Query 047959
Match_columns 478
No_of_seqs 333 out of 4550
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 08:10:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047959.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047959hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2id5_A Lingo-1, leucine rich r 99.9 3.1E-27 1.1E-31 239.0 19.3 277 127-412 49-331 (477)
2 3rgz_A Protein brassinosteroid 99.9 2.3E-27 7.8E-32 253.4 12.7 274 130-412 339-715 (768)
3 3v47_A TOLL-like receptor 5B a 99.9 6.8E-27 2.3E-31 235.1 14.8 275 128-412 48-406 (455)
4 3o6n_A APL1; leucine-rich repe 99.9 1.8E-26 6.2E-31 227.2 15.3 278 117-412 43-350 (390)
5 4eco_A Uncharacterized protein 99.9 5.4E-27 1.8E-31 245.0 11.6 269 128-410 200-545 (636)
6 2id5_A Lingo-1, leucine rich r 99.9 9E-26 3.1E-30 228.3 19.3 270 134-412 32-307 (477)
7 4fcg_A Uncharacterized protein 99.9 4.8E-26 1.6E-30 218.4 16.0 231 133-410 80-310 (328)
8 3rgz_A Protein brassinosteroid 99.9 7E-27 2.4E-31 249.6 9.4 272 132-412 267-549 (768)
9 4ecn_A Leucine-rich repeat pro 99.9 4.1E-26 1.4E-30 243.0 14.4 159 129-293 443-636 (876)
10 4eco_A Uncharacterized protein 99.9 9E-27 3.1E-31 243.3 9.3 270 131-412 270-577 (636)
11 4fmz_A Internalin; leucine ric 99.9 2.2E-25 7.7E-30 215.8 16.8 260 130-412 62-322 (347)
12 3oja_B Anopheles plasmodium-re 99.9 1.2E-25 4E-30 233.4 15.3 270 126-412 67-356 (597)
13 4fmz_A Internalin; leucine ric 99.9 2.9E-25 9.8E-30 215.1 16.7 272 117-412 64-344 (347)
14 3vq2_A TLR4, TOLL-like recepto 99.9 1.5E-25 5.1E-30 233.6 15.7 87 128-214 74-164 (606)
15 2z7x_B TOLL-like receptor 1, v 99.9 2.9E-25 9.8E-30 227.1 17.2 131 272-411 321-454 (520)
16 4ecn_A Leucine-rich repeat pro 99.9 2.2E-25 7.4E-30 237.4 16.8 283 117-412 489-817 (876)
17 3t6q_A CD180 antigen; protein- 99.9 8.2E-26 2.8E-30 235.5 13.0 270 135-412 255-534 (606)
18 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.5E-25 2.2E-29 226.5 18.8 97 119-217 52-160 (562)
19 3t6q_A CD180 antigen; protein- 99.9 4.3E-25 1.5E-29 230.1 17.6 276 127-412 271-558 (606)
20 3vq2_A TLR4, TOLL-like recepto 99.9 1.6E-25 5.5E-30 233.3 14.2 112 127-238 49-164 (606)
21 3v47_A TOLL-like receptor 5B a 99.9 4E-26 1.4E-30 229.5 7.5 273 130-412 26-382 (455)
22 1ogq_A PGIP-2, polygalacturona 99.9 2.5E-26 8.4E-31 219.0 5.3 247 134-393 50-307 (313)
23 1xku_A Decorin; proteoglycan, 99.9 1.1E-24 3.8E-29 209.4 16.8 262 135-412 32-304 (330)
24 3o6n_A APL1; leucine-rich repe 99.9 1.4E-24 4.8E-29 213.7 17.2 252 117-389 67-351 (390)
25 2z7x_B TOLL-like receptor 1, v 99.9 8.2E-25 2.8E-29 223.7 14.3 152 247-412 322-479 (520)
26 2z63_A TOLL-like receptor 4, v 99.9 5.5E-25 1.9E-29 227.5 13.2 136 269-411 367-504 (570)
27 1o6v_A Internalin A; bacterial 99.9 3.3E-24 1.1E-28 216.0 16.9 260 130-412 86-364 (466)
28 2ft3_A Biglycan; proteoglycan, 99.9 2.1E-24 7E-29 207.7 14.6 261 135-412 34-305 (332)
29 3j0a_A TOLL-like receptor 5; m 99.9 3.2E-24 1.1E-28 231.4 17.1 109 130-238 44-159 (844)
30 2z81_A CD282 antigen, TOLL-lik 99.9 1.6E-24 5.4E-29 223.1 13.9 132 128-259 44-182 (549)
31 2z81_A CD282 antigen, TOLL-lik 99.9 1.1E-24 3.8E-29 224.3 12.6 148 134-283 26-180 (549)
32 3j0a_A TOLL-like receptor 5; m 99.9 7.4E-24 2.5E-28 228.6 19.4 280 127-412 17-373 (844)
33 1xku_A Decorin; proteoglycan, 99.9 1.5E-24 5E-29 208.6 12.3 262 134-411 52-329 (330)
34 1ogq_A PGIP-2, polygalacturona 99.9 1.1E-25 3.8E-30 214.5 4.0 243 157-412 50-302 (313)
35 3oja_B Anopheles plasmodium-re 99.9 3.5E-24 1.2E-28 222.4 15.4 252 117-389 73-357 (597)
36 1o6v_A Internalin A; bacterial 99.9 8.8E-24 3E-28 212.9 17.7 273 116-412 87-386 (466)
37 2ft3_A Biglycan; proteoglycan, 99.9 2.3E-24 7.7E-29 207.4 12.0 263 133-412 53-331 (332)
38 2z63_A TOLL-like receptor 4, v 99.9 5.5E-24 1.9E-28 220.0 14.6 110 129-238 47-160 (570)
39 1ziw_A TOLL-like receptor 3; i 99.9 6.1E-24 2.1E-28 224.4 13.9 277 127-412 42-364 (680)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-23 4.2E-28 217.0 15.4 122 134-259 52-179 (562)
41 2z80_A TOLL-like receptor 2, v 99.9 1.9E-23 6.5E-28 202.7 13.4 264 139-412 36-312 (353)
42 3bz5_A Internalin-J, INLJ; leu 99.9 5.3E-23 1.8E-27 206.0 16.8 252 131-412 61-350 (457)
43 4fcg_A Uncharacterized protein 99.9 7.6E-24 2.6E-28 203.0 10.2 202 130-338 100-312 (328)
44 3bz5_A Internalin-J, INLJ; leu 99.9 1.7E-22 5.8E-27 202.3 20.1 234 130-389 81-351 (457)
45 4g8a_A TOLL-like receptor 4; l 99.9 3.5E-23 1.2E-27 216.6 13.2 111 128-238 70-184 (635)
46 2z80_A TOLL-like receptor 2, v 99.9 4.1E-23 1.4E-27 200.4 12.5 250 134-392 52-316 (353)
47 2z66_A Variable lymphocyte rec 99.9 3E-23 1E-27 197.2 9.8 192 138-339 11-211 (306)
48 1ziw_A TOLL-like receptor 3; i 99.9 1.2E-22 4E-27 214.6 14.7 271 134-412 25-340 (680)
49 2z66_A Variable lymphocyte rec 99.9 5.7E-23 1.9E-27 195.3 10.7 221 134-363 28-258 (306)
50 1ozn_A Reticulon 4 receptor; N 99.9 3E-23 1E-27 195.1 8.4 217 137-363 14-235 (285)
51 3zyj_A Leucine-rich repeat-con 99.9 3.7E-22 1.3E-26 199.5 14.7 102 135-236 65-169 (440)
52 3zyi_A Leucine-rich repeat-con 99.9 4.7E-22 1.6E-26 199.5 14.2 217 135-362 76-299 (452)
53 1jl5_A Outer protein YOPM; leu 99.9 1.9E-21 6.6E-26 194.4 17.5 245 134-412 131-407 (454)
54 3zyi_A Leucine-rich repeat-con 99.9 1.3E-21 4.4E-26 196.3 14.5 241 136-412 56-301 (452)
55 3g06_A SSPH2 (leucine-rich rep 99.9 6E-21 2E-25 196.9 19.2 234 134-412 61-295 (622)
56 1ozn_A Reticulon 4 receptor; N 99.9 4.1E-22 1.4E-26 187.3 9.5 202 133-341 31-239 (285)
57 3zyj_A Leucine-rich repeat-con 99.9 2E-21 6.9E-26 194.2 13.4 240 136-388 45-290 (440)
58 1wwl_A Monocyte differentiatio 99.8 1.2E-22 4.1E-27 193.4 -0.1 243 131-388 40-307 (312)
59 3o53_A Protein LRIM1, AGAP0063 99.8 1.8E-22 6E-27 192.8 0.8 237 129-410 29-271 (317)
60 1jl5_A Outer protein YOPM; leu 99.8 4.2E-21 1.4E-25 192.0 9.8 243 131-412 31-288 (454)
61 1wwl_A Monocyte differentiatio 99.8 1.5E-22 5.3E-27 192.7 -0.9 244 153-412 39-307 (312)
62 2z62_A TOLL-like receptor 4, v 99.8 3.8E-20 1.3E-24 173.0 13.3 201 134-341 28-238 (276)
63 4g8a_A TOLL-like receptor 4; l 99.8 4.2E-20 1.4E-24 193.3 14.1 289 116-412 73-578 (635)
64 3o53_A Protein LRIM1, AGAP0063 99.8 1.2E-22 4E-27 194.0 -5.0 236 134-412 10-248 (317)
65 3oja_A Leucine-rich immune mol 99.8 9.3E-22 3.2E-26 198.6 1.0 235 131-385 31-270 (487)
66 2o6q_A Variable lymphocyte rec 99.8 2.2E-19 7.6E-24 167.1 16.1 198 135-340 17-218 (270)
67 3g06_A SSPH2 (leucine-rich rep 99.8 1.8E-19 6.1E-24 185.9 15.9 236 119-395 61-302 (622)
68 1h6u_A Internalin H; cell adhe 99.8 2.6E-19 8.7E-24 170.0 13.8 195 131-343 38-233 (308)
69 1z7x_W Ribonuclease inhibitor; 99.8 1.4E-22 4.8E-27 203.9 -11.6 269 135-412 86-409 (461)
70 2ast_B S-phase kinase-associat 99.8 1.3E-21 4.5E-26 188.4 -4.5 250 136-397 49-313 (336)
71 3oja_A Leucine-rich immune mol 99.8 7.7E-21 2.6E-25 191.9 -0.1 231 155-406 32-267 (487)
72 2z62_A TOLL-like receptor 4, v 99.8 3.9E-19 1.3E-23 166.1 11.4 216 138-390 11-237 (276)
73 1p9a_G Platelet glycoprotein I 99.8 1.3E-18 4.4E-23 163.5 14.7 199 131-340 7-208 (290)
74 2xwt_C Thyrotropin receptor; s 99.8 5.2E-19 1.8E-23 161.6 11.2 184 146-340 23-218 (239)
75 3rfs_A Internalin B, repeat mo 99.8 9E-19 3.1E-23 163.2 13.0 208 131-377 38-246 (272)
76 1z7x_W Ribonuclease inhibitor; 99.8 1.4E-22 4.7E-27 204.0 -14.6 131 129-259 23-180 (461)
77 3rfs_A Internalin B, repeat mo 99.8 4.8E-19 1.6E-23 165.0 10.4 129 130-259 59-191 (272)
78 2o6q_A Variable lymphocyte rec 99.8 1.8E-18 6E-23 161.0 14.1 175 158-340 17-194 (270)
79 3ogk_B Coronatine-insensitive 99.8 1.1E-19 3.9E-24 188.6 5.8 277 131-412 161-499 (592)
80 1h6u_A Internalin H; cell adhe 99.7 7.4E-18 2.5E-22 159.9 13.1 196 153-370 37-233 (308)
81 3ogk_B Coronatine-insensitive 99.7 6.9E-20 2.3E-24 190.2 -1.8 278 129-412 187-524 (592)
82 4ay9_X Follicle-stimulating ho 99.7 6.4E-18 2.2E-22 163.4 11.9 240 137-410 12-255 (350)
83 1p9a_G Platelet glycoprotein I 99.7 1.1E-17 3.9E-22 157.1 12.5 176 134-317 31-209 (290)
84 4glp_A Monocyte differentiatio 99.7 2.7E-18 9.2E-23 163.2 7.8 196 157-363 91-304 (310)
85 2ast_B S-phase kinase-associat 99.7 2.6E-19 9E-24 172.2 0.1 225 134-369 70-308 (336)
86 2ca6_A RAN GTPase-activating p 99.7 1.9E-20 6.5E-25 183.8 -8.1 85 131-215 29-134 (386)
87 4ay9_X Follicle-stimulating ho 99.7 2.5E-17 8.7E-22 159.2 13.6 218 134-386 30-255 (350)
88 2xwt_C Thyrotropin receptor; s 99.7 3.6E-18 1.2E-22 155.9 7.0 215 160-412 14-237 (239)
89 2ca6_A RAN GTPase-activating p 99.7 4.6E-20 1.6E-24 181.1 -6.9 252 136-393 11-319 (386)
90 1h6t_A Internalin B; cell adhe 99.7 3.4E-17 1.2E-21 153.9 10.7 171 131-341 43-214 (291)
91 2p1m_B Transport inhibitor res 99.7 5.4E-19 1.8E-23 183.5 -2.6 165 117-283 128-346 (594)
92 3m19_A Variable lymphocyte rec 99.7 1.8E-16 6.1E-21 145.8 14.3 176 135-341 15-193 (251)
93 3m19_A Variable lymphocyte rec 99.7 1.6E-16 5.6E-21 146.0 13.9 176 157-364 14-190 (251)
94 4glp_A Monocyte differentiatio 99.7 2.4E-17 8.2E-22 156.6 8.2 102 158-259 65-179 (310)
95 3goz_A Leucine-rich repeat-con 99.7 1E-18 3.4E-23 169.9 -3.4 38 133-170 21-64 (362)
96 1m9s_A Internalin B; cell inva 99.7 9.6E-17 3.3E-21 165.3 10.0 176 131-322 40-216 (605)
97 1h6t_A Internalin B; cell adhe 99.7 2.3E-16 8E-21 148.2 11.4 170 153-364 42-211 (291)
98 3goz_A Leucine-rich repeat-con 99.7 1.2E-18 4E-23 169.4 -5.2 223 138-363 2-263 (362)
99 2p1m_B Transport inhibitor res 99.7 4.1E-19 1.4E-23 184.4 -9.9 276 131-412 127-492 (594)
100 1m9s_A Internalin B; cell inva 99.7 2.7E-16 9.2E-21 162.0 11.0 192 135-343 22-213 (605)
101 3cvr_A Invasion plasmid antige 99.6 6.9E-16 2.4E-20 157.3 13.0 179 135-343 60-246 (571)
102 4ezg_A Putative uncharacterize 99.6 1.4E-15 4.7E-20 134.3 11.3 154 155-341 42-195 (197)
103 2o6s_A Variable lymphocyte rec 99.6 1.5E-15 5.1E-20 135.3 10.6 121 137-259 10-134 (208)
104 1xeu_A Internalin C; cellular 99.6 8.8E-16 3E-20 142.0 7.3 171 132-342 17-187 (263)
105 1xeu_A Internalin C; cellular 99.6 7.7E-16 2.6E-20 142.4 6.0 123 130-259 37-160 (263)
106 4ezg_A Putative uncharacterize 99.6 1.2E-15 4.1E-20 134.7 5.4 152 131-315 41-193 (197)
107 3cvr_A Invasion plasmid antige 99.6 3.3E-15 1.1E-19 152.3 7.6 167 133-326 79-253 (571)
108 2o6s_A Variable lymphocyte rec 99.5 1.6E-14 5.6E-19 128.6 10.2 180 159-378 9-190 (208)
109 2v9t_B SLIT homolog 2 protein 99.5 3.4E-14 1.1E-18 127.6 11.8 100 137-238 14-115 (220)
110 2v70_A SLIT-2, SLIT homolog 2 99.5 2.8E-14 9.7E-19 128.1 10.2 150 137-317 14-167 (220)
111 3e6j_A Variable lymphocyte rec 99.5 5.9E-14 2E-18 126.9 11.9 149 137-317 22-173 (229)
112 2xot_A Amphoterin-induced prot 99.5 1.1E-14 3.7E-19 141.3 6.8 170 137-315 21-201 (361)
113 2xot_A Amphoterin-induced prot 99.5 1.8E-14 6.3E-19 139.6 8.2 124 136-259 41-173 (361)
114 3e6j_A Variable lymphocyte rec 99.5 8.9E-14 3.1E-18 125.7 11.3 154 158-342 20-174 (229)
115 2v9t_B SLIT homolog 2 protein 99.5 1.2E-13 4E-18 124.1 11.7 127 134-260 32-163 (220)
116 2a5y_B CED-4; apoptosis; HET: 99.5 1.5E-14 5E-19 148.0 5.8 89 3-99 367-473 (549)
117 1dce_A Protein (RAB geranylger 99.5 7.5E-17 2.6E-21 165.1 -12.0 196 154-360 346-567 (567)
118 2v70_A SLIT-2, SLIT homolog 2 99.5 9.2E-14 3.1E-18 124.8 9.1 153 159-342 13-168 (220)
119 4b8c_D Glucose-repressible alc 99.5 1.1E-14 3.9E-19 153.5 2.3 111 148-259 215-326 (727)
120 2ell_A Acidic leucine-rich nuc 99.4 9.8E-14 3.4E-18 119.0 7.4 106 132-238 22-131 (168)
121 2je0_A Acidic leucine-rich nuc 99.4 4.8E-14 1.6E-18 118.4 4.4 106 132-238 15-124 (149)
122 1w8a_A SLIT protein; signaling 99.4 6.7E-13 2.3E-17 116.4 9.9 122 137-260 11-137 (192)
123 2wfh_A SLIT homolog 2 protein 99.4 1.8E-12 6.1E-17 113.7 12.2 122 137-260 13-137 (193)
124 2ell_A Acidic leucine-rich nuc 99.4 2.2E-13 7.5E-18 116.8 5.7 133 156-292 23-163 (168)
125 1a9n_A U2A', U2A'; complex (nu 99.4 2.9E-13 9.8E-18 117.0 5.1 126 131-259 16-150 (176)
126 3sb4_A Hypothetical leucine ri 99.4 1.7E-12 5.7E-17 124.1 9.8 261 133-408 48-328 (329)
127 1dce_A Protein (RAB geranylger 99.3 1.6E-12 5.4E-17 133.0 9.3 119 158-281 442-566 (567)
128 2je0_A Acidic leucine-rich nuc 99.3 4.2E-13 1.4E-17 112.5 2.5 104 155-259 15-123 (149)
129 1w8a_A SLIT protein; signaling 99.3 5.6E-12 1.9E-16 110.5 8.3 126 159-317 10-140 (192)
130 4b8c_D Glucose-repressible alc 99.3 6.3E-12 2.1E-16 132.6 9.2 111 127-238 217-327 (727)
131 2wfh_A SLIT homolog 2 protein 99.3 2E-11 6.9E-16 106.9 10.3 126 159-316 12-139 (193)
132 2o6r_A Variable lymphocyte rec 99.3 4.4E-11 1.5E-15 103.3 12.2 123 136-260 9-135 (177)
133 1a9n_A U2A', U2A'; complex (nu 99.2 1.3E-11 4.4E-16 106.5 7.4 120 117-238 17-151 (176)
134 1ds9_A Outer arm dynein; leuci 99.2 1.2E-13 4.2E-18 121.8 -6.4 121 136-259 25-150 (198)
135 3g39_A Variable lymphocyte rec 99.2 1.3E-10 4.4E-15 99.6 10.6 101 136-238 11-113 (170)
136 2r9u_A Variable lymphocyte rec 99.2 1.8E-10 6.2E-15 99.0 11.4 100 137-238 15-116 (174)
137 2o6r_A Variable lymphocyte rec 99.2 1.6E-10 5.6E-15 99.6 10.8 106 133-238 27-135 (177)
138 1ds9_A Outer arm dynein; leuci 99.1 2.8E-12 9.6E-17 113.0 -3.2 145 158-333 24-180 (198)
139 4fdw_A Leucine rich hypothetic 99.1 2.2E-09 7.4E-14 105.0 16.5 236 158-412 136-381 (401)
140 4fdw_A Leucine rich hypothetic 99.0 3.5E-09 1.2E-13 103.5 15.9 242 127-387 129-380 (401)
141 3sfz_A APAF-1, apoptotic pepti 99.0 1.6E-10 5.4E-15 130.1 5.3 85 3-97 368-452 (1249)
142 3sb4_A Hypothetical leucine ri 99.0 6.1E-10 2.1E-14 106.3 8.0 233 136-383 74-327 (329)
143 3g39_A Variable lymphocyte rec 99.0 2.1E-09 7.2E-14 91.9 9.4 101 158-260 10-113 (170)
144 2r9u_A Variable lymphocyte rec 98.9 2.4E-09 8.3E-14 91.9 9.4 101 158-260 13-116 (174)
145 1vt4_I APAF-1 related killer D 98.9 2.5E-10 8.7E-15 120.3 3.0 78 3-91 359-437 (1221)
146 2ifg_A High affinity nerve gro 98.8 1.9E-08 6.3E-13 96.6 10.3 99 138-238 12-114 (347)
147 3un9_A NLR family member X1; l 98.8 8.6E-11 3E-15 113.8 -6.4 59 134-192 72-138 (372)
148 3un9_A NLR family member X1; l 98.7 2.6E-10 9.1E-15 110.4 -6.1 162 157-323 72-259 (372)
149 4fs7_A Uncharacterized protein 98.7 4.5E-07 1.5E-11 88.5 16.7 99 302-410 275-375 (394)
150 1z6t_A APAF-1, apoptotic prote 98.7 1.2E-08 4.2E-13 105.3 5.3 82 3-94 368-449 (591)
151 4fs7_A Uncharacterized protein 98.7 3.2E-07 1.1E-11 89.6 14.8 284 127-439 64-374 (394)
152 2ra8_A Uncharacterized protein 98.6 5.2E-09 1.8E-13 100.5 -0.1 12 155-166 137-148 (362)
153 2ifg_A High affinity nerve gro 98.6 9.1E-08 3.1E-12 91.8 7.4 99 160-260 11-114 (347)
154 2ra8_A Uncharacterized protein 98.5 1.2E-08 4.2E-13 97.9 -0.5 138 267-412 164-318 (362)
155 3e4g_A ATP synthase subunit S, 98.4 1.3E-07 4.3E-12 80.0 4.2 36 303-338 61-96 (176)
156 4gt6_A Cell surface protein; l 98.4 7.3E-06 2.5E-10 79.9 16.3 269 127-412 80-368 (394)
157 3e4g_A ATP synthase subunit S, 98.3 3E-07 1E-11 77.8 2.4 85 327-413 61-151 (176)
158 4gt6_A Cell surface protein; l 98.1 1.7E-05 6E-10 77.2 12.7 274 116-410 84-387 (394)
159 1io0_A Tropomodulin; LRR prote 98.1 3.5E-07 1.2E-11 79.1 0.4 113 130-260 32-162 (185)
160 4h09_A Hypothetical leucine ri 98.1 7.3E-05 2.5E-09 72.3 15.6 262 127-408 62-340 (379)
161 1io0_A Tropomodulin; LRR prote 97.9 1.6E-06 5.6E-11 74.8 0.4 121 150-289 29-164 (185)
162 3rw6_A Nuclear RNA export fact 97.8 1.2E-05 4.2E-10 73.1 3.9 60 132-192 168-232 (267)
163 3rw6_A Nuclear RNA export fact 97.7 3.6E-05 1.2E-09 70.0 4.9 78 155-233 168-257 (267)
164 4h09_A Hypothetical leucine ri 97.6 0.0012 4.2E-08 63.6 14.6 264 129-410 41-319 (379)
165 3rfe_A Platelet glycoprotein I 95.4 0.028 9.5E-07 44.8 6.2 51 138-190 12-65 (130)
166 1pgv_A TMD-1, tropomodulin TMD 95.4 0.0043 1.5E-07 53.2 1.2 62 131-192 38-110 (197)
167 1pgv_A TMD-1, tropomodulin TMD 95.2 0.013 4.3E-07 50.3 3.6 107 153-259 37-167 (197)
168 3rfe_A Platelet glycoprotein I 95.1 0.031 1.1E-06 44.5 5.5 53 160-214 11-66 (130)
169 1w5s_A Origin recognition comp 25.3 2.1E+02 0.0072 26.5 8.3 79 4-83 300-387 (412)
170 3lqv_P Splicing factor 3B subu 22.6 26 0.0009 20.6 0.7 9 22-30 30-38 (39)
No 1
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=3.1e-27 Score=239.02 Aligned_cols=277 Identities=19% Similarity=0.170 Sum_probs=226.8
Q ss_pred ccccCCCCeEeEEEecCCCCCcC-CccCCCCCCCceEeecCCCCCccchh-hhCCCCCcEEeCCCCcCccc-chhhhccc
Q 047959 127 ENFCKKFKHLRVLNLGSAVLDQY-PPGLENLFYLKYLKLNIPSLKCLPSL-LCTLLNLQTLEMPSSYIDHS-PEDIWMMQ 203 (478)
Q Consensus 127 ~~~~~~~~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~l-p~~i~~l~ 203 (478)
...+.++++|++|+|++|.++.+ |..+.++++|++|++++|.+..+|.. +.++++|++|++++|.+..+ |..+..++
T Consensus 49 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 128 (477)
T 2id5_A 49 QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128 (477)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccc
Confidence 45678899999999999998855 67799999999999999999988864 68899999999999988776 45688899
Q ss_pred cCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCC-ccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEE
Q 047959 204 KLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCT-PDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLK 281 (478)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~ 281 (478)
+|++|++++|.+....+..+..+++|++|++.++. ... +..+.++++|+.|+++++ ......+..+..+++|+.|+
T Consensus 129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n--~i~~~~~~~~~~l~~L~~L~ 206 (477)
T 2id5_A 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL--NINAIRDYSFKRLYRLKVLE 206 (477)
T ss_dssp TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC--CCCEECTTCSCSCTTCCEEE
T ss_pred cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC--cCcEeChhhcccCcccceee
Confidence 99999998887777777788999999999999988 443 345889999999999998 34444455788899999999
Q ss_pred EEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEe
Q 047959 282 LVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLK 361 (478)
Q Consensus 282 l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~ 361 (478)
++++..+..+|. .... ..+|+.|++++|.++......+..+++|+.|+|++|.+....... +..+++|+.|+++
T Consensus 207 l~~~~~~~~~~~---~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~ 280 (477)
T 2id5_A 207 ISHWPYLDTMTP---NCLY-GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM--LHELLRLQEIQLV 280 (477)
T ss_dssp EECCTTCCEECT---TTTT-TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTS--CTTCTTCCEEECC
T ss_pred CCCCccccccCc---cccc-CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhh--ccccccCCEEECC
Confidence 998777778887 6666 679999999999987665567899999999999999876443322 6788999999999
Q ss_pred cCCCCCce-eeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959 362 SMLWLEEW-TMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 362 ~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 412 (478)
++ .++.+ +..+..+++|+.|++++|......+..+..+++|+.|++++++
T Consensus 281 ~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 281 GG-QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp SS-CCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred CC-ccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 95 56655 4556789999999999986444334467889999999999865
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=2.3e-27 Score=253.39 Aligned_cols=274 Identities=20% Similarity=0.194 Sum_probs=157.0
Q ss_pred cCCCCeEeEEEecCCCCC-cCCccCCCC---------------------------CCCceEeecCCCCC-ccchhhhCCC
Q 047959 130 CKKFKHLRVLNLGSAVLD-QYPPGLENL---------------------------FYLKYLKLNIPSLK-CLPSLLCTLL 180 (478)
Q Consensus 130 ~~~~~~L~~L~L~~~~l~-~lp~~~~~l---------------------------~~L~~L~l~~~~i~-~lp~~~~~l~ 180 (478)
+..+++|++|++++|.++ .+|..+..+ ++|++|++++|.+. .+|..+++++
T Consensus 339 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~ 418 (768)
T 3rgz_A 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418 (768)
T ss_dssp HTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT
T ss_pred HhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC
Confidence 466677777777777665 555554444 34445555554444 4555555566
Q ss_pred CCcEEeCCCCcCc-ccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEE
Q 047959 181 NLQTLEMPSSYID-HSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRIS 257 (478)
Q Consensus 181 ~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~ 257 (478)
+|++|++++|.+. .+|..++.+++|++|++++|.+...+|..+..+++|++|++.+|. +..+..++++++|+.|+++
T Consensus 419 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 498 (768)
T 3rgz_A 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498 (768)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEcc
Confidence 6666666666443 445555566666666665555555555555566666666666555 3455555666666666666
Q ss_pred ecCCcchhhHHHhccCCCCCCEEEEEecCccc-ccCccccccccCCCCceEEEEEeecCCCCCcC---------------
Q 047959 258 GDLSYYHSGVSKSLCQLHKLECLKLVNEGKMR-QLSRMILSEYKFPPSLTQLSLSNTELVEDPMP--------------- 321 (478)
Q Consensus 258 ~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~-~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------- 321 (478)
+| ...+.+|..++.+++|+.|++++ +.+. .+|. .+.. +++|+.|++++|.+++..+.
T Consensus 499 ~N--~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~---~l~~-l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~ 571 (768)
T 3rgz_A 499 NN--RLTGEIPKWIGRLENLAILKLSN-NSFSGNIPA---ELGD-CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA 571 (768)
T ss_dssp SS--CCCSCCCGGGGGCTTCCEEECCS-SCCEEECCG---GGGG-CTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTC
T ss_pred CC--ccCCcCChHHhcCCCCCEEECCC-CcccCcCCH---HHcC-CCCCCEEECCCCccCCcCChHHhcccchhhhhccc
Confidence 65 34445555555666666666665 3333 5555 5555 66666666666654432222
Q ss_pred -------------------------------------------------------cccCCCCCCeEEEeeCcccCceeEE
Q 047959 322 -------------------------------------------------------TLEELPHLEVLKLKQNSYLERKLAC 346 (478)
Q Consensus 322 -------------------------------------------------------~l~~l~~L~~L~L~~~~~~~~~~~~ 346 (478)
.++.+++|+.|+|++|.+++..+..
T Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~ 651 (768)
T 3rgz_A 572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651 (768)
T ss_dssp SCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG
T ss_pred cccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHH
Confidence 1223445666666666665554433
Q ss_pred eCCCCCcccceeEEecCCCCCceeeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959 347 VGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 347 ~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 412 (478)
++.+++|+.|+|+++.--..+|..++.+++|+.|++++|.....+|..+.++++|+.|++++|+
T Consensus 652 --l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 652 --IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp --GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred --HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 4566666666666643323566666666666666666666555666666666666666666553
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=6.8e-27 Score=235.06 Aligned_cols=275 Identities=17% Similarity=0.150 Sum_probs=191.8
Q ss_pred cccCCCCeEeEEEecCCCCC-cC-CccCCCCCCCceEeecCCCCCcc-chhhhCCCCCcEEeCCCCcCcc-cchh--hhc
Q 047959 128 NFCKKFKHLRVLNLGSAVLD-QY-PPGLENLFYLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSYIDH-SPED--IWM 201 (478)
Q Consensus 128 ~~~~~~~~L~~L~L~~~~l~-~l-p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~-lp~~--i~~ 201 (478)
..+.++++|++|++++|.+. .+ +..+.++++|++|++++|.+..+ |..++++++|++|++++|.+.. +|.. +..
T Consensus 48 ~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 127 (455)
T 3v47_A 48 TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP 127 (455)
T ss_dssp TTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTT
T ss_pred hHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccC
Confidence 34566777777777777764 44 34467777777777777777644 5667777777777777776654 3333 666
Q ss_pred cccCcEEEeeCCCCCCCCCCC-CCCCCCCcEeCcccCC--CCCccc----------------------------------
Q 047959 202 MQKLMHLNFGSITLPAPPKNN-SSPLKNLIFISALHPS--SCTPDI---------------------------------- 244 (478)
Q Consensus 202 l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~--~~~~~~---------------------------------- 244 (478)
+++|++|++++|.+....|.. +..+++|++|++.++. ...+..
T Consensus 128 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 207 (455)
T 3v47_A 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207 (455)
T ss_dssp CTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCC
T ss_pred cccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccc
Confidence 777777777666665555544 6677777777777665 222222
Q ss_pred cCCCCCCcEEEEEecCCcchhhHHHhcc---------------------------------------CCCCCCEEEEEec
Q 047959 245 LGRLPNVQTLRISGDLSYYHSGVSKSLC---------------------------------------QLHKLECLKLVNE 285 (478)
Q Consensus 245 l~~l~~L~~L~l~~~~~~~~~~l~~~l~---------------------------------------~~~~L~~L~l~~~ 285 (478)
+..+++|+.|++++| ...+..+..+. ..++|+.|++++
T Consensus 208 ~~~~~~L~~L~Ls~n--~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~- 284 (455)
T 3v47_A 208 PFKNTSITTLDLSGN--GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK- 284 (455)
T ss_dssp TTTTCEEEEEECTTS--CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCS-
T ss_pred ccccceeeeEecCCC--cccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecC-
Confidence 224467888888887 34333333221 125788888887
Q ss_pred Ccccc-cCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCC
Q 047959 286 GKMRQ-LSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSML 364 (478)
Q Consensus 286 ~~l~~-~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 364 (478)
+.+.. .|. .+.. +++|+.|++++|.+.+..+..++.+++|++|+|++|.+.+..+.. +..+++|++|+++++
T Consensus 285 n~l~~~~~~---~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~Ls~N- 357 (455)
T 3v47_A 285 SKIFALLKS---VFSH-FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRM--FENLDKLEVLDLSYN- 357 (455)
T ss_dssp SCCCEECTT---TTTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG--GTTCTTCCEEECCSS-
T ss_pred ccccccchh---hccc-CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhH--hcCcccCCEEECCCC-
Confidence 55554 455 6777 899999999999988777778899999999999988875543332 678899999999985
Q ss_pred CCCce-eeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959 365 WLEEW-TMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 365 ~l~~l-~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 412 (478)
.++.+ +..+..+++|+.|++++|......+..+..+++|+.|++++|+
T Consensus 358 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 358 HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 56655 5567889999999999986544333456889999999998765
No 4
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=1.8e-26 Score=227.21 Aligned_cols=278 Identities=17% Similarity=0.206 Sum_probs=174.8
Q ss_pred CCCCeeeec---------CccccCCCCeEeEEEecCCCCCcCCc-cCCCCCCCceEeecCCCCCccc-hhhhCCCCCcEE
Q 047959 117 KSDHLALIH---------CENFCKKFKHLRVLNLGSAVLDQYPP-GLENLFYLKYLKLNIPSLKCLP-SLLCTLLNLQTL 185 (478)
Q Consensus 117 ~~~~lr~l~---------~~~~~~~~~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L 185 (478)
..+++|.++ +..++..+++|++|++++|.++.++. .++.+++|++|++++|.+..+| ..++++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 446666662 45566889999999999999986654 6899999999999999999765 457899999999
Q ss_pred eCCCCcCcccchhh-hccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcc
Q 047959 186 EMPSSYIDHSPEDI-WMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYY 263 (478)
Q Consensus 186 ~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~ 263 (478)
++++|.+..+|..+ .++++|++|++++|.+....+..+..+++|++|++.++. ... .++.+++|+.|+++++. .
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n~--l 198 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNL--L 198 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSSC--C
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeeccccc--c
Confidence 99999999998774 789999999998888776667778999999999999887 332 25556777777777663 1
Q ss_pred hhhHHHhccCCCCCCEEEEEecCcccccCcc-----------------ccccccCCCCceEEEEEeecCCCCCcCcccCC
Q 047959 264 HSGVSKSLCQLHKLECLKLVNEGKMRQLSRM-----------------ILSEYKFPPSLTQLSLSNTELVEDPMPTLEEL 326 (478)
Q Consensus 264 ~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~-----------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 326 (478)
. .+...++|+.|++++ +.+..+|.. ..++.. +++|+.|++++|.+.+..+..+..+
T Consensus 199 ~-----~~~~~~~L~~L~l~~-n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (390)
T 3o6n_A 199 S-----TLAIPIAVEELDASH-NSINVVRGPVNVELTILKLQHNNLTDTAWLLN-YPGLVEVDLSYNELEKIMYHPFVKM 271 (390)
T ss_dssp S-----EEECCSSCSEEECCS-SCCCEEECCCCSSCCEEECCSSCCCCCGGGGG-CTTCSEEECCSSCCCEEESGGGTTC
T ss_pred c-----ccCCCCcceEEECCC-CeeeeccccccccccEEECCCCCCcccHHHcC-CCCccEEECCCCcCCCcChhHcccc
Confidence 1 122334455555544 444433320 003444 4555555555555444434444555
Q ss_pred CCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceeeCCCcccccceeEEecCCCCCCCccccCCCCCCCEE
Q 047959 327 PHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKL 406 (478)
Q Consensus 327 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L 406 (478)
++|+.|++++|.+.+.. .. ...+++|++|+++++ .++.+|.....+++|+.|++++|.. +.+| +..+++|+.|
T Consensus 272 ~~L~~L~L~~n~l~~~~--~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~i-~~~~--~~~~~~L~~L 344 (390)
T 3o6n_A 272 QRLERLYISNNRLVALN--LY-GQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSI-VTLK--LSTHHTLKNL 344 (390)
T ss_dssp SSCCEEECCSSCCCEEE--CS-SSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCC-CCCC--CCTTCCCSEE
T ss_pred ccCCEEECCCCcCcccC--cc-cCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCcc-ceeC--chhhccCCEE
Confidence 55555555554443321 11 334455555555553 3444444444455555555555442 2222 3445555555
Q ss_pred EEecCc
Q 047959 407 ELHWPQ 412 (478)
Q Consensus 407 ~l~~c~ 412 (478)
++++++
T Consensus 345 ~l~~N~ 350 (390)
T 3o6n_A 345 TLSHND 350 (390)
T ss_dssp ECCSSC
T ss_pred EcCCCC
Confidence 555544
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=5.4e-27 Score=245.03 Aligned_cols=269 Identities=15% Similarity=0.188 Sum_probs=194.1
Q ss_pred cccCCCCeEeEEEecCCCCCc------------------CCccCC--CCCCCceEeecCCCCC-ccchhhhCCCCCcEEe
Q 047959 128 NFCKKFKHLRVLNLGSAVLDQ------------------YPPGLE--NLFYLKYLKLNIPSLK-CLPSLLCTLLNLQTLE 186 (478)
Q Consensus 128 ~~~~~~~~L~~L~L~~~~l~~------------------lp~~~~--~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~ 186 (478)
..++++++|++|+|++|.++. +|..++ ++++|++|++++|.+. .+|..++++++|++|+
T Consensus 200 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279 (636)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence 346788999999999999886 999988 9999999999999876 8898999999999999
Q ss_pred CCCCc-Cc--ccchhhhcc------ccCcEEEeeCCCCCCCCCC--CCCCCCCCcEeCcccCC-C-CCccccCCCCCCcE
Q 047959 187 MPSSY-ID--HSPEDIWMM------QKLMHLNFGSITLPAPPKN--NSSPLKNLIFISALHPS-S-CTPDILGRLPNVQT 253 (478)
Q Consensus 187 l~~~~-l~--~lp~~i~~l------~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~-~-~~~~~l~~l~~L~~ 253 (478)
+++|. +. .+|..++.+ ++|++|++++|.+. .+|. .++.+++|++|++.++. . .++ .++.+++|+.
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~ 357 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS 357 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESE
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCE
Confidence 99996 76 488888887 89999999888777 8888 78999999999999888 3 666 7888888889
Q ss_pred EEEEecCCcchhhHHHhccCCCC-CCEEEEEecCcccccCccccccccCCC--CceEEEEEeecCCCCCcCccc------
Q 047959 254 LRISGDLSYYHSGVSKSLCQLHK-LECLKLVNEGKMRQLSRMILSEYKFPP--SLTQLSLSNTELVEDPMPTLE------ 324 (478)
Q Consensus 254 L~l~~~~~~~~~~l~~~l~~~~~-L~~L~l~~~~~l~~~p~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~l~------ 324 (478)
|++++| ... .++..+..+++ |+.|++++ +.++.+|. .+.. .+ +|+.|++++|.+.+..+..+.
T Consensus 358 L~L~~N--~l~-~lp~~l~~l~~~L~~L~Ls~-N~l~~lp~---~~~~-~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 358 LNLAYN--QIT-EIPANFCGFTEQVENLSFAH-NKLKYIPN---IFDA-KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429 (636)
T ss_dssp EECCSS--EEE-ECCTTSEEECTTCCEEECCS-SCCSSCCS---CCCT-TCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred EECCCC--ccc-cccHhhhhhcccCcEEEccC-CcCcccch---hhhh-cccCccCEEECcCCcCCCcchhhhccccccc
Confidence 988887 233 66777888888 88888887 66777776 5554 33 667777777666554444444
Q ss_pred -CCCCCCeEEEeeCcccCceeEEeCCCCCc-------------------------------ccceeEEecCCCCCceeeC
Q 047959 325 -ELPHLEVLKLKQNSYLERKLACVGCSSFP-------------------------------QLKILHLKSMLWLEEWTMG 372 (478)
Q Consensus 325 -~l~~L~~L~L~~~~~~~~~~~~~~~~~~~-------------------------------~L~~L~L~~~~~l~~l~~~ 372 (478)
.+++|+.|++++|.+....... +..++ +|+.|+++++ .++.+|..
T Consensus 430 ~~~~~L~~L~Ls~N~l~~lp~~~--~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~ 506 (636)
T 4eco_A 430 FKGINVSSINLSNNQISKFPKEL--FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDD 506 (636)
T ss_dssp CCCCCEEEEECCSSCCCSCCTHH--HHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGG
T ss_pred ccCCCCCEEECcCCccCcCCHHH--HccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC-cCCccChh
Confidence 4445555555544443211000 11122 6666666663 45556655
Q ss_pred CC--cccccceeEEecCCCCCCCccccCCCCCCCEEEEec
Q 047959 373 AG--AMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHW 410 (478)
Q Consensus 373 ~~--~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 410 (478)
.. .+++|+.|++++|.... +|..+.++++|+.|++++
T Consensus 507 ~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 507 FRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRN 545 (636)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCS
T ss_pred hhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCC
Confidence 54 66777777777665433 666666677777777754
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=9e-26 Score=228.27 Aligned_cols=270 Identities=17% Similarity=0.139 Sum_probs=227.9
Q ss_pred CeEeEEEecCCCCCcC-CccCCCCCCCceEeecCCCCCcc-chhhhCCCCCcEEeCCCCcCcccchh-hhccccCcEEEe
Q 047959 134 KHLRVLNLGSAVLDQY-PPGLENLFYLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSYIDHSPED-IWMMQKLMHLNF 210 (478)
Q Consensus 134 ~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 210 (478)
+.+++|+|++|.++.+ +..+.++++|++|++++|.+..+ |..+.++++|++|++++|.+..+|.. +.++++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 5789999999999966 45699999999999999999966 77899999999999999999999865 689999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcc
Q 047959 211 GSITLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKM 288 (478)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l 288 (478)
++|.+....+..+..+++|++|++.++. ...+..+.++++|+.|++++| ......+..+..+++|+.|++++ +.+
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~l~~l~~L~~L~l~~-n~i 188 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC--NLTSIPTEALSHLHGLIVLRLRH-LNI 188 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC--CCSSCCHHHHTTCTTCCEEEEES-CCC
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC--cCcccChhHhcccCCCcEEeCCC-CcC
Confidence 9888877778889999999999999987 444567899999999999998 44444556788999999999998 777
Q ss_pred cccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCc
Q 047959 289 RQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEE 368 (478)
Q Consensus 289 ~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 368 (478)
..++.. .+.. +++|+.|++++|...+..+.......+|++|++++|.+....... +..+++|+.|+++++ .++.
T Consensus 189 ~~~~~~--~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~Ls~n-~l~~ 262 (477)
T 2id5_A 189 NAIRDY--SFKR-LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA--VRHLVYLRFLNLSYN-PIST 262 (477)
T ss_dssp CEECTT--CSCS-CTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHH--HTTCTTCCEEECCSS-CCCE
T ss_pred cEeChh--hccc-CcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHH--hcCccccCeeECCCC-cCCc
Confidence 766542 5677 999999999999876666666666779999999999887543222 678999999999995 5666
Q ss_pred eee-CCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959 369 WTM-GAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 369 l~~-~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 412 (478)
++. .+..+++|+.|++++|......|..+..+++|+.|++++|.
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 654 35789999999999997666667888999999999999985
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=4.8e-26 Score=218.36 Aligned_cols=231 Identities=23% Similarity=0.239 Sum_probs=184.7
Q ss_pred CCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeC
Q 047959 133 FKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGS 212 (478)
Q Consensus 133 ~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~ 212 (478)
...++.|++++|.++.+|..++++++|++|++++|.+..+|..++++++|++|++++|.+..+|..++++++|++|++++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccC
Q 047959 213 ITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLS 292 (478)
Q Consensus 213 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p 292 (478)
|.....+|..+.. .. .... +..+++|+.|++++ +.++.+|
T Consensus 160 n~~~~~~p~~~~~------~~-------~~~~--------------------------~~~l~~L~~L~L~~-n~l~~lp 199 (328)
T 4fcg_A 160 CPELTELPEPLAS------TD-------ASGE--------------------------HQGLVNLQSLRLEW-TGIRSLP 199 (328)
T ss_dssp ETTCCCCCSCSEE------EC--------CCC--------------------------EEESTTCCEEEEEE-ECCCCCC
T ss_pred CCCccccChhHhh------cc-------chhh--------------------------hccCCCCCEEECcC-CCcCcch
Confidence 7777667654432 11 0111 23455566666665 5556677
Q ss_pred ccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceeeC
Q 047959 293 RMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMG 372 (478)
Q Consensus 293 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~ 372 (478)
. .++. +++|+.|++++|.+++ .++.++.+++|++|++++|.+.+..+.. +..+++|++|++++|+....+|..
T Consensus 200 ~---~l~~-l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~--~~~l~~L~~L~L~~n~~~~~~p~~ 272 (328)
T 4fcg_A 200 A---SIAN-LQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPI--FGGRAPLKRLILKDCSNLLTLPLD 272 (328)
T ss_dssp G---GGGG-CTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCC--TTCCCCCCEEECTTCTTCCBCCTT
T ss_pred H---hhcC-CCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHH--hcCCCCCCEEECCCCCchhhcchh
Confidence 6 6777 7778888888777654 4446777788888888877776655443 677888888888888777888888
Q ss_pred CCcccccceeEEecCCCCCCCccccCCCCCCCEEEEec
Q 047959 373 AGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHW 410 (478)
Q Consensus 373 ~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 410 (478)
.+.+++|+.|++++|+.++.+|..+.++++|+.+++..
T Consensus 273 ~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred hhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 88899999999999999999999999999999998865
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=7e-27 Score=249.64 Aligned_cols=272 Identities=19% Similarity=0.170 Sum_probs=215.3
Q ss_pred CCCeEeEEEecCCCCC-cCCccCCCC-CCCceEeecCCCCC-ccchhhhCCCCCcEEeCCCCcCc-ccchh-hhccccCc
Q 047959 132 KFKHLRVLNLGSAVLD-QYPPGLENL-FYLKYLKLNIPSLK-CLPSLLCTLLNLQTLEMPSSYID-HSPED-IWMMQKLM 206 (478)
Q Consensus 132 ~~~~L~~L~L~~~~l~-~lp~~~~~l-~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~l~-~lp~~-i~~l~~L~ 206 (478)
.+++|++|++++|.++ .+|..+... ++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|.. +.++++|+
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~ 346 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence 4455555555555555 666666554 77777777777777 67777778888888888888664 67755 77788888
Q ss_pred EEEeeCCCCCCCCCCCCCCCC-CCcEeCcccCC--CCCccccCC--CCCCcEEEEEecCCcchhhHHHhccCCCCCCEEE
Q 047959 207 HLNFGSITLPAPPKNNSSPLK-NLIFISALHPS--SCTPDILGR--LPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLK 281 (478)
Q Consensus 207 ~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~--~~~~~~l~~--l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~ 281 (478)
+|++++|.+...+|..+..++ +|++|++.++. +..+..+.. +++|+.|++++| ...+.++..+..+++|+.|+
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~ 424 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN--GFTGKIPPTLSNCSELVSLH 424 (768)
T ss_dssp EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSS--EEEEECCGGGGGCTTCCEEE
T ss_pred EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCC--ccccccCHHHhcCCCCCEEE
Confidence 888877766667777777766 78888887776 445555555 778899998888 56667788888999999999
Q ss_pred EEecCccc-ccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEE
Q 047959 282 LVNEGKMR-QLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHL 360 (478)
Q Consensus 282 l~~~~~l~-~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L 360 (478)
+++ +.+. .+|. .++. +++|+.|++++|.+.+..+..++.+++|++|++++|.+.+..+.. +..+++|++|++
T Consensus 425 Ls~-N~l~~~~p~---~l~~-l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~--l~~l~~L~~L~L 497 (768)
T 3rgz_A 425 LSF-NYLSGTIPS---SLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG--LSNCTNLNWISL 497 (768)
T ss_dssp CCS-SEEESCCCG---GGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG--GGGCTTCCEEEC
T ss_pred CcC-CcccCcccH---HHhc-CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH--HhcCCCCCEEEc
Confidence 998 5555 6777 8888 899999999999998888888999999999999999888766544 678899999999
Q ss_pred ecCCCCCceeeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959 361 KSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 361 ~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 412 (478)
++|.-...+|..++.+++|+.|++++|.....+|..+..+++|+.|++++|+
T Consensus 498 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred cCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 9975444788888899999999999998877899999999999999999875
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=4.1e-26 Score=243.01 Aligned_cols=159 Identities=16% Similarity=0.242 Sum_probs=107.4
Q ss_pred ccCCCCeEeEEEecCCCCCc------------------CCccCC--CCCCCceEeecCCCCC-ccchhhhCCCCCcEEeC
Q 047959 129 FCKKFKHLRVLNLGSAVLDQ------------------YPPGLE--NLFYLKYLKLNIPSLK-CLPSLLCTLLNLQTLEM 187 (478)
Q Consensus 129 ~~~~~~~L~~L~L~~~~l~~------------------lp~~~~--~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l 187 (478)
.+.++++|++|+|++|.++. +|..++ ++++|++|++++|.+. .+|..++++++|++|++
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence 34667777777777777765 777766 7777777777777654 67777777777777777
Q ss_pred CCCc-Ccc--cchhhhccc-------cCcEEEeeCCCCCCCCCC--CCCCCCCCcEeCcccCC-CCCccccCCCCCCcEE
Q 047959 188 PSSY-IDH--SPEDIWMMQ-------KLMHLNFGSITLPAPPKN--NSSPLKNLIFISALHPS-SCTPDILGRLPNVQTL 254 (478)
Q Consensus 188 ~~~~-l~~--lp~~i~~l~-------~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L 254 (478)
++|. +.. +|..+++++ +|++|++++|.+. .+|. .++++++|+.|++.++. ..++ .++.+++|+.|
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L 600 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDL 600 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEE
Confidence 7775 653 676666665 7777777666665 6666 67777777777777766 5444 66677777777
Q ss_pred EEEecCCcchhhHHHhccCCCC-CCEEEEEecCcccccCc
Q 047959 255 RISGDLSYYHSGVSKSLCQLHK-LECLKLVNEGKMRQLSR 293 (478)
Q Consensus 255 ~l~~~~~~~~~~l~~~l~~~~~-L~~L~l~~~~~l~~~p~ 293 (478)
++++|. .. .++..+..+++ |+.|++++ +.++.+|.
T Consensus 601 ~Ls~N~--l~-~lp~~l~~l~~~L~~L~Ls~-N~L~~lp~ 636 (876)
T 4ecn_A 601 KLDYNQ--IE-EIPEDFCAFTDQVEGLGFSH-NKLKYIPN 636 (876)
T ss_dssp ECCSSC--CS-CCCTTSCEECTTCCEEECCS-SCCCSCCS
T ss_pred ECcCCc--cc-cchHHHhhccccCCEEECcC-CCCCcCch
Confidence 777662 22 55555666666 67776665 55555554
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=9e-27 Score=243.31 Aligned_cols=270 Identities=17% Similarity=0.192 Sum_probs=161.6
Q ss_pred CCCCeEeEEEecCCC-CC--cCCccCCCC------CCCceEeecCCCCCccch--hhhCCCCCcEEeCCCCcCc-ccchh
Q 047959 131 KKFKHLRVLNLGSAV-LD--QYPPGLENL------FYLKYLKLNIPSLKCLPS--LLCTLLNLQTLEMPSSYID-HSPED 198 (478)
Q Consensus 131 ~~~~~L~~L~L~~~~-l~--~lp~~~~~l------~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~l~-~lp~~ 198 (478)
.++++|++|++++|. ++ .+|..++.+ ++|++|++++|.++.+|. .++++++|++|++++|.+. .+| .
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~ 348 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A 348 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence 444455555555554 44 244444433 455555555555555554 4555555555555555444 444 4
Q ss_pred hhccccCcEEEeeCCCCCCCCCCCCCCCCC-CcEeCcccCC-CCCccccCCCC--CCcEEEEEecCCcchhhHHHhcc--
Q 047959 199 IWMMQKLMHLNFGSITLPAPPKNNSSPLKN-LIFISALHPS-SCTPDILGRLP--NVQTLRISGDLSYYHSGVSKSLC-- 272 (478)
Q Consensus 199 i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~-~~~~~~l~~l~--~L~~L~l~~~~~~~~~~l~~~l~-- 272 (478)
++.+++|++|++++|.+. .+|..+..+++ |++|++.++. ..++..+..++ +|+.|++++| ...+..+..+.
T Consensus 349 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N--~l~~~~p~~l~~~ 425 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYN--EIGSVDGKNFDPL 425 (636)
T ss_dssp CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSS--CTTTTTTCSSCTT
T ss_pred hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCC--cCCCcchhhhccc
Confidence 445555555555444333 45555555555 6666666655 44444444433 5666666666 34444444455
Q ss_pred -----CCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCC-------CCCCeEEEeeCccc
Q 047959 273 -----QLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEEL-------PHLEVLKLKQNSYL 340 (478)
Q Consensus 273 -----~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l-------~~L~~L~L~~~~~~ 340 (478)
.+++|+.|++++ +.++.+|. .+...+++|+.|++++|.++......+... ++|+.|+|++|.+.
T Consensus 426 ~~~~~~~~~L~~L~Ls~-N~l~~lp~---~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 426 DPTPFKGINVSSINLSN-NQISKFPK---ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT 501 (636)
T ss_dssp CSSCCCCCCEEEEECCS-SCCCSCCT---HHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC
T ss_pred ccccccCCCCCEEECcC-CccCcCCH---HHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC
Confidence 556777777776 66666765 433226778888888877763332233222 37888888887776
Q ss_pred CceeEEeCCC--CCcccceeEEecCCCCCceeeCCCcccccceeEEec------CCCCCCCccccCCCCCCCEEEEecCc
Q 047959 341 ERKLACVGCS--SFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNP------CAYLRKLPEEQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 341 ~~~~~~~~~~--~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~------c~~l~~lp~~l~~l~~L~~L~l~~c~ 412 (478)
. .+.. +. .+++|+.|+++++ .++.+|.....+++|+.|++++ |...+.+|..+..+++|+.|++++|.
T Consensus 502 ~-lp~~--~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 502 K-LSDD--FRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp B-CCGG--GSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred c-cChh--hhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc
Confidence 2 2222 33 7888888888884 6667887788888888888854 55566788888888888888888886
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=2.2e-25 Score=215.81 Aligned_cols=260 Identities=19% Similarity=0.243 Sum_probs=194.1
Q ss_pred cCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEE
Q 047959 130 CKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLN 209 (478)
Q Consensus 130 ~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 209 (478)
+..+++|++|++++|.++.++. +..+++|++|++++|.+..+| .+..+++|++|++++|.+..++. +..+++|++|+
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~ 138 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLN 138 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEE
T ss_pred hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEE
Confidence 4668888888888888887776 888888888888888888775 57888888888888888888876 78888888888
Q ss_pred eeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcc
Q 047959 210 FGSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKM 288 (478)
Q Consensus 210 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l 288 (478)
+++|......+ .+..+++|++|++.++. ...+ .+..+++|+.|++++|. .. .++. +..+++|+.|++++ +.+
T Consensus 139 l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~--l~-~~~~-~~~l~~L~~L~l~~-n~l 211 (347)
T 4fmz_A 139 LGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVT-PIANLTDLYSLSLNYNQ--IE-DISP-LASLTSLHYFTAYV-NQI 211 (347)
T ss_dssp CTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECTTSC--CC-CCGG-GGGCTTCCEEECCS-SCC
T ss_pred CCCCCCccccc-chhhCCCCcEEEecCCCcCCch-hhccCCCCCEEEccCCc--cc-cccc-ccCCCccceeeccc-CCC
Confidence 86665444443 47888888888888887 3332 37788888888888873 22 2222 66778888888887 666
Q ss_pred cccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCc
Q 047959 289 RQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEE 368 (478)
Q Consensus 289 ~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 368 (478)
..++ .+.. +++|+.|++++|.++.... +..+++|++|++++|.+.... . +..+++|++|++++| .++.
T Consensus 212 ~~~~----~~~~-~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~---~-~~~l~~L~~L~l~~n-~l~~ 279 (347)
T 4fmz_A 212 TDIT----PVAN-MTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN---A-VKDLTKLKMLNVGSN-QISD 279 (347)
T ss_dssp CCCG----GGGG-CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG---G-GTTCTTCCEEECCSS-CCCC
T ss_pred CCCc----hhhc-CCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh---h-HhcCCCcCEEEccCC-ccCC
Confidence 6655 3555 7888888888887755332 778888888888888776531 1 567888888888875 5666
Q ss_pred eeeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959 369 WTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 369 l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 412 (478)
++ ....+++|+.|++++|......|..+..+++|+.|++++|+
T Consensus 280 ~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 280 IS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp CG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred Ch-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 53 35677888888888887655566667778888888888876
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.2e-25 Score=233.45 Aligned_cols=270 Identities=18% Similarity=0.203 Sum_probs=205.7
Q ss_pred CccccCCCCeEeEEEecCCCCCcCCc-cCCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCcccchhh-hcc
Q 047959 126 CENFCKKFKHLRVLNLGSAVLDQYPP-GLENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDHSPEDI-WMM 202 (478)
Q Consensus 126 ~~~~~~~~~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~i-~~l 202 (478)
+..++..+++|++|++++|.++.++. .++.+++|++|++++|.+..+|+ .++++++|++|++++|.+..+|..+ +.+
T Consensus 67 p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l 146 (597)
T 3oja_B 67 PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT 146 (597)
T ss_dssp CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccC
Confidence 45566889999999999999986654 69999999999999999997765 4689999999999999999998764 899
Q ss_pred ccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCc----------------chh
Q 047959 203 QKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSY----------------YHS 265 (478)
Q Consensus 203 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~----------------~~~ 265 (478)
++|++|++++|.+....|..++.+++|++|++.++. ... .++.+++|+.|+++++.-. ...
T Consensus 147 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~ 224 (597)
T 3oja_B 147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN 224 (597)
T ss_dssp TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--CGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCC
T ss_pred CCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc--ChhhhhhhhhhhcccCccccccCCchhheeeccCCccc
Confidence 999999998888877777789999999999999987 332 2445666666666655200 000
Q ss_pred hHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeE
Q 047959 266 GVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLA 345 (478)
Q Consensus 266 ~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~ 345 (478)
.++. ...++|+.|++++ +.++..+ ++.. +++|+.|++++|.+.+..+..++.+++|+.|+|++|.+.+. .
T Consensus 225 ~~~~--~~~~~L~~L~L~~-n~l~~~~----~l~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l--~ 294 (597)
T 3oja_B 225 VVRG--PVNVELTILKLQH-NNLTDTA----WLLN-YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL--N 294 (597)
T ss_dssp EEEC--SCCSCCCEEECCS-SCCCCCG----GGGG-CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE--E
T ss_pred cccc--ccCCCCCEEECCC-CCCCCCh----hhcc-CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC--C
Confidence 0111 1124677777766 5555543 6777 88888888888888777777888888888888888877653 2
Q ss_pred EeCCCCCcccceeEEecCCCCCceeeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959 346 CVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 346 ~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 412 (478)
.. ...+++|+.|+|++| .+..+|.....+++|+.|++++|.. ..+| +..+++|+.|++++|+
T Consensus 295 ~~-~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~l-~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 295 LY-GQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSI-VTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CS-SSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCC-CCCC--CCTTCCCSEEECCSSC
T ss_pred cc-cccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCCC-CCcC--hhhcCCCCEEEeeCCC
Confidence 22 566888888888884 6677777777888899999988864 3443 5678899999999887
No 13
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=2.9e-25 Score=215.05 Aligned_cols=272 Identities=17% Similarity=0.196 Sum_probs=220.3
Q ss_pred CCCCeeeec-------CccccCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCC
Q 047959 117 KSDHLALIH-------CENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPS 189 (478)
Q Consensus 117 ~~~~lr~l~-------~~~~~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~ 189 (478)
.+++|+.|+ .-..+..+++|++|++++|.++.++ .+..+++|++|++++|.+..+|. +..+++|++|++++
T Consensus 64 ~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~ 141 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGA 141 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTT
T ss_pred hcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCC
Confidence 467777772 1112789999999999999998876 48999999999999999998886 88999999999999
Q ss_pred C-cCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhH
Q 047959 190 S-YIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGV 267 (478)
Q Consensus 190 ~-~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l 267 (478)
| .+..++ .+..+++|++|++++|......+ +..+++|++|++.++. ...+. +..+++|+.|+++++. .....
T Consensus 142 n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~--l~~~~ 215 (347)
T 4fmz_A 142 NHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQ--ITDIT 215 (347)
T ss_dssp CTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSC--CCCCG
T ss_pred CCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc-ccCCCccceeecccCC--CCCCc
Confidence 9 555554 48999999999997776543332 7889999999999998 44433 8899999999999984 22222
Q ss_pred HHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEe
Q 047959 268 SKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACV 347 (478)
Q Consensus 268 ~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 347 (478)
+ +..+++|+.|++++ +.++.+| .+.. +++|+.|++++|.++. .+.+..+++|+.|++++|.+.+.. .
T Consensus 216 ~--~~~~~~L~~L~l~~-n~l~~~~----~~~~-l~~L~~L~l~~n~l~~--~~~~~~l~~L~~L~l~~n~l~~~~---~ 282 (347)
T 4fmz_A 216 P--VANMTRLNSLKIGN-NKITDLS----PLAN-LSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDIS---V 282 (347)
T ss_dssp G--GGGCTTCCEEECCS-SCCCCCG----GGTT-CTTCCEEECCSSCCCC--CGGGTTCTTCCEEECCSSCCCCCG---G
T ss_pred h--hhcCCcCCEEEccC-CccCCCc----chhc-CCCCCEEECCCCccCC--ChhHhcCCCcCEEEccCCccCCCh---h
Confidence 2 77899999999998 7788777 4666 8999999999998865 367889999999999999887642 2
Q ss_pred CCCCCcccceeEEecCCCCCceeeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959 348 GCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 348 ~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 412 (478)
+..+++|+.|++++|.-....+...+.+++|+.|++++|+.. .++. +..+++|+.|++++|+
T Consensus 283 -~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 283 -LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT-DIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp -GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC-CCGG-GGGCTTCSEESSSCC-
T ss_pred -hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc-cccC-hhhhhccceeehhhhc
Confidence 678999999999997433344455678999999999999854 4444 7889999999999987
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=1.5e-25 Score=233.59 Aligned_cols=87 Identities=20% Similarity=0.286 Sum_probs=54.9
Q ss_pred cccCCCCeEeEEEecCCCCCcC-CccCCCCCCCceEeecCCCCCccc-hhhhCCCCCcEEeCCCCcCc--ccchhhhccc
Q 047959 128 NFCKKFKHLRVLNLGSAVLDQY-PPGLENLFYLKYLKLNIPSLKCLP-SLLCTLLNLQTLEMPSSYID--HSPEDIWMMQ 203 (478)
Q Consensus 128 ~~~~~~~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~--~lp~~i~~l~ 203 (478)
..+.++++|++|++++|.++.+ |..++++++|++|++++|.+..+| ..++++++|++|++++|.+. .+|..+++++
T Consensus 74 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~ 153 (606)
T 3vq2_A 74 KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153 (606)
T ss_dssp TTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCT
T ss_pred HHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcC
Confidence 3456666777777777766644 555666666777777666666544 45666666666666666554 3566666666
Q ss_pred cCcEEEeeCCC
Q 047959 204 KLMHLNFGSIT 214 (478)
Q Consensus 204 ~L~~L~l~~~~ 214 (478)
+|++|++++|.
T Consensus 154 ~L~~L~Ls~n~ 164 (606)
T 3vq2_A 154 NLVHVDLSYNY 164 (606)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEccCCc
Confidence 66666665553
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=2.9e-25 Score=227.10 Aligned_cols=131 Identities=18% Similarity=0.191 Sum_probs=66.6
Q ss_pred cCCCCCCEEEEEecCcccc-cCccccccccCCCCceEEEEEeecCCC--CCcCcccCCCCCCeEEEeeCcccCceeEEeC
Q 047959 272 CQLHKLECLKLVNEGKMRQ-LSRMILSEYKFPPSLTQLSLSNTELVE--DPMPTLEELPHLEVLKLKQNSYLERKLACVG 348 (478)
Q Consensus 272 ~~~~~L~~L~l~~~~~l~~-~p~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~ 348 (478)
..+++|+.|++++ +.++. +|. ++.. +++|+.|++++|.+++ ..+..++.+++|++|++++|.+.+..+...
T Consensus 321 ~~l~~L~~L~Ls~-n~l~~~~~~---~~~~-l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~- 394 (520)
T 2z7x_B 321 SKISPFLHLDFSN-NLLTDTVFE---NCGH-LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD- 394 (520)
T ss_dssp SSCCCCCEEECCS-SCCCTTTTT---TCCC-CSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS-
T ss_pred hhCCcccEEEeEC-CccChhhhh---hhcc-CCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch-
Confidence 4566777777776 44443 555 6666 6777777777776654 223345666677777776666654222111
Q ss_pred CCCCcccceeEEecCCCCCceeeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecC
Q 047959 349 CSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWP 411 (478)
Q Consensus 349 ~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 411 (478)
+..+++|++|+++++.--...+.... ++|+.|++++|. ++.+|..+..+++|+.|++++|
T Consensus 395 ~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASN 454 (520)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSS
T ss_pred hccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc-ccccchhhhcCCCCCEEECCCC
Confidence 33445555555555321112221111 344555554442 2344444444444555544444
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=2.2e-25 Score=237.44 Aligned_cols=283 Identities=14% Similarity=0.166 Sum_probs=204.2
Q ss_pred CCCCeeeec---------CccccCCCCeEeEEEecCCC-CC--cCCccCCCCC-------CCceEeecCCCCCccch--h
Q 047959 117 KSDHLALIH---------CENFCKKFKHLRVLNLGSAV-LD--QYPPGLENLF-------YLKYLKLNIPSLKCLPS--L 175 (478)
Q Consensus 117 ~~~~lr~l~---------~~~~~~~~~~L~~L~L~~~~-l~--~lp~~~~~l~-------~L~~L~l~~~~i~~lp~--~ 175 (478)
.+++|+.|+ ....+.++++|+.|++++|. ++ .+|..++.+. +|++|++++|.+..+|. .
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~ 568 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS 568 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhh
Confidence 467777772 23456788899999999997 77 3776555544 99999999999999988 8
Q ss_pred hhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCC-CcEeCcccCC-CCCccccCCCCC--C
Q 047959 176 LCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKN-LIFISALHPS-SCTPDILGRLPN--V 251 (478)
Q Consensus 176 ~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~-~~~~~~l~~l~~--L 251 (478)
++++++|++|++++|.+..+| .++.+++|++|++++|.+. .+|..+..+++ |+.|++.+|. ..++..+..++. |
T Consensus 569 l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L 646 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM 646 (876)
T ss_dssp HTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCE
T ss_pred hhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCC
Confidence 899999999999999888888 7888999999999888776 78888888888 9999998888 666666666544 8
Q ss_pred cEEEEEecCCcchhhHH---Hhcc--CCCCCCEEEEEecCcccccCccccccc-cCCCCceEEEEEeecCCCCCcCccc-
Q 047959 252 QTLRISGDLSYYHSGVS---KSLC--QLHKLECLKLVNEGKMRQLSRMILSEY-KFPPSLTQLSLSNTELVEDPMPTLE- 324 (478)
Q Consensus 252 ~~L~l~~~~~~~~~~l~---~~l~--~~~~L~~L~l~~~~~l~~~p~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~- 324 (478)
+.|++++|. ..+.++ ..+. .+++|+.|++++ +.+..+|. .+. . +++|+.|++++|.+.......+.
T Consensus 647 ~~L~Ls~N~--l~g~ip~l~~~l~~~~~~~L~~L~Ls~-N~L~~lp~---~~~~~-l~~L~~L~Ls~N~L~~ip~~~~~~ 719 (876)
T 4ecn_A 647 GSVDFSYNK--IGSEGRNISCSMDDYKGINASTVTLSY-NEIQKFPT---ELFAT-GSPISTIILSNNLMTSIPENSLKP 719 (876)
T ss_dssp EEEECCSSC--TTTTSSSCSSCTTTCCCCCEEEEECCS-SCCCSCCH---HHHHT-TCCCSEEECCSCCCSCCCTTSSSC
T ss_pred CEEECcCCc--CCCccccchhhhccccCCCcCEEEccC-CcCCccCH---HHHcc-CCCCCEEECCCCcCCccChHHhcc
Confidence 888888873 322222 1222 334778888876 66777776 544 4 77888888888876632222222
Q ss_pred ------CCCCCCeEEEeeCcccCceeEEeCCC--CCcccceeEEecCCCCCceeeCCCcccccceeEEec------CCCC
Q 047959 325 ------ELPHLEVLKLKQNSYLERKLACVGCS--SFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNP------CAYL 390 (478)
Q Consensus 325 ------~l~~L~~L~L~~~~~~~~~~~~~~~~--~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~------c~~l 390 (478)
++++|+.|+|++|.+.. .+.. +. .+++|+.|+|+++ .++.+|.....+++|+.|++++ |...
T Consensus 720 ~~~~l~nl~~L~~L~Ls~N~L~~-lp~~--l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~ 795 (876)
T 4ecn_A 720 KDGNYKNTYLLTTIDLRFNKLTS-LSDD--FRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRIL 795 (876)
T ss_dssp TTSCCTTGGGCCEEECCSSCCCC-CCGG--GSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCC
T ss_pred ccccccccCCccEEECCCCCCcc-chHH--hhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCccccccc
Confidence 23378888888777762 2221 33 6778888888774 5666777777778888888866 4445
Q ss_pred CCCccccCCCCCCCEEEEecCc
Q 047959 391 RKLPEEQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 391 ~~lp~~l~~l~~L~~L~l~~c~ 412 (478)
..+|..+.++++|+.|++++|.
T Consensus 796 ~~ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 796 RQWPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp CCCCTTGGGCSSCCEEECCSSC
T ss_pred ccChHHHhcCCCCCEEECCCCC
Confidence 6677777778888888887776
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=8.2e-26 Score=235.54 Aligned_cols=270 Identities=19% Similarity=0.158 Sum_probs=195.0
Q ss_pred eEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCccc-chhhhccccCcEEEeeC
Q 047959 135 HLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHS-PEDIWMMQKLMHLNFGS 212 (478)
Q Consensus 135 ~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~ 212 (478)
.|+.|++++|.++.++.. ++.+++|++|++++|.++.+|..+..+++|++|++++|.+..+ |..+..+++|++|++++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 688888888888766555 7788888888888888888888888888888888888877766 45677888888888877
Q ss_pred CCCCCCCCCC-CCCCCCCcEeCcccCC-CCC---ccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCc
Q 047959 213 ITLPAPPKNN-SSPLKNLIFISALHPS-SCT---PDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGK 287 (478)
Q Consensus 213 ~~~~~~~~~~-~~~l~~L~~L~l~~~~-~~~---~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~ 287 (478)
|.....+|.. +..+++|++|++.++. ... +..++.+++|++|++++| ...+..+..+..+++|+.|++++ +.
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~-n~ 411 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN--EPLSLKTEAFKECPQLELLDLAF-TR 411 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC--SCEEECTTTTTTCTTCSEEECTT-CC
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC--cCCcCCHHHhcCCccCCeEECCC-Cc
Confidence 7666555544 7788888888888776 222 556778888888888887 34445566677788888888876 55
Q ss_pred cccc-CccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEE-eCCCCCcccceeEEecCCC
Q 047959 288 MRQL-SRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLAC-VGCSSFPQLKILHLKSMLW 365 (478)
Q Consensus 288 l~~~-p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~ 365 (478)
+... |.. .+.. +++|+.|++++|.+.+..+..++.+++|++|++++|.+.+..+.. ..+..+++|++|++++| .
T Consensus 412 l~~~~~~~--~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~ 487 (606)
T 3t6q_A 412 LKVKDAQS--PFQN-LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-D 487 (606)
T ss_dssp EECCTTCC--TTTT-CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-C
T ss_pred CCCcccch--hhhC-cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-c
Confidence 5433 220 3666 788888888888877766777778888888888887776543221 11566778888888875 4
Q ss_pred CCce-eeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959 366 LEEW-TMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 366 l~~l-~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 412 (478)
++.+ |..++.+++|+.|++++|......|..+.++++| .|++++|.
T Consensus 488 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred cCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc
Confidence 5544 4556677888888888876666666677777777 77777764
No 18
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=6.5e-25 Score=226.51 Aligned_cols=97 Identities=16% Similarity=0.172 Sum_probs=78.0
Q ss_pred CCeeeec---------CccccCCCCeEeEEEecCCCCCcC-CccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCC
Q 047959 119 DHLALIH---------CENFCKKFKHLRVLNLGSAVLDQY-PPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMP 188 (478)
Q Consensus 119 ~~lr~l~---------~~~~~~~~~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~ 188 (478)
++++.|+ ....+..+++|++|++++|.++.+ |..++++++|++|++++|.++.+|.. .+++|++|+++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLS 129 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECC
Confidence 5666662 235668888999999999998855 56688899999999999998888876 78899999999
Q ss_pred CCcCcccc--hhhhccccCcEEEeeCCCCCC
Q 047959 189 SSYIDHSP--EDIWMMQKLMHLNFGSITLPA 217 (478)
Q Consensus 189 ~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~ 217 (478)
+|.+..+| ..++++++|++|++++|.+..
T Consensus 130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp SSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCCccccCchHhhcccCcccEEecCCCcccc
Confidence 99887764 678889999999998876543
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=4.3e-25 Score=230.10 Aligned_cols=276 Identities=17% Similarity=0.153 Sum_probs=229.9
Q ss_pred ccccCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCcc-chhhhCCCCCcEEeCCCCcCc-ccchh-hhccc
Q 047959 127 ENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSYID-HSPED-IWMMQ 203 (478)
Q Consensus 127 ~~~~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~-~lp~~-i~~l~ 203 (478)
...+..+++|++|++++|.++.+|..+..+++|++|++++|.+..+ |..+..+++|++|++++|.+. .+|.. +..++
T Consensus 271 ~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 271 SNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 4557889999999999999999999999999999999999999966 568999999999999999664 67654 88999
Q ss_pred cCcEEEeeCCCCCCCC--CCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEecCCcchhhHH-HhccCCCCCC
Q 047959 204 KLMHLNFGSITLPAPP--KNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHSGVS-KSLCQLHKLE 278 (478)
Q Consensus 204 ~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~-~~l~~~~~L~ 278 (478)
+|++|++++|.+.... +..+..+++|++|++.++. ...+..++.+++|+.|++++|. .....+ ..+..+++|+
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~ 428 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR--LKVKDAQSPFQNLHLLK 428 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC--EECCTTCCTTTTCTTCC
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc--CCCcccchhhhCcccCC
Confidence 9999999888776544 7789999999999999998 5556788999999999999983 333333 3478899999
Q ss_pred EEEEEecCcccc-cCccccccccCCCCceEEEEEeecCCCC---CcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcc
Q 047959 279 CLKLVNEGKMRQ-LSRMILSEYKFPPSLTQLSLSNTELVED---PMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQ 354 (478)
Q Consensus 279 ~L~l~~~~~l~~-~p~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 354 (478)
.|++++ +.+.. .|. .+.. +++|+.|++++|.+.+. ....++.+++|++|++++|.+.+..+.. +..+++
T Consensus 429 ~L~l~~-n~l~~~~~~---~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~ 501 (606)
T 3t6q_A 429 VLNLSH-SLLDISSEQ---LFDG-LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA--FTSLKM 501 (606)
T ss_dssp EEECTT-CCCBTTCTT---TTTT-CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT--TTTCTT
T ss_pred EEECCC-CccCCcCHH---HHhC-CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhh--hccccC
Confidence 999998 66654 455 7788 99999999999998763 2356889999999999999887554333 788999
Q ss_pred cceeEEecCCCCCceeeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959 355 LKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 355 L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 412 (478)
|++|+++++.-....+.....+++| .|++++|......|..+..+++|+.|++++||
T Consensus 502 L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 502 MNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp CCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred CCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 9999999964333455667788999 99999998776677778889999999999876
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=1.6e-25 Score=233.31 Aligned_cols=112 Identities=18% Similarity=0.167 Sum_probs=99.8
Q ss_pred ccccCCCCeEeEEEecCCCCCcC-CccCCCCCCCceEeecCCCCCcc-chhhhCCCCCcEEeCCCCcCcccc-hhhhccc
Q 047959 127 ENFCKKFKHLRVLNLGSAVLDQY-PPGLENLFYLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSYIDHSP-EDIWMMQ 203 (478)
Q Consensus 127 ~~~~~~~~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~ 203 (478)
...+.++++|++|++++|.++.+ |..++++++|++|++++|.+..+ |..++++++|++|++++|.+..++ ..+++++
T Consensus 49 ~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 128 (606)
T 3vq2_A 49 SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI 128 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT
T ss_pred hhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCC
Confidence 44678999999999999999966 56699999999999999999976 788999999999999999998887 6789999
Q ss_pred cCcEEEeeCCCCCC-CCCCCCCCCCCCcEeCcccCC
Q 047959 204 KLMHLNFGSITLPA-PPKNNSSPLKNLIFISALHPS 238 (478)
Q Consensus 204 ~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~ 238 (478)
+|++|++++|.+.. .+|..++++++|++|++.++.
T Consensus 129 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 99999998888765 678889999999999988775
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=4e-26 Score=229.47 Aligned_cols=273 Identities=15% Similarity=0.135 Sum_probs=214.1
Q ss_pred cCCCCeEeEEEecCCCCCcC-CccCCCCCCCceEeecCCCCC-cc-chhhhCCCCCcEEeCCCCcCccc-chhhhccccC
Q 047959 130 CKKFKHLRVLNLGSAVLDQY-PPGLENLFYLKYLKLNIPSLK-CL-PSLLCTLLNLQTLEMPSSYIDHS-PEDIWMMQKL 205 (478)
Q Consensus 130 ~~~~~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~i~-~l-p~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L 205 (478)
+.-.++|++|++++|.++.+ |..++++++|++|++++|.+. .+ |..+.++++|++|++++|.+..+ |..++++++|
T Consensus 26 p~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 105 (455)
T 3v47_A 26 PELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANL 105 (455)
T ss_dssp CCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTC
T ss_pred CCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccC
Confidence 33347899999999999955 777999999999999999987 55 45689999999999999988776 7789999999
Q ss_pred cEEEeeCCCCCCCCCCC--CCCCCCCcEeCcccCC-C-CCccc-cCCCCCCcEEEEEecCCcchhhHHHhc---------
Q 047959 206 MHLNFGSITLPAPPKNN--SSPLKNLIFISALHPS-S-CTPDI-LGRLPNVQTLRISGDLSYYHSGVSKSL--------- 271 (478)
Q Consensus 206 ~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~-~-~~~~~-l~~l~~L~~L~l~~~~~~~~~~l~~~l--------- 271 (478)
++|++++|.+....+.. +..+++|++|++.++. . ..+.. ++++++|++|++++|. ..+..+..+
T Consensus 106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK--VKSICEEDLLNFQGKHFT 183 (455)
T ss_dssp CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC--BSCCCTTTSGGGTTCEEE
T ss_pred CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc--ccccChhhhhcccccccc
Confidence 99999888776544433 8899999999999998 3 33544 8899999999999984 222222222
Q ss_pred -------------------------cCCCCCCEEEEEecCccc-ccCcccccc---------------------------
Q 047959 272 -------------------------CQLHKLECLKLVNEGKMR-QLSRMILSE--------------------------- 298 (478)
Q Consensus 272 -------------------------~~~~~L~~L~l~~~~~l~-~~p~~~~~~--------------------------- 298 (478)
..+++|+.|++++ +.+. ..|. .+
T Consensus 184 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 259 (455)
T 3v47_A 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG-NGFKESMAK---RFFDAIAGTKIQSLILSNSYNMGSSFGHT 259 (455)
T ss_dssp EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTT-SCCCHHHHH---HHHHHTTTCCEEEEECTTCTTTSCCTTCC
T ss_pred ccccccCcccccchhhccccccccccccceeeeEecCC-Ccccccchh---hhhccccccceeeEeeccccccccccchh
Confidence 2346788888876 4332 1111 10
Q ss_pred ----------c--cCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCC
Q 047959 299 ----------Y--KFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWL 366 (478)
Q Consensus 299 ----------~--~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 366 (478)
. . .++|+.|++++|.+.+..+..++.+++|++|++++|.+.+..+.. +..+++|++|+++++ .+
T Consensus 260 ~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls~N-~l 335 (455)
T 3v47_A 260 NFKDPDNFTFKGLE-ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA--FWGLTHLLKLNLSQN-FL 335 (455)
T ss_dssp SSCCCCTTTTGGGT-TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT--TTTCTTCCEEECCSS-CC
T ss_pred hhccCccccccccc-ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhH--hcCcccCCEEECCCC-cc
Confidence 0 1 268889999999887777788899999999999999887544322 678899999999995 56
Q ss_pred Cce-eeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959 367 EEW-TMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 367 ~~l-~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 412 (478)
+.+ +..+..+++|+.|++++|......|..+..+++|+.|++++|.
T Consensus 336 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp CEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 655 4556789999999999997666667888999999999999986
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=2.5e-26 Score=219.03 Aligned_cols=247 Identities=19% Similarity=0.228 Sum_probs=188.0
Q ss_pred CeEeEEEecCCCCC---cCCccCCCCCCCceEeecC-CCCC-ccchhhhCCCCCcEEeCCCCcCc-ccchhhhccccCcE
Q 047959 134 KHLRVLNLGSAVLD---QYPPGLENLFYLKYLKLNI-PSLK-CLPSLLCTLLNLQTLEMPSSYID-HSPEDIWMMQKLMH 207 (478)
Q Consensus 134 ~~L~~L~L~~~~l~---~lp~~~~~l~~L~~L~l~~-~~i~-~lp~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~ 207 (478)
.+++.|+++++.++ .+|..++++++|++|++++ |.+. .+|..++++++|++|++++|.+. .+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57899999999987 5888899999999999995 7777 88989999999999999999886 78888999999999
Q ss_pred EEeeCCCCCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCC-CCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEe
Q 047959 208 LNFGSITLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLP-NVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVN 284 (478)
Q Consensus 208 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~-~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~ 284 (478)
|++++|.+...+|..+..+++|++|++.++. +..+..+..++ +|+.|++++| ...+..+..+..++ |+.|++++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N--~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN--RLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS--EEEEECCGGGGGCC-CSEEECCS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC--eeeccCChHHhCCc-ccEEECcC
Confidence 9998888877888888888899999888887 46777777777 8888888887 45555566666665 88888876
Q ss_pred cCccc-ccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecC
Q 047959 285 EGKMR-QLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSM 363 (478)
Q Consensus 285 ~~~l~-~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 363 (478)
+.++ ..|. .+.. +++|+.|++++|.+++..+ .+..+++|++|++++|.+.+..+.. +..+++|++|+++++
T Consensus 207 -N~l~~~~~~---~~~~-l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~--l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 207 -NMLEGDASV---LFGS-DKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQG--LTQLKFLHSLNVSFN 278 (313)
T ss_dssp -SEEEECCGG---GCCT-TSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGG--GGGCTTCCEEECCSS
T ss_pred -CcccCcCCH---HHhc-CCCCCEEECCCCceeeecC-cccccCCCCEEECcCCcccCcCChH--HhcCcCCCEEECcCC
Confidence 5555 4455 5666 7788888888877654333 3666777888888777776544333 566777777777774
Q ss_pred CCCC-ceeeCCCcccccceeEEecCCCCCCC
Q 047959 364 LWLE-EWTMGAGAMPKLESLILNPCAYLRKL 393 (478)
Q Consensus 364 ~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~l 393 (478)
.++ .+|.. +.+++|+.|++.+|+.+...
T Consensus 279 -~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 279 -NLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp -EEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred -cccccCCCC-ccccccChHHhcCCCCccCC
Confidence 344 45443 66777777777777755443
No 23
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=1.1e-24 Score=209.40 Aligned_cols=262 Identities=19% Similarity=0.207 Sum_probs=206.1
Q ss_pred eEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCccc-chhhhccccCcEEEeeC
Q 047959 135 HLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDHS-PEDIWMMQKLMHLNFGS 212 (478)
Q Consensus 135 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~ 212 (478)
++++++++++.++.+|..+. ++|++|++++|.++.++. .++++++|++|++++|.+..+ |..+..+++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 68889999988888887654 588999999999987775 688899999999999988777 67788999999999977
Q ss_pred CCCCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccc
Q 047959 213 ITLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQ 290 (478)
Q Consensus 213 ~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~ 290 (478)
|.+. .+|..+. ++|++|++.++. ...+..+.++++|+.|+++++.-...+..+..+..+++|+.|++++ +.++.
T Consensus 110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~-n~l~~ 185 (330)
T 1xku_A 110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD-TNITT 185 (330)
T ss_dssp SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS-SCCCS
T ss_pred CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC-Ccccc
Confidence 7655 5665554 789999988887 3344458889999999999884222234556778889999999987 77888
Q ss_pred cCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCcee
Q 047959 291 LSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWT 370 (478)
Q Consensus 291 ~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~ 370 (478)
+|. .+ .++|+.|++++|.+++..+..+..+++|++|++++|.+.+..... +..+++|++|+++++ .++.+|
T Consensus 186 l~~---~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~lp 256 (330)
T 1xku_A 186 IPQ---GL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS--LANTPHLRELHLNNN-KLVKVP 256 (330)
T ss_dssp CCS---SC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT--GGGSTTCCEEECCSS-CCSSCC
T ss_pred CCc---cc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhh--ccCCCCCCEEECCCC-cCccCC
Confidence 886 33 478999999999887777778889999999999988876543222 567889999999985 677888
Q ss_pred eCCCcccccceeEEecCCCCCCCc-cccC------CCCCCCEEEEecCc
Q 047959 371 MGAGAMPKLESLILNPCAYLRKLP-EEQW------CIKSLCKLELHWPQ 412 (478)
Q Consensus 371 ~~~~~~~~L~~L~l~~c~~l~~lp-~~l~------~l~~L~~L~l~~c~ 412 (478)
.....+++|+.|++++|.. +.+| ..+. ..++|+.+++.++|
T Consensus 257 ~~l~~l~~L~~L~l~~N~i-~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 257 GGLADHKYIQVVYLHNNNI-SAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp TTTTTCSSCCEEECCSSCC-CCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred hhhccCCCcCEEECCCCcC-CccChhhcCCcccccccccccceEeecCc
Confidence 8888899999999999864 4443 2222 35788999999987
No 24
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=1.4e-24 Score=213.67 Aligned_cols=252 Identities=19% Similarity=0.213 Sum_probs=193.3
Q ss_pred CCCCeeeec---------CccccCCCCeEeEEEecCCCCCcCCc-cCCCCCCCceEeecCCCCCccchh-hhCCCCCcEE
Q 047959 117 KSDHLALIH---------CENFCKKFKHLRVLNLGSAVLDQYPP-GLENLFYLKYLKLNIPSLKCLPSL-LCTLLNLQTL 185 (478)
Q Consensus 117 ~~~~lr~l~---------~~~~~~~~~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L 185 (478)
.+++|+.|+ ....+..+++|++|++++|.++.++. .++++++|++|++++|.+..+|.. +.++++|++|
T Consensus 67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 146 (390)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEE
Confidence 467788772 23466889999999999999986654 488999999999999999998877 4889999999
Q ss_pred eCCCCcCcccc-hhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcc-------------------cCC-CCCccc
Q 047959 186 EMPSSYIDHSP-EDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISAL-------------------HPS-SCTPDI 244 (478)
Q Consensus 186 ~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~-------------------~~~-~~~~~~ 244 (478)
++++|.+..++ ..+..+++|++|++++|.+... .+..+++|+.|++. ++. ...+.
T Consensus 147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~- 222 (390)
T 3o6n_A 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG- 222 (390)
T ss_dssp ECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC-
T ss_pred ECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccccCCCCcceEEECCCCeeeeccc-
Confidence 99999888875 4588899999999988765532 23344555555444 443 22211
Q ss_pred cCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccccc-CccccccccCCCCceEEEEEeecCCCCCcCcc
Q 047959 245 LGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQL-SRMILSEYKFPPSLTQLSLSNTELVEDPMPTL 323 (478)
Q Consensus 245 l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~-p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 323 (478)
...++|+.|+++++. ..+. ..+..+++|+.|++++ +.++.+ |. .+.. +++|+.|++++|.+++ .+...
T Consensus 223 -~~~~~L~~L~l~~n~--l~~~--~~l~~l~~L~~L~Ls~-n~l~~~~~~---~~~~-l~~L~~L~L~~n~l~~-~~~~~ 291 (390)
T 3o6n_A 223 -PVNVELTILKLQHNN--LTDT--AWLLNYPGLVEVDLSY-NELEKIMYH---PFVK-MQRLERLYISNNRLVA-LNLYG 291 (390)
T ss_dssp -CCCSSCCEEECCSSC--CCCC--GGGGGCTTCSEEECCS-SCCCEEESG---GGTT-CSSCCEEECCSSCCCE-EECSS
T ss_pred -cccccccEEECCCCC--Cccc--HHHcCCCCccEEECCC-CcCCCcChh---Hccc-cccCCEEECCCCcCcc-cCccc
Confidence 234688899998884 2222 4678899999999998 677755 66 7888 9999999999999865 34455
Q ss_pred cCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceeeCCCcccccceeEEecCCC
Q 047959 324 EELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAY 389 (478)
Q Consensus 324 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~ 389 (478)
..+++|++|++++|.+...... +..+++|+.|+++++ .++.++ ...+++|+.|++++|+.
T Consensus 292 ~~l~~L~~L~L~~n~l~~~~~~---~~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 292 QPIPTLKVLDLSHNHLLHVERN---QPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp SCCTTCCEEECCSSCCCCCGGG---HHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSCE
T ss_pred CCCCCCCEEECCCCcceecCcc---ccccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCCCc
Confidence 7899999999999988743322 467899999999995 577765 67899999999999974
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=8.2e-25 Score=223.71 Aligned_cols=152 Identities=20% Similarity=0.243 Sum_probs=87.5
Q ss_pred CCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccc---cCccccccccCCCCceEEEEEeecCCCCCc-Cc
Q 047959 247 RLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQ---LSRMILSEYKFPPSLTQLSLSNTELVEDPM-PT 322 (478)
Q Consensus 247 ~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~---~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~ 322 (478)
.+++|++|++++| ...+..+..+..+++|+.|++++ +.++. +|. .+.. +++|+.|++++|.+.+..+ ..
T Consensus 322 ~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~---~~~~-l~~L~~L~Ls~N~l~~~l~~~~ 394 (520)
T 2z7x_B 322 KISPFLHLDFSNN--LLTDTVFENCGHLTELETLILQM-NQLKELSKIAE---MTTQ-MKSLQQLDISQNSVSYDEKKGD 394 (520)
T ss_dssp SCCCCCEEECCSS--CCCTTTTTTCCCCSSCCEEECCS-SCCCBHHHHHH---HHTT-CTTCCEEECCSSCCBCCGGGCS
T ss_pred hCCcccEEEeECC--ccChhhhhhhccCCCCCEEEccC-CccCccccchH---HHhh-CCCCCEEECCCCcCCcccccch
Confidence 4445555555555 33334455566666666666665 55542 333 4555 6666666666666655222 23
Q ss_pred ccCCCCCCeEEEeeCcccCceeEEeCCCCC-cccceeEEecCCCCCceeeCCCcccccceeEEecCCCCCCCccc-cCCC
Q 047959 323 LEELPHLEVLKLKQNSYLERKLACVGCSSF-PQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEE-QWCI 400 (478)
Q Consensus 323 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~-l~~l 400 (478)
+..+++|++|++++|.+.+..+. .+ ++|+.|+++++ .++.+|.....+++|+.|++++|. ++.+|.. +..+
T Consensus 395 ~~~l~~L~~L~Ls~N~l~~~~~~-----~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l 467 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSNILTDTIFR-----CLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRL 467 (520)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGG-----SCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred hccCccCCEEECcCCCCCcchhh-----hhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCCc-CCccCHHHhccC
Confidence 55666666666666666543321 22 56666666663 555666555566666666666664 3455553 5566
Q ss_pred CCCCEEEEecCc
Q 047959 401 KSLCKLELHWPQ 412 (478)
Q Consensus 401 ~~L~~L~l~~c~ 412 (478)
++|+.|++++|+
T Consensus 468 ~~L~~L~l~~N~ 479 (520)
T 2z7x_B 468 TSLQKIWLHTNP 479 (520)
T ss_dssp TTCCEEECCSSC
T ss_pred CcccEEECcCCC
Confidence 666666666644
No 26
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=5.5e-25 Score=227.54 Aligned_cols=136 Identities=15% Similarity=0.106 Sum_probs=63.5
Q ss_pred HhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCc-CcccCCCCCCeEEEeeCcccCceeEEe
Q 047959 269 KSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPM-PTLEELPHLEVLKLKQNSYLERKLACV 347 (478)
Q Consensus 269 ~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~~ 347 (478)
..+..+++|+.|++++ +.+..+|. .+.. +++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..
T Consensus 367 ~~~~~~~~L~~L~l~~-n~l~~~~~---~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~- 440 (570)
T 2z63_A 367 QSDFGTTSLKYLDLSF-NGVITMSS---NFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI- 440 (570)
T ss_dssp HHHHTCSCCCEEECCS-CSEEEEEE---EEET-CTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTT-
T ss_pred ccccccCccCEEECCC-Cccccccc---cccc-cCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhh-
Confidence 3344555666666655 44444443 3444 5555555555555443322 23445555555555554443322111
Q ss_pred CCCCCcccceeEEecCCCC-CceeeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecC
Q 047959 348 GCSSFPQLKILHLKSMLWL-EEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWP 411 (478)
Q Consensus 348 ~~~~~~~L~~L~L~~~~~l-~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 411 (478)
+..+++|++|++++|.-. ..+|.....+++|+.|++++|......|..+..+++|+.|++++|
T Consensus 441 -~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 441 -FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp -TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred -hhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence 344455555555543211 134444444555555555555433333444445555555555554
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=3.3e-24 Score=216.03 Aligned_cols=260 Identities=21% Similarity=0.232 Sum_probs=120.4
Q ss_pred cCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEE
Q 047959 130 CKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLN 209 (478)
Q Consensus 130 ~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 209 (478)
+..+++|++|++++|.++.++. ++++++|++|++++|.+..+|. +..+++|++|++++|.+..++. +..+++|++|+
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 162 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLS 162 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEE
T ss_pred hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChh-hccCCcccEee
Confidence 3444445555555444444433 4444455555555544444432 4444555555555444444432 34444444444
Q ss_pred eeCCCCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccc
Q 047959 210 FGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMR 289 (478)
Q Consensus 210 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~ 289 (478)
++ +.... .+ .+..+++|+.|++.++.-.....+..+++|+.|+++++. ..+..+ +..+++|+.|++++ +.++
T Consensus 163 l~-~~~~~-~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~--l~~~~~--~~~l~~L~~L~l~~-n~l~ 234 (466)
T 1o6v_A 163 FG-NQVTD-LK-PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ--ISDITP--LGILTNLDELSLNG-NQLK 234 (466)
T ss_dssp EE-ESCCC-CG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC--CCCCGG--GGGCTTCCEEECCS-SCCC
T ss_pred cC-CcccC-ch-hhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCc--cccccc--ccccCCCCEEECCC-CCcc
Confidence 42 21111 11 255556666666666551112335556666666666652 211111 34455566666655 4444
Q ss_pred ccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeE-------------------EeCCC
Q 047959 290 QLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLA-------------------CVGCS 350 (478)
Q Consensus 290 ~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~-------------------~~~~~ 350 (478)
.++ .+.. +++|+.|++++|.+.+.. .+..+++|+.|++++|.+.+.... .. +.
T Consensus 235 ~~~----~l~~-l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~ 306 (466)
T 1o6v_A 235 DIG----TLAS-LTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP-IS 306 (466)
T ss_dssp CCG----GGGG-CTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG-GG
T ss_pred cch----hhhc-CCCCCEEECCCCccccch--hhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh-hc
Confidence 443 3444 555555555555543321 144445555555554444332210 00 23
Q ss_pred CCcccceeEEecCCCCCceeeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959 351 SFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 351 ~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 412 (478)
.+++|+.|++++| .++.++. ...+++|+.|++++|. ++.++ .+..+++|+.|++++|+
T Consensus 307 ~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 307 NLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp GCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECcCC-cCCCchh-hccCccCCEeECCCCc-cCCch-hhccCCCCCEEeCCCCc
Confidence 4445555555543 2333222 3455555555555553 33332 35556666666666654
No 28
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=2.1e-24 Score=207.69 Aligned_cols=261 Identities=19% Similarity=0.195 Sum_probs=176.7
Q ss_pred eEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccc-hhhhCCCCCcEEeCCCCcCccc-chhhhccccCcEEEeeC
Q 047959 135 HLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLP-SLLCTLLNLQTLEMPSSYIDHS-PEDIWMMQKLMHLNFGS 212 (478)
Q Consensus 135 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~ 212 (478)
.+++++++++.++.+|..+. ++|++|++++|.+..++ ..+.++++|++|++++|.+..+ |..+.++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 56777887777777776653 57788888887777664 4677778888888888777666 56677778888888866
Q ss_pred CCCCCCCCCCCCCCCCCcEeCcccCC-CCCc-cccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccc
Q 047959 213 ITLPAPPKNNSSPLKNLIFISALHPS-SCTP-DILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQ 290 (478)
Q Consensus 213 ~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~ 290 (478)
|.+. .+|..+. ++|++|++.++. ...+ ..+.++++|+.|+++++.-...+..+..+..+ +|+.|++++ +.++.
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~-n~l~~ 186 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE-AKLTG 186 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS-SBCSS
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC-CCCCc
Confidence 6554 5555544 677888877776 3333 34677788888888777311122344555555 777777776 66777
Q ss_pred cCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCcee
Q 047959 291 LSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWT 370 (478)
Q Consensus 291 ~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~ 370 (478)
+|. .+ .++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..... +..+++|++|+++++ .++.+|
T Consensus 187 l~~---~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~lp 257 (332)
T 2ft3_A 187 IPK---DL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS--LSFLPTLRELHLDNN-KLSRVP 257 (332)
T ss_dssp CCS---SS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG--GGGCTTCCEEECCSS-CCCBCC
T ss_pred cCc---cc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH--hhCCCCCCEEECCCC-cCeecC
Confidence 775 33 357777888888776666667777788888888877766543322 456777888888774 666777
Q ss_pred eCCCcccccceeEEecCCCCCCCc-cccCC------CCCCCEEEEecCc
Q 047959 371 MGAGAMPKLESLILNPCAYLRKLP-EEQWC------IKSLCKLELHWPQ 412 (478)
Q Consensus 371 ~~~~~~~~L~~L~l~~c~~l~~lp-~~l~~------l~~L~~L~l~~c~ 412 (478)
.....+++|+.|++++|.. +.+| ..+.. .++|+.|++.++|
T Consensus 258 ~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 258 AGLPDLKLLQVVYLHTNNI-TKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp TTGGGCTTCCEEECCSSCC-CBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred hhhhcCccCCEEECCCCCC-CccChhHccccccccccccccceEeecCc
Confidence 7677777888888887753 3333 22222 4667778887776
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=3.2e-24 Score=231.36 Aligned_cols=109 Identities=19% Similarity=0.196 Sum_probs=53.4
Q ss_pred cCCCCeEeEEEecCCC-CCcC-CccCCCCCCCceEeecCCCCCcc-chhhhCCCCCcEEeCCCCcCcc-cchh--hhccc
Q 047959 130 CKKFKHLRVLNLGSAV-LDQY-PPGLENLFYLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSYIDH-SPED--IWMMQ 203 (478)
Q Consensus 130 ~~~~~~L~~L~L~~~~-l~~l-p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~-lp~~--i~~l~ 203 (478)
+.++++|++|+|++|. +..+ |..++++++|++|++++|.+..+ |..++++++|++|++++|.+.. +|.. +.+++
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~ 123 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence 4455555555555553 2233 34455555555555555555533 4445555555555555554433 2332 44555
Q ss_pred cCcEEEeeCCCCCCCCC-CCCCCCCCCcEeCcccCC
Q 047959 204 KLMHLNFGSITLPAPPK-NNSSPLKNLIFISALHPS 238 (478)
Q Consensus 204 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~ 238 (478)
+|++|++++|.+....+ ..++++++|++|++.++.
T Consensus 124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred CCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 55555555554433222 234555555555555543
No 30
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=1.6e-24 Score=223.11 Aligned_cols=132 Identities=17% Similarity=0.142 Sum_probs=97.7
Q ss_pred cccCCCCeEeEEEecCCCCCcCC-ccCCCCCCCceEeecCCCCCccchh-hhCCCCCcEEeCCCCcCcc--cchhhhccc
Q 047959 128 NFCKKFKHLRVLNLGSAVLDQYP-PGLENLFYLKYLKLNIPSLKCLPSL-LCTLLNLQTLEMPSSYIDH--SPEDIWMMQ 203 (478)
Q Consensus 128 ~~~~~~~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~--lp~~i~~l~ 203 (478)
..+..+++|++|++++|.++.++ ..++++++|++|++++|.+..+|.. ++++++|++|++++|.+.. .|..+++++
T Consensus 44 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 44 GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123 (549)
T ss_dssp STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT
T ss_pred hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccC
Confidence 44678888888888888887554 5688888888888888888876654 8888888888888887764 356678888
Q ss_pred cCcEEEeeCCCCCCCCC-CCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEec
Q 047959 204 KLMHLNFGSITLPAPPK-NNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGD 259 (478)
Q Consensus 204 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~ 259 (478)
+|++|++++|.....+| ..+..+++|++|++.++. ...+..++.+++|+.|+++.+
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 88888887776444454 467888888888888777 345556666665555555554
No 31
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=1.1e-24 Score=224.26 Aligned_cols=148 Identities=16% Similarity=0.128 Sum_probs=121.5
Q ss_pred CeEeEEEecCCCCCcC-CccCCCCCCCceEeecCCCCCccc-hhhhCCCCCcEEeCCCCcCcccchh-hhccccCcEEEe
Q 047959 134 KHLRVLNLGSAVLDQY-PPGLENLFYLKYLKLNIPSLKCLP-SLLCTLLNLQTLEMPSSYIDHSPED-IWMMQKLMHLNF 210 (478)
Q Consensus 134 ~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 210 (478)
+.|++|++++|.++.+ |..+.++++|++|++++|.+..++ ..++.+++|++|++++|.+..+|.. ++++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 6799999999999955 567999999999999999999666 6799999999999999999888765 999999999999
Q ss_pred eCCCCCC-CCCCCCCCCCCCcEeCcccCC--CCCc-cccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEE
Q 047959 211 GSITLPA-PPKNNSSPLKNLIFISALHPS--SCTP-DILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLV 283 (478)
Q Consensus 211 ~~~~~~~-~~~~~~~~l~~L~~L~l~~~~--~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~ 283 (478)
++|.+.. ..|..++++++|++|++.++. ...+ ..++++++|++|+++++. ..+..+..+..+++|+.|+++
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS--LRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT--CCEECTTTTTTCSEEEEEEEE
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc--ccccChhhhhccccCceEecc
Confidence 8887765 567789999999999999986 3343 578999999999999984 444444455444444444444
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=7.4e-24 Score=228.58 Aligned_cols=280 Identities=18% Similarity=0.140 Sum_probs=204.2
Q ss_pred ccccCCCCeEeEEEecCCCCCcC-CccCCCCCCCceEeecCCC-CCcc-chhhhCCCCCcEEeCCCCcCccc-chhhhcc
Q 047959 127 ENFCKKFKHLRVLNLGSAVLDQY-PPGLENLFYLKYLKLNIPS-LKCL-PSLLCTLLNLQTLEMPSSYIDHS-PEDIWMM 202 (478)
Q Consensus 127 ~~~~~~~~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~-i~~l-p~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l 202 (478)
..++...+++++|+|++|.++.+ |..+.++++|++|++++|. +..+ |..+.++++|++|++++|.+..+ |..+.++
T Consensus 17 ~~vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l 96 (844)
T 3j0a_A 17 TQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL 96 (844)
T ss_dssp SCCCSSCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC
T ss_pred CCCCCCCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC
Confidence 34455557899999999999854 6779999999999999995 4466 67899999999999999988877 7889999
Q ss_pred ccCcEEEeeCCCCCCCCCCC--CCCCCCCcEeCcccCC-CCC--ccccCCCCCCcEEEEEecCCcchhhHHHhccCC--C
Q 047959 203 QKLMHLNFGSITLPAPPKNN--SSPLKNLIFISALHPS-SCT--PDILGRLPNVQTLRISGDLSYYHSGVSKSLCQL--H 275 (478)
Q Consensus 203 ~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~-~~~--~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~--~ 275 (478)
++|++|++++|.+....|.. +.++++|++|++++|. ... +..++++++|++|+++++. .....+..+..+ +
T Consensus 97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~--i~~~~~~~l~~l~~~ 174 (844)
T 3j0a_A 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ--IFLVCEHELEPLQGK 174 (844)
T ss_dssp SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC--CCCCCSGGGHHHHHC
T ss_pred cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc--CCeeCHHHcccccCC
Confidence 99999999988887766655 8999999999999998 332 3578999999999999984 222222222222 3
Q ss_pred C------------------------------CCEEEEEecCccc-ccCcccc----------------------------
Q 047959 276 K------------------------------LECLKLVNEGKMR-QLSRMIL---------------------------- 296 (478)
Q Consensus 276 ~------------------------------L~~L~l~~~~~l~-~~p~~~~---------------------------- 296 (478)
+ |+.|++++ +.+. ..|..+.
T Consensus 175 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~ 253 (844)
T 3j0a_A 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG-NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253 (844)
T ss_dssp SSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSS-CCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST
T ss_pred ccceEECCCCccccccccchhhcCCccccCceeEEecCC-CcCchhHHHHHHhhcCcccccceecccccccccccccccC
Confidence 3 55555554 2221 1111000
Q ss_pred -----cccc-CCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCce-
Q 047959 297 -----SEYK-FPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEW- 369 (478)
Q Consensus 297 -----~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l- 369 (478)
.+.. ..++|+.|++++|.+....+..++.+++|+.|+|++|.+.+..+.. +.++++|++|+++++ .++.+
T Consensus 254 ~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~Ls~N-~l~~~~ 330 (844)
T 3j0a_A 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA--FYGLDNLQVLNLSYN-LLGELY 330 (844)
T ss_dssp TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTT--TTTCSSCCEEEEESC-CCSCCC
T ss_pred CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHH--hcCCCCCCEEECCCC-CCCccC
Confidence 0000 0256778888877776666667788888888888888776543322 677888999999885 45544
Q ss_pred eeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959 370 TMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 370 ~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 412 (478)
+..+..+++|+.|++++|......+..+.++++|+.|++++|.
T Consensus 331 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp SCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred HHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence 5567788899999999886433334567788999999998876
No 33
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=1.5e-24 Score=208.56 Aligned_cols=262 Identities=16% Similarity=0.178 Sum_probs=212.0
Q ss_pred CeEeEEEecCCCCCcCCc-cCCCCCCCceEeecCCCCCcc-chhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEee
Q 047959 134 KHLRVLNLGSAVLDQYPP-GLENLFYLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFG 211 (478)
Q Consensus 134 ~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 211 (478)
+.+++|++++|.++.++. .++++++|++|++++|.+..+ |..++.+++|++|++++|.+..+|..+. ++|++|+++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECC
Confidence 578999999999997766 599999999999999999976 7889999999999999999999987665 799999998
Q ss_pred CCCCCCCCCCCCCCCCCCcEeCcccCC-C---CCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCc
Q 047959 212 SITLPAPPKNNSSPLKNLIFISALHPS-S---CTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGK 287 (478)
Q Consensus 212 ~~~~~~~~~~~~~~l~~L~~L~l~~~~-~---~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~ 287 (478)
+|.+....+..+..+++|++|++.++. . ..+..+.++++|+.|+++++. ...++..+ .++|+.|++++ +.
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~---l~~l~~~~--~~~L~~L~l~~-n~ 203 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN---ITTIPQGL--PPSLTELHLDG-NK 203 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC---CCSCCSSC--CTTCSEEECTT-SC
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc---cccCCccc--cccCCEEECCC-Cc
Confidence 887765555668899999999999887 2 556778899999999999984 22333333 37999999998 77
Q ss_pred cccc-CccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCC
Q 047959 288 MRQL-SRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWL 366 (478)
Q Consensus 288 l~~~-p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 366 (478)
++.+ |. .+.. +++|+.|++++|.+++.....+..+++|++|++++|.+.... . . +..+++|++|+++++ .+
T Consensus 204 l~~~~~~---~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp-~-~-l~~l~~L~~L~l~~N-~i 275 (330)
T 1xku_A 204 ITKVDAA---SLKG-LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-G-G-LADHKYIQVVYLHNN-NI 275 (330)
T ss_dssp CCEECTG---GGTT-CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCC-T-T-TTTCSSCCEEECCSS-CC
T ss_pred CCccCHH---HhcC-CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCC-h-h-hccCCCcCEEECCCC-cC
Confidence 7766 45 6788 999999999999988777778899999999999999887322 2 2 678899999999984 67
Q ss_pred CceeeCCC-------cccccceeEEecCCCCC--CCccccCCCCCCCEEEEecC
Q 047959 367 EEWTMGAG-------AMPKLESLILNPCAYLR--KLPEEQWCIKSLCKLELHWP 411 (478)
Q Consensus 367 ~~l~~~~~-------~~~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~c 411 (478)
+.++.... ..+.|+.|++.+|+... ..|..+..+++++.++++++
T Consensus 276 ~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 276 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 76654321 35789999999998643 44567888999999999875
No 34
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=1.1e-25 Score=214.52 Aligned_cols=243 Identities=16% Similarity=0.159 Sum_probs=213.9
Q ss_pred CCCceEeecCCCCC---ccchhhhCCCCCcEEeCCC-CcC-cccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcE
Q 047959 157 FYLKYLKLNIPSLK---CLPSLLCTLLNLQTLEMPS-SYI-DHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIF 231 (478)
Q Consensus 157 ~~L~~L~l~~~~i~---~lp~~~~~l~~L~~L~l~~-~~l-~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 231 (478)
.+++.|+++++.+. .+|..++++++|++|++++ +.+ ..+|..++++++|++|++++|.+...+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 58999999999998 6899999999999999995 655 478999999999999999999888788989999999999
Q ss_pred eCcccCC--CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCC-CCCEEEEEecCccc-ccCccccccccCCCCceE
Q 047959 232 ISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLH-KLECLKLVNEGKMR-QLSRMILSEYKFPPSLTQ 307 (478)
Q Consensus 232 L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~-~L~~L~l~~~~~l~-~~p~~~~~~~~~~~~L~~ 307 (478)
|++.++. ...+..+..+++|++|++++| ...+.++..+..++ +|+.|++++ +.+. .+|. .+.. ++ |+.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N--~l~~~~p~~l~~l~~~L~~L~L~~-N~l~~~~~~---~~~~-l~-L~~ 201 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGN--RISGAIPDSYGSFSKLFTSMTISR-NRLTGKIPP---TFAN-LN-LAF 201 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSS--CCEEECCGGGGCCCTTCCEEECCS-SEEEEECCG---GGGG-CC-CSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCC--cccCcCCHHHhhhhhcCcEEECcC-CeeeccCCh---HHhC-Cc-ccE
Confidence 9999998 578889999999999999998 56667788888888 999999998 6666 7787 7888 66 999
Q ss_pred EEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCC-ceeeCCCcccccceeEEec
Q 047959 308 LSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLE-EWTMGAGAMPKLESLILNP 386 (478)
Q Consensus 308 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~-~l~~~~~~~~~L~~L~l~~ 386 (478)
|++++|.+++..+..++.+++|+.|++++|.+.+..+. +..+++|++|+++++ .++ .+|..+..+++|+.|++++
T Consensus 202 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK---VGLSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSF 277 (313)
T ss_dssp EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG---CCCCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCS
T ss_pred EECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc---ccccCCCCEEECcCC-cccCcCChHHhcCcCCCEEECcC
Confidence 99999999888888999999999999999998765443 567899999999996 455 7787888999999999999
Q ss_pred CCCCCCCccccCCCCCCCEEEEecCc
Q 047959 387 CAYLRKLPEEQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 387 c~~l~~lp~~l~~l~~L~~L~l~~c~ 412 (478)
|...+.+|.. ..+++|+.+++.+++
T Consensus 278 N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 278 NNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp SEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred CcccccCCCC-ccccccChHHhcCCC
Confidence 9877788875 789999999998876
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=3.5e-24 Score=222.39 Aligned_cols=252 Identities=19% Similarity=0.204 Sum_probs=193.8
Q ss_pred CCCCeeeec---------CccccCCCCeEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCCccchh-hhCCCCCcEE
Q 047959 117 KSDHLALIH---------CENFCKKFKHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCLPSL-LCTLLNLQTL 185 (478)
Q Consensus 117 ~~~~lr~l~---------~~~~~~~~~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L 185 (478)
.+++|++|+ ....+..+++|++|+|++|.++.+|.. ++++++|++|++++|.+..+|.. ++++++|++|
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence 467788882 334668899999999999999866654 78999999999999999988876 4889999999
Q ss_pred eCCCCcCcccch-hhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccC-------------------C-CCCccc
Q 047959 186 EMPSSYIDHSPE-DIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHP-------------------S-SCTPDI 244 (478)
Q Consensus 186 ~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-------------------~-~~~~~~ 244 (478)
++++|.+..++. .++.+++|++|++++|.+... .++.+++|+.|++.++ . ...+..
T Consensus 153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~ 229 (597)
T 3oja_B 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP 229 (597)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS
T ss_pred EeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc
Confidence 999998877754 588999999999987766542 1334455555554444 3 111211
Q ss_pred cCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccccc-CccccccccCCCCceEEEEEeecCCCCCcCcc
Q 047959 245 LGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQL-SRMILSEYKFPPSLTQLSLSNTELVEDPMPTL 323 (478)
Q Consensus 245 l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~-p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 323 (478)
..++|+.|++++|. ..+ +..+..+++|+.|++++ +.+..+ |. .++. +++|+.|++++|.+++ .+..+
T Consensus 230 --~~~~L~~L~L~~n~--l~~--~~~l~~l~~L~~L~Ls~-N~l~~~~~~---~~~~-l~~L~~L~Ls~N~l~~-l~~~~ 297 (597)
T 3oja_B 230 --VNVELTILKLQHNN--LTD--TAWLLNYPGLVEVDLSY-NELEKIMYH---PFVK-MQRLERLYISNNRLVA-LNLYG 297 (597)
T ss_dssp --CCSCCCEEECCSSC--CCC--CGGGGGCTTCSEEECCS-SCCCEEESG---GGTT-CSSCCEEECTTSCCCE-EECSS
T ss_pred --cCCCCCEEECCCCC--CCC--ChhhccCCCCCEEECCC-CccCCCCHH---HhcC-ccCCCEEECCCCCCCC-CCccc
Confidence 23578899998884 332 25678999999999998 667654 66 7888 9999999999999866 35566
Q ss_pred cCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceeeCCCcccccceeEEecCCC
Q 047959 324 EELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAY 389 (478)
Q Consensus 324 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~ 389 (478)
..+++|+.|+|++|.+..... . +..+++|+.|++++| .+..++ ...+++|+.|++++|+.
T Consensus 298 ~~l~~L~~L~Ls~N~l~~i~~--~-~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 298 QPIPTLKVLDLSHNHLLHVER--N-QPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp SCCTTCCEEECCSSCCCCCGG--G-HHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSCE
T ss_pred ccCCCCcEEECCCCCCCccCc--c-cccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCCC
Confidence 789999999999998874321 1 567899999999995 566664 67899999999999984
No 36
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=8.8e-24 Score=212.89 Aligned_cols=273 Identities=19% Similarity=0.173 Sum_probs=210.4
Q ss_pred CCCCCeeeec-------CccccCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccch--------------
Q 047959 116 SKSDHLALIH-------CENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPS-------------- 174 (478)
Q Consensus 116 ~~~~~lr~l~-------~~~~~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~-------------- 174 (478)
..+++|+.|+ ....+.++++|++|++++|.++.++. +.++++|++|++++|.+..++.
T Consensus 87 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~ 165 (466)
T 1o6v_A 87 KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN 165 (466)
T ss_dssp TTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEE
T ss_pred hccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCC
Confidence 3456777772 11116788888888888888887765 7888888888888877665542
Q ss_pred ------hhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCC
Q 047959 175 ------LLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRL 248 (478)
Q Consensus 175 ------~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l 248 (478)
.+.++++|++|++++|.+..++. +..+++|++|++++|......| ++.+++|++|++.++.-.....+..+
T Consensus 166 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l 242 (466)
T 1o6v_A 166 QVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASL 242 (466)
T ss_dssp SCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGC
T ss_pred cccCchhhccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccchhhhcC
Confidence 25667788888888888877754 7788889999887776554433 67788899999888872223467888
Q ss_pred CCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCC
Q 047959 249 PNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPH 328 (478)
Q Consensus 249 ~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 328 (478)
++|+.|++++|. ..+..+ +..+++|+.|++++ +.+..+| .+.. +++|+.|++++|.+.+. ..++.+++
T Consensus 243 ~~L~~L~l~~n~--l~~~~~--~~~l~~L~~L~l~~-n~l~~~~----~~~~-l~~L~~L~L~~n~l~~~--~~~~~l~~ 310 (466)
T 1o6v_A 243 TNLTDLDLANNQ--ISNLAP--LSGLTKLTELKLGA-NQISNIS----PLAG-LTALTNLELNENQLEDI--SPISNLKN 310 (466)
T ss_dssp TTCSEEECCSSC--CCCCGG--GTTCTTCSEEECCS-SCCCCCG----GGTT-CTTCSEEECCSSCCSCC--GGGGGCTT
T ss_pred CCCCEEECCCCc--cccchh--hhcCCCCCEEECCC-CccCccc----cccC-CCccCeEEcCCCcccCc--hhhcCCCC
Confidence 999999999884 322222 77889999999997 7777776 4566 89999999999998653 33789999
Q ss_pred CCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceeeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEE
Q 047959 329 LEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLEL 408 (478)
Q Consensus 329 L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l 408 (478)
|+.|++++|.+.+..+ +..+++|+.|++++| .++.++ ....+++|+.|++++|...+..| +..+++|+.|++
T Consensus 311 L~~L~L~~n~l~~~~~----~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 382 (466)
T 1o6v_A 311 LTYLTLYFNNISDISP----VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 382 (466)
T ss_dssp CSEEECCSSCCSCCGG----GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEEC
T ss_pred CCEEECcCCcCCCchh----hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEec
Confidence 9999999998876543 568999999999996 677664 56789999999999997655444 789999999999
Q ss_pred ecCc
Q 047959 409 HWPQ 412 (478)
Q Consensus 409 ~~c~ 412 (478)
++|+
T Consensus 383 ~~n~ 386 (466)
T 1o6v_A 383 NDQA 386 (466)
T ss_dssp CCEE
T ss_pred cCCc
Confidence 9986
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=2.3e-24 Score=207.41 Aligned_cols=263 Identities=18% Similarity=0.195 Sum_probs=211.5
Q ss_pred CCeEeEEEecCCCCCcCC-ccCCCCCCCceEeecCCCCCcc-chhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEe
Q 047959 133 FKHLRVLNLGSAVLDQYP-PGLENLFYLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNF 210 (478)
Q Consensus 133 ~~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 210 (478)
.+.|++|++++|.++.++ ..+.++++|++|++++|.+..+ |..++++++|++|++++|.+..+|..+. ++|++|++
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRI 130 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEEC
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEEC
Confidence 367999999999999664 4699999999999999999966 6789999999999999999999998665 89999999
Q ss_pred eCCCCCCCCCCCCCCCCCCcEeCcccCC-C---CCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecC
Q 047959 211 GSITLPAPPKNNSSPLKNLIFISALHPS-S---CTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEG 286 (478)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~---~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~ 286 (478)
++|.+....+..+..+++|++|++.++. . ..+..+..+ +|+.|+++++. . ..++..+ .++|+.|++++ +
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~--l-~~l~~~~--~~~L~~L~l~~-n 203 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK--L-TGIPKDL--PETLNELHLDH-N 203 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB--C-SSCCSSS--CSSCSCCBCCS-S
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC--C-CccCccc--cCCCCEEECCC-C
Confidence 8887765545568999999999999987 2 456667777 99999999983 2 2244333 27999999998 7
Q ss_pred cccccC-ccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCC
Q 047959 287 KMRQLS-RMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLW 365 (478)
Q Consensus 287 ~l~~~p-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 365 (478)
.++.++ . .+.. +++|+.|++++|.+.+..+..++.+++|++|++++|.+... +. . +..+++|+.|+++++ .
T Consensus 204 ~i~~~~~~---~l~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~-~-l~~l~~L~~L~l~~N-~ 275 (332)
T 2ft3_A 204 KIQAIELE---DLLR-YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV-PA-G-LPDLKLLQVVYLHTN-N 275 (332)
T ss_dssp CCCCCCTT---SSTT-CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBC-CT-T-GGGCTTCCEEECCSS-C
T ss_pred cCCccCHH---HhcC-CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeec-Ch-h-hhcCccCCEEECCCC-C
Confidence 777665 4 6777 99999999999999887777899999999999999988732 22 2 678899999999984 6
Q ss_pred CCceeeCC-------CcccccceeEEecCCCC--CCCccccCCCCCCCEEEEecCc
Q 047959 366 LEEWTMGA-------GAMPKLESLILNPCAYL--RKLPEEQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 366 l~~l~~~~-------~~~~~L~~L~l~~c~~l--~~lp~~l~~l~~L~~L~l~~c~ 412 (478)
++.++... ...+.|+.|++.+|+.. +..|..+..+++|+.++++++.
T Consensus 276 l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 77665432 12578999999999865 4556778899999999998864
No 38
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=5.5e-24 Score=220.04 Aligned_cols=110 Identities=20% Similarity=0.182 Sum_probs=71.2
Q ss_pred ccCCCCeEeEEEecCCCCCcCC-ccCCCCCCCceEeecCCCCCccc-hhhhCCCCCcEEeCCCCcCcccch-hhhccccC
Q 047959 129 FCKKFKHLRVLNLGSAVLDQYP-PGLENLFYLKYLKLNIPSLKCLP-SLLCTLLNLQTLEMPSSYIDHSPE-DIWMMQKL 205 (478)
Q Consensus 129 ~~~~~~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L 205 (478)
.+..+++|++|++++|.++.++ ..++++++|++|++++|.+..+| ..++++++|++|++++|.+..+|. .++++++|
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 126 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccc
Confidence 4566677777777777666443 34666777777777777666554 456667777777777776666654 46666777
Q ss_pred cEEEeeCCCCCC-CCCCCCCCCCCCcEeCcccCC
Q 047959 206 MHLNFGSITLPA-PPKNNSSPLKNLIFISALHPS 238 (478)
Q Consensus 206 ~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~ 238 (478)
++|++++|.+.. .+|..++++++|++|++.++.
T Consensus 127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred cEEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence 777776665544 456666666777777666654
No 39
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.90 E-value=6.1e-24 Score=224.41 Aligned_cols=277 Identities=18% Similarity=0.133 Sum_probs=182.9
Q ss_pred ccccCCCCeEeEEEecCCCCCcC-CccCCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCcccc-hhhhccc
Q 047959 127 ENFCKKFKHLRVLNLGSAVLDQY-PPGLENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDHSP-EDIWMMQ 203 (478)
Q Consensus 127 ~~~~~~~~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~ 203 (478)
...+.++++|++|++++|.++.+ |..++++++|++|++++|.+..+|. .++++++|++|++++|.+..+| ..+++++
T Consensus 42 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 121 (680)
T 1ziw_A 42 AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121 (680)
T ss_dssp GGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCT
T ss_pred HHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccC
Confidence 34467777888888888877744 4457777888888888888777775 4777888888888888777775 4577788
Q ss_pred cCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCC-cccc--CCCCCCcEEEEEecCCcchhhHHHhcc-------
Q 047959 204 KLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCT-PDIL--GRLPNVQTLRISGDLSYYHSGVSKSLC------- 272 (478)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l--~~l~~L~~L~l~~~~~~~~~~l~~~l~------- 272 (478)
+|++|++++|.+....|..+..+++|++|++.++. ... +..+ ..+++|+.|+++++. ..+..+..+.
T Consensus 122 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~ 199 (680)
T 1ziw_A 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ--IKEFSPGCFHAIGRLFG 199 (680)
T ss_dssp TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC--CCCBCTTGGGGSSEECE
T ss_pred CCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc--ccccChhhhhhhhhhhh
Confidence 88888887777666666667778888888877776 222 2222 245677777777663 2111111121
Q ss_pred --------------------CCCCCCEEEEEecCcccc-cCccccccccCC--CCceEEEEEeecCCCCCcCcccCCCCC
Q 047959 273 --------------------QLHKLECLKLVNEGKMRQ-LSRMILSEYKFP--PSLTQLSLSNTELVEDPMPTLEELPHL 329 (478)
Q Consensus 273 --------------------~~~~L~~L~l~~~~~l~~-~p~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~l~~L 329 (478)
..++|+.|++++ +.+.. .|. ++.. + ++|+.|++++|.+.+..+..++.+++|
T Consensus 200 L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~-n~l~~~~~~---~~~~-l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 274 (680)
T 1ziw_A 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSN-SQLSTTSNT---TFLG-LKWTNLTMLDLSYNNLNVVGNDSFAWLPQL 274 (680)
T ss_dssp EECTTCCCHHHHHHHHHHHHTTSCCCEEECTT-SCCCEECTT---TTGG-GGGSCCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhccccccChhhHHHHHHHhhhccccEEEccC-CcccccChh---Hhhc-cCcCCCCEEECCCCCcCccCcccccCcccc
Confidence 125566666665 44443 333 4444 4 348888888888776666777888888
Q ss_pred CeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCC-----ceee----CCCcccccceeEEecCCCCCCCccccCCC
Q 047959 330 EVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLE-----EWTM----GAGAMPKLESLILNPCAYLRKLPEEQWCI 400 (478)
Q Consensus 330 ~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~-----~l~~----~~~~~~~L~~L~l~~c~~l~~lp~~l~~l 400 (478)
++|++++|.+.+..+.. +..+++|+.|++.++..-. .+|. .+..+++|+.|++++|......|..+.++
T Consensus 275 ~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 352 (680)
T 1ziw_A 275 EYFFLEYNNIQHLFSHS--LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL 352 (680)
T ss_dssp CEEECCSCCBSEECTTT--TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTC
T ss_pred cEeeCCCCccCccChhh--hcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccc
Confidence 88888887776543222 5677888888887532111 2222 34567888888888876555555667777
Q ss_pred CCCCEEEEecCc
Q 047959 401 KSLCKLELHWPQ 412 (478)
Q Consensus 401 ~~L~~L~l~~c~ 412 (478)
++|+.|++++|.
T Consensus 353 ~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 353 INLKYLSLSNSF 364 (680)
T ss_dssp TTCCEEECTTCB
T ss_pred cCCcEEECCCCc
Confidence 888888877653
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=1.2e-23 Score=216.97 Aligned_cols=122 Identities=16% Similarity=0.183 Sum_probs=101.8
Q ss_pred CeEeEEEecCCCCCcCC-ccCCCCCCCceEeecCCCCCcc-chhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEee
Q 047959 134 KHLRVLNLGSAVLDQYP-PGLENLFYLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFG 211 (478)
Q Consensus 134 ~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 211 (478)
++|++|++++|.++.++ ..+.++++|++|++++|.++.+ |..+.++++|++|++++|.+..+|.. .+++|++|+++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLS 129 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECC
Confidence 78999999999999777 4699999999999999999976 66799999999999999999999986 89999999998
Q ss_pred CCCCCC-CCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCC--cEEEEEec
Q 047959 212 SITLPA-PPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNV--QTLRISGD 259 (478)
Q Consensus 212 ~~~~~~-~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L--~~L~l~~~ 259 (478)
+|.+.. ..|..++++++|++|++.++. .. ..+..+++| +.|+++++
T Consensus 130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp SSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEES
T ss_pred CCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecc
Confidence 888765 456789999999999999886 21 123333334 66666665
No 41
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=1.9e-23 Score=202.72 Aligned_cols=264 Identities=19% Similarity=0.197 Sum_probs=130.7
Q ss_pred EEecCCCCCcCCccCCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCcccc-hhhhccccCcEEEeeCCCCC
Q 047959 139 LNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDHSP-EDIWMMQKLMHLNFGSITLP 216 (478)
Q Consensus 139 L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~ 216 (478)
.+.+++.++.+|..+. ++|++|++++|.++.+|. .+.++++|++|++++|.+..++ ..+.++++|++|++++|.+.
T Consensus 36 c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp EECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred eeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 3444444444444332 244444444444444333 3444444444444444444432 23444444444444444333
Q ss_pred CCCCCCCCCCCCCcEeCcccCC-CCCcc--ccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccccc-C
Q 047959 217 APPKNNSSPLKNLIFISALHPS-SCTPD--ILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQL-S 292 (478)
Q Consensus 217 ~~~~~~~~~l~~L~~L~l~~~~-~~~~~--~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~-p 292 (478)
...+..+..+++|++|++.++. ...+. .+.++++|+.|++++|. ......+..+..+++|+.|++++ +.++.+ |
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~ 191 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD-TFTKIQRKDFAGLTFLEELEIDA-SDLQSYEP 191 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS-SCCEECTTTTTTCCEEEEEEEEE-TTCCEECT
T ss_pred cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc-cccccCHHHccCCCCCCEEECCC-CCcCccCH
Confidence 2111113444444444444444 22222 34555555555555541 11112233445555666666655 444433 4
Q ss_pred ccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEe-CCCCCcccceeEEecCCCCC----
Q 047959 293 RMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACV-GCSSFPQLKILHLKSMLWLE---- 367 (478)
Q Consensus 293 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~l~---- 367 (478)
. .+.. +++|++|++++|.+.......+..+++|+.|++++|.+.+..+... .....+.++.+++.++ .+.
T Consensus 192 ~---~l~~-l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~~l 266 (353)
T 2z80_A 192 K---SLKS-IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV-KITDESL 266 (353)
T ss_dssp T---TTTT-CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC-BCCHHHH
T ss_pred H---HHhc-cccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccc-cccCcch
Confidence 4 5555 6666666666665533222223345666666666665554321110 0223455666666654 232
Q ss_pred -ceeeCCCcccccceeEEecCCCCCCCcccc-CCCCCCCEEEEecCc
Q 047959 368 -EWTMGAGAMPKLESLILNPCAYLRKLPEEQ-WCIKSLCKLELHWPQ 412 (478)
Q Consensus 368 -~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c~ 412 (478)
.+|.....+++|+.|++++|. ++.+|..+ ..+++|+.|++++|+
T Consensus 267 ~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 267 FQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHHHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhhHHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCC
Confidence 344445677888888888875 45677654 788888888888875
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=5.3e-23 Score=205.96 Aligned_cols=252 Identities=19% Similarity=0.112 Sum_probs=122.7
Q ss_pred CCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEe
Q 047959 131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNF 210 (478)
Q Consensus 131 ~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 210 (478)
..+++|++|++++|.++.+| ++.+++|++|++++|.++.+| ++.+++|++|++++|.+..+| ++.+++|++|++
T Consensus 61 ~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l 134 (457)
T 3bz5_A 61 EKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNC 134 (457)
T ss_dssp GGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred cccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEEC
Confidence 44555556666665555543 555555666666555555543 555555555555555555554 455555555555
Q ss_pred eCCCCCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcc
Q 047959 211 GSITLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKM 288 (478)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l 288 (478)
++|.+.. + .++.+++|++|++..+. ... .++.+++|+.|+++++. ..+ ++ +..+++|+.|++++ +.+
T Consensus 135 ~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~--l~~-l~--l~~l~~L~~L~l~~-N~l 203 (457)
T 3bz5_A 135 ARNTLTE-I--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK--ITE-LD--VSQNKLLNRLNCDT-NNI 203 (457)
T ss_dssp TTSCCSC-C--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC--CCC-CC--CTTCTTCCEEECCS-SCC
T ss_pred CCCccce-e--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc--cce-ec--cccCCCCCEEECcC-CcC
Confidence 5544433 2 14445555555555543 111 24444555555555442 111 11 34444444444443 333
Q ss_pred cccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCcee------------------------
Q 047959 289 RQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKL------------------------ 344 (478)
Q Consensus 289 ~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~------------------------ 344 (478)
+.++ ++. +++|+.|++++|.+++. + ++.+++|+.|++++|.+.+..+
T Consensus 204 ~~~~-----l~~-l~~L~~L~Ls~N~l~~i--p-~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n 274 (457)
T 3bz5_A 204 TKLD-----LNQ-NIQLTFLDCSSNKLTEI--D-VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHN 274 (457)
T ss_dssp SCCC-----CTT-CTTCSEEECCSSCCSCC--C-CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTC
T ss_pred Ceec-----ccc-CCCCCEEECcCCccccc--C-ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCC
Confidence 3331 223 44444444444444331 1 3344444444444444333210
Q ss_pred ----EEeCCCCCcccceeEEecCCCCCceeeC--------CCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959 345 ----ACVGCSSFPQLKILHLKSMLWLEEWTMG--------AGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 345 ----~~~~~~~~~~L~~L~L~~~~~l~~l~~~--------~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 412 (478)
... .+.+++|+.|++++|..+..+|.. ...+++|+.|++++|.. +.++ +.++++|+.|+++++.
T Consensus 275 ~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l-~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 275 TQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTEL-TELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp TTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCC-SCCC--CTTCTTCSEEECCSSC
T ss_pred ccCCccc-ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcc-cccc--cccCCcCcEEECCCCC
Confidence 011 344566666666666555444421 23445666666665542 3342 6667777777777654
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=7.6e-24 Score=203.01 Aligned_cols=202 Identities=17% Similarity=0.216 Sum_probs=163.7
Q ss_pred cCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCC-cCcccchhhhc-------
Q 047959 130 CKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSS-YIDHSPEDIWM------- 201 (478)
Q Consensus 130 ~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~-~l~~lp~~i~~------- 201 (478)
+.++++|++|++++|.++.+|..++++++|++|++++|.+..+|..++++++|++|++++| .+..+|..+..
T Consensus 100 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~ 179 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179 (328)
T ss_dssp GGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred hhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence 3558999999999999999999999999999999999999999999999999999999998 77888887664
Q ss_pred --cccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCC
Q 047959 202 --MQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLE 278 (478)
Q Consensus 202 --l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~ 278 (478)
+++|++|++++|.+. .+|..++.+++|++|++.+|. ...+..++.+++|+.|++++| ...+.++..+..+++|+
T Consensus 180 ~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n--~~~~~~p~~~~~l~~L~ 256 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC--TALRNYPPIFGGRAPLK 256 (328)
T ss_dssp EESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTC--TTCCBCCCCTTCCCCCC
T ss_pred ccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCC--cchhhhHHHhcCCCCCC
Confidence 889999999887766 777778888888888888877 666667777888888888877 45555666677777777
Q ss_pred EEEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCc
Q 047959 279 CLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNS 338 (478)
Q Consensus 279 ~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 338 (478)
.|++++|.....+|. .+.. +++|+.|++++|.+.+..+..++++++|+.+++..+.
T Consensus 257 ~L~L~~n~~~~~~p~---~~~~-l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 257 RLILKDCSNLLTLPL---DIHR-LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp EEECTTCTTCCBCCT---TGGG-CTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred EEECCCCCchhhcch---hhhc-CCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 777777666667776 6777 7777777777777777777777777777777776443
No 44
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=1.7e-22 Score=202.28 Aligned_cols=234 Identities=18% Similarity=0.110 Sum_probs=153.4
Q ss_pred cCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEE
Q 047959 130 CKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLN 209 (478)
Q Consensus 130 ~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 209 (478)
+..+++|++|++++|.++.++ ++++++|++|++++|.++.+| ++.+++|++|++++|.+..++ ++.+++|++|+
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~ 154 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELD 154 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEE
T ss_pred cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEE
Confidence 467778888888888877664 777888888888888877765 777788888888888777764 66777777777
Q ss_pred eeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcc
Q 047959 210 FGSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKM 288 (478)
Q Consensus 210 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l 288 (478)
+++|.....+ .+..+++|+.|++.++. ...+ ++.+++|+.|++++|. .... .+..+++|+.|++++ +.+
T Consensus 155 l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~--l~~~---~l~~l~~L~~L~Ls~-N~l 224 (457)
T 3bz5_A 155 CHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNN--ITKL---DLNQNIQLTFLDCSS-NKL 224 (457)
T ss_dssp CTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSC--CSCC---CCTTCTTCSEEECCS-SCC
T ss_pred CCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCc--CCee---ccccCCCCCEEECcC-Ccc
Confidence 7666444443 35666777777777666 3333 5666666666666663 2111 255666666666665 555
Q ss_pred cccCccccccccCCCCceEEEEEeecCCCCCcCc-----------------------------ccCCCCCCeEEEeeCcc
Q 047959 289 RQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPT-----------------------------LEELPHLEVLKLKQNSY 339 (478)
Q Consensus 289 ~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-----------------------------l~~l~~L~~L~L~~~~~ 339 (478)
+.+| +.. +++|+.|++++|.+++..+.. .+.+++|+.|++++|..
T Consensus 225 ~~ip-----~~~-l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~ 298 (457)
T 3bz5_A 225 TEID-----VTP-LTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQ 298 (457)
T ss_dssp SCCC-----CTT-CTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTT
T ss_pred cccC-----ccc-cCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcc
Confidence 5554 233 556666666666554433222 23456777777777665
Q ss_pred cCceeE-------EeCCCCCcccceeEEecCCCCCceeeCCCcccccceeEEecCCC
Q 047959 340 LERKLA-------CVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAY 389 (478)
Q Consensus 340 ~~~~~~-------~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~ 389 (478)
.+..+. .. +..+++|+.|++++ +.++.++ .+.+++|+.|++++|..
T Consensus 299 l~~l~~~~~~L~~L~-l~~~~~L~~L~L~~-N~l~~l~--l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 299 LYLLDCQAAGITELD-LSQNPKLVYLYLNN-TELTELD--VSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp CCEEECTTCCCSCCC-CTTCTTCCEEECTT-CCCSCCC--CTTCTTCSEEECCSSCC
T ss_pred cceeccCCCcceEec-hhhcccCCEEECCC-Ccccccc--cccCCcCcEEECCCCCC
Confidence 443321 01 45667888888887 4677663 78899999999999864
No 45
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=3.5e-23 Score=216.62 Aligned_cols=111 Identities=20% Similarity=0.160 Sum_probs=71.3
Q ss_pred cccCCCCeEeEEEecCCCCCcCCc-cCCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCcccchh-hhcccc
Q 047959 128 NFCKKFKHLRVLNLGSAVLDQYPP-GLENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDHSPED-IWMMQK 204 (478)
Q Consensus 128 ~~~~~~~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~ 204 (478)
..|.++++|++|+|++|.++.+|+ .|.++++|++|+|++|+++.+|. .+.++++|++|++++|.+..+|.. ++++++
T Consensus 70 ~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~ 149 (635)
T 4g8a_A 70 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 149 (635)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcc
Confidence 445666677777777777665544 36667777777777777666654 356667777777777766666543 566677
Q ss_pred CcEEEeeCCCCCC-CCCCCCCCCCCCcEeCcccCC
Q 047959 205 LMHLNFGSITLPA-PPKNNSSPLKNLIFISALHPS 238 (478)
Q Consensus 205 L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~ 238 (478)
|++|++++|.+.. ..|..++.+++|++|++.++.
T Consensus 150 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred cCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 7777776665533 445556666677777666665
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=4.1e-23 Score=200.38 Aligned_cols=250 Identities=16% Similarity=0.160 Sum_probs=204.0
Q ss_pred CeEeEEEecCCCCCcCCc-cCCCCCCCceEeecCCCCCccc-hhhhCCCCCcEEeCCCCcCcccchh-hhccccCcEEEe
Q 047959 134 KHLRVLNLGSAVLDQYPP-GLENLFYLKYLKLNIPSLKCLP-SLLCTLLNLQTLEMPSSYIDHSPED-IWMMQKLMHLNF 210 (478)
Q Consensus 134 ~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 210 (478)
++|++|++++|.++.+|. .+.++++|++|++++|.+..++ ..++++++|++|++++|.+..+|.. +.++++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 579999999999997776 6999999999999999999764 5699999999999999999999876 789999999999
Q ss_pred eCCCCCCCCCC--CCCCCCCCcEeCcccCC--C-CCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEec
Q 047959 211 GSITLPAPPKN--NSSPLKNLIFISALHPS--S-CTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNE 285 (478)
Q Consensus 211 ~~~~~~~~~~~--~~~~l~~L~~L~l~~~~--~-~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~ 285 (478)
++|.+. .+|. .+..+++|++|++.++. . ..+..++++++|++|++++| ...+..+..+..+++|++|++++
T Consensus 132 ~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~l~~l~~L~~L~l~~- 207 (353)
T 2z80_A 132 LGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS--DLQSYEPKSLKSIQNVSHLILHM- 207 (353)
T ss_dssp TTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET--TCCEECTTTTTTCSEEEEEEEEC-
T ss_pred CCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC--CcCccCHHHHhccccCCeecCCC-
Confidence 887665 4554 68899999999999984 3 33567899999999999998 45555677889999999999998
Q ss_pred CcccccCccccccccCCCCceEEEEEeecCCCCCcCcc---cCCCCCCeEEEeeCcccCcee---EEeCCCCCcccceeE
Q 047959 286 GKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTL---EELPHLEVLKLKQNSYLERKL---ACVGCSSFPQLKILH 359 (478)
Q Consensus 286 ~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~L~~~~~~~~~~---~~~~~~~~~~L~~L~ 359 (478)
+.++.+|.. .+.. +++|+.|++++|.+++..+..+ ...+.++.++++++.+.+... ... +..+++|++|+
T Consensus 208 n~l~~~~~~--~~~~-~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~-l~~l~~L~~L~ 283 (353)
T 2z80_A 208 KQHILLLEI--FVDV-TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL-LNQISGLLELE 283 (353)
T ss_dssp SCSTTHHHH--HHHH-TTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHH-HHTCTTCCEEE
T ss_pred Cccccchhh--hhhh-cccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHH-HhcccCCCEEE
Confidence 777877761 2345 8999999999999877554433 346788999999887765321 111 46789999999
Q ss_pred EecCCCCCceeeCC-CcccccceeEEecCCCCCC
Q 047959 360 LKSMLWLEEWTMGA-GAMPKLESLILNPCAYLRK 392 (478)
Q Consensus 360 L~~~~~l~~l~~~~-~~~~~L~~L~l~~c~~l~~ 392 (478)
++++ .++.+|... +.+++|+.|++++|+....
T Consensus 284 Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 284 FSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCC-CCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 9995 788888775 7899999999999975543
No 47
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=3e-23 Score=197.20 Aligned_cols=192 Identities=21% Similarity=0.236 Sum_probs=89.9
Q ss_pred EEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchh-hhCCCCCcEEeCCCCcCccc---chhhhccccCcEEEeeCC
Q 047959 138 VLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSL-LCTLLNLQTLEMPSSYIDHS---PEDIWMMQKLMHLNFGSI 213 (478)
Q Consensus 138 ~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~l---p~~i~~l~~L~~L~l~~~ 213 (478)
.++.+++.++.+|..+. ++|++|++++|.++.+|.. +.++++|++|++++|.+..+ |..+..+++|++|++++|
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 34555555555554332 3555555555555555543 34555555555555554433 344445555555555444
Q ss_pred CCCCCCCCCCCCCCCCcEeCcccCC-CCCc--cccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccc
Q 047959 214 TLPAPPKNNSSPLKNLIFISALHPS-SCTP--DILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQ 290 (478)
Q Consensus 214 ~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~--~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~ 290 (478)
.+. .+|..+..+++|++|++.++. ...+ ..+..+++|+.|+++++ ......+..+..+++|+.|++++ +.+..
T Consensus 89 ~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~-n~l~~ 164 (306)
T 2z66_A 89 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT--HTRVAFNGIFNGLSSLEVLKMAG-NSFQE 164 (306)
T ss_dssp SEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS--CCEECSTTTTTTCTTCCEEECTT-CEEGG
T ss_pred ccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC--cCCccchhhcccCcCCCEEECCC-Ccccc
Confidence 322 233334444444444444443 1111 23444455555555544 22222333344444555555544 33332
Q ss_pred --cCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcc
Q 047959 291 --LSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSY 339 (478)
Q Consensus 291 --~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 339 (478)
+|. .+.. +++|+.|++++|.+++..+..+..+++|++|++++|.+
T Consensus 165 ~~~~~---~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 211 (306)
T 2z66_A 165 NFLPD---IFTE-LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211 (306)
T ss_dssp GEECS---CCTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred ccchh---HHhh-CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCcc
Confidence 444 4444 55555555555554444344444455555555554443
No 48
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=1.2e-22 Score=214.62 Aligned_cols=271 Identities=22% Similarity=0.230 Sum_probs=213.0
Q ss_pred CeEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCCcc-chhhhCCCCCcEEeCCCCcCcccch-hhhccccCcEEEe
Q 047959 134 KHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSYIDHSPE-DIWMMQKLMHLNF 210 (478)
Q Consensus 134 ~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l 210 (478)
+++++|++++|.++.+|.. ++++++|++|++++|.+..+ |..++++++|++|++++|.+..+|. .++++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 6799999999999977764 99999999999999999955 6778999999999999999999987 5899999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEecCCcchhhHHHhc--cCCCCCCEEEEEecC
Q 047959 211 GSITLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSL--CQLHKLECLKLVNEG 286 (478)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l--~~~~~L~~L~l~~~~ 286 (478)
++|.+....|..++++++|++|++.++. ...+..++++++|++|+++++. ..+..+..+ ..+++|+.|++++ +
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~~~~~~L~~L~L~~-n 181 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK--IQALKSEELDIFANSSLKKLELSS-N 181 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC--CCCBCHHHHGGGTTCEESEEECTT-C
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc--ccccCHHHhhccccccccEEECCC-C
Confidence 8888776666789999999999999998 5556678899999999999984 333333333 3568999999997 6
Q ss_pred cccccCcccccccc--------------------------CCCCceEEEEEeecCCCCCcCcccCCCC--CCeEEEeeCc
Q 047959 287 KMRQLSRMILSEYK--------------------------FPPSLTQLSLSNTELVEDPMPTLEELPH--LEVLKLKQNS 338 (478)
Q Consensus 287 ~l~~~p~~~~~~~~--------------------------~~~~L~~L~l~~~~~~~~~~~~l~~l~~--L~~L~L~~~~ 338 (478)
.++.++.. .+.. ..++|+.|++++|.+.+..+..+..++. |+.|++++|.
T Consensus 182 ~l~~~~~~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~ 259 (680)
T 1ziw_A 182 QIKEFSPG--CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259 (680)
T ss_dssp CCCCBCTT--GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC
T ss_pred cccccChh--hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC
Confidence 66654431 2322 0256788888888877766777777654 9999999888
Q ss_pred ccCceeEEeCCCCCcccceeEEecCCCCCc-eeeCCCcccccceeEEecCCCCC-----CCcc----ccCCCCCCCEEEE
Q 047959 339 YLERKLACVGCSSFPQLKILHLKSMLWLEE-WTMGAGAMPKLESLILNPCAYLR-----KLPE----EQWCIKSLCKLEL 408 (478)
Q Consensus 339 ~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~-l~~~~~~~~~L~~L~l~~c~~l~-----~lp~----~l~~l~~L~~L~l 408 (478)
+.+..+.. +..+++|++|+++++ .+.. .+..+..+++|+.|++++|.... .+|. .+..+++|+.|++
T Consensus 260 l~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l 336 (680)
T 1ziw_A 260 LNVVGNDS--FAWLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336 (680)
T ss_dssp CCEECTTT--TTTCTTCCEEECCSC-CBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEEC
T ss_pred cCccCccc--ccCcccccEeeCCCC-ccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEEC
Confidence 76543322 678899999999985 4554 34567889999999998765332 3443 5678999999999
Q ss_pred ecCc
Q 047959 409 HWPQ 412 (478)
Q Consensus 409 ~~c~ 412 (478)
++|.
T Consensus 337 ~~n~ 340 (680)
T 1ziw_A 337 EDND 340 (680)
T ss_dssp CSCC
T ss_pred CCCc
Confidence 9875
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=5.7e-23 Score=195.26 Aligned_cols=221 Identities=22% Similarity=0.290 Sum_probs=186.7
Q ss_pred CeEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCCcc---chhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEE
Q 047959 134 KHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCL---PSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLN 209 (478)
Q Consensus 134 ~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~~l---p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 209 (478)
++|++|++++|.++.+|.. +.++++|++|++++|.+..+ |..+..+++|++|++++|.+..+|..+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 5799999999999988876 78999999999999998855 6788889999999999999999998899999999999
Q ss_pred eeCCCCCCCCC-CCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEecCCcchh-hHHHhccCCCCCCEEEEEec
Q 047959 210 FGSITLPAPPK-NNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHS-GVSKSLCQLHKLECLKLVNE 285 (478)
Q Consensus 210 l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~-~l~~~l~~~~~L~~L~l~~~ 285 (478)
+++|.+....+ ..+..+++|++|++.++. ...+..+..+++|++|+++++ ...+ ..+..+..+++|+.|++++
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~~l~~L~~L~Ls~- 184 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN--SFQENFLPDIFTELRNLTFLDLSQ- 184 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC--EEGGGEECSCCTTCTTCCEEECTT-
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC--ccccccchhHHhhCcCCCEEECCC-
Confidence 98876654433 578899999999999988 556667899999999999998 4443 4677889999999999998
Q ss_pred Cccccc-CccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCc-ccceeEEecC
Q 047959 286 GKMRQL-SRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFP-QLKILHLKSM 363 (478)
Q Consensus 286 ~~l~~~-p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~-~L~~L~L~~~ 363 (478)
+.++.+ |. .+.. +++|+.|++++|.+++.....+..+++|+.|++++|.+.+..+.. +..++ +|+.|+++++
T Consensus 185 n~l~~~~~~---~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 185 CQLEQLSPT---AFNS-LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE--LQHFPSSLAFLNLTQN 258 (306)
T ss_dssp SCCCEECTT---TTTT-CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS--CCCCCTTCCEEECTTC
T ss_pred CCcCCcCHH---HhcC-CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH--HHhhhccCCEEEccCC
Confidence 777766 55 7788 999999999999988776667888999999999999887655433 45553 7888888774
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=3e-23 Score=195.10 Aligned_cols=217 Identities=16% Similarity=0.123 Sum_probs=116.3
Q ss_pred eEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccc-hhhhCCCCCcEEeCCCCcCccc-chhhhccccCcEEEeeCCC
Q 047959 137 RVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLP-SLLCTLLNLQTLEMPSSYIDHS-PEDIWMMQKLMHLNFGSIT 214 (478)
Q Consensus 137 ~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~ 214 (478)
++++.+++.++.+|..+ .++|++|++++|.+..+| ..+..+++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 34555555555555433 235666666666655444 2355556666666666655554 4445556666666665554
Q ss_pred -CCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccccc
Q 047959 215 -LPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQL 291 (478)
Q Consensus 215 -~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~ 291 (478)
.....|..+..+++|++|++.++. ...+..+.++++|++|+++++ ......+..+..+++|+.|++++ +.++.+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~ 168 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN--ALQALPDDTFRDLGNLTHLFLHG-NRISSV 168 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCS-SCCCEE
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC--cccccCHhHhccCCCccEEECCC-Cccccc
Confidence 333334455555666666655555 222344555666666666655 22222223345556666666665 455555
Q ss_pred CccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecC
Q 047959 292 SRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSM 363 (478)
Q Consensus 292 p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 363 (478)
|.. .+.. +++|+.|++++|.+++..+..++.+++|+.|++++|.+.+..... +..+++|+.|+++++
T Consensus 169 ~~~--~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 169 PER--AFRG-LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA--LAPLRALQYLRLNDN 235 (285)
T ss_dssp CTT--TTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHH--HTTCTTCCEEECCSS
T ss_pred CHH--HhcC-ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHH--cccCcccCEEeccCC
Confidence 431 2444 566666666666655555555666666666666666555433221 345566666666653
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=3.7e-22 Score=199.53 Aligned_cols=102 Identities=20% Similarity=0.246 Sum_probs=48.3
Q ss_pred eEeEEEecCCCCCcCC-ccCCCCCCCceEeecCCCCCccc-hhhhCCCCCcEEeCCCCcCcccch-hhhccccCcEEEee
Q 047959 135 HLRVLNLGSAVLDQYP-PGLENLFYLKYLKLNIPSLKCLP-SLLCTLLNLQTLEMPSSYIDHSPE-DIWMMQKLMHLNFG 211 (478)
Q Consensus 135 ~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~ 211 (478)
+++.|+|++|.++.++ ..+.++++|++|++++|.+..++ ..+.++++|++|++++|.+..+|. .+..+++|++|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 3445555555554332 33455555555555555555333 334455555555555555554443 24445555555554
Q ss_pred CCCCCCCCCCCCCCCCCCcEeCccc
Q 047959 212 SITLPAPPKNNSSPLKNLIFISALH 236 (478)
Q Consensus 212 ~~~~~~~~~~~~~~l~~L~~L~l~~ 236 (478)
+|.+....+..+..+++|++|++.+
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGE 169 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCC
T ss_pred CCcccccCHHHhhhCcccCEeCCCC
Confidence 4443332233344444444444444
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=4.7e-22 Score=199.49 Aligned_cols=217 Identities=19% Similarity=0.197 Sum_probs=102.1
Q ss_pred eEeEEEecCCCCCcC-CccCCCCCCCceEeecCCCCCccc-hhhhCCCCCcEEeCCCCcCcccchh-hhccccCcEEEee
Q 047959 135 HLRVLNLGSAVLDQY-PPGLENLFYLKYLKLNIPSLKCLP-SLLCTLLNLQTLEMPSSYIDHSPED-IWMMQKLMHLNFG 211 (478)
Q Consensus 135 ~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~ 211 (478)
++++|+|++|.++.+ |..+.++++|++|++++|.+..++ ..+.++++|++|++++|.+..+|.. +..+++|++|+++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 455556666555533 334555556666666655555433 3455555666666665555555433 4455556666655
Q ss_pred CCCCCCCCCCCCCCCCCCcEeCcccCC--CCCc-cccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcc
Q 047959 212 SITLPAPPKNNSSPLKNLIFISALHPS--SCTP-DILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKM 288 (478)
Q Consensus 212 ~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l 288 (478)
+|.+....+..+..+++|+.|++.++. ...+ ..+.++++|+.|++++|. .. .+ ..+..+++|+.|++++ +.+
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~--l~-~~-~~~~~l~~L~~L~Ls~-N~l 230 (452)
T 3zyi_A 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN--IK-DM-PNLTPLVGLEELEMSG-NHF 230 (452)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC--CS-SC-CCCTTCTTCCEEECTT-SCC
T ss_pred CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc--cc-cc-ccccccccccEEECcC-CcC
Confidence 554443333345555555555555433 1111 224445555555555442 11 11 1234444455555544 333
Q ss_pred ccc-CccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEec
Q 047959 289 RQL-SRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKS 362 (478)
Q Consensus 289 ~~~-p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 362 (478)
+.+ |. .+.. +++|+.|++++|.++...+..+..+++|+.|+|++|.+....... +..+++|+.|+|++
T Consensus 231 ~~~~~~---~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 231 PEIRPG---SFHG-LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL--FTPLRYLVELHLHH 299 (452)
T ss_dssp SEECGG---GGTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS--STTCTTCCEEECCS
T ss_pred cccCcc---cccC-ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH--hccccCCCEEEccC
Confidence 333 22 3444 445555555554444444444444445555555444443222111 33344444444444
No 53
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.87 E-value=1.9e-21 Score=194.44 Aligned_cols=245 Identities=23% Similarity=0.268 Sum_probs=132.9
Q ss_pred CeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCC
Q 047959 134 KHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSI 213 (478)
Q Consensus 134 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~ 213 (478)
++|++|++++|.++.+| .++++++|++|++++|.++.+|..+ .+|++|++++|.+..+| .++++++|++|++++|
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCC
Confidence 56777777777777666 4777777777777777777666433 46777777777776666 4677777777777666
Q ss_pred CCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccC
Q 047959 214 TLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLS 292 (478)
Q Consensus 214 ~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p 292 (478)
.+.. +|... ++|++|++.++. ...+ .++.+++|+.|++++|. .. .++. .+++|+.|++++ +.++.+|
T Consensus 206 ~l~~-l~~~~---~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~--l~-~l~~---~~~~L~~L~l~~-N~l~~l~ 273 (454)
T 1jl5_A 206 SLKK-LPDLP---LSLESIVAGNNILEELP-ELQNLPFLTTIYADNNL--LK-TLPD---LPPSLEALNVRD-NYLTDLP 273 (454)
T ss_dssp CCSS-CCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC--CS-SCCS---CCTTCCEEECCS-SCCSCCC
T ss_pred cCCc-CCCCc---CcccEEECcCCcCCccc-ccCCCCCCCEEECCCCc--CC-cccc---cccccCEEECCC-CcccccC
Confidence 5442 33322 467777777766 4444 46777777777777763 11 1221 235677777765 5565555
Q ss_pred ccccccccCCCCceEEEEEeecCCC--CCcCc-------------ccCC-CCCCeEEEeeCcccCceeEEeCCCCCcccc
Q 047959 293 RMILSEYKFPPSLTQLSLSNTELVE--DPMPT-------------LEEL-PHLEVLKLKQNSYLERKLACVGCSSFPQLK 356 (478)
Q Consensus 293 ~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~-------------l~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~ 356 (478)
. . +++|+.|++++|.+++ ..++. +..+ ++|++|++++|.+.+. ...+++|+
T Consensus 274 ~---~----~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~l------p~~~~~L~ 340 (454)
T 1jl5_A 274 E---L----PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIEL------PALPPRLE 340 (454)
T ss_dssp C---C----CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCC------CCCCTTCC
T ss_pred c---c----cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccccc------cccCCcCC
Confidence 4 1 3556666666665543 11110 1112 2455555555544431 11245566
Q ss_pred eeEEecCCCCCceeeCCCcccccceeEEecCCCCC--CCccccCCC-------------CCCCEEEEecCc
Q 047959 357 ILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLR--KLPEEQWCI-------------KSLCKLELHWPQ 412 (478)
Q Consensus 357 ~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~--~lp~~l~~l-------------~~L~~L~l~~c~ 412 (478)
+|+++++ .++.+|. .+++|+.|++++|.... .+|..+..+ ++|+.|++++++
T Consensus 341 ~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 341 RLIASFN-HLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp EEECCSS-CCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred EEECCCC-ccccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 6666553 4455544 35566666666665444 455555444 556666666554
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=1.3e-21 Score=196.25 Aligned_cols=241 Identities=17% Similarity=0.153 Sum_probs=140.3
Q ss_pred EeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCcc-chhhhCCCCCcEEeCCCCcCcccc-hhhhccccCcEEEeeCC
Q 047959 136 LRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSYIDHSP-EDIWMMQKLMHLNFGSI 213 (478)
Q Consensus 136 L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~ 213 (478)
.+.++.++..++.+|..+. +++++|++++|.+..+ |..+.++++|++|++++|.+..++ ..+.++++|++|++++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 4567788888888887654 5889999999888865 566888889999999998887775 56778888899988777
Q ss_pred CCCCCCCCCCCCCCCCcEeCcccCC-CCC-ccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccccc
Q 047959 214 TLPAPPKNNSSPLKNLIFISALHPS-SCT-PDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQL 291 (478)
Q Consensus 214 ~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~ 291 (478)
.+....+..+..+++|++|++.++. ... ...+.++++|+.|+++++ +.++.+
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~--------------------------~~l~~i 187 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL--------------------------KKLEYI 187 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC--------------------------TTCCEE
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCC--------------------------CCcccc
Confidence 6664444557777777777777765 222 224555666666666554 333333
Q ss_pred CccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCce-e
Q 047959 292 SRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEW-T 370 (478)
Q Consensus 292 p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l-~ 370 (478)
|.. .+.. +++|+.|++++|.+++. +.+..+++|+.|+|++|.+.+..+.. +..+++|+.|+++++ .++.+ +
T Consensus 188 ~~~--~~~~-l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~ 259 (452)
T 3zyi_A 188 SEG--AFEG-LFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGS--FHGLSSLKKLWVMNS-QVSLIER 259 (452)
T ss_dssp CTT--TTTT-CTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSEECGGG--GTTCTTCCEEECTTS-CCCEECT
T ss_pred Chh--hccC-CCCCCEEECCCCccccc--ccccccccccEEECcCCcCcccCccc--ccCccCCCEEEeCCC-cCceECH
Confidence 320 2333 44444444444444321 23444445555555544443322211 344455555555542 33322 2
Q ss_pred eCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959 371 MGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 371 ~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 412 (478)
..+..+++|+.|++++|......+..+..+++|+.|+++++|
T Consensus 260 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 260 NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred HHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 223445556666665553322222334556666666666543
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=6e-21 Score=196.87 Aligned_cols=234 Identities=20% Similarity=0.153 Sum_probs=187.2
Q ss_pred CeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCC
Q 047959 134 KHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSI 213 (478)
Q Consensus 134 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~ 213 (478)
++|++|++++|.++.+|. .+++|++|++++|.++.+|. .+++|++|++++|.+..+|. .+++|++|++++|
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N 131 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGN 131 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSS
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCC
Confidence 678899999999888887 56789999999999888886 67889999999998888887 6788999999777
Q ss_pred CCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccC
Q 047959 214 TLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLS 292 (478)
Q Consensus 214 ~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p 292 (478)
.+. .+|.. +++|++|++.+|. ..++. .+++|+.|++++|. . ..++ ..+++|+.|++++ +.++.+|
T Consensus 132 ~l~-~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~--l-~~l~---~~~~~L~~L~Ls~-N~l~~l~ 197 (622)
T 3g06_A 132 QLT-SLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQ--L-TSLP---MLPSGLQELSVSD-NQLASLP 197 (622)
T ss_dssp CCS-CCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC--C-SCCC---CCCTTCCEEECCS-SCCSCCC
T ss_pred CCC-cCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCC--C-CCCc---ccCCCCcEEECCC-CCCCCCC
Confidence 554 45543 4788999988887 44443 35778889998873 2 2233 4578999999997 8888887
Q ss_pred ccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceeeC
Q 047959 293 RMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMG 372 (478)
Q Consensus 293 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~ 372 (478)
. . +++|+.|++++|.++... ..+++|+.|++++|.+++.. ..+++|+.|+++++ .++.+|.
T Consensus 198 ~------~-~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L~~lp------~~l~~L~~L~Ls~N-~L~~lp~- 258 (622)
T 3g06_A 198 T------L-PSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLP------VLPSELKELMVSGN-RLTSLPM- 258 (622)
T ss_dssp C------C-CTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCCC------CCCTTCCEEECCSS-CCSCCCC-
T ss_pred C------c-cchhhEEECcCCcccccC----CCCCCCCEEEccCCccCcCC------CCCCcCcEEECCCC-CCCcCCc-
Confidence 5 2 678999999999876422 23589999999999887632 45789999999995 7888876
Q ss_pred CCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959 373 AGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 373 ~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 412 (478)
.+++|+.|++++|. ++.+|..+.++++|+.|++++|+
T Consensus 259 --~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 259 --LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp --CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCC
T ss_pred --ccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCC
Confidence 67999999999985 56889999999999999999987
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.86 E-value=4.1e-22 Score=187.29 Aligned_cols=202 Identities=19% Similarity=0.226 Sum_probs=173.8
Q ss_pred CCeEeEEEecCCCCCcCCc-cCCCCCCCceEeecCCCCCcc-chhhhCCCCCcEEeCCCCc-Cccc-chhhhccccCcEE
Q 047959 133 FKHLRVLNLGSAVLDQYPP-GLENLFYLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSY-IDHS-PEDIWMMQKLMHL 208 (478)
Q Consensus 133 ~~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~-l~~l-p~~i~~l~~L~~L 208 (478)
.+.|+.|++++|.++.++. .+..+++|++|++++|.+..+ |..+..+++|++|++++|. +..+ |..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 4689999999999997664 589999999999999999966 6789999999999999995 8888 6778899999999
Q ss_pred EeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCc-cccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecC
Q 047959 209 NFGSITLPAPPKNNSSPLKNLIFISALHPS-SCTP-DILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEG 286 (478)
Q Consensus 209 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~ 286 (478)
++++|.+....|..+..+++|++|++.++. ...+ ..++.+++|+.|++++| ......+..+..+++|+.|++++ +
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~-n 187 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN--RISSVPERAFRGLHSLDRLLLHQ-N 187 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCCEECTTTTTTCTTCCEEECCS-S
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC--cccccCHHHhcCccccCEEECCC-C
Confidence 998888877777889999999999999998 4444 45889999999999998 34443444688899999999998 7
Q ss_pred ccccc-CccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccC
Q 047959 287 KMRQL-SRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLE 341 (478)
Q Consensus 287 ~l~~~-p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 341 (478)
.+..+ |. .+.. +++|+.|++++|.+++.....+..+++|+.|++++|.+..
T Consensus 188 ~l~~~~~~---~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 188 RVAHVHPH---AFRD-LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CCCEECTT---TTTT-CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cccccCHh---HccC-cccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 77765 66 7888 9999999999999987666678999999999999998764
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=2e-21 Score=194.17 Aligned_cols=240 Identities=17% Similarity=0.149 Sum_probs=156.9
Q ss_pred EeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccc-hhhhCCCCCcEEeCCCCcCcccc-hhhhccccCcEEEeeCC
Q 047959 136 LRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLP-SLLCTLLNLQTLEMPSSYIDHSP-EDIWMMQKLMHLNFGSI 213 (478)
Q Consensus 136 L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~ 213 (478)
.+.++.++..++.+|..+. +++++|++++|.+..++ ..+.++++|++|++++|.+..++ ..+.++++|++|++++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 4578888888999998765 58999999999999665 67889999999999999988886 56888999999999888
Q ss_pred CCCCCCCCCCCCCCCCcEeCcccCC-CCC-ccccCCCCCCcEEEEEecCCcchhhH-HHhccCCCCCCEEEEEecCcccc
Q 047959 214 TLPAPPKNNSSPLKNLIFISALHPS-SCT-PDILGRLPNVQTLRISGDLSYYHSGV-SKSLCQLHKLECLKLVNEGKMRQ 290 (478)
Q Consensus 214 ~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~l-~~~l~~~~~L~~L~l~~~~~l~~ 290 (478)
.+....+..+..+++|++|++.++. ... ...+.++++|+.|+++++. ....+ ...+..+++|+.|++++ +.++.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~--~l~~i~~~~~~~l~~L~~L~L~~-n~l~~ 199 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK--RLSYISEGAFEGLSNLRYLNLAM-CNLRE 199 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT--TCCEECTTTTTTCSSCCEEECTT-SCCSS
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCC--CcceeCcchhhcccccCeecCCC-CcCcc
Confidence 7665445568888888888888876 322 3356677777777777652 22222 22455566666666665 55555
Q ss_pred cCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCcee
Q 047959 291 LSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWT 370 (478)
Q Consensus 291 ~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~ 370 (478)
+| .+.. +++|+.|++++|.+++..+..+..+++|+.|+|++|.+....... +..+++|+.|+|+++ .++.++
T Consensus 200 ~~----~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~~~ 271 (440)
T 3zyj_A 200 IP----NLTP-LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA--FDNLQSLVEINLAHN-NLTLLP 271 (440)
T ss_dssp CC----CCTT-CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTS--STTCTTCCEEECTTS-CCCCCC
T ss_pred cc----ccCC-CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhh--hcCCCCCCEEECCCC-CCCccC
Confidence 65 3444 566666666666655555555566666666666655554332211 344555555555552 344333
Q ss_pred eC-CCcccccceeEEecCC
Q 047959 371 MG-AGAMPKLESLILNPCA 388 (478)
Q Consensus 371 ~~-~~~~~~L~~L~l~~c~ 388 (478)
.. +..+++|+.|++++|+
T Consensus 272 ~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 272 HDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTTTSSCTTCCEEECCSSC
T ss_pred hhHhccccCCCEEEcCCCC
Confidence 22 2344555555555444
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.84 E-value=1.2e-22 Score=193.45 Aligned_cols=243 Identities=18% Similarity=0.184 Sum_probs=115.7
Q ss_pred CCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCC--ccchhhh-------CCCCCcEEeCCCCcCc-ccchhh-
Q 047959 131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLK--CLPSLLC-------TLLNLQTLEMPSSYID-HSPEDI- 199 (478)
Q Consensus 131 ~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~--~lp~~~~-------~l~~L~~L~l~~~~l~-~lp~~i- 199 (478)
...+.|+.|++++|.+ .+|..+... |+.|++++|.+. .+|..+. ++++|++|++++|.+. .+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred ccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 4445556666666665 555544332 556666665553 3444443 4566666666666554 345444
Q ss_pred -hccccCcEEEeeCCCCCCCCCCCCCCC-----CCCcEeCcccCC--CCCccccCCCCCCcEEEEEecCCcchhh--HHH
Q 047959 200 -WMMQKLMHLNFGSITLPAPPKNNSSPL-----KNLIFISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHSG--VSK 269 (478)
Q Consensus 200 -~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~--l~~ 269 (478)
..+++|++|++++|.+... |..+..+ ++|++|++.++. ...+..++++++|+.|++++|. ..+. .+.
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~ 193 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP--ELGERGLIS 193 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT--TCHHHHHHH
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC--cCcchHHHH
Confidence 5566666666655554433 4444333 555555555555 2222445555555666555552 2211 222
Q ss_pred hc--cCCCCCCEEEEEecCcccccCccc-cccccCCCCceEEEEEeecCCCCCc-CcccCCCCCCeEEEeeCcccCceeE
Q 047959 270 SL--CQLHKLECLKLVNEGKMRQLSRMI-LSEYKFPPSLTQLSLSNTELVEDPM-PTLEELPHLEVLKLKQNSYLERKLA 345 (478)
Q Consensus 270 ~l--~~~~~L~~L~l~~~~~l~~~p~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~~~~ 345 (478)
.+ ..+++|+.|++++ +.++.+|... ..+.. +++|+.|++++|.+.+..+ ..+..+++|++|++++|.++. .+.
T Consensus 194 ~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~-ip~ 270 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRN-AGMETPSGVCSALAAA-RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPK 270 (312)
T ss_dssp HSCTTSCTTCCEEECTT-SCCCCHHHHHHHHHHT-TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS-CCS
T ss_pred HHHhccCCCCCEEECCC-CcCcchHHHHHHHHhc-CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh-hhh
Confidence 33 4555555555554 4444222100 01123 4555555555555544331 233444555555555555441 111
Q ss_pred EeCCCCCcccceeEEecCCCCCceeeCCCcccccceeEEecCC
Q 047959 346 CVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCA 388 (478)
Q Consensus 346 ~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~ 388 (478)
. + +++|++|++++ +.++.+|. ...+++|+.|++++|+
T Consensus 271 ~--~--~~~L~~L~Ls~-N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 271 G--L--PAKLSVLDLSY-NRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp S--C--CSEEEEEECCS-SCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred h--c--cCCceEEECCC-CCCCCChh-HhhCCCCCEEeccCCC
Confidence 1 1 14455555554 23444433 4444555555555443
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.84 E-value=1.8e-22 Score=192.76 Aligned_cols=237 Identities=15% Similarity=0.069 Sum_probs=121.4
Q ss_pred ccCCCCeEeEEEecCCCCCcCC-ccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcE
Q 047959 129 FCKKFKHLRVLNLGSAVLDQYP-PGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMH 207 (478)
Q Consensus 129 ~~~~~~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~ 207 (478)
++..+++|++|++++|.++.++ ..+..+++|++|++++|.+...++ +..+++|++|++++|.+..+|. .++|++
T Consensus 29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~ 103 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIET 103 (317)
T ss_dssp HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCE
T ss_pred HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CCCcCE
Confidence 3455566777777777766544 346677777777777777665443 6667777777777776665542 366777
Q ss_pred EEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CC-CccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEec
Q 047959 208 LNFGSITLPAPPKNNSSPLKNLIFISALHPS-SC-TPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNE 285 (478)
Q Consensus 208 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~-~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~ 285 (478)
|++++|.+....+. .+++|++|++.++. .. .+..++.+++|+.|++++|
T Consensus 104 L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N-------------------------- 154 (317)
T 3o53_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-------------------------- 154 (317)
T ss_dssp EECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS--------------------------
T ss_pred EECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC--------------------------
Confidence 77765544332221 23455555555554 22 2223444555555555554
Q ss_pred CcccccC-cccccc-ccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecC
Q 047959 286 GKMRQLS-RMILSE-YKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSM 363 (478)
Q Consensus 286 ~~l~~~p-~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 363 (478)
.++.++ . .+ .. +++|+.|++++|.++.. +....+++|++|++++|.+.+... . +..+++|++|+++++
T Consensus 155 -~l~~~~~~---~~~~~-l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l~~--~-~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 155 -EIDTVNFA---ELAAS-SDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGP--E-FQSAAGVTWISLRNN 224 (317)
T ss_dssp -CCCEEEGG---GGGGG-TTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECG--G-GGGGTTCSEEECTTS
T ss_pred -CCCcccHH---HHhhc-cCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcchh--h-hcccCcccEEECcCC
Confidence 333221 1 12 23 44555555555544322 222234555555555554432211 1 334455555555552
Q ss_pred CCCCceeeCCCcccccceeEEecCCCC-CCCccccCCCCCCCEEEEec
Q 047959 364 LWLEEWTMGAGAMPKLESLILNPCAYL-RKLPEEQWCIKSLCKLELHW 410 (478)
Q Consensus 364 ~~l~~l~~~~~~~~~L~~L~l~~c~~l-~~lp~~l~~l~~L~~L~l~~ 410 (478)
.++.+|.....+++|+.|++++|+.. ..+|..+..+++|+.+++.+
T Consensus 225 -~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 225 -KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp -CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred -cccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 44455544455555555555555543 33444444555555554443
No 60
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=4.2e-21 Score=191.97 Aligned_cols=243 Identities=21% Similarity=0.169 Sum_probs=124.8
Q ss_pred CCCCeEeEEEecCCCCC-cCCccCCCCCCC-------------ceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccc
Q 047959 131 KKFKHLRVLNLGSAVLD-QYPPGLENLFYL-------------KYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSP 196 (478)
Q Consensus 131 ~~~~~L~~L~L~~~~l~-~lp~~~~~l~~L-------------~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp 196 (478)
+++++|++|++++|.+. .+|.+++.+.+| ++|++++|.++.+|.. .++|++|++++|.+..+|
T Consensus 31 ~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~lp 107 (454)
T 1jl5_A 31 ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELP 107 (454)
T ss_dssp ---CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCC
T ss_pred hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC---cCCCCEEEccCCcCCccc
Confidence 44555555555555544 455555544432 5555555555544431 245555555555555555
Q ss_pred hhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCC
Q 047959 197 EDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLH 275 (478)
Q Consensus 197 ~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~ 275 (478)
.. +++|++|++++|.+.. ++.. .++|++|++.++. ...+ .++++++|++|++++|. .. .++. ..+
T Consensus 108 ~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~--l~-~lp~---~~~ 173 (454)
T 1jl5_A 108 EL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNS--LK-KLPD---LPP 173 (454)
T ss_dssp CC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC--CS-CCCC---CCT
T ss_pred cc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCc--Cc-ccCC---Ccc
Confidence 32 2455555554443321 2211 1456666666655 3333 46666666666666652 11 1221 123
Q ss_pred CCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCccc
Q 047959 276 KLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQL 355 (478)
Q Consensus 276 ~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L 355 (478)
+|+.|++++ +.++.+| .++. +++|+.|++++|.+++. +. ..++|++|++++|.+.. .+ . +..+++|
T Consensus 174 ~L~~L~L~~-n~l~~l~----~~~~-l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~n~l~~-lp--~-~~~l~~L 239 (454)
T 1jl5_A 174 SLEFIAAGN-NQLEELP----ELQN-LPFLTAIYADNNSLKKL-PD---LPLSLESIVAGNNILEE-LP--E-LQNLPFL 239 (454)
T ss_dssp TCCEEECCS-SCCSSCC----CCTT-CTTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCSS-CC--C-CTTCTTC
T ss_pred cccEEECcC-CcCCcCc----cccC-CCCCCEEECCCCcCCcC-CC---CcCcccEEECcCCcCCc-cc--c-cCCCCCC
Confidence 666666665 5555555 3455 66666666666665431 11 12466666666665552 22 1 4566777
Q ss_pred ceeEEecCCCCCceeeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959 356 KILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 356 ~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 412 (478)
++|+++++ .++.+|. .+++|+.|++++|. ++.+|.. +++|+.|++++|.
T Consensus 240 ~~L~l~~N-~l~~l~~---~~~~L~~L~l~~N~-l~~l~~~---~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 240 TTIYADNN-LLKTLPD---LPPSLEALNVRDNY-LTDLPEL---PQSLTFLDVSENI 288 (454)
T ss_dssp CEEECCSS-CCSSCCS---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC
T ss_pred CEEECCCC-cCCcccc---cccccCEEECCCCc-ccccCcc---cCcCCEEECcCCc
Confidence 77777763 4555543 24667777777664 3345442 3566666666654
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=1.5e-22 Score=192.73 Aligned_cols=244 Identities=19% Similarity=0.164 Sum_probs=196.9
Q ss_pred CCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCc--ccchhhh-------ccccCcEEEeeCCCCCCCCCCCC
Q 047959 153 LENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYID--HSPEDIW-------MMQKLMHLNFGSITLPAPPKNNS 223 (478)
Q Consensus 153 ~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~--~lp~~i~-------~l~~L~~L~l~~~~~~~~~~~~~ 223 (478)
++...+|++|++++|.+ .+|..+... |++|+++++.+. .+|..+. ++++|++|++++|.+....|..+
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred EccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 45677899999999999 899877754 999999999774 4676665 79999999999999888888876
Q ss_pred --CCCCCCcEeCcccCC-CCCccccCCC-----CCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccc---cC
Q 047959 224 --SPLKNLIFISALHPS-SCTPDILGRL-----PNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQ---LS 292 (478)
Q Consensus 224 --~~l~~L~~L~l~~~~-~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~---~p 292 (478)
..+++|++|++.++. ...+..++.+ ++|++|++++| ......+..+..+++|+.|++++ +.+.. +|
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~ 192 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA--HSLNFSCEQVRVFPALSTLDLSD-NPELGERGLI 192 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC--SCCCCCTTTCCCCSSCCEEECCS-CTTCHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC--CCccchHHHhccCCCCCEEECCC-CCcCcchHHH
Confidence 899999999999998 4446666666 99999999999 45555567889999999999998 55432 33
Q ss_pred cccccc--ccCCCCceEEEEEeecCCCC--C-cCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCC
Q 047959 293 RMILSE--YKFPPSLTQLSLSNTELVED--P-MPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLE 367 (478)
Q Consensus 293 ~~~~~~--~~~~~~L~~L~l~~~~~~~~--~-~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~ 367 (478)
. .+ .. +++|+.|++++|.++.. . ...+..+++|++|++++|.+.+..+... ...+++|++|+++++ .++
T Consensus 193 ~---~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~Ls~N-~l~ 266 (312)
T 1wwl_A 193 S---ALCPLK-FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS-CDWPSQLNSLNLSFT-GLK 266 (312)
T ss_dssp H---HSCTTS-CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC-CCCCTTCCEEECTTS-CCS
T ss_pred H---HHHhcc-CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh-hhhcCCCCEEECCCC-ccC
Confidence 3 33 66 89999999999998631 1 1234578999999999999887653222 566799999999994 678
Q ss_pred ceeeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959 368 EWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 368 ~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 412 (478)
.+|.... ++|+.|++++|. ++.+|. +..+++|+.|++++++
T Consensus 267 ~ip~~~~--~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 267 QVPKGLP--AKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp SCCSSCC--SEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTCT
T ss_pred hhhhhcc--CCceEEECCCCC-CCCChh-HhhCCCCCEEeccCCC
Confidence 8877655 899999999985 566677 8899999999999986
No 62
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=3.8e-20 Score=172.97 Aligned_cols=201 Identities=20% Similarity=0.214 Sum_probs=161.1
Q ss_pred CeEeEEEecCCCCCcCCc-cCCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCcccc-hhhhccccCcEEEe
Q 047959 134 KHLRVLNLGSAVLDQYPP-GLENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDHSP-EDIWMMQKLMHLNF 210 (478)
Q Consensus 134 ~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l 210 (478)
+.|++|++++|.++.++. .+.++++|++|++++|.+..++. .+..+++|++|++++|.+..++ ..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 468999999999986665 68899999999999999997765 6888999999999999888876 56889999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCcEeCcccCC-CC--CccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCC----EEEEE
Q 047959 211 GSITLPAPPKNNSSPLKNLIFISALHPS-SC--TPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLE----CLKLV 283 (478)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~--~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~----~L~l~ 283 (478)
++|.+....+..+..+++|++|++.++. .. .+..++.+++|+.|++++|. .....+..+..+++|+ .|+++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK--IQSIYCTDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC--CCEECGGGGHHHHTCTTCCEEEECC
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC--CCcCCHHHhhhhhhccccceeeecC
Confidence 8887766555578899999999999888 33 57888999999999999984 3332233333344444 78888
Q ss_pred ecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccC
Q 047959 284 NEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLE 341 (478)
Q Consensus 284 ~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 341 (478)
+ +.++.+|. .... ..+|+.|++++|.++......+..+++|+.|++++|.+..
T Consensus 186 ~-n~l~~~~~---~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 186 L-NPMNFIQP---GAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp S-SCCCEECT---TSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred C-CcccccCc---cccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 7 78888876 5555 6689999999999877666677889999999999888753
No 63
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.82 E-value=4.2e-20 Score=193.26 Aligned_cols=289 Identities=17% Similarity=0.138 Sum_probs=208.6
Q ss_pred CCCCCeeeec---------CccccCCCCeEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCCccch-hhhCCCCCcE
Q 047959 116 SKSDHLALIH---------CENFCKKFKHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQT 184 (478)
Q Consensus 116 ~~~~~lr~l~---------~~~~~~~~~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~ 184 (478)
..+++|+.|+ ....|.++++|++|+|++|.++.+|.. |.++++|++|++++|.++.+|. .++++++|++
T Consensus 73 ~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~ 152 (635)
T 4g8a_A 73 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 152 (635)
T ss_dssp TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred hCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCe
Confidence 4567788872 355678899999999999999877764 8899999999999999988775 4788999999
Q ss_pred EeCCCCcCcc--cchhhhccccCcEEEeeCCCCCCCCC------------------------------------------
Q 047959 185 LEMPSSYIDH--SPEDIWMMQKLMHLNFGSITLPAPPK------------------------------------------ 220 (478)
Q Consensus 185 L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~------------------------------------------ 220 (478)
|++++|.+.. +|..++.+++|++|++++|.+....+
T Consensus 153 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~ 232 (635)
T 4g8a_A 153 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR 232 (635)
T ss_dssp EECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEE
T ss_pred eccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhh
Confidence 9999997764 46778888999999887662211000
Q ss_pred --------------------------------------------------------------------------------
Q 047959 221 -------------------------------------------------------------------------------- 220 (478)
Q Consensus 221 -------------------------------------------------------------------------------- 220 (478)
T Consensus 233 ~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~ 312 (635)
T 4g8a_A 233 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFS 312 (635)
T ss_dssp SCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEE
T ss_pred cccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccc
Confidence
Q ss_pred ----------------------------------------------------CCCCCCCCCcEeCcccCC----------
Q 047959 221 ----------------------------------------------------NNSSPLKNLIFISALHPS---------- 238 (478)
Q Consensus 221 ----------------------------------------------------~~~~~l~~L~~L~l~~~~---------- 238 (478)
.....+++|+.|++..+.
T Consensus 313 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~ 392 (635)
T 4g8a_A 313 LVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS 392 (635)
T ss_dssp EESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHH
T ss_pred ccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccc
Confidence 000112233333333222
Q ss_pred -----------------CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccC
Q 047959 239 -----------------SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKF 301 (478)
Q Consensus 239 -----------------~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~ 301 (478)
...+..+..+++|+.+++..+. .........+..+++++.++++. +.+...+.. .+..
T Consensus 393 ~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~~~l~~l~~l~ls~-n~l~~~~~~--~~~~- 467 (635)
T 4g8a_A 393 DFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISH-THTRVAFNG--IFNG- 467 (635)
T ss_dssp HHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSE-EESTTSSCTTTTCTTCCEEECTT-SCCEECCTT--TTTT-
T ss_pred hhhhhhhhhhhccccccccccccccccccccchhhhhcc-ccccccccccccccccccccccc-ccccccccc--cccc-
Confidence 0011234567788888887763 11112234567889999999987 666654431 5556
Q ss_pred CCCceEEEEEeecCCC-CCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceee-CCCccccc
Q 047959 302 PPSLTQLSLSNTELVE-DPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTM-GAGAMPKL 379 (478)
Q Consensus 302 ~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~-~~~~~~~L 379 (478)
+++|+.|++++|.... ..+..+..+++|++|+|++|.+.+..+.. +.++++|++|+|+++ .++.++. .+..+++|
T Consensus 468 ~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~--f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L 544 (635)
T 4g8a_A 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA--FNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSL 544 (635)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT--TTTCTTCCEEECTTS-CCCBCCCGGGTTCTTC
T ss_pred chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHH--HcCCCCCCEEECCCC-cCCCCChhHHhCCCCC
Confidence 8999999999997433 45567899999999999999887654433 788999999999994 6777654 45789999
Q ss_pred ceeEEecCCCCCCCccccCCC-CCCCEEEEecCc
Q 047959 380 ESLILNPCAYLRKLPEEQWCI-KSLCKLELHWPQ 412 (478)
Q Consensus 380 ~~L~l~~c~~l~~lp~~l~~l-~~L~~L~l~~c~ 412 (478)
+.|++++|......|..+.++ ++|+.|+++++|
T Consensus 545 ~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 545 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 999999998777777788887 689999999754
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=1.2e-22 Score=193.98 Aligned_cols=236 Identities=17% Similarity=0.147 Sum_probs=173.8
Q ss_pred CeEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCCccc-hhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEee
Q 047959 134 KHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCLP-SLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFG 211 (478)
Q Consensus 134 ~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 211 (478)
..++..+++.+.+...+.. +..+++|++|++++|.+..++ ..+..+++|++|++++|.+..+++ +..+++|++|+++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 4466777777776633333 456678888888888888655 568888888888888888776665 7788888888886
Q ss_pred CCCCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccccc
Q 047959 212 SITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQL 291 (478)
Q Consensus 212 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~ 291 (478)
+|.+.. +... ++|+.|++++|. ..+.. ...+++|+.|++++ +.++.+
T Consensus 89 ~n~l~~-----l~~~----------------------~~L~~L~l~~n~--l~~~~---~~~~~~L~~L~l~~-N~l~~~ 135 (317)
T 3o53_A 89 NNYVQE-----LLVG----------------------PSIETLHAANNN--ISRVS---CSRGQGKKNIYLAN-NKITML 135 (317)
T ss_dssp SSEEEE-----EEEC----------------------TTCCEEECCSSC--CSEEE---ECCCSSCEEEECCS-SCCCSG
T ss_pred CCcccc-----ccCC----------------------CCcCEEECCCCc--cCCcC---ccccCCCCEEECCC-CCCCCc
Confidence 664321 1112 445555555442 11111 12356788888887 667665
Q ss_pred CccccccccCCCCceEEEEEeecCCCCCcCcc-cCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCcee
Q 047959 292 SRMILSEYKFPPSLTQLSLSNTELVEDPMPTL-EELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWT 370 (478)
Q Consensus 292 p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~ 370 (478)
+.. .+.. +++|+.|++++|.+.+..+..+ ..+++|++|++++|.+.... . ...+++|++|++++ +.++.++
T Consensus 136 ~~~--~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~--~~~l~~L~~L~Ls~-N~l~~l~ 207 (317)
T 3o53_A 136 RDL--DEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--G--QVVFAKLKTLDLSS-NKLAFMG 207 (317)
T ss_dssp GGB--CTGG-GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--C--CCCCTTCCEEECCS-SCCCEEC
T ss_pred cch--hhhc-cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--c--ccccccCCEEECCC-CcCCcch
Confidence 431 5667 8999999999999877666655 47899999999999886542 1 45689999999999 4788888
Q ss_pred eCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959 371 MGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 371 ~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 412 (478)
.....+++|+.|++++|. ++.+|..+..+++|+.|++++|+
T Consensus 208 ~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 208 PEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp GGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred hhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCC
Confidence 778899999999999985 56788888999999999999987
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=9.3e-22 Score=198.64 Aligned_cols=235 Identities=15% Similarity=0.086 Sum_probs=178.3
Q ss_pred CCCCeEeEEEecCCCCCcCC-ccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEE
Q 047959 131 KKFKHLRVLNLGSAVLDQYP-PGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLN 209 (478)
Q Consensus 131 ~~~~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 209 (478)
..+++|++|+|++|.++.++ ..++.+++|++|++++|.+...++ ++.+++|++|++++|.+..+|. .++|++|+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEE
Confidence 45668999999999998665 569999999999999999986654 8899999999999998888764 38999999
Q ss_pred eeCCCCCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEecCCcchhhHHHhcc-CCCCCCEEEEEecC
Q 047959 210 FGSITLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLC-QLHKLECLKLVNEG 286 (478)
Q Consensus 210 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~-~~~~L~~L~l~~~~ 286 (478)
+++|.+....+. .+++|+.|++.+|. ...+..++.+++|+.|++++| ...+..+..+. .+++|+.|++++ +
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~l~~~l~~L~~L~Ls~-N 179 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN--EIDTVNFAELAASSDTLEHLNLQY-N 179 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS--CCCEEEGGGGGGGTTTCCEEECTT-S
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC--CCCCcChHHHhhhCCcccEEecCC-C
Confidence 988876654443 35789999998887 444566788889999999888 44444555554 678888888887 7
Q ss_pred cccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCC
Q 047959 287 KMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWL 366 (478)
Q Consensus 287 ~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 366 (478)
.++.+|. ... +++|+.|++++|.+++. ++.+..+++|+.|+|++|.+.+. +.. +..+++|+.|++++++-.
T Consensus 180 ~l~~~~~----~~~-l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~l--p~~-l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 180 FIYDVKG----QVV-FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLI--EKA-LRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCCEEEC----CCC-CTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEE--CTT-CCCCTTCCEEECTTCCBC
T ss_pred ccccccc----ccc-CCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCccc--chh-hccCCCCCEEEcCCCCCc
Confidence 7777764 344 78888888888887653 34477888888888888887642 212 566788888888875433
Q ss_pred -CceeeCCCcccccceeEEe
Q 047959 367 -EEWTMGAGAMPKLESLILN 385 (478)
Q Consensus 367 -~~l~~~~~~~~~L~~L~l~ 385 (478)
..+|.....++.|+.+.+.
T Consensus 251 c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 251 CGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred CcchHHHHHhCCCCcEEecc
Confidence 1455555667777777775
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=2.2e-19 Score=167.14 Aligned_cols=198 Identities=23% Similarity=0.268 Sum_probs=138.5
Q ss_pred eEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCcccchhh-hccccCcEEEeeC
Q 047959 135 HLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDHSPEDI-WMMQKLMHLNFGS 212 (478)
Q Consensus 135 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~ 212 (478)
..+.++++++.++.+|..+. .+|++|++++|.+..+|. .+.++++|++|++++|.+..+|..+ ..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 35688899888888887654 588999999998887775 6888899999999999888887654 6788999999977
Q ss_pred CCCCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccc
Q 047959 213 ITLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQ 290 (478)
Q Consensus 213 ~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~ 290 (478)
|.+....+..+..+++|++|++.++. ...+..++.+++|+.|+++++. .....+..+..+++|+.|++++ +.++.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~-n~l~~ 171 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE--LQSLPKGVFDKLTSLKELRLYN-NQLKR 171 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCS-SCCSC
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc--CCccCHhHccCCcccceeEecC-CcCcE
Confidence 77665455556778888888887776 3333446677777777777762 2222233355667777777765 55665
Q ss_pred cCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCccc
Q 047959 291 LSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYL 340 (478)
Q Consensus 291 ~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 340 (478)
+|.. .+.. +++|+.|++++|.++......+..+++|+.|+|++|.+.
T Consensus 172 ~~~~--~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 172 VPEG--AFDK-LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCTT--TTTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred eChh--Hhcc-CCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 5541 2455 667777777777666554445666677777777666553
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=1.8e-19 Score=185.89 Aligned_cols=236 Identities=17% Similarity=0.097 Sum_probs=191.1
Q ss_pred CCeeeec-----CccccCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCc
Q 047959 119 DHLALIH-----CENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYID 193 (478)
Q Consensus 119 ~~lr~l~-----~~~~~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~ 193 (478)
++++.|+ ...++..+++|++|+|++|.++.+|. .+++|++|++++|.++.+|. .+.+|++|++++|.+.
T Consensus 61 ~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~ 134 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLT 134 (622)
T ss_dssp TTCSEEEECSCCCSCCCCCCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCS
T ss_pred CCCcEEEecCCCCCCCCCcCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCC
Confidence 5677772 34555678999999999999999887 77899999999999999987 6789999999999999
Q ss_pred ccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhcc
Q 047959 194 HSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLC 272 (478)
Q Consensus 194 ~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~ 272 (478)
.+|.. +++|++|++++|.+. .+|. .+.+|+.|++.++. ..++ ..+++|+.|++++|. .. .++.
T Consensus 135 ~lp~~---l~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~--l~-~l~~--- 198 (622)
T 3g06_A 135 SLPVL---PPGLQELSVSDNQLA-SLPA---LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQ--LA-SLPT--- 198 (622)
T ss_dssp CCCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSC--CS-CCCC---
T ss_pred cCCCC---CCCCCEEECcCCcCC-CcCC---ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCC--CC-CCCC---
Confidence 99874 589999999888655 4454 35789999999888 5555 567999999999984 22 2322
Q ss_pred CCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCC
Q 047959 273 QLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSF 352 (478)
Q Consensus 273 ~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 352 (478)
.+++|+.|++++ +.++.+|. . +++|+.|++++|.+++.. ..+++|+.|+|++|.+.... ..+
T Consensus 199 ~~~~L~~L~L~~-N~l~~l~~------~-~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp------~~~ 260 (622)
T 3g06_A 199 LPSELYKLWAYN-NRLTSLPA------L-PSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLP------MLP 260 (622)
T ss_dssp CCTTCCEEECCS-SCCSSCCC------C-CTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCC------CCC
T ss_pred ccchhhEEECcC-CcccccCC------C-CCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCC------ccc
Confidence 357999999998 88888885 2 689999999999987532 56789999999999887432 257
Q ss_pred cccceeEEecCCCCCceeeCCCcccccceeEEecCCCCCCCcc
Q 047959 353 PQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPE 395 (478)
Q Consensus 353 ~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~ 395 (478)
++|+.|++++| .++.+|..+..+++|+.|++++|+..+..|.
T Consensus 261 ~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 261 SGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp TTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred ccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 89999999995 7888988889999999999999986654444
No 68
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=2.6e-19 Score=169.97 Aligned_cols=195 Identities=20% Similarity=0.241 Sum_probs=156.4
Q ss_pred CCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEe
Q 047959 131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNF 210 (478)
Q Consensus 131 ~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 210 (478)
..+++|+.|++++|.++.++ .+..+++|++|++++|.+..++. +..+++|++|++++|.+..++ .+..+++|++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 45678999999999998887 48899999999999999998887 899999999999999998886 5889999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccc
Q 047959 211 GSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMR 289 (478)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~ 289 (478)
++|.+.. ++ .+..+++|++|++.++. ...+ .++.+++|+.|++++|. ... ++. +..+++|+.|++++ +.++
T Consensus 115 ~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~--l~~-~~~-l~~l~~L~~L~l~~-n~l~ 186 (308)
T 1h6u_A 115 TSTQITD-VT-PLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQ--VSD-LTP-LANLSKLTTLKADD-NKIS 186 (308)
T ss_dssp TTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSC--CCC-CGG-GTTCTTCCEEECCS-SCCC
T ss_pred CCCCCCC-ch-hhcCCCCCCEEECCCCccCcCc-cccCCCCccEEEccCCc--CCC-Chh-hcCCCCCCEEECCC-CccC
Confidence 8776654 44 38888999999998887 3333 37888889999998873 222 222 77888888888887 7777
Q ss_pred ccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCce
Q 047959 290 QLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERK 343 (478)
Q Consensus 290 ~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 343 (478)
.++ .+.. +++|+.|++++|.+.+.. .+..+++|+.|++++|.+....
T Consensus 187 ~~~----~l~~-l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 187 DIS----PLAS-LPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CCG----GGGG-CTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCC
T ss_pred cCh----hhcC-CCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCC
Confidence 776 3566 888888888888876543 4788888888888888876543
No 69
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=1.4e-22 Score=203.87 Aligned_cols=269 Identities=19% Similarity=0.129 Sum_probs=194.2
Q ss_pred eEeEEEecCCCCC-----cCCccCCCCCCCceEeecCCCCCc-cchhhh-----CCCCCcEEeCCCCcCcc-----cchh
Q 047959 135 HLRVLNLGSAVLD-----QYPPGLENLFYLKYLKLNIPSLKC-LPSLLC-----TLLNLQTLEMPSSYIDH-----SPED 198 (478)
Q Consensus 135 ~L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~l~~~~i~~-lp~~~~-----~l~~L~~L~l~~~~l~~-----lp~~ 198 (478)
+|++|++++|.++ .++..+..+++|++|++++|.+.. .+..+. ...+|++|++++|.+.. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 7999999999987 457778899999999999998772 222222 25679999999997754 4566
Q ss_pred hhccccCcEEEeeCCCCCCCCCCCCC-----CCCCCcEeCcccCC-CC-----CccccCCCCCCcEEEEEecCCcchhh-
Q 047959 199 IWMMQKLMHLNFGSITLPAPPKNNSS-----PLKNLIFISALHPS-SC-----TPDILGRLPNVQTLRISGDLSYYHSG- 266 (478)
Q Consensus 199 i~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~-~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~- 266 (478)
+..+++|++|++++|.+....+..+. ..++|++|++.+|. .. .+..+..+++|++|++++|. ....
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~--l~~~~ 243 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK--LGDVG 243 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB--CHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc--CChHH
Confidence 77889999999987765432222221 35689999999887 22 45667788999999999983 3322
Q ss_pred ---HHH-hccCCCCCCEEEEEecCcccc-----cCccccccccCCCCceEEEEEeecCCCCCcCccc-----CCCCCCeE
Q 047959 267 ---VSK-SLCQLHKLECLKLVNEGKMRQ-----LSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLE-----ELPHLEVL 332 (478)
Q Consensus 267 ---l~~-~l~~~~~L~~L~l~~~~~l~~-----~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L 332 (478)
+.. ....+++|+.|++++ +.++. ++. .+.. +++|+.|++++|.+.+..+..+. ..++|++|
T Consensus 244 ~~~l~~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~---~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 244 MAELCPGLLHPSSRLRTLWIWE-CGITAKGCGDLCR---VLRA-KESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTT-SCCCHHHHHHHHH---HHHH-CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred HHHHHHHHhcCCCCceEEECcC-CCCCHHHHHHHHH---HHhh-CCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence 222 334688999999998 56665 676 6777 89999999999987544333332 23699999
Q ss_pred EEeeCcccCcee---EEeCCCCCcccceeEEecCCCCCcee-eCCC-----cccccceeEEecCCCCC----CCccccCC
Q 047959 333 KLKQNSYLERKL---ACVGCSSFPQLKILHLKSMLWLEEWT-MGAG-----AMPKLESLILNPCAYLR----KLPEEQWC 399 (478)
Q Consensus 333 ~L~~~~~~~~~~---~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~-----~~~~L~~L~l~~c~~l~----~lp~~l~~ 399 (478)
++++|.+++... ... +..+++|++|+++++ .++... .... ..++|+.|++++|.... .+|..+..
T Consensus 319 ~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 396 (461)
T 1z7x_W 319 WVKSCSFTAACCSHFSSV-LAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA 396 (461)
T ss_dssp ECTTSCCBGGGHHHHHHH-HHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH
T ss_pred EcCCCCCchHHHHHHHHH-HhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHh
Confidence 999998775431 111 345689999999986 555321 1111 26799999999996543 67777888
Q ss_pred CCCCCEEEEecCc
Q 047959 400 IKSLCKLELHWPQ 412 (478)
Q Consensus 400 l~~L~~L~l~~c~ 412 (478)
+++|++|++++|+
T Consensus 397 ~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 397 NHSLRELDLSNNC 409 (461)
T ss_dssp CCCCCEEECCSSS
T ss_pred CCCccEEECCCCC
Confidence 9999999999987
No 70
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=1.3e-21 Score=188.35 Aligned_cols=250 Identities=18% Similarity=0.190 Sum_probs=152.0
Q ss_pred EeEEEecCCCCCcCCccCCCC--CCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcc--cchhhhccccCcEEEee
Q 047959 136 LRVLNLGSAVLDQYPPGLENL--FYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDH--SPEDIWMMQKLMHLNFG 211 (478)
Q Consensus 136 L~~L~L~~~~l~~lp~~~~~l--~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~ 211 (478)
++.++++++.+. +..+..+ ++++.|+++++.+...+..+..+++|++|++++|.+.. +|..+..+++|++|+++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 456666666554 2334444 56666666666666444445566666666666665432 55556666666666665
Q ss_pred CCCCCCCCCCCCCCCCCCcEeCcccCC--C--CCccccCCCCCCcEEEEEecCCcchhhHHHhccCCC-CCCEEEEEecC
Q 047959 212 SITLPAPPKNNSSPLKNLIFISALHPS--S--CTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLH-KLECLKLVNEG 286 (478)
Q Consensus 212 ~~~~~~~~~~~~~~l~~L~~L~l~~~~--~--~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~-~L~~L~l~~~~ 286 (478)
+|......+..+..+++|++|++.+|. . ..+..+.++++|++|++++|.......++..+..++ +|++|+++++.
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 554444444455556666666666662 1 234446677788888888772133334566677778 88888888742
Q ss_pred -cc--cccCccccccccCCCCceEEEEEeec-CCCCCcCcccCCCCCCeEEEeeCc-ccCceeEEeCCCCCcccceeEEe
Q 047959 287 -KM--RQLSRMILSEYKFPPSLTQLSLSNTE-LVEDPMPTLEELPHLEVLKLKQNS-YLERKLACVGCSSFPQLKILHLK 361 (478)
Q Consensus 287 -~l--~~~p~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~~L~~L~L~ 361 (478)
.+ ..+|. .+.. +++|+.|++++|. +++..+..++.+++|++|++++|. +....+.. +..+++|+.|+++
T Consensus 207 ~~~~~~~l~~---~~~~-~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--l~~~~~L~~L~l~ 280 (336)
T 2ast_B 207 KNLQKSDLST---LVRR-CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE--LGEIPTLKTLQVF 280 (336)
T ss_dssp GGSCHHHHHH---HHHH-CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG--GGGCTTCCEEECT
T ss_pred ccCCHHHHHH---HHhh-CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH--HhcCCCCCEEecc
Confidence 33 34565 5666 7888888888887 555666677788888888888774 33322211 5567888888888
Q ss_pred cCCCCCceeeCCCcc-cccceeEEecCCCCCCCcccc
Q 047959 362 SMLWLEEWTMGAGAM-PKLESLILNPCAYLRKLPEEQ 397 (478)
Q Consensus 362 ~~~~l~~l~~~~~~~-~~L~~L~l~~c~~l~~lp~~l 397 (478)
+| ++.- ....+ .+|+.|++++|...+..|..+
T Consensus 281 ~~--i~~~--~~~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 281 GI--VPDG--TLQLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp TS--SCTT--CHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred Cc--cCHH--HHHHHHhhCcceEEecccCccccCCcc
Confidence 76 2211 11223 346777777666555555543
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=7.7e-21 Score=191.92 Aligned_cols=231 Identities=13% Similarity=0.050 Sum_probs=127.2
Q ss_pred CCCCCceEeecCCCCCccc-hhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeC
Q 047959 155 NLFYLKYLKLNIPSLKCLP-SLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFIS 233 (478)
Q Consensus 155 ~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 233 (478)
.+++|++|++++|.+..++ ..++.+++|++|++++|.+...++ +..+++|++|++++|.+.. +| ..++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-LL----VGPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE-EE----ECTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC-CC----CCCCcCEEE
Confidence 3448999999999888654 578888999999999998876665 7888889999987775432 22 236777777
Q ss_pred cccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccc-cCccccccc-cCCCCceEEEE
Q 047959 234 ALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQ-LSRMILSEY-KFPPSLTQLSL 310 (478)
Q Consensus 234 l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~-~p~~~~~~~-~~~~~L~~L~l 310 (478)
+.+|. ...+. ..+++|+.|++++| ...+..+..+..+++|+.|++++ +.++. .|. .+. . +++|+.|++
T Consensus 106 L~~N~l~~~~~--~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~---~l~~~-l~~L~~L~L 176 (487)
T 3oja_A 106 AANNNISRVSC--SRGQGKKNIYLANN--KITMLRDLDEGCRSRVQYLDLKL-NEIDTVNFA---ELAAS-SDTLEHLNL 176 (487)
T ss_dssp CCSSCCCCEEE--CCCSSCEEEECCSS--CCCSGGGBCGGGGSSEEEEECTT-SCCCEEEGG---GGGGG-TTTCCEEEC
T ss_pred CcCCcCCCCCc--cccCCCCEEECCCC--CCCCCCchhhcCCCCCCEEECCC-CCCCCcChH---HHhhh-CCcccEEec
Confidence 77665 22221 23455666666655 23333333444555555555554 44432 222 332 3 455555555
Q ss_pred EeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceeeCCCcccccceeEEecCCCC
Q 047959 311 SNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYL 390 (478)
Q Consensus 311 ~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l 390 (478)
++|.+++. +....+++|+.|+|++|.+++..+. +..+++|+.|++++ +.++.+|.....+++|+.|++++|+..
T Consensus 177 s~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 177 QYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGPE---FQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp TTSCCCEE--ECCCCCTTCCEEECCSSCCCEECGG---GGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred CCCccccc--cccccCCCCCEEECCCCCCCCCCHh---HcCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCCCCCc
Confidence 55554332 2223355555555555554432211 34445555555555 244444444445555555555555433
Q ss_pred -CCCccccCCCCCCCEE
Q 047959 391 -RKLPEEQWCIKSLCKL 406 (478)
Q Consensus 391 -~~lp~~l~~l~~L~~L 406 (478)
..+|..+..+++|+.+
T Consensus 251 c~~~~~~~~~l~~L~~l 267 (487)
T 3oja_A 251 CGTLRDFFSKNQRVQTV 267 (487)
T ss_dssp HHHHHHHHTTCHHHHHH
T ss_pred CcchHHHHHhCCCCcEE
Confidence 2333333434433333
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.78 E-value=3.9e-19 Score=166.08 Aligned_cols=216 Identities=19% Similarity=0.180 Sum_probs=146.3
Q ss_pred EEEecCCCCCcCCccCCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCcccch-hhhccccCcEEEeeCCCC
Q 047959 138 VLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDHSPE-DIWMMQKLMHLNFGSITL 215 (478)
Q Consensus 138 ~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~ 215 (478)
..+-.+..++.+|..+. ++|++|++++|.++.++. .+.++++|++|++++|.+..++. .+..+++|++|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 34555566778887664 489999999999997775 78889999999999998888865 678899999999988876
Q ss_pred CCCCCCCCCCCCCCcEeCcccCC-CCC-ccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccc--c
Q 047959 216 PAPPKNNSSPLKNLIFISALHPS-SCT-PDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQ--L 291 (478)
Q Consensus 216 ~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~--~ 291 (478)
....+..+..+++|++|++.++. ... +..++.+++|++|+++++ .++. +
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n---------------------------~l~~~~l 141 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN---------------------------LIQSFKL 141 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS---------------------------CCCCCCC
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC---------------------------ccceecC
Confidence 66556667778888888777765 222 223455555555555544 3332 4
Q ss_pred CccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCC----eEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCC
Q 047959 292 SRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLE----VLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLE 367 (478)
Q Consensus 292 p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~----~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~ 367 (478)
|. .+.. +++|+.|++++|.+++.....+..+++|+ .|++++|.+...... .....+|+.|+++++ .++
T Consensus 142 ~~---~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~---~~~~~~L~~L~L~~n-~l~ 213 (276)
T 2z62_A 142 PE---YFSN-LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG---AFKEIRLKELALDTN-QLK 213 (276)
T ss_dssp CG---GGGG-CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTT---SSCSCCEEEEECCSS-CCS
T ss_pred ch---hhcc-CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcc---ccCCCcccEEECCCC-cee
Confidence 55 5666 67777777777766554444555444444 677776666533221 223347888888874 566
Q ss_pred ceeeC-CCcccccceeEEecCCCC
Q 047959 368 EWTMG-AGAMPKLESLILNPCAYL 390 (478)
Q Consensus 368 ~l~~~-~~~~~~L~~L~l~~c~~l 390 (478)
.++.. ...+++|+.|++++|+..
T Consensus 214 ~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 214 SVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCCTTTTTTCCSCCEEECCSSCBC
T ss_pred ecCHhHhcccccccEEEccCCccc
Confidence 66654 366888888888887643
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=1.3e-18 Score=163.54 Aligned_cols=199 Identities=20% Similarity=0.139 Sum_probs=155.5
Q ss_pred CCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCcc-chhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEE
Q 047959 131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLN 209 (478)
Q Consensus 131 ~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 209 (478)
.+++.++.++++++.++.+|..+. +++++|++++|.+..+ |..+..+++|++|++++|.+..++.. +.+++|++|+
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence 567788999999999998887764 6899999999999865 46788999999999999999888764 7889999999
Q ss_pred eeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCC-ccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCc
Q 047959 210 FGSITLPAPPKNNSSPLKNLIFISALHPS-SCT-PDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGK 287 (478)
Q Consensus 210 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~ 287 (478)
+++|.+. .+|..+..+++|+.|++.++. ... +..+.++++|+.|++++| ......+..+..+++|+.|++++ +.
T Consensus 84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~-N~ 159 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN--ELKTLPPGLLTPTPKLEKLSLAN-NN 159 (290)
T ss_dssp CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS--CCCCCCTTTTTTCTTCCEEECTT-SC
T ss_pred CCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC--CCCccChhhcccccCCCEEECCC-Cc
Confidence 9777665 677778888999999988887 444 356788888888888887 33333344566788888888887 77
Q ss_pred ccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCccc
Q 047959 288 MRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYL 340 (478)
Q Consensus 288 l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 340 (478)
++.+|.. .+.. +++|+.|++++|.++ ..+..+...++|+.|+|++|.+.
T Consensus 160 l~~l~~~--~~~~-l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 160 LTELPAG--LLNG-LENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CSCCCTT--TTTT-CTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCccCHH--HhcC-cCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 7777761 2355 788888888888875 45556666778888888877764
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=5.2e-19 Score=161.55 Aligned_cols=184 Identities=18% Similarity=0.277 Sum_probs=91.1
Q ss_pred CCcCCccCCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCc-Ccccch-hhhccccCcEEEeeC-CCCCCCCCC
Q 047959 146 LDQYPPGLENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSY-IDHSPE-DIWMMQKLMHLNFGS-ITLPAPPKN 221 (478)
Q Consensus 146 l~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~-l~~lp~-~i~~l~~L~~L~l~~-~~~~~~~~~ 221 (478)
++.+|. +.. +|++|++++|.++.+|. .+..+++|++|++++|. +..++. .+..+++|++|++++ |.+....+.
T Consensus 23 l~~ip~-~~~--~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS-LPP--STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC-CCT--TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC-CCC--cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 555555 332 66677777776666654 46666677777777664 666654 455666677776655 444332233
Q ss_pred CCCCCCCCcEeCcccCC-CCCccccCCCCCCc---EEEEEecCCcchhhH-HHhccCCCCCC-EEEEEecCcccccCccc
Q 047959 222 NSSPLKNLIFISALHPS-SCTPDILGRLPNVQ---TLRISGDLSYYHSGV-SKSLCQLHKLE-CLKLVNEGKMRQLSRMI 295 (478)
Q Consensus 222 ~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~---~L~l~~~~~~~~~~l-~~~l~~~~~L~-~L~l~~~~~l~~~p~~~ 295 (478)
.+..+++|++|++.++. ...+. +..+++|+ .|+++++. ....+ +..+..+++|+ .|++++ +.++.+|.
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~--~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~-- 173 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNP--YMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQG-- 173 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCT--TCCEECTTTTTTTBSSEEEEECCS-CCCCEECT--
T ss_pred HhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCc--chhhcCcccccchhcceeEEEcCC-CCCcccCH--
Confidence 34445555555555444 22222 44444444 55555441 11111 12234444555 555544 44444444
Q ss_pred cccccCCCCceEEEEEeec-CCCCCcCcccCC-CCCCeEEEeeCccc
Q 047959 296 LSEYKFPPSLTQLSLSNTE-LVEDPMPTLEEL-PHLEVLKLKQNSYL 340 (478)
Q Consensus 296 ~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l-~~L~~L~L~~~~~~ 340 (478)
.... .++|+.|++++|+ ++......+..+ ++|+.|++++|.+.
T Consensus 174 -~~~~-~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 174 -YAFN-GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp -TTTT-TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred -hhcC-CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 3333 3445555555552 433333344444 44444444444443
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.78 E-value=9e-19 Score=163.20 Aligned_cols=208 Identities=19% Similarity=0.208 Sum_probs=121.4
Q ss_pred CCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchh-hhccccCcEEE
Q 047959 131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPED-IWMMQKLMHLN 209 (478)
Q Consensus 131 ~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~ 209 (478)
..++.|+.|+++++.++.++. +..+++|++|++++|.+..++ .+..+++|++|++++|.+..+|.. +..+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 455667777777777665553 666777777777777776654 566777777777777777666543 46677777777
Q ss_pred eeCCCCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccc
Q 047959 210 FGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMR 289 (478)
Q Consensus 210 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~ 289 (478)
+++|.+....+..+..+++|++|++.+|. .....+..+..+++|+.|++++ +.++
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~------------------------l~~~~~~~~~~l~~L~~L~l~~-n~l~ 170 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQ------------------------LQSLPKGVFDKLTNLTELDLSY-NQLQ 170 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSC------------------------CCCCCTTTTTTCTTCCEEECCS-SCCC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCc------------------------cCccCHHHhccCccCCEEECCC-CCcC
Confidence 76665544333334555555555555443 1111122234455555555554 4444
Q ss_pred ccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCce
Q 047959 290 QLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEW 369 (478)
Q Consensus 290 ~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l 369 (478)
.+|.. .+.. +++|+.|++++|.+++..+..++.+++|+.|++++|.+. +.+++|+.|.++.+.....+
T Consensus 171 ~~~~~--~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---------~~~~~l~~l~~~~n~~~g~i 238 (272)
T 3rfs_A 171 SLPEG--VFDK-LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---------CTCPGIRYLSEWINKHSGVV 238 (272)
T ss_dssp CCCTT--TTTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC---------CCTTTTHHHHHHHHHTGGGB
T ss_pred ccCHH--HhcC-CccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc---------ccCcHHHHHHHHHHhCCCcc
Confidence 44430 2355 667777777777766655555666777777777766542 33556666666654333355
Q ss_pred eeCCCccc
Q 047959 370 TMGAGAMP 377 (478)
Q Consensus 370 ~~~~~~~~ 377 (478)
|...+.++
T Consensus 239 p~~~~~~~ 246 (272)
T 3rfs_A 239 RNSAGSVA 246 (272)
T ss_dssp BCTTSCBC
T ss_pred cCcccccC
Confidence 55444433
No 76
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.78 E-value=1.4e-22 Score=203.99 Aligned_cols=131 Identities=17% Similarity=0.128 Sum_probs=64.0
Q ss_pred ccCCCCeEeEEEecCCCCC-----cCCccCCCCCCCceEeecCCCCCc-cchhh-hCCC----CCcEEeCCCCcCc----
Q 047959 129 FCKKFKHLRVLNLGSAVLD-----QYPPGLENLFYLKYLKLNIPSLKC-LPSLL-CTLL----NLQTLEMPSSYID---- 193 (478)
Q Consensus 129 ~~~~~~~L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~l~~~~i~~-lp~~~-~~l~----~L~~L~l~~~~l~---- 193 (478)
++..+++|++|++++|.++ .++..+..+++|++|++++|.+.. .+..+ ..+. +|++|++++|.+.
T Consensus 23 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 23 LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred HHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 3455556666666666654 334445555666666666665542 12222 2233 4666666666554
Q ss_pred -ccchhhhccccCcEEEeeCCCCCCCCCCC-----CCCCCCCcEeCcccCC-C-----CCccccCCCCCCcEEEEEec
Q 047959 194 -HSPEDIWMMQKLMHLNFGSITLPAPPKNN-----SSPLKNLIFISALHPS-S-----CTPDILGRLPNVQTLRISGD 259 (478)
Q Consensus 194 -~lp~~i~~l~~L~~L~l~~~~~~~~~~~~-----~~~l~~L~~L~l~~~~-~-----~~~~~l~~l~~L~~L~l~~~ 259 (478)
.+|..+..+++|++|++++|.+....+.. ....++|++|++.+|. . ..+..+..+++|++|++++|
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 180 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC
Confidence 33555556666666666555432211111 1123455555555554 1 12333444555555555555
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.78 E-value=4.8e-19 Score=165.05 Aligned_cols=129 Identities=24% Similarity=0.332 Sum_probs=102.6
Q ss_pred cCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchh-hhCCCCCcEEeCCCCcCcccchh-hhccccCcE
Q 047959 130 CKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSL-LCTLLNLQTLEMPSSYIDHSPED-IWMMQKLMH 207 (478)
Q Consensus 130 ~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~ 207 (478)
+..+++|++|++++|.++.++ .+..+++|++|++++|.+..+|.. ++.+++|++|++++|.+..+|.. +..+++|++
T Consensus 59 l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 137 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE
Confidence 477899999999999998765 689999999999999999977755 68999999999999999888765 689999999
Q ss_pred EEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCC-ccccCCCCCCcEEEEEec
Q 047959 208 LNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCT-PDILGRLPNVQTLRISGD 259 (478)
Q Consensus 208 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~ 259 (478)
|++++|.+....+..+..+++|++|++.+|. ... +..++.+++|+.|++++|
T Consensus 138 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 9998887765555556778888888877776 222 223455555555555554
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.78 E-value=1.8e-18 Score=161.04 Aligned_cols=175 Identities=23% Similarity=0.267 Sum_probs=113.2
Q ss_pred CCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccch-hhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCccc
Q 047959 158 YLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPE-DIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALH 236 (478)
Q Consensus 158 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 236 (478)
+.+.++++++.++.+|..+. .+|++|++++|.+..+|. .+.++++|++|++++|.+....+..+..+++|++|++.+
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 67899999999999987664 689999999999988875 688899999999987766543334457788888888887
Q ss_pred CC-CCC-ccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeec
Q 047959 237 PS-SCT-PDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTE 314 (478)
Q Consensus 237 ~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~ 314 (478)
+. ... +..+..+++|+.|+++++ ......+..+..+++|+.|++++ +.++.+|.. .+.. +++|+.|++++|.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~--~~~~-l~~L~~L~L~~n~ 168 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRN--QLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKG--VFDK-LTSLKELRLYNNQ 168 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTT--TTTT-CTTCCEEECCSSC
T ss_pred CcCCcCCHhHcccccCCCEEECCCC--ccCeeCHHHhCcCcCCCEEECCC-CcCCccCHh--HccC-CcccceeEecCCc
Confidence 76 333 234566677777777666 22222233345555566666555 445544431 2344 5555555555555
Q ss_pred CCCCCcCcccCCCCCCeEEEeeCccc
Q 047959 315 LVEDPMPTLEELPHLEVLKLKQNSYL 340 (478)
Q Consensus 315 ~~~~~~~~l~~l~~L~~L~L~~~~~~ 340 (478)
++......+..+++|++|++++|.+.
T Consensus 169 l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 169 LKRVPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CcEeChhHhccCCCcCEEECCCCcCC
Confidence 54444444555555555555555443
No 79
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.77 E-value=1.1e-19 Score=188.55 Aligned_cols=277 Identities=12% Similarity=0.062 Sum_probs=147.4
Q ss_pred CCCCeEeEEEecCCCCCc-----CCccCCCCCCCceEeecCCCCC-----ccchhhhCCCCCcEEeCCCCcCcccchhhh
Q 047959 131 KKFKHLRVLNLGSAVLDQ-----YPPGLENLFYLKYLKLNIPSLK-----CLPSLLCTLLNLQTLEMPSSYIDHSPEDIW 200 (478)
Q Consensus 131 ~~~~~L~~L~L~~~~l~~-----lp~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~ 200 (478)
..+++|++|+|++|.++. ++.....+++|++|++++|.+. .++..+.++++|++|++++|.+..+|..+.
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~ 240 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFK 240 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHH
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHh
Confidence 578889999999988652 3333456788999999988875 455566788999999999998888888888
Q ss_pred ccccCcEEEeeCCCCC---CCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecC----------------
Q 047959 201 MMQKLMHLNFGSITLP---APPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDL---------------- 260 (478)
Q Consensus 201 ~l~~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~---------------- 260 (478)
.+++|++|+++..... ...+..+..+++|+.|.+..+. ...+..+..+++|++|++++|.
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 9999999998543222 1223344555555555554443 3334444444555555555442
Q ss_pred -------CcchhhHHHhccCCCCCCEEEEEe----------cCccc--ccCccccccccCCCCceEEEEEeecCCCCCcC
Q 047959 261 -------SYYHSGVSKSLCQLHKLECLKLVN----------EGKMR--QLSRMILSEYKFPPSLTQLSLSNTELVEDPMP 321 (478)
Q Consensus 261 -------~~~~~~l~~~l~~~~~L~~L~l~~----------~~~l~--~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 321 (478)
......++.....+++|++|++++ |+.++ .++. .... +++|++|++..+.+++..+.
T Consensus 321 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~---l~~~-~~~L~~L~l~~~~l~~~~~~ 396 (592)
T 3ogk_B 321 EVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA---LAQG-CQELEYMAVYVSDITNESLE 396 (592)
T ss_dssp CEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH---HHHH-CTTCSEEEEEESCCCHHHHH
T ss_pred CEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH---HHhh-CccCeEEEeecCCccHHHHH
Confidence 022223333333445555555552 33333 1221 1233 55666666655554443333
Q ss_pred cccC-CCCCCeEEEee----CcccCce----eEEeCCCCCcccceeEEecCCC-CC--ceeeCCCcccccceeEEecCCC
Q 047959 322 TLEE-LPHLEVLKLKQ----NSYLERK----LACVGCSSFPQLKILHLKSMLW-LE--EWTMGAGAMPKLESLILNPCAY 389 (478)
Q Consensus 322 ~l~~-l~~L~~L~L~~----~~~~~~~----~~~~~~~~~~~L~~L~L~~~~~-l~--~l~~~~~~~~~L~~L~l~~c~~ 389 (478)
.++. +++|+.|++.+ +.+++.. +... ..++++|++|++++|.+ ++ .+......+++|+.|++++|..
T Consensus 397 ~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~-~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l 475 (592)
T 3ogk_B 397 SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL-LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGE 475 (592)
T ss_dssp HHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH-HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCS
T ss_pred HHHhhCCCCcEEEEeecCCCccccCchHHHHHHHH-HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCC
Confidence 3433 56666666642 2333210 0000 22355555555544332 11 0000011245555555555542
Q ss_pred CC-CCccccCCCCCCCEEEEecCc
Q 047959 390 LR-KLPEEQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 390 l~-~lp~~l~~l~~L~~L~l~~c~ 412 (478)
.. .++..+.++++|+.|++++|+
T Consensus 476 ~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 476 SDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp SHHHHHHHHTCCTTCCEEEEESCC
T ss_pred CHHHHHHHHhcCcccCeeeccCCC
Confidence 21 123334455666666666664
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.75 E-value=7.4e-18 Score=159.88 Aligned_cols=196 Identities=19% Similarity=0.197 Sum_probs=145.3
Q ss_pred CCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEe
Q 047959 153 LENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFI 232 (478)
Q Consensus 153 ~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 232 (478)
...+++|++|++++|.+..+| .+..+++|++|++++|.+..++. +..+++|++|++++|.+.. ++ .+..+++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEE
T ss_pred HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEE
Confidence 456889999999999999887 68899999999999999999988 8999999999998876543 33 57888888888
Q ss_pred CcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEE
Q 047959 233 SALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLS 311 (478)
Q Consensus 233 ~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~ 311 (478)
++.++. ...+ .+..+++|+.|++++|. ... ++. +..+++|+.|++++ +.++.++ .+.. +++|+.|+++
T Consensus 113 ~l~~n~l~~~~-~l~~l~~L~~L~l~~n~--l~~-~~~-l~~l~~L~~L~l~~-n~l~~~~----~l~~-l~~L~~L~l~ 181 (308)
T 1h6u_A 113 DLTSTQITDVT-PLAGLSNLQVLYLDLNQ--ITN-ISP-LAGLTNLQYLSIGN-AQVSDLT----PLAN-LSKLTTLKAD 181 (308)
T ss_dssp ECTTSCCCCCG-GGTTCTTCCEEECCSSC--CCC-CGG-GGGCTTCCEEECCS-SCCCCCG----GGTT-CTTCCEEECC
T ss_pred ECCCCCCCCch-hhcCCCCCCEEECCCCc--cCc-Ccc-ccCCCCccEEEccC-CcCCCCh----hhcC-CCCCCEEECC
Confidence 888887 3333 47888888888888873 221 121 66777888888876 6666666 3555 7788888888
Q ss_pred eecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCcee
Q 047959 312 NTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWT 370 (478)
Q Consensus 312 ~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~ 370 (478)
+|.+++.. .+..+++|++|++++|.+.+.. . +..+++|+.|+++++ .++..|
T Consensus 182 ~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~---~-l~~l~~L~~L~l~~N-~i~~~~ 233 (308)
T 1h6u_A 182 DNKISDIS--PLASLPNLIEVHLKNNQISDVS---P-LANTSNLFIVTLTNQ-TITNQP 233 (308)
T ss_dssp SSCCCCCG--GGGGCTTCCEEECTTSCCCBCG---G-GTTCTTCCEEEEEEE-EEECCC
T ss_pred CCccCcCh--hhcCCCCCCEEEccCCccCccc---c-ccCCCCCCEEEccCC-eeecCC
Confidence 88765432 3677778888888777766543 1 566777777777774 344433
No 81
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.74 E-value=6.9e-20 Score=190.20 Aligned_cols=278 Identities=14% Similarity=0.061 Sum_probs=190.3
Q ss_pred ccCCCCeEeEEEecCCCCC-----cCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCC--------------
Q 047959 129 FCKKFKHLRVLNLGSAVLD-----QYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPS-------------- 189 (478)
Q Consensus 129 ~~~~~~~L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~-------------- 189 (478)
++..++.|+.|++++|.++ .++..+.++++|++|++++|.+..+|..+..+++|+.|+++.
T Consensus 187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 4467888888888888875 334445677888888888888777777777777777777753
Q ss_pred -------------CcCcccchhhhccccCcEEEeeCCCCCCCC-CCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcE
Q 047959 190 -------------SYIDHSPEDIWMMQKLMHLNFGSITLPAPP-KNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQT 253 (478)
Q Consensus 190 -------------~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~ 253 (478)
+....+|..+..+++|++|++++|...... +..+..+++|++|++..+. ...+.....+++|++
T Consensus 267 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKR 346 (592)
T ss_dssp CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred hccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCE
Confidence 333455666778889999999776633221 1235778889999887443 233334467899999
Q ss_pred EEEEe----------cCCcchhhHHHhccCCCCCCEEEEEecCcccc-cCccccccccCCCCceEEEEEee----cCCCC
Q 047959 254 LRISG----------DLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQ-LSRMILSEYKFPPSLTQLSLSNT----ELVED 318 (478)
Q Consensus 254 L~l~~----------~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~-~p~~~~~~~~~~~~L~~L~l~~~----~~~~~ 318 (478)
|++++ +.......+......+++|+.|++.. +.++. .+. .++..+++|+.|+++++ .+++.
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~-~~l~~~~~~---~l~~~~~~L~~L~l~~~~~~n~l~~~ 422 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV-SDITNESLE---SIGTYLKNLCDFRLVLLDREERITDL 422 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE-SCCCHHHHH---HHHHHCCSCCEEEEEECSCCSCCSSC
T ss_pred EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec-CCccHHHHH---HHHhhCCCCcEEEEeecCCCccccCc
Confidence 99994 43234444555566789999999965 66652 222 33222789999999843 44432
Q ss_pred C-----cCcccCCCCCCeEEEeeCc--ccCceeEEeCCCCCcccceeEEecCCCCC--ceeeCCCcccccceeEEecCCC
Q 047959 319 P-----MPTLEELPHLEVLKLKQNS--YLERKLACVGCSSFPQLKILHLKSMLWLE--EWTMGAGAMPKLESLILNPCAY 389 (478)
Q Consensus 319 ~-----~~~l~~l~~L~~L~L~~~~--~~~~~~~~~~~~~~~~L~~L~L~~~~~l~--~l~~~~~~~~~L~~L~l~~c~~ 389 (478)
. ...+..+++|+.|+++.|. +++..+... ...+++|+.|++++|. ++ .++.....+++|+.|++++|+.
T Consensus 423 p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~-~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l 500 (592)
T 3ogk_B 423 PLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI-GQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCCF 500 (592)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH-HHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCCC
T ss_pred hHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH-HHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCCC
Confidence 1 1225679999999998544 444433322 3458899999999864 54 3344456789999999999983
Q ss_pred CC-CCccccCCCCCCCEEEEecCc
Q 047959 390 LR-KLPEEQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 390 l~-~lp~~l~~l~~L~~L~l~~c~ 412 (478)
.. .++.....+++|+.|++++|.
T Consensus 501 ~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 501 SERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp BHHHHHHHHHHCSSCCEEEEESCB
T ss_pred cHHHHHHHHHhcCccCeeECcCCc
Confidence 21 244555679999999999998
No 82
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.74 E-value=6.4e-18 Score=163.38 Aligned_cols=240 Identities=15% Similarity=0.114 Sum_probs=124.6
Q ss_pred eEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcC-cccch-hhhccccCcEE-EeeC
Q 047959 137 RVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYI-DHSPE-DIWMMQKLMHL-NFGS 212 (478)
Q Consensus 137 ~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l-~~lp~-~i~~l~~L~~L-~l~~ 212 (478)
++++-+++.++++|..+. +++++|++++|.|+.+|. .+.++++|++|++++|.+ +.+|. .+.++++|+.+ .++.
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 345566666666666552 466677777777766664 356666677777766654 33443 23455555543 3333
Q ss_pred CCCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccC
Q 047959 213 ITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLS 292 (478)
Q Consensus 213 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p 292 (478)
|.+....|..+..+++|++|++.++. .....+.......++..+++.+++.+..+|
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~------------------------l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~ 145 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTG------------------------IKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEEC------------------------CSSCCCCTTCCBSSCEEEEEESCTTCCEEC
T ss_pred CcccccCchhhhhccccccccccccc------------------------cccCCchhhcccchhhhhhhcccccccccc
Confidence 33333333344445555555444443 111111122233344455554444555444
Q ss_pred ccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceeeC
Q 047959 293 RMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMG 372 (478)
Q Consensus 293 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~ 372 (478)
.. .+......++.|++++|.++.. +.......+|+.|++.+++.....+... +..+++|++|++++ +.++.+|.
T Consensus 146 ~~--~f~~~~~~l~~L~L~~N~i~~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~-f~~l~~L~~LdLs~-N~l~~lp~- 219 (350)
T 4ay9_X 146 RN--SFVGLSFESVILWLNKNGIQEI-HNSAFNGTQLDELNLSDNNNLEELPNDV-FHGASGPVILDISR-TRIHSLPS- 219 (350)
T ss_dssp TT--SSTTSBSSCEEEECCSSCCCEE-CTTSSTTEEEEEEECTTCTTCCCCCTTT-TTTEECCSEEECTT-SCCCCCCS-
T ss_pred cc--chhhcchhhhhhccccccccCC-ChhhccccchhHHhhccCCcccCCCHHH-hccCcccchhhcCC-CCcCccCh-
Confidence 31 2222123466666666665432 2222334556666665433333222222 45666677777766 35666654
Q ss_pred CCcccccceeEEecCCCCCCCccccCCCCCCCEEEEec
Q 047959 373 AGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHW 410 (478)
Q Consensus 373 ~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 410 (478)
+.+.+|+.|.+.+|..++.+|. +..+++|+.+++..
T Consensus 220 -~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 220 -YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp -SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred -hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 3466677777666766777764 66677777777653
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.73 E-value=1.1e-17 Score=157.05 Aligned_cols=176 Identities=19% Similarity=0.167 Sum_probs=152.3
Q ss_pred CeEeEEEecCCCCCcC-CccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeC
Q 047959 134 KHLRVLNLGSAVLDQY-PPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGS 212 (478)
Q Consensus 134 ~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~ 212 (478)
+.+++|++++|.++.+ +..+..+++|++|++++|.++.++.. +.+++|++|++++|.+..+|..+..+++|++|++++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~ 109 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF 109 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCS
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCC
Confidence 6799999999999855 45699999999999999999988765 789999999999999999999899999999999988
Q ss_pred CCCCCCCCCCCCCCCCCcEeCcccCC-CCC-ccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccc
Q 047959 213 ITLPAPPKNNSSPLKNLIFISALHPS-SCT-PDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQ 290 (478)
Q Consensus 213 ~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~ 290 (478)
|.+....+..+..+++|++|++.++. ... +..+..+++|+.|++++|. .....+..+..+++|+.|++++ +.++.
T Consensus 110 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~l~~~~~~~l~~L~~L~L~~-N~l~~ 186 (290)
T 1p9a_G 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN--LTELPAGLLNGLENLDTLLLQE-NSLYT 186 (290)
T ss_dssp SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC--CSCCCTTTTTTCTTCCEEECCS-SCCCC
T ss_pred CcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc--CCccCHHHhcCcCCCCEEECCC-CcCCc
Confidence 88776666779999999999999998 444 4457899999999999983 3333334567899999999998 89999
Q ss_pred cCccccccccCCCCceEEEEEeecCCC
Q 047959 291 LSRMILSEYKFPPSLTQLSLSNTELVE 317 (478)
Q Consensus 291 ~p~~~~~~~~~~~~L~~L~l~~~~~~~ 317 (478)
+|. .+.. .++|+.|++++|++..
T Consensus 187 ip~---~~~~-~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 187 IPK---GFFG-SHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCT---TTTT-TCCCSEEECCSCCBCC
T ss_pred cCh---hhcc-cccCCeEEeCCCCccC
Confidence 999 8888 8999999999998754
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.73 E-value=2.7e-18 Score=163.18 Aligned_cols=196 Identities=20% Similarity=0.192 Sum_probs=115.3
Q ss_pred CCCceEeecCCCCC-ccchhh--hCCCCCcEEeCCCCcCccc-c----hhhhccccCcEEEeeCCCCCCCCCCCCCCCCC
Q 047959 157 FYLKYLKLNIPSLK-CLPSLL--CTLLNLQTLEMPSSYIDHS-P----EDIWMMQKLMHLNFGSITLPAPPKNNSSPLKN 228 (478)
Q Consensus 157 ~~L~~L~l~~~~i~-~lp~~~--~~l~~L~~L~l~~~~l~~l-p----~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 228 (478)
++|++|++++|.+. ..|..+ ..+++|++|++++|.+... + ..+..+++|++|++++|.+....+..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 44666666666655 444444 5566666666666655431 1 22345666666666666655555555666666
Q ss_pred CcEeCcccCC-CC---C--ccccCCCCCCcEEEEEecCCcchhhHHH-hccCCCCCCEEEEEecCccccc-Ccccccccc
Q 047959 229 LIFISALHPS-SC---T--PDILGRLPNVQTLRISGDLSYYHSGVSK-SLCQLHKLECLKLVNEGKMRQL-SRMILSEYK 300 (478)
Q Consensus 229 L~~L~l~~~~-~~---~--~~~l~~l~~L~~L~l~~~~~~~~~~l~~-~l~~~~~L~~L~l~~~~~l~~~-p~~~~~~~~ 300 (478)
|++|++++|. .. . ...++.+++|++|++++|.-......+. .+..+++|++|++++ +.++.. |. .+..
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~-N~l~~~~p~---~~~~ 246 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSH-NSLRATVNP---SAPR 246 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTT-SCCCCCCCS---CCSS
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCC-CCCCccchh---hHHh
Confidence 6666666664 11 1 1123566777777777763111122222 245677888888876 666654 55 4444
Q ss_pred C--CCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecC
Q 047959 301 F--PPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSM 363 (478)
Q Consensus 301 ~--~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 363 (478)
. +++|++|++++|.++ ..+..+. ++|++|+|++|.+.+... ...+++|+.|+++++
T Consensus 247 ~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~----~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 247 CMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ----PDELPEVDNLTLDGN 304 (310)
T ss_dssp CCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC----TTSCCCCSCEECSST
T ss_pred ccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch----hhhCCCccEEECcCC
Confidence 1 268888888888776 3344443 688888888887765321 456788888888774
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=2.6e-19 Score=172.22 Aligned_cols=225 Identities=15% Similarity=0.162 Sum_probs=172.2
Q ss_pred CeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCC-c-cchhhhCCCCCcEEeCCCCcCc-ccchhhhccccCcEEEe
Q 047959 134 KHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLK-C-LPSLLCTLLNLQTLEMPSSYID-HSPEDIWMMQKLMHLNF 210 (478)
Q Consensus 134 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~-~-lp~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l 210 (478)
+.++.|+++++.++..+..+..+++|++|++++|.+. . +|..+..+++|++|++++|.+. ..|..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 4578899999998866666778899999999999887 3 7888889999999999999765 56777888999999999
Q ss_pred eCC-CCCC-CCCCCCCCCCCCcEeCcccC-C-C--CCccccCCCC-CCcEEEEEecC-CcchhhHHHhccCCCCCCEEEE
Q 047959 211 GSI-TLPA-PPKNNSSPLKNLIFISALHP-S-S--CTPDILGRLP-NVQTLRISGDL-SYYHSGVSKSLCQLHKLECLKL 282 (478)
Q Consensus 211 ~~~-~~~~-~~~~~~~~l~~L~~L~l~~~-~-~--~~~~~l~~l~-~L~~L~l~~~~-~~~~~~l~~~l~~~~~L~~L~l 282 (478)
++| .... .++..+..+++|++|++.+| . . ..+..+..++ +|++|++++|. ......++..+..+++|+.|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 777 3333 25555777889999999988 5 2 2466678899 99999999983 2333677788889999999999
Q ss_pred EecCccc-ccCccccccccCCCCceEEEEEeec-CCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCC-cccceeE
Q 047959 283 VNEGKMR-QLSRMILSEYKFPPSLTQLSLSNTE-LVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSF-PQLKILH 359 (478)
Q Consensus 283 ~~~~~l~-~~p~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~-~~L~~L~ 359 (478)
++|..++ ..+. .+.. +++|+.|++++|. +.......++.+++|+.|++++| +.... +..+ .+|+.|+
T Consensus 230 ~~~~~l~~~~~~---~l~~-l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~-----~~~l~~~l~~L~ 299 (336)
T 2ast_B 230 SDSVMLKNDCFQ---EFFQ-LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGT-----LQLLKEALPHLQ 299 (336)
T ss_dssp TTCTTCCGGGGG---GGGG-CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTC-----HHHHHHHSTTSE
T ss_pred CCCCcCCHHHHH---HHhC-CCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHH-----HHHHHhhCcceE
Confidence 9855354 4555 7788 8999999999995 43334446888999999999988 44433 2233 3577888
Q ss_pred EecCCCCCce
Q 047959 360 LKSMLWLEEW 369 (478)
Q Consensus 360 L~~~~~l~~l 369 (478)
+++ +.++..
T Consensus 300 l~~-n~l~~~ 308 (336)
T 2ast_B 300 INC-SHFTTI 308 (336)
T ss_dssp ESC-CCSCCT
T ss_pred Eec-ccCccc
Confidence 876 456533
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.73 E-value=1.9e-20 Score=183.84 Aligned_cols=85 Identities=12% Similarity=0.060 Sum_probs=56.1
Q ss_pred CCCCeEeEEEecCCCCC-----cCCccCCCCCCCceEeecCCCCC----ccchhh-------hCCCCCcEEeCCCCcCcc
Q 047959 131 KKFKHLRVLNLGSAVLD-----QYPPGLENLFYLKYLKLNIPSLK----CLPSLL-------CTLLNLQTLEMPSSYIDH 194 (478)
Q Consensus 131 ~~~~~L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~l~~~~i~----~lp~~~-------~~l~~L~~L~l~~~~l~~ 194 (478)
..+++|+.|+|++|.++ .++..+..+++|++|++++|.+. .+|..+ ..+++|++|++++|.+..
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 55667777777777765 23444667777777777776443 334333 567777777777776655
Q ss_pred -----cchhhhccccCcEEEeeCCCC
Q 047959 195 -----SPEDIWMMQKLMHLNFGSITL 215 (478)
Q Consensus 195 -----lp~~i~~l~~L~~L~l~~~~~ 215 (478)
+|..+..+++|++|++++|.+
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 566677777777777766644
No 87
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.72 E-value=2.5e-17 Score=159.18 Aligned_cols=218 Identities=14% Similarity=0.129 Sum_probs=157.5
Q ss_pred CeEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCC-ccch-hhhCCCCCcE-EeCCCCcCcccc-hhhhccccCcEE
Q 047959 134 KHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLK-CLPS-LLCTLLNLQT-LEMPSSYIDHSP-EDIWMMQKLMHL 208 (478)
Q Consensus 134 ~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~-~lp~-~~~~l~~L~~-L~l~~~~l~~lp-~~i~~l~~L~~L 208 (478)
++++.|+|++|.++.+|.. |.++++|++|++++|.+. .+|. .+.++++|++ +.+.++++..++ ..+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 5789999999999999875 899999999999999985 5664 4678888876 455566999985 557899999999
Q ss_pred EeeCCCCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecCCcchhhHH-HhccCC-CCCCEEEEEecC
Q 047959 209 NFGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVS-KSLCQL-HKLECLKLVNEG 286 (478)
Q Consensus 209 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~-~~l~~~-~~L~~L~l~~~~ 286 (478)
++++|.+....+..+....++..|++.++. ....++ ..+..+ ..++.|++++ +
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~------------------------~i~~l~~~~f~~~~~~l~~L~L~~-N 164 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNI------------------------NIHTIERNSFVGLSFESVILWLNK-N 164 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCT------------------------TCCEECTTSSTTSBSSCEEEECCS-S
T ss_pred cccccccccCCchhhcccchhhhhhhcccc------------------------ccccccccchhhcchhhhhhcccc-c
Confidence 998886654433334444444455443321 111111 122233 3577788876 7
Q ss_pred cccccCccccccccCCCCceEEEEEee-cCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCC
Q 047959 287 KMRQLSRMILSEYKFPPSLTQLSLSNT-ELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLW 365 (478)
Q Consensus 287 ~l~~~p~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 365 (478)
.++.+|. .... ..+|+.|.+.++ .++......++.+++|++|+|++|.++... ...+.+|+.|.+.++..
T Consensus 165 ~i~~i~~---~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp-----~~~~~~L~~L~~l~~~~ 235 (350)
T 4ay9_X 165 GIQEIHN---SAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP-----SYGLENLKKLRARSTYN 235 (350)
T ss_dssp CCCEECT---TSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC-----SSSCTTCCEEECTTCTT
T ss_pred cccCCCh---hhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC-----hhhhccchHhhhccCCC
Confidence 7888887 6666 678888888764 554444456788899999999988876543 45678888888888888
Q ss_pred CCceeeCCCcccccceeEEec
Q 047959 366 LEEWTMGAGAMPKLESLILNP 386 (478)
Q Consensus 366 l~~l~~~~~~~~~L~~L~l~~ 386 (478)
++.+|. ...+++|+.+++.+
T Consensus 236 l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 236 LKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp CCCCCC-TTTCCSCCEEECSC
T ss_pred cCcCCC-chhCcChhhCcCCC
Confidence 888884 67889999998864
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=3.6e-18 Score=155.95 Aligned_cols=215 Identities=15% Similarity=0.163 Sum_probs=133.0
Q ss_pred ceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccch-hhhccccCcEEEeeCCC-CCCCCCCCCCCCCCCcEeCcccC
Q 047959 160 KYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPE-DIWMMQKLMHLNFGSIT-LPAPPKNNSSPLKNLIFISALHP 237 (478)
Q Consensus 160 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~ 237 (478)
+.+.+....++.+|. +. .+|++|++++|.+..+|. .+..+++|++|++++|. +....+..+..+++|++|++.++
T Consensus 14 ~~~~v~c~~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~ 90 (239)
T 2xwt_C 14 EDFRVTCKDIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90 (239)
T ss_dssp STTEEEECSCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEE
T ss_pred CcceeEccCccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCC
Confidence 334444445778886 43 489999999998888876 57788899999997775 33222223444445555444431
Q ss_pred CCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCce---EEEEEee-
Q 047959 238 SSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLT---QLSLSNT- 313 (478)
Q Consensus 238 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~---~L~l~~~- 313 (478)
+ ......+..+..+++|+.|++++ +.++.+|. +.. +++|+ .|++++|
T Consensus 91 ---------------------n--~l~~i~~~~f~~l~~L~~L~l~~-n~l~~lp~----~~~-l~~L~~L~~L~l~~N~ 141 (239)
T 2xwt_C 91 ---------------------R--NLTYIDPDALKELPLLKFLGIFN-TGLKMFPD----LTK-VYSTDIFFILEITDNP 141 (239)
T ss_dssp ---------------------T--TCCEECTTSEECCTTCCEEEEEE-ECCCSCCC----CTT-CCBCCSEEEEEEESCT
T ss_pred ---------------------C--CeeEcCHHHhCCCCCCCEEeCCC-CCCccccc----ccc-ccccccccEEECCCCc
Confidence 3 11111223445566666666665 55555552 333 45555 7777777
Q ss_pred cCCCCCcCcccCCCCCC-eEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceeeC-CCcc-cccceeEEecCCCC
Q 047959 314 ELVEDPMPTLEELPHLE-VLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMG-AGAM-PKLESLILNPCAYL 390 (478)
Q Consensus 314 ~~~~~~~~~l~~l~~L~-~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~-~~~~-~~L~~L~l~~c~~l 390 (478)
.++......+..+++|+ .|++++|.+.. .+... +.. ++|+.|+++++..++.++.. +..+ ++|+.|++++|. +
T Consensus 142 ~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~~~-~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l 217 (239)
T 2xwt_C 142 YMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYA-FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-V 217 (239)
T ss_dssp TCCEECTTTTTTTBSSEEEEECCSCCCCE-ECTTT-TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-C
T ss_pred chhhcCcccccchhcceeEEEcCCCCCcc-cCHhh-cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-c
Confidence 66555555677777787 88887777652 22111 233 67888888875457766543 4566 888888888865 4
Q ss_pred CCCccccCCCCCCCEEEEecCc
Q 047959 391 RKLPEEQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 391 ~~lp~~l~~l~~L~~L~l~~c~ 412 (478)
+.+|.. .+++|+.|++.++.
T Consensus 218 ~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 218 TALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CCCCCT--TCTTCSEEECTTC-
T ss_pred ccCChh--HhccCceeeccCcc
Confidence 556653 67888888887765
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=4.6e-20 Score=181.09 Aligned_cols=252 Identities=17% Similarity=0.116 Sum_probs=173.1
Q ss_pred EeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCc-----cchhhhCCCCCcEEeCCCCcCc----ccchhh-------
Q 047959 136 LRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKC-----LPSLLCTLLNLQTLEMPSSYID----HSPEDI------- 199 (478)
Q Consensus 136 L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~l~----~lp~~i------- 199 (478)
|+...+....+..++..+..+++|++|++++|.+.. ++..+..+++|++|++++|.+. .+|.++
T Consensus 11 L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l 90 (386)
T 2ca6_A 11 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL 90 (386)
T ss_dssp CEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHH
Confidence 333333333344677777788889999999988772 3444668889999999887554 335444
Q ss_pred hccccCcEEEeeCCCCCC----CCCCCCCCCCCCcEeCcccCC--C----CCccccCCC---------CCCcEEEEEecC
Q 047959 200 WMMQKLMHLNFGSITLPA----PPKNNSSPLKNLIFISALHPS--S----CTPDILGRL---------PNVQTLRISGDL 260 (478)
Q Consensus 200 ~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~--~----~~~~~l~~l---------~~L~~L~l~~~~ 260 (478)
..+++|++|++++|.+.. .+|..+..+++|++|++.+|. . .++..+..+ ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 678899999998887665 355567778899999988887 1 222334344 889999998884
Q ss_pred C--cchhhHHHhccCCCCCCEEEEEecCccc------ccCccccccccCCCCceEEEEEeecCC----CCCcCcccCCCC
Q 047959 261 S--YYHSGVSKSLCQLHKLECLKLVNEGKMR------QLSRMILSEYKFPPSLTQLSLSNTELV----EDPMPTLEELPH 328 (478)
Q Consensus 261 ~--~~~~~l~~~l~~~~~L~~L~l~~~~~l~------~~p~~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~l~~l~~ 328 (478)
- .....+...+..+++|++|++++ +.++ -+|. .+.. +++|+.|+|++|.++ ...+..+..+++
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~-n~l~~~g~~~l~~~---~l~~-~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQ-NGIRPEGIEHLLLE---GLAY-CQELKVLDLQDNTFTHLGSSALAIALKSWPN 245 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCS-SCCCHHHHHHHHHT---TGGG-CTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcC-CCCCHhHHHHHHHH---Hhhc-CCCccEEECcCCCCCcHHHHHHHHHHccCCC
Confidence 1 12222335677888999999987 5665 3444 5666 889999999998874 334556778889
Q ss_pred CCeEEEeeCcccCceeEE--eCC--CCCcccceeEEecCCCCCc-----eeeCC-CcccccceeEEecCCCCCCC
Q 047959 329 LEVLKLKQNSYLERKLAC--VGC--SSFPQLKILHLKSMLWLEE-----WTMGA-GAMPKLESLILNPCAYLRKL 393 (478)
Q Consensus 329 L~~L~L~~~~~~~~~~~~--~~~--~~~~~L~~L~L~~~~~l~~-----l~~~~-~~~~~L~~L~l~~c~~l~~l 393 (478)
|+.|+|++|.+.+..... ..+ +.+++|++|+|++| .++. ++... ..+++|+.|++++|+.....
T Consensus 246 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred cCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 999999988876542110 002 34788999999885 4554 65555 45789999999998765544
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=3.4e-17 Score=153.94 Aligned_cols=171 Identities=19% Similarity=0.207 Sum_probs=108.8
Q ss_pred CCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEe
Q 047959 131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNF 210 (478)
Q Consensus 131 ~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 210 (478)
..+++|+.|++++|.++.++. +..+++|++|++++|.+..++. +..+++|++|++++|.+..+|. +..+++|++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred hhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence 456778888888888887764 7788888888888888887776 8888888888888888887765 788888888888
Q ss_pred eCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccc
Q 047959 211 GSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMR 289 (478)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~ 289 (478)
++|.+.. + ..+..+++|+.|++.++. ... ..++ .+++|+.|++++ +.++
T Consensus 120 ~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~--------------------------~l~~L~~L~L~~-N~l~ 169 (291)
T 1h6t_A 120 EHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLS--------------------------RLTKLDTLSLED-NQIS 169 (291)
T ss_dssp TTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC-GGGG--------------------------GCTTCSEEECCS-SCCC
T ss_pred CCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc-hhhc--------------------------cCCCCCEEEccC-Cccc
Confidence 7665443 2 234555555555555554 221 3344 444555555544 4444
Q ss_pred ccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccC
Q 047959 290 QLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLE 341 (478)
Q Consensus 290 ~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 341 (478)
.++ .+.. +++|+.|++++|.+++. +.+..+++|+.|++++|.+..
T Consensus 170 ~~~----~l~~-l~~L~~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 170 DIV----PLAG-LTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCG----GGTT-CTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEEEEEEC
T ss_pred cch----hhcC-CCccCEEECCCCcCCCC--hhhccCCCCCEEECcCCcccC
Confidence 443 2333 55555555555554331 235555555555555555443
No 91
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.70 E-value=5.4e-19 Score=183.53 Aligned_cols=165 Identities=16% Similarity=0.172 Sum_probs=105.2
Q ss_pred CCCCeeeec---C--------ccccCCCCeEeEEEecCCCCCc-----CCccCCCCCCCceEeecCCC--CC--ccchhh
Q 047959 117 KSDHLALIH---C--------ENFCKKFKHLRVLNLGSAVLDQ-----YPPGLENLFYLKYLKLNIPS--LK--CLPSLL 176 (478)
Q Consensus 117 ~~~~lr~l~---~--------~~~~~~~~~L~~L~L~~~~l~~-----lp~~~~~l~~L~~L~l~~~~--i~--~lp~~~ 176 (478)
.+++|++|+ . ..+...+++|++|++++|.++. ++.....+++|++|++++|. +. .++..+
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~ 207 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV 207 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence 467777772 1 2333578889999999888552 33334477789999998886 33 344444
Q ss_pred hCCCCCcEEeCCCC-cCcccchhhhccccCcEEEeeCCCCC------------------------------CCCCCCCCC
Q 047959 177 CTLLNLQTLEMPSS-YIDHSPEDIWMMQKLMHLNFGSITLP------------------------------APPKNNSSP 225 (478)
Q Consensus 177 ~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~~------------------------------~~~~~~~~~ 225 (478)
..+++|++|++++| .+..+|..+..+++|++|+++.+... ..++..+..
T Consensus 208 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~ 287 (594)
T 2p1m_B 208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV 287 (594)
T ss_dssp HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHH
T ss_pred HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHh
Confidence 56789999999988 66677777788888888876433210 011111224
Q ss_pred CCCCcEeCcccCC---CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEE
Q 047959 226 LKNLIFISALHPS---SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLV 283 (478)
Q Consensus 226 l~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~ 283 (478)
+++|++|++.+|. ......+..+++|++|+++++ .....+......+++|+.|++.
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVF 346 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEE
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEe
Confidence 5677788777775 112223567788888888876 3344444444457777777773
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.69 E-value=1.8e-16 Score=145.76 Aligned_cols=176 Identities=20% Similarity=0.198 Sum_probs=117.3
Q ss_pred eEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCcccch-hhhccccCcEEEeeC
Q 047959 135 HLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDHSPE-DIWMMQKLMHLNFGS 212 (478)
Q Consensus 135 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~ 212 (478)
..+.++++++.++.+|..+. .+++.|++++|.+..++. .+.++++|++|++++|.+..++. .+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 35678888888888887765 588888888888886554 57888888888888888877754 367888888888877
Q ss_pred CCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccccc
Q 047959 213 ITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQL 291 (478)
Q Consensus 213 ~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~ 291 (478)
|.+....+..+..+++|++|++.++. ...+. ..+..+++|+.|++++ +.++.+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------------------------~~~~~l~~L~~L~Ls~-N~l~~~ 146 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS-------------------------GVFDRLTKLKELRLNT-NQLQSI 146 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------------------------TTTTTCTTCCEEECCS-SCCCCC
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcCh-------------------------hHhccCCcccEEECcC-CcCCcc
Confidence 76665444556666666666666655 22222 2233445555555554 455545
Q ss_pred CccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccC
Q 047959 292 SRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLE 341 (478)
Q Consensus 292 p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 341 (478)
|.. .+.. +++|+.|++++|.+.......+..+++|+.|++++|.+..
T Consensus 147 ~~~--~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 147 PAG--AFDK-LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CTT--TTTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CHH--HcCc-CcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 431 3455 6677777777776665555566667777777777666644
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.69 E-value=1.6e-16 Score=146.01 Aligned_cols=176 Identities=18% Similarity=0.156 Sum_probs=130.2
Q ss_pred CCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccch-hhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcc
Q 047959 157 FYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPE-DIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISAL 235 (478)
Q Consensus 157 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 235 (478)
...+.++++++.++.+|..+. .+|++|++++|.+..++. .+.++++|++|++++|.+....+..+..+++|++|++.
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 356788888888888887665 588888888888877754 57788888888887776665555556666666666666
Q ss_pred cCCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeecC
Q 047959 236 HPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTEL 315 (478)
Q Consensus 236 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~ 315 (478)
++. .....+..+..+++|+.|++++ +.++.+|.. .+.. +++|+.|++++|.+
T Consensus 92 ~n~------------------------l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~--~~~~-l~~L~~L~Ls~N~l 143 (251)
T 3m19_A 92 NNQ------------------------LASLPLGVFDHLTQLDKLYLGG-NQLKSLPSG--VFDR-LTKLKELRLNTNQL 143 (251)
T ss_dssp TSC------------------------CCCCCTTTTTTCTTCCEEECCS-SCCCCCCTT--TTTT-CTTCCEEECCSSCC
T ss_pred CCc------------------------ccccChhHhcccCCCCEEEcCC-CcCCCcChh--Hhcc-CCcccEEECcCCcC
Confidence 554 1111223345667777777776 677777751 3567 89999999999999
Q ss_pred CCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCC
Q 047959 316 VEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSML 364 (478)
Q Consensus 316 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 364 (478)
++.....++.+++|++|+|++|.+....... +..+++|+.|++++++
T Consensus 144 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 144 QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA--FDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSCC
T ss_pred CccCHHHcCcCcCCCEEECCCCcCCccCHHH--HhCCCCCCEEEeeCCc
Confidence 8776668999999999999999987654322 6788999999999853
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.69 E-value=2.4e-17 Score=156.62 Aligned_cols=102 Identities=13% Similarity=0.125 Sum_probs=49.0
Q ss_pred CCceEeecCCCCC--ccch--hhhCCCCCcEEeCCCCcCc-ccchhh--hccccCcEEEeeCCCCCCCCC----CCCCCC
Q 047959 158 YLKYLKLNIPSLK--CLPS--LLCTLLNLQTLEMPSSYID-HSPEDI--WMMQKLMHLNFGSITLPAPPK----NNSSPL 226 (478)
Q Consensus 158 ~L~~L~l~~~~i~--~lp~--~~~~l~~L~~L~l~~~~l~-~lp~~i--~~l~~L~~L~l~~~~~~~~~~----~~~~~l 226 (478)
.++.|.+.++.+. .+.. ....+.+|++|++++|.+. ..|..+ ..+++|++|++++|.+....+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 3555666655544 1111 1122345666666666543 334444 556666666666555443322 112344
Q ss_pred CCCcEeCcccCC--CCCccccCCCCCCcEEEEEec
Q 047959 227 KNLIFISALHPS--SCTPDILGRLPNVQTLRISGD 259 (478)
Q Consensus 227 ~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~ 259 (478)
++|++|++.++. ...+..++.+++|++|++++|
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 179 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDN 179 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCC
Confidence 555555555554 222334445555555555554
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.68 E-value=1e-18 Score=169.92 Aligned_cols=38 Identities=21% Similarity=0.104 Sum_probs=16.5
Q ss_pred CCeEeEEEecCCCCCcCC-----ccCCCCC-CCceEeecCCCCC
Q 047959 133 FKHLRVLNLGSAVLDQYP-----PGLENLF-YLKYLKLNIPSLK 170 (478)
Q Consensus 133 ~~~L~~L~L~~~~l~~lp-----~~~~~l~-~L~~L~l~~~~i~ 170 (478)
.++|++|++++|.++..+ ..+..++ +|++|++++|.+.
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 64 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG 64 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGG
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCC
Confidence 333444444444444332 2233444 4444444444444
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.67 E-value=9.6e-17 Score=165.28 Aligned_cols=176 Identities=20% Similarity=0.199 Sum_probs=117.5
Q ss_pred CCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEe
Q 047959 131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNF 210 (478)
Q Consensus 131 ~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 210 (478)
..++.|+.|++++|.+..++. +..+++|+.|+|++|.+..+|. +..+++|+.|+|++|.+..+| .+..+++|++|++
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTT-GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEEC
T ss_pred hcCCCCCEEECcCCCCCCChH-HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEe
Confidence 345667777888777776663 7777788888888887777665 777778888888888777766 4777778888888
Q ss_pred eCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccc
Q 047959 211 GSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMR 289 (478)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~ 289 (478)
++|.+.. + ..+..+++|+.|++.+|. ... ..+..+++|+.|++++|. ..+..+ +..+++|+.|++++ +.++
T Consensus 117 s~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~--l~~~~~--l~~l~~L~~L~Ls~-N~i~ 188 (605)
T 1m9s_A 117 EHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ--ISDIVP--LAGLTKLQNLYLSK-NHIS 188 (605)
T ss_dssp TTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC--CCCCGG--GTTCTTCCEEECCS-SCCC
T ss_pred cCCCCCC-C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc--CCCchh--hccCCCCCEEECcC-CCCC
Confidence 6665543 2 346667777777777766 322 556677777777777662 222222 56667777777776 5666
Q ss_pred ccCccccccccCCCCceEEEEEeecCCCCCcCc
Q 047959 290 QLSRMILSEYKFPPSLTQLSLSNTELVEDPMPT 322 (478)
Q Consensus 290 ~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 322 (478)
.+| .+.. +++|+.|+|++|.+.......
T Consensus 189 ~l~----~l~~-l~~L~~L~L~~N~l~~~p~~~ 216 (605)
T 1m9s_A 189 DLR----ALAG-LKNLDVLELFSQECLNKPINH 216 (605)
T ss_dssp BCG----GGTT-CTTCSEEECCSEEEECCCCCC
T ss_pred CCh----HHcc-CCCCCEEEccCCcCcCCcccc
Confidence 655 4555 677777777777665544333
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.66 E-value=2.3e-16 Score=148.18 Aligned_cols=170 Identities=19% Similarity=0.221 Sum_probs=123.2
Q ss_pred CCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEe
Q 047959 153 LENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFI 232 (478)
Q Consensus 153 ~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 232 (478)
+..+++|++|++++|.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.+.. ++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~------------ 106 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-LS------------ 106 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-GG------------
T ss_pred hhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-Ch------------
Confidence 346677888888888777775 47777888888888887777766 7777788888876664332 11
Q ss_pred CcccCCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEe
Q 047959 233 SALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSN 312 (478)
Q Consensus 233 ~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~ 312 (478)
.+..+++|+.|++++|. ... + ..+..+++|+.|++++ +.++.++ .+.. +++|+.|++++
T Consensus 107 -----------~l~~l~~L~~L~L~~n~--i~~-~-~~l~~l~~L~~L~l~~-n~l~~~~----~l~~-l~~L~~L~L~~ 165 (291)
T 1h6t_A 107 -----------SLKDLKKLKSLSLEHNG--ISD-I-NGLVHLPQLESLYLGN-NKITDIT----VLSR-LTKLDTLSLED 165 (291)
T ss_dssp -----------GGTTCTTCCEEECTTSC--CCC-C-GGGGGCTTCCEEECCS-SCCCCCG----GGGG-CTTCSEEECCS
T ss_pred -----------hhccCCCCCEEECCCCc--CCC-C-hhhcCCCCCCEEEccC-CcCCcch----hhcc-CCCCCEEEccC
Confidence 24455555555555552 111 1 3456777888888886 6777674 6777 99999999999
Q ss_pred ecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCC
Q 047959 313 TELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSML 364 (478)
Q Consensus 313 ~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 364 (478)
|.+.+..+ +..+++|+.|++++|.+.+.. . +..+++|+.|++++++
T Consensus 166 N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~---~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 166 NQISDIVP--LAGLTKLQNLYLSKNHISDLR---A-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp SCCCCCGG--GTTCTTCCEEECCSSCCCBCG---G-GTTCTTCSEEEEEEEE
T ss_pred Cccccchh--hcCCCccCEEECCCCcCCCCh---h-hccCCCCCEEECcCCc
Confidence 99866433 899999999999999887642 2 6789999999999853
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.66 E-value=1.2e-18 Score=169.41 Aligned_cols=223 Identities=13% Similarity=0.115 Sum_probs=126.7
Q ss_pred EEEecCCCCC-cCCccCCCCCCCceEeecCCCCCccc-----hhhhCCC-CCcEEeCCCCcCccc-chhhhcc-----cc
Q 047959 138 VLNLGSAVLD-QYPPGLENLFYLKYLKLNIPSLKCLP-----SLLCTLL-NLQTLEMPSSYIDHS-PEDIWMM-----QK 204 (478)
Q Consensus 138 ~L~L~~~~l~-~lp~~~~~l~~L~~L~l~~~~i~~lp-----~~~~~l~-~L~~L~l~~~~l~~l-p~~i~~l-----~~ 204 (478)
.++++++.++ .+|..+....+|++|++++|.+...+ ..+..++ +|++|++++|.+... +..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 3678888887 45555556667999999999988665 5677888 899999999988665 4556554 88
Q ss_pred CcEEEeeCCCCCCCCCCC----CCCC-CCCcEeCcccCC--CCCc----cccCC-CCCCcEEEEEecC--CcchhhHHHh
Q 047959 205 LMHLNFGSITLPAPPKNN----SSPL-KNLIFISALHPS--SCTP----DILGR-LPNVQTLRISGDL--SYYHSGVSKS 270 (478)
Q Consensus 205 L~~L~l~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~--~~~~----~~l~~-l~~L~~L~l~~~~--~~~~~~l~~~ 270 (478)
|++|++++|.+....+.. +..+ ++|++|++.+|. ...+ ..+.. .++|++|++++|. ......++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999887665444332 2233 677777777766 1111 12333 2466666666663 1122344444
Q ss_pred ccCCC-CCCEEEEEecCcccccCcc-c-cccccCC-CCceEEEEEeecCCCCCcC----cccC-CCCCCeEEEeeCcccC
Q 047959 271 LCQLH-KLECLKLVNEGKMRQLSRM-I-LSEYKFP-PSLTQLSLSNTELVEDPMP----TLEE-LPHLEVLKLKQNSYLE 341 (478)
Q Consensus 271 l~~~~-~L~~L~l~~~~~l~~~p~~-~-~~~~~~~-~~L~~L~l~~~~~~~~~~~----~l~~-l~~L~~L~L~~~~~~~ 341 (478)
+..++ +|++|++++ +.++..+.. + ..+.. . ++|+.|++++|.+...... .+.. .++|++|+|++|.+.+
T Consensus 162 l~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~l~~-~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 162 LAAIPANVNSLNLRG-NNLASKNCAELAKFLAS-IPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHTSCTTCCEEECTT-SCGGGSCHHHHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HhcCCccccEeeecC-CCCchhhHHHHHHHHHh-CCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 44444 666666665 444322210 0 01222 3 3666666666665443222 2222 2356666666665544
Q ss_pred cee---EEeCCCCCcccceeEEecC
Q 047959 342 RKL---ACVGCSSFPQLKILHLKSM 363 (478)
Q Consensus 342 ~~~---~~~~~~~~~~L~~L~L~~~ 363 (478)
... ... ...+++|++|++++|
T Consensus 240 ~~~~~l~~~-~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 240 PSLENLKLL-KDSLKHLQTVYLDYD 263 (362)
T ss_dssp CCHHHHHHT-TTTTTTCSEEEEEHH
T ss_pred HHHHHHHHH-HhcCCCccEEEeccC
Confidence 321 111 244555555555554
No 99
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.65 E-value=4.1e-19 Score=184.43 Aligned_cols=276 Identities=18% Similarity=0.101 Sum_probs=160.2
Q ss_pred CCCCeEeEEEecCCC-CC--cCCccCCCCCCCceEeecCCCCCc-----cchhhhCCCCCcEEeCCCCc--C--cccchh
Q 047959 131 KKFKHLRVLNLGSAV-LD--QYPPGLENLFYLKYLKLNIPSLKC-----LPSLLCTLLNLQTLEMPSSY--I--DHSPED 198 (478)
Q Consensus 131 ~~~~~L~~L~L~~~~-l~--~lp~~~~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~--l--~~lp~~ 198 (478)
..+++|++|++++|. ++ .++..+.++++|++|++++|.+.. ++.....+++|++|++++|. + ..++..
T Consensus 127 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l 206 (594)
T 2p1m_B 127 KSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL 206 (594)
T ss_dssp HHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHH
T ss_pred HhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHH
Confidence 367788888888884 54 244445577888888888877552 33333466788888888875 2 122233
Q ss_pred hhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccC-------------------------------C-CCCccccC
Q 047959 199 IWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHP-------------------------------S-SCTPDILG 246 (478)
Q Consensus 199 i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-------------------------------~-~~~~~~l~ 246 (478)
+..+++|++|++++|.....++..+..+++|+.|.+..+ . ...+..+.
T Consensus 207 ~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~ 286 (594)
T 2p1m_B 207 VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYS 286 (594)
T ss_dssp HHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHH
T ss_pred HHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHH
Confidence 345788888888665222223334445556666653322 1 12223334
Q ss_pred CCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEee---------cCCC
Q 047959 247 RLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNT---------ELVE 317 (478)
Q Consensus 247 ~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~---------~~~~ 317 (478)
.+++|++|++++|. .....+...+..+++|+.|+++++..-..++. .... +++|+.|++.+| .+++
T Consensus 287 ~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~---l~~~-~~~L~~L~L~~~~~~g~~~~~~l~~ 361 (594)
T 2p1m_B 287 VCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV---LAST-CKDLRELRVFPSEPFVMEPNVALTE 361 (594)
T ss_dssp HHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH---HHHH-CTTCCEEEEECSCTTCSSCSSCCCH
T ss_pred hhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHH---HHHh-CCCCCEEEEecCcccccccCCCCCH
Confidence 67889999999885 33444555677889999999987421113332 3334 678888888543 2222
Q ss_pred CCcCcc-cCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEe-----cCCCCCceee--------------------
Q 047959 318 DPMPTL-EELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLK-----SMLWLEEWTM-------------------- 371 (478)
Q Consensus 318 ~~~~~l-~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~-----~~~~l~~l~~-------------------- 371 (478)
.....+ ..+++|+.|.+..+.+++..+... ...+++|+.|++. +|+.++..|.
T Consensus 362 ~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l-~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~ 440 (594)
T 2p1m_B 362 QGLVSVSMGCPKLESVLYFCRQMTNAALITI-ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS 440 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEEESCCCHHHHHHH-HHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHhchhHHHHHHhcCCcCHHHHHHH-HhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeec
Confidence 111222 236777777666555554332221 1245667777776 3344442111
Q ss_pred ---------CCC-cccccceeEEecCCCCCCCcccc-CCCCCCCEEEEecCc
Q 047959 372 ---------GAG-AMPKLESLILNPCAYLRKLPEEQ-WCIKSLCKLELHWPQ 412 (478)
Q Consensus 372 ---------~~~-~~~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c~ 412 (478)
... .+++|+.|++++|......+..+ .++++|+.|++++|+
T Consensus 441 ~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~ 492 (594)
T 2p1m_B 441 GLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492 (594)
T ss_dssp SSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS
T ss_pred CcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC
Confidence 001 26778888887776322222222 568899999999998
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.65 E-value=2.7e-16 Score=161.97 Aligned_cols=192 Identities=19% Similarity=0.201 Sum_probs=155.3
Q ss_pred eEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCC
Q 047959 135 HLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSIT 214 (478)
Q Consensus 135 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 214 (478)
.+..+.+..+.+..++. +..+.+|+.|++++|.+..+| .+..+++|+.|+|++|.+..+|. +..+++|++|++++|.
T Consensus 22 ~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK 98 (605)
T ss_dssp HHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC
T ss_pred HHHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC
Confidence 34445566666654433 567889999999999999887 68999999999999999999987 8999999999998886
Q ss_pred CCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCcc
Q 047959 215 LPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRM 294 (478)
Q Consensus 215 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~ 294 (478)
+.. + +.+..+++|+.|++.+|.-..+..+..+++|+.|++++|. ... + ..+..+++|+.|++++ +.+..++
T Consensus 99 l~~-l-~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~--l~~-l-~~l~~l~~L~~L~Ls~-N~l~~~~-- 169 (605)
T 1m9s_A 99 IKD-L-SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNK--ITD-I-TVLSRLTKLDTLSLED-NQISDIV-- 169 (605)
T ss_dssp CCC-C-TTSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSC--CCC-C-GGGGSCTTCSEEECCS-SCCCCCG--
T ss_pred CCC-C-hhhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCc--cCC-c-hhhcccCCCCEEECcC-CcCCCch--
Confidence 653 3 3789999999999999982234568899999999999984 322 2 5678899999999997 7777766
Q ss_pred ccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCce
Q 047959 295 ILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERK 343 (478)
Q Consensus 295 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 343 (478)
.+.. +++|+.|+|++|.+.+. +.+..+++|+.|+|++|.+....
T Consensus 170 --~l~~-l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 170 --PLAG-LTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp --GGTT-CTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred --hhcc-CCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence 3566 89999999999988653 57889999999999988876654
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.64 E-value=6.9e-16 Score=157.26 Aligned_cols=179 Identities=18% Similarity=0.202 Sum_probs=140.8
Q ss_pred eEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCC
Q 047959 135 HLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSIT 214 (478)
Q Consensus 135 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 214 (478)
+|+.|++++|.++.+|..+. ++|++|++++|.++.+| ..+++|++|++++|.+..+|. +.+ +|++|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence 68899999999998988764 78999999999999998 567899999999999988988 655 99999998887
Q ss_pred CCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCc
Q 047959 215 LPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSR 293 (478)
Q Consensus 215 ~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~ 293 (478)
+.. +|. .+++|+.|++.+|. ..++. .+++|+.|++++|. .. .++. +. ++|+.|++++ +.++.+|.
T Consensus 132 l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~--L~-~lp~-l~--~~L~~L~Ls~-N~L~~lp~ 197 (571)
T 3cvr_A 132 LTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ--LT-FLPE-LP--ESLEALDVST-NLLESLPA 197 (571)
T ss_dssp CSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC--CS-CCCC-CC--TTCCEEECCS-SCCSSCCC
T ss_pred CCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC--CC-Ccch-hh--CCCCEEECcC-CCCCchhh
Confidence 665 665 67899999999888 54554 57889999999883 22 2444 43 8899999987 78887774
Q ss_pred cccccccCCCCc-------eEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCce
Q 047959 294 MILSEYKFPPSL-------TQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERK 343 (478)
Q Consensus 294 ~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 343 (478)
+ ..+| +.|++++|.++. .+..+..+++|+.|+|++|.+++..
T Consensus 198 ----~---~~~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 198 ----V---PVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp ----C---C--------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred ----H---HHhhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 1 2355 889999888764 5556677888888888888877654
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.63 E-value=1.4e-15 Score=134.35 Aligned_cols=154 Identities=17% Similarity=0.193 Sum_probs=89.7
Q ss_pred CCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCc
Q 047959 155 NLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISA 234 (478)
Q Consensus 155 ~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 234 (478)
.+++|++|++++|.+..+| .+..+++|++|++++|.+..++ .+..+++|++|++++|.+....+..
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~------------ 107 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPN------------ 107 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCC------------
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChh------------
Confidence 4455555566555555555 4555556666666655554443 3555666666666555443333333
Q ss_pred ccCCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeec
Q 047959 235 LHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTE 314 (478)
Q Consensus 235 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~ 314 (478)
++.+++|+.|++++| ......+..+..+++|+.|+++++..++.+| .+.. +++|+.|++++|.
T Consensus 108 ----------l~~l~~L~~L~Ls~n--~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~----~l~~-l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 108 ----------LSGLTSLTLLDISHS--AHDDSILTKINTLPKVNSIDLSYNGAITDIM----PLKT-LPELKSLNIQFDG 170 (197)
T ss_dssp ----------CTTCTTCCEEECCSS--BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG----GGGG-CSSCCEEECTTBC
T ss_pred ----------hcCCCCCCEEEecCC--ccCcHhHHHHhhCCCCCEEEccCCCCccccH----hhcC-CCCCCEEECCCCC
Confidence 344455555555555 3444445566667777777777633366666 4666 7888888888887
Q ss_pred CCCCCcCcccCCCCCCeEEEeeCcccC
Q 047959 315 LVEDPMPTLEELPHLEVLKLKQNSYLE 341 (478)
Q Consensus 315 ~~~~~~~~l~~l~~L~~L~L~~~~~~~ 341 (478)
+++ .+.+..+++|+.|++++|.+.+
T Consensus 171 i~~--~~~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 171 VHD--YRGIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCC--CTTGGGCSSCCEEEECBC----
T ss_pred CcC--hHHhccCCCCCEEEeeCcccCC
Confidence 754 2367778888888888777643
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.62 E-value=1.5e-15 Score=135.34 Aligned_cols=121 Identities=21% Similarity=0.287 Sum_probs=74.8
Q ss_pred eEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchh-hhCCCCCcEEeCCCCcCcccchh-hhccccCcEEEeeCCC
Q 047959 137 RVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSL-LCTLLNLQTLEMPSSYIDHSPED-IWMMQKLMHLNFGSIT 214 (478)
Q Consensus 137 ~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 214 (478)
+.++.+++.++.+|..+ .++|++|++++|.++.+|.. +..+++|++|++++|.+..+|.. +..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 35666666677677554 34777777777777766654 56777777777777777777654 4667777777776665
Q ss_pred CCCCCCCCCCCCCCCcEeCcccCC-CCCc-cccCCCCCCcEEEEEec
Q 047959 215 LPAPPKNNSSPLKNLIFISALHPS-SCTP-DILGRLPNVQTLRISGD 259 (478)
Q Consensus 215 ~~~~~~~~~~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~ 259 (478)
+....+..+..+++|++|++.++. ...+ ..+..+++|+.|++++|
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN 134 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC
Confidence 554333345666666666666554 2222 22444555555555544
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.60 E-value=8.8e-16 Score=141.98 Aligned_cols=171 Identities=17% Similarity=0.177 Sum_probs=112.1
Q ss_pred CCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEee
Q 047959 132 KFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFG 211 (478)
Q Consensus 132 ~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 211 (478)
.+..+..++++++.++.++ .+..+++|++|++++|.+..+| .+..+++|++|++++|.+..+|. +..+++|++|+++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 4555667777777777666 4677788888888888888777 67778888888888888888776 7788888888887
Q ss_pred CCCCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccccc
Q 047959 212 SITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQL 291 (478)
Q Consensus 212 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~ 291 (478)
+|.+.. +|.. .. ++|+.|++.+|. ... + ..+..+++|+.|++++ +.++.+
T Consensus 94 ~N~l~~-l~~~-~~-~~L~~L~L~~N~------------------------l~~-~-~~l~~l~~L~~L~Ls~-N~i~~~ 143 (263)
T 1xeu_A 94 RNRLKN-LNGI-PS-ACLSRLFLDNNE------------------------LRD-T-DSLIHLKNLEILSIRN-NKLKSI 143 (263)
T ss_dssp SSCCSC-CTTC-CC-SSCCEEECCSSC------------------------CSB-S-GGGTTCTTCCEEECTT-SCCCBC
T ss_pred CCccCC-cCcc-cc-CcccEEEccCCc------------------------cCC-C-hhhcCcccccEEECCC-CcCCCC
Confidence 665433 3221 11 455555544443 111 1 1345556666666655 555555
Q ss_pred CccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCc
Q 047959 292 SRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLER 342 (478)
Q Consensus 292 p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 342 (478)
| .+.. +++|+.|++++|.+.+. ..+..+++|+.|++++|.+...
T Consensus 144 ~----~l~~-l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 144 V----MLGF-LSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp G----GGGG-CTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h----HHcc-CCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 4 4555 67777777777776554 5566777777777777766554
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.59 E-value=7.7e-16 Score=142.37 Aligned_cols=123 Identities=20% Similarity=0.232 Sum_probs=95.8
Q ss_pred cCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEE
Q 047959 130 CKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLN 209 (478)
Q Consensus 130 ~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 209 (478)
+..+++|++|++++|.++.++ .+..+++|++|++++|.+..+|. +..+++|++|++++|.+..+|... . ++|++|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~-~-~~L~~L~ 112 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIP-S-ACLSRLF 112 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCC-C-SSCCEEE
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCccc-c-CcccEEE
Confidence 367889999999999999888 68899999999999999999887 999999999999999999988643 3 9999999
Q ss_pred eeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEec
Q 047959 210 FGSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGD 259 (478)
Q Consensus 210 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~ 259 (478)
+++|.+.. ++ .+..+++|+.|++.++. ... ..++.+++|+.|++++|
T Consensus 113 L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 113 LDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGN 160 (263)
T ss_dssp CCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTS
T ss_pred ccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCC
Confidence 98886543 22 46666777777766665 222 24445555555555554
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.57 E-value=1.2e-15 Score=134.70 Aligned_cols=152 Identities=15% Similarity=0.144 Sum_probs=106.9
Q ss_pred CCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcc-cchhhhccccCcEEE
Q 047959 131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDH-SPEDIWMMQKLMHLN 209 (478)
Q Consensus 131 ~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~ 209 (478)
..+++|+.|++++|.++.+| .+..+++|++|++++|.+..++ .+..+++|++|++++|.+.. .|..+..+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 55678999999999999888 6889999999999999887765 78889999999999998865 577788999999999
Q ss_pred eeCCCCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccc
Q 047959 210 FGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMR 289 (478)
Q Consensus 210 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~ 289 (478)
+++|.+....|..+..+++|++|++.+|. ....++ .+..+++|+.|++++ +.++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~------------------------~i~~~~-~l~~l~~L~~L~l~~-n~i~ 172 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNG------------------------AITDIM-PLKTLPELKSLNIQF-DGVH 172 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCT------------------------BCCCCG-GGGGCSSCCEEECTT-BCCC
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCC------------------------CccccH-hhcCCCCCCEEECCC-CCCc
Confidence 98876655445455555555555555543 111112 344555555555554 4455
Q ss_pred ccCccccccccCCCCceEEEEEeecC
Q 047959 290 QLSRMILSEYKFPPSLTQLSLSNTEL 315 (478)
Q Consensus 290 ~~p~~~~~~~~~~~~L~~L~l~~~~~ 315 (478)
.++ .+.. +++|+.|++++|++
T Consensus 173 ~~~----~l~~-l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 173 DYR----GIED-FPKLNQLYAFSQTI 193 (197)
T ss_dssp CCT----TGGG-CSSCCEEEECBC--
T ss_pred ChH----Hhcc-CCCCCEEEeeCccc
Confidence 544 3455 66677777776664
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.55 E-value=3.3e-15 Score=152.26 Aligned_cols=167 Identities=17% Similarity=0.220 Sum_probs=139.2
Q ss_pred CCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeC
Q 047959 133 FKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGS 212 (478)
Q Consensus 133 ~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~ 212 (478)
+++|+.|++++|.++.+| ..+++|++|++++|.++.+|. +.+ +|++|++++|.+..+|. .+++|++|++++
T Consensus 79 ~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 79 PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADN 149 (571)
T ss_dssp CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCS
T ss_pred cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCC
Confidence 367999999999999998 457899999999999999998 655 99999999999999988 789999999988
Q ss_pred CCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCC-------CEEEEEe
Q 047959 213 ITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKL-------ECLKLVN 284 (478)
Q Consensus 213 ~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L-------~~L~l~~ 284 (478)
|.+.. +|. .+++|++|++.+|. ..++. +. ++|+.|++++|. .. .++. +.. +| +.|++++
T Consensus 150 N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~--L~-~lp~-~~~--~L~~~~~~L~~L~Ls~ 216 (571)
T 3cvr_A 150 NQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL--LE-SLPA-VPV--RNHHSEETEIFFRCRE 216 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC--CS-SCCC-CC----------CCEEEECCS
T ss_pred CccCc-CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC--CC-chhh-HHH--hhhcccccceEEecCC
Confidence 87664 665 57899999999998 55666 65 899999999984 22 4444 333 66 9999998
Q ss_pred cCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCC
Q 047959 285 EGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEEL 326 (478)
Q Consensus 285 ~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 326 (478)
+.++.+|. .+.. +++|+.|++++|.+++..+..+..+
T Consensus 217 -N~l~~lp~---~l~~-l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 217 -NRITHIPE---NILS-LDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp -SCCCCCCG---GGGG-SCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred -CcceecCH---HHhc-CCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 89999999 8999 9999999999999987666665544
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.54 E-value=1.6e-14 Score=128.56 Aligned_cols=180 Identities=17% Similarity=0.199 Sum_probs=110.5
Q ss_pred CceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchh-hhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccC
Q 047959 159 LKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPED-IWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHP 237 (478)
Q Consensus 159 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 237 (478)
-+.++.++++++.+|..+ .++|++|++++|.+..+|.. +..+++|++|++++|.+....+..+..+++|++|++.++
T Consensus 9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 356777888888888655 46899999999988888754 578889999999777665433334556666666666555
Q ss_pred C-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCC
Q 047959 238 S-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELV 316 (478)
Q Consensus 238 ~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~ 316 (478)
. ...+ +..+..+++|+.|++++ +.++.+|.. .+.. +++|+.|++++|.++
T Consensus 87 ~l~~~~-------------------------~~~~~~l~~L~~L~L~~-N~l~~~~~~--~~~~-l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 87 QLQSLP-------------------------NGVFDKLTQLKELALNT-NQLQSLPDG--VFDK-LTQLKDLRLYQNQLK 137 (208)
T ss_dssp CCCCCC-------------------------TTTTTTCTTCCEEECCS-SCCCCCCTT--TTTT-CTTCCEEECCSSCCS
T ss_pred cCCccC-------------------------HhHhcCccCCCEEEcCC-CcCcccCHh--Hhcc-CCcCCEEECCCCccc
Confidence 4 2221 12234445555555554 445545430 2455 667777777777666
Q ss_pred CCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceeeCCCcccc
Q 047959 317 EDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPK 378 (478)
Q Consensus 317 ~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~ 378 (478)
+.....+..+++|+.|++++|.+ ...+++|+.|.++.+..-..+|...+.++.
T Consensus 138 ~~~~~~~~~l~~L~~L~l~~N~~---------~~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 138 SVPDGVFDRLTSLQYIWLHDNPW---------DCTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSCCB---------CCCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred eeCHHHhccCCCccEEEecCCCe---------ecCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 55444566677777777776644 234566666666664333355555544443
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.54 E-value=3.4e-14 Score=127.63 Aligned_cols=100 Identities=15% Similarity=0.232 Sum_probs=60.2
Q ss_pred eEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCccc-chhhhccccCcEEEeeCCC
Q 047959 137 RVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDHS-PEDIWMMQKLMHLNFGSIT 214 (478)
Q Consensus 137 ~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~ 214 (478)
+.++.+++.++.+|..+. ++|+.|++++|.+..+|. .+..+++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 456666666666666543 467777777777765554 466667777777777766665 4556666777777776665
Q ss_pred CCCCCCCCCCCCCCCcEeCcccCC
Q 047959 215 LPAPPKNNSSPLKNLIFISALHPS 238 (478)
Q Consensus 215 ~~~~~~~~~~~l~~L~~L~l~~~~ 238 (478)
+....+..+..+++|++|++.++.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~ 115 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANK 115 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCHhHccCCCCCCEEECCCCC
Confidence 443222234455555555555444
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.52 E-value=2.8e-14 Score=128.11 Aligned_cols=150 Identities=15% Similarity=0.150 Sum_probs=94.4
Q ss_pred eEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccch--hhhCCCCCcEEeCCCCcCcccch-hhhccccCcEEEeeCC
Q 047959 137 RVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPS--LLCTLLNLQTLEMPSSYIDHSPE-DIWMMQKLMHLNFGSI 213 (478)
Q Consensus 137 ~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~ 213 (478)
+.++++++.++.+|..+.. .+++|++++|.++.++. .+..+++|++|++++|.+..++. .+..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~~--~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCCT--TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCCC--CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 4788888888877776543 56788888888886632 36778888888888888777764 5777888888888777
Q ss_pred CCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccccc-C
Q 047959 214 TLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQL-S 292 (478)
Q Consensus 214 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~-p 292 (478)
.+....+..+..+++|++|++.++. .....+..+..+++|+.|++++ +.++.+ |
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~------------------------l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~ 146 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNR------------------------ITCVGNDSFIGLSSVRLLSLYD-NQITTVAP 146 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSC------------------------CCCBCTTSSTTCTTCSEEECTT-SCCCCBCT
T ss_pred ccCccCHhHhcCCcCCCEEECCCCc------------------------CCeECHhHcCCCccCCEEECCC-CcCCEECH
Confidence 6654444445566666666655554 1111223333444455555544 444444 3
Q ss_pred ccccccccCCCCceEEEEEeecCCC
Q 047959 293 RMILSEYKFPPSLTQLSLSNTELVE 317 (478)
Q Consensus 293 ~~~~~~~~~~~~L~~L~l~~~~~~~ 317 (478)
. .+.. +++|+.|++++|.+..
T Consensus 147 ~---~~~~-l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 147 G---AFDT-LHSLSTLNLLANPFNC 167 (220)
T ss_dssp T---TTTT-CTTCCEEECCSCCEEC
T ss_pred H---HhcC-CCCCCEEEecCcCCcC
Confidence 4 4555 6666666666666543
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.52 E-value=5.9e-14 Score=126.86 Aligned_cols=149 Identities=19% Similarity=0.213 Sum_probs=94.6
Q ss_pred eEEEecCCCCCcCCccCCCCCCCceEeecCCCCCcc-chhhhCCCCCcEEeCCCCcCcccchh-hhccccCcEEEeeCCC
Q 047959 137 RVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSYIDHSPED-IWMMQKLMHLNFGSIT 214 (478)
Q Consensus 137 ~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 214 (478)
+.++.+++.++.+|..+. ++|++|++++|.+..+ |..+..+++|++|++++|.+..+|.. +..+++|++|++++|.
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 457777777777777554 6788888888888755 55677788888888888877777644 4677888888887776
Q ss_pred CCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCc
Q 047959 215 LPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSR 293 (478)
Q Consensus 215 ~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~ 293 (478)
+....+..+..+++|++|++.++. ..++ ..+..+++|+.|++++ +.++.+|.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--------------------------~~~~~l~~L~~L~L~~-N~l~~~~~ 152 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTELP--------------------------RGIERLTHLTHLALDQ-NQLKSIPH 152 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCSCC--------------------------TTGGGCTTCSEEECCS-SCCCCCCT
T ss_pred CCccChhHhCcchhhCeEeccCCcccccC--------------------------cccccCCCCCEEECCC-CcCCccCH
Confidence 554333345555555555555544 3333 3334455555555554 55555553
Q ss_pred cccccccCCCCceEEEEEeecCCC
Q 047959 294 MILSEYKFPPSLTQLSLSNTELVE 317 (478)
Q Consensus 294 ~~~~~~~~~~~L~~L~l~~~~~~~ 317 (478)
. .+.. +++|+.|++++|.+..
T Consensus 153 ~--~~~~-l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 153 G--AFDR-LSSLTHAYLFGNPWDC 173 (229)
T ss_dssp T--TTTT-CTTCCEEECTTSCBCT
T ss_pred H--HHhC-CCCCCEEEeeCCCccC
Confidence 1 3455 6677777777776544
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.51 E-value=1.1e-14 Score=141.27 Aligned_cols=170 Identities=21% Similarity=0.225 Sum_probs=112.9
Q ss_pred eEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchh-hh-CCCCCcEEeCCCCcCcccch-hhhccccCcEEEeeCC
Q 047959 137 RVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSL-LC-TLLNLQTLEMPSSYIDHSPE-DIWMMQKLMHLNFGSI 213 (478)
Q Consensus 137 ~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-~~-~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~ 213 (478)
++++++++.++.+|..+. ..+++|++++|.++.++.. +. .+++|++|++++|.+..++. .+..+++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 578999999999998664 3689999999999987765 44 88999999999999988874 5888999999999888
Q ss_pred CCCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEecCCcchhhHHHh-c---cCCCCCCEEEEEecCc
Q 047959 214 TLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKS-L---CQLHKLECLKLVNEGK 287 (478)
Q Consensus 214 ~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~-l---~~~~~L~~L~l~~~~~ 287 (478)
.+....+..+..+++|+.|++.++. ...+..+.++++|+.|++++|. .. .++.. + ..+++|+.|++++ +.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~--l~-~l~~~~~~~~~~l~~L~~L~L~~-N~ 174 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ--IS-RFPVELIKDGNKLPKLMLLDLSS-NK 174 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--CC-SCCGGGTC----CTTCCEEECCS-SC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc--CC-eeCHHHhcCcccCCcCCEEECCC-CC
Confidence 7665555567777888888777776 2234456666666666666652 11 11111 1 3455555555554 55
Q ss_pred ccccCccccccccCCCC--ceEEEEEeecC
Q 047959 288 MRQLSRMILSEYKFPPS--LTQLSLSNTEL 315 (478)
Q Consensus 288 l~~~p~~~~~~~~~~~~--L~~L~l~~~~~ 315 (478)
++.+|.. .+.. ++. |+.|++.+|.+
T Consensus 175 l~~l~~~--~~~~-l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 175 LKKLPLT--DLQK-LPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCCCCHH--HHHH-SCHHHHTTEECCSSCE
T ss_pred CCccCHH--Hhhh-ccHhhcceEEecCCCc
Confidence 5544421 2333 333 24455555544
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.51 E-value=1.8e-14 Score=139.63 Aligned_cols=124 Identities=21% Similarity=0.199 Sum_probs=66.6
Q ss_pred EeEEEecCCCCCcCCcc-CC-CCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCcccch-hhhccccCcEEEee
Q 047959 136 LRVLNLGSAVLDQYPPG-LE-NLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDHSPE-DIWMMQKLMHLNFG 211 (478)
Q Consensus 136 L~~L~L~~~~l~~lp~~-~~-~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~ 211 (478)
++.|+|++|.++.++.. +. .+++|++|++++|.+..++. .+..+++|++|++++|.+..++. .+..+++|++|+++
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 55566666665544433 33 55566666666666554442 35555666666666665555543 34555666666665
Q ss_pred CCCCCCCCCCCCCCCCCCcEeCcccCC-CCCcccc----CCCCCCcEEEEEec
Q 047959 212 SITLPAPPKNNSSPLKNLIFISALHPS-SCTPDIL----GRLPNVQTLRISGD 259 (478)
Q Consensus 212 ~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l----~~l~~L~~L~l~~~ 259 (478)
+|.+....|..+..+++|+.|++.++. ..++..+ ..+++|+.|++++|
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS
T ss_pred CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC
Confidence 555544444555556666666655555 3333322 34556666666655
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.50 E-value=8.9e-14 Score=125.69 Aligned_cols=154 Identities=21% Similarity=0.157 Sum_probs=111.2
Q ss_pred CCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCccc-chhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCccc
Q 047959 158 YLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHS-PEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALH 236 (478)
Q Consensus 158 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 236 (478)
.-+.++.+++.+..+|..+. ++|++|++++|.+..+ |..+..+++|++|++++|.+....+..+..+++|+.|++.+
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 45678888888888886554 7888888888887777 45677888888888877765433233345555555555544
Q ss_pred CCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCC
Q 047959 237 PSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELV 316 (478)
Q Consensus 237 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~ 316 (478)
+. .....+..+..+++|+.|++++ +.++.+|. .+.. +++|+.|++++|.+.
T Consensus 98 N~------------------------l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~---~~~~-l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 98 NQ------------------------LTVLPSAVFDRLVHLKELFMCC-NKLTELPR---GIER-LTHLTHLALDQNQLK 148 (229)
T ss_dssp SC------------------------CCCCCTTTTTTCTTCCEEECCS-SCCCSCCT---TGGG-CTTCSEEECCSSCCC
T ss_pred Cc------------------------CCccChhHhCcchhhCeEeccC-CcccccCc---cccc-CCCCCEEECCCCcCC
Confidence 43 2222223355677788888876 77888998 8888 999999999999988
Q ss_pred CCCcCcccCCCCCCeEEEeeCcccCc
Q 047959 317 EDPMPTLEELPHLEVLKLKQNSYLER 342 (478)
Q Consensus 317 ~~~~~~l~~l~~L~~L~L~~~~~~~~ 342 (478)
......+..+++|+.|++++|.+...
T Consensus 149 ~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 149 SIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred ccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 76667788999999999998887643
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.49 E-value=1.2e-13 Score=124.06 Aligned_cols=127 Identities=17% Similarity=0.225 Sum_probs=111.2
Q ss_pred CeEeEEEecCCCCCcCCc-cCCCCCCCceEeecCCCCCcc-chhhhCCCCCcEEeCCCCcCcccchh-hhccccCcEEEe
Q 047959 134 KHLRVLNLGSAVLDQYPP-GLENLFYLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSYIDHSPED-IWMMQKLMHLNF 210 (478)
Q Consensus 134 ~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 210 (478)
+.|+.|++++|.++.++. .+..+++|++|++++|.+..+ |..+.++++|++|++++|.+..+|.. +..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 579999999999997766 589999999999999999966 77899999999999999999999876 578999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCcEeCcccCC-CCC-ccccCCCCCCcEEEEEecC
Q 047959 211 GSITLPAPPKNNSSPLKNLIFISALHPS-SCT-PDILGRLPNVQTLRISGDL 260 (478)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~ 260 (478)
++|.+....|..+..+++|+.|++.++. ... +..+..+++|+.|++++|.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 9998887778889999999999999988 333 3457888889999888874
No 116
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.49 E-value=1.5e-14 Score=147.99 Aligned_cols=89 Identities=24% Similarity=0.346 Sum_probs=75.7
Q ss_pred eecccCCChhhHHHHHh-----------HhcccCCCceechhHHHHHHHHc--CCCC-----CChHHHHHHHHHHHHHcc
Q 047959 3 QIFSVMELPFHLKVCCI-----------YLCAFPPSIEISTEQLYQLWVAE--GFIP-----YNSEETAKHYLKELIHRG 64 (478)
Q Consensus 3 ~klSY~~L~~~~k~cFl-----------~~a~Fp~~~~i~~~~Li~~w~~~--g~~~-----~~~~~~~~~~~~~L~~~~ 64 (478)
+++||++||.++|.||+ |||+||+|+.|+ +++|+|+ ||+. ...+++++ |+++|+++|
T Consensus 367 l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rs 441 (549)
T 2a5y_B 367 TPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRG 441 (549)
T ss_dssp SSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBS
T ss_pred HhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcC
Confidence 68999999999999999 999999999998 8999999 9997 34788888 999999999
Q ss_pred ceeeeecCCCCcEeEEEeCHHHHHHHHHHhhhcCc
Q 047959 65 FIQVSKRRSGGTIKACYVPSIAYTSLALMARKTEF 99 (478)
Q Consensus 65 ll~~~~~~~~g~~~~~~mhdli~dl~~~~~~~e~~ 99 (478)
|++....+ +...|+|||+||++|+.+++++++
T Consensus 442 Ll~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 442 ALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp SCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred CeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 99987643 336799999999999998876643
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.48 E-value=7.5e-17 Score=165.07 Aligned_cols=196 Identities=19% Similarity=0.213 Sum_probs=135.2
Q ss_pred CCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCc--------------CcccchhhhccccCcEEE-eeCCCCCCC
Q 047959 154 ENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSY--------------IDHSPEDIWMMQKLMHLN-FGSITLPAP 218 (478)
Q Consensus 154 ~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--------------l~~lp~~i~~l~~L~~L~-l~~~~~~~~ 218 (478)
...++|+.|++++|.++.+|..+++|++|+.|+++++. ....|..++.+++|+.|+ ++.|... .
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-D 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-H
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-h
Confidence 56778888888888888888888888888888886652 234456677777777777 3322110 0
Q ss_pred CCC------CCCC--CCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccc
Q 047959 219 PKN------NSSP--LKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMR 289 (478)
Q Consensus 219 ~~~------~~~~--l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~ 289 (478)
++. .+.. ...|+.|++.++. ..++. ++.+++|+.|++++|. .. .+|..+..+++|+.|++++ +.++
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~--l~-~lp~~~~~l~~L~~L~Ls~-N~l~ 499 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR--LR-ALPPALAALRCLEVLQASD-NALE 499 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC--CC-CCCGGGGGCTTCCEEECCS-SCCC
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccc--cc-ccchhhhcCCCCCEEECCC-CCCC
Confidence 000 0000 1247778888877 55554 7888888888888873 33 6677888888888888887 7788
Q ss_pred ccCccccccccCCCCceEEEEEeecCCCCC-cCcccCCCCCCeEEEeeCcccCceeEEeC-CCCCcccceeEE
Q 047959 290 QLSRMILSEYKFPPSLTQLSLSNTELVEDP-MPTLEELPHLEVLKLKQNSYLERKLACVG-CSSFPQLKILHL 360 (478)
Q Consensus 290 ~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~~~-~~~~~~L~~L~L 360 (478)
.+| .++. +++|+.|++++|.+++.. +..++.+++|+.|+|++|.+.+..+.... ...+|+|+.|++
T Consensus 500 ~lp----~l~~-l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 500 NVD----GVAN-LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCG----GGTT-CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCc----ccCC-CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 777 5777 888999999888887765 77888888999999988887765432100 223678887753
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.47 E-value=9.2e-14 Score=124.76 Aligned_cols=153 Identities=14% Similarity=0.137 Sum_probs=115.1
Q ss_pred CceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccch--hhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCccc
Q 047959 159 LKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPE--DIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALH 236 (478)
Q Consensus 159 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 236 (478)
-+.++++++.++.+|..+. ..+++|++++|.+..++. .+..+++|++|++++|.+....+..+..+
T Consensus 13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l---------- 80 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGA---------- 80 (220)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTC----------
T ss_pred CCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCC----------
Confidence 4688888888888887654 467899999998888742 36788888888887775544333344444
Q ss_pred CCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccccc-CccccccccCCCCceEEEEEeecC
Q 047959 237 PSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQL-SRMILSEYKFPPSLTQLSLSNTEL 315 (478)
Q Consensus 237 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~-p~~~~~~~~~~~~L~~L~l~~~~~ 315 (478)
++|++|++++| ......+..+..+++|+.|++++ +.++.+ |. .+.. +++|+.|++++|.+
T Consensus 81 ------------~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~---~~~~-l~~L~~L~L~~N~l 141 (220)
T 2v70_A 81 ------------SGVNEILLTSN--RLENVQHKMFKGLESLKTLMLRS-NRITCVGND---SFIG-LSSVRLLSLYDNQI 141 (220)
T ss_dssp ------------TTCCEEECCSS--CCCCCCGGGGTTCSSCCEEECTT-SCCCCBCTT---SSTT-CTTCSEEECTTSCC
T ss_pred ------------CCCCEEECCCC--ccCccCHhHhcCCcCCCEEECCC-CcCCeECHh---HcCC-CccCCEEECCCCcC
Confidence 45555555555 23333344577889999999998 788876 55 6777 99999999999999
Q ss_pred CCCCcCcccCCCCCCeEEEeeCcccCc
Q 047959 316 VEDPMPTLEELPHLEVLKLKQNSYLER 342 (478)
Q Consensus 316 ~~~~~~~l~~l~~L~~L~L~~~~~~~~ 342 (478)
++..+..+..+++|+.|+|++|.+...
T Consensus 142 ~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 142 TTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 887788999999999999999987643
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.45 E-value=1.1e-14 Score=153.51 Aligned_cols=111 Identities=15% Similarity=0.118 Sum_probs=71.8
Q ss_pred cCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCC
Q 047959 148 QYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLK 227 (478)
Q Consensus 148 ~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 227 (478)
..+..+..+.+|+.|+|++|.+..+|..+..+++|++|+|++|.+..+|..++.+++|++|++++|.+. .+|..++.++
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 334456666677777777777666666666677777777777766667766667777777777666655 5666666677
Q ss_pred CCcEeCcccCC-CCCccccCCCCCCcEEEEEec
Q 047959 228 NLIFISALHPS-SCTPDILGRLPNVQTLRISGD 259 (478)
Q Consensus 228 ~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~ 259 (478)
+|++|++.+|. ..+|..++.+++|+.|++++|
T Consensus 294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTS
T ss_pred CCCEEECCCCCCCccChhhhcCCCccEEeCCCC
Confidence 77777776666 556666777777777777776
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.45 E-value=9.8e-14 Score=118.98 Aligned_cols=106 Identities=20% Similarity=0.121 Sum_probs=81.7
Q ss_pred CCCeEeEEEecCCCCC--cCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcc-cchhhhccccCcEE
Q 047959 132 KFKHLRVLNLGSAVLD--QYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDH-SPEDIWMMQKLMHL 208 (478)
Q Consensus 132 ~~~~L~~L~L~~~~l~--~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L 208 (478)
..+.|+.|++++|.++ .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+.. +|..+..+++|++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 3467899999999988 8888888999999999999998877 678889999999999998877 77777779999999
Q ss_pred EeeCCCCCCC-CCCCCCCCCCCcEeCcccCC
Q 047959 209 NFGSITLPAP-PKNNSSPLKNLIFISALHPS 238 (478)
Q Consensus 209 ~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~ 238 (478)
++++|.+... .+..+..+++|+.|++.+|.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~ 131 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCc
Confidence 9977755431 11344455555555554444
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.44 E-value=4.8e-14 Score=118.37 Aligned_cols=106 Identities=16% Similarity=0.121 Sum_probs=85.2
Q ss_pred CCCeEeEEEecCCCCC--cCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcc-cchhhhccccCcEE
Q 047959 132 KFKHLRVLNLGSAVLD--QYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDH-SPEDIWMMQKLMHL 208 (478)
Q Consensus 132 ~~~~L~~L~L~~~~l~--~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L 208 (478)
..++|+.|++++|.++ .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+..+++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 4467899999999988 8888889999999999999999877 678899999999999998887 77777789999999
Q ss_pred EeeCCCCCCC-CCCCCCCCCCCcEeCcccCC
Q 047959 209 NFGSITLPAP-PKNNSSPLKNLIFISALHPS 238 (478)
Q Consensus 209 ~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~ 238 (478)
++++|.+... .+..+..+++|++|++.+|.
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence 9977765431 22455666666666666554
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.41 E-value=6.7e-13 Score=116.42 Aligned_cols=122 Identities=16% Similarity=0.171 Sum_probs=99.0
Q ss_pred eEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchh--hhCCCCCcEEeCCCCcCccc-chhhhccccCcEEEeeCC
Q 047959 137 RVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSL--LCTLLNLQTLEMPSSYIDHS-PEDIWMMQKLMHLNFGSI 213 (478)
Q Consensus 137 ~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~--~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~ 213 (478)
++++++++.++.+|..+.. +|++|++++|.+..++.. ++.+++|++|++++|.+..+ |..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 6789999999988887654 899999999999887754 88899999999999988877 667888999999999888
Q ss_pred CCCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEecC
Q 047959 214 TLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGDL 260 (478)
Q Consensus 214 ~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~ 260 (478)
.+....+..+..+++|++|++.++. ...+..+..+++|+.|++++|.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 7776666668888888888888877 3445667777788888877774
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.40 E-value=1.8e-12 Score=113.71 Aligned_cols=122 Identities=20% Similarity=0.258 Sum_probs=103.2
Q ss_pred eEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccch-hhhccccCcEEEeeCCCC
Q 047959 137 RVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPE-DIWMMQKLMHLNFGSITL 215 (478)
Q Consensus 137 ~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~ 215 (478)
++++++++.++.+|..+. .+|++|++++|.++.+|..+..+++|++|++++|.+..++. .+..+++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 578999999999998664 58999999999999999999999999999999999988874 588999999999988887
Q ss_pred CCCCCCCCCCCCCCcEeCcccCC-CCCcc-ccCCCCCCcEEEEEecC
Q 047959 216 PAPPKNNSSPLKNLIFISALHPS-SCTPD-ILGRLPNVQTLRISGDL 260 (478)
Q Consensus 216 ~~~~~~~~~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~ 260 (478)
....+..+..+++|+.|++.++. ...+. .+..+++|+.|++++|.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 77667778889999999998887 44443 47788888888888874
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=2.2e-13 Score=116.77 Aligned_cols=133 Identities=14% Similarity=0.070 Sum_probs=79.1
Q ss_pred CCCCceEeecCCCCC--ccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeC
Q 047959 156 LFYLKYLKLNIPSLK--CLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFIS 233 (478)
Q Consensus 156 l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 233 (478)
.++|+.|++++|.+. .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+...+|..+..+++|++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 356777777777776 6776667777777777777766666 5566777777777776666554554455566666666
Q ss_pred cccCC-CCCc--cccCCCCCCcEEEEEecCCcchhhHH---HhccCCCCCCEEEEEecCcccccC
Q 047959 234 ALHPS-SCTP--DILGRLPNVQTLRISGDLSYYHSGVS---KSLCQLHKLECLKLVNEGKMRQLS 292 (478)
Q Consensus 234 l~~~~-~~~~--~~l~~l~~L~~L~l~~~~~~~~~~l~---~~l~~~~~L~~L~l~~~~~l~~~p 292 (478)
+.+|. ...+ ..+..+++|+.|++++|. .....+ ..+..+++|+.|++++ +....+|
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~--l~~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~ 163 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCE--VTNLNDYRESVFKLLPQLTYLDGYD-REDQEAP 163 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSG--GGTSTTHHHHHHTTCSSCCEETTEE-TTSCBCC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCc--CcchHHHHHHHHHhCccCcEecCCC-CChhhcc
Confidence 66665 3322 455556666666666552 111111 2444555555555554 3444444
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.37 E-value=2.9e-13 Score=117.03 Aligned_cols=126 Identities=17% Similarity=0.178 Sum_probs=97.2
Q ss_pred CCCCeEeEEEecCCCCCcCCccCCCCC-CCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhh-hccccCcEE
Q 047959 131 KKFKHLRVLNLGSAVLDQYPPGLENLF-YLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDI-WMMQKLMHL 208 (478)
Q Consensus 131 ~~~~~L~~L~L~~~~l~~lp~~~~~l~-~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L 208 (478)
..+..|+.|++++|.++.+|. +..+. +|++|++++|.+..+ ..+..+++|++|++++|.+..+|..+ ..+++|++|
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 457789999999999998865 55555 999999999999987 57889999999999999999988665 889999999
Q ss_pred EeeCCCCCCCCCC--CCCCCCCCcEeCcccCC-CCCccc----cCCCCCCcEEEEEec
Q 047959 209 NFGSITLPAPPKN--NSSPLKNLIFISALHPS-SCTPDI----LGRLPNVQTLRISGD 259 (478)
Q Consensus 209 ~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~-~~~~~~----l~~l~~L~~L~l~~~ 259 (478)
++++|.+ ..+|. .+..+++|+.|++.++. ...+.. +..+++|+.|+++.+
T Consensus 94 ~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 94 ILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp ECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred ECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 9987765 34454 56667777777777766 333332 566666666666665
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.35 E-value=1.7e-12 Score=124.15 Aligned_cols=261 Identities=15% Similarity=0.062 Sum_probs=166.0
Q ss_pred CCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccch-hhhC--------CCCCcEEeCCCCcCcccch-hhhcc
Q 047959 133 FKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPS-LLCT--------LLNLQTLEMPSSYIDHSPE-DIWMM 202 (478)
Q Consensus 133 ~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~--------l~~L~~L~l~~~~l~~lp~-~i~~l 202 (478)
+++|++|||++|.+......-+.++.++++.+..+ .+|. .+.+ +.+|+.|++.+ .+..+++ .+..|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~ 123 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGC 123 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTC
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcC
Confidence 67788899998887621111122333455555554 3332 3455 89999999988 7888875 47789
Q ss_pred ccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC------CCCccccCCCCCCc-EEEEEecCCcchhhHHHhccCCC
Q 047959 203 QKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS------SCTPDILGRLPNVQ-TLRISGDLSYYHSGVSKSLCQLH 275 (478)
Q Consensus 203 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~------~~~~~~l~~l~~L~-~L~l~~~~~~~~~~l~~~l~~~~ 275 (478)
++|+.++++.|......+..|..+.++..+...... ......+.++.+|+ .+.+.... .....+...-....
T Consensus 124 ~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~-~l~~~~~~~~~~~~ 202 (329)
T 3sb4_A 124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG-KLEDEIMKAGLQPR 202 (329)
T ss_dssp TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC-CHHHHHHHTTCCGG
T ss_pred cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC-cHHHHHhhcccCcc
Confidence 999999997776655455667777777777654421 12233355666776 55554432 12222222223456
Q ss_pred CCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCccc
Q 047959 276 KLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQL 355 (478)
Q Consensus 276 ~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L 355 (478)
+++.+.+.+.-.-..+.. .... +++|+.+++.+|.++......+.++++|+.+++.+| +. ...... +.++++|
T Consensus 203 ~~~~l~~~~~l~~~~~~~---l~~~-~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~a-F~~~~~L 275 (329)
T 3sb4_A 203 DINFLTIEGKLDNADFKL---IRDY-MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRV-FSNCGRL 275 (329)
T ss_dssp GCSEEEEEECCCHHHHHH---HHHH-CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTT-TTTCTTC
T ss_pred ccceEEEeeeecHHHHHH---HHHh-cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHH-hhCChhc
Confidence 777777765211111111 1123 788999999988877666678889999999999865 22 222222 6788889
Q ss_pred c-eeEEecCCCCCcee-eCCCcccccceeEEecCCCCCCCc-cccCCCCCCCEEEE
Q 047959 356 K-ILHLKSMLWLEEWT-MGAGAMPKLESLILNPCAYLRKLP-EEQWCIKSLCKLEL 408 (478)
Q Consensus 356 ~-~L~L~~~~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l 408 (478)
+ .+.+.+ .++.++ ..+..+++|+.|++.++. ++.++ ..+.++++|+.++.
T Consensus 276 ~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 276 AGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDK-ITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CEEEEECT--TCCEECTTTTTTCTTEEEEEECSSC-CCEECTTTTCTTCCCCEEEC
T ss_pred cEEEEEcc--cceEEchhhhhCCccCCEEEeCCCc-cCccchhhhcCCcchhhhcc
Confidence 8 999986 677665 345678899999987764 45554 46788999998863
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.34 E-value=1.6e-12 Score=133.03 Aligned_cols=119 Identities=16% Similarity=0.141 Sum_probs=74.6
Q ss_pred CCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccC
Q 047959 158 YLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHP 237 (478)
Q Consensus 158 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 237 (478)
.|++|++++|.++.+|. ++.+++|++|++++|.+..+|..++.+++|++|++++|.+.. +| .++.+++|++|++.+|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCC
Confidence 46667777776666665 666677777777777666676666777777777776665543 45 6666777777776666
Q ss_pred C-CCC--ccccCCCCCCcEEEEEecCCcchhh---HHHhccCCCCCCEEE
Q 047959 238 S-SCT--PDILGRLPNVQTLRISGDLSYYHSG---VSKSLCQLHKLECLK 281 (478)
Q Consensus 238 ~-~~~--~~~l~~l~~L~~L~l~~~~~~~~~~---l~~~l~~~~~L~~L~ 281 (478)
. ... |..++.+++|+.|++++|. ..+. ....+..+++|+.|+
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~--l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNS--LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSG--GGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCc--CCCCccHHHHHHHHCcccCccC
Confidence 6 333 6667777777777777763 2111 112233466777665
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.31 E-value=4.2e-13 Score=112.54 Aligned_cols=104 Identities=15% Similarity=0.082 Sum_probs=72.2
Q ss_pred CCCCCceEeecCCCCC--ccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEe
Q 047959 155 NLFYLKYLKLNIPSLK--CLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFI 232 (478)
Q Consensus 155 ~l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 232 (478)
..++|+.|++++|.+. .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+...+|..+..+++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 3467888888888887 7887778888888888888887777 567788888888887776655555555556666666
Q ss_pred CcccCC-CCC--ccccCCCCCCcEEEEEec
Q 047959 233 SALHPS-SCT--PDILGRLPNVQTLRISGD 259 (478)
Q Consensus 233 ~l~~~~-~~~--~~~l~~l~~L~~L~l~~~ 259 (478)
++.+|. ... +..++.+++|+.|++++|
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence 666665 222 144555555555555555
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.28 E-value=5.6e-12 Score=110.47 Aligned_cols=126 Identities=14% Similarity=0.102 Sum_probs=90.4
Q ss_pred CceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchh--hhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCccc
Q 047959 159 LKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPED--IWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALH 236 (478)
Q Consensus 159 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~--i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 236 (478)
-+++++++++++.+|..+.. +|++|++++|.+..++.. +..+++|++|++++|.+....|..+..+++|++|++.+
T Consensus 10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 37899999999999987653 899999999999888763 88999999999988887776777788888888888777
Q ss_pred CC-C-CCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccccc-CccccccccCCCCceEEEEEee
Q 047959 237 PS-S-CTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQL-SRMILSEYKFPPSLTQLSLSNT 313 (478)
Q Consensus 237 ~~-~-~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~-p~~~~~~~~~~~~L~~L~l~~~ 313 (478)
+. . ..+..+.++++|+.|++++| .++.+ |. .+.. +++|+.|++++|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N---------------------------~l~~~~~~---~~~~-l~~L~~L~L~~N 136 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDN---------------------------QISCVMPG---SFEH-LNSLTSLNLASN 136 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSS---------------------------CCCEECTT---SSTT-CTTCCEEECTTC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCC---------------------------cCCeeCHH---Hhhc-CCCCCEEEeCCC
Confidence 75 2 22223444555555555444 44433 44 4555 667777777777
Q ss_pred cCCC
Q 047959 314 ELVE 317 (478)
Q Consensus 314 ~~~~ 317 (478)
.+.+
T Consensus 137 ~l~c 140 (192)
T 1w8a_A 137 PFNC 140 (192)
T ss_dssp CBCC
T ss_pred CccC
Confidence 6654
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=6.3e-12 Score=132.62 Aligned_cols=111 Identities=19% Similarity=0.158 Sum_probs=100.9
Q ss_pred ccccCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCc
Q 047959 127 ENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLM 206 (478)
Q Consensus 127 ~~~~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~ 206 (478)
...+..++.|++|+|++|.+..+|..+..+++|++|+|++|.++.+|..++++++|++|+|++|.+..+|..++.|++|+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence 45568889999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC
Q 047959 207 HLNFGSITLPAPPKNNSSPLKNLIFISALHPS 238 (478)
Q Consensus 207 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 238 (478)
+|++++|.+. .+|..++.+++|++|++.+|.
T Consensus 297 ~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 297 YFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp EEECCSSCCC-CCCSSTTSCTTCCCEECTTSC
T ss_pred EEECCCCCCC-ccChhhhcCCCccEEeCCCCc
Confidence 9999888665 789889999999999999987
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.26 E-value=2e-11 Score=106.93 Aligned_cols=126 Identities=14% Similarity=0.220 Sum_probs=90.0
Q ss_pred CceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC
Q 047959 159 LKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS 238 (478)
Q Consensus 159 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 238 (478)
-++++++++.++.+|..+. .+|++|++++|.+..+|..+..+++|++|++++|.+....+..+..+++|++|++.++.
T Consensus 12 ~~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 3689999999999997654 68999999999999999999999999999998887776666667777777777777765
Q ss_pred -CC-CccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCC
Q 047959 239 -SC-TPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELV 316 (478)
Q Consensus 239 -~~-~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~ 316 (478)
.. .+..+..+++ |+.|++++ +.++.+|.. .+.. +++|+.|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~--------------------------L~~L~L~~-N~l~~~~~~--~~~~-l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKS--------------------------LRLLSLHG-NDISVVPEG--AFND-LSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTT--------------------------CCEEECCS-SCCCBCCTT--TTTT-CTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCC--------------------------CCEEECCC-CCCCeeChh--hhhc-CccccEEEeCCCCee
Confidence 22 2223444444 44555544 445555441 2444 666777777666654
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.26 E-value=4.4e-11 Score=103.27 Aligned_cols=123 Identities=21% Similarity=0.241 Sum_probs=92.3
Q ss_pred EeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchh-hhCCCCCcEEeCCCCcCcccchh-hhccccCcEEEeeCC
Q 047959 136 LRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSL-LCTLLNLQTLEMPSSYIDHSPED-IWMMQKLMHLNFGSI 213 (478)
Q Consensus 136 L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~ 213 (478)
.+.++++++.++.+|..+. ++|++|++++|.+..+|.. +..+++|++|++++|.+..+|.. +..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 3578888888888886543 5888888888888877654 57888888888888888888754 578888888888777
Q ss_pred CCCCCCCCCCCCCCCCcEeCcccCC-CCCccc-cCCCCCCcEEEEEecC
Q 047959 214 TLPAPPKNNSSPLKNLIFISALHPS-SCTPDI-LGRLPNVQTLRISGDL 260 (478)
Q Consensus 214 ~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-l~~l~~L~~L~l~~~~ 260 (478)
.+....+..+..+++|++|++.++. ...+.. +..+++|+.|++++|.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 7665555556778888888888777 444433 5677788888887773
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.23 E-value=1.3e-11 Score=106.52 Aligned_cols=120 Identities=13% Similarity=0.098 Sum_probs=100.3
Q ss_pred CCCCeeeec--------CccccCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhh-hCCCCCcEEeC
Q 047959 117 KSDHLALIH--------CENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLL-CTLLNLQTLEM 187 (478)
Q Consensus 117 ~~~~lr~l~--------~~~~~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l 187 (478)
.+.+++.|+ .+.+....++|++|++++|.++.+ ..++.+++|++|++++|.+..+|+.+ ..+++|++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 456666662 123334455999999999999977 56999999999999999999888665 89999999999
Q ss_pred CCCcCcccch--hhhccccCcEEEeeCCCCCCCCCCC----CCCCCCCcEeCcccCC
Q 047959 188 PSSYIDHSPE--DIWMMQKLMHLNFGSITLPAPPKNN----SSPLKNLIFISALHPS 238 (478)
Q Consensus 188 ~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~ 238 (478)
++|.+..+|. .+..+++|++|++++|.+. ..|.. +..+++|+.|++..+.
T Consensus 96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 96 TNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 9999999987 7899999999999888765 55654 7889999999999887
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.21 E-value=1.2e-13 Score=121.80 Aligned_cols=121 Identities=17% Similarity=0.168 Sum_probs=66.5
Q ss_pred EeEEEecCC--CCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCC
Q 047959 136 LRVLNLGSA--VLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSI 213 (478)
Q Consensus 136 L~~L~L~~~--~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~ 213 (478)
++...+.+. .++.+|..++.+++|++|++++|.+..+| .+..+++|++|++++|.+..+|..+..+++|++|++++|
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN 103 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC
Confidence 334444433 24445556666777777777777666666 666677777777777766667666666677777777666
Q ss_pred CCCCCCCCCCCCCCCCcEeCcccCC-CCCc--cccCCCCCCcEEEEEec
Q 047959 214 TLPAPPKNNSSPLKNLIFISALHPS-SCTP--DILGRLPNVQTLRISGD 259 (478)
Q Consensus 214 ~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~--~~l~~l~~L~~L~l~~~ 259 (478)
.+.. +| .+..+++|+.|++.++. ...+ ..+..+++|+.|++++|
T Consensus 104 ~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 104 QIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp ECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred cCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 4432 22 23334444444444433 1111 13444444444444444
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.17 E-value=1.3e-10 Score=99.57 Aligned_cols=101 Identities=20% Similarity=0.265 Sum_probs=79.2
Q ss_pred EeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCcc-chhhhCCCCCcEEeCCCCcCcccchh-hhccccCcEEEeeCC
Q 047959 136 LRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSYIDHSPED-IWMMQKLMHLNFGSI 213 (478)
Q Consensus 136 L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~ 213 (478)
.+.++++++.++.+|..+. ++|++|++++|.++.+ |..+..+++|++|++++|.+..+|.. +..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4688999999988887764 7899999999999876 55688899999999999988888765 478889999999877
Q ss_pred CCCCCCCCCCCCCCCCcEeCcccCC
Q 047959 214 TLPAPPKNNSSPLKNLIFISALHPS 238 (478)
Q Consensus 214 ~~~~~~~~~~~~l~~L~~L~l~~~~ 238 (478)
.+....+..+..+++|+.|++.++.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 7665444456677777777766654
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.16 E-value=1.8e-10 Score=98.97 Aligned_cols=100 Identities=24% Similarity=0.304 Sum_probs=80.7
Q ss_pred eEEEecCCCCCcCCccCCCCCCCceEeecCCCCCcc-chhhhCCCCCcEEeCCCCcCcccchh-hhccccCcEEEeeCCC
Q 047959 137 RVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSYIDHSPED-IWMMQKLMHLNFGSIT 214 (478)
Q Consensus 137 ~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 214 (478)
+.++++++.++.+|..+. .+|++|++++|.+..+ |..+.++++|++|++++|.+..+|.. +..+++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 678999999998888764 7899999999999976 55788899999999999999988876 4788999999998877
Q ss_pred CCCCCCCCCCCCCCCcEeCcccCC
Q 047959 215 LPAPPKNNSSPLKNLIFISALHPS 238 (478)
Q Consensus 215 ~~~~~~~~~~~l~~L~~L~l~~~~ 238 (478)
+....+..+..+++|+.|++.++.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred cceeCHHHhccccCCCEEEeCCCC
Confidence 664334447777777777777665
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.16 E-value=1.6e-10 Score=99.64 Aligned_cols=106 Identities=22% Similarity=0.238 Sum_probs=91.6
Q ss_pred CCeEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCCccchh-hhCCCCCcEEeCCCCcCcccchh-hhccccCcEEE
Q 047959 133 FKHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCLPSL-LCTLLNLQTLEMPSSYIDHSPED-IWMMQKLMHLN 209 (478)
Q Consensus 133 ~~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~ 209 (478)
.+.|+.|++++|.++.+|.. ++.+++|++|++++|.++.+|.. +..+++|++|++++|.+..+|.. +..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 36799999999999977765 78999999999999999988765 68999999999999999998865 67899999999
Q ss_pred eeCCCCCCCCCCCCCCCCCCcEeCcccCC
Q 047959 210 FGSITLPAPPKNNSSPLKNLIFISALHPS 238 (478)
Q Consensus 210 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 238 (478)
+++|.+....+..+..+++|++|++.++.
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 98887764444446889999999999886
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.10 E-value=2.8e-12 Score=113.02 Aligned_cols=145 Identities=21% Similarity=0.232 Sum_probs=87.2
Q ss_pred CCceEeecCC--CCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcc
Q 047959 158 YLKYLKLNIP--SLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISAL 235 (478)
Q Consensus 158 ~L~~L~l~~~--~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 235 (478)
.|+...+.++ .++.+|..+..+++|++|++++|.+..+| .+..+++|++|++++|.+. .+|..+..+
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~--------- 92 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVA--------- 92 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH---------
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhcC---------
Confidence 4555555543 46677778999999999999999888888 7889999999999777554 344333333
Q ss_pred cCCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeecC
Q 047959 236 HPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTEL 315 (478)
Q Consensus 236 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~ 315 (478)
++|+.|++++|. .. .++ .+..+++|+.|++++ +.++.+|. +..+.. +++|+.|++++|.+
T Consensus 93 -------------~~L~~L~L~~N~--l~-~l~-~~~~l~~L~~L~l~~-N~i~~~~~-~~~l~~-l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 93 -------------DTLEELWISYNQ--IA-SLS-GIEKLVNLRVLYMSN-NKITNWGE-IDKLAA-LDKLEDLLLAGNPL 152 (198)
T ss_dssp -------------HHCSEEEEEEEE--CC-CHH-HHHHHHHSSEEEESE-EECCCHHH-HHHHTT-TTTCSEEEECSCHH
T ss_pred -------------CcCCEEECcCCc--CC-cCC-ccccCCCCCEEECCC-CcCCchhH-HHHHhc-CCCCCEEEecCCcc
Confidence 445555555542 11 122 344555666666665 44444331 002444 56666666666655
Q ss_pred CCCCcC----------cccCCCCCCeEE
Q 047959 316 VEDPMP----------TLEELPHLEVLK 333 (478)
Q Consensus 316 ~~~~~~----------~l~~l~~L~~L~ 333 (478)
.+..+. .+..+++|+.|+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 153 YNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccccccccchHHHHHHHHHhCCCcEEEC
Confidence 433222 245566666665
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.09 E-value=2.2e-09 Score=104.96 Aligned_cols=236 Identities=9% Similarity=0.099 Sum_probs=129.1
Q ss_pred CCceEeecCCCCCccchh-hhCCCCCcEEeCCCCcCcccc-hhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcc
Q 047959 158 YLKYLKLNIPSLKCLPSL-LCTLLNLQTLEMPSSYIDHSP-EDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISAL 235 (478)
Q Consensus 158 ~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 235 (478)
+|+.+.+..+ ++.++.. +.+ .+|+.+.+.. .+..++ ..+..|++|+.++++.|... .++...-...+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEeecccCEEEeC
Confidence 4555554433 4433322 222 2455555543 333333 22344555555555333222 222221113445555444
Q ss_pred cCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeec
Q 047959 236 HPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTE 314 (478)
Q Consensus 236 ~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~ 314 (478)
..- ......|.++++|+.+.+..+- ...-...+.. .+|+.+.+. +.++.++.. .+.. +++|+.+.+.++.
T Consensus 212 ~~l~~I~~~aF~~~~~L~~l~l~~~l---~~I~~~aF~~-~~L~~i~lp--~~i~~I~~~--aF~~-c~~L~~l~l~~~~ 282 (401)
T 4fdw_A 212 VTLKEIGSQAFLKTSQLKTIEIPENV---STIGQEAFRE-SGITTVKLP--NGVTNIASR--AFYY-CPELAEVTTYGST 282 (401)
T ss_dssp TTCCEECTTTTTTCTTCCCEECCTTC---CEECTTTTTT-CCCSEEEEE--TTCCEECTT--TTTT-CTTCCEEEEESSC
T ss_pred CchheehhhHhhCCCCCCEEecCCCc---cCcccccccc-CCccEEEeC--CCccEEChh--HhhC-CCCCCEEEeCCcc
Confidence 222 1223345566666666665431 1111123334 678888884 556666552 5556 8899999998876
Q ss_pred CC-----CCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceeeC-CCcccccceeEEecCC
Q 047959 315 LV-----EDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCA 388 (478)
Q Consensus 315 ~~-----~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~-~~~~~~L~~L~l~~c~ 388 (478)
.. ......+.++++|+.+.|. +.+.. ..... +.++++|+.+.|.. +++.+... +..+ +|+.+.+.++.
T Consensus 283 ~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~-I~~~a-F~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 283 FNDDPEAMIHPYCLEGCPKLARFEIP-ESIRI-LGQGL-LGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp CCCCTTCEECTTTTTTCTTCCEECCC-TTCCE-ECTTT-TTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCSS
T ss_pred ccCCcccEECHHHhhCCccCCeEEeC-CceEE-Ehhhh-hcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCCC
Confidence 53 2334567889999999998 33321 11112 67789999999964 56766543 3456 99999999885
Q ss_pred CCCCCccccCCC-CCCCEEEEecCc
Q 047959 389 YLRKLPEEQWCI-KSLCKLELHWPQ 412 (478)
Q Consensus 389 ~l~~lp~~l~~l-~~L~~L~l~~c~ 412 (478)
.....+..+.++ .+++.|++-...
T Consensus 357 ~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 357 PPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred CcccccccccCCCCCccEEEeCHHH
Confidence 433333445566 478999986633
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.04 E-value=3.5e-09 Score=103.47 Aligned_cols=242 Identities=10% Similarity=0.085 Sum_probs=166.6
Q ss_pred ccccCCCCeEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCCccc-hhhhCCCCCcEEeCCCCcCcccchhhhcccc
Q 047959 127 ENFCKKFKHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCLP-SLLCTLLNLQTLEMPSSYIDHSPEDIWMMQK 204 (478)
Q Consensus 127 ~~~~~~~~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~ 204 (478)
...|..+ +|+.+.+..+ ++.++.. |.+ .+|+.+.+.. .++.++ ..+.+|.+|+.+++.++.+..+|.....+.+
T Consensus 129 ~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~ 204 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAG 204 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCC
T ss_pred HhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecc
Confidence 3445555 6899998776 6666554 555 4799999986 677666 4578899999999999999999887777889
Q ss_pred CcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEE
Q 047959 205 LMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLV 283 (478)
Q Consensus 205 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~ 283 (478)
|+.+.+. +.....-...|..+++|+.+.+..+- ......|.+ .+|+.+.+... ....-...+..+++|+.+.+.
T Consensus 205 L~~l~lp-~~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~~---i~~I~~~aF~~c~~L~~l~l~ 279 (401)
T 4fdw_A 205 IEEVLLP-VTLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPNG---VTNIASRAFYYCPELAEVTTY 279 (401)
T ss_dssp CSEEECC-TTCCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEETT---CCEECTTTTTTCTTCCEEEEE
T ss_pred cCEEEeC-CchheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeCCC---ccEEChhHhhCCCCCCEEEeC
Confidence 9999994 43433344568889999999887654 222334555 68999999653 222234567889999999998
Q ss_pred ecCccc-----ccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCccccee
Q 047959 284 NEGKMR-----QLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKIL 358 (478)
Q Consensus 284 ~~~~l~-----~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L 358 (478)
+ +... .++.. .+.. +++|+.+.+.+ .+.......+.++++|+.+.|..+ +.... ... +.++ +|+.+
T Consensus 280 ~-~~~~~~~~~~I~~~--aF~~-c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~-~~a-F~~~-~L~~l 350 (401)
T 4fdw_A 280 G-STFNDDPEAMIHPY--CLEG-CPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQIN-FSA-FNNT-GIKEV 350 (401)
T ss_dssp S-SCCCCCTTCEECTT--TTTT-CTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEEC-TTS-SSSS-CCCEE
T ss_pred C-ccccCCcccEECHH--HhhC-CccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEc-HHh-CCCC-CCCEE
Confidence 6 4433 35542 4566 89999999984 355555567888999999999744 32111 111 6777 99999
Q ss_pred EEecCCCCCceeeC-CCccc-ccceeEEecC
Q 047959 359 HLKSMLWLEEWTMG-AGAMP-KLESLILNPC 387 (478)
Q Consensus 359 ~L~~~~~l~~l~~~-~~~~~-~L~~L~l~~c 387 (478)
.+.++ .+..++.. +..++ +++.|.+...
T Consensus 351 ~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 351 KVEGT-TPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp EECCS-SCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred EEcCC-CCcccccccccCCCCCccEEEeCHH
Confidence 99884 44444322 23453 6778877654
No 141
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.00 E-value=1.6e-10 Score=130.05 Aligned_cols=85 Identities=20% Similarity=0.300 Sum_probs=75.1
Q ss_pred eecccCCChhhHHHHHhHhcccCCCceechhHHHHHHHHcCCCCCChHHHHHHHHHHHHHccceeeeecCCCCcEeEEEe
Q 047959 3 QIFSVMELPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIPYNSEETAKHYLKELIHRGFIQVSKRRSGGTIKACYV 82 (478)
Q Consensus 3 ~klSY~~L~~~~k~cFl~~a~Fp~~~~i~~~~Li~~w~~~g~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~m 82 (478)
+++||+.||+++|+||+|||+||+++.|+++.++.+|.++ ++.++.++++|+++||++... +|+...|+|
T Consensus 368 l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~ 437 (1249)
T 3sfz_A 368 MSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEFVNKSLLFCNR---NGKSFCYYL 437 (1249)
T ss_dssp HHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSCEEEE---SSSSEEEEC
T ss_pred HHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------HHHHHHHHHHHHhccceEEec---CCCceEEEe
Confidence 5689999999999999999999999999999999999655 456899999999999999765 455567999
Q ss_pred CHHHHHHHHHHhhhc
Q 047959 83 PSIAYTSLALMARKT 97 (478)
Q Consensus 83 hdli~dl~~~~~~~e 97 (478)
||++|++++..++++
T Consensus 438 h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 438 HDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp CHHHHHHHHHHTGGG
T ss_pred cHHHHHHHHhhhhHH
Confidence 999999999887654
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.99 E-value=6.1e-10 Score=106.27 Aligned_cols=233 Identities=11% Similarity=-0.021 Sum_probs=150.6
Q ss_pred EeEEEecCCCCCcCCcc-CCC--------CCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCcccchh-hhcccc
Q 047959 136 LRVLNLGSAVLDQYPPG-LEN--------LFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDHSPED-IWMMQK 204 (478)
Q Consensus 136 L~~L~L~~~~l~~lp~~-~~~--------l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~ 204 (478)
++.+.+..+. +|+. |.+ +.+|+.|.+.. .++.+++ .+.+|.+|+.+++.++.+..++.. +..+.+
T Consensus 74 ~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~ 149 (329)
T 3sb4_A 74 GKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVT 149 (329)
T ss_dssp GCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTC
T ss_pred cccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCc
Confidence 4555555553 3333 556 89999999988 7887775 478899999999999988777643 555666
Q ss_pred CcEEEeeCCC----CCCCCCCCCCCCCCCc-EeCcccCC---CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCC
Q 047959 205 LMHLNFGSIT----LPAPPKNNSSPLKNLI-FISALHPS---SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHK 276 (478)
Q Consensus 205 L~~L~l~~~~----~~~~~~~~~~~l~~L~-~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~ 276 (478)
+..+..+.+. ...--...+..+.+|+ .+.+.... ......-....++..+.+.+. ............+++
T Consensus 150 l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~--l~~~~~~~l~~~~~~ 227 (329)
T 3sb4_A 150 AIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK--LDNADFKLIRDYMPN 227 (329)
T ss_dssp EEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC--CCHHHHHHHHHHCTT
T ss_pred eEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeee--ecHHHHHHHHHhcCC
Confidence 6666552210 0111122244455565 33322221 111111224567788888876 333333333335899
Q ss_pred CCEEEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCC-eEEEeeCcccCceeEEeCCCCCccc
Q 047959 277 LECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLE-VLKLKQNSYLERKLACVGCSSFPQL 355 (478)
Q Consensus 277 L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~-~L~L~~~~~~~~~~~~~~~~~~~~L 355 (478)
|+.+++.+ +.++.+|.. .+.. +++|+.+++.++ +.......+.++++|+ .+.+.+ .+.. ..... +.++++|
T Consensus 228 L~~l~L~~-n~i~~I~~~--aF~~-~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~-I~~~a-F~~c~~L 299 (329)
T 3sb4_A 228 LVSLDISK-TNATTIPDF--TFAQ-KKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTA-IEFGA-FMGCDNL 299 (329)
T ss_dssp CCEEECTT-BCCCEECTT--TTTT-CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCE-ECTTT-TTTCTTE
T ss_pred CeEEECCC-CCcceecHh--hhhC-CCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceE-Echhh-hhCCccC
Confidence 99999996 778888873 4666 999999999987 5555666889999999 999985 3322 11112 7889999
Q ss_pred ceeEEecCCCCCceee-CCCcccccceeE
Q 047959 356 KILHLKSMLWLEEWTM-GAGAMPKLESLI 383 (478)
Q Consensus 356 ~~L~L~~~~~l~~l~~-~~~~~~~L~~L~ 383 (478)
+.+++.. +.++.++. .+..+++|+.++
T Consensus 300 ~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 300 RYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred CEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 9999976 57777765 346778888875
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.96 E-value=2.1e-09 Score=91.93 Aligned_cols=101 Identities=16% Similarity=0.148 Sum_probs=83.6
Q ss_pred CCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCccc-chhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCccc
Q 047959 158 YLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHS-PEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALH 236 (478)
Q Consensus 158 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 236 (478)
..+.++++++.++.+|..+. .+|++|++++|.+..+ |..+..+++|++|++++|.+....+..+..+++|++|++.+
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 56889999999999997764 8999999999999888 55688999999999988887755555578899999999988
Q ss_pred CC-CCCcc-ccCCCCCCcEEEEEecC
Q 047959 237 PS-SCTPD-ILGRLPNVQTLRISGDL 260 (478)
Q Consensus 237 ~~-~~~~~-~l~~l~~L~~L~l~~~~ 260 (478)
+. ...+. .+..+++|+.|++++|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 88 44444 47888888888888874
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.95 E-value=2.4e-09 Score=91.87 Aligned_cols=101 Identities=17% Similarity=0.150 Sum_probs=80.9
Q ss_pred CCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCccc-chhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCccc
Q 047959 158 YLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHS-PEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALH 236 (478)
Q Consensus 158 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 236 (478)
.-+.++++++.+..+|..+. .+|++|++++|.+..+ |..+..+++|++|++++|.+....+..+..+++|++|++.+
T Consensus 13 ~~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 13 DQTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp CSSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 34789999999999998764 8999999999999888 55688999999999988877654444468888999999888
Q ss_pred CC-CCCccc-cCCCCCCcEEEEEecC
Q 047959 237 PS-SCTPDI-LGRLPNVQTLRISGDL 260 (478)
Q Consensus 237 ~~-~~~~~~-l~~l~~L~~L~l~~~~ 260 (478)
+. ...+.. +..+++|+.|++++|.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CccceeCHHHhccccCCCEEEeCCCC
Confidence 87 444443 7778888888888774
No 145
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.93 E-value=2.5e-10 Score=120.28 Aligned_cols=78 Identities=19% Similarity=0.152 Sum_probs=67.9
Q ss_pred eecccCCChhhH-HHHHhHhcccCCCceechhHHHHHHHHcCCCCCChHHHHHHHHHHHHHccceeeeecCCCCcEeEEE
Q 047959 3 QIFSVMELPFHL-KVCCIYLCAFPPSIEISTEQLYQLWVAEGFIPYNSEETAKHYLKELIHRGFIQVSKRRSGGTIKACY 81 (478)
Q Consensus 3 ~klSY~~L~~~~-k~cFl~~a~Fp~~~~i~~~~Li~~w~~~g~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~ 81 (478)
+++||+.||+++ |+||+|||+||+++.|+++.++.+|+++| ++.++.++++|+++||++.. +....|+
T Consensus 359 LelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG------eedAe~~L~eLvdRSLLq~d-----~~~~rYr 427 (1221)
T 1vt4_I 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------KSDVMVVVNKLHKYSLVEKQ-----PKESTIS 427 (1221)
T ss_dssp HHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC------SHHHHHHHHHHHTSSSSSBC-----SSSSEEB
T ss_pred HHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC------HHHHHHHHHHHHhhCCEEEe-----CCCCEEE
Confidence 578999999998 99999999999999999999999999987 23588999999999999873 1224699
Q ss_pred eCHHHHHHHH
Q 047959 82 VPSIAYTSLA 91 (478)
Q Consensus 82 mhdli~dl~~ 91 (478)
|||++++++.
T Consensus 428 MHDLllELr~ 437 (1221)
T 1vt4_I 428 IPSIYLELKV 437 (1221)
T ss_dssp CCCHHHHHHH
T ss_pred ehHHHHHHhc
Confidence 9999999663
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.79 E-value=1.9e-08 Score=96.65 Aligned_cols=99 Identities=19% Similarity=0.102 Sum_probs=70.7
Q ss_pred EEEecCC-CCCcCCccCCCCCCCceEeecC-CCCCccc-hhhhCCCCCcEEeCCCCcCcccch-hhhccccCcEEEeeCC
Q 047959 138 VLNLGSA-VLDQYPPGLENLFYLKYLKLNI-PSLKCLP-SLLCTLLNLQTLEMPSSYIDHSPE-DIWMMQKLMHLNFGSI 213 (478)
Q Consensus 138 ~L~L~~~-~l~~lp~~~~~l~~L~~L~l~~-~~i~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~ 213 (478)
.++.+++ .++.+|. +..+.+|++|+|++ |.+..+| ..++.+.+|++|+|++|.+..+|. .+.++++|++|++++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3577777 6778888 88888888888885 7888666 457788888888888887777754 4677888888888777
Q ss_pred CCCCCCCCCCCCCCCCcEeCcccCC
Q 047959 214 TLPAPPKNNSSPLKNLIFISALHPS 238 (478)
Q Consensus 214 ~~~~~~~~~~~~l~~L~~L~l~~~~ 238 (478)
.+....+..+..++ |+.|++.++.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCC
Confidence 66543333344444 7777777665
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.78 E-value=8.6e-11 Score=113.79 Aligned_cols=59 Identities=24% Similarity=0.241 Sum_probs=26.1
Q ss_pred CeEeEEEecCCCCCc-----CCccCC-CCCCCceEeecCCCCCc--cchhhhCCCCCcEEeCCCCcC
Q 047959 134 KHLRVLNLGSAVLDQ-----YPPGLE-NLFYLKYLKLNIPSLKC--LPSLLCTLLNLQTLEMPSSYI 192 (478)
Q Consensus 134 ~~L~~L~L~~~~l~~-----lp~~~~-~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~l 192 (478)
+.|+.|+|++|.++. +...+. ...+|+.|++++|.+.. +..-...+.+|++|++++|.+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l 138 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL 138 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCC
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCC
Confidence 445566666666541 111111 12455555555555541 111122234455555555544
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.69 E-value=2.6e-10 Score=110.36 Aligned_cols=162 Identities=15% Similarity=0.099 Sum_probs=92.8
Q ss_pred CCCceEeecCCCCCc-----cchhhh-CCCCCcEEeCCCCcCccc--chhhhccccCcEEEeeCCCCCCCCCCCC-----
Q 047959 157 FYLKYLKLNIPSLKC-----LPSLLC-TLLNLQTLEMPSSYIDHS--PEDIWMMQKLMHLNFGSITLPAPPKNNS----- 223 (478)
Q Consensus 157 ~~L~~L~l~~~~i~~-----lp~~~~-~l~~L~~L~l~~~~l~~l--p~~i~~l~~L~~L~l~~~~~~~~~~~~~----- 223 (478)
++|++|++++|.+.. +...+. ...+|++|++++|.+..- ..-...+++|++|++++|.+.......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 467777777777662 111222 225777777777765432 1222345667777776665433211111
Q ss_pred CCCCCCcEeCcccCC------CCCccccCCCCCCcEEEEEecC--CcchhhHHHhccCCCCCCEEEEEecCcccc-----
Q 047959 224 SPLKNLIFISALHPS------SCTPDILGRLPNVQTLRISGDL--SYYHSGVSKSLCQLHKLECLKLVNEGKMRQ----- 290 (478)
Q Consensus 224 ~~l~~L~~L~l~~~~------~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~----- 290 (478)
...++|++|++.+|. ..+...+..+++|++|++++|. ......+...+...++|+.|++++ +.++.
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~-N~i~~~g~~~ 230 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY-NGAGDTAALA 230 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCS-SCCCHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCC-CCCCHHHHHH
Confidence 234567777777776 1233344566777777777774 112234456667777888888887 55542
Q ss_pred cCccccccccCCCCceEEEEEeecCCCCCcCcc
Q 047959 291 LSRMILSEYKFPPSLTQLSLSNTELVEDPMPTL 323 (478)
Q Consensus 291 ~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 323 (478)
++. .+.. .++|+.|+|++|.++......+
T Consensus 231 l~~---~L~~-~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 231 LAR---AARE-HPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHH---HHHH-CSSCCEEECTTSSCCHHHHHHH
T ss_pred HHH---HHHh-CCCCCEEeccCCCCCHHHHHHH
Confidence 333 3445 6788888888888765433333
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.68 E-value=4.5e-07 Score=88.54 Aligned_cols=99 Identities=19% Similarity=0.097 Sum_probs=52.6
Q ss_pred CCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceee-CCCcccccc
Q 047959 302 PPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTM-GAGAMPKLE 380 (478)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~-~~~~~~~L~ 380 (478)
+..++.+......+ ....+..+.+|+.+.+.++ +. ...... +.++.+|+.+.|.+ .++.+.. .+..+.+|+
T Consensus 275 ~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~-~I~~~a-F~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~ 346 (394)
T 4fs7_A 275 CSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VK-FIGEEA-FESCTSLVSIDLPY--LVEEIGKRSFRGCTSLS 346 (394)
T ss_dssp CTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CC-EECTTT-TTTCTTCCEECCCT--TCCEECTTTTTTCTTCC
T ss_pred ccccceeccCceee---ccccccccccccccccccc-cc-eechhh-hcCCCCCCEEEeCC--cccEEhHHhccCCCCCC
Confidence 45555554443322 1123455667777776532 11 111111 55667777777753 3555532 234567777
Q ss_pred eeEEecCCCCCCCc-cccCCCCCCCEEEEec
Q 047959 381 SLILNPCAYLRKLP-EEQWCIKSLCKLELHW 410 (478)
Q Consensus 381 ~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~ 410 (478)
.+.+..+ ++.++ ..+.+|++|+.+++..
T Consensus 347 ~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 347 NINFPLS--LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp EECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred EEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence 7777543 44443 3566777777777754
No 150
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.67 E-value=1.2e-08 Score=105.33 Aligned_cols=82 Identities=20% Similarity=0.286 Sum_probs=70.3
Q ss_pred eecccCCChhhHHHHHhHhcccCCCceechhHHHHHHHHcCCCCCChHHHHHHHHHHHHHccceeeeecCCCCcEeEEEe
Q 047959 3 QIFSVMELPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIPYNSEETAKHYLKELIHRGFIQVSKRRSGGTIKACYV 82 (478)
Q Consensus 3 ~klSY~~L~~~~k~cFl~~a~Fp~~~~i~~~~Li~~w~~~g~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~m 82 (478)
++.||+.||++.|.||++||+||+|+.|+.+.++.+|.++ .+.+..++++|+++||++... +|....|+|
T Consensus 368 l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~~~Ll~~~~---~~~~~~~~~ 437 (591)
T 1z6t_A 368 MSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNKSLLFCDR---NGKSFRYYL 437 (591)
T ss_dssp HHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSSEEEE---ETTEEEEEC
T ss_pred HHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-------HHHHHHHHHHHHhCcCeEEec---CCCccEEEE
Confidence 4679999999999999999999999999999999999653 344788999999999998654 344567999
Q ss_pred CHHHHHHHHHHh
Q 047959 83 PSIAYTSLALMA 94 (478)
Q Consensus 83 hdli~dl~~~~~ 94 (478)
|+++|++++...
T Consensus 438 H~lv~~~~~~~~ 449 (591)
T 1z6t_A 438 HDLQVDFLTEKN 449 (591)
T ss_dssp CHHHHHHHHHHT
T ss_pred cHHHHHHHHhhh
Confidence 999999998773
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.66 E-value=3.2e-07 Score=89.60 Aligned_cols=284 Identities=10% Similarity=0.041 Sum_probs=163.4
Q ss_pred ccccCCCCeEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCC--------------
Q 047959 127 ENFCKKFKHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSS-------------- 190 (478)
Q Consensus 127 ~~~~~~~~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~-------------- 190 (478)
...|..+.+|+.+.+.. .++.+.+. |.++.+|+.+++..+ ++.++. .+.++.+|+.+.+..+
T Consensus 64 ~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCC
T ss_pred HHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccc
Confidence 45566777777777753 35555444 667777777777543 444442 3455566665554332
Q ss_pred -------cCcccc-hhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCC
Q 047959 191 -------YIDHSP-EDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLS 261 (478)
Q Consensus 191 -------~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~ 261 (478)
.+..+. ..+..+.+|+.+.+..+ ....-...+..+.+|+.+.+..+- ......+.++..|+.+.+....
T Consensus 142 ~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~~- 219 (394)
T 4fs7_A 142 KEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNSL- 219 (394)
T ss_dssp SEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTTC-
T ss_pred cccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCCceEeCchhhccccccceeecCCCc-
Confidence 011111 23456677777777322 222223346667777777765443 2223345666666666554432
Q ss_pred cchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccC
Q 047959 262 YYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLE 341 (478)
Q Consensus 262 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 341 (478)
..+........+|+.+.+. ..+..+... .+.. +.+|+.+.+..+. .......+..+..++.+......+..
T Consensus 220 ---~~i~~~~~~~~~l~~i~ip--~~~~~i~~~--~f~~-~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~~ 290 (394)
T 4fs7_A 220 ---YYLGDFALSKTGVKNIIIP--DSFTELGKS--VFYG-CTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVPE 290 (394)
T ss_dssp ---CEECTTTTTTCCCCEEEEC--TTCCEECSS--TTTT-CSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEECT
T ss_pred ---eEeehhhcccCCCceEEEC--CCceecccc--cccc-cccceeEEcCCCc-ceeeccccccccccceeccCceeecc
Confidence 1111222345677777775 334444431 3344 7888888887654 22334466777888888776444332
Q ss_pred ceeEEeCCCCCcccceeEEecCCCCCceeeC-CCcccccceeEEecCCCCCCCc-cccCCCCCCCEEEEecCcHHHHHHH
Q 047959 342 RKLACVGCSSFPQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAYLRKLP-EEQWCIKSLCKLELHWPQPELRQLL 419 (478)
Q Consensus 342 ~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~~~~~~~ 419 (478)
.. +..+.+|+.+.+.+ +++.+... +..+.+|+.+.+... ++.++ ..+.+|++|+.+.+... +
T Consensus 291 ~~-----F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~-------l 354 (394)
T 4fs7_A 291 KT-----FYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS-------L 354 (394)
T ss_dssp TT-----TTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT-------C
T ss_pred cc-----cccccccccccccc--ccceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc-------c
Confidence 22 66788999999864 56666543 356789999999643 66664 36778999999988542 2
Q ss_pred HhccCCcccceeeeeeeEEe
Q 047959 420 RAFEDMEWRKSQMVEASYIA 439 (478)
Q Consensus 420 ~~~~~~~~~~i~~lp~~~~~ 439 (478)
...+...+.....+..+.+.
T Consensus 355 ~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 355 RKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp CEECTTTBTTCTTCCEEEEE
T ss_pred cEehHHHhhCCCCCCEEEEC
Confidence 22223345455566666654
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.59 E-value=5.2e-09 Score=100.49 Aligned_cols=12 Identities=8% Similarity=-0.161 Sum_probs=6.1
Q ss_pred CCCCCceEeecC
Q 047959 155 NLFYLKYLKLNI 166 (478)
Q Consensus 155 ~l~~L~~L~l~~ 166 (478)
++++|+.|.+..
T Consensus 137 ~l~~L~~L~l~~ 148 (362)
T 2ra8_A 137 KFAHFEGLFWGD 148 (362)
T ss_dssp HHTTCSEEEECC
T ss_pred hcchhhheeecC
Confidence 445555555543
No 153
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.55 E-value=9.1e-08 Score=91.78 Aligned_cols=99 Identities=18% Similarity=0.118 Sum_probs=84.4
Q ss_pred ceEeecCC-CCCccchhhhCCCCCcEEeCCC-CcCcccc-hhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCccc
Q 047959 160 KYLKLNIP-SLKCLPSLLCTLLNLQTLEMPS-SYIDHSP-EDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALH 236 (478)
Q Consensus 160 ~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~-~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 236 (478)
..++.+++ +++.+|. +..+.+|++|+|++ |.+..+| ..+..+++|++|++++|.+....|..|..+++|+.|++.+
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 45688887 8999999 99999999999996 8999998 4688999999999999988877777889999999999999
Q ss_pred CC-CCCccc-cCCCCCCcEEEEEecC
Q 047959 237 PS-SCTPDI-LGRLPNVQTLRISGDL 260 (478)
Q Consensus 237 ~~-~~~~~~-l~~l~~L~~L~l~~~~ 260 (478)
+. ...+.. +..++ |+.|++.+|.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCC
Confidence 98 555544 44444 9999999885
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.49 E-value=1.2e-08 Score=97.86 Aligned_cols=138 Identities=20% Similarity=0.251 Sum_probs=87.6
Q ss_pred HHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCccc--CCCCCCeEEEee--CcccCc
Q 047959 267 VSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLE--ELPHLEVLKLKQ--NSYLER 342 (478)
Q Consensus 267 l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~L~~--~~~~~~ 342 (478)
+...+..+++|+.|.++++..+ .++. + . .++|++|++..|.+.......+. .+|+|+.|+|+. +.+.+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~----~-~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~ 236 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK----K-P-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD 236 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS----C-B-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc----c-c-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccc
Confidence 4556667888999998874222 3442 2 3 68899999988876554444443 688999998863 222211
Q ss_pred e------eEEeCCCCCcccceeEEecCCCCCcee---eCCCcccccceeEEecCCCCC----CCccccCCCCCCCEEEEe
Q 047959 343 K------LACVGCSSFPQLKILHLKSMLWLEEWT---MGAGAMPKLESLILNPCAYLR----KLPEEQWCIKSLCKLELH 409 (478)
Q Consensus 343 ~------~~~~~~~~~~~L~~L~L~~~~~l~~l~---~~~~~~~~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~l~ 409 (478)
. .... ...+|+|++|.+.+|......+ .....+|+|+.|+++.|..-. .++.++..+++|+.|+++
T Consensus 237 ~~~~~l~~~l~-~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 237 GDMNVFRPLFS-KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp SCGGGTGGGSC-TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred hhHHHHHHHHh-cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECC
Confidence 1 0111 2458999999998864322111 112468899999998765322 134455678999999998
Q ss_pred cCc
Q 047959 410 WPQ 412 (478)
Q Consensus 410 ~c~ 412 (478)
+|.
T Consensus 316 ~n~ 318 (362)
T 2ra8_A 316 YNY 318 (362)
T ss_dssp SBB
T ss_pred CCc
Confidence 886
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.43 E-value=1.3e-07 Score=80.03 Aligned_cols=36 Identities=11% Similarity=0.194 Sum_probs=20.1
Q ss_pred CCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCc
Q 047959 303 PSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNS 338 (478)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 338 (478)
..|+.|++++|.++...+..+..+++|+.|+|++|.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 356666666666555445555555555555555553
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.39 E-value=7.3e-06 Score=79.89 Aligned_cols=269 Identities=10% Similarity=0.062 Sum_probs=134.4
Q ss_pred ccccCCCCeEeEEEecCCC---CCcCCcc-CCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCcccc-hhhh
Q 047959 127 ENFCKKFKHLRVLNLGSAV---LDQYPPG-LENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDHSP-EDIW 200 (478)
Q Consensus 127 ~~~~~~~~~L~~L~L~~~~---l~~lp~~-~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp-~~i~ 200 (478)
+..|..+.+|+.+.+..+. ++.+... |..+.+|+.+.+..+ ++.++. .+..+.+|+.+.+... +..++ ..+.
T Consensus 80 ~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~ 157 (394)
T 4gt6_A 80 SNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFS 157 (394)
T ss_dssp TTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred HHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeeccccee
Confidence 4445556666666655432 3334333 555555555554332 333332 3455566666666433 22232 2344
Q ss_pred ccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhh-HH----------
Q 047959 201 MMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSG-VS---------- 268 (478)
Q Consensus 201 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~-l~---------- 268 (478)
.+.+|+.+.+..+ ....-...+. ..+|+.+.+.... ......+..+.++.............+. +.
T Consensus 158 ~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (394)
T 4gt6_A 158 YCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYAL 235 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEE
T ss_pred cccccccccccce-eeEecccccc-ccceeEEEECCcccccccchhhhccccceecccccccccccceeecccccccccc
Confidence 5566666665222 1111111122 2345555544332 2222334555555555444331000000 00
Q ss_pred HhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeC
Q 047959 269 KSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVG 348 (478)
Q Consensus 269 ~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~ 348 (478)
........+..+.+. +.+..+... .+.. +.+|+.+.+.... .......+.++++|+.+.+. +.+.. .....
T Consensus 236 ~~~~~~~~~~~~~ip--~~v~~i~~~--aF~~-c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~-I~~~a- 306 (394)
T 4gt6_A 236 IRYPSQREDPAFKIP--NGVARIETH--AFDS-CAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITE-LPESV- 306 (394)
T ss_dssp EECCTTCCCSEEECC--TTEEEECTT--TTTT-CSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCE-ECTTT-
T ss_pred cccccccccceEEcC--CcceEcccc--eeee-cccccEEeccccc-ceecCcccccccccccccCC-Ccccc-cCcee-
Confidence 000011122222221 222222220 3444 7788888875543 22334466778889988886 22221 11112
Q ss_pred CCCCcccceeEEecCCCCCceeeC-CCcccccceeEEecCCCCCCCcc-ccCCCCCCCEEEEecCc
Q 047959 349 CSSFPQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAYLRKLPE-EQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 349 ~~~~~~L~~L~L~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~ 412 (478)
+.++.+|+.+.|.. +++.+... +..+.+|+.+.+... ++.++. .+.+|++|+.+++.+..
T Consensus 307 F~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 307 FAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred ecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCce
Confidence 67788999999974 46666433 456889999999653 666654 67889999999998865
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.25 E-value=3e-07 Score=77.78 Aligned_cols=85 Identities=7% Similarity=0.071 Sum_probs=66.8
Q ss_pred CCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceee-CCCc----ccccceeEEecCCCCCCCc-cccCCC
Q 047959 327 PHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTM-GAGA----MPKLESLILNPCAYLRKLP-EEQWCI 400 (478)
Q Consensus 327 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~-~~~~----~~~L~~L~l~~c~~l~~lp-~~l~~l 400 (478)
..|+.|++++|.+++..+.. +.++++|++|+|++|..++.... .+.. .++|+.|++++|+.+++-. ..+.++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~--L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDH--MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGG--GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred ceEeEEeCcCCCccHHHHHH--hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 47999999999988776654 67899999999999998884321 1122 4689999999999887521 346689
Q ss_pred CCCCEEEEecCcH
Q 047959 401 KSLCKLELHWPQP 413 (478)
Q Consensus 401 ~~L~~L~l~~c~~ 413 (478)
++|+.|++++|+.
T Consensus 139 ~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 139 RNLKYLFLSDLPG 151 (176)
T ss_dssp TTCCEEEEESCTT
T ss_pred CCCCEEECCCCCC
Confidence 9999999999983
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.14 E-value=1.7e-05 Score=77.20 Aligned_cols=274 Identities=11% Similarity=0.077 Sum_probs=160.9
Q ss_pred CCCCCeeeec------------CccccCCCCeEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCCccc-hhhhCCCC
Q 047959 116 SKSDHLALIH------------CENFCKKFKHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCLP-SLLCTLLN 181 (478)
Q Consensus 116 ~~~~~lr~l~------------~~~~~~~~~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~ 181 (478)
..|.+|+++. ....|..+..|+.+.+..+ ++.++.. +..+.+|+.+.+..+ +..++ ..+..+.+
T Consensus 84 ~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~ 161 (394)
T 4gt6_A 84 YNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYS 161 (394)
T ss_dssp TTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred hCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccceecccc
Confidence 5677777661 2455677777877766544 4445444 778899999999653 45444 35778899
Q ss_pred CcEEeCCCCcCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCc--------------cccC
Q 047959 182 LQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCTP--------------DILG 246 (478)
Q Consensus 182 L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~--------------~~l~ 246 (478)
|+.+.+..+ +..+........+|+.+.+..+ ........+..+.++......... .... ....
T Consensus 162 L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (394)
T 4gt6_A 162 LHTVTLPDS-VTAIEERAFTGTALTQIHIPAK-VTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYP 239 (394)
T ss_dssp CCEEECCTT-CCEECTTTTTTCCCSEEEECTT-CCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECC
T ss_pred cccccccce-eeEeccccccccceeEEEECCc-ccccccchhhhccccceecccccccccccceeecccccccccccccc
Confidence 999999765 5555554445678999998433 332333456677777766543332 0000 0111
Q ss_pred CCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCC
Q 047959 247 RLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEEL 326 (478)
Q Consensus 247 ~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 326 (478)
....+..+.+-.. ....-...+..+.+|+.+.+.. .+..+... .+.. +++|+.+.+.. .+.......+.++
T Consensus 240 ~~~~~~~~~ip~~---v~~i~~~aF~~c~~L~~i~lp~--~~~~I~~~--aF~~-c~~L~~i~l~~-~i~~I~~~aF~~c 310 (394)
T 4gt6_A 240 SQREDPAFKIPNG---VARIETHAFDSCAYLASVKMPD--SVVSIGTG--AFMN-CPALQDIEFSS-RITELPESVFAGC 310 (394)
T ss_dssp TTCCCSEEECCTT---EEEECTTTTTTCSSCCEEECCT--TCCEECTT--TTTT-CTTCCEEECCT-TCCEECTTTTTTC
T ss_pred cccccceEEcCCc---ceEcccceeeecccccEEeccc--ccceecCc--cccc-ccccccccCCC-cccccCceeecCC
Confidence 2222333332211 1111124567888899988853 33444441 4455 88999998853 3333444577889
Q ss_pred CCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceee-CCCcccccceeEEecCCCCCCCccccCCCCCCCE
Q 047959 327 PHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTM-GAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCK 405 (478)
Q Consensus 327 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~ 405 (478)
.+|+.+.|..+ +. ...... +.++.+|+.+.|.. +++.+.. .+..+++|+.+++.++... . ..+..+.+|+.
T Consensus 311 ~~L~~i~lp~~-v~-~I~~~a-F~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~~~--~-~~~~~~~~L~~ 382 (394)
T 4gt6_A 311 ISLKSIDIPEG-IT-QILDDA-FAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSRSQ--W-NAISTDSGLQN 382 (394)
T ss_dssp TTCCEEECCTT-CC-EECTTT-TTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCHHH--H-HTCBCCCCC--
T ss_pred CCcCEEEeCCc-cc-EehHhH-hhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCceee--h-hhhhccCCCCE
Confidence 99999999743 21 111112 77889999999964 4666543 3467889999999875321 1 34556788888
Q ss_pred EEEec
Q 047959 406 LELHW 410 (478)
Q Consensus 406 L~l~~ 410 (478)
+.+..
T Consensus 383 i~i~~ 387 (394)
T 4gt6_A 383 LPVAP 387 (394)
T ss_dssp -----
T ss_pred EEeCC
Confidence 87754
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.13 E-value=3.5e-07 Score=79.13 Aligned_cols=113 Identities=16% Similarity=0.143 Sum_probs=70.9
Q ss_pred cCCCCeEeEEEecCC-CCC-----cCCccCCCCCCCceEeecCCCCC-----ccchhhhCCCCCcEEeCCCCcCcc----
Q 047959 130 CKKFKHLRVLNLGSA-VLD-----QYPPGLENLFYLKYLKLNIPSLK-----CLPSLLCTLLNLQTLEMPSSYIDH---- 194 (478)
Q Consensus 130 ~~~~~~L~~L~L~~~-~l~-----~lp~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~l~~---- 194 (478)
....+.|+.|+|++| .+. .+...+...++|++|++++|.+. .+...+...++|++|++++|.+..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 355677888888888 765 34455666778888888888776 344556666778888888887644
Q ss_pred -cchhhhccccCcEEEe--eCCCCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecC
Q 047959 195 -SPEDIWMMQKLMHLNF--GSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDL 260 (478)
Q Consensus 195 -lp~~i~~l~~L~~L~l--~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~ 260 (478)
+...+...++|++|++ ++|.+..... ..+...+...++|++|++++|.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~------------------~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVE------------------MEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHH------------------HHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHH------------------HHHHHHHHhCCCcCEEeccCCC
Confidence 3455556667777777 4443322100 1122334455677777777763
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.07 E-value=7.3e-05 Score=72.30 Aligned_cols=262 Identities=12% Similarity=0.097 Sum_probs=118.2
Q ss_pred ccccCCCCeEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccC
Q 047959 127 ENFCKKFKHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKL 205 (478)
Q Consensus 127 ~~~~~~~~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L 205 (478)
+..|..+.+|+.+++..+ ++.+... |.++ +|+.+.+.. .++.++.......+|+.+.+..+ +..+........+|
T Consensus 62 ~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L~~i~lp~~-~~~i~~~~F~~~~l 137 (379)
T 4h09_A 62 EANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDLDDFEFPGA-TTEIGNYIFYNSSV 137 (379)
T ss_dssp TTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCCC
T ss_pred HHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceeccCCcccccCCCc-ccccccccccccee
Confidence 455677777777777543 5555444 5554 566665543 35555544333346777777554 33333322222345
Q ss_pred cEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC--------------CCCccccCCCCCCcEEEEEecCCcchhhHHHhc
Q 047959 206 MHLNFGSITLPAPPKNNSSPLKNLIFISALHPS--------------SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSL 271 (478)
Q Consensus 206 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--------------~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l 271 (478)
+.+.+. ......-...+..+.+++.+...... ......+.....+..+.+... ........+
T Consensus 138 ~~~~~~-~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~f 213 (379)
T 4h09_A 138 KRIVIP-KSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPST---VKTVTAYGF 213 (379)
T ss_dssp CEEEEC-TTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTT---CCEECTTTT
T ss_pred eeeecc-ceeeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccc---eeEEeeccc
Confidence 555552 22222222334445555554433222 011112223333333332221 111111223
Q ss_pred cCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCC
Q 047959 272 CQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSS 351 (478)
Q Consensus 272 ~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 351 (478)
..+.+|+.+.+. ..+..++.. .+.. +.+|+.+.+..+ ++......+.++.+|+.+.+..+ +.. ..... +.+
T Consensus 214 ~~~~~l~~i~~~--~~~~~i~~~--~f~~-~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~-i~~~a-F~~ 284 (379)
T 4h09_A 214 SYGKNLKKITIT--SGVTTLGDG--AFYG-MKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKT-VPYLL-CSG 284 (379)
T ss_dssp TTCSSCSEEECC--TTCCEECTT--TTTT-CSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSE-ECTTT-TTT
T ss_pred ccccccceeeec--cceeEEccc--cccC-CccceEEEcCCC-ccEeCccccceeehhcccccccc-cee-ccccc-ccc
Confidence 344555555553 223333321 2333 556666666443 22222334555666666666422 111 10111 455
Q ss_pred CcccceeEEecCCCCCceeeC-CCcccccceeEEecCCCCCCCcc-ccCCCCCCCEEEE
Q 047959 352 FPQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAYLRKLPE-EQWCIKSLCKLEL 408 (478)
Q Consensus 352 ~~~L~~L~L~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l 408 (478)
+++|+.+.+.+ ..++.++.. +..+.+|+.+.+... ++.++. .+.+|++|+.+.+
T Consensus 285 c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 285 CSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp CTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCC
T ss_pred ccccccccccc-cccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEE
Confidence 66666666654 344444322 244566666666432 444432 4456666666655
No 161
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.91 E-value=1.6e-06 Score=74.82 Aligned_cols=121 Identities=14% Similarity=0.024 Sum_probs=80.0
Q ss_pred CccCCCCCCCceEeecCC-CCC-----ccchhhhCCCCCcEEeCCCCcCcc-----cchhhhccccCcEEEeeCCCCCCC
Q 047959 150 PPGLENLFYLKYLKLNIP-SLK-----CLPSLLCTLLNLQTLEMPSSYIDH-----SPEDIWMMQKLMHLNFGSITLPAP 218 (478)
Q Consensus 150 p~~~~~l~~L~~L~l~~~-~i~-----~lp~~~~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~ 218 (478)
...+...++|+.|++++| .+. .+...+...++|++|++++|.+.. +...+...++|++|++++|.+...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 334566788999999888 776 355566777889999999887743 344555667788888866643321
Q ss_pred CCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEE--EecC--CcchhhHHHhccCCCCCCEEEEEecCccc
Q 047959 219 PKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRI--SGDL--SYYHSGVSKSLCQLHKLECLKLVNEGKMR 289 (478)
Q Consensus 219 ~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l--~~~~--~~~~~~l~~~l~~~~~L~~L~l~~~~~l~ 289 (478)
-. ..+...+...++|++|++ ++|. ......+...+...++|++|++++ +.+.
T Consensus 109 g~------------------~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~-n~i~ 164 (185)
T 1io0_A 109 GI------------------LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF-TQQG 164 (185)
T ss_dssp HH------------------HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC-SSHH
T ss_pred HH------------------HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccC-CCCC
Confidence 00 122344556677888888 5563 122334667777889999999987 5543
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.78 E-value=1.2e-05 Score=73.10 Aligned_cols=60 Identities=23% Similarity=0.194 Sum_probs=29.6
Q ss_pred CCCeEeEEEecCCCCCcC---CccCCCCCCCceEeecCCCCCccchhhhCCC--CCcEEeCCCCcC
Q 047959 132 KFKHLRVLNLGSAVLDQY---PPGLENLFYLKYLKLNIPSLKCLPSLLCTLL--NLQTLEMPSSYI 192 (478)
Q Consensus 132 ~~~~L~~L~L~~~~l~~l---p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~--~L~~L~l~~~~l 192 (478)
+++.|+.|+|++|.++.+ |..+..+++|++|+|++|.+..+ ..+..+. +|++|++++|.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTT
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcC
Confidence 345555555555555432 23334555555555555555543 1222333 555555555544
No 163
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.65 E-value=3.6e-05 Score=70.01 Aligned_cols=78 Identities=19% Similarity=0.199 Sum_probs=50.6
Q ss_pred CCCCCceEeecCCCCCcc---chhhhCCCCCcEEeCCCCcCcccchhhhccc--cCcEEEeeCCCCCCCCCC-------C
Q 047959 155 NLFYLKYLKLNIPSLKCL---PSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQ--KLMHLNFGSITLPAPPKN-------N 222 (478)
Q Consensus 155 ~l~~L~~L~l~~~~i~~l---p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~--~L~~L~l~~~~~~~~~~~-------~ 222 (478)
++++|+.|+|++|.+..+ |..+..+++|++|+|++|.+..+. .+..+. +|++|++++|.+...+|. .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 567788888888877743 355667788888888888777663 344444 778888877765544432 1
Q ss_pred CCCCCCCcEeC
Q 047959 223 SSPLKNLIFIS 233 (478)
Q Consensus 223 ~~~l~~L~~L~ 233 (478)
+..+++|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 34456666665
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.56 E-value=0.0012 Score=63.55 Aligned_cols=264 Identities=9% Similarity=0.086 Sum_probs=150.9
Q ss_pred ccCCCCeEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCCccchh-hhCCCCCcEEeCCCCcCcccchhhhccccCc
Q 047959 129 FCKKFKHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCLPSL-LCTLLNLQTLEMPSSYIDHSPEDIWMMQKLM 206 (478)
Q Consensus 129 ~~~~~~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~ 206 (478)
++....+|+.+.+.. .++.+++. |.++.+|+.+.+..+ ++.++.. +.++ +|+.+.+..+ +..++.......+|+
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~ 116 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLD 116 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCS
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccCCcc
Confidence 445556677777754 36666655 888999999999653 6766644 4454 6777777543 556655544455888
Q ss_pred EEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcc----------hhhHHHhccCCC
Q 047959 207 HLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYY----------HSGVSKSLCQLH 275 (478)
Q Consensus 207 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~----------~~~l~~~l~~~~ 275 (478)
.+.+..+ ....-...+.. .+|+.+.+...- ......+..+.+++...+....... .......+....
T Consensus 117 ~i~lp~~-~~~i~~~~F~~-~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (379)
T 4h09_A 117 DFEFPGA-TTEIGNYIFYN-SSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAK 194 (379)
T ss_dssp EEECCTT-CCEECTTTTTT-CCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTC
T ss_pred cccCCCc-ccccccccccc-ceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceeccccccc
Confidence 8888433 22111122333 245555444332 2223346677778777776542000 001111222334
Q ss_pred CCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCccc
Q 047959 276 KLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQL 355 (478)
Q Consensus 276 ~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L 355 (478)
.+..+.+.. ....+... .+.. ..+|+.+.+..+ +.......+..+..|+.+.+..+ +.. ..... +..+.+|
T Consensus 195 ~~~~~~~~~--~~~~i~~~--~f~~-~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~-I~~~a-F~~~~~l 265 (379)
T 4h09_A 195 TGTEFTIPS--TVKTVTAY--GFSY-GKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTS-IGSFL-LQNCTAL 265 (379)
T ss_dssp CCSEEECCT--TCCEECTT--TTTT-CSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCE-ECTTT-TTTCTTC
T ss_pred ccccccccc--ceeEEeec--cccc-ccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccE-eCccc-cceeehh
Confidence 444444332 22222210 2334 677887777544 22233445677889999998743 211 11111 6678889
Q ss_pred ceeEEecCCCCCceeeC-CCcccccceeEEecCCCCCCCc-cccCCCCCCCEEEEec
Q 047959 356 KILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAYLRKLP-EEQWCIKSLCKLELHW 410 (478)
Q Consensus 356 ~~L~L~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~ 410 (478)
+.+.+.. .++.++.. ...+++|+.+.+.++. ++.++ ..+.+|.+|+.+.+..
T Consensus 266 ~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 266 KTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp CEEEECC--CCSEECTTTTTTCTTCCEEEECCTT-CCEECTTTTTTCTTCCEEECCT
T ss_pred ccccccc--cceeccccccccccccccccccccc-cceehhhhhcCCCCCCEEEcCc
Confidence 9999864 56666543 3578999999997653 55554 4678899999999853
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.45 E-value=0.028 Score=44.79 Aligned_cols=51 Identities=24% Similarity=0.275 Sum_probs=32.1
Q ss_pred EEEecCCCCC--cCCccCCCCCCCceEeecCCCCCccchh-hhCCCCCcEEeCCCC
Q 047959 138 VLNLGSAVLD--QYPPGLENLFYLKYLKLNIPSLKCLPSL-LCTLLNLQTLEMPSS 190 (478)
Q Consensus 138 ~L~L~~~~l~--~lp~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~ 190 (478)
+++-++..++ .+|..+. .+|++|+|++|.|+.+|.. +..+++|++|+|.+|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 5566666666 6665432 2567777777777766643 455666777777666
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.36 E-value=0.0043 Score=53.23 Aligned_cols=62 Identities=16% Similarity=0.192 Sum_probs=32.6
Q ss_pred CCCCeEeEEEecCC-CCC-----cCCccCCCCCCCceEeecCCCCC-----ccchhhhCCCCCcEEeCCCCcC
Q 047959 131 KKFKHLRVLNLGSA-VLD-----QYPPGLENLFYLKYLKLNIPSLK-----CLPSLLCTLLNLQTLEMPSSYI 192 (478)
Q Consensus 131 ~~~~~L~~L~L~~~-~l~-----~lp~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~l 192 (478)
..-+.|+.|+|+++ .+. .+-+.+..-..|+.|+|++|.+. .+...+..-+.|++|+|++|.|
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 33455666666664 443 23333444456666666666555 3333344445566666666654
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.19 E-value=0.013 Score=50.31 Aligned_cols=107 Identities=16% Similarity=0.053 Sum_probs=67.8
Q ss_pred CCCCCCCceEeecCC-CCC-----ccchhhhCCCCCcEEeCCCCcCc-----ccchhhhccccCcEEEeeCCCCCC----
Q 047959 153 LENLFYLKYLKLNIP-SLK-----CLPSLLCTLLNLQTLEMPSSYID-----HSPEDIWMMQKLMHLNFGSITLPA---- 217 (478)
Q Consensus 153 ~~~l~~L~~L~l~~~-~i~-----~lp~~~~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~---- 217 (478)
+.+-+.|+.|+|+++ .|. .+...+..-..|+.|+|++|.+. .+.+.+..-+.|++|+++.|.+..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 445568888999875 665 35556666678999999988773 444556666889999998887654
Q ss_pred CCCCCCCCCCCCcEeCcccCCC---------CCccccCCCCCCcEEEEEec
Q 047959 218 PPKNNSSPLKNLIFISALHPSS---------CTPDILGRLPNVQTLRISGD 259 (478)
Q Consensus 218 ~~~~~~~~l~~L~~L~l~~~~~---------~~~~~l~~l~~L~~L~l~~~ 259 (478)
.+-..+..-+.|++|++.++.. .+...+..-+.|++|+++.+
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 2222345556788888765321 12233444455566655544
No 168
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.10 E-value=0.031 Score=44.47 Aligned_cols=53 Identities=13% Similarity=0.229 Sum_probs=43.3
Q ss_pred ceEeecCCCCC--ccchhhhCCCCCcEEeCCCCcCcccchh-hhccccCcEEEeeCCC
Q 047959 160 KYLKLNIPSLK--CLPSLLCTLLNLQTLEMPSSYIDHSPED-IWMMQKLMHLNFGSIT 214 (478)
Q Consensus 160 ~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 214 (478)
..++.++++++ .+|..+. .+|++|+|++|.|..+|.+ +..+++|+.|++++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 46788888888 8886543 4799999999999999865 5678999999997774
No 169
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=25.31 E-value=2.1e+02 Score=26.52 Aligned_cols=79 Identities=14% Similarity=0.093 Sum_probs=46.3
Q ss_pred ecccCCChhhHHHHHhHhcccC--CCceechhHHHHHHH--H---cCCCCCChHHHHHHHHHHHHHccceeeeec--CCC
Q 047959 4 IFSVMELPFHLKVCCIYLCAFP--PSIEISTEQLYQLWV--A---EGFIPYNSEETAKHYLKELIHRGFIQVSKR--RSG 74 (478)
Q Consensus 4 klSY~~L~~~~k~cFl~~a~Fp--~~~~i~~~~Li~~w~--~---~g~~~~~~~~~~~~~~~~L~~~~ll~~~~~--~~~ 74 (478)
+-+++.||.+.|.++..+|.+. .+..++..++...+. + .|. ..-.......+++.|.+.+++..... ...
T Consensus 300 ~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~ 378 (412)
T 1w5s_A 300 THELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNV-KPRGYTQYHIYLKHLTSLGLVDAKPSGRGMR 378 (412)
T ss_dssp CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCC-CCCCHHHHHHHHHHHHHTTSEEEECC-----
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHhCCCEEeecccCCCC
Confidence 3467889999999998888764 233566666555442 2 232 11123446678999999999987543 223
Q ss_pred CcEeEEEeC
Q 047959 75 GTIKACYVP 83 (478)
Q Consensus 75 g~~~~~~mh 83 (478)
|+...+++.
T Consensus 379 g~~~~~~l~ 387 (412)
T 1w5s_A 379 GRTTLFRLA 387 (412)
T ss_dssp --CCEEEEC
T ss_pred CceeEEEeC
Confidence 443344444
No 170
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=22.63 E-value=26 Score=20.55 Aligned_cols=9 Identities=22% Similarity=0.663 Sum_probs=7.8
Q ss_pred cccCCCcee
Q 047959 22 CAFPPSIEI 30 (478)
Q Consensus 22 a~Fp~~~~i 30 (478)
++||+||+|
T Consensus 30 ~mLP~GYkI 38 (39)
T 3lqv_P 30 AMFPEGYKV 38 (39)
T ss_dssp HTCCSSEEE
T ss_pred HhCCCCccc
Confidence 789999986
Done!