BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047960
(371 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q00416|SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SEN1 PE=1 SV=2
Length = 2231
Score = 174 bits (440), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 126/203 (62%), Gaps = 2/203 (0%)
Query: 2 LLSVQYRMHPHIRDFPSRHFYQGRLTDSESVINLPDEVYYKDPVLRPYVFFDVIHGRESH 61
LL VQYRMHP I FPS FYQGRL D + L +++ L PY FFD+I GR+
Sbjct: 1650 LLDVQYRMHPSISKFPSSEFYQGRLKDGPGMDILNKRPWHQLEPLAPYKFFDIISGRQEQ 1709
Query: 62 RGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNVLNS 121
++SY N++E + + L ++L + + +GII+PY+ Q++ ++ EF
Sbjct: 1710 NAKTMSYTNMEEIRVAIELVDYLFRKFDNKIDFTGKIGIISPYREQMQKMRKEFARYFGG 1769
Query: 122 EEGKDLYINTVDAFQGQERDVIIMSCVRA--SNHGVGFVADIRRMNVALTRARRALWVMG 179
K + NT+D FQGQE+++I++SCVRA + VGF+ D RRMNVALTRA+ ++WV+G
Sbjct: 1770 MINKSIDFNTIDGFQGQEKEIILISCVRADDTKSSVGFLKDFRRMNVALTRAKTSIWVLG 1829
Query: 180 NAGALTQSDDWAALIADSKARNC 202
+ +L +S W LI D+K R+C
Sbjct: 1830 HQRSLAKSKLWRDLIEDAKDRSC 1852
>sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC29A10.10c PE=3 SV=1
Length = 1944
Score = 167 bits (422), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/209 (43%), Positives = 138/209 (66%), Gaps = 6/209 (2%)
Query: 2 LLSVQYRMHPHIRDFPSRHFYQGRLTDSESVINLPDEVYYKDPVLRPYVFFDVIHGRESH 61
LLS+QYRM+P I FPS+ FY +L D ++ + +++DP L Y FF+V HG E+
Sbjct: 1578 LLSIQYRMNPEISRFPSKFFYNSKLLDGPNMSAVTSRPWHEDPQLGIYRFFNV-HGTEAF 1636
Query: 62 RGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGL-GKVTVGIITPYKLQLKCLQHEFRNVLN 120
S S NV+EA F + LYE L + ++ GK+ G++TPY+ Q++ L+ +F+
Sbjct: 1637 -SNSKSLYNVEEASFILLLYERLIQCYLNIDFEGKI--GVVTPYRSQVQQLRSQFQRKYG 1693
Query: 121 SEEGKDLYINTVDAFQGQERDVIIMSCVRAS-NHGVGFVADIRRMNVALTRARRALWVMG 179
S K L I+TVD FQGQE+D+II SCVR+S + G+GF+ D+RR+NVALTRA+ +L+++G
Sbjct: 1694 SIIFKHLDIHTVDGFQGQEKDIIIFSCVRSSMSGGIGFLQDLRRLNVALTRAKSSLYIVG 1753
Query: 180 NAGALTQSDDWAALIADSKARNCYMDMDS 208
N+ L Q D + +LI D+K R + D+ +
Sbjct: 1754 NSKPLMQEDIFYSLIEDAKTRGVWRDLSA 1782
>sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2
SV=1
Length = 818
Score = 156 bits (394), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 119/202 (58%), Gaps = 3/202 (1%)
Query: 2 LLSVQYRMHPHIRDFPSRHFYQGRLTDSESVINLPDEVYYKDPVLRPYVFFDVIHGRES- 60
+L QYRMHP IR FPS+ FY+G L D + ++K P+ FFD+ G+ES
Sbjct: 551 MLKTQYRMHPEIRSFPSKQFYEGALEDGSDIEAQTTRDWHKYRCFGPFCFFDIHEGKESQ 610
Query: 61 HRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNVLN 120
H G + S N+DE +F + +Y L + + II+PY Q+K + F+ +
Sbjct: 611 HPGATGSRVNLDEVEFVLLIYHRLVTMYPELK-SSSQLAIISPYNYQVKTFKDRFKEMFG 669
Query: 121 SEEGKDLYINTVDAFQGQERDVIIMSCVRASNHG-VGFVADIRRMNVALTRARRALWVMG 179
+E K + INTVD FQG+E+DV I SCVRA+ +G +GF+++ RRMNV +TRA+ ++ V+G
Sbjct: 670 TEAEKVVDINTVDGFQGREKDVAIFSCVRANENGQIGFLSNSRRMNVGITRAKSSVLVVG 729
Query: 180 NAGALTQSDDWAALIADSKARN 201
+A L W LI ++ RN
Sbjct: 730 SAATLKSDPLWKNLIESAEQRN 751
>sp|Q92355|SEN1_SCHPO Helicase sen1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sen1 PE=1 SV=1
Length = 1687
Score = 152 bits (384), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 119/204 (58%), Gaps = 12/204 (5%)
Query: 2 LLSVQYRMHPHIRDFPSRHFYQGRLTDSESVINLPDEVYYKDPVLRPYVFFDVIHGRESH 61
LLS+QYRMHP I FPS+ FY RL D +++ +V++ +P Y FDV G+E
Sbjct: 1440 LLSIQYRMHPDISHFPSKKFYDSRLEDGDNMAEKTQQVWHVNPKFTQYRLFDV-RGKE-R 1497
Query: 62 RGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNVLNS 121
++S N++E ++ V + + L + +G+ITPY+ QL HE R
Sbjct: 1498 TSNTMSTYNLEEVEYLVNMVDELLNKFPDVNFTG-RIGVITPYRSQL----HELRRAFKV 1552
Query: 122 EEGKDLY----INTVDAFQGQERDVIIMSCVRA-SNHGVGFVADIRRMNVALTRARRALW 176
+ GK I TVD FQGQE+D+I SCV++ S HG+GF+ D RR+NVALTRAR +L
Sbjct: 1553 KYGKSFMSTIDIQTVDGFQGQEKDIIFFSCVKSYSKHGIGFLRDFRRLNVALTRARSSLL 1612
Query: 177 VMGNAGALTQSDDWAALIADSKAR 200
++GN L D W +L+ D+ +R
Sbjct: 1613 IIGNMETLKTDDLWGSLVDDALSR 1636
>sp|Q86AS0|Y4399_DICDI Probable helicase DDB_G0274399 OS=Dictyostelium discoideum
GN=DDB_G0274399 PE=3 SV=1
Length = 967
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 116/202 (57%), Gaps = 16/202 (7%)
Query: 2 LLSVQYRMHPHIRDFPSRHFYQGRLTDSESVINLPDEV--YYKDPVLRPYVFFDVIHGRE 59
+L+ QYRMH IR FPSRHFYQ L D N+P Y+ +P P VF+D+ E
Sbjct: 651 MLTTQYRMHSLIRAFPSRHFYQDLLLDGP---NIPSRATHYHSNPFFGPLVFYDLSWSTE 707
Query: 60 SHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNVL 119
+ GG + N E K + L++ K +GII+PY+ Q+ L+ F+N
Sbjct: 708 TKPGGGSVF-NEHECKMAMYLFQLFTKVYPDEDFAS-RIGIISPYRQQVLALREIFKNY- 764
Query: 120 NSEEGKDLYINTVDAFQGQERDVIIMSCVRA---SNHGVGFVADIRRMNVALTRARRALW 176
+ I+TVD FQG+ER++II SCVRA G+GF++D+RRMNVALTR R +L
Sbjct: 765 -----PGISIDTVDGFQGREREIIIFSCVRAPVEEGAGIGFLSDVRRMNVALTRPRSSLL 819
Query: 177 VMGNAGALTQSDDWAALIADSK 198
++GN AL+ + DW LI ++
Sbjct: 820 ILGNTKALSINKDWNELIQHTQ 841
>sp|Q54I89|RENT1_DICDI Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum
GN=upf1 PE=3 SV=1
Length = 1331
Score = 131 bits (330), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 137/256 (53%), Gaps = 19/256 (7%)
Query: 3 LSVQYRMHPHIRDFPSRHFYQGRLTDSESVINLPDEVYYKDPVLRPYVFFDVIHGRESHR 62
L++QYRMHP + +FPS Y+G+L S + + + P + +FF G E
Sbjct: 768 LTIQYRMHPSLTEFPSNTSYEGQLVSELSHTDRDSQSKFPWPQPKDPMFFFNCTGSEEIS 827
Query: 63 GGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNV--LN 120
S+ N EA +C E + +G +GIITPY+ Q + + LN
Sbjct: 828 SSGTSFINTTEA--SIC--EKIVTKFLELGSLPGQIGIITPYEGQRAYITSHMQKSGKLN 883
Query: 121 SEEGKDLYINTVDAFQGQERDVIIMSCVRASNH-GVGFVADIRRMNVALTRARRALWVMG 179
E K + + +VD+FQG+E+D II+SCVR++++ G+GF+ D RR+NVALTRAR L ++G
Sbjct: 884 LELYKSIEVASVDSFQGREKDYIILSCVRSNDYQGIGFLQDPRRLNVALTRARFGLIILG 943
Query: 180 NAGALTQSDDWAALIADSKARNCYMD--MDSLPKEFSVALAAKAPGYGPLQGKIPHNARG 237
NA L++ W +LI+ K +N ++ + +L K+ V L YG QGK+P
Sbjct: 944 NAKVLSKDPLWNSLISHFKNKNVLVEGSLANL-KQSPVILQKPKKLYG--QGKLP----- 995
Query: 238 LRSAGQRHRSFDMNME 253
GQ SF+ + E
Sbjct: 996 --IPGQNSNSFNYDRE 1009
>sp|Q9FJR0|RENT1_ARATH Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana
GN=UPF1 PE=1 SV=2
Length = 1254
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 114/207 (55%), Gaps = 8/207 (3%)
Query: 3 LSVQYRMHPHIRDFPSRHFYQGRLTDSESVINLPDE-VYYKDPVLRPYVFFDVIHGRESH 61
L VQYRMHP + +FPS FY+G L + ++I + + PV +FF V G+E
Sbjct: 718 LQVQYRMHPALSEFPSNSFYEGTLQNGVTIIERQTTGIDFPWPVPNRPMFFYVQLGQEEI 777
Query: 62 RGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLK-CLQHEFRN-VL 119
SY N EA E L G+ +G+ITPY+ Q + + RN L
Sbjct: 778 SASGTSYLNRTEA----ANVEKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSL 833
Query: 120 NSEEGKDLYINTVDAFQGQERDVIIMSCVRASNH-GVGFVADIRRMNVALTRARRALWVM 178
+ K++ + +VD+FQG+E+D II+SCVR++ H G+GF+ D RR+NVALTRAR + ++
Sbjct: 834 RQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVIL 893
Query: 179 GNAGALTQSDDWAALIADSKARNCYMD 205
GN L++ W L+ K C ++
Sbjct: 894 GNPKVLSKQPLWNGLLTHYKEHECLVE 920
>sp|Q9EPU0|RENT1_MOUSE Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1
SV=2
Length = 1124
Score = 125 bits (314), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/207 (37%), Positives = 116/207 (56%), Gaps = 8/207 (3%)
Query: 3 LSVQYRMHPHIRDFPSRHFYQGRLTDSESVINLPDEVY-YKDPVLRPYVFFDVIHGRESH 61
L VQYRMHP + FPS FY+G L + + + + + ++ P +FF V G+E
Sbjct: 704 LQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEI 763
Query: 62 RGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQH--EFRNVL 119
SY N EA E + L G +GIITPY+ Q L +F L
Sbjct: 764 ASSGTSYLNRTEAAN----VEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSL 819
Query: 120 NSEEGKDLYINTVDAFQGQERDVIIMSCVRASNH-GVGFVADIRRMNVALTRARRALWVM 178
+++ +++ I +VDAFQG+E+D II+SCVRA+ H G+GF+ D RR+NVALTRAR + ++
Sbjct: 820 HTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIV 879
Query: 179 GNAGALTQSDDWAALIADSKARNCYMD 205
GN AL++ W L++ K + ++
Sbjct: 880 GNPKALSKQPLWNHLLSYYKEQKALVE 906
>sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1
SV=2
Length = 1129
Score = 124 bits (312), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 111/196 (56%), Gaps = 8/196 (4%)
Query: 3 LSVQYRMHPHIRDFPSRHFYQGRLTDSESVINLPDEVY-YKDPVLRPYVFFDVIHGRESH 61
L VQYRMHP + FPS FY+G L + + + + + ++ P +FF V G+E
Sbjct: 709 LQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEI 768
Query: 62 RGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQH--EFRNVL 119
SY N EA E + L G +GIITPY+ Q L +F L
Sbjct: 769 ASSGTSYLNRTEAAN----VEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSL 824
Query: 120 NSEEGKDLYINTVDAFQGQERDVIIMSCVRASNH-GVGFVADIRRMNVALTRARRALWVM 178
+++ +++ I +VDAFQG+E+D II+SCVRA+ H G+GF+ D RR+NVALTRAR + ++
Sbjct: 825 HTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIV 884
Query: 179 GNAGALTQSDDWAALI 194
GN AL++ W L+
Sbjct: 885 GNPKALSKQPLWNHLL 900
>sp|Q9VYS3|RENT1_DROME Regulator of nonsense transcripts 1 homolog OS=Drosophila
melanogaster GN=Upf1 PE=1 SV=2
Length = 1180
Score = 124 bits (312), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 112/206 (54%), Gaps = 7/206 (3%)
Query: 3 LSVQYRMHPHIRDFPSRHFYQGRLTDSESVINLPDEVYYKDPVLRPYVFFDVIHGRESHR 62
L VQYRMHP + FPS FY+G L + + ++ + P +FF V G+E
Sbjct: 679 LEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLKLDFPWPQPERPMFFLVTQGQEEIA 738
Query: 63 GGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQH--EFRNVLN 120
G S+ N EA E + G+ +GIITPY+ Q L +++ L+
Sbjct: 739 GSGTSFLNRTEAAN----VEKITTRFLKAGIKPEQIGIITPYEGQRAYLVQYMQYQGSLH 794
Query: 121 SEEGKDLYINTVDAFQGQERDVIIMSCVRASN-HGVGFVADIRRMNVALTRARRALWVMG 179
S +++ I +VDAFQG+E+D+IIMSCVR++ G+GF+ D RR+NVALTRA+ + ++G
Sbjct: 795 SRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDPRRLNVALTRAKFGIIIVG 854
Query: 180 NAGALTQSDDWAALIADSKARNCYMD 205
N L + W L+ K R ++
Sbjct: 855 NPKVLAKQQLWNHLLNFYKDRKVLVE 880
>sp|Q9HEH1|RENT1_NEUCR Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=2E4.130 PE=3 SV=1
Length = 1093
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 112/207 (54%), Gaps = 8/207 (3%)
Query: 3 LSVQYRMHPHIRDFPSRHFYQGRLTDSESVIN-LPDEVYYKDPVLRPYVFFDVIHGRESH 61
L VQYRMHP + +FPS FY+G L + + L +V + PV + F G E
Sbjct: 683 LKVQYRMHPCLSEFPSNMFYEGSLQNGVTAAERLRKDVDFPWPVPETPMMFWSNLGNEEI 742
Query: 62 RGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNV--L 119
SY N EA E + G+ +G+ITPY+ Q + + +N
Sbjct: 743 SASGTSYLNRTEAAN----VEKIVTRFFKAGVKPADIGVITPYEGQRSYIVNTMQNTGTF 798
Query: 120 NSEEGKDLYINTVDAFQGQERDVIIMSCVRAS-NHGVGFVADIRRMNVALTRARRALWVM 178
E +++ + +VDAFQG+E+D I++SCVR++ N G+GF++D RR+NVALTRA+ L ++
Sbjct: 799 KKESYREVEVASVDAFQGREKDFIVLSCVRSNENQGIGFLSDPRRLNVALTRAKYGLVII 858
Query: 179 GNAGALTQSDDWAALIADSKARNCYMD 205
GN L + + W L+ K + C ++
Sbjct: 859 GNPKVLCKHELWHHLLVHFKDKKCLVE 885
>sp|Q98TR3|RENT1_TAKRU Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes
GN=rent1 PE=3 SV=1
Length = 1097
Score = 119 bits (298), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 115/207 (55%), Gaps = 9/207 (4%)
Query: 3 LSVQYRMHPHIRDFPSRHFYQGRLTDSESVINLPDEVY-YKDPVLRPYVFFDVIHGRESH 61
L VQYRMHP + FPS FY+G L + + + + + ++ P +FF V G+E
Sbjct: 679 LQVQYRMHPALSAFPSNIFYEGSLQNGVTAGDRIKKGFDFQWPQPEKPMFFYVTQGQEEI 738
Query: 62 RGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQH--EFRNVL 119
SY N EA E + L G +GIITPY+ Q L +F L
Sbjct: 739 ASSGTSYLNRTEAAN----VEKITTRLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSL 794
Query: 120 NSEEGKDLYINTVDAFQGQERDVIIMSCVRASNH-GVGFVADIRRMNVALTRARRALWVM 178
+++ + + I +VDAFQG+E+D II+SCVRA+ H G+GF+ D RR+NVALTRA+ + ++
Sbjct: 795 HTKLYQ-VEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAKYGVIIV 853
Query: 179 GNAGALTQSDDWAALIADSKARNCYMD 205
GN AL++ W L+ + K + ++
Sbjct: 854 GNPKALSKQPLWNNLLNNYKEQKVLVE 880
>sp|A2AKX3|SETX_MOUSE Probable helicase senataxin OS=Mus musculus GN=Setx PE=2 SV=1
Length = 2646
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 118/207 (57%), Gaps = 21/207 (10%)
Query: 1 MLLSVQYRMHPHIRDFPSRHFYQ-----GRLTDSESVINLPDEVYYKDPVLRPYVFFDVI 55
+ L++QYRMHP I FPS + Y RLT+S I E ++ PY+ FDV
Sbjct: 2228 LQLTIQYRMHPDICLFPSNYVYNKNLKTNRLTES---IRCSSEWPFQ-----PYLVFDV- 2278
Query: 56 HGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEF 115
G S R + SY NV E K + + + +++ K + +GIIT YK Q +Q +
Sbjct: 2279 -GDGSERRDNDSYINVQEIKLVMEIIKLIKEKRKDISFR--NIGIITHYKAQKTMIQKDL 2335
Query: 116 RNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRAS--NHGVGFVADIRRMNVALTRARR 173
+ + + ++TVDAFQG+++D II++CVRAS +GF+A ++R+NV +TRA+
Sbjct: 2336 EKEFDKKGPAE--VDTVDAFQGRQKDCIIVTCVRASAVQGSIGFLASLQRLNVTITRAKY 2393
Query: 174 ALWVMGNAGALTQSDDWAALIADSKAR 200
+L+++G+ L ++ W LI D++ R
Sbjct: 2394 SLFILGHLRTLMENQHWYELIQDAQKR 2420
>sp|Q09820|RENT1_SCHPO ATP-dependent helicase upf1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=upf1 PE=3 SV=2
Length = 925
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 119/228 (52%), Gaps = 23/228 (10%)
Query: 3 LSVQYRMHPHIRDFPSRHFYQGRL----TDSESVINLPDEVYYK-DPVLRPYVFFDVIHG 57
L VQYRMHP + +FPS FY+G L T SE + D + + D L Y F G
Sbjct: 626 LVVQYRMHPCLSEFPSNTFYEGTLQNGVTTSERIARHVDFPWIQPDSPLMFYANF----G 681
Query: 58 RESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRN 117
+E S+ N EA C E + T + +GI+TPY Q + +N
Sbjct: 682 QEELSASGTSFLNRTEA--STC--EKIVTTFLRSNVLPEQIGIVTPYDGQRSYIVQYMQN 737
Query: 118 VLNSEEGKDLY----INTVDAFQGQERDVIIMSCVRASNH-GVGFVADIRRMNVALTRAR 172
N KDLY + +VDAFQG+E+D II+SCVR+S H G+GFV D RR+NVALTRA+
Sbjct: 738 --NGSMQKDLYKAVEVASVDAFQGREKDFIILSCVRSSEHQGIGFVNDPRRLNVALTRAK 795
Query: 173 RALWVMGNAGALTQSDDWAALIADSKARNCYMD--MDSLPKEFSVALA 218
+ V+GN L + W + K + ++ ++SL K FS+ L
Sbjct: 796 YGVIVLGNPKVLAKHALWYHFVLHCKEKGYLVEGTLNSLQK-FSLTLT 842
>sp|Q57568|Y104_METJA Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0104 PE=3 SV=1
Length = 663
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 112/208 (53%), Gaps = 25/208 (12%)
Query: 2 LLSVQYRMHPHIRDFPSRHFYQGRLTDSESVINLP----------DEVYYKDPVLRPYVF 51
+L +QYRM+ I +FP++ FY +L ESV N+ DEV +D + V
Sbjct: 459 ILEIQYRMNEKIMEFPNKMFYNNKLKADESVKNITLLDLVKEEEIDEVD-RDIINEIPVQ 517
Query: 52 FDVIHGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCL 111
F + G E S SY N++EA E + + +K + K+ +ITPY Q++ L
Sbjct: 518 FINVEGIERKDKESPSYYNIEEA-------EKVLEIVKKLVKYKIPTNVITPYDAQVRYL 570
Query: 112 QHEFRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRA 171
+ F E D+ +NTVD FQG+E + I++S VR N G F+ D+RR+NVA+TRA
Sbjct: 571 RRLF-----EEHNIDIEVNTVDGFQGRENEAIVISFVRTKNFG--FLKDLRRLNVAITRA 623
Query: 172 RRALWVMGNAGALTQSDDWAALIADSKA 199
+R L ++GN L Q + +I +K+
Sbjct: 624 KRKLILIGNENLLKQDKVYNEMIKWAKS 651
>sp|Q7Z333|SETX_HUMAN Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4
Length = 2677
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 114/202 (56%), Gaps = 11/202 (5%)
Query: 1 MLLSVQYRMHPHIRDFPSRHFYQGRLTDSESVINLPDEVYYKDPVLRPYVFFDVIHGRES 60
+ L+VQYRMHP I FPS + Y L + + D +PY+ FDV G S
Sbjct: 2252 LQLTVQYRMHPDICLFPSNYVYNRNLKTNRQTEAI---RCSSDWPFQPYLVFDV--GDGS 2306
Query: 61 HRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNVLN 120
R + SY NV E K + + + ++ K + +GIIT YK Q +Q + +
Sbjct: 2307 ERRDNDSYINVQEIKLVMEIIKLIKDKRKDVSFR--NIGIITHYKAQKTMIQKDLDKEFD 2364
Query: 121 SEEGKDLYINTVDAFQGQERDVIIMSCVRASN--HGVGFVADIRRMNVALTRARRALWVM 178
+ + ++TVDAFQG+++D +I++CVRA++ +GF+A ++R+NV +TRA+ +L+++
Sbjct: 2365 RKGPAE--VDTVDAFQGRQKDCVIVTCVRANSIQGSIGFLASLQRLNVTITRAKYSLFIL 2422
Query: 179 GNAGALTQSDDWAALIADSKAR 200
G+ L ++ W LI D++ R
Sbjct: 2423 GHLRTLMENQHWNQLIQDAQKR 2444
>sp|P30771|NAM7_YEAST ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NAM7 PE=1 SV=1
Length = 971
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 119/216 (55%), Gaps = 16/216 (7%)
Query: 3 LSVQYRMHPHIRDFPSRHFYQGRLTDSESVI--NLPDEVYYKDPVLRPYVFFDVIHGRES 60
L VQYRM+P++ +FPS FY+G L + ++ +P+ + P+ + F +GRE
Sbjct: 634 LEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNS-KFPWPIRGIPMMFWANYGREE 692
Query: 61 HRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNVLN 120
S+ N EA C E + L G+ +G+ITPY+ Q + + +N
Sbjct: 693 ISANGTSFLNRIEAMN--C--ERIITKLFRDGVKPEQIGVITPYEGQRAYILQYMQ--MN 746
Query: 121 SEEGKDLYIN----TVDAFQGQERDVIIMSCVRAS-NHGVGFVADIRRMNVALTRARRAL 175
KDLYI +VDAFQG+E+D II+SCVRA+ +GF+ D RR+NV LTRA+ L
Sbjct: 747 GSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRAKYGL 806
Query: 176 WVMGNAGALTQSDDWAALIADSKARNCYMD--MDSL 209
++GN +L ++ W L+ + + C ++ +D+L
Sbjct: 807 VILGNPRSLARNTLWNHLLIHFREKGCLVEGTLDNL 842
>sp|O76512|RENT1_CAEEL Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans
GN=smg-2 PE=1 SV=1
Length = 1069
Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 114/203 (56%), Gaps = 10/203 (4%)
Query: 3 LSVQYRMHPHIRDFPSRHFYQGRLTD--SESVINLPDEVYYKDPVLRPYVFFDVIHGRES 60
L VQYRMHP + +FPS FY G L + +E+ ++ ++ +P FF G E
Sbjct: 672 LQVQYRMHPVLSEFPSNVFYDGSLQNGVTENDRHMTGVDWHWPKPNKP-AFFWHCSGSEE 730
Query: 61 HRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEF--RNV 118
S+ N EA E L L G+ +G+IT Y+ Q + + +
Sbjct: 731 LSASGTSFLNRTEAAN----VEKLVSKLIKAGVQPHQIGVITSYEGQRSFIVNYMHTQGT 786
Query: 119 LNSEEGKDLYINTVDAFQGQERDVIIMSCVRASN-HGVGFVADIRRMNVALTRARRALWV 177
LNS+ +++ I +VDAFQG+E+D II++CVR+++ G+GF++D RR+NVA+TRA+ L +
Sbjct: 787 LNSKLYENVEIASVDAFQGREKDYIIVTCVRSNDILGIGFLSDPRRLNVAITRAKYGLVL 846
Query: 178 MGNAGALTQSDDWAALIADSKAR 200
+GNA L + D W LI K++
Sbjct: 847 VGNAKVLARHDLWHELINHYKSK 869
>sp|Q6ZU11|YD002_HUMAN Uncharacterized protein FLJ44066 OS=Homo sapiens PE=2 SV=1
Length = 926
Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 108/203 (53%), Gaps = 17/203 (8%)
Query: 1 MLLSVQYRMHPHIRDFPSRHFYQGRLTDSESVINLPDEVYYKDPVLR--PYVFFDVIHGR 58
+LL QYR HP I + FY+G L + + I + P+L P + F + G
Sbjct: 693 ILLRTQYRCHPAISAIANDLFYKGALMNGVTEIE-------RSPLLEWLPTLCFYNVKGL 745
Query: 59 ESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNV 118
E + S+ NV EA F + L ++L + G+ +G+IT YK Q+ L H V
Sbjct: 746 EQIERDN-SFHNVAEATFTL----KLIQSLIASGIAGSMIGVITLYKSQMYKLCHLLSAV 800
Query: 119 -LNSEEGKDLYINTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRARRALWV 177
+ + K + ++TVDAFQG E+++II+SCVR VGF+ +RMNVALTR +R L +
Sbjct: 801 DFHHPDIKTVQVSTVDAFQGAEKEIIILSCVRTRQ--VGFIDSEKRMNVALTRGKRHLLI 858
Query: 178 MGNAGALTQSDDWAALIADSKAR 200
+GN L ++ W +I + R
Sbjct: 859 VGNLACLRKNQLWGRVIQHCEGR 881
>sp|P23249|MOV10_MOUSE Putative helicase MOV-10 OS=Mus musculus GN=Mov10 PE=1 SV=2
Length = 1004
Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 108/221 (48%), Gaps = 32/221 (14%)
Query: 7 YRMHPHIRDFPSRHFYQGRLTDSESVIN---------LPDEVYYKDPVLRPYVFFDVIHG 57
YR HP I D P++ +Y G L V++ LP + + P +F V+ G
Sbjct: 733 YRSHPTILDIPNQLYYDGELQACADVVDRERFCRWEGLPQQGF-------PIIFHGVM-G 784
Query: 58 RESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVT---VGIITPYKLQLK----C 110
++ G S S+ N +EA + L G +++ VG+I+PY+ Q++ C
Sbjct: 785 KDEREGNSPSFFNPEEAATVTSYLKQLLAPSSKKGKARLSPRNVGVISPYRKQVEKIRYC 844
Query: 111 LQHEFRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRAS--------NHGVGFVADIR 162
+ R + ++ KDL + +V+ FQGQER VI++S VR+S + +GF+ + +
Sbjct: 845 ITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPK 904
Query: 163 RMNVALTRARRALWVMGNAGALTQSDDWAALIADSKARNCY 203
R NVA+TRA+ L V+GN L DW + K Y
Sbjct: 905 RFNVAVTRAKALLIVVGNPLLLGHDPDWKTFLEFCKENGGY 945
>sp|P34243|HCS1_YEAST DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HCS1 PE=1
SV=1
Length = 683
Score = 98.6 bits (244), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 110/195 (56%), Gaps = 17/195 (8%)
Query: 2 LLSVQYRMHPHIRDFPSRHFYQGRLTDSESV-----INLP--DEVYYKDP--VLRPYVFF 52
L+VQYRM+ I +FPS Y G+L +V I+LP D +D P +++
Sbjct: 464 FLNVQYRMNQKIMEFPSHSMYNGKLLADATVANRLLIDLPTVDATPSEDDDDTKIPLIWY 523
Query: 53 DVI--HGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKC 110
D +E+ ++ +E + + + EH++ L+S + + ++G+I+PY Q+
Sbjct: 524 DTQGDEFQETADEATILGSKYNEGEIAI-VKEHIE-NLRSFNVPENSIGVISPYNAQVSH 581
Query: 111 LQHEFRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASNH-GVGFVADIRRMNVALT 169
L+ + L + D+ I+TVD FQG+E+DVII+S VR++ VGF+ + RR+NVA+T
Sbjct: 582 LKKLIHDEL---KLTDIEISTVDGFQGREKDVIILSLVRSNEKFEVGFLKEERRLNVAMT 638
Query: 170 RARRALWVMGNAGAL 184
R RR L V+GN L
Sbjct: 639 RPRRQLVVVGNIEVL 653
>sp|Q0V8H6|MOV10_BOVIN Putative helicase MOV-10 OS=Bos taurus GN=MOV10 PE=2 SV=1
Length = 1003
Score = 98.2 bits (243), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 108/221 (48%), Gaps = 32/221 (14%)
Query: 7 YRMHPHIRDFPSRHFYQGRLTDSESVIN---------LPDEVYYKDPVLRPYVFFDVIHG 57
YR HP I D P+R +Y G L V++ LP + + P +F V+ G
Sbjct: 732 YRSHPTILDVPNRLYYDGELQACADVVDRERFCRWEGLPRQDF-------PIIFHGVM-G 783
Query: 58 RESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVT---VGIITPYKLQLK----C 110
++ G S S+ N +EA + L G +++ VG+I+PY+ Q++ C
Sbjct: 784 KDEREGNSPSFFNPEEAATVTSYLKQLLAPSSKKGKARLSPRSVGVISPYRKQVEKIRYC 843
Query: 111 LQHEFRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRAS--------NHGVGFVADIR 162
+ + + ++ KDL + +V+ FQGQER VI++S VR+S + +GF+ + +
Sbjct: 844 ITKLDKQLRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPK 903
Query: 163 RMNVALTRARRALWVMGNAGALTQSDDWAALIADSKARNCY 203
R NVA+TRA+ L V+GN L DW + K Y
Sbjct: 904 RFNVAVTRAKALLIVVGNPLLLGHDPDWKVFLEFCKENGGY 944
>sp|Q9HCE1|MOV10_HUMAN Putative helicase MOV-10 OS=Homo sapiens GN=MOV10 PE=1 SV=2
Length = 1003
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 109/221 (49%), Gaps = 32/221 (14%)
Query: 7 YRMHPHIRDFPSRHFYQGRLTDSESVIN---------LPDEVYYKDPVLRPYVFFDVIHG 57
YR HP I D P++ +Y+G L V++ LP + + P +F V+ G
Sbjct: 732 YRSHPTILDIPNQLYYEGELQACADVVDRERFCRWAGLPRQGF-------PIIFHGVM-G 783
Query: 58 RESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVT---VGIITPYKLQLK----C 110
++ G S S+ N +EA + L G +++ VG+I+PY+ Q++ C
Sbjct: 784 KDEREGNSPSFFNPEEAATVTSYLKLLLAPSSKKGKARLSPRSVGVISPYRKQVEKIRYC 843
Query: 111 LQHEFRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRAS--------NHGVGFVADIR 162
+ R + ++ KDL + +V+ FQGQER VI++S VR+S + +GF+ + +
Sbjct: 844 ITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPK 903
Query: 163 RMNVALTRARRALWVMGNAGALTQSDDWAALIADSKARNCY 203
R NVA+TRA+ L ++GN L DW + K Y
Sbjct: 904 RFNVAVTRAKALLIIVGNPLLLGHDPDWKVFLEFCKENGGY 944
>sp|P32644|ECM32_YEAST Putative ATP-dependent RNA helicase ECM32 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ECM32 PE=1 SV=1
Length = 1121
Score = 95.1 bits (235), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 102/231 (44%), Gaps = 53/231 (22%)
Query: 1 MLLSVQYRMHPHIRDFPSRHFYQGRLTDSESVINLPDEVYYKDPVLRPYVFFDVIHGRES 60
++L QYRMHP I +FP + Y G L D + DE V P F+ G ES
Sbjct: 878 LMLDTQYRMHPKISEFPIKKIYNGELKDG-----VTDEQKAWPGVQHPLFFYQCDLGPES 932
Query: 61 HRGGS------VSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCL--- 111
+ +Y+N E V + + +Q + + +G+ITPY Q L
Sbjct: 933 RVRSTQRDIVGFTYENKHEC---VEIVKIIQILMLDKKVPLEEIGVITPYSAQRDLLSDI 989
Query: 112 --------------QHEF-------------------RNVLNSEEGKDLYINTVDAFQGQ 138
Q E+ NV+N G L++ TVD+FQG
Sbjct: 990 LTKNVVINPKQISMQQEYDEIELFNAAGSQGTAGSLQNNVINIING--LHVATVDSFQGH 1047
Query: 139 ERDVIIMSCVRA-SNHGVGFVADIRRMNVALTRARRALWVMGNAGALTQSD 188
E+ II SCVR + + +GF+ D RR+NVALTRA+ L V+GN L + D
Sbjct: 1048 EKSFIIFSCVRNNTENKIGFLRDKRRLNVALTRAKHGLIVVGNKNVLRKGD 1098
>sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1
SV=1
Length = 1002
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 122/247 (49%), Gaps = 39/247 (15%)
Query: 3 LSVQYRMHPHIRDFPSRHFYQGRLT----DSESVIN----LPDEVYYKDPVLRPYVFFDV 54
L YR HP I D PS+ FY G L D++SV+ LP++ + P VF+
Sbjct: 617 LVKNYRCHPEILDLPSKLFYDGELVASKEDTDSVLASLNFLPNKEF-------PMVFYG- 668
Query: 55 IHGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHE 114
I G + G + S+ N E + E +++ + + + +G+ITPY+ Q+ +
Sbjct: 669 IQGCDEREGNNPSWFNRIEIS---KVIETIKRLTANDCVQEEDIGVITPYRQQV----MK 721
Query: 115 FRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRAS--------NHGVGFVADIRRMNV 166
+ VL+ + ++ + +V+ FQGQE+ VII+S VR++ + +GF+++ RR NV
Sbjct: 722 IKEVLDRLDMTEVKVGSVEQFQGQEKQVIIISTVRSTIKHNEFDRAYCLGFLSNPRRFNV 781
Query: 167 ALTRARRALWVMGNAGALTQSDDWAALIADSKARNCYMDMDSLPKE-------FSVALAA 219
A+TRA L ++GN + + +W L+ N Y LP++ F ++
Sbjct: 782 AITRAISLLVIIGNPHIICKDMNWNKLLWRCVDNNAYQGC-GLPEQEEFVEEPFKQEGSS 840
Query: 220 KAPGYGP 226
P Y P
Sbjct: 841 NGPQYPP 847
>sp|Q8QHA5|DNA2_XENLA DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus
laevis GN=dna2 PE=1 SV=1
Length = 1053
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 112/231 (48%), Gaps = 38/231 (16%)
Query: 3 LSVQYRMHPHIRDFPSRHFYQGRLT-----DSESVINLP---------------DEVYYK 42
L+VQYRM+ I ++ Y+GRL S +V+ LP + ++ K
Sbjct: 824 LTVQYRMNSKIMALSNKLVYEGRLECASDRVSNAVVQLPHIKTLLLELEFRESQESMWIK 883
Query: 43 DPVLRP-----YVFFDVIHGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVT 97
D VL P ++ + I E+ G +S N EAK L HL K G
Sbjct: 884 D-VLEPSNPVCFLNTEKIPALETEEKGGIS--NWIEAK----LVFHLTKLYLKAGCRPSD 936
Query: 98 VGIITPYKLQLKCLQHEFRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASNHGV-- 155
+GII PY+ QLK + + F NS + +NTVD +QG+++ VII+S VR++ G
Sbjct: 937 IGIIAPYRQQLKMISNYF----NSLSASAVEVNTVDKYQGRDKSVIIVSFVRSNIDGKLG 992
Query: 156 GFVADIRRMNVALTRARRALWVMGNAGALTQSDDWAALIADSKARNCYMDM 206
+ D RR+NVALTRA+ L ++G L + D LI + K N D+
Sbjct: 993 DLLKDWRRLNVALTRAKHKLIMLGCVPTLNRFDCLEQLICNLKTENQIYDL 1043
>sp|F6QXW0|DNA2_XENTR DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus
tropicalis GN=dna2 PE=3 SV=1
Length = 1048
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 115/231 (49%), Gaps = 38/231 (16%)
Query: 3 LSVQYRMHPHIRDFPSRHFYQGRLT-----DSESVINLP---------------DEVYYK 42
L+VQYRM+ I ++ Y+GRL S +V+ LP + ++ K
Sbjct: 819 LTVQYRMNSQIMALSNKLVYEGRLECASDRVSNAVVKLPHIKTLLLELEFRESQESMWIK 878
Query: 43 DPVLRP-----YVFFDVIHGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVT 97
D VL P ++ + I E+ G +S N EAK CL + K G
Sbjct: 879 D-VLEPSNPVCFLNTEKIPALETEEKGGIS--NWIEAKLVFCLTKLFLKA----GCRPSD 931
Query: 98 VGIITPYKLQLKCLQHEFRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASNHG-VG 156
+GII PY+ QLK + + F NS + +NTVD +QG+++ VII+S VR++ G +G
Sbjct: 932 IGIIAPYRQQLKVISNYF----NSLSASAVEVNTVDKYQGRDKSVIIVSFVRSNIDGKLG 987
Query: 157 -FVADIRRMNVALTRARRALWVMGNAGALTQSDDWAALIADSKARNCYMDM 206
+ D RR+NVALTRA+ L ++G L++ LI K++N D+
Sbjct: 988 DLLKDWRRLNVALTRAKHKLIMLGCVPTLSRFLCLEQLICHLKSKNHIYDL 1038
>sp|O94247|HCS1_SCHPO DNA polymerase alpha-associated DNA helicase A
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hcs1 PE=3 SV=1
Length = 660
Score = 89.0 bits (219), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 112/217 (51%), Gaps = 16/217 (7%)
Query: 2 LLSVQYRMHPHIRDFPSRHFYQGRLTDSESV-----INLPDEVYYKDPVLRPYVFFDVI- 55
L++QYRMH I FPS FY +L +E V ++L + V + P F+D +
Sbjct: 446 FLNIQYRMHELISKFPSDTFYDSKLVPAEEVKKRLLMDL-ENVEETELTDSPIYFYDTLG 504
Query: 56 HGRESHRGGSVS--YQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQH 113
+ +E R + YQ+ + + + L GL + ++TPY Q+ ++
Sbjct: 505 NYQEDDRSEDMQNFYQDSKSNHWEAQIVSYHISGLLEAGLEAKDIAVVTPYNAQVALIRQ 564
Query: 114 EFRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASN-HGVGFVADIRRMNVALTRAR 172
L E+G ++ + +VD QG+E++ II S VR+++ VGF+A+ RR+NVA+TR +
Sbjct: 565 -----LLKEKGIEVEMGSVDKVQGREKEAIIFSLVRSNDVREVGFLAEKRRLNVAITRPK 619
Query: 173 RALWVMGNAGALTQSDDWAALIADSKARNCY-MDMDS 208
R L V+G++ + + ++ D N MD+D+
Sbjct: 620 RHLCVIGDSNTVKWASEFFHQWVDFLEENAIVMDIDA 656
>sp|Q1LXK5|M10B2_DANRE Putative helicase mov-10-B.2 OS=Danio rerio GN=mov10b.2 PE=3 SV=1
Length = 1015
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 105/210 (50%), Gaps = 21/210 (10%)
Query: 3 LSVQYRMHPHIRDFPSRHFYQGRLTDSESVINLPDEVYYKDPVLRPY-VFFDVIHGRESH 61
L + YR HP+I + P+R FY G L I+ ++ + + V F + G++
Sbjct: 755 LIMNYRSHPYILEVPNRLFYDGELKACADEISSNQYCMWEHLPSKGFPVIFHGVPGKDER 814
Query: 62 RGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKV---TVGIITPYKLQLKCLQH----- 113
S S+ N+ E V + L T G+ ++ +GII PY+ Q++ ++
Sbjct: 815 ESNSPSFFNIYEINILVDYLKKLLLTQPKKGISRIFPKDIGIIAPYRKQVEKIKRAIDAD 874
Query: 114 -EFRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRAS--------NHGVGFVADIRRM 164
+F++ + + +L + +V+ FQGQER VI++S VR+S +GF+ + +R
Sbjct: 875 KDFQDYMGID---NLKVGSVEEFQGQERKVIMVSTVRSSVKYISLDETFNIGFLKNEKRF 931
Query: 165 NVALTRARRALWVMGNAGALTQSDDWAALI 194
NVA+TRA+ L ++GN L + W I
Sbjct: 932 NVAVTRAKSLLIMVGNPMILRTDESWGRFI 961
>sp|Q9BXT6|M10L1_HUMAN Putative helicase Mov10l1 OS=Homo sapiens GN=MOV10L1 PE=1 SV=1
Length = 1211
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 105/218 (48%), Gaps = 17/218 (7%)
Query: 3 LSVQYRMHPHIRDFPSRHFYQGRL---TDSESVINLPDEVYYKDPVLRPYVFFDVIHGRE 59
L YR H + PSR FY L D V +L + K P + F + G E
Sbjct: 968 LVKNYRSHEALLMLPSRLFYHRELEVCADPTVVTSLLG--WEKLPKKGFPLIFHGVRGSE 1025
Query: 60 SHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNVL 119
+ G S S+ N EA V Y L S + +G+ITPY+ Q++ ++ RNV
Sbjct: 1026 AREGKSPSWFNPAEA-VQVLRYCCLLAHSISSQVSASDIGVITPYRKQVEKIRILLRNV- 1083
Query: 120 NSEEGKDLYINTVDAFQGQERDVIIMSCVRASN-------HGVGFVADIRRMNVALTRAR 172
+ D+ + +V+ FQGQE VII+S VR++ + +GF+++ +R NVA+TR +
Sbjct: 1084 ---DLMDIKVGSVEEFQGQEYLVIIISTVRSNEDRFEDDRYFLGFLSNSKRFNVAITRPK 1140
Query: 173 RALWVMGNAGALTQSDDWAALIADSKARNCYMDMDSLP 210
L V+GN L + + AL+ S YM D P
Sbjct: 1141 ALLIVLGNPHVLVRDPCFGALLEYSITNGVYMGCDLPP 1178
>sp|Q9EQN5|SMBP2_RAT DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1
SV=1
Length = 988
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 96/185 (51%), Gaps = 18/185 (9%)
Query: 2 LLSVQYRMHPHIRDFPSRHFYQGRLTDSESVI-----NLPDEVYYKDPVLRPYVFFDVIH 56
+L+VQYRMH I + S Y G+LT SV +LP V + P + D
Sbjct: 436 MLAVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLLKDLPG-VADTEETSVPLLLIDTAG 494
Query: 57 G--RESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHE 114
E S S N E + V L H+Q L G+ + +I PY LQ+ L+
Sbjct: 495 CGLLELEEEDSQSKGNPGEVRL-VTL--HIQ-ALVDAGVQAGDIAVIAPYNLQVDLLRQS 550
Query: 115 FRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASNHG-VGFVADIRRMNVALTRARR 173
N + +L I +VD FQG+E++ +I++ VR++ G VGF+A+ RR+NVA+TRARR
Sbjct: 551 LSN-----KHPELEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVAVTRARR 605
Query: 174 ALWVM 178
+ V+
Sbjct: 606 HVAVI 610
>sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1
SV=1
Length = 989
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 95/185 (51%), Gaps = 18/185 (9%)
Query: 2 LLSVQYRMHPHIRDFPSRHFYQGRLTDSESVI-----NLPDEVYYKDPVLRPYVFFDVIH 56
+L+VQYRMH I + S Y G+LT SV +LP V + P + D
Sbjct: 436 MLTVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLLKDLPG-VADTEETSVPLLLIDTAG 494
Query: 57 G--RESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHE 114
E S S N E + + H+Q L G+ + +I PY LQ+ L+
Sbjct: 495 CGLLELDEEDSQSKGNPGEVRL---VTLHIQ-ALVDAGVHAGDIAVIAPYNLQVDLLRQS 550
Query: 115 FRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASNHG-VGFVADIRRMNVALTRARR 173
N + +L I +VD FQG+E++ +I++ VR++ G VGF+A+ RR+NVA+TRARR
Sbjct: 551 LSN-----KHPELEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVAVTRARR 605
Query: 174 ALWVM 178
+ V+
Sbjct: 606 HVAVI 610
>sp|Q99MV5|M10L1_MOUSE Putative helicase Mov10l1 OS=Mus musculus GN=Mov10l1 PE=1 SV=1
Length = 1187
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 108/221 (48%), Gaps = 18/221 (8%)
Query: 3 LSVQYRMHPHIRDFPSRHFYQGRL---TDSESVINLPDEVYYKDPVLRPYVFFDVIHGRE 59
L YR H + PSR FY L D + V +L + K P + F + G E
Sbjct: 970 LVKNYRSHSALLALPSRLFYHRELEVCADPKVVTSLLG--WEKLPRKGFPLIFHGVRGNE 1027
Query: 60 SHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNVL 119
+ G S S+ + EA V Y L S + +G+ITPY+ Q++ ++ RNV
Sbjct: 1028 AREGRSPSWFSPAEA-VQVMRYCCLLARSVSSQVSSKDIGVITPYRKQVEKIKILLRNV- 1085
Query: 120 NSEEGKDLYINTVDAFQGQERDVIIMSCVRASN-------HGVGFVADIRRMNVALTRAR 172
+ D+ + +V+ FQGQE VI++S VR++ + +GF+++ +R NVA+TR +
Sbjct: 1086 ---DLTDIKVGSVEEFQGQEYLVIVISTVRSNEDRFEDDRYFLGFLSNSKRFNVAITRPK 1142
Query: 173 RALWVMGNAGALTQSDDWAALIADSKARNCYMDMDSLPKEF 213
L ++GN L + + AL+ S + Y D LP E
Sbjct: 1143 ALLIILGNPHVLVRDPCFGALLEYSVSNGVYTGCD-LPPEL 1182
>sp|Q9P2E3|ZNFX1_HUMAN NFX1-type zinc finger-containing protein 1 OS=Homo sapiens GN=ZNFX1
PE=1 SV=2
Length = 1918
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 101/202 (50%), Gaps = 19/202 (9%)
Query: 3 LSVQYRMHPHIRDFPSRHFYQGRLTDSESVINLPDEVYYKDPVLRPYVFFDVIHGRESHR 62
L+ Q+RM P I + H YQ L + SV+ Y K + +FF + E
Sbjct: 1069 LNYQHRMCPEIARLLTPHIYQD-LENHPSVLK-----YEKIKGVSSNLFFVEHNFPEQEI 1122
Query: 63 GGSVSYQNVDEAKFGV--CLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNVLN 120
S+QN EA F V C Y Q+ L S + I+T Y QL CL R ++
Sbjct: 1123 QEGKSHQNQHEAHFVVELCKYFLCQEYLPSQ------ITILTTYTGQLFCL----RKLMP 1172
Query: 121 SEEGKDLYINTVDAFQGQERDVIIMSCVRASNHG-VGFVADIRRMNVALTRARRALWVMG 179
++ + ++ VD +QG+E D+I++S VR++ G VGF+ R+ VAL+RA++ ++ +G
Sbjct: 1173 AKTFAGVRVHVVDKYQGEENDIILLSLVRSNQEGKVGFLQISNRICVALSRAKKGMYCIG 1232
Query: 180 NAGALTQSDDWAALIADSKARN 201
N L + W+ +I + N
Sbjct: 1233 NMQMLAKVPLWSKIIHTLRENN 1254
>sp|Q1LXK4|M10B1_DANRE Putative helicase mov-10-B.1 OS=Danio rerio GN=mov10b.1 PE=2 SV=2
Length = 1013
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 99/204 (48%), Gaps = 17/204 (8%)
Query: 7 YRMHPHIRDFPSRHFYQGRLTDSESVINLPDEVYYKDPVLR--PYVFFDVIHGRESHRGG 64
YR HP I P+ FY L I+ ++ R P +F V+ G++
Sbjct: 754 YRSHPSILKVPNELFYDNELKACADEISSRQYCTWEHLPKRGFPVIFHGVV-GKDEREST 812
Query: 65 SVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVT---VGIITPYKLQLKCLQHEFR--NVL 119
S S+ N E + + L T G+ K++ +GII PY+ Q++ ++ + L
Sbjct: 813 SPSFFNTSEIDKIMDYLKKLLLTQAKKGIAKISPKDIGIIAPYRKQVEKIRQAIKIHREL 872
Query: 120 NSEEG-KDLYINTVDAFQGQERDVIIMSCVRASNH--------GVGFVADIRRMNVALTR 170
S G ++L + +V+ FQGQER VII+S VR+S +GF+ + +R NVA+TR
Sbjct: 873 KSLSGIEELKVGSVEEFQGQERKVIIVSTVRSSKEHIILDDKFNIGFLKNEKRFNVAVTR 932
Query: 171 ARRALWVMGNAGALTQSDDWAALI 194
A+ L ++GN L + W +
Sbjct: 933 AKALLIMVGNPIILRTDEIWGRFM 956
>sp|P40694|SMBP2_MOUSE DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1
Length = 993
Score = 81.6 bits (200), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 97/188 (51%), Gaps = 18/188 (9%)
Query: 2 LLSVQYRMHPHIRDFPSRHFYQGRLTDSESVI-----NLPDEVYYKDPVLRPYVFFDVIH 56
+L+VQYRMH I + S Y G+ T SV +LP V + P + D
Sbjct: 436 MLTVQYRMHQAIMCWASEAMYHGQFTSHPSVAGHLLKDLPG-VTDTEETRVPLLLIDTAG 494
Query: 57 G--RESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHE 114
E S S N E + V L H+Q L G+ + +I PY LQ+ L+
Sbjct: 495 CGLLELEEEDSQSKGNPGEVRL-VTL--HIQ-ALVDAGVQAGDIAVIAPYNLQVDLLRQS 550
Query: 115 FRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASNHG-VGFVADIRRMNVALTRARR 173
N + +L I +VD FQG+E++ ++++ VR++ G VGF+A+ RR+NVA+TRARR
Sbjct: 551 LSN-----KHPELEIKSVDGFQGREKEAVLLTFVRSNRKGEVGFLAEDRRINVAVTRARR 605
Query: 174 ALWVMGNA 181
+ V+ ++
Sbjct: 606 HVAVICDS 613
>sp|Q8R151|ZNFX1_MOUSE NFX1-type zinc finger-containing protein 1 OS=Mus musculus GN=Znfx1
PE=2 SV=3
Length = 1909
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 100/202 (49%), Gaps = 19/202 (9%)
Query: 3 LSVQYRMHPHIRDFPSRHFYQGRLTDSESVINLPDEVYYKDPVLRPYVFFDVIHGRESHR 62
L+ Q+RM P I + H YQ L + SV+ Y + + +FF + E
Sbjct: 1062 LNYQHRMRPEIARLLTPHIYQD-LENHPSVLK-----YEQIKGVSSNLFFVEHNFPEQEI 1115
Query: 63 GGSVSYQNVDEAKFGV--CLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNVLN 120
S+QN EA F V C Y Q+ L S + I+T Y QL CL R ++
Sbjct: 1116 QEGKSHQNQHEAHFVVELCQYLLCQEYLPSQ------ITILTTYTGQLFCL----RKLMP 1165
Query: 121 SEEGKDLYINTVDAFQGQERDVIIMSCVRASNHG-VGFVADIRRMNVALTRARRALWVMG 179
+ + ++ VD +QG+E D+I++S VR++ G VGF+ R+ VAL+RA++ ++ +G
Sbjct: 1166 VKTFAGIKVHVVDKYQGEENDIILLSLVRSNQEGKVGFLQIPNRICVALSRAKKGMYCIG 1225
Query: 180 NAGALTQSDDWAALIADSKARN 201
N L + W+ +I + N
Sbjct: 1226 NMQMLAKVPLWSRIIHTLRENN 1247
>sp|E1BMP7|DNA2_BOVIN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Bos taurus
GN=DNA2 PE=3 SV=3
Length = 1061
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 112/233 (48%), Gaps = 37/233 (15%)
Query: 3 LSVQYRMHPHIRDFPSRHFYQGRL-----TDSESVINLPD------EV-----YYKDPVL 46
L+VQYRM+ I ++ Y+G+L + +VINLP+ E+ Y ++P L
Sbjct: 823 LTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLPNFKDVKLELEFYADYSENPWL 882
Query: 47 -------RPYVFFDV--IHGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVT 97
P F + + E G VS N+ EAK V L K G
Sbjct: 883 IAAFEPNNPVCFLNTHKVPAPEQVEKGGVS--NIMEAKLVVFLTSVFIKA----GCKPSD 936
Query: 98 VGIITPYKLQLKCLQHEFRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASNHGV-- 155
+GII PY+ QLK + ++L + +NTVD +QG+++ ++++S VR++ G
Sbjct: 937 IGIIAPYRQQLKVIS----DLLAQSSVGMVEVNTVDRYQGRDKSIVVVSFVRSNEDGTLG 992
Query: 156 GFVADIRRMNVALTRARRALWVMGNAGALTQSDDWAALIADSKARNCYMDMDS 208
+ D RR+NVA+TRA+ L ++G +L++ L+ + +D+ S
Sbjct: 993 ELLKDWRRLNVAITRAKHKLILLGCVPSLSRYPPLRKLLNHLNSEKLIIDLPS 1045
>sp|Q6ZQJ5|DNA2_MOUSE DNA replication ATP-dependent helicase/nuclease DNA2 OS=Mus musculus
GN=Dna2 PE=2 SV=2
Length = 1062
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 110/233 (47%), Gaps = 37/233 (15%)
Query: 3 LSVQYRMHPHIRDFPSRHFYQGRLT-----DSESVINLPD--------EVY--YKDP--- 44
L+VQYRM+ I ++ Y G+L + +V+ LP+ ++Y Y D
Sbjct: 824 LTVQYRMNRKIMSLSNKLTYAGKLECGSDRVANAVLALPNLKDARLSLQLYADYSDSPWL 883
Query: 45 --VLRP-----YVFFDVIHGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVT 97
VL P ++ D + E G VS NV EA+ V L T G
Sbjct: 884 AGVLEPDNPVCFLNTDKVPAPEQVENGGVS--NVTEARLIV----FLTSTFIKAGCSPSD 937
Query: 98 VGIITPYKLQLKCLQHEFRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASNHGV-- 155
+G+I PY+ QL+ + ++L + +NTVD +QG+++ +I++S VR++ G
Sbjct: 938 IGVIAPYRQQLRIIS----DLLARSSVGMVEVNTVDKYQGRDKSLILVSFVRSNEDGTLG 993
Query: 156 GFVADIRRMNVALTRARRALWVMGNAGALTQSDDWAALIADSKARNCYMDMDS 208
+ D RR+NVALTRA+ L ++G+ +L + L A +D+ S
Sbjct: 994 ELLKDWRRLNVALTRAKHKLILLGSVSSLKRFPPLGTLFDHLNAEQLILDLPS 1046
>sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3
Length = 993
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 92/186 (49%), Gaps = 22/186 (11%)
Query: 3 LSVQYRMHPHIRDFPSRHFYQGRLTDSESVI-----NLPDEVYYKDPVLRPYVFFDVIHG 57
L+VQYRMH I + S Y G+LT SV +LP V + P + D
Sbjct: 438 LTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPG-VAATEETGVPLLLVDTAGC 496
Query: 58 RESHRGGSVSYQNVDEAKFG----VCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQH 113
G + DE G V L + L G+ + +++PY LQ+ L+
Sbjct: 497 ------GLFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQVDLLRQ 550
Query: 114 EFRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASNHG-VGFVADIRRMNVALTRAR 172
+ +L I +VD FQG+E++ +I+S VR++ G VGF+A+ RR+NVA+TRAR
Sbjct: 551 SLVH-----RHPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRAR 605
Query: 173 RALWVM 178
R + V+
Sbjct: 606 RHVAVI 611
>sp|Q5ZKD7|MOV10_CHICK Putative helicase MOV-10 OS=Gallus gallus GN=MOV10 PE=2 SV=1
Length = 967
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 102/207 (49%), Gaps = 28/207 (13%)
Query: 7 YRMHPHIRDFPSRHFYQGRLTDSESVINLPDE-----VYYKDPVLRPYVFFDVIHGRESH 61
YR H I P+ FY L E + PD + + P + F + G +
Sbjct: 727 YRSHKAILKVPNELFYDSELKAYEG--SEPDVRNFYCTWEELPNRGVPIIFHGVCGEDER 784
Query: 62 RGGSVSYQNVDEAKFGVCLYEHLQKTLKSMG------LGKVTVGIITPYKLQLKCLQHEF 115
S S+ N E + V ++LQK L+S G + +GII+PY+ Q++ ++
Sbjct: 785 EAKSPSFFNTAEIEVVV---QYLQKLLQSQGRRGCPTISPKEIGIISPYRKQVEKIRLAI 841
Query: 116 RN---VLNS-EEGKDLYINTVDAFQGQERDVIIMSCVRASNH--------GVGFVADIRR 163
+ VL + + L + +V+ FQGQER VI++S VR+ + +GF+ + +R
Sbjct: 842 TSKDPVLRALPDIGQLKVGSVEEFQGQERRVILISTVRSCSEYLQLDQTFRLGFLKNPKR 901
Query: 164 MNVALTRARRALWVMGNAGALTQSDDW 190
+NVALTRA+ L V+GNA L++ W
Sbjct: 902 LNVALTRAKALLIVVGNAAVLSKDPHW 928
>sp|D3ZG52|DNA2_RAT DNA replication ATP-dependent helicase/nuclease DNA2 OS=Rattus
norvegicus GN=Dna2 PE=3 SV=1
Length = 1059
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 102/207 (49%), Gaps = 35/207 (16%)
Query: 3 LSVQYRMHPHIRDFPSRHFYQGRLT-----DSESVINLPD------EVY--YKD-PVL-- 46
L++QYRM+ I ++ Y+G+L + +VI LP+ E Y Y D P L
Sbjct: 823 LTIQYRMNRKIMSLSNKLTYEGKLECGSDRVANAVITLPNLKDVRLEFYADYSDNPWLAG 882
Query: 47 -----RPYVFF--DVIHGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVG 99
P F D + E G VS NV EA+ V L T G +G
Sbjct: 883 VFEPDNPVCFLNTDKVPAPEQIENGGVS--NVTEARLIV----FLTSTFIKAGCSPSDIG 936
Query: 100 IITPYKLQLKCLQHEFRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASNHGV--GF 157
II PY+ QL+ + ++L + +NTVD +QG+++ +I++S VR++ G
Sbjct: 937 IIAPYRQQLRTIT----DLLARSSVGMVEVNTVDKYQGRDKSLILVSFVRSNEDGTLGEL 992
Query: 158 VADIRRMNVALTRARRALWVMGNAGAL 184
+ D RR+NVA+TRA+ L ++G+ +L
Sbjct: 993 LKDWRRLNVAITRAKHKLILLGSVSSL 1019
>sp|P51530|DNA2_HUMAN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Homo sapiens
GN=DNA2 PE=1 SV=3
Length = 1060
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 106/236 (44%), Gaps = 44/236 (18%)
Query: 3 LSVQYRMHPHIRDFPSRHFYQGRL-----TDSESVINLPDEVYYKDPVLR---------- 47
L+VQYRM+ I ++ Y+G+L + +VINL ++KD L
Sbjct: 823 LTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLR---HFKDVKLELEFYADYSDN 879
Query: 48 -----------PYVFF--DVIHGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLG 94
P F D + E G VS NV EAK V L K G
Sbjct: 880 PWLMGVFEPNNPVCFLNTDKVPAPEQVEKGGVS--NVTEAKLIVFLTSIFVKA----GCS 933
Query: 95 KVTVGIITPYKLQLKCLQHEFRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASNHG 154
+GII PY+ QLK + + E +NTVD +QG+++ ++++S VR++ G
Sbjct: 934 PSDIGIIAPYRQQLKIINDLLARSIGMVE-----VNTVDKYQGRDKSIVLVSFVRSNKDG 988
Query: 155 -VG-FVADIRRMNVALTRARRALWVMGNAGALTQSDDWAALIADSKARNCYMDMDS 208
VG + D RR+NVA+TRA+ L ++G +L L+ + +D+ S
Sbjct: 989 TVGELLKDWRRLNVAITRAKHKLILLGCVPSLNCYPPLEKLLNHLNSEKLIIDLPS 1044
>sp|Q6J5K9|ARMI_DROME Probable RNA helicase armi OS=Drosophila melanogaster GN=armi PE=2
SV=3
Length = 1274
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 67/125 (53%), Gaps = 19/125 (15%)
Query: 98 VGIITPYKLQLKCLQHEFRNVLNSEEGKDLY---INTVDAFQGQERDVIIMSCVRASNH- 153
+GIITPY+ Q+K L+ F G D+ I +V+ FQGQERD+I++S VR+S
Sbjct: 1131 IGIITPYQKQVKMLRSMFI-------GTDVVMPKIGSVEEFQGQERDIILISTVRSSEEI 1183
Query: 154 -------GVGFVADIRRMNVALTRARRALWVMGNAGALTQSDDWAALIADSKARNCYMDM 206
+GFV +R+NVA++RAR + + GN L + W LI N Y
Sbjct: 1184 LRMDARFSLGFVRCSKRLNVAVSRARAMMIIFGNPHLLAVDECWRQLILFCVKNNAYFGC 1243
Query: 207 DSLPK 211
D LP+
Sbjct: 1244 D-LPQ 1247
>sp|Q9URU2|DNA2_SCHPO DNA replication ATP-dependent helicase/nuclease dna2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dna2 PE=1 SV=2
Length = 1397
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 102/216 (47%), Gaps = 36/216 (16%)
Query: 3 LSVQYRMHPHIRDFPSRHFYQGRLTDSESVIN--------------LPDE---VYYKDPV 45
L +QYRM+ I S Y G L I+ LPD +++ + +
Sbjct: 1127 LRLQYRMNEDINSLSSELIYGGNLVCGSKTISQKKLILPKAHLSDGLPDSSSSLHWVNKL 1186
Query: 46 LRP---YVFF--DVIHGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGI 100
+ P +FF D I G ES N+ E L E + G+ + ++GI
Sbjct: 1187 INPSHSVIFFNTDDILGVESKTN------NILENHTEAFLIEQAVSSFLERGVKQSSIGI 1240
Query: 101 ITPYKLQLKCLQHEFRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRA-SNHGVG-FV 158
I+ YK Q++ L ++ E INTVD +QG+++D+I++S VR+ S + VG +
Sbjct: 1241 ISIYKSQVELLSKNLKSFTEIE------INTVDRYQGRDKDIILISFVRSNSKNLVGELL 1294
Query: 159 ADIRRMNVALTRARRALWVMGNAGALTQSDDWAALI 194
D R+NVAL+RA+ + G+ L+ S+ + L+
Sbjct: 1295 RDWHRLNVALSRAKVKCIMFGSLSTLSSSNIVSHLL 1330
>sp|O74465|HRR1_SCHPO Helicase required for RNAi-mediated heterochromatin assembly 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hrr1 PE=1 SV=2
Length = 999
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 94/194 (48%), Gaps = 15/194 (7%)
Query: 3 LSVQYRMHPHIRDFPSRHFYQGRLTDSESVINLPDEVYYKDPVLRPYVFFDVIHGRESHR 62
L++Q RMHP IR S + L+D E P P + F + H R
Sbjct: 775 LTMQRRMHPQIRRLVSSVYED--LSDYEITKYWPS-----IPGMGEIRRFFLTHSRIEDN 827
Query: 63 GGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNVLNSE 122
G S N+ EA+ V +L G+ + +T Y Q ++ LN E
Sbjct: 828 DGFASKINLFEAQMLVQFAVYLINN----GVEPQKITCLTFYAAQKDLIERLLSESLNRE 883
Query: 123 EGKDLYINTVDAFQGQERDVIIMSCVRASNHG-VGFVADIRRMNVALTRARRALWVMGNA 181
+ + + TVD +QG+E DV+++S VR ++ VGF++ R+ V+L+RARR L++ GNA
Sbjct: 884 K-HFIKVATVDGYQGEENDVVLLSLVRNNDRTEVGFLSSPHRVCVSLSRARRGLFIFGNA 942
Query: 182 GALTQSDD--WAAL 193
+ +S+ W A+
Sbjct: 943 QLVAESNPLWWDAI 956
>sp|Q5ZKG3|DNA2_CHICK DNA replication ATP-dependent helicase/nuclease DNA2 OS=Gallus
gallus GN=DNA2 PE=2 SV=2
Length = 992
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 89/189 (47%), Gaps = 31/189 (16%)
Query: 3 LSVQYRMHPHIRDFPSRHFYQGRL-----TDSESVINLPDEVYYKDPVLRPYVFFDVIHG 57
L+VQYRM+ I ++ Y+G+L S + NLP+ K
Sbjct: 792 LTVQYRMNSKIMSLSNKLVYEGKLECGSEKVSNATANLPNLKMLK--------------- 836
Query: 58 RESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRN 117
E + V E VC + G +GII+PY+ QLK + +
Sbjct: 837 LEFADASKTWLKEVLEPDKPVCFL-----NTEKAGCRPSDIGIISPYRHQLKVIT----D 887
Query: 118 VLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASN-HGVG-FVADIRRMNVALTRARRAL 175
++ + + +NT+D +QG+++ +II+S VR SN +G + D RR+NVA+TRA+ L
Sbjct: 888 LMARLKENRVEVNTIDKYQGRDKSIIIVSFVRNSNDENLGALLKDWRRLNVAITRAKHKL 947
Query: 176 WVMGNAGAL 184
++G +L
Sbjct: 948 IMVGCVPSL 956
>sp|Q8CFQ3|AQR_MOUSE Intron-binding protein aquarius OS=Mus musculus GN=Aqr PE=2 SV=2
Length = 1481
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 18/151 (11%)
Query: 68 YQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNVLNSEEGKDL 127
YQN+ EA++ V L+ ++ +G + I+T Y Q +H R+++N G +
Sbjct: 1202 YQNLGEAEYVVALFMYM----CLLGYPADKISILTTYNGQ----KHLIRDIINRRCGNNP 1253
Query: 128 YI------NTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRARRALWVMGNA 181
I TVD FQGQ+ D I++S VR VG + D+RR+ VA++RAR L++
Sbjct: 1254 LIGRPNKVTTVDRFQGQQNDYILLSLVRT--RAVGHLRDVRRLVVAMSRARLGLYIFARV 1311
Query: 182 GALTQSDDWAALIADSKARNCYMDMDSLPKE 212
+ + AR ++ + +P E
Sbjct: 1312 SLFQNCFELTPAFSQLTARPLHLHI--IPTE 1340
>sp|O60306|AQR_HUMAN Intron-binding protein aquarius OS=Homo sapiens GN=AQR PE=1 SV=4
Length = 1485
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 18/151 (11%)
Query: 68 YQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNVLNSEEGKDL 127
YQN+ EA++ V L+ ++ +G + I+T Y Q +H R+++N G +
Sbjct: 1198 YQNLGEAEYVVALFMYM----CLLGYPADKISILTTYNGQ----KHLIRDIINRRCGNNP 1249
Query: 128 YI------NTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRARRALWVMGNA 181
I TVD FQGQ+ D I++S VR VG + D+RR+ VA++RAR L++
Sbjct: 1250 LIGRPNKVTTVDRFQGQQNDYILLSLVRT--RAVGHLRDVRRLVVAMSRARLGLYIFARV 1307
Query: 182 GALTQSDDWAALIADSKARNCYMDMDSLPKE 212
+ + AR ++ + +P E
Sbjct: 1308 SLFQNCFELTPAFSQLTARPLHLHI--IPTE 1336
>sp|Q9BYK8|HELZ2_HUMAN Helicase with zinc finger domain 2 OS=Homo sapiens GN=HELZ2 PE=1 SV=6
Length = 2649
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 93/224 (41%), Gaps = 36/224 (16%)
Query: 2 LLSVQYRMHPHIRDFPSRHFYQGRLTDSESVINLPDEVYYKDPVLRPYVFFDVIHGRE-- 59
+L QYRMH I FPS FY+ +L + + P + + P V F + G E
Sbjct: 2420 MLDTQYRMHEGICAFPSVAFYKSKLKTWQGLRRPPSVLGHAGKESCP-VIFGHVQGHERS 2478
Query: 60 ----SHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVT----VGIITPYKLQLKCL 111
+ G S N++E V + K + LG+ + ++TPY Q
Sbjct: 2479 LLVSTDEGNENSKANLEEVAEVV-------RITKQLTLGRTVEPQDIAVLTPYNAQAS-- 2529
Query: 112 QHEFRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASNHG--------------VGF 157
E L E + ++++ QG E +++S VR +GF
Sbjct: 2530 --EISKALRREGIAGVAVSSITKSQGSEWRYVLVSTVRTCAKSDLDQRPTKSWLKKFLGF 2587
Query: 158 VADIRRMNVALTRARRALWVMGNAGALTQSDDWAALIADSKARN 201
V D ++NVA+TRA+ L ++G+ L W +L+ +A+
Sbjct: 2588 VVDPNQVNVAVTRAQEGLCLIGDHLLLRCCPLWRSLLDFCEAQQ 2631
Score = 36.6 bits (83), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 85/220 (38%), Gaps = 25/220 (11%)
Query: 7 YRMHPHIRDFPSRHFYQGRLTDSESVINLPDEVYYKDPVLRPYVFFDVIHGRESHRGGSV 66
YR I F SRHFY + + +P P P +F V G
Sbjct: 743 YRCTDAIVSFISRHFYVAKGNPIHARGKVPPH-----PRHYPLMFCHVA-GSPDRDMSMA 796
Query: 67 SYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGI-ITPYKLQLKCLQHEFRNVLNSEEGK 125
S+ N+ E V + T S G+ I + + Q+ L+ E R +
Sbjct: 797 SWLNLAEIAQVVEKVQEAYNTWPSCWGGREQRCICVVSHGAQVSALRQELRR-------R 849
Query: 126 DLYINTVDAFQ---GQERDVIIMSCVRASNHGVG-------FVADIRRMNVALTRARRAL 175
DL +V +F+ G++ V+++S V + F D R +N LTRA+ L
Sbjct: 850 DLGQVSVGSFEILPGRQFRVVVLSTVHTCQSLLSPGALAPEFFTDARVLNTVLTRAQSQL 909
Query: 176 WVMGNAGALTQSDDWAALIADSKARNCYMDMDSLPKEFSV 215
V+G+A AL S + +S R C P+ S+
Sbjct: 910 VVVGDAVALC-SFGACGKLWESFIRECVERHSVCPEGLSM 948
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147,811,465
Number of Sequences: 539616
Number of extensions: 6510337
Number of successful extensions: 13067
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 12846
Number of HSP's gapped (non-prelim): 117
length of query: 371
length of database: 191,569,459
effective HSP length: 119
effective length of query: 252
effective length of database: 127,355,155
effective search space: 32093499060
effective search space used: 32093499060
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)