Query 047960
Match_columns 371
No_of_seqs 268 out of 1497
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 08:11:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047960.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047960hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w36d2 c.37.1.19 (D:361-606) 97.6 1.3E-05 9.6E-10 72.1 3.4 55 126-184 172-226 (246)
2 g1qhh.1 c.37.1.19 (A:,B:,C:,D: 97.6 0.00024 1.8E-08 70.3 12.6 57 125-181 529-593 (623)
3 d1w36b2 c.37.1.19 (B:486-880) 96.7 0.0002 1.5E-08 68.0 1.8 56 126-181 250-334 (395)
4 d1uaaa2 c.37.1.19 (A:308-640) 96.4 0.00066 4.8E-08 60.9 3.3 59 124-182 242-307 (333)
5 d1pjra2 c.37.1.19 (A:319-651) 95.6 0.0016 1.2E-07 58.8 1.6 59 124-182 238-304 (333)
6 d1w36c2 c.37.1.19 (C:348-817) 93.2 0.57 4.1E-05 43.3 13.8 77 125-201 310-412 (470)
7 d1vsra_ c.52.1.15 (A:) Very sh 83.3 0.072 5.3E-06 42.5 -1.1 82 239-320 11-110 (134)
8 d1uaaa1 c.37.1.19 (A:2-307) DE 75.0 1.5 0.00011 37.6 5.1 46 90-135 41-86 (306)
9 g1qhh.1 c.37.1.19 (A:,B:,C:,D: 71.4 1.6 0.00012 41.6 4.7 47 88-135 49-95 (623)
10 d1pjra2 c.37.1.19 (A:319-651) 71.3 2.8 0.00021 36.2 6.0 44 71-117 12-55 (333)
11 d1pjra1 c.37.1.19 (A:1-318) DE 47.7 8.5 0.00062 32.9 4.7 47 88-135 49-95 (318)
12 d1em8a_ c.128.1.1 (A:) DNA pol 38.9 72 0.0053 24.2 8.7 36 75-117 23-58 (147)
13 d1uaaa2 c.37.1.19 (A:308-640) 36.9 11 0.00082 31.7 3.6 44 71-117 14-57 (333)
14 d1g47a1 g.39.1.3 (A:1-35) Pinc 31.5 5.1 0.00037 23.6 0.1 21 325-346 15-35 (35)
15 d1whza_ d.50.3.2 (A:) Hypothet 25.3 7.1 0.00052 26.7 0.0 16 290-305 12-27 (70)
16 d1pzta_ c.68.1.2 (A:) beta 1,4 21.8 16 0.0011 31.6 1.7 72 95-185 48-126 (271)
No 1
>d1w36d2 c.37.1.19 (D:361-606) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}
Probab=97.60 E-value=1.3e-05 Score=72.05 Aligned_cols=55 Identities=27% Similarity=0.216 Sum_probs=44.6
Q ss_pred CeEEccccCCCCccccEEEEEccccCCCCccCCCCCCchhhhhHhhcccEEEEeecccc
Q 047960 126 DLYINTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRARRALWVMGNAGAL 184 (371)
Q Consensus 126 ~i~V~TVd~fQG~ErDVIIiS~vrs~~~~~gfl~d~rRLNVAlSRAK~~liVvGn~~~L 184 (371)
.-...|||..||.|.|.||+-+.... ..+.+.+.|.||+||||+.++|+|+...|
T Consensus 172 ~ayA~TiHkaQGse~~~v~~~l~~~~----~~~~~r~l~YtaiTRAk~~~~l~~~~~~l 226 (246)
T d1w36d2 172 TTWAMTVHKSQGSEFDHAALILPSQR----TPVVTRELVYTAVTRARRRLSLYADERIL 226 (246)
T ss_dssp SCSEEETTTTTTCCBSEEEEECCSSC----CSSSCHHHHHHHHTTBSSCEEEECCTTHH
T ss_pred hheeccHHHhccCCCCcceeccCccc----ccccchhhHHHHHhhhhCeEEEEECHHHH
Confidence 34677999999999999998764332 23567788999999999999999987653
No 2
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=97.56 E-value=0.00024 Score=70.27 Aligned_cols=57 Identities=21% Similarity=0.207 Sum_probs=39.4
Q ss_pred CCeEEccccCCCCccccEEEEEccccCC-CCccCCCC-------CCchhhhhHhhcccEEEEeec
Q 047960 125 KDLYINTVDAFQGQERDVIIMSCVRASN-HGVGFVAD-------IRRMNVALTRARRALWVMGNA 181 (371)
Q Consensus 125 ~~i~V~TVd~fQG~ErDVIIiS~vrs~~-~~~gfl~d-------~rRLNVAlSRAK~~liVvGn~ 181 (371)
..|.|.|+|..-|.|+|+||+.-..... +....+.+ .|.+.||+||||+.|+|+.+.
T Consensus 529 ~~V~l~TiH~aKGlE~D~Vii~~~~~~~~P~~~~~~~~~~~~EErRLlYVA~TRA~~~L~i~~~~ 593 (623)
T g1qhh.1 529 DAVMLMTLHAAKGLEFPVVFLIGMEEGIFPHNRSLEDDDEMEEERRLAYVGITRAEEELVLTSAQ 593 (623)
T ss_dssp CCEEEEEGGGGTTCCEEEEEECCCBTBTTTBTTTTTCHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CceEEEEHhhhhcccCCEEEEeccccCCCCccccCCCchhHHHHHHHHHHHHhHHhheeEEEEeC
Confidence 3588999999999999999985332211 00001111 245899999999999998654
No 3
>d1w36b2 c.37.1.19 (B:486-880) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=96.72 E-value=0.0002 Score=67.96 Aligned_cols=56 Identities=21% Similarity=0.169 Sum_probs=39.8
Q ss_pred CeEEccccCCCCccccEEEEEccccCCCCcc-C-------------C---------------CCCCchhhhhHhhcccEE
Q 047960 126 DLYINTVDAFQGQERDVIIMSCVRASNHGVG-F-------------V---------------ADIRRMNVALTRARRALW 176 (371)
Q Consensus 126 ~i~V~TVd~fQG~ErDVIIiS~vrs~~~~~g-f-------------l---------------~d~rRLNVAlSRAK~~li 176 (371)
.|.|.|||..-|.|+++||+-........-+ + . .+.|.|.||+||||+.|+
T Consensus 250 aV~ImTIHkSKGLEfpvVflp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Ee~RLlYVAlTRAk~~L~ 329 (395)
T d1w36b2 250 LVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCS 329 (395)
T ss_dssp SEEEEETTTTSSCCEEEEEETTTTCCCCCCSCEEECTTTCCEEEESSCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred eEEEEchhhhccCCCCEEEEccCccCCCccccccccccccccccCcccchhHHHHHHHHHHHHHHhhhhhhHhhHhhhhE
Confidence 5999999999999999999954422211100 0 0 113679999999999999
Q ss_pred EEeec
Q 047960 177 VMGNA 181 (371)
Q Consensus 177 VvGn~ 181 (371)
+....
T Consensus 330 l~~~~ 334 (395)
T d1w36b2 330 LGVAP 334 (395)
T ss_dssp EEECC
T ss_pred EEEcc
Confidence 96443
No 4
>d1uaaa2 c.37.1.19 (A:308-640) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}
Probab=96.45 E-value=0.00066 Score=60.93 Aligned_cols=59 Identities=19% Similarity=0.135 Sum_probs=42.8
Q ss_pred CCCeEEccccCCCCccccEEEEEccccCCCC----c--cCC-CCCCchhhhhHhhcccEEEEeecc
Q 047960 124 GKDLYINTVDAFQGQERDVIIMSCVRASNHG----V--GFV-ADIRRMNVALTRARRALWVMGNAG 182 (371)
Q Consensus 124 ~~~i~V~TVd~fQG~ErDVIIiS~vrs~~~~----~--gfl-~d~rRLNVAlSRAK~~liVvGn~~ 182 (371)
...|.+.|++..-|.|.++|++.......-+ . ..+ ...|.+.||+||||+.|+|.....
T Consensus 242 ~~~V~l~TiH~sKGlE~~~V~i~g~~~~~~p~~~~~~~~~leEerRL~YVA~TRA~~~L~is~~~~ 307 (333)
T d1uaaa2 242 LDQVQLMTLHASKGLEFPYVYMVGMEEGFLPHQSSIDEDNIDEERRLAYVGITRAQKELTFTLCKE 307 (333)
T ss_dssp CCSEEEEESTTTSSCCEEEEEECCCBSSTTTTHHHHTTTCCHHHHHHHHHHHHTEEEEEEEEECSS
T ss_pred CCcEEEeehhhhhccCCCeeEecCcccCCCcccccCCcccHHHHHHHhHhhHHHHhheeEEEEecc
Confidence 3479999999999999999998765433210 0 011 133679999999999999976543
No 5
>d1pjra2 c.37.1.19 (A:319-651) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=95.60 E-value=0.0016 Score=58.81 Aligned_cols=59 Identities=20% Similarity=0.212 Sum_probs=41.9
Q ss_pred CCCeEEccccCCCCccccEEEEEccccCCCCc-cCCC-------CCCchhhhhHhhcccEEEEeecc
Q 047960 124 GKDLYINTVDAFQGQERDVIIMSCVRASNHGV-GFVA-------DIRRMNVALTRARRALWVMGNAG 182 (371)
Q Consensus 124 ~~~i~V~TVd~fQG~ErDVIIiS~vrs~~~~~-gfl~-------d~rRLNVAlSRAK~~liVvGn~~ 182 (371)
...|.+.|++...|.|.++|++.......... -.+. ..|.|.||+||||+.|+|.+...
T Consensus 238 ~~~V~i~T~h~sKgle~~~v~~~g~~~~~~p~~~~~~~~~~l~EErRLlYVA~TRAk~~L~is~~~~ 304 (333)
T d1pjra2 238 GDAVMLMTLHAAKGLEFPVVFLIGMEEGIFPHNRSLEDDDEMEEERRLAYVGITRAEEELVLTSAQM 304 (333)
T ss_dssp CCCEEEEEGGGGTTCCEEEEEECCCBTBTTTBGGGGTCHHHHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCeEEeecccccchhcccceeecCCccCCCchhhccCCchhHHHHHHHHHHHHHHHHHeEEEEEecc
Confidence 34689999999999999999986443321110 0011 23468999999999999987643
No 6
>d1w36c2 c.37.1.19 (C:348-817) Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=93.25 E-value=0.57 Score=43.29 Aligned_cols=77 Identities=17% Similarity=0.050 Sum_probs=54.3
Q ss_pred CCeEEccccCCCCccccEEEEEccccCCC-----CccCCC---------------CCCchhhhhHhhcccEEEEeecc--
Q 047960 125 KDLYINTVDAFQGQERDVIIMSCVRASNH-----GVGFVA---------------DIRRMNVALTRARRALWVMGNAG-- 182 (371)
Q Consensus 125 ~~i~V~TVd~fQG~ErDVIIiS~vrs~~~-----~~gfl~---------------d~rRLNVAlSRAK~~liVvGn~~-- 182 (371)
..|.|.|++...|.|+++|+|.-.....- .-+|.. +.+.+-||+||||+.|+|-....
T Consensus 310 d~V~v~tih~akglef~vVfl~Gl~eg~fP~~~~~~~~~~~~~~~~~~~~~~~~eer~lfy~altrA~~~L~lSy~~~~~ 389 (470)
T d1w36c2 310 GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSI 389 (470)
T ss_dssp SSCEEECCCTTCCCCEEEEEEECCBTTTSSCCCCCCSSCHHHHSCCTTCCCHHHHHHHHHHHHHHHEEEEEEEEEECBCS
T ss_pred CCcEEecchhhcCCCCCEEEEEEecCceeecccccchhhhHHHHHhcccchhhHHHHHHHHHHHHhhhceEEEEEecccc
Confidence 57999999999999999999976644310 011111 12457899999999999975332
Q ss_pred ----cccCCchHHHHHHHHHhCC
Q 047960 183 ----ALTQSDDWAALIADSKARN 201 (371)
Q Consensus 183 ----~L~~~~~w~~ll~~a~~~~ 201 (371)
.+..+.....+++++....
T Consensus 390 ~~g~~~~PS~~i~el~~~l~~~~ 412 (470)
T d1w36c2 390 QDNSERFPSVLVQELIDYIGQSH 412 (470)
T ss_dssp SSCCBCCBCHHHHHHHHHHHTTE
T ss_pred cCCCCcCCCHHHHHHHHHHHHhc
Confidence 2344668889988887543
No 7
>d1vsra_ c.52.1.15 (A:) Very short patch repair (VSR) endonuclease {Escherichia coli [TaxId: 562]}
Probab=83.26 E-value=0.072 Score=42.53 Aligned_cols=82 Identities=15% Similarity=0.108 Sum_probs=55.4
Q ss_pred ccCCcccccccCCCCCCCCCCCCCCCc-cccCCCCCCCCCC-----------------cccccccccccccccccccccc
Q 047960 239 RSAGQRHRSFDMNMESRSGTPSEDDEK-VSRNGNYRPFKPP-----------------LENSLDDFDQSGEKYRDAWQHG 300 (371)
Q Consensus 239 ~~~g~r~~~~~~~~~~r~~~~~~~~~~-~~~~g~~~~~~~~-----------------~e~~~~~~~~~~~~~r~~~~~~ 300 (371)
...|||.+-.....|++.|.+-..-.. |.+||.+|--++- ..|..+|......|...||+..
T Consensus 11 ~~~G~RyR~~~k~lpG~PDiv~~~~k~aIfvdGcFWH~h~c~~~~~Pktn~efW~~Ki~~N~~RD~~~~~~L~~~GW~vl 90 (134)
T d1vsra_ 11 TGQGLAFRVQDASLPGRPDFVVDEYRCVIFTHGCFWHHHHCYLFKVPATRTEFWLEKIGKNVERDRRDISRLQELGWRVL 90 (134)
T ss_dssp HHTTCCCEESCTTSTTCCSEEEGGGTEEEEEECTTTTTCSSTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHCCCeEEecCCCCCCCCCEeecCccEEEEEcCccccCCCccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
Confidence 345777777788889999988875444 9999999832221 1345678888999999999999
Q ss_pred cccccCCCCCCCCchHHHHH
Q 047960 301 IQKKQSSGGKGSPRLEDLVD 320 (371)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~ 320 (371)
++=-..--++..-.++.+.+
T Consensus 91 ~iWEcelk~~~~~~~e~i~~ 110 (134)
T d1vsra_ 91 IVWECALRGREKLTDEALTE 110 (134)
T ss_dssp EEEHHHHSSTTCCCHHHHHH
T ss_pred EEecCccCCcccccHHHHHH
Confidence 98544433333333444433
No 8
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}
Probab=75.00 E-value=1.5 Score=37.63 Aligned_cols=46 Identities=15% Similarity=0.245 Sum_probs=37.7
Q ss_pred hcCCCCceEEEEcccHHHHHHHHHHHHhhhccCCCCCeEEccccCC
Q 047960 90 SMGLGKVTVGIITPYKLQLKCLQHEFRNVLNSEEGKDLYINTVDAF 135 (371)
Q Consensus 90 ~~~~~~~sIgVITpy~aQ~~~I~~~L~~~~~~~~~~~i~V~TVd~f 135 (371)
..+.++..|.|+|+.++-++.|+..+.+.........+.+.|++.+
T Consensus 41 ~~~~~~~~ILvlt~tn~a~~~i~~~~~~~~~~~~~~~~~~~t~~~~ 86 (306)
T d1uaaa1 41 GCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARGLMISTFHTL 86 (306)
T ss_dssp HHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTTTSEEEEHHHH
T ss_pred hcCCChhHEEEEeCcHHHHHHHHHHHHHhcCccccccceeeehHHH
Confidence 3467888999999999999999999888776666677888887766
No 9
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=71.40 E-value=1.6 Score=41.57 Aligned_cols=47 Identities=13% Similarity=0.230 Sum_probs=36.7
Q ss_pred HHhcCCCCceEEEEcccHHHHHHHHHHHHhhhccCCCCCeEEccccCC
Q 047960 88 LKSMGLGKVTVGIITPYKLQLKCLQHEFRNVLNSEEGKDLYINTVDAF 135 (371)
Q Consensus 88 l~~~~~~~~sIgVITpy~aQ~~~I~~~L~~~~~~~~~~~i~V~TVd~f 135 (371)
+...+.++.+|.|||+-++-++-|++.|.+.++.. ...+.|.|+|+|
T Consensus 49 l~~~~~~p~~Il~ltft~~Aa~ei~~Ri~~~l~~~-~~~~~v~TfHs~ 95 (623)
T g1qhh.1 49 MAEKHVAPWNILAITFTNKAAREMRERVQSLLGGA-AEDVWISTFHSM 95 (623)
T ss_dssp HHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGG-GTTSEEEEHHHH
T ss_pred HHcCCCCcccEEEEeccHHHHHHHHHHHHHhcccc-cCCCEEEcHHHH
Confidence 34456788999999998888888888888776543 347899999876
No 10
>d1pjra2 c.37.1.19 (A:319-651) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=71.25 E-value=2.8 Score=36.24 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccHHHHHHHHHHHHh
Q 047960 71 VDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRN 117 (371)
Q Consensus 71 ~~EA~~Vv~lv~~l~~~l~~~~~~~~sIgVITpy~aQ~~~I~~~L~~ 117 (371)
..||++|++-+..++ ...+++..+|+|++.-+.|...|.+.|.+
T Consensus 12 ~~Ea~~Ia~~I~~li---~~g~~~~~DIAILvRt~~~~~~i~~~L~~ 55 (333)
T d1pjra2 12 ADEAQFVAGRIREAV---ERGERRYRDFAVLYRTNAQSRVMEEMLLK 55 (333)
T ss_dssp HHHHHHHHHHHHHHH---TTTSCCGGGEEEEESSGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HcCCCCcCCEEEEEECcHhHHHHHHHHHH
Confidence 478888887666553 33347789999999999999999988876
No 11
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=47.72 E-value=8.5 Score=32.94 Aligned_cols=47 Identities=13% Similarity=0.230 Sum_probs=35.2
Q ss_pred HHhcCCCCceEEEEcccHHHHHHHHHHHHhhhccCCCCCeEEccccCC
Q 047960 88 LKSMGLGKVTVGIITPYKLQLKCLQHEFRNVLNSEEGKDLYINTVDAF 135 (371)
Q Consensus 88 l~~~~~~~~sIgVITpy~aQ~~~I~~~L~~~~~~~~~~~i~V~TVd~f 135 (371)
+...+.++.+|.++|+.+.=+..++..+.+..... .....|.|+++|
T Consensus 49 l~~~~~~p~~il~lt~t~~aa~~~~~~~~~~~~~~-~~~~~i~T~hs~ 95 (318)
T d1pjra1 49 MAEKHVAPWNILAITFTNKAAREMRERVQSLLGGA-AEDVWISTFHSM 95 (318)
T ss_dssp HHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGG-GTTSEEEEHHHH
T ss_pred HHcCCCCHHHeEeEeccHHHHHHHHHHHHhhcccc-cccceeecHHHH
Confidence 34445788899999999998988988887665443 345678888765
No 12
>d1em8a_ c.128.1.1 (A:) DNA polymerase III chi subunit {Escherichia coli [TaxId: 562]}
Probab=38.91 E-value=72 Score=24.15 Aligned_cols=36 Identities=11% Similarity=-0.057 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEcccHHHHHHHHHHHHh
Q 047960 75 KFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRN 117 (371)
Q Consensus 75 ~~Vv~lv~~l~~~l~~~~~~~~sIgVITpy~aQ~~~I~~~L~~ 117 (371)
.++++|++...+ .+..|-|+|+-..|++.|.+.|-.
T Consensus 23 ~~~crL~~K~~~-------~g~ri~I~~~d~~~~~~lD~~LWt 58 (147)
T d1em8a_ 23 QLVCEIAAERWR-------SGKRVLIACEDEKQAYRLDEALWA 58 (147)
T ss_dssp HHHHHHHHHHHH-------TTCCEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------CCCEEEEEeCCHHHHHHHHHHHhC
Confidence 345566655533 246899999999999999999965
No 13
>d1uaaa2 c.37.1.19 (A:308-640) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}
Probab=36.91 E-value=11 Score=31.68 Aligned_cols=44 Identities=9% Similarity=-0.176 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccHHHHHHHHHHHHh
Q 047960 71 VDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRN 117 (371)
Q Consensus 71 ~~EA~~Vv~lv~~l~~~l~~~~~~~~sIgVITpy~aQ~~~I~~~L~~ 117 (371)
..||+.|+.-+..+ ....|++..+|+|++--+.|...|.+.|.+
T Consensus 14 ~~E~~~i~~~I~~~---~~~~g~~~~DIAILvR~~~~~~~l~~~L~~ 57 (333)
T d1uaaa2 14 EHEAERVTGELIAH---HFVNKTQYKDYAILYRGNHQSRVFEKFLMQ 57 (333)
T ss_dssp HHHHHHHHHHHHHH---HHHHCCCTTTEEEEESSSGGGTTHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHhcCCChhcEEEEEeCcHhHHHHHHHHHH
Confidence 46888777543222 233488999999999999999988888865
No 14
>d1g47a1 g.39.1.3 (A:1-35) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.49 E-value=5.1 Score=23.60 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=16.6
Q ss_pred cccccceeccCccccccccccc
Q 047960 325 VGLYYTLTLTGSEGIELSHQVC 346 (371)
Q Consensus 325 ~g~~~~~~~~~~~~~~~~~~~~ 346 (371)
.|..|.++-..|+| ||-|+||
T Consensus 15 ~gF~p~EkiVNSnG-El~H~qC 35 (35)
T d1g47a1 15 GGFAPAEKIVNSNG-ELYHEQC 35 (35)
T ss_dssp CBCCSTTTCEEETT-EEECTTT
T ss_pred cCCCchHHhhcCCC-ccccccC
Confidence 47778877777776 7889988
No 15
>d1whza_ d.50.3.2 (A:) Hypothetical protein TTHA1913 {Thermus thermophilus [TaxId: 274]}
Probab=25.32 E-value=7.1 Score=26.68 Aligned_cols=16 Identities=13% Similarity=0.052 Sum_probs=13.7
Q ss_pred cccccccccccccccc
Q 047960 290 GEKYRDAWQHGIQKKQ 305 (371)
Q Consensus 290 ~~~~r~~~~~~~~~~~ 305 (371)
..|++.||.+.|++||
T Consensus 12 k~L~~~Gf~~~rqkGS 27 (70)
T d1whza_ 12 RKLRRLGFVERMAKGG 27 (70)
T ss_dssp HHHHHTTCEEEEEETT
T ss_pred HHHHHCCcEEeccCCc
Confidence 3578999999999986
No 16
>d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow (Bos taurus) [TaxId: 9913]}
Probab=21.78 E-value=16 Score=31.60 Aligned_cols=72 Identities=15% Similarity=0.289 Sum_probs=43.7
Q ss_pred CceEEEEcccHHHHHHHHHHHH---hhhccCCCCCeEEccccCCCCccccEEEEEccccCCCCccCCCCCCchhhhhHhh
Q 047960 95 KVTVGIITPYKLQLKCLQHEFR---NVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRA 171 (371)
Q Consensus 95 ~~sIgVITpy~aQ~~~I~~~L~---~~~~~~~~~~i~V~TVd~fQG~ErDVIIiS~vrs~~~~~gfl~d~rRLNVAlSRA 171 (371)
...++||.||+.+.+.|+..|. ..+.. |+-...|+|+--... .-.+.-..+||++.-|
T Consensus 48 ~~kvaIIIPyRdR~~hL~~fl~~l~~~L~~--------------q~~~y~I~vieQ~~~-----~~FNRg~llNiGf~~a 108 (271)
T d1pzta_ 48 PHKVAIIIPFRNRQEHLKYWLYYLHPILQR--------------QQLDYGIYVINQAGE-----SMFNRAKLLNVGFKEA 108 (271)
T ss_dssp SCEEEEEEEESSCHHHHHHHHHHHHHHHHH--------------TTCEEEEEEEEECSS-----SCCCHHHHHHHHHHHH
T ss_pred cceEEEEEecCChHHHHHHHHHHHHHHHHh--------------cCCCEEEEEEeccCC-----cchhhhhhhhHHHHHh
Confidence 4589999999877766654443 33221 333444444432211 1123346799988887
Q ss_pred cc----cEEEEeeccccc
Q 047960 172 RR----ALWVMGNAGALT 185 (371)
Q Consensus 172 K~----~liVvGn~~~L~ 185 (371)
+. -++||.+.+.+-
T Consensus 109 ~~~~~~~~~ifHDVDllP 126 (271)
T d1pzta_ 109 LKDYDYNCFVFSDVDLIP 126 (271)
T ss_dssp HHHSCCCEEEEECTTEEE
T ss_pred hhccCccEEEEecCCcCc
Confidence 64 578999998864
Done!