BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047961
(280 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GQB|A Chain A, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 637
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 138/239 (57%), Gaps = 16/239 (6%)
Query: 35 LSSGGFDFVVASLMDPNYRPSLMEKDIGGGSHVLSFAGSDLVLSPSQWSSHVVGKISSWI 94
++ GFDF+ + P ++ +++ + SDL+LS W++ +VGK+S WI
Sbjct: 33 VAKQGFDFLCMPVFHPRFKREFIQEPAKNRPGPQT--RSDLLLSGRDWNTLIVGKLSPWI 90
Query: 95 DLDSEDEILRMDSETTLKQEISWASHLSLQACLLPSPKGASCANYARCV-NQILQSLNNM 153
DS+ E +R +SE + QE+++ ++L L A LLP + + N AR + N I ++
Sbjct: 91 RPDSKVEKIRRNSEAAMLQELNFGAYLGLPAFLLPLNQEDN-TNLARVLTNHIHTGHHSS 149
Query: 154 QLWLRIPLVKNDDDTMDFIPSG------------DSWELWNSFRLLCEHHSQLSVALDVL 201
W+R+PLV +D D I + +W W++FR LC++ +++VAL++
Sbjct: 150 MFWMRVPLVAPEDLRDDIIENAPTTHTEEYSGEEKTWMWWHNFRTLCDYSKRIAVALEIG 209
Query: 202 SSLPSANSLGRWLGEPVRAAIIHTDSFLTNARGYPCLSRRHQKLITGFLNHSIQVVISG 260
+ LPS + + RWLGEP++AAI+ T FLTN +G+P LS+ HQ+LI L +Q +I+G
Sbjct: 210 ADLPSNHVIDRWLGEPIKAAILPTSIFLTNKKGFPVLSKMHQRLIFRLLKLEVQFIITG 268
>pdb|4G56|A Chain A, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|C Chain C, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 657
Score = 141 bits (355), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 135/239 (56%), Gaps = 17/239 (7%)
Query: 36 SSGGFDFVVASLMDPNYRPSLMEKDIGGGSHVLSFAGSDLVLSPSQWSSHVVGKISSWID 95
++ GFDF+ + P ++ ++ S SDL+LS W++ +VGK+S WI
Sbjct: 53 ANQGFDFLCXPIFHPRFKREFYKEP--AKSRPGPQTRSDLLLSGRDWNTLIVGKLSDWIK 110
Query: 96 LDSEDEILRMDSETTLKQEISWASHLSLQACLLPSPKGASCANYARC-VNQILQSLNNMQ 154
DSE +R SE +QE++++++L L A L+P K +N +R +N I ++
Sbjct: 111 TDSEVSRIRKTSEAAXQQELNFSAYLGLPAFLIPL-KQEDNSNLSRLLINHIHVGHHSTX 169
Query: 155 LWLRIPLVKNDDDTMDFIP-----------SGD--SWELWNSFRLLCEHHSQLSVALDVL 201
W R+PL +D D I SG+ +W W++FR LC+++ ++++A+++
Sbjct: 170 FWXRVPLXAPNDLRDDLIENEPISLSEEDNSGEERTWIWWHNFRSLCDYNKKIALAIEIG 229
Query: 202 SSLPSANSLGRWLGEPVRAAIIHTDSFLTNARGYPCLSRRHQKLITGFLNHSIQVVISG 260
+ LPS + + RWLGEP++AA + T FLTN +G+P L++ HQ+LI +Q VISG
Sbjct: 230 ADLPSGHVIDRWLGEPIKAAFLPTSIFLTNKKGFPVLTKVHQRLIFKLFKLEVQFVISG 288
>pdb|3UA4|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5
pdb|3UA4|B Chain B, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5
Length = 745
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 82/181 (45%), Gaps = 8/181 (4%)
Query: 74 DLVLSPSQWSSHVVGKISSWIDLDSEDEILRMDSETTLKQEISWASHLSLQACLLPSPKG 133
D+ L W S+VVGKIS WID DS D SE L +E+S+ +L LQ + +
Sbjct: 114 DVQLRNDLWESYVVGKISPWIDCDSSDPAFASLSEEHLLKELSYICYLGLQTMAIELTRI 173
Query: 134 ASCANYARCVNQILQSLNNMQLWLRIP--LVKNDDDTMDFIPSGDSWELWNSFRLLCEHH 191
+S A I + +W+++P + K D I D W +W FR C +
Sbjct: 174 SSPRTAAILKKWIWTRNSRFTVWVQLPSAIEKCKDYDAFTIEHVDLWTIWADFRKNCGNF 233
Query: 192 S--QLSVALDVLSSLPSANS----LGRWLGEPVRAAIIHTDSFLTNARGYPCLSRRHQKL 245
S VAL + S LP + + RW EP+ A +I + F++ G + H L
Sbjct: 234 SGVYFQVALTISSELPDELTELKLVDRWKAEPLAAFVIESGLFISGRNGEASIPSAHINL 293
Query: 246 I 246
+
Sbjct: 294 L 294
>pdb|3UA3|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5 In Complex With Sah
pdb|3UA3|B Chain B, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5 In Complex With Sah
Length = 745
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 82/181 (45%), Gaps = 8/181 (4%)
Query: 74 DLVLSPSQWSSHVVGKISSWIDLDSEDEILRMDSETTLKQEISWASHLSLQACLLPSPKG 133
D+ L W S+VVGKIS WID DS D SE L +E+S+ +L LQ + +
Sbjct: 114 DVQLRNDLWESYVVGKISPWIDCDSSDPAFASLSEEHLLKELSYICYLGLQTXAIELTRI 173
Query: 134 ASCANYARCVNQILQSLNNMQLWLRIP--LVKNDDDTMDFIPSGDSWELWNSFRLLCEHH 191
+S A I + +W+++P + K D I D W +W FR C +
Sbjct: 174 SSPRTAAILKKWIWTRNSRFTVWVQLPSAIEKCKDYDAFTIEHVDLWTIWADFRKNCGNF 233
Query: 192 S--QLSVALDVLSSLPSANS----LGRWLGEPVRAAIIHTDSFLTNARGYPCLSRRHQKL 245
S VAL + S LP + + RW EP+ A +I + F++ G + H L
Sbjct: 234 SGVYFQVALTISSELPDELTELKLVDRWKAEPLAAFVIESGLFISGRNGEASIPSAHINL 293
Query: 246 I 246
+
Sbjct: 294 L 294
>pdb|2II0|A Chain A, Crystal Structure Of Catalytic Domain Of Son Of Sevenless
(Rem-Cdc25) In The Absence Of Ras
Length = 490
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 80/204 (39%), Gaps = 34/204 (16%)
Query: 84 SHVVGKISSWIDLDSEDEILRMDSETTLKQEISWASHLSL--QACLLPSPK-GASCANYA 140
S +VG S W D E ++S LK I ++L+L + C++ + A +
Sbjct: 243 SELVG--SVWTKEDKE-----INSPNLLKM-IRHTTNLTLWFEKCIVETENLEERVAVVS 294
Query: 141 RCVN--QILQSLNNMQLWLRIPLVKND------DDTMDFIPSGDSWELWNSFRLLCEHHS 192
R + Q+ Q LNN L + N D T + IPS L + L +H+
Sbjct: 295 RIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYK 354
Query: 193 QLSVALDVLSSLPSANSLGRWLGEPVRAAIIHTDSFLTNARGYPCLSRRHQKLITGFLNH 252
+ L ++ P G I+ + L G P + +RH K + F
Sbjct: 355 KYLAKLRSINP-PCVPFFG-----------IYLTNILKTEEGNPEVLKRHGKELINFSKR 402
Query: 253 SIQVVISGKLNQWCSQCELGFCFR 276
I+G++ Q+ +Q +C R
Sbjct: 403 RKVAEITGEIQQYQNQ---PYCLR 423
>pdb|1BKD|S Chain S, Complex Of Human H-Ras With Human Sos-1
Length = 477
Score = 34.3 bits (77), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 80/204 (39%), Gaps = 34/204 (16%)
Query: 84 SHVVGKISSWIDLDSEDEILRMDSETTLKQEISWASHLSL--QACLLPSPK-GASCANYA 140
S +VG S W D E ++S LK I ++L+L + C++ + A +
Sbjct: 235 SELVG--SVWTKEDKE-----INSPNLLKM-IRHTTNLTLWFEKCIVETENLEERVAVVS 286
Query: 141 RCVN--QILQSLNNMQLWLRIPLVKND------DDTMDFIPSGDSWELWNSFRLLCEHHS 192
R + Q+ Q LNN L + N D T + IPS L + L +H+
Sbjct: 287 RIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYK 346
Query: 193 QLSVALDVLSSLPSANSLGRWLGEPVRAAIIHTDSFLTNARGYPCLSRRHQKLITGFLNH 252
+ L ++ P G I+ + L G P + +RH K + F
Sbjct: 347 KYLAKLRSINP-PCVPFFG-----------IYLTNILKTEEGNPEVLKRHGKELINFSKR 394
Query: 253 SIQVVISGKLNQWCSQCELGFCFR 276
I+G++ Q+ +Q +C R
Sbjct: 395 RKVAEITGEIQQYQNQ---PYCLR 415
>pdb|1NVU|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVV|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVX|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 481
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 80/204 (39%), Gaps = 34/204 (16%)
Query: 84 SHVVGKISSWIDLDSEDEILRMDSETTLKQEISWASHLSL--QACLLPSPK-GASCANYA 140
S +VG S W D E ++S LK I ++L+L + C++ + A +
Sbjct: 237 SELVG--SVWTKEDKE-----INSPNLLKM-IRHTTNLTLWFEKCIVETENLEERVAVVS 288
Query: 141 RCVN--QILQSLNNMQLWLRIPLVKND------DDTMDFIPSGDSWELWNSFRLLCEHHS 192
R + Q+ Q LNN L + N D T + IPS L + L +H+
Sbjct: 289 RIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYK 348
Query: 193 QLSVALDVLSSLPSANSLGRWLGEPVRAAIIHTDSFLTNARGYPCLSRRHQKLITGFLNH 252
+ L ++ P G I+ + L G P + +RH K + F
Sbjct: 349 KYLAKLRSINP-PCVPFFG-----------IYLTNILKTEEGNPEVLKRHGKELINFSKR 396
Query: 253 SIQVVISGKLNQWCSQCELGFCFR 276
I+G++ Q+ +Q +C R
Sbjct: 397 RKVAEITGEIQQYQNQ---PYCLR 417
>pdb|1XD2|C Chain C, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 484
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 80/204 (39%), Gaps = 34/204 (16%)
Query: 84 SHVVGKISSWIDLDSEDEILRMDSETTLKQEISWASHLSL--QACLLPSPK-GASCANYA 140
S +VG S W D E ++S LK I ++L+L + C++ + A +
Sbjct: 237 SELVG--SVWTKEDKE-----INSPNLLKM-IRHTTNLTLWFEKCIVETENLEERVAVVS 288
Query: 141 RCVN--QILQSLNNMQLWLRIPLVKND------DDTMDFIPSGDSWELWNSFRLLCEHHS 192
R + Q+ Q LNN L + N D T + IPS L + L +H+
Sbjct: 289 RIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYK 348
Query: 193 QLSVALDVLSSLPSANSLGRWLGEPVRAAIIHTDSFLTNARGYPCLSRRHQKLITGFLNH 252
+ L ++ P G I+ + L G P + +RH K + F
Sbjct: 349 KYLAKLRSINP-PCVPFFG-----------IYLTNILKTEEGNPEVLKRHGKELINFSKR 396
Query: 253 SIQVVISGKLNQWCSQCELGFCFR 276
I+G++ Q+ +Q +C R
Sbjct: 397 RKVAEITGEIQQYQNQ---PYCLR 417
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 187 LCEHHSQLSVALDVLSSLPSANSLGRWLGEPVRAAIIHTDSFLTNARGYPCLSRRHQKLI 246
L +L + + SS P +L + +P+ + HT S L A+G+P S R K I
Sbjct: 200 LSATKGRLVITEPISSSAPRTPAL---VQKPLELMVAHTISLLCPAQGFPAPSFRWYKFI 256
Query: 247 TGFLNHSIQVVISGKLNQ 264
G VV++ ++ Q
Sbjct: 257 EGTTRKQ-AVVLNDRVKQ 273
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 187 LCEHHSQLSVALDVLSSLPSANSLGRWLGEPVRAAIIHTDSFLTNARGYPCLSRRHQKLI 246
L +L + + SS P +L + +P+ + HT S L A+G+P S R K I
Sbjct: 194 LSATKGRLVITEPISSSAPRTPAL---VQKPLELMVAHTISLLCPAQGFPAPSFRWYKFI 250
Query: 247 TGFLNHSIQVVISGKLNQ 264
G VV++ ++ Q
Sbjct: 251 EGTTRKQ-AVVLNDRVKQ 267
>pdb|1XD4|A Chain A, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
pdb|1XD4|B Chain B, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
Length = 852
Score = 28.9 bits (63), Expect = 3.1, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 21/138 (15%)
Query: 145 QILQSLNNMQLWLRIPLVKND------DDTMDFIPSGDSWELWNSFRLLCEHHSQLSVAL 198
Q+ Q LNN L + N D T + IPS L + L +H+ + L
Sbjct: 663 QVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKL 722
Query: 199 DVLSSLPSANSLGRWLGEPVRAAIIHTDSFLTNARGYPCLSRRHQKLITGFLNHSIQVVI 258
++ P G I+ + L G P + +RH K + F I
Sbjct: 723 RSINP-PCVPFFG-----------IYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEI 770
Query: 259 SGKLNQWCSQCELGFCFR 276
+G++ Q+ +Q +C R
Sbjct: 771 TGEIQQYQNQ---PYCLR 785
>pdb|1XDV|A Chain A, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang.
pdb|1XDV|B Chain B, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang
Length = 847
Score = 28.9 bits (63), Expect = 3.1, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 21/138 (15%)
Query: 145 QILQSLNNMQLWLRIPLVKND------DDTMDFIPSGDSWELWNSFRLLCEHHSQLSVAL 198
Q+ Q LNN L + N D T + IPS L + L +H+ + L
Sbjct: 663 QVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKL 722
Query: 199 DVLSSLPSANSLGRWLGEPVRAAIIHTDSFLTNARGYPCLSRRHQKLITGFLNHSIQVVI 258
++ P G I+ + L G P + +RH K + F I
Sbjct: 723 RSINP-PCVPFFG-----------IYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEI 770
Query: 259 SGKLNQWCSQCELGFCFR 276
+G++ Q+ +Q +C R
Sbjct: 771 TGEIQQYQNQ---PYCLR 785
>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And
Catalytic Unit Of The Ras Activator Son Of Sevenless
(Sos)
Length = 1049
Score = 28.9 bits (63), Expect = 3.1, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 21/138 (15%)
Query: 145 QILQSLNNMQLWLRIPLVKND------DDTMDFIPSGDSWELWNSFRLLCEHHSQLSVAL 198
Q+ Q LNN L + N D T + IPS L + L +H+ + L
Sbjct: 860 QVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKL 919
Query: 199 DVLSSLPSANSLGRWLGEPVRAAIIHTDSFLTNARGYPCLSRRHQKLITGFLNHSIQVVI 258
++ P G I+ + L G P + +RH K + F I
Sbjct: 920 RSINP-PCVPFFG-----------IYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEI 967
Query: 259 SGKLNQWCSQCELGFCFR 276
+G++ Q+ +Q +C R
Sbjct: 968 TGEIQQYQNQ---PYCLR 982
>pdb|3GZA|A Chain A, Crystal Structure Of Putative Alpha-L-Fucosidase
(Np_812709.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 1.60 A Resolution
pdb|3GZA|B Chain B, Crystal Structure Of Putative Alpha-L-Fucosidase
(Np_812709.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 1.60 A Resolution
Length = 443
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 181 WNSFRLLCEHHSQLSVALDVLSSLPSANSLGRW 213
W++F + C HH ++ ++D L L + GR+
Sbjct: 232 WSTFPVPCSHHKRIESSIDQLELLKHGDKNGRY 264
>pdb|1TET|L Chain L, Crystal Structure Of An Anticholera Toxin Peptide Complex
At 2.3 Angstroms
Length = 216
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 88 GKISSWIDLDSEDEILRMDSETTL-KQEISWASHLSLQA 125
G ++SW D DS+D M S TL K E W + + +A
Sbjct: 163 GVLNSWTDQDSKDSTYSMSSTLTLTKDEYEWHNSYTCEA 201
>pdb|1GPZ|A Chain A, The Crystal Structure Of The Zymogen Catalytic Domain Of
Complement Protease C1r
pdb|1GPZ|B Chain B, The Crystal Structure Of The Zymogen Catalytic Domain Of
Complement Protease C1r
Length = 399
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 175 GDSWELWNSFRLLC-EHHSQLSVALDVLSSLPSANSLGRWLGEPVRAAIIHTD 226
GD W L + L EH +Q + +LDV + L + P+R +H D
Sbjct: 187 GDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPD 239
>pdb|1MD8|A Chain A, Monomeric Structure Of The Active Catalytic Domain Of
Complement Protease C1r
Length = 329
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 175 GDSWELWNSFRLLC-EHHSQLSVALDVLSSLPSANSLGRWLGEPVRAAIIHTD 226
GD W L + L EH +Q + +LDV + L + P+R +H D
Sbjct: 119 GDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPD 171
>pdb|1MD7|A Chain A, Monomeric Structure Of The Zymogen Of Complement Protease
C1r
Length = 328
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 175 GDSWELWNSFRLLC-EHHSQLSVALDVLSSLPSANSLGRWLGEPVRAAIIHTD 226
GD W L + L EH +Q + +LDV + L + P+R +H D
Sbjct: 119 GDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPD 171
>pdb|3IXV|A Chain A, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|C Chain C, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|D Chain D, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|E Chain E, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|F Chain F, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|G Chain G, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|H Chain H, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|I Chain I, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|J Chain J, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|K Chain K, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|L Chain L, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|M Chain M, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXW|A Chain A, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|C Chain C, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|D Chain D, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|E Chain E, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|F Chain F, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|G Chain G, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|H Chain H, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|I Chain I, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|J Chain J, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|K Chain K, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|L Chain L, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|M Chain M, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
Length = 626
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 44 VASLMDPNYRPSLMEKDIGGGSHVLSFAGSDLVLSPSQWSSHVVGK 89
+++DP Y+ S +DIG +H + ++ P+ W+ V+GK
Sbjct: 147 TGNILDPEYKLSYFREDIGINAHHWHWH----IVYPATWNPTVMGK 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,314,120
Number of Sequences: 62578
Number of extensions: 379215
Number of successful extensions: 1270
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1254
Number of HSP's gapped (non-prelim): 37
length of query: 280
length of database: 14,973,337
effective HSP length: 98
effective length of query: 182
effective length of database: 8,840,693
effective search space: 1609006126
effective search space used: 1609006126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)