Query 047961
Match_columns 280
No_of_seqs 120 out of 204
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 04:57:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047961.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047961hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0822 Protein kinase inhibit 100.0 6E-59 1.3E-63 451.6 22.4 260 1-265 7-273 (649)
2 PF05185 PRMT5: PRMT5 arginine 100.0 5.2E-30 1.1E-34 251.1 9.0 89 174-262 2-91 (448)
3 PTZ00372 endonuclease 4-like p 97.9 0.00033 7.1E-09 68.8 14.0 197 12-229 128-352 (413)
4 TIGR00587 nfo apurinic endonuc 97.7 0.0014 3E-08 60.5 14.1 195 16-228 2-220 (274)
5 COG0648 Nfo Endonuclease IV [D 97.2 0.0072 1.6E-07 56.6 12.4 198 15-232 2-222 (280)
6 smart00518 AP2Ec AP endonuclea 96.8 0.015 3.2E-07 52.9 11.4 194 17-228 2-216 (273)
7 PRK01060 endonuclease IV; Prov 96.3 0.055 1.2E-06 49.4 11.4 195 16-226 3-218 (281)
8 cd00019 AP2Ec AP endonuclease 95.5 0.33 7.1E-06 44.4 12.9 228 17-261 1-260 (279)
9 PRK02308 uvsE putative UV dama 89.1 1.4 3E-05 41.7 7.3 155 85-263 106-288 (303)
10 PRK13210 putative L-xylulose 5 86.3 11 0.00024 34.0 11.2 191 15-226 3-212 (284)
11 PRK13209 L-xylulose 5-phosphat 83.4 7.8 0.00017 35.2 8.9 215 17-255 10-247 (283)
12 COG3623 SgaU Putative L-xylulo 80.8 8.2 0.00018 35.8 7.8 132 15-163 5-157 (287)
13 TIGR00542 hxl6Piso_put hexulos 77.2 13 0.00028 33.9 8.1 179 24-225 15-211 (279)
14 KOG3997 Major apurinic/apyrimi 74.8 14 0.00029 34.1 7.3 165 16-201 4-181 (281)
15 PF13465 zf-H2C2_2: Zinc-finge 65.0 2.2 4.8E-05 25.4 0.1 15 259-273 10-24 (26)
16 PRK12677 xylose isomerase; Pro 62.6 93 0.002 30.4 10.9 126 95-225 100-245 (384)
17 PRK09856 fructoselysine 3-epim 48.6 54 0.0012 29.5 6.4 180 25-226 13-211 (275)
18 TIGR02631 xylA_Arthro xylose i 44.5 75 0.0016 31.0 7.0 126 95-225 101-246 (382)
19 TIGR02635 RhaI_grampos L-rhamn 44.4 2.7E+02 0.0058 27.4 10.7 107 95-208 102-220 (378)
20 PF01261 AP_endonuc_2: Xylose 41.4 33 0.00071 28.8 3.5 52 96-149 60-120 (213)
21 smart00647 IBR In Between Ring 36.3 15 0.00034 25.4 0.6 17 260-276 37-53 (64)
22 PF10571 UPF0547: Uncharacteri 32.9 20 0.00044 21.6 0.7 12 262-273 13-24 (26)
23 COG1080 PtsA Phosphoenolpyruva 28.5 1.1E+02 0.0025 31.7 5.5 69 142-227 374-456 (574)
24 PF00096 zf-C2H2: Zinc finger, 28.4 21 0.00045 19.9 0.1 12 265-276 2-13 (23)
25 TIGR03527 selenium_YedF seleni 27.9 88 0.0019 27.7 4.1 43 216-264 120-162 (194)
26 PF07014 Hs1pro-1_C: Hs1pro-1 26.0 20 0.00044 32.8 -0.3 25 247-277 112-136 (261)
27 PF13894 zf-C2H2_4: C2H2-type 24.3 33 0.00071 18.6 0.5 12 265-276 2-13 (24)
28 PF01485 IBR: IBR domain; Int 24.1 34 0.00074 23.6 0.7 13 264-276 41-53 (64)
29 smart00355 ZnF_C2H2 zinc finge 23.7 37 0.00081 18.4 0.7 13 265-277 2-14 (26)
30 COG1072 CoaA Panthothenate kin 22.8 64 0.0014 30.5 2.3 30 207-237 103-143 (283)
31 COG1082 IolE Sugar phosphate i 21.9 5.5E+02 0.012 22.6 9.5 180 24-227 14-208 (274)
32 PF11152 DUF2930: Protein of u 21.5 58 0.0013 29.1 1.7 15 109-123 75-89 (195)
33 PF04244 DPRP: Deoxyribodipyri 21.3 4.7E+02 0.01 23.6 7.6 111 112-258 49-162 (224)
34 PF06460 NSP13: Coronavirus NS 21.2 45 0.00097 31.5 1.0 44 182-227 43-98 (299)
No 1
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=6e-59 Score=451.64 Aligned_cols=260 Identities=37% Similarity=0.622 Sum_probs=226.1
Q ss_pred CCCCCCCCCCCCCceeeecccCCCCChHHHHHhhhccCCCcEEEeccCCCCCCCccccccCCCCCCCCCCCCCCcccCCC
Q 047961 1 MALGERGGWDKSESRYCGVETDFNDDMPHLLSFNLSSGGFDFVVASLMDPNYRPSLMEKDIGGGSHVLSFAGSDLVLSPS 80 (280)
Q Consensus 1 m~~~~~~~~~~~~~~~~G~~~~~~~dl~~~l~~a~~~~gydfv~~PIt~~~~~~~~~~~d~~~~~~~~p~~~sD~~L~~~ 80 (280)
||.....||+..++.++|...++.+++...++......|||||+.|+.+|.+|++..++ ....++.+|++++|+.|.++
T Consensus 7 mp~~~~~~~e~~nSr~~~~~~~~s~e~a~~l~~~v~~~~f~fv~~P~f~~~~r~~~~~~-~~~~~~~~~~~~~dv~l~~~ 85 (649)
T KOG0822|consen 7 MPVYSIGGHERVNSRFLGNVSSCSPEVASNLDYNVATIGFNFVVGPVFGPFQRQNWVPE-QIPENQLQPICIPDVKLSGS 85 (649)
T ss_pred ccccccCCcccccccccccccccCchhhhhccceeeccceeeEeecccCchhhhccccc-CCCcCCCCCccchhheeCcc
Confidence 67777888888889999999999999999999555589999999999999999873321 12335688999999999999
Q ss_pred CCcceEEEEecCCCCCCCccHHHHHhHHHHHHHHHHHHhhcCcceeeecCCCCCChhHHHHHHHHHH-hhcCcceEEEEE
Q 047961 81 QWSSHVVGKISSWIDLDSEDEILRMDSETTLKQEISWASHLSLQACLLPSPKGASCANYARCVNQIL-QSLNNMQLWLRI 159 (280)
Q Consensus 81 ~w~s~vVg~~S~WidlDS~d~~ir~~S~~~L~~El~yA~~lgl~aviip~P~~~~~~~yAr~i~~~l-~~~~~~~iwI~l 159 (280)
+|+++|||++|+||||||+||.+|+.||++|++|++||+|||++.+++++| +....|+||++.... +..+.. ++|
T Consensus 86 dw~s~vVGk~S~Wi~lDS~d~~ir~~seevll~E~~ya~ylgl~~~~l~l~-~~d~~nla~i~~~~~~t~~ns~---~~v 161 (649)
T KOG0822|consen 86 DWNSKVVGKLSSWIELDSEDPKIRDLSEEVLLKELSYARYLGLQKLILALP-RRDNTNLARILQNIIRTLQNSF---MRV 161 (649)
T ss_pred cCcceeEEeecccccCCCCChHHHHhHHHHHHHHHHHHHHcCccceecCCC-CCCchhHHHHHHHHHHhccCce---eEe
Confidence 999999999999999999999999999999999999999999999999996 457889999997655 333322 677
Q ss_pred ecccC----CCCCCCCCC-CCChHHHHHHHHHHhcCCCccEEEEEcc-CCCCChhhhhhhcccCceEEEEeCCccccCCC
Q 047961 160 PLVKN----DDDTMDFIP-SGDSWELWNSFRLLCEHHSQLSVALDVL-SSLPSANSLGRWLGEPVRAAIIHTDSFLTNAR 233 (280)
Q Consensus 160 P~~~~----~~~~~~~~~-~~~~W~~Wn~iR~lc~y~~~L~VaL~l~-~~lP~~~~~~RWl~EPV~~lii~ts~F~tN~k 233 (280)
|...+ ..+....+. ..++|++||+||++|+|+++|+|||+|+ +++|++++++||+||||+|++|++++|++|++
T Consensus 162 ~~a~p~i~~a~~~~~~e~e~~dtW~~Wn~~R~~C~y~~~l~VaLel~~a~~Ps~~lv~RWlaEPi~a~iisss~FvsN~~ 241 (649)
T KOG0822|consen 162 PFAAPAIEIAIDSPLEEYEGNDTWELWNTFRKLCEYHPRLKVALELPRADLPSEELVDRWLAEPIEAIIISSSIFVSNRN 241 (649)
T ss_pred eecchhhhhcccccccccccccHHHHHHHHHHHhCcCCceEEEEecCcccCCcHHHHhhhhccchhheeeecceeeeCCC
Confidence 76643 112111111 4689999999999999999999999999 99999999999999999999999999999999
Q ss_pred CCcccCHHHHHHHHHHHhcCceEEEeccCCCC
Q 047961 234 GYPCLSRRHQKLITGFLNHSIQVVISGKLNQW 265 (280)
Q Consensus 234 GyPVLsK~hQ~~i~~~~r~~~~iil~g~~~~~ 265 (280)
|||||+|+||.+|.+|+++++|+||.|+..|.
T Consensus 242 gypvL~k~~q~li~~f~~~~a~~iI~~n~~~~ 273 (649)
T KOG0822|consen 242 GYPVLSKFHQNLIAHFLKVNAQIIILGNPLDV 273 (649)
T ss_pred CCccccHHHHHHHHHHHhccccEEEeCCCcch
Confidence 99999999999999999999999999999983
No 2
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.96 E-value=5.2e-30 Score=251.15 Aligned_cols=89 Identities=49% Similarity=0.954 Sum_probs=62.5
Q ss_pred CCChHHHHHHHHHHhcCCCccEEEEEccCCCCChhhhhhhcccCceEEEEeCCccccCCCCCcccCHHHHHHHHHHHhcC
Q 047961 174 SGDSWELWNSFRLLCEHHSQLSVALDVLSSLPSANSLGRWLGEPVRAAIIHTDSFLTNARGYPCLSRRHQKLITGFLNHS 253 (280)
Q Consensus 174 ~~~~W~~Wn~iR~lc~y~~~L~VaL~l~~~lP~~~~~~RWl~EPV~~lii~ts~F~tN~kGyPVLsK~hQ~~i~~~~r~~ 253 (280)
..++|++||+||++|+||++|+|+|+|++++|++++++||+||||+|++|++++|+||+||||||+|+||+||++|||++
T Consensus 2 ~~~~W~~W~~~r~~c~~~~~l~v~L~l~~~lp~~~~~~rW~~EPv~~l~i~~s~F~tN~~g~pvL~k~~q~~~~~~~~~~ 81 (448)
T PF05185_consen 2 PLDTWEWWNTIRSLCNYHPRLGVALELPRDLPSEEVLNRWLGEPVKCLIIPTSIFLTNKKGYPVLSKAHQSLLRRFFRLN 81 (448)
T ss_dssp S--HHHHHHHHHHHT---TTEEEEEEE-SS--GGHHHCGGGGTTEEEEEEES-----STTT-----HHHHHHHHHH--ST
T ss_pred CCCHHHHHHHHHHHhCCCCceEEEEEcCCCCCCHHHHHHHhcCCccEEEEcHHHhhcCcCCCccCCHHHHHHHHHHHHhc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999866
Q ss_pred -ceEEEeccC
Q 047961 254 -IQVVISGKL 262 (280)
Q Consensus 254 -~~iil~g~~ 262 (280)
+++++.|+.
T Consensus 82 ~~~~~~~~~~ 91 (448)
T PF05185_consen 82 GVQIILSGEL 91 (448)
T ss_dssp T-EEEEE--S
T ss_pred CCceeecccc
Confidence 677777643
No 3
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=97.86 E-value=0.00033 Score=68.80 Aligned_cols=197 Identities=13% Similarity=0.147 Sum_probs=133.0
Q ss_pred CCceeeecccCCCCChHHHHHhhhccCCCcEEEeccCCCCC-CCccccccCCCCCCCCCCCCCCcccCCC-----C-Ccc
Q 047961 12 SESRYCGVETDFNDDMPHLLSFNLSSGGFDFVVASLMDPNY-RPSLMEKDIGGGSHVLSFAGSDLVLSPS-----Q-WSS 84 (280)
Q Consensus 12 ~~~~~~G~~~~~~~dl~~~l~~a~~~~gydfv~~PIt~~~~-~~~~~~~d~~~~~~~~p~~~sD~~L~~~-----~-w~s 84 (280)
.....+|-|..-..-+..++..|. +.|.+-+-+-+.+||- +.. |++..|...... . -..
T Consensus 128 ~~~~~iGaHvSiaGG~~~a~~~a~-~~g~~afqiF~~npr~w~~~-------------~~~~~~~~~f~~~~~~~gi~~~ 193 (413)
T PTZ00372 128 KSNVYIGAHVSASGGVDNSPINAY-NIAGQAFALFLKNQRTWNSP-------------PLSDETIDKFKENCKKYNYDPK 193 (413)
T ss_pred ccCceEEEEEeccccHHHHHHHHH-HcCCCEEEEEcCCCccCCCC-------------CCCHHHHHHHHHHHHHcCCCcc
Confidence 346799999987788889999999 9999999999988843 222 222222110000 0 012
Q ss_pred eEEEEecCCCCCCCccHHHHHhHHHHHHHHHHHHhhcCcceeeecCCC-------CCChhHHHHHHHHHHhhcCcceEEE
Q 047961 85 HVVGKISSWIDLDSEDEILRMDSETTLKQEISWASHLSLQACLLPSPK-------GASCANYARCVNQILQSLNNMQLWL 157 (280)
Q Consensus 85 ~vVg~~S~WidlDS~d~~ir~~S~~~L~~El~yA~~lgl~aviip~P~-------~~~~~~yAr~i~~~l~~~~~~~iwI 157 (280)
.++...+-.|+|.|+|+.+|+.|.+.|.+||..|+.||++.|++-+-. .....++++.|++++..... +.|
T Consensus 194 ~i~~HapYlINLASpd~e~rekSv~~~~~eL~rA~~LGa~~VV~HPGs~~~~~~~ee~i~~i~e~L~~~la~~~g--V~I 271 (413)
T PTZ00372 194 FILPHGSYLINLANPDKEKREKSYDAFLDDLQRCEQLGIKLYNFHPGSTVGQCSKEEGIKNIADCINKAHEETKS--VII 271 (413)
T ss_pred eEEeecCceecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcCCCCCCHHHHHHHHHHHHHHHHhCcCC--CEE
Confidence 355555556999999999999999999999999999999999995422 12356788888887754333 334
Q ss_pred EEecccCCCCCCCCCCCCChHHHHHHHHHHhcCCCccEEEEEcc------CCCCChhhhhhhc-------c-cCceEEEE
Q 047961 158 RIPLVKNDDDTMDFIPSGDSWELWNSFRLLCEHHSQLSVALDVL------SSLPSANSLGRWL-------G-EPVRAAII 223 (280)
Q Consensus 158 ~lP~~~~~~~~~~~~~~~~~W~~Wn~iR~lc~y~~~L~VaL~l~------~~lP~~~~~~RWl-------~-EPV~~lii 223 (280)
-|.-..... .....+.+.-..+...++..++++|+|+.. .++-+.+.++.|+ | +-|+++-+
T Consensus 272 lLENmag~g-----~~lG~~~eeL~~Iid~v~~~~rlGvCLDTcHafaAGydl~t~e~~~~~l~~f~~~iGl~rL~~vHL 346 (413)
T PTZ00372 272 VLENTAGQK-----NSVGSKFEDLRDIIALVEDKSRVGVCLDTCHLFAAGYDIRTKESFDKVMKEFDEIVGLKYLKAVHL 346 (413)
T ss_pred EEecCCCCC-----CcccCCHHHHHHHHHhcCCcCCeEEEEEHHHHHhcCCCCCcHHHHHHHHHHHHHhcChhheeEEEE
Confidence 443111100 012246666666666777778999999988 3555544455454 4 78999999
Q ss_pred eCCccc
Q 047961 224 HTDSFL 229 (280)
Q Consensus 224 ~ts~F~ 229 (280)
+-+-.-
T Consensus 347 NDSk~~ 352 (413)
T PTZ00372 347 NDSKSD 352 (413)
T ss_pred EcCCCc
Confidence 988754
No 4
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.65 E-value=0.0014 Score=60.47 Aligned_cols=195 Identities=15% Similarity=0.154 Sum_probs=119.6
Q ss_pred eeecccCCCCChHHHHHhhhccCCCcEEEeccCCCCCCCccc-c-ccCCCCCCCCCCCCCCcccCCCCCcceEEEEecCC
Q 047961 16 YCGVETDFNDDMPHLLSFNLSSGGFDFVVASLMDPNYRPSLM-E-KDIGGGSHVLSFAGSDLVLSPSQWSSHVVGKISSW 93 (280)
Q Consensus 16 ~~G~~~~~~~dl~~~l~~a~~~~gydfv~~PIt~~~~~~~~~-~-~d~~~~~~~~p~~~sD~~L~~~~w~s~vVg~~S~W 93 (280)
.+|.|.+-...+.+++..+. +.|||++=+-+.+|++-.... . ++ ...|.+ .+....-.-..+..-+++
T Consensus 2 ~~g~h~s~~g~~~~a~~~~~-~~G~~~~qif~~~P~~w~~~~~~~~~------~~~~~~---~~~~~~~~~~~i~~Hapy 71 (274)
T TIGR00587 2 LLGAHVSAAGGLQAAYNRAA-EIGATAFMFFLKSPRWWRRPMLEEEV------IDWFKA---ALETNKNLSQIVLVHAPY 71 (274)
T ss_pred ceEEEEeccCCHHHHHHHHH-HhCCCEEEEEecCccccCCCCCCHHH------HHHHHH---HHHHcCCCCcceeccCCe
Confidence 57899877788999999999 999999999999997543211 0 00 000000 000000001114444555
Q ss_pred -CCCCCccHHHHHhHHHHHHHHHHHHhhcCcceeeecCCCC------CChhHHHHHHHHHHhhcCcceEEEEEecccCCC
Q 047961 94 -IDLDSEDEILRMDSETTLKQEISWASHLSLQACLLPSPKG------ASCANYARCVNQILQSLNNMQLWLRIPLVKNDD 166 (280)
Q Consensus 94 -idlDS~d~~ir~~S~~~L~~El~yA~~lgl~aviip~P~~------~~~~~yAr~i~~~l~~~~~~~iwI~lP~~~~~~ 166 (280)
+++.|+|+.+|+.|.+.+++++..|+.+|...|++.+-.. ....+.++.+++++..... +.|-|.-.....
T Consensus 72 ~iNlas~~~~~r~~sv~~~~~~i~~A~~lga~~vv~H~G~~~~~~~e~~~~~~~~~l~~l~~~~~~--v~l~lEN~~~~~ 149 (274)
T TIGR00587 72 LINLASPDEEKEEKSLDVLDEELKRCELLGIMLYNFHPGSALKCSEEEGLDNLIESLNVVIKETKI--VTILLENMAGQG 149 (274)
T ss_pred eeecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHhccCC--CEEEEEeCCCCC
Confidence 8999999999999999999999999999999988865221 1234556666776653333 334442111100
Q ss_pred CCCCCCCCCChHH-HHHHHHHHhcCCCccEEEEEccC------CCCChhhhhhhcc--------cCceEEEEeCCcc
Q 047961 167 DTMDFIPSGDSWE-LWNSFRLLCEHHSQLSVALDVLS------SLPSANSLGRWLG--------EPVRAAIIHTDSF 228 (280)
Q Consensus 167 ~~~~~~~~~~~W~-~Wn~iR~lc~y~~~L~VaL~l~~------~lP~~~~~~RWl~--------EPV~~lii~ts~F 228 (280)
. ....+-+ .-..++ .++..++++++|+... ++-..+.++.|+. +-|+.+-++-+.+
T Consensus 150 ~-----~l~~~~~el~~ll~-~~~~~~~lg~~lDt~H~~~~g~~~~~~~~~~~~~~~~~~~~g~~~i~~vHl~Ds~~ 220 (274)
T TIGR00587 150 S-----ELGRSFEELAYIIK-VIVDKRRIGVCLDTCHFFAAGYDITTKAYFEVVKNEFDVVVGFKYLKAIHLNDSKN 220 (274)
T ss_pred C-----ccCCCHHHHHHHHH-hcCCCCceEEEEEhhhHHhcCCCcCCHHHHHHHHHHHHHhcCHhheeEEEEEcCcc
Confidence 0 0111222 222222 3455689999999984 3323445777753 5699999988764
No 5
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=97.15 E-value=0.0072 Score=56.63 Aligned_cols=198 Identities=13% Similarity=0.176 Sum_probs=138.1
Q ss_pred eeeecccCCCC--ChHHHHHhhhccCCCcEEEeccCCC-CCCCccccccCCCCCCCCCCCCCCcccCCCCCcceEEEEec
Q 047961 15 RYCGVETDFND--DMPHLLSFNLSSGGFDFVVASLMDP-NYRPSLMEKDIGGGSHVLSFAGSDLVLSPSQWSSHVVGKIS 91 (280)
Q Consensus 15 ~~~G~~~~~~~--dl~~~l~~a~~~~gydfv~~PIt~~-~~~~~~~~~d~~~~~~~~p~~~sD~~L~~~~w~s~vVg~~S 91 (280)
..+|-|..... .+...++.+. +.|.|.+-+...+| .|.+....++ ....| ...+. + ...++...+
T Consensus 2 ~~~G~h~s~~~~~~~~~~~~~a~-~iG~na~~if~~~~~~~~~~~~~~~-----~~~~~---~~~~~--~-~~~i~vHAp 69 (280)
T COG0648 2 ILFGAHGSPAGGKSLVNAVERAR-EIGLNAFEIFLVNPRVWISPPLAED-----AIELF---KAALK--D-DVQLSVHAP 69 (280)
T ss_pred ceEeeeecCCCchhHHHHHHHHH-HcCCCEEEEEecCcccccCCCchHH-----HHHHH---HHhhc--c-CceEEeecc
Confidence 35777775443 4889999999 99999999999999 5555432111 00000 00111 1 355677777
Q ss_pred CCCCCCCccHHHHHhHHHHHHHHHHHHhhcCcceeeecCCC------CCChhHHHHHHHHHHhhcCcceEEEEEecccCC
Q 047961 92 SWIDLDSEDEILRMDSETTLKQEISWASHLSLQACLLPSPK------GASCANYARCVNQILQSLNNMQLWLRIPLVKND 165 (280)
Q Consensus 92 ~WidlDS~d~~ir~~S~~~L~~El~yA~~lgl~aviip~P~------~~~~~~yAr~i~~~l~~~~~~~iwI~lP~~~~~ 165 (280)
-.|+|.|+++.++..|.+.|.+|+.=+..+|+..|++-+=- .....+.+..||+++.. .. +.+-++-....
T Consensus 70 YlINl~s~~~e~~ekS~~~l~~e~~r~~~lG~~~lv~HpG~~~~~~~e~~l~~i~~~Ln~~~~~-~~--v~i~~e~~age 146 (280)
T COG0648 70 YLINLASPEKEKVEKSIERLIDEIDRCEQLGAKLLVFHPGSYLGQGKEEGLNRIAEALNELLEE-EG--VIILLENTAGE 146 (280)
T ss_pred eeecCCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEECCccccCCCHHHHHHHHHHHHHHHhhc-cC--CeEEEEEeccc
Confidence 79999999999999999999999999999999999996411 13567788899999875 33 66666655442
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhcCCCccEEEEEcc------CCCCCh----h---hhhhhccc-CceEEEEeCCccccC
Q 047961 166 DDTMDFIPSGDSWELWNSFRLLCEHHSQLSVALDVL------SSLPSA----N---SLGRWLGE-PVRAAIIHTDSFLTN 231 (280)
Q Consensus 166 ~~~~~~~~~~~~W~~Wn~iR~lc~y~~~L~VaL~l~------~~lP~~----~---~~~RWl~E-PV~~lii~ts~F~tN 231 (280)
... ....-+.=..+-.+++-..|++|+|+-. .++-.. + .+++=+|- =++++-++.+-+-..
T Consensus 147 gs~-----~g~~F~~L~eii~~~~~~~~igvCiDtcH~~Aagy~~~~~~~~~~vl~~~d~~~G~~~~~~~Hlndsk~~~G 221 (280)
T COG0648 147 GSG-----KGTQFGELAEIIDLIEEKERIGVCIDTCHAFAAGYDIITEEDFEKVLNEFDKVLGLEYLKHIHLNDSKYPLG 221 (280)
T ss_pred cCc-----cccchhhHHHHHHhhcccCceEEEEEchhhhhccCCcCcHHHHHHHHHHHHHHhChhhheeEeecCcccccc
Confidence 111 2245555567778888999999999876 355553 2 34445664 899999999988543
Q ss_pred C
Q 047961 232 A 232 (280)
Q Consensus 232 ~ 232 (280)
+
T Consensus 222 ~ 222 (280)
T COG0648 222 S 222 (280)
T ss_pred c
Confidence 3
No 6
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=96.83 E-value=0.015 Score=52.89 Aligned_cols=194 Identities=14% Similarity=0.163 Sum_probs=114.5
Q ss_pred eecccCCCCChHHHHHhhhccCCCcEEEeccCCCCCCCccccccCCCCCCCC-CCCCCCcccCCCCCcceEEEEecCCCC
Q 047961 17 CGVETDFNDDMPHLLSFNLSSGGFDFVVASLMDPNYRPSLMEKDIGGGSHVL-SFAGSDLVLSPSQWSSHVVGKISSWID 95 (280)
Q Consensus 17 ~G~~~~~~~dl~~~l~~a~~~~gydfv~~PIt~~~~~~~~~~~d~~~~~~~~-p~~~sD~~L~~~~w~s~vVg~~S~Wid 95 (280)
+|.|.+....+...++.+. +.|||.|=+-+..|++-......+... ...- -+...++. +.....-+++
T Consensus 2 ~g~~~~~~~~~~~~~~~~~-~~G~~~vel~~~~~~~~~~~~~~~~~~-~~l~~~~~~~gl~---------ls~h~p~~~n 70 (273)
T smart00518 2 IGAHVSAAGGLYKAFIEAV-DIGARSFQLFLGNPRSWKGVRLSEETA-EKFKEALKENNID---------VSVHAPYLIN 70 (273)
T ss_pred eeEEEcccCcHhHHHHHHH-HcCCCEEEEECCCCCCCCCCCCCHHHH-HHHHHHHHHcCCC---------EEEECCceec
Confidence 6888876677888999999 999999999888886642210000000 0000 00000111 2222222368
Q ss_pred CCCccHHHHHhHHHHHHHHHHHHhhcCcceeeecCCCC------CChhHHHHHHHHHHhhcCcceEEEEEecccCCCCCC
Q 047961 96 LDSEDEILRMDSETTLKQEISWASHLSLQACLLPSPKG------ASCANYARCVNQILQSLNNMQLWLRIPLVKNDDDTM 169 (280)
Q Consensus 96 lDS~d~~ir~~S~~~L~~El~yA~~lgl~aviip~P~~------~~~~~yAr~i~~~l~~~~~~~iwI~lP~~~~~~~~~ 169 (280)
+.|+|+.+|+.+.+.+++-+..|..+|.+.|++-+... ....++++.++++......+.+.+.- ......
T Consensus 71 l~s~d~~~r~~~~~~l~~~i~~A~~lGa~~vv~h~g~~~~~~~e~~~~~~~~~l~~l~~~~~gv~l~lEn--~~~~~~-- 146 (273)
T smart00518 71 LASPDKEKVEKSIERLIDEIKRCEELGIKALVFHPGSYLKQSKEEALNRIIESLNEVIDETKGVVILLET--TAGKGS-- 146 (273)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHHHHhccCCcEEEEec--cCCCCC--
Confidence 89999999999999999999999999999988854221 12344555666665432223333321 110000
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCccEEEEEccCCCCC------h----hhhhhh---cc-cCceEEEEeCCcc
Q 047961 170 DFIPSGDSWELWNSFRLLCEHHSQLSVALDVLSSLPS------A----NSLGRW---LG-EPVRAAIIHTDSF 228 (280)
Q Consensus 170 ~~~~~~~~W~~Wn~iR~lc~y~~~L~VaL~l~~~lP~------~----~~~~RW---l~-EPV~~lii~ts~F 228 (280)
....+.+.+..+-..++..++++++|++..-.-. . +.++++ +| +=|+.+-+.-+..
T Consensus 147 ---~~~~~~~~~~~ll~~v~~~~~~g~~lD~gH~~~~g~d~~~~~~~~~~i~~~~~~~g~~~I~~vHl~D~~~ 216 (273)
T smart00518 147 ---QIGSTFEDLKEIIDLIKELDRIGVCIDTCHIFAAGYDINTVEGFEKVLEEFENVLGLEYLKAIHLNDSKI 216 (273)
T ss_pred ---ccCCCHHHHHHHHHhcCCCCCeEEEEEccchhhccCCCCCHHHHHHHHHHHHHHhCHHhhceEEeecCCC
Confidence 0123556666666677665789999999953211 1 223333 34 5688888876643
No 7
>PRK01060 endonuclease IV; Provisional
Probab=96.29 E-value=0.055 Score=49.37 Aligned_cols=195 Identities=12% Similarity=0.129 Sum_probs=110.0
Q ss_pred eeecccCCCCChHHHHHhhhccCCCcEEEeccCCCCCCCccccccCCCCCCCC-CCCCCCcccCCCCCcceEEEEecCC-
Q 047961 16 YCGVETDFNDDMPHLLSFNLSSGGFDFVVASLMDPNYRPSLMEKDIGGGSHVL-SFAGSDLVLSPSQWSSHVVGKISSW- 93 (280)
Q Consensus 16 ~~G~~~~~~~dl~~~l~~a~~~~gydfv~~PIt~~~~~~~~~~~d~~~~~~~~-p~~~sD~~L~~~~w~s~vVg~~S~W- 93 (280)
.+|.+.+...++.+.++.+. +.|||.|=+-+.+|++-......+... ...- -+....+. ...++. .++|
T Consensus 3 ~~g~~~~~~~~~~~~l~~~~-~~G~d~vEl~~~~p~~~~~~~~~~~~~-~~lk~~~~~~gl~------~~~~~~-h~~~~ 73 (281)
T PRK01060 3 LIGAHVSAAGGLEGAVAEAA-EIGANAFMIFTGNPQQWKRKPLEELNI-EAFKAACEKYGIS------PEDILV-HAPYL 73 (281)
T ss_pred eEEEeeecCCCHHHHHHHHH-HcCCCEEEEECCCCCCCcCCCCCHHHH-HHHHHHHHHcCCC------CCceEE-ecceE
Confidence 68999987788999999999 999999988877775432100000000 0000 00000111 111222 3444
Q ss_pred CCCCCccHHHHHhHHHHHHHHHHHHhhcCcceeeecCCCC-------CChhHHHHHHHHHHhhcCcceEEEEEecccCCC
Q 047961 94 IDLDSEDEILRMDSETTLKQEISWASHLSLQACLLPSPKG-------ASCANYARCVNQILQSLNNMQLWLRIPLVKNDD 166 (280)
Q Consensus 94 idlDS~d~~ir~~S~~~L~~El~yA~~lgl~aviip~P~~-------~~~~~yAr~i~~~l~~~~~~~iwI~lP~~~~~~ 166 (280)
+++.|+|+.+|+.+.+.+++.++.|..+|.+.|++-+... ....++++.+++++..... +.|.|.-.....
T Consensus 74 ~nl~~~d~~~r~~s~~~~~~~i~~A~~lga~~vv~h~G~~~~~~~~~~~~~~~~e~l~~l~~~~~g--v~l~iEn~~~~~ 151 (281)
T PRK01060 74 INLGNPNKEILEKSRDFLIQEIERCAALGAKLLVFHPGSHLGDIDEEDCLARIAESLNEALDKTQG--VTIVLENTAGQG 151 (281)
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcHHHHHHHHHHHHHHHHhcCCC--CEEEEecCCCCC
Confidence 6899999999999999999999999999999988854221 1234556666666543333 333332111100
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCccEEEEEccCCC----CCh----hhhhhhc---c-cCceEEEEeCC
Q 047961 167 DTMDFIPSGDSWELWNSFRLLCEHHSQLSVALDVLSSL----PSA----NSLGRWL---G-EPVRAAIIHTD 226 (280)
Q Consensus 167 ~~~~~~~~~~~W~~Wn~iR~lc~y~~~L~VaL~l~~~l----P~~----~~~~RWl---~-EPV~~lii~ts 226 (280)
. ....+=+....+-..++...+++++|+...-. ... +.++++. + +-|+++-+.-+
T Consensus 152 ~-----~~~~~~~~~~~l~~~v~~~~~vg~~lD~gH~~~~g~d~~~~~~~~~~~~~~~~~~~~i~~vHl~D~ 218 (281)
T PRK01060 152 S-----ELGRRFEELARIIDGVEDKSRVGVCLDTCHAFAAGYDLREDFEGVLAEFDRIVGLDRLKVMHLNDS 218 (281)
T ss_pred C-----cccCCHHHHHHHHHhcCCcccEEEEEeHHhHhhcCCChHHHHHHHHHHHHHhhChhheeEEEEecC
Confidence 0 00012223333333444433499999988421 111 3344443 2 67888888543
No 8
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=95.50 E-value=0.33 Score=44.37 Aligned_cols=228 Identities=15% Similarity=0.144 Sum_probs=121.3
Q ss_pred eecccC-CCCChHHHHHhhhccCCCcEEEeccCCCCCCCccccccCCCCCCCCCCCCCCcccCCCCCcceEEEEecC-CC
Q 047961 17 CGVETD-FNDDMPHLLSFNLSSGGFDFVVASLMDPNYRPSLMEKDIGGGSHVLSFAGSDLVLSPSQWSSHVVGKISS-WI 94 (280)
Q Consensus 17 ~G~~~~-~~~dl~~~l~~a~~~~gydfv~~PIt~~~~~~~~~~~d~~~~~~~~p~~~sD~~L~~~~w~s~vVg~~S~-Wi 94 (280)
+|++.. ..-++.+.++.+. +.|||+|=+.+.++.........+ .....+. + .+. +-....+....+ ++
T Consensus 1 ~~~~~~~~~~~l~~~l~~a~-~~G~d~vEl~~~~~~~~~~~~~~~----~~~~~l~--~-~~~--~~~~~~i~~~~~~~~ 70 (279)
T cd00019 1 IGAHVSAAGFGLENALKRAK-EIGFDTVAMFLGNPRSWLSRPLKK----ERAEKFK--A-IAE--EGPSICLSVHAPYLI 70 (279)
T ss_pred CccccccccccHHHHHHHHH-HcCCCEEEEEcCCCCccCCCCCCH----HHHHHHH--H-HHH--HcCCCcEEEEcCcee
Confidence 355553 2267889999999 999999988887653222110000 0000000 0 000 001112223333 35
Q ss_pred CCCCccHHHHHhHHHHHHHHHHHHhhcCcceeeecCCCCC------ChhHHHHHHHHHHhhcCcceEEEEEecccCCCCC
Q 047961 95 DLDSEDEILRMDSETTLKQEISWASHLSLQACLLPSPKGA------SCANYARCVNQILQSLNNMQLWLRIPLVKNDDDT 168 (280)
Q Consensus 95 dlDS~d~~ir~~S~~~L~~El~yA~~lgl~aviip~P~~~------~~~~yAr~i~~~l~~~~~~~iwI~lP~~~~~~~~ 168 (280)
.+-++++..|..+.+.+++=+..|..+|.+.+++.+.... ....+++.++++........+.+.|.-.......
T Consensus 71 ~~~~~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~~~ 150 (279)
T cd00019 71 NLASPDKEKREKSIERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQGNE 150 (279)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCC
Confidence 6778899999999999999999999999999988553321 1234455666666543333444444322111000
Q ss_pred CCCCCCCChHHHHHHHHHHhcCCCccEEEEEccCCC----C------Chhhhhhhccc--C--ceEEEEeCCcccc--CC
Q 047961 169 MDFIPSGDSWELWNSFRLLCEHHSQLSVALDVLSSL----P------SANSLGRWLGE--P--VRAAIIHTDSFLT--NA 232 (280)
Q Consensus 169 ~~~~~~~~~W~~Wn~iR~lc~y~~~L~VaL~l~~~l----P------~~~~~~RWl~E--P--V~~lii~ts~F~t--N~ 232 (280)
...+..+.+..+.. ++-++++++.|++..-. . -.+.++++..- + |..+-+.-..+.. +.
T Consensus 151 ----~~~t~~~~~~li~~-v~~~~~~g~~lD~~h~~~~g~~~~~~~~~~~~l~~~~~~i~~~~i~~vHikD~~~~~~~~~ 225 (279)
T cd00019 151 ----IGSSFEELKEIIDL-IKEKPRVGVCIDTCHIFAAGYDISTVEGFEKVLEEFDKVIGLEYLKAIHLNDSKGELGSGK 225 (279)
T ss_pred ----CCCCHHHHHHHHHh-cCCCCCeEEEEEhhhHHhccCCCCCHHHHHHHHHHHHHHhChhheeEEEEEcCCCcccCCC
Confidence 01233444445544 44467899999998622 1 11223332211 1 5788887655431 11
Q ss_pred C-----CCcccCHHHHHHHHHHHhc---CceEEEecc
Q 047961 233 R-----GYPCLSRRHQKLITGFLNH---SIQVVISGK 261 (280)
Q Consensus 233 k-----GyPVLsK~hQ~~i~~~~r~---~~~iil~g~ 261 (280)
. |.-.+. -..+++.+-+. +-.++|.-.
T Consensus 226 ~~~~~~G~G~id--~~~~l~~L~~~~y~~g~~~lE~~ 260 (279)
T cd00019 226 DRHEPIGEGDID--GEELFKELKKDPYQNIPLILETP 260 (279)
T ss_pred ccccCCCCCCcC--CHHHHHHHHhCcccCCCEEEeCC
Confidence 1 222221 35566666554 456666553
No 9
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=89.12 E-value=1.4 Score=41.69 Aligned_cols=155 Identities=14% Similarity=0.204 Sum_probs=96.3
Q ss_pred eEEEEecCCCCCCCccHHHHHhHHHHHHHHHHHHhhcCcc---eeeec-CCC-C---CChhHHHHHHHHHHhhcCcceEE
Q 047961 85 HVVGKISSWIDLDSEDEILRMDSETTLKQEISWASHLSLQ---ACLLP-SPK-G---ASCANYARCVNQILQSLNNMQLW 156 (280)
Q Consensus 85 ~vVg~~S~WidlDS~d~~ir~~S~~~L~~El~yA~~lgl~---aviip-~P~-~---~~~~~yAr~i~~~l~~~~~~~iw 156 (280)
.++...+..+.|.|++|.+++.|.+.|.+++..|..||+. .|+|- +-. + ....++++.++++.... .+.
T Consensus 106 rls~Hp~y~inL~S~~~ev~e~Si~~L~~~~~~~~~lG~~~~~~vViHpG~~~~~ke~al~r~~~~l~~l~~~~---~~~ 182 (303)
T PRK02308 106 RLSFHPDQFVVLNSPKPEVVENSIKDLEYHAKLLDLMGIDDSSKINIHVGGAYGDKEKALERFIENIKKLPESI---KKR 182 (303)
T ss_pred CeeccChhhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCccCCCHHHHHHHHHHHHHHhhHHh---CCE
Confidence 5666677799999999999999999999999999999999 88884 421 1 13444555555554332 233
Q ss_pred EEEecccCCCCCCCCCCCCChHHHHHHHHHHhcCCCccEEEEEcc------CCCCC----hhhhhhhccc-CceEEEEeC
Q 047961 157 LRIPLVKNDDDTMDFIPSGDSWELWNSFRLLCEHHSQLSVALDVL------SSLPS----ANSLGRWLGE-PVRAAIIHT 225 (280)
Q Consensus 157 I~lP~~~~~~~~~~~~~~~~~W~~Wn~iR~lc~y~~~L~VaL~l~------~~lP~----~~~~~RWl~E-PV~~lii~t 225 (280)
+.|.-.+ ..|..-.. ..+|+-- .+.|+|+.- .+++. +..++.|-.+ =+.++-++.
T Consensus 183 L~LEN~~------------~~~t~~el-l~I~e~~-~ipv~~D~hH~~~~g~~l~~~e~~~~~~~tw~~~~~~~~iHlsd 248 (303)
T PRK02308 183 LTLENDD------------KTYTVEEL-LYICEKL-GIPVVFDYHHHMCNPDGESLEEALELAFETWEHEDLPPKVHISS 248 (303)
T ss_pred EEEeeCC------------CCCCHHHH-HHHHHHc-CCCEEEeHHhhhhcCCCCChHHHHHHHHHHhhccCCCeeEEeCC
Confidence 3332111 23444343 3477643 255888754 35554 3467888766 367777777
Q ss_pred CccccCCCCCcccCHHHHHHHH-----HHHh----cCceEEEeccCC
Q 047961 226 DSFLTNARGYPCLSRRHQKLIT-----GFLN----HSIQVVISGKLN 263 (280)
Q Consensus 226 s~F~tN~kGyPVLsK~hQ~~i~-----~~~r----~~~~iil~g~~~ 263 (280)
+-+-+++ ++|..+|. .|++ .+.-++|.....
T Consensus 249 ~k~~~~~-------~rHa~~I~~~~f~~~l~~~~~~~~dimiEaK~K 288 (303)
T PRK02308 249 PREGKKP-------RAHADYIDVDDFPSFLHEAIVPDIDIMIEAKQK 288 (303)
T ss_pred CCCCCCC-------CcchhhcCHHHHHHHHHhccCCCceEEEEecch
Confidence 7654332 45665443 3443 256677766543
No 10
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=86.31 E-value=11 Score=34.04 Aligned_cols=191 Identities=15% Similarity=0.136 Sum_probs=99.0
Q ss_pred eeeecccCCC---CChHHHHHhhhccCCCcEEEeccCCCCCCCccccccCCCCC--CC-CCCCCCCcccCCCCCcceEEE
Q 047961 15 RYCGVETDFN---DDMPHLLSFNLSSGGFDFVVASLMDPNYRPSLMEKDIGGGS--HV-LSFAGSDLVLSPSQWSSHVVG 88 (280)
Q Consensus 15 ~~~G~~~~~~---~dl~~~l~~a~~~~gydfv~~PIt~~~~~~~~~~~d~~~~~--~~-~p~~~sD~~L~~~~w~s~vVg 88 (280)
+.+|+..... -++.+.++.+. +.|||.|=+.+..++-..... +..... .+ .-+...-+.+.+ .-.+
T Consensus 3 ~~~g~~~~~~~~~~~~~e~~~~~~-~~G~~~iEl~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~Gl~i~~-----~~~~ 74 (284)
T PRK13210 3 HPLGIYEKALPKHLSWEERLVFAK-ELGFDFVEMSVDESDERLARL--DWSKEERLSLVKAIYETGVRIPS-----MCLS 74 (284)
T ss_pred cccchhhhhcCCCCCHHHHHHHHH-HcCCCeEEEecCCcccccccc--cCCHHHHHHHHHHHHHcCCCceE-----Eecc
Confidence 3456666433 38899999999 999999988765432110000 000000 00 000000000000 0000
Q ss_pred EecCCCCCCCccHHHHHhHHHHHHHHHHHHhhcCcceeeecCCC------C-CChhHHHHHHHHHHhhc--CcceEEEEE
Q 047961 89 KISSWIDLDSEDEILRMDSETTLKQEISWASHLSLQACLLPSPK------G-ASCANYARCVNQILQSL--NNMQLWLRI 159 (280)
Q Consensus 89 ~~S~WidlDS~d~~ir~~S~~~L~~El~yA~~lgl~aviip~P~------~-~~~~~yAr~i~~~l~~~--~~~~iwI~l 159 (280)
-... ..+.++|+..|+...+.+++=+..|..||.+.|.+++.. . ....++++.++++.... ..+.+.++-
T Consensus 75 ~~~~-~~~~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 75 GHRR-FPFGSRDPATRERALEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred cccC-cCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 0001 245678999999999999999999999999999987421 1 12234555566655333 234444432
Q ss_pred ecccCCCCCCCCCCCCChHHHHHHHHHHhcCCCccEEEEEccCCC----CChhhhhhhcccCceEEEEeCC
Q 047961 160 PLVKNDDDTMDFIPSGDSWELWNSFRLLCEHHSQLSVALDVLSSL----PSANSLGRWLGEPVRAAIIHTD 226 (280)
Q Consensus 160 P~~~~~~~~~~~~~~~~~W~~Wn~iR~lc~y~~~L~VaL~l~~~l----P~~~~~~RWl~EPV~~lii~ts 226 (280)
.... ...+.+.+..+-... .++++++.+++..-. ...+.++. .++-|..+-|.-.
T Consensus 154 --~~~~--------~~~~~~~~~~l~~~v-~~~~~~~~~D~~h~~~~~~~~~~~l~~-~~~~i~~vHikD~ 212 (284)
T PRK13210 154 --MDTP--------FMNSISKWKKWDKEI-DSPWLTVYPDVGNLSAWGNDVWSELKL-GIDHIAAIHLKDT 212 (284)
T ss_pred --cCcc--------ccCCHHHHHHHHHHc-CCCceeEEecCChhhhcCCCHHHHHHH-hcCeEEEEEeccc
Confidence 1110 112333333332222 347888888875311 11222332 4678888877654
No 11
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=83.41 E-value=7.8 Score=35.21 Aligned_cols=215 Identities=11% Similarity=0.108 Sum_probs=113.7
Q ss_pred eecccC---CCCChHHHHHhhhccCCCcEEEeccCCCCCCCcc---ccccCCCCCCC-CCCCCCCcccCCCCCcceEEEE
Q 047961 17 CGVETD---FNDDMPHLLSFNLSSGGFDFVVASLMDPNYRPSL---MEKDIGGGSHV-LSFAGSDLVLSPSQWSSHVVGK 89 (280)
Q Consensus 17 ~G~~~~---~~~dl~~~l~~a~~~~gydfv~~PIt~~~~~~~~---~~~d~~~~~~~-~p~~~sD~~L~~~~w~s~vVg~ 89 (280)
.|+... ...++.+.++.+. +.|||.|=+.+......... ..++. ..+ .-+....+.+.+-. .+.
T Consensus 10 ~~~~~~~~~~~~~~~e~~~~~~-~~G~~~iEl~~~~~~~~~~~~~~~~~~~---~~l~~~l~~~gl~i~~~~-----~~~ 80 (283)
T PRK13209 10 LGIYEKALPAGECWLEKLAIAK-TAGFDFVEMSVDESDERLARLDWSREQR---LALVNALVETGFRVNSMC-----LSA 80 (283)
T ss_pred ceeecccCCCCCCHHHHHHHHH-HcCCCeEEEecCccccchhccCCCHHHH---HHHHHHHHHcCCceeEEe-----ccc
Confidence 565553 3457899999999 99999999976543211000 00000 000 00001111111000 000
Q ss_pred ecCCCCCCCccHHHHHhHHHHHHHHHHHHhhcCcceeeecCCC---CC----ChhHHHHHHHHHHhhcCcceEEEEEecc
Q 047961 90 ISSWIDLDSEDEILRMDSETTLKQEISWASHLSLQACLLPSPK---GA----SCANYARCVNQILQSLNNMQLWLRIPLV 162 (280)
Q Consensus 90 ~S~WidlDS~d~~ir~~S~~~L~~El~yA~~lgl~aviip~P~---~~----~~~~yAr~i~~~l~~~~~~~iwI~lP~~ 162 (280)
-.+ ..+.|+|+..|+...+.+++-++.|..+|.+.|.+++.. +. ...++++.++++........|.|.+-..
T Consensus 81 ~~~-~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~ 159 (283)
T PRK13209 81 HRR-FPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRASVTLAFEIM 159 (283)
T ss_pred ccc-cCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeec
Confidence 001 235678999999999999999999999999999987522 11 1234455566655433333344444322
Q ss_pred cCCCCCCCCCCCCChHHHHHHHHHHhcCCCccEEEEEccCC----CCChhhhhhhcccCceEEEEeCCcc-----ccCCC
Q 047961 163 KNDDDTMDFIPSGDSWELWNSFRLLCEHHSQLSVALDVLSS----LPSANSLGRWLGEPVRAAIIHTDSF-----LTNAR 233 (280)
Q Consensus 163 ~~~~~~~~~~~~~~~W~~Wn~iR~lc~y~~~L~VaL~l~~~----lP~~~~~~RWl~EPV~~lii~ts~F-----~tN~k 233 (280)
... ...+.++.+..++.+ + ++++++.+++..- .+....+.+ +++=|.++-+.-..- +.--.
T Consensus 160 ~~~-------~~~~~~~~~~ll~~v-~-~~~lgl~~D~~h~~~~~~~~~~~i~~-~~~~i~~vHikD~~~~~~~~~~~G~ 229 (283)
T PRK13209 160 DTP-------FMNSISKALGYAHYL-N-SPWFQLYPDIGNLSAWDNDVQMELQA-GIGHIVAFHVKDTKPGVFKNVPFGE 229 (283)
T ss_pred CCc-------ccCCHHHHHHHHHHh-C-CCccceEeccchHHHhcCCHHHHHHh-CcCcEEEEEeccCCCCCCceeCCCC
Confidence 110 023566667766653 2 3789999997631 122333433 456677777754321 00011
Q ss_pred CCcccCHHHHHHHHHHHhcCce
Q 047961 234 GYPCLSRRHQKLITGFLNHSIQ 255 (280)
Q Consensus 234 GyPVLsK~hQ~~i~~~~r~~~~ 255 (280)
| ++ ..+.+++.+-+.+-+
T Consensus 230 G--~i--d~~~i~~~L~~~gy~ 247 (283)
T PRK13209 230 G--VV--DFERCFKTLKQSGYC 247 (283)
T ss_pred C--cc--CHHHHHHHHHHcCCC
Confidence 2 11 356677776665543
No 12
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=80.84 E-value=8.2 Score=35.82 Aligned_cols=132 Identities=17% Similarity=0.199 Sum_probs=80.8
Q ss_pred eeeecccCCC---CChHHHHHhhhccCCCcEEEeccCCCCCCC-ccc--ccc--------CCCCCCCCCCCCCCcccCCC
Q 047961 15 RYCGVETDFN---DDMPHLLSFNLSSGGFDFVVASLMDPNYRP-SLM--EKD--------IGGGSHVLSFAGSDLVLSPS 80 (280)
Q Consensus 15 ~~~G~~~~~~---~dl~~~l~~a~~~~gydfv~~PIt~~~~~~-~~~--~~d--------~~~~~~~~p~~~sD~~L~~~ 80 (280)
--+|+.+..+ -.-.+-+..|. +.|||||=+.|--..-|. |+. .++ ...+-++|....|-.
T Consensus 5 h~lGIYEKAlp~~~sW~erl~~AK-~~GFDFvEmSvDEsDeRLaRLDWs~~er~~l~~ai~etgv~ipSmClSaH----- 78 (287)
T COG3623 5 HPLGIYEKALPNGFSWLERLALAK-ELGFDFVEMSVDESDERLARLDWSKEERLALVNAIQETGVRIPSMCLSAH----- 78 (287)
T ss_pred cccceehhhccCCCCHHHHHHHHH-HcCCCeEEEeccchHHHHHhcCCCHHHHHHHHHHHHHhCCCccchhhhhh-----
Confidence 3478877422 33467788888 999999988876432221 100 000 000112333322210
Q ss_pred CCcceEEEEecCCCCCCCccHHHHHhHHHHHHHHHHHHhhcCcceeeecCC------CC-CChhHHHHHHHHHHhhcCcc
Q 047961 81 QWSSHVVGKISSWIDLDSEDEILRMDSETTLKQEISWASHLSLQACLLPSP------KG-ASCANYARCVNQILQSLNNM 153 (280)
Q Consensus 81 ~w~s~vVg~~S~WidlDS~d~~ir~~S~~~L~~El~yA~~lgl~aviip~P------~~-~~~~~yAr~i~~~l~~~~~~ 153 (280)
.=.-+.|.|+.+|..+.+++++-+.-|.-||++.|-+.+= .+ ....++..-+..+..-....
T Consensus 79 -----------RRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a~~lA~~a 147 (287)
T COG3623 79 -----------RRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWAVELAARA 147 (287)
T ss_pred -----------ccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHHHHHHHhh
Confidence 0135679999999999999999999999999999888752 22 23445555566555555556
Q ss_pred eEEEEEeccc
Q 047961 154 QLWLRIPLVK 163 (280)
Q Consensus 154 ~iwI~lP~~~ 163 (280)
++-+.+.+.+
T Consensus 148 qV~lAvEiMD 157 (287)
T COG3623 148 QVMLAVEIMD 157 (287)
T ss_pred ccEEEeeecc
Confidence 6666666554
No 13
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=77.19 E-value=13 Score=33.85 Aligned_cols=179 Identities=15% Similarity=0.160 Sum_probs=94.4
Q ss_pred CCChHHHHHhhhccCCCcEEEeccCCCCCCCccc---cccCCCCCCCCCCCCCCcccCCCCCcceEEEEecCC--CCCCC
Q 047961 24 NDDMPHLLSFNLSSGGFDFVVASLMDPNYRPSLM---EKDIGGGSHVLSFAGSDLVLSPSQWSSHVVGKISSW--IDLDS 98 (280)
Q Consensus 24 ~~dl~~~l~~a~~~~gydfv~~PIt~~~~~~~~~---~~d~~~~~~~~p~~~sD~~L~~~~w~s~vVg~~S~W--idlDS 98 (280)
-..+.+.++.+. +.|||.|=+++..++...... .++.. .-..-+....+.+.+- -++.+ ..+.+
T Consensus 15 ~~~~~e~l~~~~-~~G~~~VEl~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~gl~i~~~--------~~~~~~~~~l~~ 83 (279)
T TIGR00542 15 GECWLERLQLAK-TCGFDFVEMSVDETDDRLSRLDWSREQRL--ALVNAIIETGVRIPSM--------CLSAHRRFPLGS 83 (279)
T ss_pred CCCHHHHHHHHH-HcCCCEEEEecCCccchhhccCCCHHHHH--HHHHHHHHcCCCceee--------ecCCCccCcCCC
Confidence 367899999999 999999999876543221110 00000 0000011111111111 01121 24567
Q ss_pred ccHHHHHhHHHHHHHHHHHHhhcCcceeeecCCC---CC----ChhHHHHHHHHHHhhc--CcceEEEEEecccCCCCCC
Q 047961 99 EDEILRMDSETTLKQEISWASHLSLQACLLPSPK---GA----SCANYARCVNQILQSL--NNMQLWLRIPLVKNDDDTM 169 (280)
Q Consensus 99 ~d~~ir~~S~~~L~~El~yA~~lgl~aviip~P~---~~----~~~~yAr~i~~~l~~~--~~~~iwI~lP~~~~~~~~~ 169 (280)
+|+.+|+.+.+.+++-+..|..+|.+.|.+++.. .. ...++++.++++.... ..+.+-++. ....
T Consensus 84 ~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~--~~~~---- 157 (279)
T TIGR00542 84 KDKAVRQQGLEIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI--MDTP---- 157 (279)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee--CCCc----
Confidence 7899999999999999999999999999988631 11 1334555555554322 234445442 1110
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCccEEEEEccCCC----CChhhhhhhcccCceEEEEeC
Q 047961 170 DFIPSGDSWELWNSFRLLCEHHSQLSVALDVLSSL----PSANSLGRWLGEPVRAAIIHT 225 (280)
Q Consensus 170 ~~~~~~~~W~~Wn~iR~lc~y~~~L~VaL~l~~~l----P~~~~~~RWl~EPV~~lii~t 225 (280)
...+=..+-.+-...+ ++++++.+++..-. ...+.+. =.++=|..+-+.-
T Consensus 158 ----~~~t~~~~~~li~~v~-~~~v~~~~D~~h~~~~~~~~~~~i~-~~~~~i~~vHikD 211 (279)
T TIGR00542 158 ----FMSSISKWLKWDHYLN-SPWFTLYPDIGNLSAWDNDVQMELQ-LGIDKIVAIHLKD 211 (279)
T ss_pred ----hhcCHHHHHHHHHHcC-CCceEEEeCcChhhhccCCHHHHHH-HhhhhEEEEEeCC
Confidence 0011122222222233 47899999887421 1123343 2356677776653
No 14
>KOG3997 consensus Major apurinic/apyrimidinic endonuclease/3'-repair diesterase APN1 [Replication, recombination and repair]
Probab=74.81 E-value=14 Score=34.09 Aligned_cols=165 Identities=12% Similarity=0.126 Sum_probs=104.7
Q ss_pred eeecccCCCCChHHHHHhhhccCCCcEEEeccCCCC-CCCcccccc----C--CCCCCCCCCCCCCcccCCCCCcceEEE
Q 047961 16 YCGVETDFNDDMPHLLSFNLSSGGFDFVVASLMDPN-YRPSLMEKD----I--GGGSHVLSFAGSDLVLSPSQWSSHVVG 88 (280)
Q Consensus 16 ~~G~~~~~~~dl~~~l~~a~~~~gydfv~~PIt~~~-~~~~~~~~d----~--~~~~~~~p~~~sD~~L~~~~w~s~vVg 88 (280)
++|-|..-..-+.+.+-.+. ..|.+-.++=+-++| |...+..++ + .+....+| ..+||.
T Consensus 4 ~~gahms~a~gi~~~~~n~~-~~g~ns~AmFvksqRkw~sp~msee~ae~f~kaa~~~~~~-------------l~qivp 69 (281)
T KOG3997|consen 4 TLGAHMSAAGGIEQAIYNAF-AEGCNSCAMFVKSQRKWNSPPMSEEVAEKFWKAARETNFP-------------LDQIVP 69 (281)
T ss_pred hhhhhhhccccHHHHHHHHH-HhccchHHHHHhCccccCCCCccHHHHHHHHHHHHhccCc-------------hhhccc
Confidence 36777766677777777777 777765555444332 111110000 0 00001222 234555
Q ss_pred EecCCCCCCCccHHHHHhHHHHHHHHHHHHhhcCcceeeecC-C-----CCCChhHHHHHHHHHHhhcCcceEEEEEecc
Q 047961 89 KISSWIDLDSEDEILRMDSETTLKQEISWASHLSLQACLLPS-P-----KGASCANYARCVNQILQSLNNMQLWLRIPLV 162 (280)
Q Consensus 89 ~~S~WidlDS~d~~ir~~S~~~L~~El~yA~~lgl~aviip~-P-----~~~~~~~yAr~i~~~l~~~~~~~iwI~lP~~ 162 (280)
.=|--|++.+||..-++.|.+.+.-+|+-+.-||+.--=+-| - +...+.++|..||.++...-.+.|.+.= |
T Consensus 70 HGsYliN~~npd~ek~eks~~~~vDdl~Rce~LGIgmYN~HPGSt~~~~kee~l~~ia~~in~a~eetk~V~ivlEn-M- 147 (281)
T KOG3997|consen 70 HGSYLINAGNPDAEKLEKSRECFVDDLQRCEKLGIGMYNFHPGSTVGKEKEECLTTIAETINFAVEETKNVIIVLEN-M- 147 (281)
T ss_pred ccchhcccCCccHHHHHHHHHHHHHHHHHHHHhCceeeecCCCccccccHHHHHHHHHHHHHHHHHhccceEEEeec-c-
Confidence 556678999999999999999999999999999986554432 1 1235778999999999776655444321 1
Q ss_pred cCCCCCCCCCCCCChHHHHHHHHHHhcCCCccEEEEEcc
Q 047961 163 KNDDDTMDFIPSGDSWELWNSFRLLCEHHSQLSVALDVL 201 (280)
Q Consensus 163 ~~~~~~~~~~~~~~~W~~Wn~iR~lc~y~~~L~VaL~l~ 201 (280)
+.+.....++.+.-..+-..-+-.+|++|+|+--
T Consensus 148 -----AGqGn~vG~tfeelk~ii~~Ikdk~RigVClDTC 181 (281)
T KOG3997|consen 148 -----AGQGNSVGGTFEELKFIIGKIKDKSRIGVCLDTC 181 (281)
T ss_pred -----cCCCCcccccHHHHHHHHHhhcchhhheeeHhhh
Confidence 1111124468887777777777789999998754
No 15
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=65.02 E-value=2.2 Score=25.39 Aligned_cols=15 Identities=27% Similarity=0.607 Sum_probs=13.0
Q ss_pred eccCCCCccccCCce
Q 047961 259 SGKLNQWCSQCELGF 273 (280)
Q Consensus 259 ~g~~~~~~~~~~~~~ 273 (280)
+|...+.|++|++.|
T Consensus 10 ~~~k~~~C~~C~k~F 24 (26)
T PF13465_consen 10 TGEKPYKCPYCGKSF 24 (26)
T ss_dssp SSSSSEEESSSSEEE
T ss_pred CCCCCCCCCCCcCee
Confidence 577789999999988
No 16
>PRK12677 xylose isomerase; Provisional
Probab=62.62 E-value=93 Score=30.40 Aligned_cols=126 Identities=12% Similarity=0.094 Sum_probs=76.3
Q ss_pred CCCCccHHHHHhHHHHHHHHHHHHhhcCcceeee-cCCCCC------C----hhHHHHHHHHHHhhc----CcceEEEEE
Q 047961 95 DLDSEDEILRMDSETTLKQEISWASHLSLQACLL-PSPKGA------S----CANYARCVNQILQSL----NNMQLWLRI 159 (280)
Q Consensus 95 dlDS~d~~ir~~S~~~L~~El~yA~~lgl~avii-p~P~~~------~----~~~yAr~i~~~l~~~----~~~~iwI~l 159 (280)
.+-|+|+.+|+.+.+.+++=+.+|+-||.+.|++ ++..+. + ...+...|+++..-. ..+++.|.-
T Consensus 100 ~lts~d~~~R~~Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laIEp 179 (384)
T PRK12677 100 AFTSNDRDVRRYALRKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFALEP 179 (384)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEcc
Confidence 5678899999999999999999999999999888 441111 1 122334444444322 225555442
Q ss_pred ecccCCCCCCCCCCCCChHHHHHHHHHHhcCCCccEEEEEccCC-C---CChhhhhhhcc-cCceEEEEeC
Q 047961 160 PLVKNDDDTMDFIPSGDSWELWNSFRLLCEHHSQLSVALDVLSS-L---PSANSLGRWLG-EPVRAAIIHT 225 (280)
Q Consensus 160 P~~~~~~~~~~~~~~~~~W~~Wn~iR~lc~y~~~L~VaL~l~~~-l---P~~~~~~RWl~-EPV~~lii~t 225 (280)
. +.+... .....+++.+..+-...+....++|.+++... + ...+.+.+.+. .=+..+-+..
T Consensus 180 --k-p~ep~~--~~~l~t~~~al~li~~lg~~~~vGv~lD~gH~~m~g~n~~~~i~~~l~~~kL~HvHlnD 245 (384)
T PRK12677 180 --K-PNEPRG--DILLPTVGHALAFIATLEHPEMVGLNPEVGHEQMAGLNFTHGIAQALWAGKLFHIDLNG 245 (384)
T ss_pred --C-CCCCCC--CeeeCCHHHHHHHHHHhCCCccEEEeeechHHHhcCCCHHHHHHHHHhCCcEEEEEecC
Confidence 1 111000 00236787777766666665579999999854 2 22344555443 4566666655
No 17
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=48.62 E-value=54 Score=29.46 Aligned_cols=180 Identities=15% Similarity=0.165 Sum_probs=94.5
Q ss_pred CChHHHHHhhhccCCCcEEEeccCCCCC-CCccccccCCCCCCCC-CCCCCCcccCCCCCcceEEEEe----cCCCCCCC
Q 047961 25 DDMPHLLSFNLSSGGFDFVVASLMDPNY-RPSLMEKDIGGGSHVL-SFAGSDLVLSPSQWSSHVVGKI----SSWIDLDS 98 (280)
Q Consensus 25 ~dl~~~l~~a~~~~gydfv~~PIt~~~~-~~~~~~~d~~~~~~~~-p~~~sD~~L~~~~w~s~vVg~~----S~WidlDS 98 (280)
.++.+.++.+. +.|||.|=+-...++. .......+ . ...- -+. +..| .|++.. +-+..+-+
T Consensus 13 ~~l~~~l~~~~-~~G~~~vEl~~~~~~~~~~~~~~~~--~-~~l~~~~~--~~gl-------~v~s~~~~~~~~~~~~~~ 79 (275)
T PRK09856 13 LPIEHAFRDAS-ELGYDGIEIWGGRPHAFAPDLKAGG--I-KQIKALAQ--TYQM-------PIIGYTPETNGYPYNMML 79 (275)
T ss_pred CCHHHHHHHHH-HcCCCEEEEccCCccccccccCchH--H-HHHHHHHH--HcCC-------eEEEecCcccCcCccccC
Confidence 47899999999 9999999985433321 11100000 0 0000 000 0000 111111 11234445
Q ss_pred ccHHHHHhHHHHHHHHHHHHhhcCcceeeecCCCC-------CChhHHHHHHHHHHhh--cCcceEEEEEecccCCCCCC
Q 047961 99 EDEILRMDSETTLKQEISWASHLSLQACLLPSPKG-------ASCANYARCVNQILQS--LNNMQLWLRIPLVKNDDDTM 169 (280)
Q Consensus 99 ~d~~ir~~S~~~L~~El~yA~~lgl~aviip~P~~-------~~~~~yAr~i~~~l~~--~~~~~iwI~lP~~~~~~~~~ 169 (280)
+++..|+.+.+.+++-++.|+.+|.+.|++.+-.. ....++++.++++..- ...+++-++- +. +.+..
T Consensus 80 ~~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~-~~-~~~~~- 156 (275)
T PRK09856 80 GDEHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLILEP-LT-PYESN- 156 (275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEec-CC-CCccc-
Confidence 67889999999999999999999999998854211 1223445555555432 2345555541 11 10000
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCccEEEEEccCCCCCh----hhhhhhcccCceEEEEeCC
Q 047961 170 DFIPSGDSWELWNSFRLLCEHHSQLSVALDVLSSLPSA----NSLGRWLGEPVRAAIIHTD 226 (280)
Q Consensus 170 ~~~~~~~~W~~Wn~iR~lc~y~~~L~VaL~l~~~lP~~----~~~~RWl~EPV~~lii~ts 226 (280)
...+.-+....++.+ + ++++++.+++....-.. +.+++ +++=|..+-|.-.
T Consensus 157 ---~~~t~~~~~~l~~~~-~-~~~v~~~~D~~h~~~~~~~~~~~i~~-~~~rI~~vHi~D~ 211 (275)
T PRK09856 157 ---VVCNANDVLHALALV-P-SPRLFSMVDICAPYVQAEPVMSYFDK-LGDKLRHLHIVDS 211 (275)
T ss_pred ---ccCCHHHHHHHHHHc-C-CCcceeEEeecchhcCCCCHHHHHHH-hCCcEEEEEEEcC
Confidence 011233444444432 2 46799999887532121 22333 5777888888754
No 18
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=44.52 E-value=75 Score=31.05 Aligned_cols=126 Identities=10% Similarity=0.055 Sum_probs=70.0
Q ss_pred CCCCccHHHHHhHHHHHHHHHHHHhhcCcceeee-cCCCCC----------ChhHHHHHHHHHHhhcC----cceEEEEE
Q 047961 95 DLDSEDEILRMDSETTLKQEISWASHLSLQACLL-PSPKGA----------SCANYARCVNQILQSLN----NMQLWLRI 159 (280)
Q Consensus 95 dlDS~d~~ir~~S~~~L~~El~yA~~lgl~avii-p~P~~~----------~~~~yAr~i~~~l~~~~----~~~iwI~l 159 (280)
.+-|+|+.+|+.+.+.+++=+.+|.-||.+.|.+ ++-.+. ...++++.|.++..-.. .+++.|.-
T Consensus 101 ~las~d~~vR~~ai~~~kraId~A~eLGa~~v~v~~G~~g~~~~~~~d~~~a~~~~~e~L~~lae~A~~~G~GV~laLEp 180 (382)
T TIGR02631 101 GFTSNDRSVRRYALRKVLRNMDLGAELGAETYVVWGGREGAEYDGAKDVRAALDRMREALNLLAAYAEDQGYGLRFALEP 180 (382)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEccCCCCCcCccccCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcc
Confidence 5678899999999999999999999999998777 331111 12334455555442221 24444432
Q ss_pred ecccCCCCCCCCCCCCChHHHHHHHHHHhcCCCccEEEEEccCC-CC---Chhhhhhhc-ccCceEEEEeC
Q 047961 160 PLVKNDDDTMDFIPSGDSWELWNSFRLLCEHHSQLSVALDVLSS-LP---SANSLGRWL-GEPVRAAIIHT 225 (280)
Q Consensus 160 P~~~~~~~~~~~~~~~~~W~~Wn~iR~lc~y~~~L~VaL~l~~~-lP---~~~~~~RWl-~EPV~~lii~t 225 (280)
..+ +... .....+.+..-.+-...++...++|.|++... +- ....+.+.+ +.=+..+-+..
T Consensus 181 --~p~-~~~~--~~ll~T~~~al~li~~v~~pn~vgl~lDvgH~~~~g~n~~~~i~~~l~~~kl~HvhlnD 246 (382)
T TIGR02631 181 --KPN-EPRG--DILLPTVGHALAFIETLERPELFGLNPETGHEQMAGLNFTHGIAQALWAGKLFHIDLNG 246 (382)
T ss_pred --CCC-CCCc--ceecCCHHHHHHHHHHcCCccceeEEEechhHhhcCCCHHHHHHHHHhCCCEEEEecCC
Confidence 111 0000 00224555555555555554447999999853 21 223445443 33355555443
No 19
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=44.40 E-value=2.7e+02 Score=27.38 Aligned_cols=107 Identities=15% Similarity=0.155 Sum_probs=66.2
Q ss_pred CCCCccHHHHHhHHHHHHHHHHHHhhcCcceeeecCCCC---CC-------hhHHHHHHHHHHhhc-CcceEEEEEeccc
Q 047961 95 DLDSEDEILRMDSETTLKQEISWASHLSLQACLLPSPKG---AS-------CANYARCVNQILQSL-NNMQLWLRIPLVK 163 (280)
Q Consensus 95 dlDS~d~~ir~~S~~~L~~El~yA~~lgl~aviip~P~~---~~-------~~~yAr~i~~~l~~~-~~~~iwI~lP~~~ 163 (280)
.+.+||+.+|+.+.+-+++=+..|.-+|-+.|.|=+|.+ .. ...+...+.++.... ..+.+.|.=..+.
T Consensus 102 SLt~pD~~vR~~AIe~~k~~idiA~eLGa~~I~iW~~DG~~~~g~~~~~~a~~rl~esL~eI~~~~~~~v~~~iE~Kp~E 181 (378)
T TIGR02635 102 SLTHPDKRIRRKAIDHLLECVDIAKKTGSKDISLWLADGTNYPGQDDFRSRKDRLEESLAEVYEHLGADMRLLIEYKFFE 181 (378)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEecCCcCcCCcccCHHHHHHHHHHHHHHHHHhCcCCCEEEEecCCCC
Confidence 577899999999999999999999999999875433332 12 234555666666332 3455555443332
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHhc-CCCccEEEEEccCCCCChh
Q 047961 164 NDDDTMDFIPSGDSWELWNSFRLLCE-HHSQLSVALDVLSSLPSAN 208 (280)
Q Consensus 164 ~~~~~~~~~~~~~~W~~Wn~iR~lc~-y~~~L~VaL~l~~~lP~~~ 208 (280)
+. .. ...-+.|...-.+|. -..+++|.|++..-.|.+.
T Consensus 182 p~-~y------~t~~~~~~~~l~l~~~lg~~~~v~lD~GH~~~~En 220 (378)
T TIGR02635 182 PA-FY------HTDIPDWGTAYALSEKLGERALVLVDTGHHAQGTN 220 (378)
T ss_pred Cc-ee------eecCCcHHHHHHHHHhhCCCceEEeecCccCCCCC
Confidence 21 00 011244454444452 2345799999998776553
No 20
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=41.44 E-value=33 Score=28.80 Aligned_cols=52 Identities=19% Similarity=0.220 Sum_probs=38.0
Q ss_pred CCCccHHHHHhHHHHHHHHHHHHhhcCcceeeecCC---C--C----CChhHHHHHHHHHHhh
Q 047961 96 LDSEDEILRMDSETTLKQEISWASHLSLQACLLPSP---K--G----ASCANYARCVNQILQS 149 (280)
Q Consensus 96 lDS~d~~ir~~S~~~L~~El~yA~~lgl~aviip~P---~--~----~~~~~yAr~i~~~l~~ 149 (280)
.++.++ |..+.+.+++.+..|.-+|.+.+++.++ . . ....++++.++++...
T Consensus 60 ~~~~~~--r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~ 120 (213)
T PF01261_consen 60 GSANDE--REEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEI 120 (213)
T ss_dssp TTSSSH--HHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHH
T ss_pred cCcchh--hHHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhh
Confidence 445666 9999999999999999999999999864 1 1 1344455555665543
No 21
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=36.31 E-value=15 Score=25.44 Aligned_cols=17 Identities=41% Similarity=1.034 Sum_probs=14.5
Q ss_pred ccCCCCccccCCceeec
Q 047961 260 GKLNQWCSQCELGFCFR 276 (280)
Q Consensus 260 g~~~~~~~~~~~~~~~~ 276 (280)
+...-.|+.|+..||++
T Consensus 37 ~~~~v~C~~C~~~fC~~ 53 (64)
T smart00647 37 GCNRVTCPKCGFSFCFR 53 (64)
T ss_pred CCCeeECCCCCCeECCC
Confidence 56677899999999986
No 22
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=32.95 E-value=20 Score=21.62 Aligned_cols=12 Identities=25% Similarity=0.933 Sum_probs=8.9
Q ss_pred CCCCccccCCce
Q 047961 262 LNQWCSQCELGF 273 (280)
Q Consensus 262 ~~~~~~~~~~~~ 273 (280)
....||.||+.|
T Consensus 13 ~~~~Cp~CG~~F 24 (26)
T PF10571_consen 13 SAKFCPHCGYDF 24 (26)
T ss_pred hcCcCCCCCCCC
Confidence 345688898887
No 23
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=28.55 E-value=1.1e+02 Score=31.67 Aligned_cols=69 Identities=23% Similarity=0.256 Sum_probs=48.5
Q ss_pred HHHHHHhhcCcceEEEEEecccCCCCCCCCCCCCChHHHHHHHHHHhc------------C--CCccEEEEEccCCCCCh
Q 047961 142 CVNQILQSLNNMQLWLRIPLVKNDDDTMDFIPSGDSWELWNSFRLLCE------------H--HSQLSVALDVLSSLPSA 207 (280)
Q Consensus 142 ~i~~~l~~~~~~~iwI~lP~~~~~~~~~~~~~~~~~W~~Wn~iR~lc~------------y--~~~L~VaL~l~~~lP~~ 207 (280)
.|+.++....+-++.|-+||. .+-+.+..+|.+++ + +-.||+++|+| +.
T Consensus 374 QLRAilRAS~~G~l~IM~PMI-------------~~~~Ei~~~k~~~~~~k~~Lr~eg~~~~~~i~lGiMIEvP----sA 436 (574)
T COG1080 374 QLRAILRASAHGNLRIMFPMI-------------ASLEEIRWAKALLEEAKQELRAEGLAFDEKIELGIMIEVP----SA 436 (574)
T ss_pred HHHHHHHhhccCCeEEEEecc-------------ccHHHHHHHHHHHHHHHHHHHhcCCccccccceeEEEehh----HH
Confidence 355566666778899999998 34555555555553 2 45889999997 45
Q ss_pred hhhhhhcccCceEEEEeCCc
Q 047961 208 NSLGRWLGEPVRAAIIHTDS 227 (280)
Q Consensus 208 ~~~~RWl~EPV~~lii~ts~ 227 (280)
-++-.=+++=|.++-|-|+=
T Consensus 437 a~~a~~lakevDFfSIGTND 456 (574)
T COG1080 437 ALIADQLAKEVDFFSIGTND 456 (574)
T ss_pred HHHHHHHHHhCCEeeecccH
Confidence 55666677778899888764
No 24
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=28.36 E-value=21 Score=19.87 Aligned_cols=12 Identities=25% Similarity=0.625 Sum_probs=9.4
Q ss_pred CccccCCceeec
Q 047961 265 WCSQCELGFCFR 276 (280)
Q Consensus 265 ~~~~~~~~~~~~ 276 (280)
.|+.|++.|=.+
T Consensus 2 ~C~~C~~~f~~~ 13 (23)
T PF00096_consen 2 KCPICGKSFSSK 13 (23)
T ss_dssp EETTTTEEESSH
T ss_pred CCCCCCCccCCH
Confidence 589999998544
No 25
>TIGR03527 selenium_YedF selenium metabolism protein YedF. Members of this protein family are about 200 amino acids in size, and include the uncharacterized YedF protein of Escherichia coli. This family shares an N-terminal domain, modeled by pfam01206, with the sulfurtransferase TusA (also called SirA). The C-terminal domain includes a typical redox-active disulfide motif, CGXC. This protein family found only among those genomes that also carry the selenium donor protein SelD, and its connection to selenium metabolism is indicated by the method of partial phylogenetic profiling vs. SelD. Its gene typically is found next to selD. Members of this family are found even when selenocysteine and selenouridine biosynthesis pathways are, except for SelD, completely absent, as in Enterococcus faecalis. Its role in selenium metabolism is unclear, but may include either detoxification or a role in labile selenoprotein biosynthesis.
Probab=27.90 E-value=88 Score=27.71 Aligned_cols=43 Identities=14% Similarity=0.197 Sum_probs=36.6
Q ss_pred cCceEEEEeCCccccCCCCCcccCHHHHHHHHHHHhcCceEEEeccCCC
Q 047961 216 EPVRAAIIHTDSFLTNARGYPCLSRRHQKLITGFLNHSIQVVISGKLNQ 264 (280)
Q Consensus 216 EPV~~lii~ts~F~tN~kGyPVLsK~hQ~~i~~~~r~~~~iil~g~~~~ 264 (280)
.|.+-++++..+++++ .|++ .++.|+.+.+.++.|+.-|+|-+
T Consensus 120 ~p~~Ifl~n~gV~l~~-~~~~-----~~e~Lk~L~~~Gv~I~~CGtCl~ 162 (194)
T TIGR03527 120 LPKRILFVNGGVKLTT-EGSE-----VLEDLKELEKKGVEILSCGTCLD 162 (194)
T ss_pred CceEEEEEccceeecc-CCch-----HHHHHHHHHHCCCEEEEeHHHHH
Confidence 3899999999999998 5665 46789999999999999998754
No 26
>PF07014 Hs1pro-1_C: Hs1pro-1 protein C-terminus; InterPro: IPR009743 This entry represents the C terminus (approximately 270 residues) of a number of plant Hs1pro-1 proteins, which are believed to confer nematode resistance [].
Probab=25.97 E-value=20 Score=32.80 Aligned_cols=25 Identities=32% Similarity=0.596 Sum_probs=17.8
Q ss_pred HHHHhcCceEEEeccCCCCccccCCceeecc
Q 047961 247 TGFLNHSIQVVISGKLNQWCSQCELGFCFRP 277 (280)
Q Consensus 247 ~~~~r~~~~iil~g~~~~~~~~~~~~~~~~~ 277 (280)
-.|+|++-|.-++..+.. -.|||||
T Consensus 112 dDFlrLK~qL~iks~~~~------~afCfRS 136 (261)
T PF07014_consen 112 DDFLRLKKQLAIKSAPET------AAFCFRS 136 (261)
T ss_pred HHHHHHHHHhccccCCCC------cchhhhH
Confidence 467888888877655532 3899997
No 27
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=24.32 E-value=33 Score=18.56 Aligned_cols=12 Identities=25% Similarity=0.584 Sum_probs=7.2
Q ss_pred CccccCCceeec
Q 047961 265 WCSQCELGFCFR 276 (280)
Q Consensus 265 ~~~~~~~~~~~~ 276 (280)
.|++|++.|--+
T Consensus 2 ~C~~C~~~~~~~ 13 (24)
T PF13894_consen 2 QCPICGKSFRSK 13 (24)
T ss_dssp E-SSTS-EESSH
T ss_pred CCcCCCCcCCcH
Confidence 589999887543
No 28
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=24.14 E-value=34 Score=23.57 Aligned_cols=13 Identities=38% Similarity=1.124 Sum_probs=11.5
Q ss_pred CCccccCCceeec
Q 047961 264 QWCSQCELGFCFR 276 (280)
Q Consensus 264 ~~~~~~~~~~~~~ 276 (280)
-.|+.|+..||++
T Consensus 41 ~~C~~C~~~fC~~ 53 (64)
T PF01485_consen 41 VTCPSCGTEFCFK 53 (64)
T ss_dssp CCTTSCCSEECSS
T ss_pred eECCCCCCcCccc
Confidence 5799999999985
No 29
>smart00355 ZnF_C2H2 zinc finger.
Probab=23.70 E-value=37 Score=18.42 Aligned_cols=13 Identities=23% Similarity=0.560 Sum_probs=10.1
Q ss_pred CccccCCceeecc
Q 047961 265 WCSQCELGFCFRP 277 (280)
Q Consensus 265 ~~~~~~~~~~~~~ 277 (280)
.|++|++.|--+.
T Consensus 2 ~C~~C~~~f~~~~ 14 (26)
T smart00355 2 RCPECGKVFKSKS 14 (26)
T ss_pred CCCCCcchhCCHH
Confidence 5999999986543
No 30
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=22.84 E-value=64 Score=30.53 Aligned_cols=30 Identities=27% Similarity=0.674 Sum_probs=25.5
Q ss_pred hhhhhhhcccCceEEEEeCCccc-----------cCCCCCcc
Q 047961 207 ANSLGRWLGEPVRAAIIHTDSFL-----------TNARGYPC 237 (280)
Q Consensus 207 ~~~~~RWl~EPV~~lii~ts~F~-----------tN~kGyPV 237 (280)
+..++||..-| +.-+++++-|+ .++||+|-
T Consensus 103 ~~ll~~~~~~~-~v~lvpmDGFhy~n~~L~~~glm~rKGfPe 143 (283)
T COG1072 103 QALLSRWPESP-KVDLVTMDGFHYPNAVLDERGLMARKGFPE 143 (283)
T ss_pred HHHHhhCCCCC-ceEEEeccccccCHhHhhhccccccCCCCc
Confidence 35789999999 99999999996 35699995
No 31
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=21.91 E-value=5.5e+02 Score=22.56 Aligned_cols=180 Identities=13% Similarity=0.125 Sum_probs=97.8
Q ss_pred CCChHHHHHhhhccCCCcEEEeccCCCCCCCccccccCCCCCCCCCCCCCCcccCCCCCcceEEEEecCCCC-CCCccHH
Q 047961 24 NDDMPHLLSFNLSSGGFDFVVASLMDPNYRPSLMEKDIGGGSHVLSFAGSDLVLSPSQWSSHVVGKISSWID-LDSEDEI 102 (280)
Q Consensus 24 ~~dl~~~l~~a~~~~gydfv~~PIt~~~~~~~~~~~d~~~~~~~~p~~~sD~~L~~~~w~s~vVg~~S~Wid-lDS~d~~ 102 (280)
...+.+.++.+. +.|||.|=+.- +..+-..... ..+ ...-..-....+..+++.-+ .-++++.
T Consensus 14 ~~~l~~~l~~~~-~~G~~gvEi~~-~~~~~~~~~~-------------~~~-l~~~l~~~gl~i~~~~~~~~~~~~~~~~ 77 (274)
T COG1082 14 ELPLEEILRKAA-ELGFDGVELSP-GDLFPADYKE-------------LAE-LKELLADYGLEITSLAPFSNNLLSPDEE 77 (274)
T ss_pred CCCHHHHHHHHH-HhCCCeEecCC-cccCCchhhh-------------HHH-HHHHHHHcCcEEEeecccCCCcCCCchh
Confidence 467778899998 99999887765 2222211000 000 00000011222333344444 5677888
Q ss_pred HHHhHHHHHHHHHHHHhhcCcceeeecCCCC--CCh--------hHHHHHHHHHHhhcCcceEEEEEecccCCCCCCCCC
Q 047961 103 LRMDSETTLKQEISWASHLSLQACLLPSPKG--ASC--------ANYARCVNQILQSLNNMQLWLRIPLVKNDDDTMDFI 172 (280)
Q Consensus 103 ir~~S~~~L~~El~yA~~lgl~aviip~P~~--~~~--------~~yAr~i~~~l~~~~~~~iwI~lP~~~~~~~~~~~~ 172 (280)
.+..+.+.++.-++-|..+|.+.+++..... ... .+.++.+.++..-.-.. .+.+-+....-...
T Consensus 78 ~~~~~~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~--~i~l~~e~~~~~~~--- 152 (274)
T COG1082 78 EREEALEELKRAIELAKELGAKVVVVHPGLGAGADDPDSPEEARERWAEALEELAEIAEEL--GIGLALENHHHPGN--- 152 (274)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCeEEeecccCCcCCCCCCCcccHHHHHHHHHHHHHHHHHh--CCceEEeecCCccc---
Confidence 8888999999999999999999888665321 111 34555555554321111 22222221000000
Q ss_pred CCCChHHHHHHHHHHhcCCCccEEEEEccCCCCC----hhhhhhhcccCceEEEEeCCc
Q 047961 173 PSGDSWELWNSFRLLCEHHSQLSVALDVLSSLPS----ANSLGRWLGEPVRAAIIHTDS 227 (280)
Q Consensus 173 ~~~~~W~~Wn~iR~lc~y~~~L~VaL~l~~~lP~----~~~~~RWl~EPV~~lii~ts~ 227 (280)
...+.-+.+..++...+. ++++.|+...-.=. .+.+.+... =|..+-+.-.-
T Consensus 153 ~~~~~~~~~~~~~~~~~~--~v~~~lD~~H~~~~~~d~~~~~~~~~~-rI~hvH~kD~~ 208 (274)
T COG1082 153 VVETGADALDLLREVDSP--NVGLLLDTGHAFFAGEDPLEAIRKLGD-RIGHVHLKDAD 208 (274)
T ss_pred eeecCHHHHHHHHhcCCC--ceEEEEecCchhhccCCHHHHHHHhhc-ceeEEEEeecC
Confidence 022344578888876655 89999999842222 344555555 56666665554
No 32
>PF11152 DUF2930: Protein of unknown function (DUF2930); InterPro: IPR021325 This family of proteins has no known function.
Probab=21.46 E-value=58 Score=29.14 Aligned_cols=15 Identities=40% Similarity=0.647 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhhcCc
Q 047961 109 TTLKQEISWASHLSL 123 (280)
Q Consensus 109 ~~L~~El~yA~~lgl 123 (280)
+++++||+||+|.=+
T Consensus 75 ~~~k~ELAWas~~LL 89 (195)
T PF11152_consen 75 DAAKEELAWASYALL 89 (195)
T ss_pred HHHHHHHHHHHHHHH
Confidence 489999999999643
No 33
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=21.26 E-value=4.7e+02 Score=23.62 Aligned_cols=111 Identities=11% Similarity=0.172 Sum_probs=56.8
Q ss_pred HHHHHHHhhc---CcceeeecCCCCCChhHHHHHHHHHHhhcCcceEEEEEecccCCCCCCCCCCCCChHHHHHHHHHHh
Q 047961 112 KQEISWASHL---SLQACLLPSPKGASCANYARCVNQILQSLNNMQLWLRIPLVKNDDDTMDFIPSGDSWELWNSFRLLC 188 (280)
Q Consensus 112 ~~El~yA~~l---gl~aviip~P~~~~~~~yAr~i~~~l~~~~~~~iwI~lP~~~~~~~~~~~~~~~~~W~~Wn~iR~lc 188 (280)
---=.||..| |....-+......+...|...|.+++.....-.|.+.-| ..|..-..++..|
T Consensus 49 saMRhfa~~L~~~G~~V~Y~~~~~~~~~~s~~~~L~~~~~~~~~~~~~~~~P---------------~d~~l~~~l~~~~ 113 (224)
T PF04244_consen 49 SAMRHFADELRAKGFRVHYIELDDPENTQSFEDALARALKQHGIDRLHVMEP---------------GDYRLEQRLESLA 113 (224)
T ss_dssp HHHHHHHHHHHHTT--EEEE-TT-TT--SSHHHHHHHHHHHH----EEEE-----------------S-HHHHHHHHH--
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCCccccccHHHHHHHHHHHcCCCEEEEECC---------------CCHHHHHHHHhhh
Confidence 3344677777 888888877544455578888888886665555665554 5787778888877
Q ss_pred cCCCccEEEEEccCCCCChhhhhhhcccCceEEEEeCCccccCCCCCcccCHHHHHHHHHHHhcCceEEE
Q 047961 189 EHHSQLSVALDVLSSLPSANSLGRWLGEPVRAAIIHTDSFLTNARGYPCLSRRHQKLITGFLNHSIQVVI 258 (280)
Q Consensus 189 ~y~~~L~VaL~l~~~lP~~~~~~RWl~EPV~~lii~ts~F~tN~kGyPVLsK~hQ~~i~~~~r~~~~iil 258 (280)
.-..-=-..++=+.=|.+.+....|++ |..- -..+..-+.||.+-.|++
T Consensus 114 ~~~~i~~~~~~~~~Fl~s~~~f~~~~~------------------~~k~---~~Me~FYR~mRkr~~ILm 162 (224)
T PF04244_consen 114 QQLGIPLEVLEDPHFLTSREEFAEWFE------------------GRKR---LRMEYFYREMRKRFGILM 162 (224)
T ss_dssp --SSS-EEEE--TTSSS-HHHHHHHHT------------------T-SS-----HHHHHHHHHHHHTTTE
T ss_pred cccCCceEEeCCCCccCCHHHHHHHHc------------------cCCc---eeHHHHHHHHHHHcCccc
Confidence 432211123444456777788888876 2121 134555556777777777
No 34
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=21.22 E-value=45 Score=31.51 Aligned_cols=44 Identities=27% Similarity=0.558 Sum_probs=26.6
Q ss_pred HHHHHHhcCCC--ccEE-----EEEccCCC-----CChhhhhhhcccCceEEEEeCCc
Q 047961 182 NSFRLLCEHHS--QLSV-----ALDVLSSL-----PSANSLGRWLGEPVRAAIIHTDS 227 (280)
Q Consensus 182 n~iR~lc~y~~--~L~V-----aL~l~~~l-----P~~~~~~RWl~EPV~~lii~ts~ 227 (280)
...|++|.|-. +|.| .|.+++.- |-..+++||| |-.+++++-++
T Consensus 43 ~KYtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwl--P~~ailvDnDi 98 (299)
T PF06460_consen 43 AKYTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWL--PEDAILVDNDI 98 (299)
T ss_dssp HHHHHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS---TT-EEEEEES
T ss_pred HHHHHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhC--CCCcEEEecch
Confidence 46789999933 5555 67888632 3457999999 66788877665
Done!