BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047964
(168 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 58.5 bits (140), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/49 (53%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Query: 79 DCAVCLSDFEDGEMVRKL-NCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126
+CAVCL++ EDGE R L C H FH +C+D WL + +TCPLCR V+
Sbjct: 7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH-STCPLCRLTVV 54
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 75 SESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLP 127
SE C VC+ DFE +++R L C H FH C+DKWL+ TCP+CR P
Sbjct: 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-RTCPICRADSGP 72
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 80 CAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKV---LPDE 129
C +CLS E+GE VR+L C H FH+ C+D+WL CP+CR + LP E
Sbjct: 17 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-KKCPICRVDIEAQLPSE 68
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 80 CAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126
CAVCL DF+ + + CKH FHR CL KWL E CPLC VL
Sbjct: 18 CAVCLEDFKPRDELGICPCKHAFHRKCLIKWL-EVRKVCPLCNMPVL 63
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 79 DCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCR 122
+C VC D+ GE VR+L C H FH C+ WL+++ +CP+CR
Sbjct: 17 ECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH-DSCPVCR 59
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 80 CAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLP 127
C +C S++ G++ +L C H FH+ C+ WLQ+ TCP+CR P
Sbjct: 43 CPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS-GTCPVCRCMFPP 89
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 36.6 bits (83), Expect = 0.007, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 75 SESKDCAVCLSDFEDGEMVRK-LNCKHTFHRDCLDKWLQEYLATCPLC 121
S S C +CL D +V L C H HR C ++ L+E CPLC
Sbjct: 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGY-RCPLC 49
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 74 PSESKDCAVCLSDF----EDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKV 125
PS + C +C+ + ++G ++ C H F CL L+ TCP CR K+
Sbjct: 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKI 61
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 77 SKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKV 125
++ C +CL D + M L C H F C+ +W+++ TCPLC+ V
Sbjct: 5 AERCPICLEDPSNYSM--ALPCLHAFCYVCITRWIRQN-PTCPLCKVPV 50
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 75 SESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKV 125
++ ++C +C+ DG L C H+F + C+DKW + CP+CR ++
Sbjct: 13 TDEEECCICM----DGRADLILPCAHSFCQKCIDKWSDRHR-NCPICRLQM 58
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 74 PSESKDCAVCLSDF----EDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKV 125
PS + C +C+ + ++G ++ C H F CL L+ TCP CR K+
Sbjct: 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKI 66
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 33.9 bits (76), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 76 ESKDCAVCLSDFEDGEMVRKL-NCKHTFHRDCLDKWLQEYL--ATCPLC 121
E +C +C+ F + ++ KL +C HT R CL+K L + CP C
Sbjct: 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFC 62
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 33.5 bits (75), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 78 KDCAVCLSDFEDGEMVRK-LNCKHTFHRDCLDKWLQEYLATCPLC 121
++C +CL D +V L C H HR C ++ L+E CPLC
Sbjct: 6 QNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGY-RCPLC 49
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 32.7 bits (73), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 96 LNCKHTFHRDCLDKWLQEYLATCPLCRTKV 125
LNC H+F C+++W++ + CP+CR +
Sbjct: 69 LNCAHSFCSYCINEWMKRKIE-CPICRKDI 97
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 32.7 bits (73), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 96 LNCKHTFHRDCLDKWLQEYLATCPLCRTKV 125
LNC H+F C+++W++ + CP+CR +
Sbjct: 69 LNCAHSFCSYCINEWMKRKI-ECPICRKDI 97
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 80 CAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKV 125
C +C F + LNC H+F C+++W++ + CP+CR +
Sbjct: 67 CIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKI-ECPICRKDI 108
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 75 SESKDCAVCLSDF----EDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKV 125
S + C +C+ + ++G ++ C H F CL L+ TCP CR K+
Sbjct: 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKI 58
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 75 SESKDCAVCLSDF----EDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKV 125
S + C +C+ + ++G ++ C H F CL L+ TCP CR K+
Sbjct: 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKI 123
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 79 DCAVCLSDF----EDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKV 125
C +C+ + ++G ++ C H F CL L+ TCP CR K+
Sbjct: 5 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKI 54
>pdb|3FL2|A Chain A, Crystal Structure Of The Ring Domain Of The E3 Ubiquitin-
Protein Ligase Uhrf1
Length = 124
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 98 CKHTFHRDCLDKWLQEYLATCPLCR 122
C+H +DCLD+ + + +CP CR
Sbjct: 70 CQHNVCKDCLDRSFRAQVFSCPACR 94
>pdb|3LRQ|A Chain A, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|B Chain B, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|C Chain C, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|D Chain D, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d
Length = 100
Score = 29.6 bits (65), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 72 KSPSESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDEIV 131
+S +E C +C D + +C C+ +WL E A CP CR + E+V
Sbjct: 17 ESIAEVFRCFICXEKLRDARLCP--HCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELV 74
Query: 132 AKYQHQQNLQNLD 144
++ Q LD
Sbjct: 75 NCRWAEEVTQQLD 87
>pdb|1RMD|A Chain A, Rag1 Dimerization Domain
Length = 116
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 97 NCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDEIVAKYQHQQNLQN 142
+CKH F R C+ + L+ + CP CR P ++ + + N+ N
Sbjct: 40 SCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILN 85
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 80 CAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126
C +CL D M K C H F DC+ L+ CP CR K++
Sbjct: 57 CPICL-DMLKNTMTTK-ECLHRFCADCIITALRSGNKECPTCRKKLV 101
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 33 SFTRTVRKIRSRLITRTQYLNFIE-EKNPTISYKKSMLMKKSPSESKD---CAVCLSDFE 88
S ++ V+ ++ +++T L+ E ++ P + + + SP C +CL D
Sbjct: 5 SMSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICL-DML 63
Query: 89 DGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126
M K C H F DC+ L+ CP CR K++
Sbjct: 64 KNTMTTK-ECLHRFCADCIITALRSGNKECPTCRKKLV 100
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 80 CAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDEIVA 132
C +C + +D V+ C H CL W + CP CR ++ E +
Sbjct: 337 CKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 386
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 80 CAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDEIVA 132
C +C + +D V+ C H CL W + CP CR ++ E +
Sbjct: 337 CKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 386
>pdb|3UYJ|A Chain A, Crystal Structure Of Jmjd5 Catalytic Core Domain In
Complex With Nickle And Alpha-Kg
pdb|3UYJ|B Chain B, Crystal Structure Of Jmjd5 Catalytic Core Domain In
Complex With Nickle And Alpha-Kg
Length = 248
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 103 HRDCLDKWLQEYLATCPLCRTKVLPDEIVAKYQHQQNLQNL 143
H C+ KW EY+ CRT +P E+ ++Y ++ Q L
Sbjct: 46 HWPCMQKWSLEYIQEIAGCRT--VPVEVGSRYTDEEWSQTL 84
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 80 CAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDEIVA 132
C +C + +D V+ C H CL W + CP CR ++ E +
Sbjct: 335 CKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 384
>pdb|4GJZ|A Chain A, Jmjd5 In Complex With 2-Oxoglutarate
Length = 235
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 103 HRDCLDKWLQEYLATCPLCRTKVLPDEIVAKYQHQQNLQNL 143
H C+ KW EY+ CRT +P E+ ++Y ++ Q L
Sbjct: 33 HWPCMQKWSLEYIQEIAGCRT--VPVEVGSRYTDEEWSQTL 71
>pdb|4AAP|A Chain A, Crystal Structure Of Jmjd5 Domain Of Human Lysine-Specific
Demethylase 8 (Kdm8) In Complex With N-Oxalylglycine
(Nog)
pdb|4AAP|B Chain B, Crystal Structure Of Jmjd5 Domain Of Human Lysine-Specific
Demethylase 8 (Kdm8) In Complex With N-Oxalylglycine
(Nog)
Length = 239
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 103 HRDCLDKWLQEYLATCPLCRTKVLPDEIVAKYQHQQNLQNL 143
H C+ KW EY+ CRT +P E+ ++Y ++ Q L
Sbjct: 37 HWPCMQKWSLEYIQEIAGCRT--VPVEVGSRYTDEEWSQTL 75
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 80 CAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDEIVA 132
C +C + +D V+ C H CL W + CP CR ++ E +
Sbjct: 335 CKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 384
>pdb|3HAM|A Chain A, Structure Of The Gentamicin-Aph(2")-Iia Complex
pdb|3HAM|B Chain B, Structure Of The Gentamicin-Aph(2")-Iia Complex
pdb|3HAV|A Chain A, Structure Of The Streptomycin-Atp-Aph(2")-Iia Ternary
Complex
pdb|3HAV|B Chain B, Structure Of The Streptomycin-Atp-Aph(2")-Iia Ternary
Complex
pdb|3HAV|C Chain C, Structure Of The Streptomycin-Atp-Aph(2")-Iia Ternary
Complex
Length = 299
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 15/95 (15%)
Query: 38 VRKIRSRLITRTQYLNFIEEKNPTISYKKSMLMKKSPSESKDCAVCLSDFEDGEMVRKLN 97
++ I+ IT QY E++ ++Y ++ +K+ S DC+V L F D + +K
Sbjct: 85 MKYIKGERITYEQYHKLSEKEKDALAYDEATFLKELHSIEIDCSVSL--FSDALVNKK-- 140
Query: 98 CKHTFHRDCLDKWLQE-YLATCPLCRTKVLPDEIV 131
DK+LQ+ L L + ++L DE++
Sbjct: 141 ----------DKFLQDKKLLISILEKEQLLTDEML 165
>pdb|2EA5|A Chain A, Solution Structure Of The Ring Domain Of The Human Cell
Growth Regulator With Ring Finger Domain 1 Protein
Length = 68
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 74 PSE--SKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKV 125
PSE SKDC VC + + + L C+HT CL +Y CP+CR V
Sbjct: 10 PSEENSKDCVVCQNGTVNWVL---LPCRHT----CLCDGCVKYFQQCPMCRQFV 56
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 80 CAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDEIV 131
C +C + +D V+ C H CL W + CP CR ++ E +
Sbjct: 341 CKICAENDKD---VKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEIKGTEPI 389
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 80 CAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126
C +CL D M K C H F DC+ L+ CP CR K++
Sbjct: 37 CPICL-DMLKNTMTTK-ECLHRFCADCIITALRSGNKECPTCRKKLV 81
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 80 CAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKV 125
C +C + +D V+ C H CL W + CP CR ++
Sbjct: 30 CKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 72
>pdb|3UZR|A Chain A, Crystal Structure Of Aminoglycoside Phosphotransferase
Aph(2'')-Ib, Apo Form
pdb|4DCA|A Chain A, Crystal Structure Of Aminoglycoside Phosphotransferase
Aph(2'')-Ib, Adp-Bound
Length = 320
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 15/90 (16%)
Query: 41 IRSRLITRTQYLNFIEEKNPTISYKKSMLMKKSPSESKDCAVCLSDFEDGEMVRKLNCKH 100
I+ IT QY E++ ++Y ++ +K+ S DC+V L F D + +K
Sbjct: 109 IKGERITYEQYHKLSEKEKDALAYDEATFLKELHSIEIDCSVSL--FSDALVNKK----- 161
Query: 101 TFHRDCLDKWLQE-YLATCPLCRTKVLPDE 129
DK+LQ+ L L + ++L DE
Sbjct: 162 -------DKFLQDKKLLISILEKEQLLTDE 184
>pdb|1Z6U|A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
pdb|1Z6U|B Chain B, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
Length = 150
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 98 CKHTFHRDCLDKWLQEYLATCPLCRTKVLPDEIVAKYQHQQNLQNLDYYG 147
C H +DCL + + + +CP CR + + I+ + Q L +L + G
Sbjct: 96 CFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFPG 145
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 80 CAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKV 125
C +C + +D V+ C H CL W + CP CR ++
Sbjct: 27 CKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 69
>pdb|4GJY|A Chain A, Jmjd5 In Complex With N-Oxalylglycine
Length = 235
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 103 HRDCLDKWLQEYLATCPLCRTKVLPDEIVAKYQHQQNLQNL 143
H C KW EY+ CRT +P E+ ++Y ++ Q L
Sbjct: 33 HWPCXQKWSLEYIQEIAGCRT--VPVEVGSRYTDEEWSQTL 71
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 80 CAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKV 125
C +C + +D V+ C H CL W + CP CR ++
Sbjct: 29 CKICAENDKD---VKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI 71
>pdb|1E4U|A Chain A, N-Terminal Ring Finger Domain Of Human Not-4
Length = 78
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 70 MKKSPSESKD---CAVCLSDFE-DGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKV 125
M +SP +D C +C+ E D C + R C + + CP CR
Sbjct: 1 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 60
Query: 126 LPDEIVAKYQHQQNLQNL 143
D V K Q+ LQ +
Sbjct: 61 PEDPAVYKPLSQEELQRI 78
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 76 ESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLD-----KWLQEYLATCPLCRTKVLPDEI 130
E C +CL L+C H+F + CL L + ++CP+CR P+ I
Sbjct: 18 EEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENI 74
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 67 SMLMKKS--PSESK-DCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRT 123
SM + K PS S+ C +C+ + L C HT + C +++ CP CR
Sbjct: 2 SMALPKDAIPSLSECQCGICMEILVEPVT---LPCNHTLCKPCFQSTVEKASLCCPFCRR 58
Query: 124 KV 125
+V
Sbjct: 59 RV 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,173,366
Number of Sequences: 62578
Number of extensions: 155871
Number of successful extensions: 393
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 357
Number of HSP's gapped (non-prelim): 64
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)