BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047964
(168 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZT50|RHA2A_ARATH E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A
PE=1 SV=1
Length = 155
Score = 76.3 bits (186), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 42/58 (72%)
Query: 78 KDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDEIVAKYQ 135
DC VCLS ++GE VRKL C+H FH+ CL+ WL ++ TCPLCR+ ++ D+ V+K Q
Sbjct: 84 SDCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDDCVSKTQ 141
>sp|Q9ZU51|RHA2B_ARATH Probable E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana
GN=RHA2B PE=1 SV=2
Length = 147
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 60/106 (56%), Gaps = 8/106 (7%)
Query: 27 ILILTRSFTRTVRKI-----RSRLITRTQYLNFIEEKNPTISYKKSMLMKKSPSESKDCA 81
+L L +F R VR + + ++ T L+ + ++ ++ + + S + + DC
Sbjct: 19 LLALLATFFRHVRSLLLFPSSAPVVVVTSNLSVLADQ---LNLNRLFSYRYSDNAASDCI 75
Query: 82 VCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLP 127
VCLS + GE VRKL+C+H FH+ CL+ WLQ CPLCR+ +LP
Sbjct: 76 VCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLLP 121
>sp|Q9LSW9|ATL16_ARATH RING-H2 finger protein ATL16 OS=Arabidopsis thaliana GN=ATL16 PE=2
SV=1
Length = 375
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 8/71 (11%)
Query: 77 SKDCAVCLSDFEDGEMVRKL-NCKHTFHRDCLDKWLQEYLATCPLCRTKV------LPDE 129
S++C+VCLS+F+D E +R + NC H FH DC+D WLQ A CPLCRT+V PD
Sbjct: 135 SQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNN-ANCPLCRTRVSCDTSFPPDR 193
Query: 130 IVAKYQHQQNL 140
+ A +NL
Sbjct: 194 VSAPSTSPENL 204
>sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana
GN=At3g19950 PE=2 SV=1
Length = 328
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 5/70 (7%)
Query: 60 PTISYKKSMLMKKSPSESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCP 119
PT+ K ML SE CAVC+ +FEDG V+++ CKH FH+DCL WL E +CP
Sbjct: 200 PTVKVTKDMLK----SEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWL-ELHNSCP 254
Query: 120 LCRTKVLPDE 129
+CR ++ D+
Sbjct: 255 VCRFELPTDD 264
>sp|Q94BY6|ATL75_ARATH RING-H2 finger protein ATL75 OS=Arabidopsis thaliana GN=ATL75 PE=2
SV=1
Length = 226
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 5/64 (7%)
Query: 60 PTISYKKSMLMKKSPSESKDCAVCLSDFEDGEMVRKL-NCKHTFHRDCLDKWLQEYLATC 118
P +SY M + P ++C +CLSDF GE +R L C H FH C+DKWLQ++L TC
Sbjct: 119 PVVSYSPEMNL---PGLGEECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHL-TC 174
Query: 119 PLCR 122
P CR
Sbjct: 175 PKCR 178
>sp|Q9SJJ7|ATL57_ARATH RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2
SV=1
Length = 237
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 40/57 (70%), Gaps = 2/57 (3%)
Query: 71 KKSPSESKDCAVCLSDFEDGEMVRKL-NCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126
K + ++DC +CLSDFE+GE V+ + +C H FH DC+D WL Y+ TCPLCR+ L
Sbjct: 131 KAAKQRNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYV-TCPLCRSNQL 186
>sp|P87139|YDM9_SCHPO Uncharacterized RING finger protein C57A7.09 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC57A7.09 PE=1 SV=1
Length = 372
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 56/102 (54%), Gaps = 5/102 (4%)
Query: 31 TRSFTRT-VRKIRSRLITRTQYLNFIEE-KNPTISYKKSMLMKKSPSESK---DCAVCLS 85
T+S TR + + SR I+R + + EE +N T + + LM +S + +C +CL
Sbjct: 267 TKSKTRRFIEDLPSRTISREGFYSEEEEIENSTQNGELVPLMDESTRRATFGVECVICLE 326
Query: 86 DFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLP 127
F G+ V L CKH FHR C+ KW+ +Y CP C T+V P
Sbjct: 327 SFTKGDKVVALPCKHEFHRPCIAKWIVDYRHACPTCNTEVPP 368
>sp|Q67YI6|ATL65_ARATH RING-H2 finger protein ATL65 OS=Arabidopsis thaliana GN=ATL65 PE=2
SV=2
Length = 411
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Query: 66 KSMLMKKSPSESKDCAVCLSDFEDGEMVRKLN-CKHTFHRDCLDKWLQEYLATCPLCRTK 124
K + K S + +DCAVCL +FE+G+ VR L C H FH +C+D+WL+ + CPLCRT
Sbjct: 142 KPAVGKTSAANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSH-PNCPLCRTA 200
Query: 125 VL 126
+L
Sbjct: 201 IL 202
>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2
SV=1
Length = 347
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 13/113 (11%)
Query: 16 FIIFFTLLFVEILILTRSFTRTVRKIRSRLITRTQYLNFIEEK---NPTISYKKSMLMKK 72
++I FT + V +L+L VR I+ R R Q +E+ PT Y+K
Sbjct: 173 YLIPFTGI-VGLLVLAMGTVLIVRCIQHR--KRLQRNRLTKEQLKQIPTHDYQKG----- 224
Query: 73 SPSESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKV 125
E CA+CL ++EDG+ +R L C H +H C+D WL + TCP+C+ V
Sbjct: 225 --DEYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPV 275
>sp|P0C034|ATL10_ARATH RING-H2 finger protein ATL10 OS=Arabidopsis thaliana GN=ATL10 PE=2
SV=1
Length = 251
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 5/65 (7%)
Query: 60 PTISYKKSMLMKKSPSESKDCAVCLSDFEDGEMVRKL-NCKHTFHRDCLDKWLQEYLATC 118
P +SY M + P ++C +CLSDF GE +R L C H FH C+DKWLQ++L TC
Sbjct: 118 PVVSYSPEMNL---PGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHL-TC 173
Query: 119 PLCRT 123
P CR
Sbjct: 174 PKCRN 178
>sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167
PE=2 SV=1
Length = 349
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 13/113 (11%)
Query: 16 FIIFFTLLFVEILILTRSFTRTVRKIRSRLITRTQYLNFIEEK---NPTISYKKSMLMKK 72
++I FT + V +L+L VR I+ R R Q +E+ PT Y+K
Sbjct: 173 YLIPFTGI-VGLLVLAMGTVLIVRCIQHR--KRLQRNRLTKEQLKQIPTHDYQKG----- 224
Query: 73 SPSESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKV 125
E CA+CL ++EDG+ +R L C H +H C+D WL + TCP+C+ V
Sbjct: 225 --DEYDVCAICLDEYEDGDKLRILPCAHAYHSRCVDPWLTQTRKTCPICKQPV 275
>sp|Q6NML0|ATL76_ARATH E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana GN=ATL76
PE=1 SV=1
Length = 225
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 5/64 (7%)
Query: 60 PTISYKKSMLMKKSPSESKDCAVCLSDFEDGEMVRKL-NCKHTFHRDCLDKWLQEYLATC 118
P +SY + M + P ++C +CLSDF GE +R L C H FH C+DKWLQ +L TC
Sbjct: 118 PVVSYSREMNL---PGIGEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHHL-TC 173
Query: 119 PLCR 122
P CR
Sbjct: 174 PKCR 177
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%)
Query: 80 CAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDE 129
CA+CL ++EDG+ +R L C H +H C+D WL + TCP+C+ KV+P +
Sbjct: 240 CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQ 289
>sp|Q5SSZ7|ZNRF3_MOUSE E3 ubiquitin-protein ligase ZNRF3 OS=Mus musculus GN=Znrf3 PE=2
SV=1
Length = 913
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 8/119 (6%)
Query: 15 IFIIFFT-------LLFVEILILTRSFTRTVRKIRSRLITRTQYLNFIEEKNPTISYKKS 67
IF+ FF +L V+I + R ++ ++ + + + + F +
Sbjct: 218 IFLAFFVVVSLVCLILLVKIKLKQRRSQNSMNRLAVQALEKMETRKFNSKSKGRREGSCG 277
Query: 68 MLMKKSPSESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126
L S + DCA+CL + DGE +R + C H FHR C+D WL ++ TCP CR ++
Sbjct: 278 ALDTLSSGSTSDCAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQH-HTCPHCRHNII 335
>sp|P93823|ATL1_ARATH RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2
SV=1
Length = 381
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 22/126 (17%)
Query: 60 PTISYKKSMLMKKSPSESKD---CAVCLSDFEDGEMVRKL-NCKHTFHRDCLDKWLQEYL 115
P +KK ++ +SK+ C+VCL++F++ E +R + NC H FH DC+D WLQ
Sbjct: 111 PVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGN- 169
Query: 116 ATCPLCRTKV------------LPDEIVAKYQHQQNLQNLD---YYGGDDEMAFLISLLH 160
A CPLCRT V P H +N +NL+ GGDD+ +I L
Sbjct: 170 ANCPLCRTSVSCEASFTLDLISAPSSPRENSPHSRN-RNLEPGLVLGGDDDFV-VIELGA 227
Query: 161 GSGVHR 166
+G +R
Sbjct: 228 SNGNNR 233
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%)
Query: 80 CAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDE 129
CA+CL ++EDG+ +R L C H +H C+D WL + TCP+C+ KV+P +
Sbjct: 240 CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQ 289
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%)
Query: 80 CAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDE 129
CA+CL ++EDG+ +R L C H +H C+D WL + TCP+C+ KV+P +
Sbjct: 240 CAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQ 289
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%)
Query: 80 CAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDE 129
CA+CL ++EDG+ +R L C H +H C+D WL + TCP+C+ KV+P +
Sbjct: 240 CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQ 289
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%)
Query: 80 CAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDE 129
CA+CL ++EDG+ +R L C H +H C+D WL + TCP+C+ KV+P +
Sbjct: 240 CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQ 289
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%)
Query: 80 CAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDE 129
CA+CL ++EDG+ +R L C H +H C+D WL + TCP+C+ KV+P +
Sbjct: 240 CAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQ 289
>sp|Q8L9T5|ATL2_ARATH RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2
SV=2
Length = 304
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 79 DCAVCLSDFEDGEMVRKL-NCKHTFHRDCLDKWLQEYLATCPLCRTKV 125
+CAVCLS+FE+ E R L NC+HTFH DC+D W + +TCPLCR+ V
Sbjct: 118 ECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSH-STCPLCRSLV 164
>sp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana
GN=ATL12 PE=3 SV=1
Length = 390
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 71/130 (54%), Gaps = 20/130 (15%)
Query: 12 ICTIFIIFFTLLFVEILILTRSFTRTVR--------KIR-----SRLITRTQYLNFIEEK 58
I +F I FTL FV +L+ + F +R +IR L R+ + +++K
Sbjct: 44 ITGVFSIVFTLTFV-LLVYAKCFHNDLRSETDSDGERIRHDRLWQGLFNRSSRFSGLDKK 102
Query: 59 --NPTISYKKSMLMKKSPSESKDCAVCLSDFEDGEMVRKL-NCKHTFHRDCLDKWLQEYL 115
++ S L K + +C+VCLS FED E++R L C+H FH C+D+WL+++
Sbjct: 103 AIESLPFFRFSAL--KGLKQGLECSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQH- 159
Query: 116 ATCPLCRTKV 125
ATCPLCR +V
Sbjct: 160 ATCPLCRNRV 169
>sp|Q5XF85|ATL42_ARATH E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42
PE=1 SV=2
Length = 432
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 72 KSPSESKDCAVCLSDFEDGEMVRKL-NCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDE 129
K + DC+VCLS FE E++R L C+H FH C+D+WL+++ ATCPLCR +V +E
Sbjct: 115 KGSKQGLDCSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLEQH-ATCPLCRDRVSMEE 172
>sp|Q9H6Y7|RN167_HUMAN E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1
SV=1
Length = 350
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 13/113 (11%)
Query: 16 FIIFFTLLFVEILILTRSFTRTVRKIRSRLITRTQYLNFIEEK---NPTISYKKSMLMKK 72
++I FT + V +L+L R I+ R R Q +E+ PT Y+K
Sbjct: 173 YLIPFTGI-VGLLVLAMGAVMIARCIQHR--KRLQRNRLTKEQLKQIPTHDYQKG----- 224
Query: 73 SPSESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKV 125
+ CA+CL ++EDG+ +R L C H +H C+D WL + TCP+C+ V
Sbjct: 225 --DQYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPV 275
>sp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2
SV=3
Length = 323
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 62/129 (48%), Gaps = 24/129 (18%)
Query: 14 TIFIIFFTLLFVEILIL--------------TRSFTRTVRKIRSRLITRTQYLNFIEEKN 59
T+F + TL F+ L+ TR F SR R N + E
Sbjct: 48 TVFAVLVTLFFLTGLLSVYIRHCARSNPDSSTRYFRNRANDGSSR---RGGLDNAVVESF 104
Query: 60 PTISYKKSMLMKKSPSESKD--CAVCLSDFEDGEMVRKLN-CKHTFHRDCLDKWLQEYLA 116
P +Y +K+S SKD CA+CL++ ED E VR L C H FH DC+D WL + A
Sbjct: 105 PVFAYSS---VKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSH-A 160
Query: 117 TCPLCRTKV 125
TCP+CR+ +
Sbjct: 161 TCPVCRSNL 169
>sp|Q9SN28|ATL7_ARATH RING-H2 finger protein ATL7 OS=Arabidopsis thaliana GN=ATL7 PE=2
SV=1
Length = 236
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 23/134 (17%)
Query: 8 FFSQICTIFIIFFTLLFVEILILTRSFTRTVR------------KIRSRLITRTQYLN-F 54
F IC FI+ F L ++ L R+ T V + L T L+
Sbjct: 34 FSVPICFTFIVLFVLY---VIYLRRNSTTNVDWSSLGMRGGTFVPTNNNLSTAELGLSKD 90
Query: 55 IEEKNPTISYKKSMLMKKSPSESKDCAVCLSDFEDGEMVRKL-NCKHTFHRDCLDKWLQE 113
I E P + YK+S ++K S C+VCL D++ E ++++ +C HTFH +C+D WL
Sbjct: 91 IREMLPVVIYKESFIVKDS-----QCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTS 145
Query: 114 YLATCPLCRTKVLP 127
+ TCPLCR ++P
Sbjct: 146 H-TTCPLCRLSLIP 158
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 63.2 bits (152), Expect = 8e-10, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 78 KDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126
K C+VC++++ +G +RKL C H +H C+D+WL E +TCP+CR VL
Sbjct: 583 KTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSEN-STCPICRRAVL 630
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 63.2 bits (152), Expect = 8e-10, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 78 KDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126
K C+VC++++ +G +RKL C H +H C+D+WL E +TCP+CR VL
Sbjct: 544 KTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSEN-STCPICRRAVL 591
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 63.2 bits (152), Expect = 8e-10, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 78 KDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126
K C+VC++++ +G +RKL C H +H C+D+WL E +TCP+CR VL
Sbjct: 568 KTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSEN-STCPICRRAVL 615
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 78 KDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126
K C+VC++++ +G +RKL C H +H C+D+WL E +TCP+CR VL
Sbjct: 701 KTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSEN-STCPICRRAVL 748
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 78 KDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126
K C+VC++++ +G +RKL C H +H C+D+WL E +TCP+CR VL
Sbjct: 566 KTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSEN-STCPICRRAVL 613
>sp|Q9P7E1|YOF7_SCHPO Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBP4H10.07 PE=1 SV=1
Length = 583
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/46 (54%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 80 CAVCLSDFEDGEMVRKL-NCKHTFHRDCLDKWLQEYLATCPLCRTK 124
C VCLS+FE + R+L C H FHR+C+D+WL +CPLCRTK
Sbjct: 525 CLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSSQNSCPLCRTK 570
>sp|Q5EAE9|ATL43_ARATH RING-H2 finger protein ATL43 OS=Arabidopsis thaliana GN=ATL43 PE=2
SV=2
Length = 407
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 79 DCAVCLSDFEDGEMVRKL-NCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDEIV 131
+CAVCL+ FE E++R L CKH FH +C+D WL + +TCPLCR +V P++I+
Sbjct: 145 ECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAH-STCPLCRYRVDPEDIL 197
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 78 KDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDEI 130
K C+VC+SD+ G +R+L C H FH C+D+WL E TCP+CR VL I
Sbjct: 630 KICSVCISDYVTGNKLRQLPCMHEFHIHCIDRWLSEN-CTCPICRQPVLGSNI 681
>sp|Q8VEM1|GOLI_MOUSE E3 ubiquitin-protein ligase RNF130 OS=Mus musculus GN=Rnf130 PE=2
SV=1
Length = 419
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 13/119 (10%)
Query: 17 IIFFTLLFVEILILTRS-----FTRTVRKIRSRLITRTQYLNFIEEKNPTISYKKSMLMK 71
++F ++ F+ ++I++ + F + +R +R R Q + IS + +K
Sbjct: 195 LVFVSISFIVLMIISSAWLIFYFIQKIRYTNAR--DRNQR-RLGDAAKKAISKLTTRTVK 251
Query: 72 KSPSESKD----CAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126
K E+ CAVC+ ++ ++VR L CKH FH+ C+D WL E+ TCP+C+ +L
Sbjct: 252 KGDKETDPDFDHCAVCIESYKQNDVVRVLPCKHVFHKSCVDPWLSEH-CTCPMCKLNIL 309
>sp|Q6Y290|GOLI_RAT E3 ubiquitin-protein ligase RNF130 OS=Rattus norvegicus GN=Rnf130
PE=1 SV=1
Length = 419
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 13/119 (10%)
Query: 17 IIFFTLLFVEILILTRS-----FTRTVRKIRSRLITRTQYLNFIEEKNPTISYKKSMLMK 71
++F ++ F+ ++I++ + F + +R +R R Q + IS + +K
Sbjct: 195 LVFVSISFIVLMIISSAWLIFYFIQKIRYTNAR--DRNQR-RLGDAAKKAISKLTTRTVK 251
Query: 72 KSPSESKD----CAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126
K E+ CAVC+ ++ ++VR L CKH FH+ C+D WL E+ TCP+C+ +L
Sbjct: 252 KGDKETDPDFDHCAVCIESYKQNDVVRVLPCKHVFHKSCVDPWLSEH-CTCPMCKLNIL 309
>sp|Q86XS8|GOLI_HUMAN E3 ubiquitin-protein ligase RNF130 OS=Homo sapiens GN=RNF130 PE=1
SV=1
Length = 419
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 13/119 (10%)
Query: 17 IIFFTLLFVEILILTRS-----FTRTVRKIRSRLITRTQYLNFIEEKNPTISYKKSMLMK 71
++F ++ F+ ++I++ + F + +R +R R Q + IS + +K
Sbjct: 195 LVFVSISFIVLMIISSAWLIFYFIQKIRYTNAR--DRNQR-RLGDAAKKAISKLTTRTVK 251
Query: 72 KSPSESKD----CAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126
K E+ CAVC+ ++ ++VR L CKH FH+ C+D WL E+ TCP+C+ +L
Sbjct: 252 KGDKETDPDFDHCAVCIESYKQNDVVRILPCKHVFHKSCVDPWLSEH-CTCPMCKLNIL 309
>sp|Q9SRQ8|ATL51_ARATH RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2
SV=2
Length = 356
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 76 ESKDCAVCLSDFEDGEMVRKL-NCKHTFHRDCLDKWLQEYLATCPLCRTKVLPD---EIV 131
ES DC+VCLS+F++ E +R L C H FH C+D WL+ + + CPLCR ++ EIV
Sbjct: 155 ESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSH-SNCPLCRAFIVTSSAVEIV 213
Query: 132 AKYQHQQNLQNLDYYGGDDEMAFL 155
Q +N GDD + +
Sbjct: 214 DLTNQQIVTENNSISTGDDSVVVV 237
>sp|P0C035|ATL60_ARATH RING-H2 finger protein ATL60 OS=Arabidopsis thaliana GN=ATL60 PE=2
SV=1
Length = 310
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 79 DCAVCLSDFEDGEMVRKL-NCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDEIVAKYQHQ 137
+CAVCLSD DG+ R L C H FH DC+D W Q + +TCPLCR V E +
Sbjct: 119 ECAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSH-STCPLCRNTVGSVEDTTHGGSE 177
Query: 138 QNLQNLDYYGG 148
QN ++ G
Sbjct: 178 GLPQNQNFESG 188
>sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1
PE=2 SV=1
Length = 338
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 57/111 (51%), Gaps = 17/111 (15%)
Query: 60 PTISYKKSMLMKKSPSESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCP 119
P ++ KS L SE CAVC+ DFE+G +++ CKH +H+DCL WL E +CP
Sbjct: 208 PLVNITKSNLN----SEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWL-ELHNSCP 262
Query: 120 LCRTKVLPDEI-----VAKYQHQQNLQNLDYYG----GDD---EMAFLISL 158
+CR ++ D+ V Q + D G GD+ E +F ISL
Sbjct: 263 VCRHELPTDDPDYERRVRGAQGTSGGNDGDNSGQRSDGDNRTVERSFRISL 313
>sp|Q68DV7|RNF43_HUMAN E3 ubiquitin-protein ligase RNF43 OS=Homo sapiens GN=RNF43 PE=1
SV=1
Length = 783
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 73 SPSESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLC 121
S S + CA+CL +F +G+ +R ++C H FHR+C+D WL ++ TCPLC
Sbjct: 265 SCSSAPVCAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQH-RTCPLC 312
>sp|Q9FKX5|NIPL1_ARATH NEP1-interacting protein-like 1 OS=Arabidopsis thaliana GN=ATL27
PE=2 SV=1
Length = 221
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 65 KKSMLMKKSPSESKDCAVCLSDFEDGEMVRKL-NCKHTFHRDCLDKWLQEYLATCPLCR 122
K + SP E C+VCL DF+ GE VR L +C H FH C+DKWL+ + A+CPLCR
Sbjct: 162 PKVRITDTSP-EIVSCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKWLRRH-ASCPLCR 218
>sp|Q8LF65|ATL17_ARATH RING-H2 finger protein ATL17 OS=Arabidopsis thaliana GN=ATL17 PE=2
SV=2
Length = 235
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
Query: 79 DCAVCLSDFEDGEMVRKL-NCKHTFHRDCLDKWLQEYLATCPLCRTKVLP 127
+C+VCLS+F+D E R + NCKHTFH C+D W + ++CPLCR+++ P
Sbjct: 75 ECSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSH-SSCPLCRSQIEP 123
>sp|Q570X5|ATL58_ARATH RING-H2 finger protein ATL58 OS=Arabidopsis thaliana GN=ATL58 PE=2
SV=1
Length = 261
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 18/129 (13%)
Query: 8 FFSQICTIFIIFFTLLFVEILILTRSFTRTVRKIRSRLITRTQYLNFIE--------EKN 59
F IC FII F LF I + S + +R+ I L+ IE E
Sbjct: 28 FSVPICFTFIILF--LFYLIYLRRSSSDLSSLGMRTTFIPGNS-LSTIELGLSKELREML 84
Query: 60 PTISYKKSMLMKKSPSESKDCAVCLSDFEDGEMVRKLN-CKHTFHRDCLDKWLQEYLATC 118
P + +K+S + S C+VCL D++ + ++++ CKHTFH DC+D WL + TC
Sbjct: 85 PIVVFKESFTVMDS-----QCSVCLGDYQPNDKLQQIPVCKHTFHMDCIDLWLTSH-TTC 138
Query: 119 PLCRTKVLP 127
PLCR ++P
Sbjct: 139 PLCRLALIP 147
>sp|Q8GYT9|SIS3_ARATH E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana GN=SIS3
PE=2 SV=2
Length = 358
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 70 MKKSPSESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPD 128
+K P + +C +CL +F G VR L C H FH +C+D+WL+ + CP CR V PD
Sbjct: 225 LKAVPDDCGECLICLEEFHIGHEVRGLPCAHNFHVECIDQWLRLNV-KCPRCRCSVFPD 282
>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1
Length = 667
Score = 60.8 bits (146), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/49 (51%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 78 KDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126
K C+VC+SD+ G +R+L C H FH C+D+WL E TCP+CR VL
Sbjct: 612 KVCSVCISDYVAGNKLRQLPCLHEFHIHCIDRWLSEN-CTCPVCRRPVL 659
>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana
GN=At1g12760 PE=2 SV=1
Length = 408
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 36/52 (69%), Gaps = 3/52 (5%)
Query: 76 ESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYL-ATCPLCRTKVL 126
E +C +CLS +EDG +R+L C H FH C+DKWL Y+ ATCPLC+ +L
Sbjct: 349 EDAECCICLSAYEDGTELRELPCGHHFHCSCVDKWL--YINATCPLCKYNIL 398
>sp|Q84W40|ATL11_ARATH RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2
SV=2
Length = 404
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 7/76 (9%)
Query: 55 IEEKNPTISYK--KSMLMKKSPSESKDCAVCLSDFEDGEMVRKL-NCKHTFHRDCLDKWL 111
I E PT Y K++ + K E+ +C+VCL++FED E +R + C H FH C+D WL
Sbjct: 120 IIETFPTFQYSTVKTLRIGK---EALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWL 176
Query: 112 QEYLATCPLCRTKVLP 127
+ + TCPLCR ++P
Sbjct: 177 RSH-TTCPLCRADLIP 191
>sp|Q8L9W3|ATL23_ARATH E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis thaliana GN=ATL23
PE=1 SV=2
Length = 163
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 11/119 (9%)
Query: 12 ICTIFIIFFTLLFVEILILTRSFTRTVRKIRSRLITRTQYLNFIE-EKNPTISYKKSMLM 70
+C +F+I+ LL+ TR +R + L+ +E EK P ++ ++ ++
Sbjct: 43 MCIVFLIYLFLLWCS----TRRRIERLRFAEPVKPVTGKGLSVLELEKIPKLTGRELAVI 98
Query: 71 KKSPSESKDCAVCLSDFEDGEMVRKL-NCKHTFHRDCLDKWLQEYLATCPLCRTKVLPD 128
+S +CAVCL D E G+ R + C H FH+ C D WL + CP+CR ++ P+
Sbjct: 99 ARS----TECAVCLEDIESGQSTRLVPGCNHGFHQLCADTWLSNH-TVCPVCRAELAPN 152
>sp|Q9M0R5|ATL36_ARATH Putative RING-H2 finger protein ATL36 OS=Arabidopsis thaliana
GN=ATL36 PE=3 SV=1
Length = 345
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 79 DCAVCLSDFEDGEMVRKLN-CKHTFHRDCLDKWLQEYLATCPLCRTKV 125
+CA+CLS+FED E +R + C HTFH +C+D WL + +TCP+CR +
Sbjct: 122 ECAICLSEFEDQETLRWMPPCSHTFHANCIDVWLSSW-STCPVCRANL 168
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.139 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,478,815
Number of Sequences: 539616
Number of extensions: 2240863
Number of successful extensions: 8695
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 437
Number of HSP's that attempted gapping in prelim test: 8145
Number of HSP's gapped (non-prelim): 726
length of query: 168
length of database: 191,569,459
effective HSP length: 109
effective length of query: 59
effective length of database: 132,751,315
effective search space: 7832327585
effective search space used: 7832327585
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (26.6 bits)