Query 047964
Match_columns 168
No_of_seqs 147 out of 2034
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 08:15:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047964.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047964hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x4j_A Ring finger protein 38; 99.5 6.4E-15 2.2E-19 93.2 3.6 52 75-127 21-72 (75)
2 2kiz_A E3 ubiquitin-protein li 99.5 2.5E-14 8.7E-19 88.9 5.7 52 75-127 12-63 (69)
3 2l0b_A E3 ubiquitin-protein li 99.5 1.7E-14 5.8E-19 94.7 4.3 52 75-127 38-89 (91)
4 2ep4_A Ring finger protein 24; 99.5 3.1E-14 1E-18 89.7 5.2 52 75-127 13-64 (74)
5 2ect_A Ring finger protein 126 99.5 1.1E-14 3.9E-19 92.6 2.4 56 74-130 12-67 (78)
6 1iym_A EL5; ring-H2 finger, ub 99.5 2E-14 6.9E-19 85.4 3.0 51 75-126 3-54 (55)
7 3ng2_A RNF4, snurf, ring finge 99.4 4.3E-14 1.5E-18 88.2 2.3 55 75-130 8-66 (71)
8 1t1h_A Gspef-atpub14, armadill 99.4 1.1E-13 3.9E-18 87.9 3.1 66 75-143 6-71 (78)
9 2ecy_A TNF receptor-associated 99.4 3E-13 1E-17 83.3 4.8 52 75-129 13-64 (66)
10 2ecm_A Ring finger and CHY zin 99.4 3.2E-13 1.1E-17 80.0 4.5 51 75-126 3-54 (55)
11 2ea6_A Ring finger protein 4; 99.4 2.8E-13 9.5E-18 83.9 4.1 53 74-127 12-68 (69)
12 2ecl_A Ring-box protein 2; RNF 99.4 2.4E-13 8.3E-18 87.3 3.3 52 76-128 14-77 (81)
13 2xeu_A Ring finger protein 4; 99.4 2.6E-13 9E-18 82.7 3.0 54 76-130 2-59 (64)
14 1v87_A Deltex protein 2; ring- 99.4 7.6E-13 2.6E-17 90.0 5.2 52 76-127 24-94 (114)
15 2djb_A Polycomb group ring fin 99.3 6.7E-13 2.3E-17 83.2 4.4 54 74-130 12-65 (72)
16 3lrq_A E3 ubiquitin-protein li 99.3 2.7E-13 9.4E-18 90.4 2.6 59 76-136 21-79 (100)
17 2csy_A Zinc finger protein 183 99.3 7.3E-13 2.5E-17 84.8 3.8 48 75-126 13-60 (81)
18 2d8t_A Dactylidin, ring finger 99.3 2.8E-13 9.4E-18 84.7 1.6 51 75-129 13-63 (71)
19 2ct2_A Tripartite motif protei 99.3 2E-12 6.8E-17 83.8 5.5 55 74-128 12-69 (88)
20 3fl2_A E3 ubiquitin-protein li 99.3 7E-13 2.4E-17 91.6 3.4 49 76-127 51-99 (124)
21 3dpl_R Ring-box protein 1; ubi 99.3 1.3E-12 4.4E-17 88.0 4.5 50 76-126 36-100 (106)
22 2egp_A Tripartite motif-contai 99.3 1.8E-13 6.1E-18 87.1 0.3 56 74-132 9-70 (79)
23 2y43_A E3 ubiquitin-protein li 99.3 3.3E-13 1.1E-17 89.6 1.4 64 76-142 21-84 (99)
24 3ztg_A E3 ubiquitin-protein li 99.3 1.2E-12 4.3E-17 85.6 4.1 63 75-140 11-76 (92)
25 2ysl_A Tripartite motif-contai 99.3 8.7E-13 3E-17 82.6 3.0 53 74-129 17-71 (73)
26 2yur_A Retinoblastoma-binding 99.3 1.4E-12 5E-17 82.1 3.9 51 74-127 12-64 (74)
27 1chc_A Equine herpes virus-1 r 99.3 1.4E-12 4.8E-17 80.6 3.5 49 75-126 3-51 (68)
28 1g25_A CDK-activating kinase a 99.3 2.1E-12 7E-17 79.3 4.1 54 77-130 3-58 (65)
29 4ayc_A E3 ubiquitin-protein li 99.3 5.9E-13 2E-17 93.7 1.8 48 77-128 53-100 (138)
30 2ecw_A Tripartite motif-contai 99.3 1E-12 3.4E-17 84.5 2.3 53 75-130 17-74 (85)
31 2ckl_A Polycomb group ring fin 99.3 7.3E-13 2.5E-17 89.4 1.3 51 75-128 13-63 (108)
32 2ecv_A Tripartite motif-contai 99.3 1.3E-12 4.3E-17 84.0 1.7 54 74-130 16-74 (85)
33 3hct_A TNF receptor-associated 99.2 3.1E-12 1.1E-16 87.6 3.6 65 73-140 14-78 (118)
34 2ysj_A Tripartite motif-contai 99.2 8.1E-12 2.8E-16 76.1 4.6 45 74-121 17-63 (63)
35 2ecn_A Ring finger protein 141 99.2 7.8E-13 2.7E-17 82.3 -0.4 48 75-127 13-60 (70)
36 1z6u_A NP95-like ring finger p 99.2 4E-12 1.4E-16 90.7 3.0 59 76-137 77-136 (150)
37 2ecj_A Tripartite motif-contai 99.2 1.2E-11 4.2E-16 73.8 4.3 45 74-121 12-58 (58)
38 1jm7_A BRCA1, breast cancer ty 99.2 1.4E-12 4.9E-17 88.2 0.1 54 77-133 21-76 (112)
39 2d8s_A Cellular modulator of i 99.2 1.1E-11 3.6E-16 79.4 3.9 53 75-128 13-71 (80)
40 2ckl_B Ubiquitin ligase protei 99.2 5.8E-12 2E-16 91.1 2.5 50 76-127 53-102 (165)
41 4a0k_B E3 ubiquitin-protein li 99.2 2.5E-12 8.7E-17 87.9 0.2 50 76-126 47-111 (117)
42 1e4u_A Transcriptional repress 99.2 2.1E-11 7.1E-16 77.6 3.8 56 75-130 9-65 (78)
43 3l11_A E3 ubiquitin-protein li 99.2 1.2E-12 4E-17 89.3 -2.3 49 75-126 13-61 (115)
44 2kr4_A Ubiquitin conjugation f 99.1 2.6E-11 8.8E-16 78.4 3.9 62 75-140 12-73 (85)
45 4ap4_A E3 ubiquitin ligase RNF 99.1 1.9E-11 6.5E-16 84.7 3.2 55 75-130 5-63 (133)
46 1rmd_A RAG1; V(D)J recombinati 99.1 2.4E-11 8.3E-16 82.8 2.8 52 76-130 22-73 (116)
47 2kre_A Ubiquitin conjugation f 99.1 3.5E-11 1.2E-15 80.1 3.3 66 75-144 27-92 (100)
48 1wgm_A Ubiquitin conjugation f 99.1 5.7E-11 2E-15 78.8 3.8 65 75-143 20-85 (98)
49 4ap4_A E3 ubiquitin ligase RNF 99.0 2.7E-11 9.1E-16 83.9 0.8 55 75-130 70-128 (133)
50 3hcs_A TNF receptor-associated 99.0 1E-10 3.4E-15 84.9 3.6 61 73-136 14-74 (170)
51 2yu4_A E3 SUMO-protein ligase 99.0 1.7E-10 5.7E-15 75.9 4.3 69 75-146 5-82 (94)
52 2ct0_A Non-SMC element 1 homol 99.0 2E-10 7E-15 72.1 4.1 50 75-126 13-63 (74)
53 1jm7_B BARD1, BRCA1-associated 99.0 3.1E-11 1.1E-15 82.5 0.1 52 76-133 21-73 (117)
54 2c2l_A CHIP, carboxy terminus 99.0 1.3E-10 4.4E-15 90.0 3.6 66 76-144 207-272 (281)
55 2y1n_A E3 ubiquitin-protein li 99.0 1.8E-10 6.3E-15 93.2 3.9 48 77-127 332-379 (389)
56 2vje_A E3 ubiquitin-protein li 99.0 2E-10 6.7E-15 70.3 2.4 49 76-126 7-56 (64)
57 3knv_A TNF receptor-associated 99.0 5.2E-11 1.8E-15 84.1 -0.4 49 75-126 29-77 (141)
58 1bor_A Transcription factor PM 99.0 1.5E-10 5E-15 68.9 1.3 45 75-126 4-48 (56)
59 2vje_B MDM4 protein; proto-onc 98.9 2.4E-10 8.3E-15 69.7 2.1 50 75-126 5-55 (63)
60 2f42_A STIP1 homology and U-bo 98.9 7.6E-10 2.6E-14 80.9 4.7 66 75-143 104-169 (179)
61 4ic3_A E3 ubiquitin-protein li 98.9 3.4E-10 1.2E-14 71.2 0.9 43 76-126 23-66 (74)
62 1wim_A KIAA0161 protein; ring 98.8 4.2E-09 1.4E-13 69.0 3.1 56 76-131 4-70 (94)
63 2ecg_A Baculoviral IAP repeat- 98.7 3.7E-09 1.3E-13 66.5 2.3 44 76-127 24-68 (75)
64 3k1l_B Fancl; UBC, ring, RWD, 98.7 5.2E-09 1.8E-13 83.0 3.6 52 75-126 306-372 (381)
65 2ea5_A Cell growth regulator w 98.7 9.2E-09 3.1E-13 63.5 2.6 45 75-127 13-58 (68)
66 3htk_C E3 SUMO-protein ligase 98.6 8.3E-09 2.8E-13 79.2 1.7 61 76-138 180-243 (267)
67 2yho_A E3 ubiquitin-protein li 98.6 7.7E-09 2.6E-13 65.8 0.7 44 76-127 17-61 (79)
68 1vyx_A ORF K3, K3RING; zinc-bi 98.6 7.3E-08 2.5E-12 58.0 4.9 49 75-126 4-58 (60)
69 3vk6_A E3 ubiquitin-protein li 98.4 2.2E-07 7.6E-12 60.8 4.4 46 79-126 3-48 (101)
70 3t6p_A Baculoviral IAP repeat- 98.4 3.3E-08 1.1E-12 79.2 -0.2 43 76-126 294-337 (345)
71 2bay_A PRE-mRNA splicing facto 98.3 1.8E-07 6.2E-12 56.4 2.0 52 77-132 3-55 (61)
72 3nw0_A Non-structural maintena 97.7 2.2E-05 7.7E-10 59.7 3.5 51 76-128 179-230 (238)
73 2ko5_A Ring finger protein Z; 95.4 0.0045 1.5E-07 39.8 1.2 48 75-128 26-74 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 94.3 0.025 8.5E-07 36.6 2.5 34 77-110 3-36 (101)
75 2lri_C Autoimmune regulator; Z 94.2 0.033 1.1E-06 33.5 2.7 49 74-125 9-60 (66)
76 1wil_A KIAA1045 protein; ring 93.2 0.072 2.5E-06 33.5 3.0 37 73-110 11-47 (89)
77 2lbm_A Transcriptional regulat 90.9 0.58 2E-05 32.4 5.7 47 75-124 61-117 (142)
78 3m62_A Ubiquitin conjugation f 86.3 0.44 1.5E-05 42.7 3.2 59 75-137 889-948 (968)
79 2cs3_A Protein C14ORF4, MY039 83.9 1 3.4E-05 28.0 3.1 39 75-113 13-52 (93)
80 2k16_A Transcription initiatio 83.7 0.41 1.4E-05 29.1 1.3 51 75-125 16-69 (75)
81 3ql9_A Transcriptional regulat 82.9 1.5 5.1E-05 29.8 3.9 47 75-124 55-111 (129)
82 3lqh_A Histone-lysine N-methyl 81.8 0.38 1.3E-05 34.8 0.7 51 77-127 2-66 (183)
83 1f62_A Transcription factor WS 81.5 0.53 1.8E-05 26.3 1.1 45 79-123 2-49 (51)
84 3u5n_A E3 ubiquitin-protein li 80.5 0.24 8.2E-06 36.3 -0.8 48 75-125 5-55 (207)
85 2l5u_A Chromodomain-helicase-D 80.3 0.52 1.8E-05 27.6 0.8 47 75-124 9-58 (61)
86 1z60_A TFIIH basal transcripti 79.6 1 3.6E-05 26.3 2.0 43 78-121 16-58 (59)
87 3o36_A Transcription intermedi 79.0 0.35 1.2E-05 34.7 -0.3 47 76-125 3-52 (184)
88 3v43_A Histone acetyltransfera 77.8 2.5 8.7E-05 27.7 3.7 47 76-122 4-62 (112)
89 2ysm_A Myeloid/lymphoid or mix 74.4 0.62 2.1E-05 30.5 -0.0 48 75-122 5-55 (111)
90 1weo_A Cellulose synthase, cat 74.0 7.4 0.00025 24.6 4.8 51 76-126 15-69 (93)
91 1wep_A PHF8; structural genomi 72.9 3.4 0.00012 25.2 3.2 48 77-125 12-64 (79)
92 2lv9_A Histone-lysine N-methyl 71.2 2.1 7.1E-05 27.5 1.9 48 77-125 28-77 (98)
93 1mm2_A MI2-beta; PHD, zinc fin 71.2 0.53 1.8E-05 27.5 -0.9 48 75-125 7-57 (61)
94 2zet_C Melanophilin; complex, 69.3 3.3 0.00011 28.9 2.8 48 75-123 66-116 (153)
95 3i2d_A E3 SUMO-protein ligase 68.0 4.4 0.00015 32.4 3.5 55 77-133 249-306 (371)
96 1fp0_A KAP-1 corepressor; PHD 66.8 0.96 3.3E-05 28.6 -0.4 47 75-124 23-72 (88)
97 4fo9_A E3 SUMO-protein ligase 66.1 4.4 0.00015 32.3 3.2 56 77-134 215-273 (360)
98 2ro1_A Transcription intermedi 65.6 0.79 2.7E-05 33.1 -1.1 46 77-125 2-50 (189)
99 2vpb_A Hpygo1, pygopus homolog 65.0 5.6 0.00019 23.4 2.8 34 75-108 6-41 (65)
100 2l43_A N-teminal domain from h 64.4 6.8 0.00023 24.5 3.3 51 75-125 23-76 (88)
101 2yt5_A Metal-response element- 62.6 2.7 9.3E-05 24.6 1.1 50 75-124 4-61 (66)
102 1we9_A PHD finger family prote 62.3 2.7 9.2E-05 24.4 1.0 49 75-123 4-57 (64)
103 2yql_A PHD finger protein 21A; 61.7 0.26 9E-06 28.3 -3.5 45 75-122 7-54 (56)
104 1joc_A EEA1, early endosomal a 60.8 9.1 0.00031 25.6 3.6 32 77-108 69-101 (125)
105 1weu_A Inhibitor of growth fam 59.7 2.7 9.1E-05 26.7 0.7 46 76-125 35-86 (91)
106 2kgg_A Histone demethylase jar 59.5 2.6 9E-05 23.5 0.6 44 79-122 4-52 (52)
107 1wen_A Inhibitor of growth fam 58.9 3.1 0.00011 25.0 0.9 46 76-125 15-66 (71)
108 1zbd_B Rabphilin-3A; G protein 57.2 29 0.00099 23.4 5.7 34 75-108 53-88 (134)
109 2ri7_A Nucleosome-remodeling f 57.2 1.6 5.4E-05 30.8 -0.8 47 76-123 7-58 (174)
110 3mjh_B Early endosome antigen 55.2 2.7 9.4E-05 21.6 0.2 11 78-88 6-16 (34)
111 2ku3_A Bromodomain-containing 54.6 12 0.00041 22.3 3.1 49 74-122 13-64 (71)
112 3shb_A E3 ubiquitin-protein li 51.4 1.2 4.2E-05 27.4 -1.9 45 79-123 28-76 (77)
113 2d8v_A Zinc finger FYVE domain 51.3 6.4 0.00022 23.4 1.3 32 75-110 6-38 (67)
114 1wem_A Death associated transc 51.1 14 0.00049 22.0 3.0 47 77-124 16-70 (76)
115 2a20_A Regulating synaptic mem 50.9 7.2 0.00024 22.6 1.5 34 74-107 6-40 (62)
116 2kwj_A Zinc finger protein DPF 49.1 3.3 0.00011 27.2 -0.2 45 78-122 2-59 (114)
117 2e6s_A E3 ubiquitin-protein li 49.0 2 6.9E-05 26.3 -1.2 46 78-123 27-76 (77)
118 3zyq_A Hepatocyte growth facto 48.8 55 0.0019 23.9 6.5 33 76-108 163-196 (226)
119 3ask_A E3 ubiquitin-protein li 48.2 1.6 5.6E-05 32.5 -2.0 45 79-123 176-224 (226)
120 3asl_A E3 ubiquitin-protein li 48.0 1.9 6.7E-05 25.8 -1.3 45 79-123 20-68 (70)
121 1wd2_A Ariadne-1 protein homol 47.9 3.9 0.00013 23.7 0.0 16 112-127 3-18 (60)
122 3vhs_A ATPase wrnip1; zinc fin 45.2 8.4 0.00029 18.3 1.0 15 117-131 8-22 (29)
123 2cu8_A Cysteine-rich protein 2 42.9 15 0.0005 21.6 2.1 40 77-127 9-48 (76)
124 1xwh_A Autoimmune regulator; P 42.5 8.4 0.00029 22.5 0.9 46 75-123 6-54 (66)
125 1iml_A CRIP, cysteine rich int 42.2 8.6 0.00029 22.7 1.0 11 79-89 29-39 (76)
126 1x64_A Alpha-actinin-2 associa 41.5 28 0.00097 21.1 3.4 41 75-127 23-63 (89)
127 1z2q_A LM5-1; membrane protein 41.4 13 0.00046 22.8 1.8 33 76-108 20-53 (84)
128 2yw8_A RUN and FYVE domain-con 41.4 14 0.00047 22.6 1.8 33 76-108 18-51 (82)
129 2e6r_A Jumonji/ARID domain-con 41.1 5.5 0.00019 25.1 -0.1 49 75-123 14-65 (92)
130 1vfy_A Phosphatidylinositol-3- 40.8 13 0.00046 22.1 1.7 32 77-108 11-43 (73)
131 2co8_A NEDD9 interacting prote 39.8 23 0.00078 21.3 2.7 41 76-127 14-54 (82)
132 1wfk_A Zinc finger, FYVE domai 39.8 15 0.0005 22.9 1.8 34 75-108 7-41 (88)
133 2cor_A Pinch protein; LIM doma 39.7 23 0.0008 21.0 2.7 40 76-127 14-53 (79)
134 2gmg_A Hypothetical protein PF 38.8 4.3 0.00015 26.5 -0.8 25 96-126 71-95 (105)
135 3t7l_A Zinc finger FYVE domain 38.1 13 0.00044 23.2 1.4 33 77-109 20-53 (90)
136 2jvx_A NF-kappa-B essential mo 37.8 14 0.00048 17.9 1.2 14 116-129 4-17 (28)
137 1dvp_A HRS, hepatocyte growth 37.8 11 0.00038 27.5 1.1 33 76-108 160-193 (220)
138 2xb1_A Pygopus homolog 2, B-ce 37.0 12 0.0004 24.2 1.1 49 77-125 3-62 (105)
139 1wyh_A SLIM 2, skeletal muscle 36.6 25 0.00087 20.1 2.5 41 77-127 5-45 (72)
140 1x62_A C-terminal LIM domain p 36.3 20 0.00067 21.3 2.0 38 76-125 14-51 (79)
141 1wev_A Riken cDNA 1110020M19; 35.3 10 0.00035 23.6 0.5 49 76-124 15-72 (88)
142 2puy_A PHD finger protein 21A; 35.0 13 0.00043 21.2 0.9 45 76-123 4-51 (60)
143 2d8z_A Four and A half LIM dom 34.9 18 0.00063 20.7 1.6 38 77-126 5-42 (70)
144 2d8y_A Eplin protein; LIM doma 34.6 31 0.001 21.0 2.7 41 76-127 14-54 (91)
145 1x4u_A Zinc finger, FYVE domai 34.4 17 0.00058 22.3 1.4 33 76-108 13-46 (84)
146 2d8x_A Protein pinch; LIM doma 34.2 19 0.00064 20.7 1.6 39 77-127 5-43 (70)
147 1wew_A DNA-binding family prot 33.9 38 0.0013 20.3 3.0 48 76-124 15-72 (78)
148 3mpx_A FYVE, rhogef and PH dom 33.9 8.6 0.0003 30.8 0.0 35 77-111 375-410 (434)
149 1nyp_A Pinch protein; LIM doma 33.2 17 0.00057 20.6 1.2 39 77-127 5-43 (66)
150 1zfo_A LAsp-1; LIM domain, zin 31.7 14 0.00049 18.0 0.6 27 78-106 4-30 (31)
151 2o35_A Hypothetical protein DU 31.4 21 0.00072 22.9 1.5 12 102-113 43-54 (105)
152 3fyb_A Protein of unknown func 31.4 21 0.00073 22.9 1.5 11 102-112 42-52 (104)
153 1y02_A CARP2, FYVE-ring finger 30.6 17 0.00059 24.1 1.1 45 77-122 19-64 (120)
154 1x63_A Skeletal muscle LIM-pro 30.3 38 0.0013 19.9 2.6 41 77-127 15-55 (82)
155 1x4l_A Skeletal muscle LIM-pro 30.3 35 0.0012 19.6 2.4 40 77-126 5-46 (72)
156 1wig_A KIAA1808 protein; LIM d 30.0 31 0.0011 20.1 2.1 38 77-126 5-42 (73)
157 1x61_A Thyroid receptor intera 29.4 39 0.0013 19.3 2.5 40 77-126 5-44 (72)
158 1g47_A Pinch protein; LIM doma 29.3 33 0.0011 19.9 2.2 42 76-127 10-51 (77)
159 2dj7_A Actin-binding LIM prote 29.2 27 0.00093 20.8 1.7 40 76-126 14-53 (80)
160 1x4k_A Skeletal muscle LIM-pro 29.0 28 0.00095 20.0 1.7 41 77-127 5-45 (72)
161 2cur_A Skeletal muscle LIM-pro 28.9 25 0.00087 20.0 1.5 38 77-126 5-42 (69)
162 2dar_A PDZ and LIM domain prot 28.8 26 0.00089 21.3 1.7 40 76-127 24-63 (90)
163 2kw0_A CCMH protein; oxidoredu 28.7 41 0.0014 21.1 2.5 36 116-151 24-60 (90)
164 3o70_A PHD finger protein 13; 27.6 21 0.00072 21.0 1.0 48 75-123 17-66 (68)
165 1x6a_A LIMK-2, LIM domain kina 26.9 40 0.0014 19.8 2.2 37 78-126 16-52 (81)
166 1l8d_A DNA double-strand break 26.1 27 0.00091 22.3 1.4 11 117-127 49-59 (112)
167 1v6g_A Actin binding LIM prote 25.5 28 0.00095 20.6 1.3 38 78-127 16-53 (81)
168 2cuq_A Four and A half LIM dom 25.3 37 0.0013 19.9 1.9 38 77-126 15-52 (80)
169 3a1b_A DNA (cytosine-5)-methyl 24.5 56 0.0019 22.8 2.8 44 77-123 79-133 (159)
170 1x68_A FHL5 protein; four-and- 24.5 29 0.001 20.3 1.3 40 77-126 5-46 (76)
171 2jmo_A Parkin; IBR, E3 ligase, 24.5 4 0.00014 25.0 -2.8 14 97-110 55-68 (80)
172 2pv0_B DNA (cytosine-5)-methyl 24.1 60 0.002 26.0 3.3 45 77-124 93-148 (386)
173 1loi_A Cyclic 3',5'-AMP specif 24.0 2.8 9.5E-05 19.4 -2.6 11 102-112 7-17 (26)
174 1m3v_A FLIN4, fusion of the LI 22.9 55 0.0019 21.1 2.5 51 78-130 33-84 (122)
175 2hl7_A Cytochrome C-type bioge 22.9 54 0.0018 20.3 2.2 36 116-151 27-63 (84)
176 1a7i_A QCRP2 (LIM1); LIM domai 22.4 15 0.0005 21.9 -0.5 40 77-127 7-46 (81)
177 2dlo_A Thyroid receptor-intera 21.5 38 0.0013 20.0 1.3 38 77-126 15-52 (81)
178 3f6q_B LIM and senescent cell 21.4 44 0.0015 18.9 1.6 41 77-127 11-51 (72)
179 1x3h_A Leupaxin; paxillin fami 21.2 37 0.0013 19.9 1.2 38 78-127 16-53 (80)
180 2lq6_A Bromodomain-containing 20.3 41 0.0014 20.8 1.3 32 77-109 17-50 (87)
No 1
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=6.4e-15 Score=93.21 Aligned_cols=52 Identities=48% Similarity=1.105 Sum_probs=46.3
Q ss_pred CcccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCC
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLP 127 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~ 127 (168)
.++..|+||++.+..+..+..++|+|.||..|+..|+..+ ..||+||+.+.+
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-RTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-SSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-CcCcCcCCcCCC
Confidence 4567899999999988877778999999999999999875 789999998865
No 2
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=2.5e-14 Score=88.89 Aligned_cols=52 Identities=42% Similarity=1.027 Sum_probs=45.2
Q ss_pred CcccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCC
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLP 127 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~ 127 (168)
.++..|+||++.+..+..+..++|||.||..|+..|+..+ ..||+||..+..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-KKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-CCCcCcCccccC
Confidence 4567899999999877777778999999999999999875 689999998854
No 3
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.49 E-value=1.7e-14 Score=94.68 Aligned_cols=52 Identities=37% Similarity=0.980 Sum_probs=45.6
Q ss_pred CcccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCC
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLP 127 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~ 127 (168)
.++..|+||++.+..+..+..++|+|.||..|+..|+..+ ..||+||..+.+
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~-~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS-GTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT-CBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC-CcCcCcCccCCC
Confidence 4567899999999888877778999999999999999864 789999998854
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=3.1e-14 Score=89.72 Aligned_cols=52 Identities=46% Similarity=0.944 Sum_probs=45.8
Q ss_pred CcccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCC
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLP 127 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~ 127 (168)
.++..|+||++.+..+..+..++|+|.||..|+..|+..+ ..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-KVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-SBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-CcCCCcCccccc
Confidence 4567999999999988887778999999999999999875 689999998853
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.47 E-value=1.1e-14 Score=92.62 Aligned_cols=56 Identities=36% Similarity=0.898 Sum_probs=47.9
Q ss_pred CCcccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCCchH
Q 047964 74 PSESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDEI 130 (168)
Q Consensus 74 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~~~~ 130 (168)
..++..|+||++.+..+..+..++|+|.||..|+..|+..+ ..||+||..+....+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH-DSCPVCRKSLTGQNT 67 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT-CSCTTTCCCCCCSCS
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC-CcCcCcCCccCCccc
Confidence 34567999999999988877778999999999999999865 789999999866544
No 6
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.47 E-value=2e-14 Score=85.39 Aligned_cols=51 Identities=51% Similarity=1.132 Sum_probs=43.8
Q ss_pred CcccccccccccccCCcceEeeC-CCCcchHHHHHHHHHhCCCCCCCCCCcCC
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLN-CKHTFHRDCLDKWLQEYLATCPLCRTKVL 126 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~ 126 (168)
+++..|+||++.+..+..+..++ |||.||..|+..|++.+ ..||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~-~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH-STCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC-CSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcC-CcCcCCCCEeE
Confidence 45678999999998877766676 99999999999999864 78999999863
No 7
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.42 E-value=4.3e-14 Score=88.17 Aligned_cols=55 Identities=27% Similarity=0.710 Sum_probs=45.1
Q ss_pred CcccccccccccccCC----cceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCCchH
Q 047964 75 SESKDCAVCLSDFEDG----EMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDEI 130 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~----~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~~~~ 130 (168)
+++..|+||++.+..+ .....++|||.||..|+..|+..+ ..||+||..+...++
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRY 66 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCCBCCCCSC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-CCCCCCCCccChhhe
Confidence 4567999999998764 333457999999999999999875 789999999876544
No 8
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.40 E-value=1.1e-13 Score=87.93 Aligned_cols=66 Identities=21% Similarity=0.436 Sum_probs=51.3
Q ss_pred CcccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCCchHHhhHHhHhhhhhh
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDEIVAKYQHQQNLQNL 143 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~ 143 (168)
.+...|+||++.+.+|.. ++|||.||..|+..|+..+...||.||..+....+..+......++..
T Consensus 6 ~~~~~C~IC~~~~~~Pv~---~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~ 71 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVI---VSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALW 71 (78)
T ss_dssp SSSSSCTTTSCCCSSEEE---ETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHH
T ss_pred cccCCCCCccccccCCEE---cCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHH
Confidence 456799999999988754 799999999999999986557899999998766555554444444433
No 9
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=3e-13 Score=83.34 Aligned_cols=52 Identities=19% Similarity=0.537 Sum_probs=44.2
Q ss_pred CcccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCCch
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDE 129 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~~~ 129 (168)
.+...|+||++.+..+.. ++|||.||..|+..|+......||.||..+..++
T Consensus 13 ~~~~~C~IC~~~~~~p~~---~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQ---TECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCEECTTTCCEESSCCC---CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CcCCCCCCCChHhcCeeE---CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 456789999999988876 7999999999999999654568999999986543
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.39 E-value=3.2e-13 Score=80.05 Aligned_cols=51 Identities=35% Similarity=0.766 Sum_probs=42.2
Q ss_pred CcccccccccccccCC-cceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCC
Q 047964 75 SESKDCAVCLSDFEDG-EMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~-~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~ 126 (168)
.++..|+||++.+..+ ..+..++|+|.||..|+..|+..+ ..||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 3467899999998653 334557999999999999999976 88999999874
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2.8e-13 Score=83.88 Aligned_cols=53 Identities=30% Similarity=0.783 Sum_probs=43.2
Q ss_pred CCcccccccccccccCC----cceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCC
Q 047964 74 PSESKDCAVCLSDFEDG----EMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLP 127 (168)
Q Consensus 74 ~~~~~~C~IC~~~~~~~----~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~ 127 (168)
..+...|+||++.+..+ ..+..++|||.||..|+..|+..+ ..||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC-SSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC-CCCCCCCCccCc
Confidence 35577999999998764 223457999999999999999874 789999998753
No 12
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=2.4e-13 Score=87.27 Aligned_cols=52 Identities=31% Similarity=0.826 Sum_probs=40.2
Q ss_pred cccccccccccccC-----------CcceEee-CCCCcchHHHHHHHHHhCCCCCCCCCCcCCCc
Q 047964 76 ESKDCAVCLSDFED-----------GEMVRKL-NCKHTFHRDCLDKWLQEYLATCPLCRTKVLPD 128 (168)
Q Consensus 76 ~~~~C~IC~~~~~~-----------~~~~~~~-~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~~ 128 (168)
+++.|+||++.+.. +..+..+ +|+|.||..||..|+..+ .+||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN-NRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC-CBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC-CCCCCcCCCcchh
Confidence 45678888888754 2333334 699999999999999875 7899999988543
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.36 E-value=2.6e-13 Score=82.74 Aligned_cols=54 Identities=26% Similarity=0.696 Sum_probs=43.8
Q ss_pred cccccccccccccCC----cceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCCchH
Q 047964 76 ESKDCAVCLSDFEDG----EMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDEI 130 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~----~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~~~~ 130 (168)
++..|+||++.+..+ ..+..++|||.||..|+..|+..+ ..||.||..+...++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~ 59 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRY 59 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC-SBCTTTCCBCTTTCE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC-CCCCCCCccCCccce
Confidence 356899999998764 333457999999999999999874 789999999865443
No 14
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.35 E-value=7.6e-13 Score=90.01 Aligned_cols=52 Identities=27% Similarity=0.555 Sum_probs=41.0
Q ss_pred cccccccccccccCCc---------------ceEeeCCCCcchHHHHHHHHHh----CCCCCCCCCCcCCC
Q 047964 76 ESKDCAVCLSDFEDGE---------------MVRKLNCKHTFHRDCLDKWLQE----YLATCPLCRTKVLP 127 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~---------------~~~~~~C~H~f~~~Ci~~w~~~----~~~~CP~Cr~~~~~ 127 (168)
.+..|+||++.+..+. .+..++|+|.||..||..|+.. ....||+||+.+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 3568999999987653 2335799999999999999963 23579999998854
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=6.7e-13 Score=83.16 Aligned_cols=54 Identities=22% Similarity=0.476 Sum_probs=44.1
Q ss_pred CCcccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCCchH
Q 047964 74 PSESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDEI 130 (168)
Q Consensus 74 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~~~~ 130 (168)
..+...|+||++.+.++.. .++|||.||..|+..|+... ..||+||..+...++
T Consensus 12 ~~~~~~C~IC~~~~~~p~~--~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 12 LTPYILCSICKGYLIDATT--ITECLHTFCKSCIVRHFYYS-NRCPKCNIVVHQTQP 65 (72)
T ss_dssp CCGGGSCTTTSSCCSSCEE--CSSSCCEECHHHHHHHHHHC-SSCTTTCCCCCSSCS
T ss_pred cCCCCCCCCCChHHHCcCE--ECCCCCHHHHHHHHHHHHcC-CcCCCcCcccCcccc
Confidence 3456799999999887654 24999999999999999864 789999999865443
No 16
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.34 E-value=2.7e-13 Score=90.38 Aligned_cols=59 Identities=27% Similarity=0.615 Sum_probs=46.7
Q ss_pred cccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCCchHHhhHHh
Q 047964 76 ESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDEIVAKYQH 136 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~~~~~~~~~~ 136 (168)
++..|+||++.+..+.. .++|||.||..|+..|+......||.||.++....+..+...
T Consensus 21 ~~~~C~IC~~~~~~p~~--~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~ 79 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARL--CPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWA 79 (100)
T ss_dssp HHTBCTTTCSBCSSEEE--CTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTH
T ss_pred CCCCCccCCccccCccc--cCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHH
Confidence 46789999999876532 279999999999999999754689999999976665544333
No 17
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=7.3e-13 Score=84.81 Aligned_cols=48 Identities=19% Similarity=0.522 Sum_probs=41.2
Q ss_pred CcccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCC
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~ 126 (168)
.+...|+||++.+..+.. ++|||.||..|+..|+... ..||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p~~---~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVV---TKCRHYFCESCALEHFRAT-PRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSEEE---CTTSCEEEHHHHHHHHHHC-SBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCeeE---ccCCCHhHHHHHHHHHHCC-CcCCCcCcccc
Confidence 446789999999877643 7999999999999999864 78999999985
No 18
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=2.8e-13 Score=84.71 Aligned_cols=51 Identities=29% Similarity=0.519 Sum_probs=42.6
Q ss_pred CcccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCCch
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDE 129 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~~~ 129 (168)
.++..|+||++.+..+.. ++|||.||..|+..|+..+ ..||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~---~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVS---LPCKHVFCYLCVKGASWLG-KRCALCRQEIPEDF 63 (71)
T ss_dssp SSCCBCSSSSSBCSSEEE---ETTTEEEEHHHHHHCTTCS-SBCSSSCCBCCHHH
T ss_pred CCCCCCccCCcccCCCEE---ccCCCHHHHHHHHHHHHCC-CcCcCcCchhCHhh
Confidence 456789999999877643 7999999999999999865 78999999985443
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=2e-12 Score=83.75 Aligned_cols=55 Identities=29% Similarity=0.703 Sum_probs=44.5
Q ss_pred CCcccccccccccccCCcc-eEeeCCCCcchHHHHHHHHHhC--CCCCCCCCCcCCCc
Q 047964 74 PSESKDCAVCLSDFEDGEM-VRKLNCKHTFHRDCLDKWLQEY--LATCPLCRTKVLPD 128 (168)
Q Consensus 74 ~~~~~~C~IC~~~~~~~~~-~~~~~C~H~f~~~Ci~~w~~~~--~~~CP~Cr~~~~~~ 128 (168)
..+...|+||++.+..... ...++|||.||..|+..|+..+ ...||.||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 3456799999999987543 4457999999999999999864 35799999988654
No 20
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.32 E-value=7e-13 Score=91.62 Aligned_cols=49 Identities=27% Similarity=0.574 Sum_probs=42.3
Q ss_pred cccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCC
Q 047964 76 ESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLP 127 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~ 127 (168)
++..|+||++.+..+.. ++|||.||..|+..|+..+...||.||..+..
T Consensus 51 ~~~~C~IC~~~~~~p~~---~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPIT---TVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEEE---CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcEE---eeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 45689999999887755 79999999999999998654589999999865
No 21
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.31 E-value=1.3e-12 Score=87.98 Aligned_cols=50 Identities=30% Similarity=0.639 Sum_probs=41.5
Q ss_pred cccccccccccccCCc---------------ceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCC
Q 047964 76 ESKDCAVCLSDFEDGE---------------MVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~---------------~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~ 126 (168)
+++.|+||++.+..+. .+..++|+|.||..||..|+..+ .+||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-QVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC-SBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC-CcCcCCCCcce
Confidence 4678999999987551 24557999999999999999874 78999999863
No 22
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.31 E-value=1.8e-13 Score=87.06 Aligned_cols=56 Identities=25% Similarity=0.569 Sum_probs=45.9
Q ss_pred CCcccccccccccccCCcceEeeCCCCcchHHHHHHHHHhC------CCCCCCCCCcCCCchHHh
Q 047964 74 PSESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEY------LATCPLCRTKVLPDEIVA 132 (168)
Q Consensus 74 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~------~~~CP~Cr~~~~~~~~~~ 132 (168)
..++..|+||++.+..+.. ++|||.||..|+..|+... ...||.||..+....+..
T Consensus 9 ~~~~~~C~IC~~~~~~p~~---l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~ 70 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPLS---LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQA 70 (79)
T ss_dssp CCCCCEETTTTEECSSCCC---CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGT
T ss_pred cccCCCCcCCCcccCCeeE---CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCc
Confidence 3456799999999988765 7999999999999999752 457999999987655443
No 23
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.31 E-value=3.3e-13 Score=89.65 Aligned_cols=64 Identities=19% Similarity=0.494 Sum_probs=48.8
Q ss_pred cccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCCchHHhhHHhHhhhhh
Q 047964 76 ESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDEIVAKYQHQQNLQN 142 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~ 142 (168)
+...|+||++.+..+.. .++|||.||..|+..|+..+ ..||.||..+....+..+.......+.
T Consensus 21 ~~~~C~IC~~~~~~p~~--~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~~n~~l~~~i~~ 84 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMI--IPQCSHNYCSLCIRKFLSYK-TQCPTCCVTVTEPDLKNNRILDELVKS 84 (99)
T ss_dssp HHTBCTTTCSBCSSEEE--CTTTCCEEEHHHHHHHHTTC-CBCTTTCCBCCGGGCEECHHHHHHHHH
T ss_pred CCCCcccCChhhCCcCE--ECCCCCHhhHHHHHHHHHCC-CCCCCCCCcCChhhCCcCHHHHHHHHH
Confidence 45789999999887644 13899999999999999864 789999999876555555444444333
No 24
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.31 E-value=1.2e-12 Score=85.63 Aligned_cols=63 Identities=24% Similarity=0.551 Sum_probs=47.7
Q ss_pred CcccccccccccccCCcceEeeC-CCCcchHHHHHHHHHhC-CCCCCCCCCcC-CCchHHhhHHhHhhh
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLN-CKHTFHRDCLDKWLQEY-LATCPLCRTKV-LPDEIVAKYQHQQNL 140 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~w~~~~-~~~CP~Cr~~~-~~~~~~~~~~~~~~~ 140 (168)
.++..|+||++.+..|.. ++ |||.||..|+..|+... ...||.||..+ ....+..+......+
T Consensus 11 ~~~~~C~IC~~~~~~p~~---~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i 76 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVV---IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAV 76 (92)
T ss_dssp CTTTEETTTTEECSSCEE---CTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHH
T ss_pred CcCCCCCCCChhhcCceE---CCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHH
Confidence 456799999999988765 78 99999999999999753 25899999997 344444444444333
No 25
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=8.7e-13 Score=82.64 Aligned_cols=53 Identities=26% Similarity=0.623 Sum_probs=42.8
Q ss_pred CCcccccccccccccCCcceEeeCCCCcchHHHHHHHHHh--CCCCCCCCCCcCCCch
Q 047964 74 PSESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQE--YLATCPLCRTKVLPDE 129 (168)
Q Consensus 74 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--~~~~CP~Cr~~~~~~~ 129 (168)
..++..|+||++.+..+.. ++|||.||..|+..|+.. ....||+||..+..++
T Consensus 17 ~~~~~~C~IC~~~~~~~~~---~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVT---IDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEE---CTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred CccCCEeccCCcccCCeEE---cCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 3456799999999886554 699999999999999973 3357999999986543
No 26
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.30 E-value=1.4e-12 Score=82.09 Aligned_cols=51 Identities=22% Similarity=0.550 Sum_probs=42.3
Q ss_pred CCcccccccccccccCCcceEeeC-CCCcchHHHHHHHHHhCC-CCCCCCCCcCCC
Q 047964 74 PSESKDCAVCLSDFEDGEMVRKLN-CKHTFHRDCLDKWLQEYL-ATCPLCRTKVLP 127 (168)
Q Consensus 74 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~w~~~~~-~~CP~Cr~~~~~ 127 (168)
..++..|+||++.+..+.. ++ |||.||..|+..|+.... ..||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~---~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 12 IPDELLCLICKDIMTDAVV---IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp SCGGGSCSSSCCCCTTCEE---CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCCCcCCChHHhCCeE---cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 3456799999999988765 78 999999999999998642 479999998643
No 27
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.29 E-value=1.4e-12 Score=80.61 Aligned_cols=49 Identities=33% Similarity=0.854 Sum_probs=41.4
Q ss_pred CcccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCC
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~ 126 (168)
+.+..|+||++.+..+. ..++|||.||..|+..|+..+ ..||.||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~--~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNYS--MALPCLHAFCYVCITRWIRQN-PTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSCE--EETTTTEEESTTHHHHHHHHS-CSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCCc--EecCCCCeeHHHHHHHHHhCc-CcCcCCChhhH
Confidence 34678999999987653 347999999999999999875 78999999885
No 28
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.29 E-value=2.1e-12 Score=79.26 Aligned_cols=54 Identities=20% Similarity=0.523 Sum_probs=43.5
Q ss_pred ccccccccc-cccCCcce-EeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCCchH
Q 047964 77 SKDCAVCLS-DFEDGEMV-RKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDEI 130 (168)
Q Consensus 77 ~~~C~IC~~-~~~~~~~~-~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~~~~ 130 (168)
+..|+||++ .+..+... ..++|||.||..|+..|+.++...||.||..+..+++
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 568999999 77777542 2369999999999999987665689999999866544
No 29
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.29 E-value=5.9e-13 Score=93.72 Aligned_cols=48 Identities=29% Similarity=0.888 Sum_probs=41.2
Q ss_pred ccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCCc
Q 047964 77 SKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPD 128 (168)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~~ 128 (168)
+..|+||++.+..+.. ++|||.||..|+..|+..+ ..||.||.++...
T Consensus 53 ~~~C~iC~~~~~~~~~---~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVT---LNCAHSFCSYCINEWMKRK-IECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSSEEE---ETTSCEEEHHHHHHHTTTC-SBCTTTCCBCCCE
T ss_pred cCCCcccCcccCCceE---CCCCCCccHHHHHHHHHcC-CcCCCCCCcCCCC
Confidence 4579999999887644 7999999999999999864 7899999998654
No 30
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.28 E-value=1e-12 Score=84.46 Aligned_cols=53 Identities=25% Similarity=0.641 Sum_probs=44.1
Q ss_pred CcccccccccccccCCcceEeeCCCCcchHHHHHHHHHhC-----CCCCCCCCCcCCCchH
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEY-----LATCPLCRTKVLPDEI 130 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~-----~~~CP~Cr~~~~~~~~ 130 (168)
.++..|+||++.+..+.. ++|||.||..|+..|+... ...||.||..+....+
T Consensus 17 ~~~~~C~IC~~~~~~p~~---~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVS---ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNL 74 (85)
T ss_dssp CTTTSCTTTCSCCSSCEE---CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCC
T ss_pred ccCCCCcCCChhhCccee---CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhC
Confidence 456799999999887764 7999999999999999873 4579999999865443
No 31
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.27 E-value=7.3e-13 Score=89.39 Aligned_cols=51 Identities=25% Similarity=0.680 Sum_probs=42.5
Q ss_pred CcccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCCc
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPD 128 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~~ 128 (168)
.++..|+||++.+..+.. .++|||.||..|+..|+..+ ..||.||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p~~--~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATT--IIECLHSFCKTCIVRYLETS-KYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSSEEE--ETTTCCEEEHHHHHHHHTSC-SBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhCcCE--eCCCCChhhHHHHHHHHHhC-CcCcCCCcccccc
Confidence 346789999999887644 23999999999999999865 7899999998754
No 32
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=1.3e-12 Score=83.99 Aligned_cols=54 Identities=30% Similarity=0.693 Sum_probs=44.6
Q ss_pred CCcccccccccccccCCcceEeeCCCCcchHHHHHHHHHh-----CCCCCCCCCCcCCCchH
Q 047964 74 PSESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQE-----YLATCPLCRTKVLPDEI 130 (168)
Q Consensus 74 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-----~~~~CP~Cr~~~~~~~~ 130 (168)
..+...|+||++.+..+.. ++|||.||..|+..|+.. ....||.||..+...++
T Consensus 16 ~~~~~~C~IC~~~~~~p~~---~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPLS---LDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENI 74 (85)
T ss_dssp CCCCCCCTTTCSCCSSCBC---CSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSC
T ss_pred ccCCCCCCCCCcccCCcee---CCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhc
Confidence 3456799999999988765 799999999999999986 24689999999876443
No 33
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.25 E-value=3.1e-12 Score=87.63 Aligned_cols=65 Identities=17% Similarity=0.480 Sum_probs=50.2
Q ss_pred CCCcccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCCchHHhhHHhHhhh
Q 047964 73 SPSESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDEIVAKYQHQQNL 140 (168)
Q Consensus 73 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~ 140 (168)
...+...|+||++.+..+.. ++|||.||..|+..|+......||.||..+....+..+.......
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~---~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i 78 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQ---TPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREI 78 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEE---CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHH
T ss_pred CCCCCCCCCcCChhhcCeEE---CCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHH
Confidence 34556799999999887744 799999999999999987645899999999766554444433333
No 34
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=8.1e-12 Score=76.05 Aligned_cols=45 Identities=27% Similarity=0.674 Sum_probs=37.9
Q ss_pred CCcccccccccccccCCcceEeeCCCCcchHHHHHHHHHh--CCCCCCCC
Q 047964 74 PSESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQE--YLATCPLC 121 (168)
Q Consensus 74 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--~~~~CP~C 121 (168)
..++..|+||++.+.++.. ++|||.||..|+..|++. ....||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~---~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVT---IDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEE---CTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEE---eCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3456799999999987755 799999999999999985 34579998
No 35
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=7.8e-13 Score=82.28 Aligned_cols=48 Identities=31% Similarity=0.940 Sum_probs=40.8
Q ss_pred CcccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCC
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLP 127 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~ 127 (168)
.+...|+||++.+.. ..++|+|.||..|+..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccC
Confidence 456799999999876 34899999999999999985 4789999998854
No 36
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.22 E-value=4e-12 Score=90.72 Aligned_cols=59 Identities=22% Similarity=0.467 Sum_probs=46.5
Q ss_pred cccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCCc-hHHhhHHhH
Q 047964 76 ESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPD-EIVAKYQHQ 137 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~~-~~~~~~~~~ 137 (168)
+...|+||++.+..+.. ++|||.||..|+..|+......||.||..+... .+..+....
T Consensus 77 ~~~~C~IC~~~~~~pv~---~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~ 136 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVT---TECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQ 136 (150)
T ss_dssp HHTBCTTTSSBCSSEEE---CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHH
T ss_pred cCCEeecCChhhcCCEE---cCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHH
Confidence 45689999999887755 799999999999999987545899999998765 344443333
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.2e-11 Score=73.80 Aligned_cols=45 Identities=27% Similarity=0.874 Sum_probs=37.5
Q ss_pred CCcccccccccccccCCcceEeeCCCCcchHHHHHHHHHh--CCCCCCCC
Q 047964 74 PSESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQE--YLATCPLC 121 (168)
Q Consensus 74 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--~~~~CP~C 121 (168)
..+...|+||++.+..+.. ++|||.||..|+..|+.. ....||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p~~---~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEPVI---IECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSCCC---CSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCccEe---CCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3456799999999988765 799999999999999754 34679998
No 38
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.20 E-value=1.4e-12 Score=88.20 Aligned_cols=54 Identities=24% Similarity=0.637 Sum_probs=44.1
Q ss_pred ccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCC--CCCCCCCCcCCCchHHhh
Q 047964 77 SKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYL--ATCPLCRTKVLPDEIVAK 133 (168)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~--~~CP~Cr~~~~~~~~~~~ 133 (168)
...|+||++.+..+.. ++|||.||..|+..|+.... ..||.||..+....+..+
T Consensus 21 ~~~C~IC~~~~~~p~~---~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~ 76 (112)
T 1jm7_A 21 ILECPICLELIKEPVS---TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQES 76 (112)
T ss_dssp HTSCSSSCCCCSSCCB---CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCC
T ss_pred CCCCcccChhhcCeEE---CCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCcc
Confidence 5689999999988765 79999999999999998542 379999999876554433
No 39
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.1e-11 Score=79.36 Aligned_cols=53 Identities=25% Similarity=0.672 Sum_probs=42.9
Q ss_pred CcccccccccccccCCcceEeeCCC-----CcchHHHHHHHHHhCC-CCCCCCCCcCCCc
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCK-----HTFHRDCLDKWLQEYL-ATCPLCRTKVLPD 128 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~-----H~f~~~Ci~~w~~~~~-~~CP~Cr~~~~~~ 128 (168)
.++..|.||++++..+..+ .+||+ |.||..|+..|+..+. ..||+||..+..+
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 4567899999998766654 47996 9999999999998653 4799999998543
No 40
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.18 E-value=5.8e-12 Score=91.08 Aligned_cols=50 Identities=28% Similarity=0.636 Sum_probs=41.8
Q ss_pred cccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCC
Q 047964 76 ESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLP 127 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~ 127 (168)
+...|+||++.+..+.. .++|||.||..|+..|+..+...||.||..+..
T Consensus 53 ~~~~C~IC~~~~~~p~~--~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMT--TKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSSEEE--ETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhCcCE--eCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 45689999999887543 249999999999999998755789999999853
No 41
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.17 E-value=2.5e-12 Score=87.86 Aligned_cols=50 Identities=30% Similarity=0.639 Sum_probs=1.1
Q ss_pred cccccccccccccCCc---------------ceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCC
Q 047964 76 ESKDCAVCLSDFEDGE---------------MVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~---------------~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~ 126 (168)
+++.|+||++.+..+. .+..++|+|.||..||..|+..+ ..||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~-~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-QVCPLDNREWE 111 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC-CcCCCCCCeee
Confidence 4678999999987532 22234899999999999999874 78999999863
No 42
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.16 E-value=2.1e-11 Score=77.63 Aligned_cols=56 Identities=20% Similarity=0.485 Sum_probs=41.7
Q ss_pred CcccccccccccccCCcc-eEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCCchH
Q 047964 75 SESKDCAVCLSDFEDGEM-VRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDEI 130 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~-~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~~~~ 130 (168)
+++..|+||++.+..+.. ...++|||.||..|+..++......||.||+.+....+
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 456789999998854322 11124999999999999986555689999999865443
No 43
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.15 E-value=1.2e-12 Score=89.30 Aligned_cols=49 Identities=24% Similarity=0.669 Sum_probs=42.2
Q ss_pred CcccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCC
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~ 126 (168)
.++..|+||++.+..+.. ++|||.||..|+..|+..+...||.||..+.
T Consensus 13 ~~~~~C~iC~~~~~~p~~---~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILVEPVT---LPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCSSCEE---CTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCccCCcccCceeE---cCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 346789999999987765 7999999999999999765568999999874
No 44
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.14 E-value=2.6e-11 Score=78.43 Aligned_cols=62 Identities=11% Similarity=0.079 Sum_probs=50.5
Q ss_pred CcccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCCchHHhhHHhHhhh
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDEIVAKYQHQQNL 140 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~ 140 (168)
.+...|+||++.+.+|.. ++|||.|+..||..|+..+ ..||.||.++....+.++.......
T Consensus 12 p~~~~CpI~~~~m~dPV~---~~cGhtf~r~~I~~~l~~~-~~cP~~~~~l~~~~l~pn~~L~~~i 73 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVR---LPSGTVMDRSIILRHLLNS-PTDPFNRQMLTESMLEPVPELKEQI 73 (85)
T ss_dssp CTTTBCTTTCSBCSSEEE---CTTSCEEEHHHHHHHHHHC-SBCTTTCCBCCGGGCEECHHHHHHH
T ss_pred chheECcccCchhcCCeE---CCCCCEECHHHHHHHHhcC-CCCCCCcCCCChHhcchHHHHHHHH
Confidence 346789999999998876 7999999999999999864 7899999999776666655544443
No 45
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.14 E-value=1.9e-11 Score=84.71 Aligned_cols=55 Identities=27% Similarity=0.710 Sum_probs=44.7
Q ss_pred CcccccccccccccCC----cceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCCchH
Q 047964 75 SESKDCAVCLSDFEDG----EMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDEI 130 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~----~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~~~~ 130 (168)
.++..|+||++.+..+ .....++|||.||..|+..|++.+ ..||.||..+....+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC-SBCTTTCCBCTTTCE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC-CCCCCCCCcCccccc
Confidence 3467899999998765 333458999999999999999865 689999999865544
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.11 E-value=2.4e-11 Score=82.82 Aligned_cols=52 Identities=31% Similarity=0.665 Sum_probs=43.8
Q ss_pred cccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCCchH
Q 047964 76 ESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDEI 130 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~~~~ 130 (168)
++..|+||++.+..+.. ++|||.||..|+..|+......||.||.++....+
T Consensus 22 ~~~~C~IC~~~~~~p~~---~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 22 KSISCQICEHILADPVE---TSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp HHTBCTTTCSBCSSEEE---CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCCcHhcCcEE---cCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence 35689999999887654 79999999999999998754789999999876543
No 47
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.11 E-value=3.5e-11 Score=80.14 Aligned_cols=66 Identities=12% Similarity=0.072 Sum_probs=53.4
Q ss_pred CcccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCCchHHhhHHhHhhhhhhh
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDEIVAKYQHQQNLQNLD 144 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~ 144 (168)
.+...|+||++.+.+|.. ++|||.||..||..|+.. ...||.||.++....+.++.......+...
T Consensus 27 p~~~~CpI~~~~m~dPV~---~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~ 92 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVR---LPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWM 92 (100)
T ss_dssp STTTBCTTTCSBCSSEEE---ETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHH
T ss_pred cHhhCCcCccCcccCCeE---CCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHH
Confidence 346789999999998876 799999999999999985 478999999998777766665555554443
No 48
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.09 E-value=5.7e-11 Score=78.81 Aligned_cols=65 Identities=17% Similarity=0.167 Sum_probs=52.6
Q ss_pred CcccccccccccccCCcceEeeCCC-CcchHHHHHHHHHhCCCCCCCCCCcCCCchHHhhHHhHhhhhhh
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCK-HTFHRDCLDKWLQEYLATCPLCRTKVLPDEIVAKYQHQQNLQNL 143 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~-H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~ 143 (168)
.+...|+||++.+.+|.. ++|| |.||..||..|+..+ ..||.||.++....+.++.......+..
T Consensus 20 p~~~~CpI~~~~m~dPV~---~~cG~htf~r~cI~~~l~~~-~~cP~~~~~l~~~~L~pn~~Lk~~I~~~ 85 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVV---LPSSRVTVDRSTIARHLLSD-QTDPFNRSPLTMDQIRPNTELKEKIQRW 85 (98)
T ss_dssp CTTTBCTTTCSBCSSEEE---CTTTCCEEEHHHHHHHTTTS-CBCTTTCSBCCTTTSEECHHHHHHHHHH
T ss_pred cHhcCCcCccccccCCeE---CCCCCeEECHHHHHHHHHhC-CCCCCCCCCCChhhceEcHHHHHHHHHH
Confidence 346789999999998876 7999 999999999999864 7899999999877766665555554444
No 49
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.05 E-value=2.7e-11 Score=83.95 Aligned_cols=55 Identities=27% Similarity=0.710 Sum_probs=44.8
Q ss_pred CcccccccccccccCC----cceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCCchH
Q 047964 75 SESKDCAVCLSDFEDG----EMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDEI 130 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~----~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~~~~ 130 (168)
++...|+||++.+..+ .....++|||.||..|+.+|+... .+||+||.++..+++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~ 128 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRY 128 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC-SBCTTTCCBCCGGGE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC-CCCCCCCCcCChhcc
Confidence 4567899999998754 223457999999999999999875 789999999976554
No 50
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.04 E-value=1e-10 Score=84.88 Aligned_cols=61 Identities=18% Similarity=0.475 Sum_probs=48.7
Q ss_pred CCCcccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCCchHHhhHHh
Q 047964 73 SPSESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDEIVAKYQH 136 (168)
Q Consensus 73 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~~~~~~~~~~ 136 (168)
...+...|+||++.+..|.. ++|||.||..|+..|+......||.||..+....+..+...
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~---~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~ 74 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQ---TPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFA 74 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEE---CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHH
T ss_pred CCCCCCCCCCCChhhcCcEE---CCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHH
Confidence 34567899999999988754 79999999999999998754589999999976655444333
No 51
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=1.7e-10 Score=75.95 Aligned_cols=69 Identities=16% Similarity=0.409 Sum_probs=52.6
Q ss_pred CcccccccccccccCCcceEeeC-CCCcchHHHHHHHHHhC-----CCCCCC--CCCc-CCCchHHhhHHhHhhhhhhhh
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLN-CKHTFHRDCLDKWLQEY-----LATCPL--CRTK-VLPDEIVAKYQHQQNLQNLDY 145 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~w~~~~-----~~~CP~--Cr~~-~~~~~~~~~~~~~~~~~~~~~ 145 (168)
.+...|+||++.+.+|.. ++ |||.||..||..|+..+ ...||. |+.. +...++.++......++....
T Consensus 5 ~~~~~CPI~~~~~~dPV~---~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~ 81 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVK---NKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNK 81 (94)
T ss_dssp SSCCBCTTTCSBCSSEEE---ESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHT
T ss_pred CcEeECcCcCchhcCCEE---cCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHH
Confidence 346789999999998765 75 99999999999999864 247999 9877 766666666666655555443
Q ss_pred c
Q 047964 146 Y 146 (168)
Q Consensus 146 ~ 146 (168)
.
T Consensus 82 ~ 82 (94)
T 2yu4_A 82 K 82 (94)
T ss_dssp T
T ss_pred H
Confidence 3
No 52
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=2e-10 Score=72.09 Aligned_cols=50 Identities=26% Similarity=0.545 Sum_probs=40.9
Q ss_pred CcccccccccccccCCcceEeeCCCCcchHHHHHHHHHhC-CCCCCCCCCcCC
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEY-LATCPLCRTKVL 126 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~-~~~CP~Cr~~~~ 126 (168)
+....|+||.+.+..+... ..|+|.||..|+..|++.+ ...||+||+++.
T Consensus 13 ~~i~~C~IC~~~i~~g~~C--~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSC--ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSSEEC--SSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccCCcc--CCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 4567999999999866542 3899999999999999754 257999999874
No 53
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.02 E-value=3.1e-11 Score=82.50 Aligned_cols=52 Identities=21% Similarity=0.604 Sum_probs=43.1
Q ss_pred cccccccccccccCCcceEee-CCCCcchHHHHHHHHHhCCCCCCCCCCcCCCchHHhh
Q 047964 76 ESKDCAVCLSDFEDGEMVRKL-NCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDEIVAK 133 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~~~~~~~ 133 (168)
+...|+||++.+..+.. + +|||.||..|+..|+. ..||.||..+....+..+
T Consensus 21 ~~~~C~IC~~~~~~pv~---~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n 73 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVC---LGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKIN 73 (117)
T ss_dssp HTTSCSSSCSCCSSCBC---CCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCC
T ss_pred hCCCCCCCChHhhCccE---eCCCCCHHHHHHHHHHhc---CCCcCCCCcCcccccccc
Confidence 46789999999988866 6 9999999999999986 579999999865444443
No 54
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.02 E-value=1.3e-10 Score=90.00 Aligned_cols=66 Identities=9% Similarity=0.162 Sum_probs=53.3
Q ss_pred cccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCCchHHhhHHhHhhhhhhh
Q 047964 76 ESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDEIVAKYQHQQNLQNLD 144 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~ 144 (168)
+...|+||++.+.+|.. ++|||+||..||..|+..+...||.||.++....+.++......++...
T Consensus 207 ~~~~c~i~~~~~~dPv~---~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~ 272 (281)
T 2c2l_A 207 DYLCGKISFELMREPCI---TPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFI 272 (281)
T ss_dssp STTBCTTTCSBCSSEEE---CSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHH
T ss_pred cccCCcCcCCHhcCCeE---CCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHH
Confidence 45689999999998876 8999999999999999875456999999998777776666555554443
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.00 E-value=1.8e-10 Score=93.17 Aligned_cols=48 Identities=25% Similarity=0.625 Sum_probs=40.5
Q ss_pred ccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCC
Q 047964 77 SKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLP 127 (168)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~ 127 (168)
...|+||++.+..+. .++|||.||..|+..|+......||+||.++..
T Consensus 332 ~~~C~ICle~~~~pv---~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKDVK---IEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCCEE---EETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCCCeE---EeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 468999999876653 389999999999999998545789999998854
No 56
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.97 E-value=2e-10 Score=70.28 Aligned_cols=49 Identities=20% Similarity=0.476 Sum_probs=38.5
Q ss_pred cccccccccccccCCcceEeeCCCCc-chHHHHHHHHHhCCCCCCCCCCcCC
Q 047964 76 ESKDCAVCLSDFEDGEMVRKLNCKHT-FHRDCLDKWLQEYLATCPLCRTKVL 126 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~~CP~Cr~~~~ 126 (168)
++..|+||++...+... ..+||||. +|..|+..|...+ ..||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~~~~-~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCI-VHGKTGHLMACFTCAKKLKKRN-KPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEE-EETTEEEEEECHHHHHHHHHTT-CCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEEE-ECCCCCChhhHHHHHHHHHHcC-CcCCCcCcchh
Confidence 46789999998655432 11399999 8999999999764 78999999874
No 57
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.96 E-value=5.2e-11 Score=84.08 Aligned_cols=49 Identities=18% Similarity=0.389 Sum_probs=41.9
Q ss_pred CcccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCC
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~ 126 (168)
++...|+||++.+..+.. ++|||.||..|+..|+..+...||.||.++.
T Consensus 29 ~~~~~C~IC~~~~~~pv~---~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQ---AQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CGGGBCTTTCSBCSSEEE---CTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CcCcCCCCCChhhcCcEE---CCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 556799999999988754 7999999999999999866458999999763
No 58
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.95 E-value=1.5e-10 Score=68.95 Aligned_cols=45 Identities=24% Similarity=0.566 Sum_probs=38.0
Q ss_pred CcccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCC
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~ 126 (168)
.+...|+||++.+..+.. ++|||.||..|+..| ...||+||+.+.
T Consensus 4 ~~~~~C~IC~~~~~~p~~---l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKL---LPCLHTLCSGCLEAS----GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCCSC---STTSCCSBTTTCSSS----SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCeEE---cCCCCcccHHHHccC----CCCCCcCCcEee
Confidence 446789999999998765 899999999999773 367999999874
No 59
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.94 E-value=2.4e-10 Score=69.65 Aligned_cols=50 Identities=22% Similarity=0.493 Sum_probs=39.0
Q ss_pred CcccccccccccccCCcceEeeCCCCc-chHHHHHHHHHhCCCCCCCCCCcCC
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCKHT-FHRDCLDKWLQEYLATCPLCRTKVL 126 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~~CP~Cr~~~~ 126 (168)
+....|+||++...++.. ..+||||. +|..|+..|...+ ..||+||+++.
T Consensus 5 ~~~~~C~IC~~~~~~~~~-~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNI-IHGRTGHLVTCFHCARRLKKAG-ASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEEE-EETTEEEEEECHHHHHHHHHTT-CBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCeEE-EecCCCCHhHHHHHHHHHHHhC-CcCCCcCchhh
Confidence 346789999997655432 12399998 9999999998764 78999999874
No 60
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.93 E-value=7.6e-10 Score=80.85 Aligned_cols=66 Identities=11% Similarity=0.186 Sum_probs=53.1
Q ss_pred CcccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCCchHHhhHHhHhhhhhh
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDEIVAKYQHQQNLQNL 143 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~ 143 (168)
.+...||||.+.+.+|.. ++|||+|+..||..|+..+...||.|+.++....+.++.......+..
T Consensus 104 p~~f~CPI~~elm~DPV~---~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~ 169 (179)
T 2f42_A 104 PDYLCGKISFELMREPCI---TPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAF 169 (179)
T ss_dssp CGGGBCTTTCSBCSSEEE---CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred cHhhcccCccccCCCCeE---CCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHH
Confidence 456789999999998876 799999999999999987434799999999877777766655554443
No 61
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.87 E-value=3.4e-10 Score=71.16 Aligned_cols=43 Identities=26% Similarity=0.628 Sum_probs=36.3
Q ss_pred cccccccccccccCCcceEeeCCCCc-chHHHHHHHHHhCCCCCCCCCCcCC
Q 047964 76 ESKDCAVCLSDFEDGEMVRKLNCKHT-FHRDCLDKWLQEYLATCPLCRTKVL 126 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~~CP~Cr~~~~ 126 (168)
++..|+||++.+.++.. ++|||. ||..|+..| ..||+||..+.
T Consensus 23 ~~~~C~iC~~~~~~~~~---~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVF---VPCGHLVTCKQCAEAV-----DKCPMCYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSBCCEEE---ETTCCBCCCHHHHTTC-----SBCTTTCCBCS
T ss_pred cCCCCCCCCCCCCCEEE---cCCCChhHHHHhhhcC-----ccCCCcCcCcc
Confidence 45689999998766543 799999 999999887 57999999874
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.75 E-value=4.2e-09 Score=69.02 Aligned_cols=56 Identities=25% Similarity=0.634 Sum_probs=43.5
Q ss_pred cccccccccccccCCcceEeeCCCCcchHHHHHHHHHhC-------CCCCCC--CCCc--CCCchHH
Q 047964 76 ESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEY-------LATCPL--CRTK--VLPDEIV 131 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~-------~~~CP~--Cr~~--~~~~~~~ 131 (168)
+...|+||++.+..+..+...+|||.||..|+..++... ...||. |+.. +.++.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~ 70 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIE 70 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHH
Confidence 456899999998877765545899999999999998631 126999 9998 6655444
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=3.7e-09 Score=66.47 Aligned_cols=44 Identities=25% Similarity=0.618 Sum_probs=35.9
Q ss_pred cccccccccccccCCcceEeeCCCCc-chHHHHHHHHHhCCCCCCCCCCcCCC
Q 047964 76 ESKDCAVCLSDFEDGEMVRKLNCKHT-FHRDCLDKWLQEYLATCPLCRTKVLP 127 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~~CP~Cr~~~~~ 127 (168)
++..|+||++.+.++.. ++|||. ||..|+.. ...||+||..+..
T Consensus 24 ~~~~C~IC~~~~~~~~~---~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVF---VPCGHLVTCKQCAEA-----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCBCC---SSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCEEE---ecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence 35689999999776654 799999 99999953 3689999998854
No 64
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.73 E-value=5.2e-09 Score=83.04 Aligned_cols=52 Identities=29% Similarity=0.777 Sum_probs=39.0
Q ss_pred CcccccccccccccCCcce-E----eeCCCCcchHHHHHHHHHhCC----------CCCCCCCCcCC
Q 047964 75 SESKDCAVCLSDFEDGEMV-R----KLNCKHTFHRDCLDKWLQEYL----------ATCPLCRTKVL 126 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~-~----~~~C~H~f~~~Ci~~w~~~~~----------~~CP~Cr~~~~ 126 (168)
++..+|+||++.+.....+ . -.+|+|.||..|+.+|+.... ..||.||+++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 4567999999988762221 1 137999999999999997421 25999999874
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=9.2e-09 Score=63.52 Aligned_cols=45 Identities=36% Similarity=0.763 Sum_probs=35.7
Q ss_pred CcccccccccccccCCcceEeeCCCCc-chHHHHHHHHHhCCCCCCCCCCcCCC
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCKHT-FHRDCLDKWLQEYLATCPLCRTKVLP 127 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~~CP~Cr~~~~~ 127 (168)
.+...|+||++...+. ..+||||. ||..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNW---VLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCC---EETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCE---EEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 4567899999985543 34799999 99999973 3689999998854
No 66
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.62 E-value=8.3e-09 Score=79.18 Aligned_cols=61 Identities=25% Similarity=0.508 Sum_probs=47.3
Q ss_pred cccccccccccccCCcceEeeCCCCcchHHHHHHHHHhC-CCCCCC--CCCcCCCchHHhhHHhHh
Q 047964 76 ESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEY-LATCPL--CRTKVLPDEIVAKYQHQQ 138 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~-~~~CP~--Cr~~~~~~~~~~~~~~~~ 138 (168)
....||||++.+..|.. .+.|||.||..||..|+..+ ...||. |+..+...++.++.....
T Consensus 180 ~el~CPIcl~~f~DPVt--s~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~ 243 (267)
T 3htk_C 180 IELTCPITCKPYEAPLI--SRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMEL 243 (267)
T ss_dssp CCSBCTTTSSBCSSEEE--ESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHH
T ss_pred eeeECcCccCcccCCee--eCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHH
Confidence 34579999999988865 24899999999999999753 246999 999887666665544433
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.59 E-value=7.7e-09 Score=65.75 Aligned_cols=44 Identities=30% Similarity=0.661 Sum_probs=35.3
Q ss_pred cccccccccccccCCcceEeeCCCCc-chHHHHHHHHHhCCCCCCCCCCcCCC
Q 047964 76 ESKDCAVCLSDFEDGEMVRKLNCKHT-FHRDCLDKWLQEYLATCPLCRTKVLP 127 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~~CP~Cr~~~~~ 127 (168)
++..|+||++...++. .+||||. ||..|+..| ..||+||..+..
T Consensus 17 ~~~~C~IC~~~~~~~v---~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEINST---FCPCGHTVCCESCAAQL-----QSCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBCCEE---EETTCBCCBCHHHHTTC-----SBCTTTCCBCCE
T ss_pred CCCEeEEeCcccCcEE---EECCCCHHHHHHHHHhc-----CcCCCCCchhhC
Confidence 3568999999865543 4799999 999999865 489999998853
No 68
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.58 E-value=7.3e-08 Score=57.97 Aligned_cols=49 Identities=22% Similarity=0.567 Sum_probs=36.9
Q ss_pred CcccccccccccccCCcceEeeCCC--C---cchHHHHHHHHHh-CCCCCCCCCCcCC
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCK--H---TFHRDCLDKWLQE-YLATCPLCRTKVL 126 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~--H---~f~~~Ci~~w~~~-~~~~CP~Cr~~~~ 126 (168)
++...|.||++....+ + .+||. + .||..|+..|+.. +...||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~~--l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNE--R-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCC--C-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCc--e-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4567899999874433 2 36764 4 8999999999974 3467999999874
No 69
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.43 E-value=2.2e-07 Score=60.78 Aligned_cols=46 Identities=28% Similarity=0.452 Sum_probs=36.9
Q ss_pred ccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCC
Q 047964 79 DCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126 (168)
Q Consensus 79 ~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~ 126 (168)
.|++|--++. ...+.+||+|.||++|+..|.++..+.||.|+.++.
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 4777766543 344567999999999999999876678999999884
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.40 E-value=3.3e-08 Score=79.21 Aligned_cols=43 Identities=26% Similarity=0.712 Sum_probs=36.4
Q ss_pred cccccccccccccCCcceEeeCCCCc-chHHHHHHHHHhCCCCCCCCCCcCC
Q 047964 76 ESKDCAVCLSDFEDGEMVRKLNCKHT-FHRDCLDKWLQEYLATCPLCRTKVL 126 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~~CP~Cr~~~~ 126 (168)
++..|+||++.+..+.. +||||. ||..|+..| ..||+||.++.
T Consensus 294 ~~~~C~IC~~~~~~~v~---lpCgH~~fC~~C~~~~-----~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVF---IPCGHLVVCQECAPSL-----RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCCEEE---ETTCCEEECTTTGGGC-----SBCTTTCCBCC
T ss_pred CCCCCCccCCcCCceEE---cCCCChhHhHHHHhcC-----CcCCCCCCCcc
Confidence 45689999999776544 799999 999999877 57999999874
No 71
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.33 E-value=1.8e-07 Score=56.40 Aligned_cols=52 Identities=15% Similarity=0.284 Sum_probs=42.6
Q ss_pred ccccccccccccCCcceEee-CCCCcchHHHHHHHHHhCCCCCCCCCCcCCCchHHh
Q 047964 77 SKDCAVCLSDFEDGEMVRKL-NCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDEIVA 132 (168)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~~~~~~ 132 (168)
...|+||.+.+.+|.. + ++||.|...||..|+..+ ..||..+.++..+++.+
T Consensus 3 ~~~CpIs~~~m~dPV~---~~~sG~~yer~~I~~~l~~~-~~cP~t~~~L~~~~Lip 55 (61)
T 2bay_A 3 HMLCAISGKVPRRPVL---SPKSRTIFEKSLLEQYVKDT-GNDPITNEPLSIEEIVE 55 (61)
T ss_dssp -CCCTTTCSCCSSEEE---ETTTTEEEEHHHHHHHHHHH-SBCTTTCCBCCGGGCEE
T ss_pred eEEecCCCCCCCCCEE---eCCCCcEEcHHHHHHHHHhC-CCCcCCcCCCChhhcEE
Confidence 3579999999998754 6 899999999999999875 56999999986655433
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.70 E-value=2.2e-05 Score=59.67 Aligned_cols=51 Identities=25% Similarity=0.541 Sum_probs=40.2
Q ss_pred cccccccccccccCCcceEeeCCCCcchHHHHHHHHHhC-CCCCCCCCCcCCCc
Q 047964 76 ESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEY-LATCPLCRTKVLPD 128 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~-~~~CP~Cr~~~~~~ 128 (168)
....|.||.+....+... ..|+|.||..|+..|++.+ ...||.|+..+..+
T Consensus 179 ~i~~C~iC~~iv~~g~~C--~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSC--ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSCEEC--SSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCCccc--CccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 367899999988876542 3599999999999999754 24799999987543
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.45 E-value=0.0045 Score=39.79 Aligned_cols=48 Identities=21% Similarity=0.576 Sum_probs=36.0
Q ss_pred CcccccccccccccCCcceEeeCC-CCcchHHHHHHHHHhCCCCCCCCCCcCCCc
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNC-KHTFHRDCLDKWLQEYLATCPLCRTKVLPD 128 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C-~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~~ 128 (168)
.+...|..|+-... .. +.| .|..|..|+...+..+ ..||+|..++...
T Consensus 26 ~G~~nCKsCWf~~k--~L---V~C~dHYLCl~CLtlmL~~S-drCpIC~~pLPtk 74 (99)
T 2ko5_A 26 LGPQFCKSCWFENK--GL---VECNNHYLCLNCLTLLLSVS-NRCPICKMPLPTK 74 (99)
T ss_dssp SCCCCCCSSCSCCS--SE---EECSSCEEEHHHHHHTCSSS-SEETTTTEECCCC
T ss_pred cCcccChhhccccC--Ce---eeecchhhHHHHHHHHHhhc-cCCcccCCcCCcc
Confidence 35678999996532 22 467 6889999999888764 7899999988543
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.32 E-value=0.025 Score=36.61 Aligned_cols=34 Identities=18% Similarity=0.443 Sum_probs=25.0
Q ss_pred ccccccccccccCCcceEeeCCCCcchHHHHHHH
Q 047964 77 SKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKW 110 (168)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w 110 (168)
+..|+||.+.+..+....-+.|+|.||..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 4689999976433333333689999999999973
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.21 E-value=0.033 Score=33.54 Aligned_cols=49 Identities=22% Similarity=0.420 Sum_probs=33.7
Q ss_pred CCcccccccccccccCCcceEeeCCCCcchHHHHHHHHHhC---CCCCCCCCCcC
Q 047964 74 PSESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEY---LATCPLCRTKV 125 (168)
Q Consensus 74 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~---~~~CP~Cr~~~ 125 (168)
+.....|.+|.+. +..+.--.|...||..|+...+... ...||.|+...
T Consensus 9 ~~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 9 LAPGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CCTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 3456689999754 4433223788999999998776532 23799997654
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=93.24 E-value=0.072 Score=33.49 Aligned_cols=37 Identities=22% Similarity=0.530 Sum_probs=24.1
Q ss_pred CCCcccccccccccccCCcceEeeCCCCcchHHHHHHH
Q 047964 73 SPSESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKW 110 (168)
Q Consensus 73 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w 110 (168)
....++.|.||-. +.......---|+.+||..|+.+.
T Consensus 11 ~~~~D~~C~VC~~-~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 11 PVVNDEMCDVCEV-WTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCSCCCTTTCC-CCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCCcccCcccc-ccccceeccccccccccHhhcccc
Confidence 3456889999963 222332111247899999999986
No 77
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=90.87 E-value=0.58 Score=32.41 Aligned_cols=47 Identities=19% Similarity=0.521 Sum_probs=32.7
Q ss_pred CcccccccccccccCCcceEeeCCCCcchHHHHHHHHH----------hCCCCCCCCCCc
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQ----------EYLATCPLCRTK 124 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~----------~~~~~CP~Cr~~ 124 (168)
..+..|.+|.+. +..+.--.|-..||..|+.+-+. .....||.|+..
T Consensus 61 g~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 61 GMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp SCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 446789999875 44432237888999999996542 234589999754
No 78
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=86.32 E-value=0.44 Score=42.74 Aligned_cols=59 Identities=12% Similarity=0.151 Sum_probs=47.4
Q ss_pred CcccccccccccccCCcceEeeCCC-CcchHHHHHHHHHhCCCCCCCCCCcCCCchHHhhHHhH
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCK-HTFHRDCLDKWLQEYLATCPLCRTKVLPDEIVAKYQHQ 137 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~-H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~~~~~~~~~~~ 137 (168)
-+...|||-.+.+.+|.. ++.| +.+-..+|..|+..+ .+||.=|.++....+.++....
T Consensus 889 P~~F~cPIs~~lM~DPVi---lpsG~~TydR~~I~~wl~~~-~tdP~Tr~~L~~~~liPN~~Lk 948 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDPVI---LPASKMNIDRSTIKAHLLSD-STDPFNRMPLKLEDVTPNEELR 948 (968)
T ss_dssp CGGGBCTTTCSBCSSEEE---CTTTCCEEEHHHHHHHHTTC-CBCTTTCCBCCGGGCEECHHHH
T ss_pred cHHhCCcchhhHHhCCeE---cCCCCEEECHHHHHHHHhcC-CCCCCCCCCCCcccccccHHHH
Confidence 345689999999998876 7887 589999999999874 7899999999776666654433
No 79
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=83.85 E-value=1 Score=28.01 Aligned_cols=39 Identities=23% Similarity=0.396 Sum_probs=29.0
Q ss_pred CcccccccccccccCCcceEee-CCCCcchHHHHHHHHHh
Q 047964 75 SESKDCAVCLSDFEDGEMVRKL-NCKHTFHRDCLDKWLQE 113 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~w~~~ 113 (168)
.....|.+|.+.+.+...+.-. -=.|.||..|-+..++.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 3456899999999887763211 12789999999988864
No 80
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=83.72 E-value=0.41 Score=29.13 Aligned_cols=51 Identities=20% Similarity=0.414 Sum_probs=32.5
Q ss_pred CcccccccccccccCCcceEeeCCCCcchHHHHHHHHHh---CCCCCCCCCCcC
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQE---YLATCPLCRTKV 125 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~---~~~~CP~Cr~~~ 125 (168)
.+...|.+|.........+.--.|...||..|+..-... ....||.|+..+
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 345679999876543233222368888999998754332 234699996544
No 81
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=82.87 E-value=1.5 Score=29.82 Aligned_cols=47 Identities=19% Similarity=0.540 Sum_probs=30.9
Q ss_pred CcccccccccccccCCcceEeeCCCCcchHHHHHHHH----------HhCCCCCCCCCCc
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWL----------QEYLATCPLCRTK 124 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~----------~~~~~~CP~Cr~~ 124 (168)
..+..|.+|-+. +..+---.|-..||..|+.+-+ ......|+.|+..
T Consensus 55 g~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 55 GMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 345679999864 3332112678899999999752 1234589999653
No 82
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=81.77 E-value=0.38 Score=34.75 Aligned_cols=51 Identities=22% Similarity=0.475 Sum_probs=34.4
Q ss_pred ccccccccccccCCc----ceEeeCCCCcchHHHHHH------HHH----hCCCCCCCCCCcCCC
Q 047964 77 SKDCAVCLSDFEDGE----MVRKLNCKHTFHRDCLDK------WLQ----EYLATCPLCRTKVLP 127 (168)
Q Consensus 77 ~~~C~IC~~~~~~~~----~~~~~~C~H~f~~~Ci~~------w~~----~~~~~CP~Cr~~~~~ 127 (168)
+..|+||...+..+. .+.--.|...||..|..- -+. .....||.|+..-.+
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 356999999888765 332236889999999642 111 014689999987544
No 83
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=81.49 E-value=0.53 Score=26.30 Aligned_cols=45 Identities=33% Similarity=0.620 Sum_probs=27.7
Q ss_pred ccccccccccCCcceEeeCCCCcchHHHHHHHHHh---CCCCCCCCCC
Q 047964 79 DCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQE---YLATCPLCRT 123 (168)
Q Consensus 79 ~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~---~~~~CP~Cr~ 123 (168)
.|.+|...-..+..+.--.|...||..|+.+=+.. +...||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 47888765333333222368889999999653332 2236999965
No 84
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=80.49 E-value=0.24 Score=36.34 Aligned_cols=48 Identities=27% Similarity=0.498 Sum_probs=31.9
Q ss_pred CcccccccccccccCCcceEeeCCCCcchHHHHHHHHHh---CCCCCCCCCCcC
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQE---YLATCPLCRTKV 125 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~---~~~~CP~Cr~~~ 125 (168)
..+..|.+|... +..+.--.|...||..|+.+-+.. +...||.|+..-
T Consensus 5 ~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC---EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC---CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 346789999854 333222268889999998765532 234799998754
No 85
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=80.31 E-value=0.52 Score=27.56 Aligned_cols=47 Identities=28% Similarity=0.653 Sum_probs=30.7
Q ss_pred CcccccccccccccCCcceEeeCCCCcchHHHHHHHHHh---CCCCCCCCCCc
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQE---YLATCPLCRTK 124 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~---~~~~CP~Cr~~ 124 (168)
..+..|.+|... +..+.--.|...||..|+..-+.. ....||.|+..
T Consensus 9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 346789999863 333222368889999999864432 22369999653
No 86
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=79.57 E-value=1 Score=26.26 Aligned_cols=43 Identities=26% Similarity=0.585 Sum_probs=28.8
Q ss_pred cccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCC
Q 047964 78 KDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLC 121 (168)
Q Consensus 78 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~C 121 (168)
..|-.|...+......+-..|++.||.+|=.- .......||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~f-iHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVF-VHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHT-TTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHH-HHhhccCCcCC
Confidence 45988988875443222347999999999532 23334579988
No 87
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=78.95 E-value=0.35 Score=34.73 Aligned_cols=47 Identities=30% Similarity=0.557 Sum_probs=31.9
Q ss_pred cccccccccccccCCcceEeeCCCCcchHHHHHHHHHh---CCCCCCCCCCcC
Q 047964 76 ESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQE---YLATCPLCRTKV 125 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~---~~~~CP~Cr~~~ 125 (168)
.++.|.+|... +..+.--.|...||..|+.+-+.. +...||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 45679999854 443322368888999998765542 234799998754
No 88
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=77.83 E-value=2.5 Score=27.66 Aligned_cols=47 Identities=21% Similarity=0.485 Sum_probs=28.8
Q ss_pred cccccccccccc------cCCcceEeeCCCCcchHHHHHH------HHHhCCCCCCCCC
Q 047964 76 ESKDCAVCLSDF------EDGEMVRKLNCKHTFHRDCLDK------WLQEYLATCPLCR 122 (168)
Q Consensus 76 ~~~~C~IC~~~~------~~~~~~~~~~C~H~f~~~Ci~~------w~~~~~~~CP~Cr 122 (168)
....|.+|...- ..+..+.-..|+..||..|+.. ........||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 356799998652 1122322237899999999952 2333445677775
No 89
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=74.40 E-value=0.62 Score=30.54 Aligned_cols=48 Identities=29% Similarity=0.483 Sum_probs=30.5
Q ss_pred CcccccccccccccCCcceEeeCCCCcchHHHHHHHHHh---CCCCCCCCC
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQE---YLATCPLCR 122 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~---~~~~CP~Cr 122 (168)
.++..|.+|.+.-.....+.-..|+..||..|+...... ....||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 456789999876332222322478999999999876532 223566664
No 90
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=74.05 E-value=7.4 Score=24.57 Aligned_cols=51 Identities=22% Similarity=0.433 Sum_probs=36.0
Q ss_pred cccccccccccccCCc----ceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCC
Q 047964 76 ESKDCAVCLSDFEDGE----MVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~----~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~ 126 (168)
....|.||=+..-... .+.-..|+--.|..|.+.-.+...+.||.|.+...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4579999998753221 11112567668999998777777678999999875
No 91
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=72.95 E-value=3.4 Score=25.21 Aligned_cols=48 Identities=21% Similarity=0.470 Sum_probs=30.2
Q ss_pred cccccccccccc-CCcceEeeCCCCcchHHHHHHHHH----hCCCCCCCCCCcC
Q 047964 77 SKDCAVCLSDFE-DGEMVRKLNCKHTFHRDCLDKWLQ----EYLATCPLCRTKV 125 (168)
Q Consensus 77 ~~~C~IC~~~~~-~~~~~~~~~C~H~f~~~Ci~~w~~----~~~~~CP~Cr~~~ 125 (168)
...| +|..... ....+.--.|...||..|+.---. .....||.|+...
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 4456 8988764 233333236888899999852221 1235799998764
No 92
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=71.24 E-value=2.1 Score=27.47 Aligned_cols=48 Identities=25% Similarity=0.437 Sum_probs=30.5
Q ss_pred ccccccccccccCCcceEeeCCCCcchHHHHHHHHHh--CCCCCCCCCCcC
Q 047964 77 SKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQE--YLATCPLCRTKV 125 (168)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--~~~~CP~Cr~~~ 125 (168)
...| ||......+..+.--.|...||..|+..-... ....||.|+..-
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~~ 77 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPRN 77 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSSC
T ss_pred CEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCCC
Confidence 3467 78776555554333378889999998643221 123799997543
No 93
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=71.22 E-value=0.53 Score=27.53 Aligned_cols=48 Identities=29% Similarity=0.573 Sum_probs=30.7
Q ss_pred CcccccccccccccCCcceEeeCCCCcchHHHHHHHHHh---CCCCCCCCCCcC
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQE---YLATCPLCRTKV 125 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~---~~~~CP~Cr~~~ 125 (168)
..+..|.+|... +..+.--.|...||..|+.+-+.. ....||.|+...
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 346679999863 333222268888999999754332 223699997653
No 94
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=69.29 E-value=3.3 Score=28.87 Aligned_cols=48 Identities=21% Similarity=0.342 Sum_probs=29.1
Q ss_pred CcccccccccccccCC--cceEeeCCCCcchHHHHHHHHHh-CCCCCCCCCC
Q 047964 75 SESKDCAVCLSDFEDG--EMVRKLNCKHTFHRDCLDKWLQE-YLATCPLCRT 123 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~--~~~~~~~C~H~f~~~Ci~~w~~~-~~~~CP~Cr~ 123 (168)
.++..|.+|..+|..- ....-..|+|.+|..|-. |... ....|-+|+.
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 3567999999986432 222224799999999963 2211 1124666644
No 95
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=67.96 E-value=4.4 Score=32.42 Aligned_cols=55 Identities=18% Similarity=0.382 Sum_probs=35.7
Q ss_pred ccccccccccccCCcceEeeCCCCc--chHHHHHHHHH-hCCCCCCCCCCcCCCchHHhh
Q 047964 77 SKDCAVCLSDFEDGEMVRKLNCKHT--FHRDCLDKWLQ-EYLATCPLCRTKVLPDEIVAK 133 (168)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~C~H~--f~~~Ci~~w~~-~~~~~CP~Cr~~~~~~~~~~~ 133 (168)
...||+-...+..|.. ...|.|. |-..-+..... .....||+|...+..+.+.-.
T Consensus 249 SL~CPlS~~ri~~PvR--g~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID 306 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSK--SINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAIS 306 (371)
T ss_dssp ESBCTTTSSBCSSEEE--ETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEB
T ss_pred eecCCCccccccccCc--CCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEc
Confidence 3579987777666543 4689998 54444444333 334579999998876665444
No 96
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=66.82 E-value=0.96 Score=28.64 Aligned_cols=47 Identities=32% Similarity=0.618 Sum_probs=31.4
Q ss_pred CcccccccccccccCCcceEeeCCCCcchHHHHHHHHHh---CCCCCCCCCCc
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQE---YLATCPLCRTK 124 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~---~~~~CP~Cr~~ 124 (168)
..+..|.+|... +..+.--.|...||..|+.+=+.. ....||.|+..
T Consensus 23 ~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 456789999864 333222267788999999765532 22369999764
No 97
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=66.12 E-value=4.4 Score=32.30 Aligned_cols=56 Identities=18% Similarity=0.296 Sum_probs=36.7
Q ss_pred ccccccccccccCCcceEeeCCCCc--chHHHHHHHHH-hCCCCCCCCCCcCCCchHHhhH
Q 047964 77 SKDCAVCLSDFEDGEMVRKLNCKHT--FHRDCLDKWLQ-EYLATCPLCRTKVLPDEIVAKY 134 (168)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~C~H~--f~~~Ci~~w~~-~~~~~CP~Cr~~~~~~~~~~~~ 134 (168)
...||+-...+..|. +...|.|. |-..-+..+.. .....||.|.+.+..+.+.-..
T Consensus 215 SL~CPlS~~ri~~P~--Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~ 273 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPC--RAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDG 273 (360)
T ss_dssp ESBCTTTCSBCSSEE--EETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBH
T ss_pred eeeCCCccceeccCC--cCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcH
Confidence 347998877776654 34689998 55544444433 3345799999998766655443
No 98
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=65.58 E-value=0.79 Score=33.13 Aligned_cols=46 Identities=33% Similarity=0.613 Sum_probs=30.1
Q ss_pred ccccccccccccCCcceEeeCCCCcchHHHHHHHHHh---CCCCCCCCCCcC
Q 047964 77 SKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQE---YLATCPLCRTKV 125 (168)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~---~~~~CP~Cr~~~ 125 (168)
+..|.+|... +..+.--.|...||..|+.+=+.. +...||.|+..-
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 4679999864 333222367788999999754432 223699998653
No 99
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=64.97 E-value=5.6 Score=23.42 Aligned_cols=34 Identities=24% Similarity=0.559 Sum_probs=22.6
Q ss_pred CcccccccccccccCCcceE-ee-CCCCcchHHHHH
Q 047964 75 SESKDCAVCLSDFEDGEMVR-KL-NCKHTFHRDCLD 108 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~-~~-~C~H~f~~~Ci~ 108 (168)
.....|++|..++....... -- .|...||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 34568999999876554322 23 688889999964
No 100
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=64.37 E-value=6.8 Score=24.49 Aligned_cols=51 Identities=18% Similarity=0.358 Sum_probs=31.0
Q ss_pred Cccccccccccccc-CC-cceEeeCCCCcchHHHHHHHHH-hCCCCCCCCCCcC
Q 047964 75 SESKDCAVCLSDFE-DG-EMVRKLNCKHTFHRDCLDKWLQ-EYLATCPLCRTKV 125 (168)
Q Consensus 75 ~~~~~C~IC~~~~~-~~-~~~~~~~C~H~f~~~Ci~~w~~-~~~~~CP~Cr~~~ 125 (168)
.++..|.+|...-. .+ ..+.--.|.-.||..|+..-.. .....||.|....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 45678999986531 11 2211126888899999874321 2234688886544
No 101
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=62.58 E-value=2.7 Score=24.57 Aligned_cols=50 Identities=22% Similarity=0.521 Sum_probs=30.8
Q ss_pred CcccccccccccccC--CcceEeeCCCCcchHHHHHHHHH------hCCCCCCCCCCc
Q 047964 75 SESKDCAVCLSDFED--GEMVRKLNCKHTFHRDCLDKWLQ------EYLATCPLCRTK 124 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~--~~~~~~~~C~H~f~~~Ci~~w~~------~~~~~CP~Cr~~ 124 (168)
.++..|.+|...... ...+.--.|...||..|+..-+. .....||.|+..
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 456789999876432 22221127888999999875321 233468888543
No 102
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=62.32 E-value=2.7 Score=24.44 Aligned_cols=49 Identities=22% Similarity=0.460 Sum_probs=30.8
Q ss_pred CcccccccccccccCCc-ceEeeCCCCcchHHHHHHHHH----hCCCCCCCCCC
Q 047964 75 SESKDCAVCLSDFEDGE-MVRKLNCKHTFHRDCLDKWLQ----EYLATCPLCRT 123 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~-~~~~~~C~H~f~~~Ci~~w~~----~~~~~CP~Cr~ 123 (168)
++...|++|...+.... .+.--.|...||..|+.--.. .....||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 45678999998875333 322236888899999753221 12346888864
No 103
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.65 E-value=0.26 Score=28.30 Aligned_cols=45 Identities=31% Similarity=0.727 Sum_probs=27.9
Q ss_pred CcccccccccccccCCcceEeeCCCCcchHHHHHHHHHh---CCCCCCCCC
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQE---YLATCPLCR 122 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~---~~~~CP~Cr 122 (168)
..+..|.+|... +..+.--.|...||..|+.+-+.. ....||.|+
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 456789999874 333222368888999998753321 122477664
No 104
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=60.76 E-value=9.1 Score=25.55 Aligned_cols=32 Identities=19% Similarity=0.446 Sum_probs=21.9
Q ss_pred ccccccccccccCCcce-EeeCCCCcchHHHHH
Q 047964 77 SKDCAVCLSDFEDGEMV-RKLNCKHTFHRDCLD 108 (168)
Q Consensus 77 ~~~C~IC~~~~~~~~~~-~~~~C~H~f~~~Ci~ 108 (168)
...|.+|...|..-..- ---.||++||..|..
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 45899999987643210 012799999999864
No 105
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=59.68 E-value=2.7 Score=26.72 Aligned_cols=46 Identities=33% Similarity=0.590 Sum_probs=27.3
Q ss_pred cccccccccccccCCcceEeeC--CC-CcchHHHHHHHHHh---CCCCCCCCCCcC
Q 047964 76 ESKDCAVCLSDFEDGEMVRKLN--CK-HTFHRDCLDKWLQE---YLATCPLCRTKV 125 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~--C~-H~f~~~Ci~~w~~~---~~~~CP~Cr~~~ 125 (168)
+...| +|..... +..+.--. |. ..||..|+. +.. .+..||.|+..-
T Consensus 35 e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 34567 9987643 33321113 54 579999986 222 234799997653
No 106
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=59.45 E-value=2.6 Score=23.54 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=25.7
Q ss_pred ccccccccccCCcc-eEee-CCCCcchHHHHHHHH---HhCCCCCCCCC
Q 047964 79 DCAVCLSDFEDGEM-VRKL-NCKHTFHRDCLDKWL---QEYLATCPLCR 122 (168)
Q Consensus 79 ~C~IC~~~~~~~~~-~~~~-~C~H~f~~~Ci~~w~---~~~~~~CP~Cr 122 (168)
.|.+|..++..+.. +.-- .|...||..|+.--. ...+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 46788877654433 2222 477789999964211 12446799885
No 107
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=58.91 E-value=3.1 Score=25.00 Aligned_cols=46 Identities=33% Similarity=0.590 Sum_probs=27.4
Q ss_pred cccccccccccccCCcceEeeC--CC-CcchHHHHHHHHHh---CCCCCCCCCCcC
Q 047964 76 ESKDCAVCLSDFEDGEMVRKLN--CK-HTFHRDCLDKWLQE---YLATCPLCRTKV 125 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~--C~-H~f~~~Ci~~w~~~---~~~~CP~Cr~~~ 125 (168)
+...| +|..... +..+.--. |. ..||..|+. +.. .+..||.|+..-
T Consensus 15 ~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 45567 7987533 33321113 55 589999986 322 234799997653
No 108
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=57.17 E-value=29 Score=23.41 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=22.7
Q ss_pred CcccccccccccccC--CcceEeeCCCCcchHHHHH
Q 047964 75 SESKDCAVCLSDFED--GEMVRKLNCKHTFHRDCLD 108 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~--~~~~~~~~C~H~f~~~Ci~ 108 (168)
.+...|.+|...+.. +....-..|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 356789999998842 2222224788888888753
No 109
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=57.16 E-value=1.6 Score=30.81 Aligned_cols=47 Identities=17% Similarity=0.494 Sum_probs=29.7
Q ss_pred cccccccccccccCCc-ceEeeCCCCcchHHHHHHHHH----hCCCCCCCCCC
Q 047964 76 ESKDCAVCLSDFEDGE-MVRKLNCKHTFHRDCLDKWLQ----EYLATCPLCRT 123 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~-~~~~~~C~H~f~~~Ci~~w~~----~~~~~CP~Cr~ 123 (168)
+...| +|........ .+.--.|...||..|+.---. .....||.|+.
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 45678 9988754332 322236888899999852211 22357999975
No 110
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=55.25 E-value=2.7 Score=21.56 Aligned_cols=11 Identities=18% Similarity=0.585 Sum_probs=5.0
Q ss_pred ccccccccccc
Q 047964 78 KDCAVCLSDFE 88 (168)
Q Consensus 78 ~~C~IC~~~~~ 88 (168)
..||+|+..+.
T Consensus 6 FiCP~C~~~l~ 16 (34)
T 3mjh_B 6 FICPQCMKSLG 16 (34)
T ss_dssp EECTTTCCEES
T ss_pred cCCcHHHHHcC
Confidence 34444444443
No 111
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=54.61 E-value=12 Score=22.33 Aligned_cols=49 Identities=18% Similarity=0.360 Sum_probs=29.3
Q ss_pred CCcccccccccccc--cCCcceEeeCCCCcchHHHHHHHHH-hCCCCCCCCC
Q 047964 74 PSESKDCAVCLSDF--EDGEMVRKLNCKHTFHRDCLDKWLQ-EYLATCPLCR 122 (168)
Q Consensus 74 ~~~~~~C~IC~~~~--~~~~~~~~~~C~H~f~~~Ci~~w~~-~~~~~CP~Cr 122 (168)
..++..|.||...- ..+..+.--.|.-.||..|+..-.. .+...||.|+
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~ 64 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCL 64 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCc
Confidence 35577899998653 2222221127888999999864321 1223577774
No 112
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=51.43 E-value=1.2 Score=27.37 Aligned_cols=45 Identities=29% Similarity=0.535 Sum_probs=25.8
Q ss_pred ccccccccccCCcceEeeCCCCcchHHHHHHHHHh---CC-CCCCCCCC
Q 047964 79 DCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQE---YL-ATCPLCRT 123 (168)
Q Consensus 79 ~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~---~~-~~CP~Cr~ 123 (168)
.|.+|...-.....+.--.|...||..|+.+-+.. .. ..||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 46666654322222211268888999999865432 12 46888875
No 113
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=51.28 E-value=6.4 Score=23.37 Aligned_cols=32 Identities=22% Similarity=0.491 Sum_probs=23.7
Q ss_pred CcccccccccccccCCcceEeeCC-CCcchHHHHHHH
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNC-KHTFHRDCLDKW 110 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C-~H~f~~~Ci~~w 110 (168)
++..-|.||.++ ..++-+.| +-.||..|..+.
T Consensus 6 ee~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 456789999987 33555788 778999997654
No 114
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=51.14 E-value=14 Score=22.05 Aligned_cols=47 Identities=23% Similarity=0.448 Sum_probs=29.3
Q ss_pred ccccccccccccCCcceEeeCCCCcchHHHHHHHH--------HhCCCCCCCCCCc
Q 047964 77 SKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWL--------QEYLATCPLCRTK 124 (168)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~--------~~~~~~CP~Cr~~ 124 (168)
...| +|.........+.--.|...||..|+.--. ......||.|+..
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 3456 898876544443333788899999974211 1234679998654
No 115
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=50.86 E-value=7.2 Score=22.64 Aligned_cols=34 Identities=24% Similarity=0.557 Sum_probs=20.5
Q ss_pred CCcccccccccc-cccCCcceEeeCCCCcchHHHH
Q 047964 74 PSESKDCAVCLS-DFEDGEMVRKLNCKHTFHRDCL 107 (168)
Q Consensus 74 ~~~~~~C~IC~~-~~~~~~~~~~~~C~H~f~~~Ci 107 (168)
..+...|.||.. .|.++..-.-..|.-.||..|-
T Consensus 6 ~~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCG 40 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCG 40 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSE
T ss_pred cCCcchhhhhccceeccCCCccccccCCeeecccC
Confidence 355679999987 4555544332355666666553
No 116
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=49.11 E-value=3.3 Score=27.20 Aligned_cols=45 Identities=27% Similarity=0.551 Sum_probs=26.2
Q ss_pred cccccccccccC-------CcceEeeCCCCcchHHHHHHH------HHhCCCCCCCCC
Q 047964 78 KDCAVCLSDFED-------GEMVRKLNCKHTFHRDCLDKW------LQEYLATCPLCR 122 (168)
Q Consensus 78 ~~C~IC~~~~~~-------~~~~~~~~C~H~f~~~Ci~~w------~~~~~~~CP~Cr 122 (168)
+.|.+|...-.. +..+.-..|+..||..|+... .......||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 468888765311 122222378899999998643 233345666663
No 117
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.99 E-value=2 Score=26.32 Aligned_cols=46 Identities=28% Similarity=0.540 Sum_probs=28.4
Q ss_pred cccccccccccCCcceEeeCCCCcchHHHHHHHHHh---C-CCCCCCCCC
Q 047964 78 KDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQE---Y-LATCPLCRT 123 (168)
Q Consensus 78 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~---~-~~~CP~Cr~ 123 (168)
..|.+|...-..+..+.--.|...||..|+.+=+.. + ...||.|+.
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 367888764333333222278889999999753331 1 346888864
No 118
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=48.78 E-value=55 Score=23.90 Aligned_cols=33 Identities=18% Similarity=0.438 Sum_probs=22.5
Q ss_pred cccccccccccccCCcce-EeeCCCCcchHHHHH
Q 047964 76 ESKDCAVCLSDFEDGEMV-RKLNCKHTFHRDCLD 108 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~-~~~~C~H~f~~~Ci~ 108 (168)
++..|.+|...|..-..- ---.||.+||..|..
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~ 196 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSS 196 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCC
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcC
Confidence 456899999888643210 012789999988864
No 119
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=48.21 E-value=1.6 Score=32.49 Aligned_cols=45 Identities=29% Similarity=0.544 Sum_probs=24.5
Q ss_pred ccccccccccCCcceEeeCCCCcchHHHHHHHHHh---C-CCCCCCCCC
Q 047964 79 DCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQE---Y-LATCPLCRT 123 (168)
Q Consensus 79 ~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~---~-~~~CP~Cr~ 123 (168)
.|.+|...-..+..+.--.|...||..|+.+=+.. + ...||.|+.
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 57777654222333222268889999999854432 2 246999965
No 120
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=48.04 E-value=1.9 Score=25.83 Aligned_cols=45 Identities=29% Similarity=0.544 Sum_probs=26.2
Q ss_pred ccccccccccCCcceEeeCCCCcchHHHHHHHHHh---C-CCCCCCCCC
Q 047964 79 DCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQE---Y-LATCPLCRT 123 (168)
Q Consensus 79 ~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~---~-~~~CP~Cr~ 123 (168)
.|.+|...-..+..+.--.|...||..|+.+=+.. + ...||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 45677653222332211268889999999854432 1 346999875
No 121
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=47.87 E-value=3.9 Score=23.73 Aligned_cols=16 Identities=19% Similarity=0.532 Sum_probs=10.3
Q ss_pred HhCCCCCCCCCCcCCC
Q 047964 112 QEYLATCPLCRTKVLP 127 (168)
Q Consensus 112 ~~~~~~CP~Cr~~~~~ 127 (168)
..+.+.||.|+..+..
T Consensus 3 ~~~~k~CP~C~~~Iek 18 (60)
T 1wd2_A 3 AANTKECPKCHVTIEK 18 (60)
T ss_dssp CCCCCCCTTTCCCCSS
T ss_pred cccceECcCCCCeeEe
Confidence 3344678888877743
No 122
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=45.22 E-value=8.4 Score=18.30 Aligned_cols=15 Identities=27% Similarity=0.755 Sum_probs=8.8
Q ss_pred CCCCCCCcCCCchHH
Q 047964 117 TCPLCRTKVLPDEIV 131 (168)
Q Consensus 117 ~CP~Cr~~~~~~~~~ 131 (168)
.||.|.+..+..++.
T Consensus 8 qcpvcqq~mpaahin 22 (29)
T 3vhs_A 8 QCPVCQQMMPAAHIN 22 (29)
T ss_dssp ECTTTCCEEEGGGHH
T ss_pred eChHHHHhCcHHHHH
Confidence 477777665444443
No 123
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.87 E-value=15 Score=21.62 Aligned_cols=40 Identities=23% Similarity=0.516 Sum_probs=28.8
Q ss_pred ccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCC
Q 047964 77 SKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLP 127 (168)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~ 127 (168)
...|+.|-+.+.....+ ..-+..+|..| ..|..|+.++..
T Consensus 9 ~~~C~~C~~~I~~~~~v--~a~~~~~H~~C---------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKV--SSLGKDWHKFC---------LKCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEE--EETTEEEETTT---------CBCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEE--EECCeEeeCCC---------CCCCCCCCccCC
Confidence 56899999988765543 34566788766 468999888754
No 124
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=42.55 E-value=8.4 Score=22.52 Aligned_cols=46 Identities=33% Similarity=0.661 Sum_probs=29.4
Q ss_pred CcccccccccccccCCcceEeeCCCCcchHHHHHHHHHh---CCCCCCCCCC
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQE---YLATCPLCRT 123 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~---~~~~CP~Cr~ 123 (168)
..+..|.+|... +..+.--.|...||..|+.+-+.. ....||.|..
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 456789999864 333222368888999998753321 2235888854
No 125
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=42.25 E-value=8.6 Score=22.71 Aligned_cols=11 Identities=18% Similarity=0.603 Sum_probs=5.7
Q ss_pred ccccccccccC
Q 047964 79 DCAVCLSDFED 89 (168)
Q Consensus 79 ~C~IC~~~~~~ 89 (168)
.|..|...+..
T Consensus 29 ~C~~C~~~L~~ 39 (76)
T 1iml_A 29 KCEKCGKTLTS 39 (76)
T ss_dssp BCTTTCCBCCT
T ss_pred CccccCccCCC
Confidence 45555555444
No 126
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=41.50 E-value=28 Score=21.06 Aligned_cols=41 Identities=20% Similarity=0.365 Sum_probs=28.7
Q ss_pred CcccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCC
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLP 127 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~ 127 (168)
.....|.-|-+.+.. ..+ ..-+..||..| ..|-.|...+..
T Consensus 23 ~~~~~C~~C~~~I~~-~~~--~a~~~~~H~~C---------F~C~~C~~~L~~ 63 (89)
T 1x64_A 23 QRMPLCDKCGSGIVG-AVV--KARDKYRHPEC---------FVCADCNLNLKQ 63 (89)
T ss_dssp CSCCBCTTTCCBCCS-CCE--ESSSCEECTTT---------CCCSSSCCCTTT
T ss_pred CcCCCcccCCCEecc-cEE--EECCceECccC---------CEecCCCCCCCC
Confidence 345689999988775 222 34567788776 468899888754
No 127
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=41.45 E-value=13 Score=22.76 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=22.7
Q ss_pred cccccccccccccCCcceE-eeCCCCcchHHHHH
Q 047964 76 ESKDCAVCLSDFEDGEMVR-KLNCKHTFHRDCLD 108 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~-~~~C~H~f~~~Ci~ 108 (168)
+...|.+|...|..-..-- --.||.+||..|..
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 53 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSR 53 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhC
Confidence 4568999999876443200 02799999999864
No 128
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=41.43 E-value=14 Score=22.62 Aligned_cols=33 Identities=27% Similarity=0.586 Sum_probs=22.5
Q ss_pred cccccccccccccCCcceE-eeCCCCcchHHHHH
Q 047964 76 ESKDCAVCLSDFEDGEMVR-KLNCKHTFHRDCLD 108 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~-~~~C~H~f~~~Ci~ 108 (168)
+...|.+|...|..-..-- --.||.+||..|..
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 51 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSS 51 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGC
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhC
Confidence 3468999999886432100 02799999999964
No 129
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.15 E-value=5.5 Score=25.14 Aligned_cols=49 Identities=31% Similarity=0.487 Sum_probs=30.1
Q ss_pred CcccccccccccccCCcceEeeCCCCcchHHHHHHHHHh---CCCCCCCCCC
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQE---YLATCPLCRT 123 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~---~~~~CP~Cr~ 123 (168)
.++..|.+|...-.....+.--.|...||..|+.+=+.. ....||.|+.
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 345689999876433333222268888999998743321 2235888853
No 130
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=40.83 E-value=13 Score=22.08 Aligned_cols=32 Identities=19% Similarity=0.367 Sum_probs=21.5
Q ss_pred ccccccccccccCCcceE-eeCCCCcchHHHHH
Q 047964 77 SKDCAVCLSDFEDGEMVR-KLNCKHTFHRDCLD 108 (168)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~-~~~C~H~f~~~Ci~ 108 (168)
+..|.+|...|..-..-- --.||.+||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 358999998876432100 02689999998853
No 131
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.79 E-value=23 Score=21.25 Aligned_cols=41 Identities=29% Similarity=0.576 Sum_probs=28.4
Q ss_pred cccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCC
Q 047964 76 ESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLP 127 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~ 127 (168)
....|..|-..+.....+ ..-+..||..| ..|-.|...+..
T Consensus 14 ~~~~C~~C~~~I~~~e~v--~a~~~~wH~~C---------F~C~~C~~~L~~ 54 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERL--CVNGHFFHRSC---------FRCHTCEATLWP 54 (82)
T ss_dssp SSCBCSSSCCBCCTTTBC--CBTTBCCBTTT---------CBCSSSCCBCCT
T ss_pred CCCCCcccCCCcccceEE--EECCCeeCCCc---------CEEcCCCCCcCC
Confidence 456899999887655443 23466788777 468888887754
No 132
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=39.79 E-value=15 Score=22.90 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=22.9
Q ss_pred CcccccccccccccCCcceE-eeCCCCcchHHHHH
Q 047964 75 SESKDCAVCLSDFEDGEMVR-KLNCKHTFHRDCLD 108 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~-~~~C~H~f~~~Ci~ 108 (168)
.+...|.+|...|..-..-- --.||.+||..|..
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 41 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLS 41 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSC
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcC
Confidence 34568999999876442200 02789999998864
No 133
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.71 E-value=23 Score=21.03 Aligned_cols=40 Identities=15% Similarity=0.408 Sum_probs=27.2
Q ss_pred cccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCC
Q 047964 76 ESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLP 127 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~ 127 (168)
....|+-|-..+.. ..+ ..-+..||..| ..|..|..++..
T Consensus 14 ~~~~C~~C~~~I~~-~~v--~a~~~~~H~~C---------F~C~~C~~~L~~ 53 (79)
T 2cor_A 14 GKYICQKCHAIIDE-QPL--IFKNDPYHPDH---------FNCANCGKELTA 53 (79)
T ss_dssp CCCBCTTTCCBCCS-CCC--CCSSSCCCTTT---------SBCSSSCCBCCT
T ss_pred CCCCCccCCCEecc-eEE--EECcceeCCCC---------CEeCCCCCccCC
Confidence 35689999988773 222 34566677666 468899888754
No 134
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=38.83 E-value=4.3 Score=26.46 Aligned_cols=25 Identities=20% Similarity=0.647 Sum_probs=15.4
Q ss_pred eCCCCcchHHHHHHHHHhCCCCCCCCCCcCC
Q 047964 96 LNCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126 (168)
Q Consensus 96 ~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~ 126 (168)
..||+.|. ..+ .....||.|++...
T Consensus 71 ~~CG~~F~----~~~--~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 71 RKCGFVFK----AEI--NIPSRCPKCKSEWI 95 (105)
T ss_dssp TTTCCBCC----CCS--SCCSSCSSSCCCCB
T ss_pred hhCcCeec----ccC--CCCCCCcCCCCCcc
Confidence 47898881 111 12247999998753
No 135
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=38.06 E-value=13 Score=23.20 Aligned_cols=33 Identities=18% Similarity=0.430 Sum_probs=22.5
Q ss_pred ccccccccccccCCcc-eEeeCCCCcchHHHHHH
Q 047964 77 SKDCAVCLSDFEDGEM-VRKLNCKHTFHRDCLDK 109 (168)
Q Consensus 77 ~~~C~IC~~~~~~~~~-~~~~~C~H~f~~~Ci~~ 109 (168)
...|.+|...|..-.. .---.||.+||..|...
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 4579999988764321 00127999999999654
No 136
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=37.77 E-value=14 Score=17.95 Aligned_cols=14 Identities=21% Similarity=0.562 Sum_probs=10.1
Q ss_pred CCCCCCCCcCCCch
Q 047964 116 ATCPLCRTKVLPDE 129 (168)
Q Consensus 116 ~~CP~Cr~~~~~~~ 129 (168)
..||.|+....+.+
T Consensus 4 ~~CpvCk~q~Pd~k 17 (28)
T 2jvx_A 4 FCCPKCQYQAPDMD 17 (28)
T ss_dssp EECTTSSCEESSHH
T ss_pred ccCccccccCcChH
Confidence 46999988875544
No 137
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=37.77 E-value=11 Score=27.52 Aligned_cols=33 Identities=21% Similarity=0.485 Sum_probs=21.9
Q ss_pred cccccccccccccCCcce-EeeCCCCcchHHHHH
Q 047964 76 ESKDCAVCLSDFEDGEMV-RKLNCKHTFHRDCLD 108 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~-~~~~C~H~f~~~Ci~ 108 (168)
++..|.+|...|..-..- ---.||+.||..|..
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 457899999887643210 012689999988754
No 138
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=37.01 E-value=12 Score=24.18 Aligned_cols=49 Identities=24% Similarity=0.487 Sum_probs=30.5
Q ss_pred ccccccccccccCCcceE-ee-CCCCcchHHHHHHHH---H------hCCCCCCCCCCcC
Q 047964 77 SKDCAVCLSDFEDGEMVR-KL-NCKHTFHRDCLDKWL---Q------EYLATCPLCRTKV 125 (168)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~-~~-~C~H~f~~~Ci~~w~---~------~~~~~CP~Cr~~~ 125 (168)
...|.+|..++....... -- .|...||..|+.--- + ..+..||.|+..-
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 357999999875443322 12 577889999964211 0 1234799998654
No 139
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.62 E-value=25 Score=20.14 Aligned_cols=41 Identities=22% Similarity=0.427 Sum_probs=26.6
Q ss_pred ccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCC
Q 047964 77 SKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLP 127 (168)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~ 127 (168)
...|..|-..+.....+ +..-+..||..| ..|..|..++..
T Consensus 5 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~C---------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRK-LEYGGQTWHEHC---------FLCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCE-ECSTTCCEETTT---------CBCTTTCCBTTT
T ss_pred CCCCccCCCccccCccE-EEECccccCccc---------CeECCCCCcCCC
Confidence 45788888887754222 134566788766 458888887754
No 140
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.29 E-value=20 Score=21.29 Aligned_cols=38 Identities=21% Similarity=0.398 Sum_probs=26.9
Q ss_pred cccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcC
Q 047964 76 ESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKV 125 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~ 125 (168)
....|.-|-+.+... .+ ..-+..||..| ..|-.|+..+
T Consensus 14 ~~~~C~~C~~~I~~~-~~--~a~~~~~H~~C---------F~C~~C~~~L 51 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV-FV--KLRDRHRHPEC---------YVCTDCGTNL 51 (79)
T ss_dssp CCCCCSSSCCCCCSS-CE--ECSSCEECTTT---------TSCSSSCCCH
T ss_pred CCCccccCCCCccCc-EE--EECcceeCcCc---------CeeCCCCCCC
Confidence 457899999887753 22 34567788776 4688888776
No 141
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=35.34 E-value=10 Score=23.60 Aligned_cols=49 Identities=18% Similarity=0.409 Sum_probs=30.5
Q ss_pred cccccccccccccCCcceEee--CCCCcchHHHHHHHHH-------hCCCCCCCCCCc
Q 047964 76 ESKDCAVCLSDFEDGEMVRKL--NCKHTFHRDCLDKWLQ-------EYLATCPLCRTK 124 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~--~C~H~f~~~Ci~~w~~-------~~~~~CP~Cr~~ 124 (168)
.+..|.+|...-..+....+. .|...||..|+.+-+. .....|+.|+..
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccch
Confidence 356899998753322111112 6889999999886443 223468888543
No 142
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=35.05 E-value=13 Score=21.22 Aligned_cols=45 Identities=31% Similarity=0.724 Sum_probs=28.4
Q ss_pred cccccccccccccCCcceEeeCCCCcchHHHHHHHHHh---CCCCCCCCCC
Q 047964 76 ESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQE---YLATCPLCRT 123 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~---~~~~CP~Cr~ 123 (168)
.+..|.+|... +..+.--.|...||..|+.+-+.. ....||.|+.
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 46789999874 343322368888999998753321 1235877743
No 143
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.89 E-value=18 Score=20.69 Aligned_cols=38 Identities=24% Similarity=0.643 Sum_probs=24.2
Q ss_pred ccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCC
Q 047964 77 SKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126 (168)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~ 126 (168)
...|..|-..+... . +..-+..||..| ..|..|+.++.
T Consensus 5 ~~~C~~C~~~I~~~-~--~~a~~~~~H~~C---------F~C~~C~~~L~ 42 (70)
T 2d8z_A 5 SSGCVQCKKPITTG-G--VTYREQPWHKEC---------FVCTACRKQLS 42 (70)
T ss_dssp CCBCSSSCCBCCSS-E--EESSSSEEETTT---------SBCSSSCCBCT
T ss_pred CCCCcccCCeeccc-e--EEECccccCCCC---------CccCCCCCcCC
Confidence 35688888877643 2 134566777665 35778877764
No 144
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.59 E-value=31 Score=21.01 Aligned_cols=41 Identities=24% Similarity=0.546 Sum_probs=27.7
Q ss_pred cccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCC
Q 047964 76 ESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLP 127 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~ 127 (168)
....|.-|-..+.....+ ..-+..||..| ..|-.|..++..
T Consensus 14 ~~~~C~~C~~~I~~~~~v--~a~~~~~H~~C---------F~C~~C~~~L~~ 54 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERL--LANQQVFHISC---------FRCSYCNNKLSL 54 (91)
T ss_dssp SSCBCTTTCCBCCTTSEE--ECSSSEEETTT---------CBCTTTCCBCCT
T ss_pred CCCcCccCCCccCCceeE--EECCCEECCCC---------CeeCCCCCCCCC
Confidence 356899998887755443 35566778766 357788777654
No 145
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.41 E-value=17 Score=22.27 Aligned_cols=33 Identities=21% Similarity=0.442 Sum_probs=21.7
Q ss_pred cccccccccccccCCcce-EeeCCCCcchHHHHH
Q 047964 76 ESKDCAVCLSDFEDGEMV-RKLNCKHTFHRDCLD 108 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~-~~~~C~H~f~~~Ci~ 108 (168)
+...|.+|...|..-..- ---.||.+||..|..
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 346899999987543210 002799999988853
No 146
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.17 E-value=19 Score=20.69 Aligned_cols=39 Identities=21% Similarity=0.551 Sum_probs=24.3
Q ss_pred ccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCC
Q 047964 77 SKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLP 127 (168)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~ 127 (168)
...|..|-+.+.. ..+ ..-+..||..| ..|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~-~~~--~a~~~~~H~~C---------F~C~~C~~~L~~ 43 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVI--KAMNNSWHPEC---------FRCDLCQEVLAD 43 (70)
T ss_dssp SSBCSSSCCBCCS-CCE--EETTEEECTTT---------SBCSSSCCBCSS
T ss_pred CCcCccCCCEecc-eEE--EECcccccccC---------CEeCCCCCcCCC
Confidence 4578888877663 222 23455677665 357788777754
No 147
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=33.87 E-value=38 Score=20.31 Aligned_cols=48 Identities=23% Similarity=0.387 Sum_probs=28.8
Q ss_pred cccccccccccccCCcceEee--CCCCcchHHHHHHHHHh--------CCCCCCCCCCc
Q 047964 76 ESKDCAVCLSDFEDGEMVRKL--NCKHTFHRDCLDKWLQE--------YLATCPLCRTK 124 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~--~C~H~f~~~Ci~~w~~~--------~~~~CP~Cr~~ 124 (168)
....| ||......+..+.-- .|...||..|+.---.. .+..||.|+..
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 34567 788764444443333 68889999998521111 13468888653
No 148
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=33.86 E-value=8.6 Score=30.77 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=0.0
Q ss_pred ccccccccccccCCcc-eEeeCCCCcchHHHHHHHH
Q 047964 77 SKDCAVCLSDFEDGEM-VRKLNCKHTFHRDCLDKWL 111 (168)
Q Consensus 77 ~~~C~IC~~~~~~~~~-~~~~~C~H~f~~~Ci~~w~ 111 (168)
...|..|...|..-.. .---.||++||..|.....
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp ------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 4689999988763321 0013799999999986554
No 149
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=33.18 E-value=17 Score=20.65 Aligned_cols=39 Identities=21% Similarity=0.447 Sum_probs=26.4
Q ss_pred ccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCC
Q 047964 77 SKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLP 127 (168)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~ 127 (168)
...|+.|-..+. +.. +..-+..+|..| ..|..|+.++..
T Consensus 5 ~~~C~~C~~~I~-~~~--~~a~~~~~H~~C---------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GRV--VNAMGKQWHVEH---------FVCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SCE--ECCTTSBEETTT---------CBCTTTCCBCSS
T ss_pred CCCCcccCCEec-ceE--EEECccccccCc---------CEECCCCCCCCC
Confidence 457999988877 332 134566788766 468888887753
No 150
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=31.67 E-value=14 Score=18.03 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=16.6
Q ss_pred cccccccccccCCcceEeeCCCCcchHHH
Q 047964 78 KDCAVCLSDFEDGEMVRKLNCKHTFHRDC 106 (168)
Q Consensus 78 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~C 106 (168)
+.|+.|-........+ ..-|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~--~~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKV--NCLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCC--CSSSSCCCGGG
T ss_pred CcCCccCCEEecceeE--EECCeEecccC
Confidence 4688887765544432 34466677766
No 151
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=31.43 E-value=21 Score=22.93 Aligned_cols=12 Identities=50% Similarity=1.351 Sum_probs=10.6
Q ss_pred chHHHHHHHHHh
Q 047964 102 FHRDCLDKWLQE 113 (168)
Q Consensus 102 f~~~Ci~~w~~~ 113 (168)
||..|+..|+..
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 899999999963
No 152
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=31.39 E-value=21 Score=22.88 Aligned_cols=11 Identities=64% Similarity=1.458 Sum_probs=10.3
Q ss_pred chHHHHHHHHH
Q 047964 102 FHRDCLDKWLQ 112 (168)
Q Consensus 102 f~~~Ci~~w~~ 112 (168)
||..|+..|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 89999999996
No 153
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=30.64 E-value=17 Score=24.11 Aligned_cols=45 Identities=24% Similarity=0.552 Sum_probs=26.4
Q ss_pred ccccccccccccCCcceE-eeCCCCcchHHHHHHHHHhCCCCCCCCC
Q 047964 77 SKDCAVCLSDFEDGEMVR-KLNCKHTFHRDCLDKWLQEYLATCPLCR 122 (168)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~-~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr 122 (168)
...|..|...|..-..-- --.||.+||..|....... .+.|-.|-
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~-vRVC~~C~ 64 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG-PRLCLLCQ 64 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC-ceECHHHH
Confidence 458999998876432100 1279999999996544332 24566663
No 154
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.32 E-value=38 Score=19.95 Aligned_cols=41 Identities=24% Similarity=0.542 Sum_probs=27.9
Q ss_pred ccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCC
Q 047964 77 SKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLP 127 (168)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~ 127 (168)
...|+.|-..+....... ..-+..||..| ..|-.|+.++..
T Consensus 15 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~C---------F~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNV-EYKGTVWHKDC---------FTCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEE-ECSSCEEETTT---------CCCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEE-EECcccccccc---------CchhhCCCccCC
Confidence 358999998877544321 34466788766 468889888754
No 155
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.29 E-value=35 Score=19.58 Aligned_cols=40 Identities=25% Similarity=0.559 Sum_probs=26.0
Q ss_pred ccccccccccccC--CcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCC
Q 047964 77 SKDCAVCLSDFED--GEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126 (168)
Q Consensus 77 ~~~C~IC~~~~~~--~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~ 126 (168)
...|.-|-+.+.. .... +..-+..+|..| ..|..|..++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~C---------F~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKY-ISFEERQWHNDC---------FNCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSC-EECSSCEECTTT---------CBCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcce-EEECCcccCccc---------CEeccCCCcCC
Confidence 4678899888774 2221 124567788766 46888888774
No 156
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.03 E-value=31 Score=20.10 Aligned_cols=38 Identities=21% Similarity=0.503 Sum_probs=24.2
Q ss_pred ccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCC
Q 047964 77 SKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126 (168)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~ 126 (168)
...|+-|-..+... .+ ..-+..||..| ..|..|..++.
T Consensus 5 ~~~C~~C~~~I~~~-~v--~a~~~~wH~~C---------F~C~~C~~~L~ 42 (73)
T 1wig_A 5 SSGCDSCEKYITGR-VL--EAGEKHYHPSC---------ALCVRCGQMFA 42 (73)
T ss_dssp CCSCSSSCCCCSSC-CB--CCSSCCBCTTT---------SCCSSSCCCCC
T ss_pred cCCcccCCCEecCe-eE--EeCCCCCCCCc---------CEeCCCCCCCC
Confidence 35788888776642 21 34566677666 46788877765
No 157
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.36 E-value=39 Score=19.30 Aligned_cols=40 Identities=25% Similarity=0.542 Sum_probs=21.9
Q ss_pred ccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCC
Q 047964 77 SKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126 (168)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~ 126 (168)
...|..|-..+...... ...-+..||..| ..|..|..++.
T Consensus 5 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~C---------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAG-VVALDRVFHVGC---------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCC-EECSSSEECTTT---------CBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceE-EEECCCeEcccC---------CcccccCCcCC
Confidence 35677777766542211 123355666655 35777776663
No 158
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.34 E-value=33 Score=19.90 Aligned_cols=42 Identities=21% Similarity=0.511 Sum_probs=27.2
Q ss_pred cccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCC
Q 047964 76 ESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLP 127 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~ 127 (168)
....|+-|-..+.....+. ..-+..||..| ..|..|..++..
T Consensus 10 ~~~~C~~C~~~I~~~~~~~-~a~~~~~H~~C---------F~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIV-NSNGELYHEQC---------FVCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCE-EETTEEECTTT---------CCCTTTCCCCGG
T ss_pred CCCCchhcCCccCCCceEE-EeCccEecccc---------CeECCCCCCCCC
Confidence 3568999998876433321 23466677666 468888887743
No 159
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.15 E-value=27 Score=20.84 Aligned_cols=40 Identities=20% Similarity=0.571 Sum_probs=28.0
Q ss_pred cccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCC
Q 047964 76 ESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~ 126 (168)
....|+-|-..+.....+. .-+..||..| ..|..|+.++.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~--a~~~~wH~~C---------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLL--ALDKQWHVSC---------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEE--ETTEEECTTT---------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEE--ECCccccccc---------CCcCcCCCCcC
Confidence 4568999999887555432 3456677766 46888988774
No 160
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.96 E-value=28 Score=19.96 Aligned_cols=41 Identities=20% Similarity=0.426 Sum_probs=25.4
Q ss_pred ccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCC
Q 047964 77 SKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLP 127 (168)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~ 127 (168)
...|+.|-+.+....... ..-+..||..| ..|..|..++..
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~C---------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKM-EYKGSSWHETC---------FICHRCQQPIGT 45 (72)
T ss_dssp CCCBSSSCCCCCSSSCEE-EETTEEEETTT---------TCCSSSCCCCCS
T ss_pred CCCCccCCCcccCCceEE-EECcCeecccC---------CcccccCCccCC
Confidence 357888888777543221 23455677655 457888777754
No 161
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.90 E-value=25 Score=20.02 Aligned_cols=38 Identities=26% Similarity=0.627 Sum_probs=22.8
Q ss_pred ccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCC
Q 047964 77 SKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126 (168)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~ 126 (168)
...|+-|-..+... .+ ..-+..||..| ..|..|..++.
T Consensus 5 ~~~C~~C~~~I~~~-~~--~a~~~~~H~~C---------F~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITSG-GI--TYQDQPWHADC---------FVCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCTT-CE--EETTEEECTTT---------TBCTTTCCBCT
T ss_pred cCCCcccCCEeCcc-eE--EECccccccCc---------CEECCCCCCCC
Confidence 45688887776532 22 23455666655 35777777764
No 162
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.77 E-value=26 Score=21.29 Aligned_cols=40 Identities=15% Similarity=0.418 Sum_probs=27.5
Q ss_pred cccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCC
Q 047964 76 ESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLP 127 (168)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~ 127 (168)
....|+.|-..+.. ..+ ..-+..||..| ..|..|+.++..
T Consensus 24 ~~~~C~~C~~~I~~-~~v--~a~~~~~H~~C---------F~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIRG-PFL--VALGKSWHPEE---------FNCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCCS-CEE--EETTEEECTTT---------CBCSSSCCBCSS
T ss_pred CCCCCccCCCEecc-eEE--EECCccccccC---------CccCCCCCCCCC
Confidence 35689999988753 322 34567788766 468899888754
No 163
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=28.65 E-value=41 Score=21.15 Aligned_cols=36 Identities=17% Similarity=0.358 Sum_probs=21.8
Q ss_pred CCCCCCCCc-CCCchHHhhHHhHhhhhhhhhcCCCch
Q 047964 116 ATCPLCRTK-VLPDEIVAKYQHQQNLQNLDYYGGDDE 151 (168)
Q Consensus 116 ~~CP~Cr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (168)
-+||.|... +...+-....+....+-+....|.+++
T Consensus 24 LRCpvCqnqsI~dSnA~iA~dlR~~Vre~l~~G~Sd~ 60 (90)
T 2kw0_A 24 LRCPKCQNNSIADSNSMIATDLRQKVYELMQEGKSKK 60 (90)
T ss_dssp SBCSCTTSCTTTSCCCHHHHHHHHHHHHHHHHTCCHH
T ss_pred CcCCCCCCCchhhcCcHHHHHHHHHHHHHHHcCCCHH
Confidence 579999864 444454555555556656666666544
No 164
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=27.56 E-value=21 Score=21.01 Aligned_cols=48 Identities=21% Similarity=0.486 Sum_probs=27.6
Q ss_pred CcccccccccccccCCcceEeeCCCCcchHHHHHHHHH--hCCCCCCCCCC
Q 047964 75 SESKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQ--EYLATCPLCRT 123 (168)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~--~~~~~CP~Cr~ 123 (168)
.+...| ||.........+.--.|...||..|+.---. .....||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 345578 8987655333433336888899999753211 11235777753
No 165
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.85 E-value=40 Score=19.82 Aligned_cols=37 Identities=16% Similarity=0.492 Sum_probs=24.2
Q ss_pred cccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCC
Q 047964 78 KDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126 (168)
Q Consensus 78 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~ 126 (168)
..|+.|-+.+.. ..+ ..-+..||..| ..|..|..++.
T Consensus 16 ~~C~~C~~~I~~-~~~--~a~~~~~H~~C---------F~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMTG-PFM--VAGEFKYHPEC---------FACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCCS-CCB--CCTTCCBCTTS---------CBCTTTCCBCC
T ss_pred CcCccCCCCcCc-eEE--EECCceecccc---------CCccCCCCccC
Confidence 478888887773 221 24466677655 46888888774
No 166
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=26.08 E-value=27 Score=22.34 Aligned_cols=11 Identities=27% Similarity=0.978 Sum_probs=6.3
Q ss_pred CCCCCCCcCCC
Q 047964 117 TCPLCRTKVLP 127 (168)
Q Consensus 117 ~CP~Cr~~~~~ 127 (168)
.||+|-+++.+
T Consensus 49 ~CPvCgs~l~~ 59 (112)
T 1l8d_A 49 KCPVCGRELTD 59 (112)
T ss_dssp ECTTTCCEECH
T ss_pred CCCCCCCcCCH
Confidence 46666665543
No 167
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.48 E-value=28 Score=20.61 Aligned_cols=38 Identities=34% Similarity=0.702 Sum_probs=26.0
Q ss_pred cccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCC
Q 047964 78 KDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLP 127 (168)
Q Consensus 78 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~ 127 (168)
..|+.|-..+.. ..+ ..-+..||..| ..|-.|..++..
T Consensus 16 ~~C~~C~~~I~~-~~v--~a~~~~wH~~C---------F~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIEG-EVV--SALGKTYHPDC---------FVCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCCS-CCE--EETTEEECTTT---------SSCSSSCCCCCS
T ss_pred CcCccccCEecc-ceE--EECCceeCccC---------CccccCCCCCCC
Confidence 479999988773 332 34566788766 468889888753
No 168
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.29 E-value=37 Score=19.89 Aligned_cols=38 Identities=29% Similarity=0.683 Sum_probs=25.2
Q ss_pred ccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCC
Q 047964 77 SKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126 (168)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~ 126 (168)
...|+.|-+.+... .+ ..-+..||..| ..|..|..++.
T Consensus 15 ~~~C~~C~~~I~~~-~v--~a~~~~~H~~C---------F~C~~C~~~L~ 52 (80)
T 2cuq_A 15 APRCARCSKTLTQG-GV--TYRDQPWHREC---------LVCTGCQTPLA 52 (80)
T ss_dssp SCCCTTTCCCCCSC-CE--ESSSSEECTTT---------CBCSSSCCBCT
T ss_pred CCcCCCCCCEecCc-EE--EECCchhhhhh---------CCcccCCCcCC
Confidence 35788888877653 22 34566777666 45888888774
No 169
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=24.53 E-value=56 Score=22.78 Aligned_cols=44 Identities=23% Similarity=0.516 Sum_probs=26.8
Q ss_pred ccccccccccccCCcceEee--CCCCcchHHHHHHHHHh---------CCCCCCCCCC
Q 047964 77 SKDCAVCLSDFEDGEMVRKL--NCKHTFHRDCLDKWLQE---------YLATCPLCRT 123 (168)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~--~C~H~f~~~Ci~~w~~~---------~~~~CP~Cr~ 123 (168)
+.-|.+|-+. +..+.-- +|...||..||..++.. ....|=+|..
T Consensus 79 ~~yC~wC~~G---g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 79 QSYCTICCGG---REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp BSSCTTTSCC---SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred cceeeEecCC---CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 3467777643 2221111 58889999999987632 2336888854
No 170
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.50 E-value=29 Score=20.25 Aligned_cols=40 Identities=20% Similarity=0.545 Sum_probs=26.2
Q ss_pred ccccccccccccC--CcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCC
Q 047964 77 SKDCAVCLSDFED--GEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126 (168)
Q Consensus 77 ~~~C~IC~~~~~~--~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~ 126 (168)
...|+.|-..+.. .... +..-+..||..| ..|..|..++.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~-~~a~~~~wH~~C---------F~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKF-ICFQDSQWHSEC---------FNCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCE-EEETTEEEEGGG---------CBCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCcee-EEECCcccCccc---------CChhhCCCcCC
Confidence 3578899888774 2221 134566788777 46888888774
No 171
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=24.49 E-value=4 Score=25.01 Aligned_cols=14 Identities=29% Similarity=0.956 Sum_probs=12.4
Q ss_pred CCCCcchHHHHHHH
Q 047964 97 NCKHTFHRDCLDKW 110 (168)
Q Consensus 97 ~C~H~f~~~Ci~~w 110 (168)
.|++.||..|-..|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 58999999999887
No 172
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=24.09 E-value=60 Score=26.04 Aligned_cols=45 Identities=20% Similarity=0.493 Sum_probs=28.0
Q ss_pred ccccccccccccCCcceEee--CCCCcchHHHHHHHHH---------hCCCCCCCCCCc
Q 047964 77 SKDCAVCLSDFEDGEMVRKL--NCKHTFHRDCLDKWLQ---------EYLATCPLCRTK 124 (168)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~--~C~H~f~~~Ci~~w~~---------~~~~~CP~Cr~~ 124 (168)
+..|.+|-+. +..+.-- .|...||..||..++. .....|=+|...
T Consensus 93 ~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 93 QSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp BCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred cccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 3456666543 2222112 6888999999998872 133578888644
No 173
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=23.97 E-value=2.8 Score=19.40 Aligned_cols=11 Identities=36% Similarity=0.972 Sum_probs=6.8
Q ss_pred chHHHHHHHHH
Q 047964 102 FHRDCLDKWLQ 112 (168)
Q Consensus 102 f~~~Ci~~w~~ 112 (168)
||..|.++|+.
T Consensus 7 fcetcskpwlv 17 (26)
T 1loi_A 7 FCETCSKPWLV 17 (26)
T ss_dssp HHHTSSCTTGG
T ss_pred HHHhcCCchhh
Confidence 66666666653
No 174
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.89 E-value=55 Score=21.10 Aligned_cols=51 Identities=10% Similarity=0.122 Sum_probs=32.5
Q ss_pred cccccccccccC-CcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCCchH
Q 047964 78 KDCAVCLSDFED-GEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLPDEI 130 (168)
Q Consensus 78 ~~C~IC~~~~~~-~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~~~~ 130 (168)
..|..|...+.. +... ...=+..+|..|....+.. +..|..|..++.+..+
T Consensus 33 F~C~~C~~~L~~~~~~~-~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSS-YTKSGMILCRNDYIRLFGN-SGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HCCSSSCCCTTTSEECC-EEETTEEECHHHHHHHHCC-CCSSSCSSCCSCCEES
T ss_pred CCcCCCCCcccccCCeE-EEECCeeecHHHHHHHcCC-CCccccCCCCcCchhe
Confidence 367778777652 1111 1344667899998876642 2379999999976554
No 175
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=22.87 E-value=54 Score=20.26 Aligned_cols=36 Identities=14% Similarity=0.301 Sum_probs=21.0
Q ss_pred CCCCCCCCc-CCCchHHhhHHhHhhhhhhhhcCCCch
Q 047964 116 ATCPLCRTK-VLPDEIVAKYQHQQNLQNLDYYGGDDE 151 (168)
Q Consensus 116 ~~CP~Cr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (168)
-+||.|... +...+-....+....+-+....|.+++
T Consensus 27 LRCp~Cqnqsi~dSna~iA~dlR~~V~~~l~~G~sd~ 63 (84)
T 2hl7_A 27 LRCPKCQNQDIADSNAPIAADLRKQIYGQLQQGKSDG 63 (84)
T ss_dssp EECTTSSSCBTTTCCSHHHHHHHHHHHHHHHHTCCHH
T ss_pred CcCCCCCCCchhhcCcHHHHHHHHHHHHHHHcCCCHH
Confidence 469999863 344444445555555555555566544
No 176
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=22.37 E-value=15 Score=21.92 Aligned_cols=40 Identities=28% Similarity=0.559 Sum_probs=24.0
Q ss_pred ccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCC
Q 047964 77 SKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLP 127 (168)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~ 127 (168)
...|+.|-..+.....+ ..-+..||..| ..|..|..++..
T Consensus 7 ~~~C~~C~~~I~~~~~~--~a~~~~~H~~C---------F~C~~C~~~L~~ 46 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEV--QCDGRSFHRCC---------FLCMVCRKNLDS 46 (81)
T ss_dssp -CBCSSSCCBCSSTTEE--EETTEEEESSS---------EECSSSCCEECS
T ss_pred CCcCcCcCccccCceeE--EeCCccccccc---------CccCCCCCCCCC
Confidence 45788888877655432 23455666555 347777776643
No 177
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.53 E-value=38 Score=19.99 Aligned_cols=38 Identities=24% Similarity=0.592 Sum_probs=24.6
Q ss_pred ccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCC
Q 047964 77 SKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVL 126 (168)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~ 126 (168)
...|+-|-..+... .+ ..-+..||..| ..|..|..++.
T Consensus 15 ~~~C~~C~~~I~~~-~~--~a~~~~~H~~C---------F~C~~C~~~L~ 52 (81)
T 2dlo_A 15 LEKCATCSQPILDR-IL--RAMGKAYHPGC---------FTCVVCHRGLD 52 (81)
T ss_dssp CCBCTTTCCBCCSC-CE--EETTEEECTTT---------CBCSSSCCBCT
T ss_pred CCccccCCCeecce-eE--EECCccccHHh---------cCcccCCCccC
Confidence 45788888877632 22 23456677655 46888888774
No 178
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=21.37 E-value=44 Score=18.89 Aligned_cols=41 Identities=22% Similarity=0.523 Sum_probs=27.5
Q ss_pred ccccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCC
Q 047964 77 SKDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLP 127 (168)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~ 127 (168)
...|.-|...+.....+. ..-+..+|..| ..|-.|..++..
T Consensus 11 ~~~C~~C~~~i~~~e~~~-~~~~~~~H~~C---------F~C~~C~~~L~~ 51 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIV-NSNGELYHEQC---------FVCAQCFQQFPE 51 (72)
T ss_dssp TCBCTTTCCBCCTTCEEE-EETTEEEETTT---------SSCTTTCCCCGG
T ss_pred CccchhcCccccCCceEE-EeCcCeeCcCC---------CcccCCCCCCCC
Confidence 568999998877655432 23456677766 368888887743
No 179
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.16 E-value=37 Score=19.91 Aligned_cols=38 Identities=18% Similarity=0.445 Sum_probs=24.6
Q ss_pred cccccccccccCCcceEeeCCCCcchHHHHHHHHHhCCCCCCCCCCcCCC
Q 047964 78 KDCAVCLSDFEDGEMVRKLNCKHTFHRDCLDKWLQEYLATCPLCRTKVLP 127 (168)
Q Consensus 78 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~~CP~Cr~~~~~ 127 (168)
..|+.|-..+... .+ ..-+..||..| ..|..|+.++..
T Consensus 16 ~~C~~C~~~I~~~-~v--~a~~~~~H~~C---------F~C~~C~~~L~~ 53 (80)
T 1x3h_A 16 PKCGGCNRPVLEN-YL--SAMDTVWHPEC---------FVCGDCFTSFST 53 (80)
T ss_dssp CBCTTTCCBCCSS-CE--EETTEEECTTT---------CBCSSSCCBSCS
T ss_pred CccccCCCeecce-eE--EECCCeEecCc---------CChhhCCCCCCC
Confidence 5788888877642 22 23455677655 458888887754
No 180
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=20.33 E-value=41 Score=20.76 Aligned_cols=32 Identities=28% Similarity=0.582 Sum_probs=20.4
Q ss_pred ccccccccccccCCcceEe--eCCCCcchHHHHHH
Q 047964 77 SKDCAVCLSDFEDGEMVRK--LNCKHTFHRDCLDK 109 (168)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~--~~C~H~f~~~Ci~~ 109 (168)
...|.||...- .+..+.- -.|...||..|...
T Consensus 17 ~l~C~iC~~~~-~GAciqC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 17 KLTCYLCKQKG-VGASIQCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CCCBTTTTBCC-SSCEEECSCTTTCCEEEHHHHHH
T ss_pred cCCCcCCCCCC-CcEeEecCCCCCCCcCcHHHHHH
Confidence 45799996531 1333221 25888999999865
Done!