Query 047967
Match_columns 81
No_of_seqs 118 out of 1030
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 05:00:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047967.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047967hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.6 7E-16 1.5E-20 87.3 5.5 65 17-81 87-151 (160)
2 cd05022 S-100A13 S-100A13: S-1 99.6 2E-15 4.3E-20 78.5 4.6 62 20-81 6-70 (89)
3 PF13499 EF-hand_7: EF-hand do 99.6 2.6E-15 5.7E-20 73.9 3.9 59 23-81 1-63 (66)
4 cd05027 S-100B S-100B: S-100B 99.6 1.5E-14 3.3E-19 75.1 5.5 62 20-81 6-74 (88)
5 KOG0027 Calmodulin and related 99.5 1.4E-14 3E-19 81.7 5.5 62 20-81 83-144 (151)
6 KOG0027 Calmodulin and related 99.5 1.7E-13 3.7E-18 77.2 5.7 64 18-81 4-67 (151)
7 smart00027 EH Eps15 homology d 99.4 2.2E-13 4.7E-18 71.7 4.8 62 18-81 6-67 (96)
8 cd05031 S-100A10_like S-100A10 99.4 2.7E-13 5.9E-18 71.1 5.1 62 20-81 6-74 (94)
9 cd00052 EH Eps15 homology doma 99.4 2.9E-13 6.3E-18 66.5 4.3 56 24-81 1-56 (67)
10 cd05029 S-100A6 S-100A6: S-100 99.4 5.5E-13 1.2E-17 69.3 5.5 62 20-81 8-74 (88)
11 cd05025 S-100A1 S-100A1: S-100 99.4 6.1E-13 1.3E-17 69.5 5.5 62 20-81 7-75 (92)
12 cd05026 S-100Z S-100Z: S-100Z 99.4 7.5E-13 1.6E-17 69.4 5.5 62 20-81 8-76 (93)
13 COG5126 FRQ1 Ca2+-binding prot 99.4 4.8E-13 1E-17 75.9 4.8 64 17-81 15-78 (160)
14 cd00213 S-100 S-100: S-100 dom 99.4 5.8E-13 1.3E-17 69.0 4.2 63 19-81 5-74 (88)
15 cd00051 EFh EF-hand, calcium b 99.3 5.5E-12 1.2E-16 60.2 5.2 58 24-81 2-59 (63)
16 PTZ00183 centrin; Provisional 99.3 8.8E-12 1.9E-16 70.0 5.9 65 17-81 12-76 (158)
17 KOG0028 Ca2+-binding protein ( 99.3 7.8E-12 1.7E-16 70.5 5.5 64 18-81 102-165 (172)
18 PF13833 EF-hand_8: EF-hand do 99.3 2.6E-12 5.6E-17 60.9 2.9 47 35-81 1-48 (54)
19 KOG0037 Ca2+-binding protein, 99.3 9.8E-12 2.1E-16 73.0 5.2 63 19-81 121-183 (221)
20 PTZ00183 centrin; Provisional 99.3 2E-11 4.4E-16 68.5 6.1 62 20-81 88-149 (158)
21 PTZ00184 calmodulin; Provision 99.3 2E-11 4.3E-16 67.7 5.9 62 20-81 82-143 (149)
22 cd05023 S-100A11 S-100A11: S-1 99.3 2.4E-11 5.3E-16 63.2 5.5 62 20-81 7-75 (89)
23 KOG0028 Ca2+-binding protein ( 99.2 2.8E-11 6E-16 68.3 5.1 64 18-81 29-92 (172)
24 KOG0030 Myosin essential light 99.2 1.8E-11 4E-16 67.6 4.0 67 14-81 80-146 (152)
25 PTZ00184 calmodulin; Provision 99.2 3.5E-11 7.5E-16 66.8 5.0 63 19-81 8-70 (149)
26 KOG0041 Predicted Ca2+-binding 99.2 3.9E-11 8.4E-16 70.1 4.2 62 20-81 97-158 (244)
27 cd00252 SPARC_EC SPARC_EC; ext 99.2 1.1E-10 2.3E-15 63.5 5.5 60 18-81 44-103 (116)
28 KOG0030 Myosin essential light 99.1 7.5E-11 1.6E-15 65.2 4.3 66 16-81 5-72 (152)
29 cd05030 calgranulins Calgranul 99.1 2E-10 4.4E-15 59.6 4.4 62 20-81 6-74 (88)
30 PF14658 EF-hand_9: EF-hand do 99.1 1.6E-10 3.5E-15 56.7 3.5 56 26-81 2-59 (66)
31 KOG0034 Ca2+/calmodulin-depend 99.1 6.3E-10 1.4E-14 64.8 6.3 61 21-81 103-170 (187)
32 KOG0031 Myosin regulatory ligh 99.0 7.6E-10 1.6E-14 62.3 5.2 68 14-81 93-160 (171)
33 KOG0036 Predicted mitochondria 99.0 7.8E-10 1.7E-14 70.3 5.6 62 19-80 79-140 (463)
34 PF00036 EF-hand_1: EF hand; 99.0 6.1E-10 1.3E-14 46.5 3.5 29 23-51 1-29 (29)
35 PF13405 EF-hand_6: EF-hand do 98.9 1.7E-09 3.7E-14 45.8 3.5 30 23-52 1-31 (31)
36 KOG0031 Myosin regulatory ligh 98.9 3.7E-09 7.9E-14 59.5 4.9 59 18-80 28-86 (171)
37 PF12763 EF-hand_4: Cytoskelet 98.8 9.2E-09 2E-13 54.9 4.3 62 17-81 5-66 (104)
38 PLN02964 phosphatidylserine de 98.8 1.8E-08 3.9E-13 67.7 6.2 58 23-80 180-237 (644)
39 cd05024 S-100A10 S-100A10: A s 98.7 7.1E-08 1.5E-12 50.3 5.6 61 20-81 6-71 (91)
40 KOG0377 Protein serine/threoni 98.7 2.9E-08 6.3E-13 64.1 4.7 60 22-81 547-610 (631)
41 KOG0044 Ca2+ sensor (EF-Hand s 98.7 3.8E-08 8.3E-13 57.6 4.1 64 17-80 59-122 (193)
42 KOG0037 Ca2+-binding protein, 98.7 1.2E-07 2.6E-12 56.0 6.1 62 20-81 55-117 (221)
43 KOG0044 Ca2+ sensor (EF-Hand s 98.6 4.3E-08 9.4E-13 57.4 3.9 62 20-81 98-170 (193)
44 PLN02964 phosphatidylserine de 98.6 6.8E-08 1.5E-12 65.0 5.1 59 19-81 140-202 (644)
45 PF13202 EF-hand_5: EF hand; P 98.6 7.5E-08 1.6E-12 38.8 2.9 25 24-48 1-25 (25)
46 KOG0036 Predicted mitochondria 98.6 1.7E-07 3.6E-12 60.0 5.4 63 19-81 11-74 (463)
47 KOG0040 Ca2+-binding actin-bun 98.4 6E-07 1.3E-11 64.7 4.3 67 15-81 2246-2319(2399)
48 PRK12309 transaldolase/EF-hand 98.4 8.5E-07 1.8E-11 56.9 4.6 52 17-81 329-380 (391)
49 PF00036 EF-hand_1: EF hand; 98.1 7E-07 1.5E-11 37.2 0.6 23 59-81 1-23 (29)
50 PF14788 EF-hand_10: EF hand; 98.1 1.8E-06 4E-11 40.3 2.0 43 38-80 1-43 (51)
51 PF10591 SPARC_Ca_bdg: Secrete 98.1 2.9E-07 6.2E-12 49.9 -1.0 58 21-80 53-110 (113)
52 KOG0038 Ca2+-binding kinase in 98.1 3.2E-06 7E-11 47.6 2.9 58 23-80 109-171 (189)
53 KOG4223 Reticulocalbin, calume 98.1 4.4E-06 9.6E-11 52.0 3.2 60 22-81 163-223 (325)
54 KOG0046 Ca2+-binding actin-bun 98.0 7.7E-06 1.7E-10 54.0 3.7 62 19-81 16-80 (627)
55 smart00054 EFh EF-hand, calciu 97.9 1.8E-05 3.8E-10 31.4 3.1 27 24-50 2-28 (29)
56 KOG4223 Reticulocalbin, calume 97.9 1E-05 2.2E-10 50.5 3.1 62 20-81 75-136 (325)
57 KOG4251 Calcium binding protei 97.9 6E-06 1.3E-10 50.3 2.0 60 21-80 100-162 (362)
58 PF13833 EF-hand_8: EF-hand do 97.8 4.4E-05 9.5E-10 35.7 3.8 32 19-50 22-53 (54)
59 KOG0034 Ca2+/calmodulin-depend 97.7 0.0001 2.2E-09 43.2 4.8 29 20-48 31-60 (187)
60 KOG4065 Uncharacterized conser 97.5 0.00025 5.3E-09 38.6 4.0 56 26-81 71-140 (144)
61 PF13499 EF-hand_7: EF-hand do 97.5 0.00021 4.6E-09 34.6 3.5 27 22-48 40-66 (66)
62 KOG1029 Endocytic adaptor prot 97.5 7.2E-05 1.6E-09 51.6 1.9 59 21-81 194-252 (1118)
63 PF13202 EF-hand_5: EF hand; P 97.4 5.1E-05 1.1E-09 30.4 0.5 21 60-80 1-21 (25)
64 PF13405 EF-hand_6: EF-hand do 97.1 0.0002 4.3E-09 29.8 0.5 22 59-80 1-22 (31)
65 cd05026 S-100Z S-100Z: S-100Z 97.0 0.0022 4.7E-08 33.5 4.5 32 20-51 51-82 (93)
66 cd05022 S-100A13 S-100A13: S-1 97.0 0.0019 4.2E-08 33.5 4.0 30 22-51 47-76 (89)
67 PF14788 EF-hand_10: EF hand; 96.9 0.0027 5.8E-08 29.7 3.6 32 20-51 19-50 (51)
68 cd05023 S-100A11 S-100A11: S-1 96.9 0.0037 8.1E-08 32.4 4.3 32 20-51 50-81 (89)
69 cd05029 S-100A6 S-100A6: S-100 96.8 0.0041 8.9E-08 32.2 4.3 32 20-51 49-80 (88)
70 cd05031 S-100A10_like S-100A10 96.7 0.0018 4E-08 33.7 2.5 34 20-53 49-82 (94)
71 cd05024 S-100A10 S-100A10: A s 96.7 0.0065 1.4E-07 31.7 4.4 34 19-52 45-78 (91)
72 cd00252 SPARC_EC SPARC_EC; ext 96.6 0.0045 9.7E-08 33.7 3.8 29 21-49 79-107 (116)
73 KOG3555 Ca2+-binding proteogly 96.6 0.0031 6.6E-08 40.3 3.6 57 21-81 249-305 (434)
74 cd05025 S-100A1 S-100A1: S-100 96.6 0.0063 1.4E-07 31.5 4.2 32 20-51 50-81 (92)
75 cd05030 calgranulins Calgranul 96.6 0.0056 1.2E-07 31.6 4.0 31 21-51 50-80 (88)
76 KOG1955 Ral-GTPase effector RA 96.5 0.0035 7.6E-08 41.9 3.3 62 18-81 227-288 (737)
77 cd00052 EH Eps15 homology doma 96.5 0.0046 1E-07 29.6 3.0 32 20-51 31-62 (67)
78 cd00051 EFh EF-hand, calcium b 96.4 0.0087 1.9E-07 27.5 3.7 31 18-48 32-62 (63)
79 PF09279 EF-hand_like: Phospho 96.4 0.0035 7.5E-08 31.8 2.3 57 23-80 1-63 (83)
80 KOG0035 Ca2+-binding actin-bun 96.4 0.0052 1.1E-07 43.3 3.8 64 17-80 742-810 (890)
81 smart00027 EH Eps15 homology d 96.4 0.0074 1.6E-07 31.5 3.6 39 20-58 42-85 (96)
82 KOG2243 Ca2+ release channel ( 96.4 0.0031 6.6E-08 46.9 2.6 53 28-81 4063-4115(5019)
83 cd05027 S-100B S-100B: S-100B 96.3 0.014 3E-07 30.2 4.3 32 20-51 49-80 (88)
84 KOG0042 Glycerol-3-phosphate d 96.3 0.0036 7.7E-08 42.4 2.5 63 18-80 589-651 (680)
85 cd00213 S-100 S-100: S-100 dom 96.0 0.022 4.7E-07 29.1 4.0 32 20-51 49-80 (88)
86 PF12763 EF-hand_4: Cytoskelet 95.8 0.016 3.4E-07 31.0 3.2 33 18-50 39-71 (104)
87 KOG4666 Predicted phosphate ac 95.5 0.012 2.5E-07 37.6 2.2 58 21-80 295-353 (412)
88 PF14658 EF-hand_9: EF-hand do 95.5 0.052 1.1E-06 26.7 4.0 33 18-50 31-64 (66)
89 KOG4578 Uncharacterized conser 95.5 0.0034 7.3E-08 39.9 -0.2 66 14-81 325-393 (421)
90 KOG0169 Phosphoinositide-speci 95.3 0.018 3.9E-07 40.0 2.8 61 20-80 134-194 (746)
91 KOG0998 Synaptic vesicle prote 95.3 0.011 2.3E-07 41.9 1.8 63 17-81 278-340 (847)
92 PF05042 Caleosin: Caleosin re 95.3 0.066 1.4E-06 31.2 4.6 36 20-55 5-40 (174)
93 KOG4666 Predicted phosphate ac 95.0 0.034 7.5E-07 35.5 3.2 57 21-77 258-315 (412)
94 PRK12309 transaldolase/EF-hand 95.0 0.044 9.6E-07 35.7 3.7 27 24-50 359-385 (391)
95 KOG0377 Protein serine/threoni 94.7 0.074 1.6E-06 35.4 4.2 30 21-50 463-492 (631)
96 KOG2562 Protein phosphatase 2 94.6 0.039 8.4E-07 36.6 2.7 61 20-80 349-418 (493)
97 KOG2643 Ca2+ binding protein, 94.5 0.0065 1.4E-07 39.9 -0.8 47 32-80 209-255 (489)
98 KOG4251 Calcium binding protei 94.5 0.049 1.1E-06 33.7 2.8 57 23-79 282-338 (362)
99 KOG2643 Ca2+ binding protein, 94.4 0.0051 1.1E-07 40.3 -1.4 46 36-81 402-448 (489)
100 PF05517 p25-alpha: p25-alpha 93.6 0.22 4.7E-06 28.4 4.3 57 25-81 5-64 (154)
101 KOG4347 GTPase-activating prot 93.5 0.18 3.9E-06 34.9 4.3 58 20-78 553-610 (671)
102 KOG1707 Predicted Ras related/ 92.6 0.25 5.5E-06 33.9 3.9 36 17-52 310-345 (625)
103 KOG2871 Uncharacterized conser 92.3 0.32 7E-06 31.8 4.0 39 20-58 307-345 (449)
104 PF08726 EFhand_Ca_insen: Ca2+ 92.1 0.21 4.6E-06 24.8 2.5 29 20-49 4-32 (69)
105 KOG2562 Protein phosphatase 2 91.8 0.44 9.5E-06 31.9 4.3 55 25-80 142-196 (493)
106 PF10591 SPARC_Ca_bdg: Secrete 91.4 0.29 6.2E-06 26.5 2.7 25 23-47 89-113 (113)
107 KOG0751 Mitochondrial aspartat 91.2 0.67 1.4E-05 31.6 4.7 31 21-51 107-137 (694)
108 KOG1955 Ral-GTPase effector RA 90.7 0.39 8.5E-06 32.6 3.3 35 16-50 259-293 (737)
109 KOG1029 Endocytic adaptor prot 90.0 0.96 2.1E-05 32.5 4.7 56 23-80 14-71 (1118)
110 PF05042 Caleosin: Caleosin re 89.6 1.1 2.3E-05 26.3 4.1 56 21-77 95-157 (174)
111 KOG3866 DNA-binding protein of 88.3 0.41 8.8E-06 30.7 2.0 56 26-81 248-319 (442)
112 KOG0038 Ca2+-binding kinase in 88.1 0.7 1.5E-05 26.5 2.7 52 26-77 75-127 (189)
113 PF08976 DUF1880: Domain of un 88.0 0.1 2.2E-06 28.5 -0.6 28 54-81 3-30 (118)
114 COG3763 Uncharacterized protei 87.7 2.3 4.9E-05 21.2 4.9 42 26-68 27-68 (71)
115 KOG0040 Ca2+-binding actin-bun 87.4 2.9 6.3E-05 32.5 5.9 55 21-76 2295-2351(2399)
116 KOG0751 Mitochondrial aspartat 87.3 0.74 1.6E-05 31.4 2.8 58 22-79 179-237 (694)
117 KOG3449 60S acidic ribosomal p 87.2 3.3 7.1E-05 22.5 5.3 45 24-68 3-47 (112)
118 PF03672 UPF0154: Uncharacteri 86.7 2.5 5.5E-05 20.7 4.0 33 36-68 29-61 (64)
119 PRK00523 hypothetical protein; 86.7 2.7 5.9E-05 21.0 4.7 41 26-67 28-68 (72)
120 KOG1707 Predicted Ras related/ 86.4 2.9 6.3E-05 29.1 5.2 49 18-66 191-240 (625)
121 PF08461 HTH_12: Ribonuclease 86.4 1.6 3.4E-05 21.3 3.1 37 35-71 10-46 (66)
122 PF09069 EF-hand_3: EF-hand; 86.3 2.5 5.3E-05 22.1 3.9 57 21-80 2-69 (90)
123 KOG0998 Synaptic vesicle prote 86.0 1.5 3.3E-05 31.6 3.9 63 17-81 6-68 (847)
124 PF00404 Dockerin_1: Dockerin 84.4 1.7 3.6E-05 16.5 2.4 17 32-48 1-17 (21)
125 PF11116 DUF2624: Protein of u 83.7 4.4 9.6E-05 21.0 4.1 32 37-68 13-44 (85)
126 KOG4004 Matricellular protein 83.4 0.28 6E-06 29.5 -0.4 51 28-80 193-244 (259)
127 PRK01844 hypothetical protein; 83.2 4.3 9.3E-05 20.3 4.6 41 26-67 27-67 (72)
128 PTZ00373 60S Acidic ribosomal 82.7 5.9 0.00013 21.6 5.5 43 26-68 7-49 (112)
129 PLN02228 Phosphoinositide phos 79.2 13 0.00028 25.9 6.1 65 14-80 16-86 (567)
130 PF01885 PTS_2-RNA: RNA 2'-pho 78.9 5.4 0.00012 23.5 3.9 38 32-69 26-63 (186)
131 PF07879 PHB_acc_N: PHB/PHA ac 78.9 5.4 0.00012 19.5 3.2 40 30-69 11-60 (64)
132 cd05833 Ribosomal_P2 Ribosomal 76.9 9.7 0.00021 20.6 5.5 43 26-68 5-47 (109)
133 KOG1954 Endocytosis/signaling 76.5 2.8 6E-05 27.9 2.4 55 23-80 445-499 (532)
134 PRK00819 RNA 2'-phosphotransfe 75.4 10 0.00023 22.3 4.4 37 33-69 28-64 (179)
135 PF07308 DUF1456: Protein of u 74.3 8.9 0.00019 18.9 3.6 26 42-67 17-42 (68)
136 TIGR01639 P_fal_TIGR01639 Plas 73.7 8.6 0.00019 18.4 3.9 31 37-67 8-38 (61)
137 PF09068 EF-hand_2: EF hand; 73.6 4.5 9.7E-05 22.4 2.5 28 24-51 99-126 (127)
138 PF01023 S_100: S-100/ICaBP ty 72.9 7.4 0.00016 17.4 3.6 30 21-50 5-36 (44)
139 PLN02223 phosphoinositide phos 72.0 20 0.00044 24.9 5.6 53 14-67 8-65 (537)
140 PLN02222 phosphoinositide phos 71.8 17 0.00037 25.4 5.3 59 20-80 23-84 (581)
141 PF03979 Sigma70_r1_1: Sigma-7 70.6 5.8 0.00012 20.1 2.3 46 21-70 6-51 (82)
142 PLN02230 phosphoinositide phos 70.6 35 0.00075 24.1 6.6 53 14-67 21-76 (598)
143 KOG4578 Uncharacterized conser 70.5 3.1 6.6E-05 27.1 1.5 28 23-50 371-398 (421)
144 TIGR01848 PHA_reg_PhaR polyhyd 70.0 11 0.00025 20.3 3.4 42 30-71 11-62 (107)
145 PF09336 Vps4_C: Vps4 C termin 69.8 11 0.00023 18.2 3.0 26 38-63 29-54 (62)
146 PLN00138 large subunit ribosom 68.7 17 0.00037 19.8 5.5 41 28-68 7-47 (113)
147 COG1460 Uncharacterized protei 67.3 12 0.00026 20.5 3.2 28 40-67 81-108 (114)
148 cd04411 Ribosomal_P1_P2_L12p R 67.0 18 0.00039 19.4 5.8 29 39-67 17-45 (105)
149 KOG0506 Glutaminase (contains 65.8 15 0.00033 25.2 4.0 41 27-67 91-131 (622)
150 PLN02952 phosphoinositide phos 64.8 42 0.00091 23.7 6.0 47 20-67 36-84 (599)
151 PRK14981 DNA-directed RNA poly 64.6 21 0.00045 19.3 3.9 28 40-67 80-107 (112)
152 KOG2301 Voltage-gated Ca2+ cha 63.4 12 0.00026 29.2 3.5 41 15-55 1410-1450(1592)
153 cd00086 homeodomain Homeodomai 62.7 14 0.0003 16.7 5.6 42 18-66 9-50 (59)
154 smart00513 SAP Putative DNA-bi 60.4 13 0.00028 15.5 2.6 19 38-56 3-21 (35)
155 PF02037 SAP: SAP domain; Int 59.9 12 0.00026 15.7 2.0 19 38-56 3-21 (35)
156 PF10281 Ish1: Putative stress 56.4 16 0.00036 15.5 2.6 17 40-56 5-21 (38)
157 KOG0039 Ferric reductase, NADH 56.4 39 0.00085 23.9 4.8 62 17-79 13-82 (646)
158 PF09494 Slx4: Slx4 endonuclea 55.6 23 0.0005 17.0 3.7 28 38-65 24-55 (64)
159 KOG1265 Phospholipase C [Lipid 55.4 63 0.0014 24.4 5.7 59 22-80 221-293 (1189)
160 COG2818 Tag 3-methyladenine DN 54.9 14 0.0003 22.0 2.2 36 21-56 54-89 (188)
161 KOG0041 Predicted Ca2+-binding 53.6 29 0.00063 21.2 3.4 34 18-51 131-164 (244)
162 PF01325 Fe_dep_repress: Iron 53.5 25 0.00054 16.7 4.1 53 18-79 4-56 (60)
163 PF12486 DUF3702: ImpA domain 53.1 31 0.00067 19.7 3.4 31 21-51 68-98 (148)
164 PF07128 DUF1380: Protein of u 52.9 36 0.00078 19.3 3.5 32 39-70 27-58 (139)
165 TIGR02675 tape_meas_nterm tape 52.6 29 0.00063 17.2 4.1 40 35-80 27-75 (75)
166 COG4103 Uncharacterized protei 52.4 31 0.00066 19.8 3.2 52 25-78 33-86 (148)
167 PF01316 Arg_repressor: Argini 51.5 30 0.00066 17.1 3.8 30 38-67 19-48 (70)
168 PF13829 DUF4191: Domain of un 50.6 58 0.0012 20.1 4.4 35 33-67 162-196 (224)
169 PRK09462 fur ferric uptake reg 49.7 45 0.00098 18.6 5.0 33 35-67 30-62 (148)
170 PLN02952 phosphoinositide phos 49.5 34 0.00073 24.2 3.7 45 35-80 13-59 (599)
171 COG1859 KptA RNA:NAD 2'-phosph 47.5 58 0.0013 19.9 4.0 36 33-68 54-89 (211)
172 PF04433 SWIRM: SWIRM domain; 47.3 19 0.0004 18.2 1.8 44 28-77 43-86 (86)
173 PRK06402 rpl12p 50S ribosomal 47.1 47 0.001 18.0 5.8 30 38-67 16-45 (106)
174 PF07492 Trehalase_Ca-bi: Neut 45.7 11 0.00024 15.5 0.6 17 62-78 3-19 (30)
175 TIGR01529 argR_whole arginine 45.3 57 0.0012 18.4 4.4 35 35-69 13-47 (146)
176 TIGR00135 gatC glutamyl-tRNA(G 45.2 44 0.00095 17.1 4.1 26 39-64 1-26 (93)
177 PRK00441 argR arginine repress 44.9 59 0.0013 18.5 4.2 34 35-68 15-48 (149)
178 PF15144 DUF4576: Domain of un 44.7 19 0.00042 18.4 1.5 43 36-79 38-80 (88)
179 PF07862 Nif11: Nitrogen fixat 44.5 32 0.00069 15.3 2.9 21 40-60 28-48 (49)
180 PF06384 ICAT: Beta-catenin-in 44.3 43 0.00093 17.1 2.7 20 43-62 21-40 (78)
181 PF12631 GTPase_Cys_C: Catalyt 43.9 41 0.00089 16.5 2.9 45 23-67 24-72 (73)
182 PF02761 Cbl_N2: CBL proto-onc 43.8 46 0.00099 17.3 2.8 45 36-80 20-64 (85)
183 PRK00034 gatC aspartyl/glutamy 43.4 47 0.001 17.0 4.1 29 38-66 2-30 (95)
184 KOG0046 Ca2+-binding actin-bun 43.2 53 0.0011 23.1 3.7 33 19-51 54-86 (627)
185 KOG2351 RNA polymerase II, fou 43.1 44 0.00095 18.7 2.8 27 41-67 101-127 (134)
186 cd05831 Ribosomal_P1 Ribosomal 42.9 54 0.0012 17.5 4.4 33 35-67 14-46 (103)
187 smart00540 LEM in nuclear memb 42.8 35 0.00076 15.3 2.3 18 38-55 5-22 (44)
188 cd08316 Death_FAS_TNFRSF6 Deat 41.9 55 0.0012 17.3 4.6 46 21-66 49-94 (97)
189 PF12174 RST: RCD1-SRO-TAF4 (R 41.5 28 0.00061 17.2 1.8 29 20-51 26-54 (70)
190 PF04558 tRNA_synt_1c_R1: Glut 38.8 26 0.00056 20.3 1.6 45 22-67 85-129 (164)
191 PTZ00315 2'-phosphotransferase 38.3 92 0.002 22.1 4.3 38 32-69 399-436 (582)
192 PF06226 DUF1007: Protein of u 37.7 46 0.00099 20.0 2.6 24 28-51 56-79 (212)
193 PF09107 SelB-wing_3: Elongati 37.2 47 0.001 15.2 2.2 31 35-70 7-37 (50)
194 TIGR00624 tag DNA-3-methyladen 37.1 37 0.00081 20.1 2.1 41 21-61 52-92 (179)
195 PRK04280 arginine repressor; P 36.8 81 0.0018 17.9 3.4 31 38-68 18-48 (148)
196 PF08414 NADPH_Ox: Respiratory 36.6 72 0.0015 17.1 3.8 41 22-67 30-70 (100)
197 cd08315 Death_TRAILR_DR4_DR5 D 36.5 68 0.0015 16.8 4.8 45 21-65 47-91 (96)
198 PF13331 DUF4093: Domain of un 36.3 66 0.0014 16.6 3.2 14 37-50 61-74 (87)
199 PF01479 S4: S4 domain; Inter 35.8 45 0.00097 14.5 2.5 30 44-73 3-32 (48)
200 PRK03341 arginine repressor; P 35.7 94 0.002 18.2 4.1 34 35-68 26-59 (168)
201 PF06648 DUF1160: Protein of u 35.6 82 0.0018 17.5 4.3 44 20-66 35-79 (122)
202 TIGR03830 CxxCG_CxxCG_HTH puta 35.5 74 0.0016 16.9 4.3 39 22-62 48-86 (127)
203 COG0735 Fur Fe2+/Zn2+ uptake r 34.9 87 0.0019 17.6 5.5 47 18-68 20-66 (145)
204 PF08044 DUF1707: Domain of un 34.5 55 0.0012 15.2 2.9 31 35-65 20-50 (53)
205 PF00690 Cation_ATPase_N: Cati 34.0 60 0.0013 15.4 3.9 32 24-55 6-37 (69)
206 PF05383 La: La domain; Inter 33.1 54 0.0012 15.6 2.0 20 27-46 20-39 (61)
207 PF05901 Excalibur: Excalibur 32.9 22 0.00048 15.1 0.6 9 30-38 26-34 (37)
208 KOG0713 Molecular chaperone (D 32.5 1.2E+02 0.0026 19.9 4.0 48 18-66 27-80 (336)
209 KOG4286 Dystrophin-like protei 31.6 44 0.00096 24.5 2.1 48 25-72 473-520 (966)
210 smart00657 RPOL4c DNA-directed 31.5 92 0.002 16.8 3.6 23 43-65 87-109 (118)
211 COG1438 ArgR Arginine represso 31.5 90 0.002 18.0 3.0 31 37-67 19-49 (150)
212 KOG2278 RNA:NAD 2'-phosphotran 31.3 75 0.0016 19.0 2.7 38 32-69 28-65 (207)
213 TIGR03798 ocin_TIGR03798 bacte 31.0 69 0.0015 15.2 4.0 26 38-63 24-49 (64)
214 PRK10353 3-methyl-adenine DNA 30.8 39 0.00084 20.2 1.5 37 21-57 53-89 (187)
215 TIGR01209 RNA ligase, Pab1020 30.0 76 0.0017 21.1 2.9 50 27-76 162-222 (374)
216 PF14513 DAG_kinase_N: Diacylg 29.9 1.1E+02 0.0024 17.3 4.2 36 35-70 45-81 (138)
217 PF01498 HTH_Tnp_Tc3_2: Transp 29.7 74 0.0016 15.2 2.8 32 36-67 11-42 (72)
218 PF07499 RuvA_C: RuvA, C-termi 29.5 63 0.0014 14.3 3.7 25 42-68 4-28 (47)
219 COG5069 SAC6 Ca2+-binding acti 29.5 55 0.0012 22.8 2.2 55 26-81 28-82 (612)
220 PF13551 HTH_29: Winged helix- 29.5 88 0.0019 16.0 6.1 49 19-67 61-111 (112)
221 KOG0169 Phosphoinositide-speci 29.3 1.2E+02 0.0026 22.3 3.8 32 36-67 218-251 (746)
222 KOG4403 Cell surface glycoprot 29.2 72 0.0016 21.9 2.7 30 21-50 67-96 (575)
223 PRK06369 nac nascent polypepti 29.1 79 0.0017 17.4 2.4 19 37-55 3-21 (115)
224 PF07848 PaaX: PaaX-like prote 28.9 83 0.0018 15.5 3.0 42 24-67 6-47 (70)
225 PF01475 FUR: Ferric uptake re 28.2 1E+02 0.0022 16.3 3.6 32 36-67 21-52 (120)
226 PF11848 DUF3368: Domain of un 28.2 69 0.0015 14.3 3.9 31 36-66 15-46 (48)
227 PF09373 PMBR: Pseudomurein-bi 27.9 58 0.0013 13.4 2.0 15 36-50 2-16 (33)
228 PF14178 YppF: YppF-like prote 27.8 71 0.0015 15.4 1.9 16 36-51 34-49 (60)
229 PRK11639 zinc uptake transcrip 27.8 1.3E+02 0.0028 17.3 4.1 44 20-67 27-70 (169)
230 PF04081 DNA_pol_delta_4: DNA 27.6 1.2E+02 0.0026 16.9 6.4 54 20-74 60-117 (124)
231 KOG3077 Uncharacterized conser 27.5 1.5E+02 0.0033 18.7 3.7 38 21-58 63-101 (260)
232 PRK09430 djlA Dna-J like membr 27.4 55 0.0012 20.5 1.9 44 23-67 54-104 (267)
233 COG3077 RelB DNA-damage-induci 27.2 98 0.0021 16.2 2.5 12 44-55 19-30 (88)
234 PRK05066 arginine repressor; P 27.2 1.3E+02 0.0029 17.3 3.7 31 38-68 23-54 (156)
235 COG2058 RPP1A Ribosomal protei 26.6 1.2E+02 0.0026 16.5 5.1 31 38-68 16-46 (109)
236 PF00046 Homeobox: Homeobox do 26.5 75 0.0016 14.2 5.2 41 19-66 10-50 (57)
237 PF06207 DUF1002: Protein of u 25.7 52 0.0011 20.2 1.5 40 40-79 173-216 (225)
238 PF02334 RTP: Replication term 25.6 63 0.0014 17.8 1.6 35 36-70 33-67 (122)
239 PF10668 Phage_terminase: Phag 25.3 87 0.0019 15.1 2.0 15 34-48 18-32 (60)
240 PF08100 Dimerisation: Dimeris 25.2 34 0.00074 15.8 0.5 36 28-65 12-48 (51)
241 PRK11235 bifunctional antitoxi 24.8 1E+02 0.0023 15.7 2.3 11 23-33 15-25 (80)
242 COG2979 Uncharacterized protei 24.7 1.2E+02 0.0027 18.6 2.9 32 34-65 122-153 (225)
243 PF12419 DUF3670: SNF2 Helicas 24.5 95 0.002 17.3 2.3 44 35-78 80-133 (141)
244 KOG0871 Class 2 transcription 24.5 1.2E+02 0.0026 17.5 2.7 25 31-55 59-83 (156)
245 PF11907 DUF3427: Domain of un 24.5 1.9E+02 0.0041 18.1 3.9 34 35-68 24-57 (274)
246 TIGR02787 codY_Gpos GTP-sensin 24.1 2E+02 0.0042 18.2 4.2 48 15-68 176-223 (251)
247 PF03352 Adenine_glyco: Methyl 24.1 29 0.00063 20.5 0.2 42 21-62 48-89 (179)
248 PF07592 DDE_Tnp_ISAZ013: Rhod 24.0 2.1E+02 0.0046 18.6 4.0 18 38-55 40-57 (311)
249 PF09682 Holin_LLH: Phage holi 23.9 1.3E+02 0.0028 16.0 4.0 25 43-67 76-100 (108)
250 cd07153 Fur_like Ferric uptake 23.8 1.2E+02 0.0027 15.8 5.0 32 36-67 14-45 (116)
251 COG1049 AcnB Aconitase B [Ener 23.7 1.5E+02 0.0033 21.5 3.5 46 32-77 789-834 (852)
252 PF02337 Gag_p10: Retroviral G 23.3 1.2E+02 0.0027 15.8 2.5 15 37-51 23-37 (90)
253 COG5250 RPB4 RNA polymerase II 23.1 1.5E+02 0.0032 16.6 2.8 26 41-66 105-130 (138)
254 PF08002 DUF1697: Protein of u 23.0 1E+02 0.0022 17.2 2.2 15 38-52 18-32 (137)
255 smart00549 TAFH TAF homology. 23.0 92 0.002 16.4 1.9 30 18-50 22-51 (92)
256 PF13344 Hydrolase_6: Haloacid 22.9 50 0.0011 17.2 1.0 23 35-57 38-60 (101)
257 PF09687 PRESAN: Plasmodium RE 22.7 1.3E+02 0.0029 15.7 3.8 30 38-67 5-34 (129)
258 PF08672 APC2: Anaphase promot 22.7 1.1E+02 0.0023 14.6 3.3 29 21-50 14-44 (60)
259 PF14848 HU-DNA_bdg: DNA-bindi 22.6 1.5E+02 0.0032 16.2 4.2 32 35-66 25-56 (124)
260 PF13182 DUF4007: Protein of u 22.5 1.8E+02 0.0038 18.4 3.5 44 34-78 216-261 (286)
261 PF04391 DUF533: Protein of un 22.3 1.4E+02 0.003 17.8 2.8 26 34-59 91-117 (188)
262 cd00952 CHBPH_aldolase Trans-o 22.3 1.9E+02 0.004 18.4 3.6 32 36-67 23-70 (309)
263 TIGR03685 L21P_arch 50S riboso 22.1 1.5E+02 0.0031 16.0 5.7 31 38-68 16-46 (105)
264 PF11569 Homez: Homeodomain le 22.1 1.1E+02 0.0024 14.5 2.5 41 21-68 10-50 (56)
265 TIGR01565 homeo_ZF_HD homeobox 22.0 1.1E+02 0.0024 14.5 3.1 30 19-53 11-44 (58)
266 cd07894 Adenylation_RNA_ligase 22.0 1.2E+02 0.0026 19.9 2.7 40 32-71 135-184 (342)
267 PHA02142 putative RNA ligase 21.9 34 0.00073 22.6 0.2 29 27-55 274-302 (366)
268 PF11829 DUF3349: Protein of u 21.7 1.3E+02 0.0029 15.9 2.4 27 40-66 21-47 (96)
269 KOG3341 RNA polymerase II tran 21.6 2.2E+02 0.0047 17.8 4.1 39 35-73 113-155 (249)
270 PHA02554 13 neck protein; Prov 21.5 2.3E+02 0.0051 18.4 3.8 16 40-55 7-23 (311)
271 PF02885 Glycos_trans_3N: Glyc 21.5 1.1E+02 0.0025 14.5 3.0 26 37-62 13-39 (66)
272 COG4807 Uncharacterized protei 21.4 1.2E+02 0.0025 17.3 2.2 38 22-68 91-128 (155)
273 COG0721 GatC Asp-tRNAAsn/Glu-t 21.3 1.4E+02 0.0031 15.6 3.9 28 38-65 2-29 (96)
274 PRK03430 hypothetical protein; 21.1 1.9E+02 0.004 16.8 4.2 41 25-67 6-47 (157)
275 COG2266 GTP:adenosylcobinamide 21.1 97 0.0021 18.4 2.0 53 14-68 49-112 (177)
276 PF07261 DnaB_2: Replication i 21.0 98 0.0021 14.8 1.8 10 37-46 11-20 (77)
277 cd08306 Death_FADD Fas-associa 20.8 1.4E+02 0.003 15.2 3.3 40 22-61 43-82 (86)
278 PF14754 IFR3_antag: Papain-li 20.7 24 0.00052 20.6 -0.6 35 21-55 175-209 (249)
279 cd08784 Death_DRs Death Domain 20.6 1.3E+02 0.0029 14.9 3.1 35 22-56 40-74 (79)
280 PRK10945 gene expression modul 20.6 1.4E+02 0.0029 15.0 3.5 27 40-66 20-46 (72)
281 PF10982 DUF2789: Protein of u 20.6 1.4E+02 0.003 15.1 3.9 29 42-70 6-34 (74)
282 PF04361 DUF494: Protein of un 20.3 1.9E+02 0.0041 16.6 5.5 44 23-68 4-48 (155)
283 KOG3332 N-acetylglucosaminyl p 20.3 97 0.0021 19.3 1.9 24 32-55 77-100 (247)
284 TIGR00735 hisF imidazoleglycer 20.3 1.3E+02 0.0028 18.5 2.5 19 36-54 234-252 (254)
285 TIGR03249 KdgD 5-dehydro-4-deo 20.2 2.3E+02 0.0049 17.8 3.6 32 35-66 19-66 (296)
286 PF05099 TerB: Tellurite resis 20.2 1.3E+02 0.0028 16.2 2.3 33 35-67 36-70 (140)
287 PF13623 SurA_N_2: SurA N-term 20.1 1.9E+02 0.004 16.4 3.0 21 44-64 95-115 (145)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.63 E-value=7e-16 Score=87.32 Aligned_cols=65 Identities=22% Similarity=0.430 Sum_probs=61.8
Q ss_pred CCChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 17 SNGKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 17 ~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
..+..++++.+|+.||+|++|+|+..+|+.+++.+|..+++++++.+++.++.+++|.|+|++|+
T Consensus 87 ~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~ 151 (160)
T COG5126 87 RGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFK 151 (160)
T ss_pred cCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHH
Confidence 45668899999999999999999999999999999999999999999999999999999999984
No 2
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.60 E-value=2e-15 Score=78.53 Aligned_cols=62 Identities=11% Similarity=0.161 Sum_probs=57.8
Q ss_pred hHHHHHHHHHhhcC-CCCCccCHHHHHHHHHH-cCCCCCH-HHHHHHHHhhCCCCCCcccccCCC
Q 047967 20 KDGLMEDVFKVMDK-DGDGRLSHDDLKSYMNC-ASFAATD-DDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 20 ~~~~~~~~F~~~D~-~~~g~i~~~el~~~l~~-~g~~~~~-~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
.+..+..+|+.||+ +++|+|+..||+.+|.. +|..++. .+++.+++.+|.+++|.|+|+||+
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~ 70 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFW 70 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHH
Confidence 45678999999999 99999999999999999 8988888 899999999999999999999984
No 3
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.58 E-value=2.6e-15 Score=73.90 Aligned_cols=59 Identities=27% Similarity=0.451 Sum_probs=51.9
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHH----HHHHHHHhhCCCCCCcccccCCC
Q 047967 23 LMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDD----DIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 23 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~----~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
+++.+|+.+|++++|+|+.+||..++..++...+.. .++.++..+|.+++|.|+|+||+
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~ 63 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFL 63 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHh
Confidence 478999999999999999999999999999776554 44556999999999999999984
No 4
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.55 E-value=1.5e-14 Score=75.11 Aligned_cols=62 Identities=18% Similarity=0.285 Sum_probs=57.5
Q ss_pred hHHHHHHHHHhhc-CCCCC-ccCHHHHHHHHHH-----cCCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 20 KDGLMEDVFKVMD-KDGDG-RLSHDDLKSYMNC-----ASFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 20 ~~~~~~~~F~~~D-~~~~g-~i~~~el~~~l~~-----~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
.+..++.+|+.|| ++++| .|+..+|+.+|+. +|...+.+++..+++.+|.+++|.|+|++|+
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~ 74 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFM 74 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 4568999999998 79999 5999999999999 8998999999999999999999999999984
No 5
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.55 E-value=1.4e-14 Score=81.67 Aligned_cols=62 Identities=31% Similarity=0.459 Sum_probs=59.2
Q ss_pred hHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 20 KDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 20 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
..+.++.+|+.||++++|+|+..||+.+|..+|.+.+.+++..+++..|.+++|.|+|++|+
T Consensus 83 ~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~ 144 (151)
T KOG0027|consen 83 SSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFV 144 (151)
T ss_pred cHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999884
No 6
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.46 E-value=1.7e-13 Score=77.24 Aligned_cols=64 Identities=20% Similarity=0.395 Sum_probs=60.4
Q ss_pred CChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 18 NGKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 18 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
......++.+|..||++++|+|+..+|..+++.+|..++..++..++..+|.+++|.|++++|+
T Consensus 4 ~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~ 67 (151)
T KOG0027|consen 4 EEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFL 67 (151)
T ss_pred HHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHH
Confidence 3456789999999999999999999999999999999999999999999999999999999884
No 7
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.44 E-value=2.2e-13 Score=71.70 Aligned_cols=62 Identities=16% Similarity=0.302 Sum_probs=56.6
Q ss_pred CChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 18 NGKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 18 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
..+...++.+|..+|++++|.|+..++..+++..| ++..++..++..++.+++|.|+|++|+
T Consensus 6 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~ 67 (96)
T smart00027 6 PEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFA 67 (96)
T ss_pred HHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHH
Confidence 34677899999999999999999999999999976 678899999999999999999999985
No 8
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.44 E-value=2.7e-13 Score=71.09 Aligned_cols=62 Identities=16% Similarity=0.171 Sum_probs=55.9
Q ss_pred hHHHHHHHHHhhcC-CC-CCccCHHHHHHHHHH-----cCCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 20 KDGLMEDVFKVMDK-DG-DGRLSHDDLKSYMNC-----ASFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 20 ~~~~~~~~F~~~D~-~~-~g~i~~~el~~~l~~-----~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
....++.+|..||. ++ +|+|+..||+.+++. +|..++..+++.++..+|.+++|.|+|++|+
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~ 74 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFV 74 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 45789999999997 87 699999999999986 5778899999999999999999999999984
No 9
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.43 E-value=2.9e-13 Score=66.46 Aligned_cols=56 Identities=20% Similarity=0.510 Sum_probs=51.3
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 24 MEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 24 ~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
++.+|..+|++++|.|+..|+..+++.+|. +..+++.++..++.+++|.|+|++|+
T Consensus 1 ~~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~ 56 (67)
T cd00052 1 YDQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFA 56 (67)
T ss_pred ChHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHH
Confidence 367899999999999999999999999874 88889999999999999999999984
No 10
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.42 E-value=5.5e-13 Score=69.26 Aligned_cols=62 Identities=18% Similarity=0.318 Sum_probs=55.7
Q ss_pred hHHHHHHHHHhhcC-CC-CCccCHHHHHHHHH---HcCCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 20 KDGLMEDVFKVMDK-DG-DGRLSHDDLKSYMN---CASFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 20 ~~~~~~~~F~~~D~-~~-~g~i~~~el~~~l~---~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
.+..+-.+|.+||. ++ +|+|+..||+.++. .+|.+++.+++.++++.+|.+++|+|+|++|+
T Consensus 8 ~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv 74 (88)
T cd05029 8 AIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYV 74 (88)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHH
Confidence 35678889999998 66 89999999999997 36999999999999999999999999999984
No 11
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.42 E-value=6.1e-13 Score=69.48 Aligned_cols=62 Identities=21% Similarity=0.345 Sum_probs=54.5
Q ss_pred hHHHHHHHHHhhc-CCCCC-ccCHHHHHHHHHH-cC----CCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 20 KDGLMEDVFKVMD-KDGDG-RLSHDDLKSYMNC-AS----FAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 20 ~~~~~~~~F~~~D-~~~~g-~i~~~el~~~l~~-~g----~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
.++.++.+|..|| ++++| .|+..||+.+|+. +| ..++..+++.++..+|.+++|.|+|++|+
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~ 75 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFV 75 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHH
Confidence 3578999999997 99999 5999999999985 44 34688899999999999999999999984
No 12
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.41 E-value=7.5e-13 Score=69.37 Aligned_cols=62 Identities=18% Similarity=0.256 Sum_probs=53.1
Q ss_pred hHHHHHHHHHhhc-CCCCC-ccCHHHHHHHHHH-c----CCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 20 KDGLMEDVFKVMD-KDGDG-RLSHDDLKSYMNC-A----SFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 20 ~~~~~~~~F~~~D-~~~~g-~i~~~el~~~l~~-~----g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
.+..+..+|..|| +|++| +|+..||+.++.. + +...+..++.+++..+|.+++|.|+|+||+
T Consensus 8 a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~ 76 (93)
T cd05026 8 AMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFV 76 (93)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHH
Confidence 3567888899999 78998 5999999999976 2 334477889999999999999999999985
No 13
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.41 E-value=4.8e-13 Score=75.87 Aligned_cols=64 Identities=19% Similarity=0.435 Sum_probs=59.8
Q ss_pred CCChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 17 SNGKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 17 ~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
...++++++++|..+|++++|.|+..+|..+++.+|.+++..++.+++..++. +++.|+|.+|+
T Consensus 15 t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl 78 (160)
T COG5126 15 TEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFL 78 (160)
T ss_pred CHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHH
Confidence 44567899999999999999999999999999999999999999999999998 89999999884
No 14
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.39 E-value=5.8e-13 Score=68.96 Aligned_cols=63 Identities=14% Similarity=0.178 Sum_probs=55.6
Q ss_pred ChHHHHHHHHHhhcC--CCCCccCHHHHHHHHHH-cCCCC----CHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 19 GKDGLMEDVFKVMDK--DGDGRLSHDDLKSYMNC-ASFAA----TDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 19 ~~~~~~~~~F~~~D~--~~~g~i~~~el~~~l~~-~g~~~----~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
.+++.++.+|..+|+ +++|.|+..+|..+++. +|.++ +..++..++..++.+++|.|+|++|+
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~ 74 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFL 74 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHH
Confidence 456789999999999 89999999999999986 55444 58899999999999999999999984
No 15
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.33 E-value=5.5e-12 Score=60.17 Aligned_cols=58 Identities=29% Similarity=0.565 Sum_probs=54.6
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 24 MEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 24 ~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
+..+|..+|.+++|.|+.+++..++..++.+.+...+..++..++.+++|.|++++|+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~ 59 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFL 59 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHH
Confidence 5788999999999999999999999999999999999999999999999999999874
No 16
>PTZ00183 centrin; Provisional
Probab=99.30 E-value=8.8e-12 Score=69.98 Aligned_cols=65 Identities=22% Similarity=0.414 Sum_probs=59.7
Q ss_pred CCChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 17 SNGKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 17 ~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
.+.+...+..+|..+|.+++|.|+..+|..++..+|..++...+..++..+|.+++|.|+|.+|+
T Consensus 12 ~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~ 76 (158)
T PTZ00183 12 TEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFL 76 (158)
T ss_pred CHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHH
Confidence 34567889999999999999999999999999999988888999999999999999999999884
No 17
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=7.8e-12 Score=70.47 Aligned_cols=64 Identities=22% Similarity=0.374 Sum_probs=60.2
Q ss_pred CChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 18 NGKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 18 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
.++.+.++.+|+.+|-|++|+||..+|+++.+.+|.++++.+++.++..++.+++|-|+-++|+
T Consensus 102 ~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~ 165 (172)
T KOG0028|consen 102 RDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFI 165 (172)
T ss_pred cCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHH
Confidence 3467899999999999999999999999999999999999999999999999999999988873
No 18
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.29 E-value=2.6e-12 Score=60.93 Aligned_cols=47 Identities=13% Similarity=0.347 Sum_probs=44.4
Q ss_pred CCCccCHHHHHHHHHHcCCC-CCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 35 GDGRLSHDDLKSYMNCASFA-ATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 35 ~~g~i~~~el~~~l~~~g~~-~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
++|.|+.++|+.+|..+|.+ ++..+++.++..+|.+++|.|+|+||+
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~ 48 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFI 48 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHH
Confidence 47999999999999888999 999999999999999999999999984
No 19
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.28 E-value=9.8e-12 Score=73.04 Aligned_cols=63 Identities=13% Similarity=0.206 Sum_probs=58.4
Q ss_pred ChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 19 GKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 19 ~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
.-+..++.+|+.+|+|+.|.|+..||+.+|..+|+.++....+.+++.++..++|.|.|++|+
T Consensus 121 ~~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI 183 (221)
T KOG0037|consen 121 KYINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFI 183 (221)
T ss_pred HHHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHH
Confidence 345688899999999999999999999999999999999999999999998889999999985
No 20
>PTZ00183 centrin; Provisional
Probab=99.27 E-value=2e-11 Score=68.48 Aligned_cols=62 Identities=21% Similarity=0.356 Sum_probs=57.8
Q ss_pred hHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 20 KDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 20 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
....++.+|..+|++++|.|+..+|..++..+|..++..++..++..++.+++|.|+|++|+
T Consensus 88 ~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~ 149 (158)
T PTZ00183 88 PREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFY 149 (158)
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999873
No 21
>PTZ00184 calmodulin; Provisional
Probab=99.26 E-value=2e-11 Score=67.74 Aligned_cols=62 Identities=27% Similarity=0.500 Sum_probs=57.7
Q ss_pred hHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 20 KDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 20 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
....+..+|..+|.+++|.|+..++..++..+|..++..++..++..+|.+++|.|+|++|+
T Consensus 82 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~ 143 (149)
T PTZ00184 82 SEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFV 143 (149)
T ss_pred HHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999984
No 22
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.25 E-value=2.4e-11 Score=63.19 Aligned_cols=62 Identities=21% Similarity=0.270 Sum_probs=53.5
Q ss_pred hHHHHHHHHHh-hcCCCCC-ccCHHHHHHHHHHc-----CCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 20 KDGLMEDVFKV-MDKDGDG-RLSHDDLKSYMNCA-----SFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 20 ~~~~~~~~F~~-~D~~~~g-~i~~~el~~~l~~~-----g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
.+..+..+|+. +|++++| +|+..||+.++... +...+..++.+++..+|.+++|.|+|+||+
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~ 75 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFL 75 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHH
Confidence 46788999999 7787876 99999999999975 345667889999999999999999999985
No 23
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.23 E-value=2.8e-11 Score=68.28 Aligned_cols=64 Identities=16% Similarity=0.350 Sum_probs=59.5
Q ss_pred CChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 18 NGKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 18 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
+.+...++.+|..||.+.+|+|+..||..+++++|+.+...++.+++..+|.++.|.|+|++|+
T Consensus 29 ~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~ 92 (172)
T KOG0028|consen 29 EEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFR 92 (172)
T ss_pred HHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHH
Confidence 3344789999999999999999999999999999999999999999999999999999999884
No 24
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.21 E-value=1.8e-11 Score=67.62 Aligned_cols=67 Identities=21% Similarity=0.390 Sum_probs=60.9
Q ss_pred CCCCCChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 14 KSKSNGKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 14 ~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
+.+.+.+.+.+.+.++.||++++|.|...+|+.+|..+|.+++++++..++.-.. |.+|.|+|++|+
T Consensus 80 knk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE~fV 146 (152)
T KOG0030|consen 80 KNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYEAFV 146 (152)
T ss_pred hccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHHHHH
Confidence 4566677889999999999999999999999999999999999999999998875 779999999885
No 25
>PTZ00184 calmodulin; Provisional
Probab=99.21 E-value=3.5e-11 Score=66.78 Aligned_cols=63 Identities=25% Similarity=0.466 Sum_probs=57.5
Q ss_pred ChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 19 GKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 19 ~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
...+.++..|..+|.+++|.|+..+|..++..++.+++...+..++..++.+++|.|+|++|+
T Consensus 8 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~ 70 (149)
T PTZ00184 8 EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL 70 (149)
T ss_pred HHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHH
Confidence 356789999999999999999999999999999988888899999999999999999999874
No 26
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=99.18 E-value=3.9e-11 Score=70.06 Aligned_cols=62 Identities=26% Similarity=0.246 Sum_probs=58.4
Q ss_pred hHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 20 KDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 20 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
+++.+..+|..+|.+.||+|+..||+.+|.++|.+-|.-.+..+++..|.|.+|+|+|-+|+
T Consensus 97 qIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfrefl 158 (244)
T KOG0041|consen 97 QIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFL 158 (244)
T ss_pred HHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999998874
No 27
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.17 E-value=1.1e-10 Score=63.46 Aligned_cols=60 Identities=18% Similarity=0.248 Sum_probs=51.2
Q ss_pred CChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 18 NGKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 18 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
+.....+.-+|..+|+|++|.|+..||..+. + ......+..++..+|.+++|.|+++||.
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l--~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~ 103 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHHELAPIR--L--DPNEHCIKPFFESCDLDKDGSISLDEWC 103 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c--cchHHHHHHHHHHHCCCCCCCCCHHHHH
Confidence 3345678999999999999999999999876 2 2446778899999999999999999973
No 28
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.14 E-value=7.5e-11 Score=65.22 Aligned_cols=66 Identities=12% Similarity=0.237 Sum_probs=59.3
Q ss_pred CCCChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCC--CCCcccccCCC
Q 047967 16 KSNGKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGD--ENDGVSSPSFS 81 (81)
Q Consensus 16 ~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~--~~~~i~~~eF~ 81 (81)
..+++..+++.+|..||..+||+|+..++..+|+++|.++++.++.+.+..+..+ .-.+|+|++|+
T Consensus 5 ~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fL 72 (152)
T KOG0030|consen 5 FTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFL 72 (152)
T ss_pred cCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHH
Confidence 4566789999999999999999999999999999999999999999999999877 34688888874
No 29
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.09 E-value=2e-10 Score=59.60 Aligned_cols=62 Identities=11% Similarity=0.097 Sum_probs=53.6
Q ss_pred hHHHHHHHHHhhcCC--CCCccCHHHHHHHHH-HcCCCCC----HHHHHHHHHhhCCCCCCcccccCCC
Q 047967 20 KDGLMEDVFKVMDKD--GDGRLSHDDLKSYMN-CASFAAT----DDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 20 ~~~~~~~~F~~~D~~--~~g~i~~~el~~~l~-~~g~~~~----~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
.+..+...|..++.. ++|.|+..||+.++. .+|..++ ..++..++..+|.+++|.|+|++|+
T Consensus 6 ~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~ 74 (88)
T cd05030 6 AIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFL 74 (88)
T ss_pred HHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHH
Confidence 456788899999965 479999999999997 5666666 8899999999999999999999985
No 30
>PF14658 EF-hand_9: EF-hand domain
Probab=99.09 E-value=1.6e-10 Score=56.65 Aligned_cols=56 Identities=18% Similarity=0.367 Sum_probs=52.2
Q ss_pred HHHHhhcCCCCCccCHHHHHHHHHHcCC-CCCHHHHHHHHHhhCCCCC-CcccccCCC
Q 047967 26 DVFKVMDKDGDGRLSHDDLKSYMNCASF-AATDDDIEAMIRLGGGDEN-DGVSSPSFS 81 (81)
Q Consensus 26 ~~F~~~D~~~~g~i~~~el~~~l~~~g~-~~~~~~~~~~~~~~d~~~~-~~i~~~eF~ 81 (81)
.+|..||+++.|.|...++..+|++.+. .+++.+++.+..++|.++. |.|+++.|+
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~ 59 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFL 59 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHH
Confidence 4799999999999999999999999987 8899999999999999988 999999884
No 31
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.07 E-value=6.3e-10 Score=64.83 Aligned_cols=61 Identities=25% Similarity=0.376 Sum_probs=51.6
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHc-CCCCC--H----HHHHHHHHhhCCCCCCcccccCCC
Q 047967 21 DGLMEDVFKVMDKDGDGRLSHDDLKSYMNCA-SFAAT--D----DDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 21 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~-g~~~~--~----~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
.++++-+|+.||.+++|+|+.+|+..++..+ +...+ + ..+++++..+|.+++|+|+|+||.
T Consensus 103 ~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~ 170 (187)
T KOG0034|consen 103 REKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFC 170 (187)
T ss_pred HHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 3689999999999999999999999999976 43444 3 345678899999999999999983
No 32
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.03 E-value=7.6e-10 Score=62.26 Aligned_cols=68 Identities=21% Similarity=0.417 Sum_probs=62.0
Q ss_pred CCCCCChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 14 KSKSNGKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 14 ~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
+....+.++.+..+|+.||.++.|.|....|+.+|...|-+++.+++..+++.+-.+..|.++|..|+
T Consensus 93 kL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~ 160 (171)
T KOG0031|consen 93 KLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFT 160 (171)
T ss_pred HhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHH
Confidence 34456678899999999999999999999999999999999999999999999999999999998763
No 33
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.02 E-value=7.8e-10 Score=70.30 Aligned_cols=62 Identities=13% Similarity=0.303 Sum_probs=58.4
Q ss_pred ChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCC
Q 047967 19 GKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSF 80 (81)
Q Consensus 19 ~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF 80 (81)
..+.++..+|+..|.++||.|+..|+...|+.+|.++++++++++++.+|+++++.|+|+||
T Consensus 79 ~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~ 140 (463)
T KOG0036|consen 79 NKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEW 140 (463)
T ss_pred HhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHH
Confidence 34568899999999999999999999999999999999999999999999999999999886
No 34
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=99.02 E-value=6.1e-10 Score=46.53 Aligned_cols=29 Identities=31% Similarity=0.707 Sum_probs=26.5
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHc
Q 047967 23 LMEDVFKVMDKDGDGRLSHDDLKSYMNCA 51 (81)
Q Consensus 23 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 51 (81)
+++.+|+.+|+|++|+|+.+||..+++.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 47899999999999999999999999864
No 35
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.94 E-value=1.7e-09 Score=45.77 Aligned_cols=30 Identities=30% Similarity=0.696 Sum_probs=26.6
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHH-HcC
Q 047967 23 LMEDVFKVMDKDGDGRLSHDDLKSYMN-CAS 52 (81)
Q Consensus 23 ~~~~~F~~~D~~~~g~i~~~el~~~l~-~~g 52 (81)
+++.+|..+|++++|+|+.+||+.+|+ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478999999999999999999999999 565
No 36
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.91 E-value=3.7e-09 Score=59.54 Aligned_cols=59 Identities=20% Similarity=0.453 Sum_probs=50.6
Q ss_pred CChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCC
Q 047967 18 NGKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSF 80 (81)
Q Consensus 18 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF 80 (81)
..++.+++.+|..+|.|+||.|+.++|+.++.++|...+++++..|+.+. .|.|+|--|
T Consensus 28 q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~F 86 (171)
T KOG0031|consen 28 QSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVF 86 (171)
T ss_pred HHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHH
Confidence 55688999999999999999999999999999999999999999888775 344665443
No 37
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.82 E-value=9.2e-09 Score=54.92 Aligned_cols=62 Identities=18% Similarity=0.352 Sum_probs=54.5
Q ss_pred CCChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 17 SNGKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 17 ~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
++.+...+..+|...|. .+|.|+..+.+.++...+ ++.+.+.++|...|.+.+|+++++||+
T Consensus 5 s~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~ 66 (104)
T PF12763_consen 5 SPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFA 66 (104)
T ss_dssp SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHH
T ss_pred CHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHH
Confidence 45577899999999995 689999999999999877 777889999999999999999999984
No 38
>PLN02964 phosphatidylserine decarboxylase
Probab=98.80 E-value=1.8e-08 Score=67.68 Aligned_cols=58 Identities=14% Similarity=0.293 Sum_probs=53.5
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCC
Q 047967 23 LMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSF 80 (81)
Q Consensus 23 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF 80 (81)
.+..+|..+|.+++|.|+..||..++..++...+.+++..+|..+|.+++|.|+++||
T Consensus 180 fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL 237 (644)
T PLN02964 180 FARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDEL 237 (644)
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHH
Confidence 4889999999999999999999999999888888899999999999999999999886
No 39
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.72 E-value=7.1e-08 Score=50.25 Aligned_cols=61 Identities=16% Similarity=0.120 Sum_probs=50.8
Q ss_pred hHHHHHHHHHhhcCCCCCccCHHHHHHHHHH-----cCCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 20 KDGLMEDVFKVMDKDGDGRLSHDDLKSYMNC-----ASFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 20 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~-----~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
.+..+...|..|-. +++.++..||+..|.. +...-+...+.+++...|.++||.|+|.||+
T Consensus 6 ai~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~ 71 (91)
T cd05024 6 SMEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFF 71 (91)
T ss_pred HHHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 45678889999984 4679999999999874 2444567889999999999999999999984
No 40
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.70 E-value=2.9e-08 Score=64.10 Aligned_cols=60 Identities=22% Similarity=0.384 Sum_probs=53.9
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHHc----CCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 22 GLMEDVFKVMDKDGDGRLSHDDLKSYMNCA----SFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 22 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~----g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
..+..+|+.+|.|+.|.|+.+||+.+++-+ ...++++++.++-+.+|.+++|.|+++||+
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfL 610 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFL 610 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHH
Confidence 457889999999999999999999998865 356789999999999999999999999984
No 41
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.66 E-value=3.8e-08 Score=57.60 Aligned_cols=64 Identities=17% Similarity=0.263 Sum_probs=52.3
Q ss_pred CCChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCC
Q 047967 17 SNGKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSF 80 (81)
Q Consensus 17 ~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF 80 (81)
..+.......+|+.||.+++|.|+..|+..++..+.-...++.+.=+++.+|.+++|+|+++|+
T Consensus 59 ~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Em 122 (193)
T KOG0044|consen 59 DGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEM 122 (193)
T ss_pred CCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHH
Confidence 3455667888999999999999999998888887655555566667799999999999998875
No 42
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.66 E-value=1.2e-07 Score=56.04 Aligned_cols=62 Identities=16% Similarity=0.252 Sum_probs=55.6
Q ss_pred hHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcC-CCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 20 KDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCAS-FAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 20 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g-~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
....+...|...|+++.|.|+.+||+.+|.... -+++.+.++-|+.++|.+..|+|+++||.
T Consensus 55 ~~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~ 117 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFK 117 (221)
T ss_pred ccHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHH
Confidence 456899999999999999999999999999653 56788999999999999999999999983
No 43
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.64 E-value=4.3e-08 Score=57.39 Aligned_cols=62 Identities=11% Similarity=0.324 Sum_probs=50.5
Q ss_pred hHHHHHHHHHhhcCCCCCccCHHHHHHHHHHc----CC-------CCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 20 KDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCA----SF-------AATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 20 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~----g~-------~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
..+++.=+|+.+|.|++|+|+..|+-.++.+. |. ....+.+.++|..+|.+.+|.|+++||+
T Consensus 98 ~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~ 170 (193)
T KOG0044|consen 98 LEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFI 170 (193)
T ss_pred HHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHH
Confidence 34566667999999999999999999988864 32 1135667889999999999999999984
No 44
>PLN02964 phosphatidylserine decarboxylase
Probab=98.63 E-value=6.8e-08 Score=64.99 Aligned_cols=59 Identities=15% Similarity=0.244 Sum_probs=52.6
Q ss_pred ChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcC-CCCCHHH---HHHHHHhhCCCCCCcccccCCC
Q 047967 19 GKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCAS-FAATDDD---IEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 19 ~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g-~~~~~~~---~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
.+.+.++++|..+|+|++|++ +..+++.+| ..++..+ ++.++..+|.+++|.|+++||+
T Consensus 140 kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl 202 (644)
T PLN02964 140 QEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFS 202 (644)
T ss_pred HHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHH
Confidence 356789999999999999997 889999999 5888776 7999999999999999999984
No 45
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.60 E-value=7.5e-08 Score=38.79 Aligned_cols=25 Identities=32% Similarity=0.836 Sum_probs=22.3
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHH
Q 047967 24 MEDVFKVMDKDGDGRLSHDDLKSYM 48 (81)
Q Consensus 24 ~~~~F~~~D~~~~g~i~~~el~~~l 48 (81)
++++|+.+|.|++|.|+..|+.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4679999999999999999999854
No 46
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.58 E-value=1.7e-07 Score=60.00 Aligned_cols=63 Identities=16% Similarity=0.276 Sum_probs=56.5
Q ss_pred ChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCC-CCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 19 GKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFA-ATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 19 ~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~-~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
....+++.+|..+|.+++|.++..++.+.+..+..+ .....+..++..+|.+.+|+|+|+||.
T Consensus 11 er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~ 74 (463)
T KOG0036|consen 11 ERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFK 74 (463)
T ss_pred HHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHH
Confidence 345689999999999999999999999999998866 677788899999999999999999983
No 47
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.36 E-value=6e-07 Score=64.74 Aligned_cols=67 Identities=21% Similarity=0.369 Sum_probs=57.1
Q ss_pred CCCCChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCC-------HHHHHHHHHhhCCCCCCcccccCCC
Q 047967 15 SKSNGKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAAT-------DDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 15 ~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~-------~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
..+..+..++.-+|.+||++.+|.+++.+|+.||+.+|..++ +.+...++...|++.+|+|+..+|+
T Consensus 2246 GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~ 2319 (2399)
T KOG0040|consen 2246 GVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYM 2319 (2399)
T ss_pred CCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHH
Confidence 344556678889999999999999999999999999997762 3378899999999999999987763
No 48
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.36 E-value=8.5e-07 Score=56.92 Aligned_cols=52 Identities=13% Similarity=0.319 Sum_probs=45.0
Q ss_pred CCChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 17 SNGKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 17 ~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
.......++.+|+.+|.+++|.|+..|+.. +..+|..+|.+++|.|+++||.
T Consensus 329 ~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~ 380 (391)
T PRK12309 329 GEAFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMR 380 (391)
T ss_pred cChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHH
Confidence 344567899999999999999999999941 4689999999999999999983
No 49
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.15 E-value=7e-07 Score=37.15 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=20.9
Q ss_pred HHHHHHHhhCCCCCCcccccCCC
Q 047967 59 DIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 59 ~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
+++++|+.+|.+++|+|+++||+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~ 23 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFK 23 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHH
Confidence 57899999999999999999984
No 50
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.14 E-value=1.8e-06 Score=40.26 Aligned_cols=43 Identities=9% Similarity=0.264 Sum_probs=33.1
Q ss_pred ccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCC
Q 047967 38 RLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSF 80 (81)
Q Consensus 38 ~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF 80 (81)
+++..|++..|+.+++.+++..+..+|..+|.+++|+++-+||
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef 43 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEF 43 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHH
Confidence 3678899999999999999999999999999999999887766
No 51
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.12 E-value=2.9e-07 Score=49.85 Aligned_cols=58 Identities=16% Similarity=0.233 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCC
Q 047967 21 DGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSF 80 (81)
Q Consensus 21 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF 80 (81)
...+.-.|..+|.|+||.|+..|+..+...+ .....-+..++..+|.++++.|+..|+
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW 110 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEW 110 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHH
Confidence 3456667999999999999999999876654 344456789999999999999998876
No 52
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.10 E-value=3.2e-06 Score=47.63 Aligned_cols=58 Identities=28% Similarity=0.422 Sum_probs=47.9
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHcC-CCCCHHHH----HHHHHhhCCCCCCcccccCC
Q 047967 23 LMEDVFKVMDKDGDGRLSHDDLKSYMNCAS-FAATDDDI----EAMIRLGGGDENDGVSSPSF 80 (81)
Q Consensus 23 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~g-~~~~~~~~----~~~~~~~d~~~~~~i~~~eF 80 (81)
+..-+|+.+|-|+++.|...+|..++..+- -.++.+++ .+++.+.|.+++|++++.+|
T Consensus 109 K~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eF 171 (189)
T KOG0038|consen 109 KAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEF 171 (189)
T ss_pred hhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHH
Confidence 345578888999999999999999999873 45676665 46788899999999999887
No 53
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=4.4e-06 Score=52.04 Aligned_cols=60 Identities=22% Similarity=0.317 Sum_probs=50.1
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHHcC-CCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 22 GLMEDVFKVMDKDGDGRLSHDDLKSYMNCAS-FAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 22 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g-~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
.+-+..|+.-|.|++|.++.+||...|---- ..+...-+...+..+|+|++|+|+++||+
T Consensus 163 ~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfi 223 (325)
T KOG4223|consen 163 ARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFI 223 (325)
T ss_pred HHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHH
Confidence 4556789999999999999999999887433 33455667889999999999999999985
No 54
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=98.01 E-value=7.7e-06 Score=53.99 Aligned_cols=62 Identities=18% Similarity=0.274 Sum_probs=54.4
Q ss_pred ChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCC---CHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 19 GKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAA---TDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 19 ~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~---~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
.+...++..|...| +.+|+|+..++..++...+... ..++++.++...+.+.+|+|+|++|+
T Consensus 16 ~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~ 80 (627)
T KOG0046|consen 16 EELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFV 80 (627)
T ss_pred HHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHH
Confidence 34567888999999 9999999999999999876554 47889999999999999999999985
No 55
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.95 E-value=1.8e-05 Score=31.42 Aligned_cols=27 Identities=30% Similarity=0.882 Sum_probs=24.5
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHH
Q 047967 24 MEDVFKVMDKDGDGRLSHDDLKSYMNC 50 (81)
Q Consensus 24 ~~~~F~~~D~~~~g~i~~~el~~~l~~ 50 (81)
++.+|..+|.+++|.|+..+|..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 578999999999999999999998875
No 56
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=1e-05 Score=50.46 Aligned_cols=62 Identities=10% Similarity=0.148 Sum_probs=54.5
Q ss_pred hHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 20 KDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 20 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
...++..++.++|.+++|.|+..||..++..........++.+-|..++.+.+|.|+|+++.
T Consensus 75 ~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~ 136 (325)
T KOG4223|consen 75 SQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYL 136 (325)
T ss_pred hHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhh
Confidence 56789999999999999999999999999986666666778889999999999999998863
No 57
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.93 E-value=6e-06 Score=50.25 Aligned_cols=60 Identities=13% Similarity=0.195 Sum_probs=47.4
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHc-CCCC--CHHHHHHHHHhhCCCCCCcccccCC
Q 047967 21 DGLMEDVFKVMDKDGDGRLSHDDLKSYMNCA-SFAA--TDDDIEAMIRLGGGDENDGVSSPSF 80 (81)
Q Consensus 21 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~-g~~~--~~~~~~~~~~~~d~~~~~~i~~~eF 80 (81)
...+..+|.+.|.+.+|+|+..|++++++.- ...+ ..++-...|+..|.+++|.|+|++|
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEy 162 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEY 162 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhh
Confidence 4578999999999999999999999988742 1111 2233445788899999999999998
No 58
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.83 E-value=4.4e-05 Score=35.71 Aligned_cols=32 Identities=31% Similarity=0.549 Sum_probs=28.4
Q ss_pred ChHHHHHHHHHhhcCCCCCccCHHHHHHHHHH
Q 047967 19 GKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNC 50 (81)
Q Consensus 19 ~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~ 50 (81)
-..+.+..+|..+|.+++|+|+..||..++..
T Consensus 22 ~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 22 LSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 45667999999999999999999999998864
No 59
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=97.73 E-value=0.0001 Score=43.24 Aligned_cols=29 Identities=28% Similarity=0.492 Sum_probs=17.9
Q ss_pred hHHHHHHHHHhhcCC-CCCccCHHHHHHHH
Q 047967 20 KDGLMEDVFKVMDKD-GDGRLSHDDLKSYM 48 (81)
Q Consensus 20 ~~~~~~~~F~~~D~~-~~g~i~~~el~~~l 48 (81)
++..+...|.++|++ ++|.++.++|..+.
T Consensus 31 EI~~L~~rF~kl~~~~~~g~lt~eef~~i~ 60 (187)
T KOG0034|consen 31 EIERLYERFKKLDRNNGDGYLTKEEFLSIP 60 (187)
T ss_pred HHHHHHHHHHHhccccccCccCHHHHHHHH
Confidence 445566666666666 66666666666655
No 60
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.00025 Score=38.64 Aligned_cols=56 Identities=14% Similarity=0.202 Sum_probs=42.6
Q ss_pred HHHHhhcCCCCCccCHHHHHHHHHHc------CC---C-CCHHHHHHHH----HhhCCCCCCcccccCCC
Q 047967 26 DVFKVMDKDGDGRLSHDDLKSYMNCA------SF---A-ATDDDIEAMI----RLGGGDENDGVSSPSFS 81 (81)
Q Consensus 26 ~~F~~~D~~~~g~i~~~el~~~l~~~------g~---~-~~~~~~~~~~----~~~d~~~~~~i~~~eF~ 81 (81)
..|...|.|++|.|+.-||..++... |. + .++.++..++ +.-|.+++|.|+|-||+
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEfl 140 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFL 140 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHH
Confidence 47999999999999999999988743 32 2 2455665554 44688899999999884
No 61
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=97.51 E-value=0.00021 Score=34.58 Aligned_cols=27 Identities=37% Similarity=0.928 Sum_probs=24.0
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHH
Q 047967 22 GLMEDVFKVMDKDGDGRLSHDDLKSYM 48 (81)
Q Consensus 22 ~~~~~~F~~~D~~~~g~i~~~el~~~l 48 (81)
+.+..+|+.+|++++|.|+..||..++
T Consensus 40 ~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 40 EMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 467778999999999999999998864
No 62
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=7.2e-05 Score=51.65 Aligned_cols=59 Identities=19% Similarity=0.294 Sum_probs=52.6
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 21 DGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 21 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
.-+++.+|+.+|+...|+++...-+.+|...+ +++..+..||..-|.|+||+++.+||+
T Consensus 194 klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfi 252 (1118)
T KOG1029|consen 194 KLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFI 252 (1118)
T ss_pred hhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHH
Confidence 34789999999999999999999999999877 556667899999999999999999984
No 63
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.41 E-value=5.1e-05 Score=30.36 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=18.6
Q ss_pred HHHHHHhhCCCCCCcccccCC
Q 047967 60 IEAMIRLGGGDENDGVSSPSF 80 (81)
Q Consensus 60 ~~~~~~~~d~~~~~~i~~~eF 80 (81)
++.+|..+|.+++|.|+++||
T Consensus 1 l~~~F~~~D~d~DG~is~~E~ 21 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEF 21 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHH
Confidence 457899999999999999886
No 64
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.06 E-value=0.0002 Score=29.84 Aligned_cols=22 Identities=5% Similarity=0.093 Sum_probs=18.6
Q ss_pred HHHHHHHhhCCCCCCcccccCC
Q 047967 59 DIEAMIRLGGGDENDGVSSPSF 80 (81)
Q Consensus 59 ~~~~~~~~~d~~~~~~i~~~eF 80 (81)
+++.+|..+|.+++|.|+++||
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el 22 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEEL 22 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHH
Confidence 4678999999999999999876
No 65
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=97.04 E-value=0.0022 Score=33.46 Aligned_cols=32 Identities=9% Similarity=0.303 Sum_probs=28.7
Q ss_pred hHHHHHHHHHhhcCCCCCccCHHHHHHHHHHc
Q 047967 20 KDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCA 51 (81)
Q Consensus 20 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 51 (81)
....+..+++.+|.+++|.|+..||..++..+
T Consensus 51 ~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 51 DPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred CHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999999988865
No 66
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=96.99 E-value=0.0019 Score=33.53 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=27.5
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHHc
Q 047967 22 GLMEDVFKVMDKDGDGRLSHDDLKSYMNCA 51 (81)
Q Consensus 22 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 51 (81)
+.+..+++.+|.|++|.|++.||..++..+
T Consensus 47 ~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 47 EGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 679999999999999999999999888764
No 67
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.91 E-value=0.0027 Score=29.67 Aligned_cols=32 Identities=22% Similarity=0.476 Sum_probs=25.9
Q ss_pred hHHHHHHHHHhhcCCCCCccCHHHHHHHHHHc
Q 047967 20 KDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCA 51 (81)
Q Consensus 20 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 51 (81)
.......+|+.+|++++|.+..+|+....+.+
T Consensus 19 ~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 19 DDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp -HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 34567889999999999999999999887754
No 68
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=96.85 E-value=0.0037 Score=32.40 Aligned_cols=32 Identities=19% Similarity=0.495 Sum_probs=28.0
Q ss_pred hHHHHHHHHHhhcCCCCCccCHHHHHHHHHHc
Q 047967 20 KDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCA 51 (81)
Q Consensus 20 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 51 (81)
....+..+++.+|.|++|.|+..||..++..+
T Consensus 50 ~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 50 DPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred CHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 35678889999999999999999999888764
No 69
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=96.82 E-value=0.0041 Score=32.18 Aligned_cols=32 Identities=9% Similarity=0.393 Sum_probs=28.3
Q ss_pred hHHHHHHHHHhhcCCCCCccCHHHHHHHHHHc
Q 047967 20 KDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCA 51 (81)
Q Consensus 20 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 51 (81)
..+.+..+|+.+|.+++|.|++.||..++..+
T Consensus 49 t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 49 QDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred CHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 56789999999999999999999998887754
No 70
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.70 E-value=0.0018 Score=33.66 Aligned_cols=34 Identities=18% Similarity=0.402 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCC
Q 047967 20 KDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASF 53 (81)
Q Consensus 20 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~ 53 (81)
..+.+..+|+.+|.+++|.|+..+|..++...++
T Consensus 49 s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 49 DPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 4567899999999999999999999998887653
No 71
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.68 E-value=0.0065 Score=31.75 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=29.2
Q ss_pred ChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcC
Q 047967 19 GKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCAS 52 (81)
Q Consensus 19 ~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g 52 (81)
.....+..++..+|.|+||.|++.|+-..+..+.
T Consensus 45 ~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 45 NDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred CCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 3466789999999999999999999998887653
No 72
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=96.64 E-value=0.0045 Score=33.72 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHH
Q 047967 21 DGLMEDVFKVMDKDGDGRLSHDDLKSYMN 49 (81)
Q Consensus 21 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~ 49 (81)
...+..+|..+|.|++|.||..|+..++.
T Consensus 79 e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 79 EHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 34567799999999999999999999884
No 73
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.64 E-value=0.0031 Score=40.31 Aligned_cols=57 Identities=12% Similarity=0.167 Sum_probs=47.4
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 21 DGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 21 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
...+.=+|.++|.+.+|.++..||+.+-.. -.+.-++.+|..+|...+|.|+-+|+.
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~ld----knE~CikpFfnsCD~~kDg~iS~~EWC 305 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIELD----KNEACIKPFFNSCDTYKDGSISTNEWC 305 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhcc----CchhHHHHHHhhhcccccCccccchhh
Confidence 466777999999999999999999875432 445667899999999999999988863
No 74
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=96.63 E-value=0.0063 Score=31.47 Aligned_cols=32 Identities=16% Similarity=0.468 Sum_probs=28.4
Q ss_pred hHHHHHHHHHhhcCCCCCccCHHHHHHHHHHc
Q 047967 20 KDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCA 51 (81)
Q Consensus 20 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 51 (81)
....+..+|..+|++++|.|+..+|..++..+
T Consensus 50 s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 50 DADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred CHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 45679999999999999999999999888764
No 75
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=96.63 E-value=0.0056 Score=31.59 Aligned_cols=31 Identities=19% Similarity=0.440 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHc
Q 047967 21 DGLMEDVFKVMDKDGDGRLSHDDLKSYMNCA 51 (81)
Q Consensus 21 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 51 (81)
...+..+|..+|.+++|.|++.+|..++..+
T Consensus 50 ~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 50 QKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 5678999999999999999999999888764
No 76
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.51 E-value=0.0035 Score=41.87 Aligned_cols=62 Identities=13% Similarity=0.270 Sum_probs=53.2
Q ss_pred CChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 18 NGKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 18 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
+.+.+.+..-|+...+|..|.|+..--+..+.+.- +.-.|+..||...|.+.||.+++.||+
T Consensus 227 ~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFc 288 (737)
T KOG1955|consen 227 PEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFC 288 (737)
T ss_pred HHHHHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHH
Confidence 34456788889999999999999999999888755 555789999999999999999999985
No 77
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=96.50 E-value=0.0046 Score=29.60 Aligned_cols=32 Identities=19% Similarity=0.491 Sum_probs=27.8
Q ss_pred hHHHHHHHHHhhcCCCCCccCHHHHHHHHHHc
Q 047967 20 KDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCA 51 (81)
Q Consensus 20 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 51 (81)
..+.+..+|..+|.+++|.|+..++..++...
T Consensus 31 ~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 31 PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 45678999999999999999999999888754
No 78
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=96.43 E-value=0.0087 Score=27.46 Aligned_cols=31 Identities=23% Similarity=0.584 Sum_probs=25.7
Q ss_pred CChHHHHHHHHHhhcCCCCCccCHHHHHHHH
Q 047967 18 NGKDGLMEDVFKVMDKDGDGRLSHDDLKSYM 48 (81)
Q Consensus 18 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l 48 (81)
+...+.+..+|..+|.+++|.|+..++..++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 32 GLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred CCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 3445678889999999999999999998765
No 79
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.40 E-value=0.0035 Score=31.81 Aligned_cols=57 Identities=12% Similarity=0.304 Sum_probs=44.2
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHcC--CCCCHHHHHHHHHhhCCC----CCCcccccCC
Q 047967 23 LMEDVFKVMDKDGDGRLSHDDLKSYMNCAS--FAATDDDIEAMIRLGGGD----ENDGVSSPSF 80 (81)
Q Consensus 23 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~g--~~~~~~~~~~~~~~~d~~----~~~~i~~~eF 80 (81)
++..+|..+-. +.+.|+.++|+..|..-. ..++...+..++..+..+ ..+.++++.|
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF 63 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGF 63 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHH
Confidence 46789999965 789999999999998753 346889999999987544 2566776655
No 80
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.40 E-value=0.0052 Score=43.33 Aligned_cols=64 Identities=13% Similarity=0.061 Sum_probs=49.8
Q ss_pred CCChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCH-----HHHHHHHHhhCCCCCCcccccCC
Q 047967 17 SNGKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATD-----DDIEAMIRLGGGDENDGVSSPSF 80 (81)
Q Consensus 17 ~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~-----~~~~~~~~~~d~~~~~~i~~~eF 80 (81)
+.-...+++..|+.+++...|.++++++.+++..+|.+... .++..++...+...-|+|++.+|
T Consensus 742 sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~ 810 (890)
T KOG0035|consen 742 SQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEF 810 (890)
T ss_pred hHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHH
Confidence 33456789999999999999999999999999999988764 23344555556665688888776
No 81
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=96.38 E-value=0.0074 Score=31.45 Aligned_cols=39 Identities=21% Similarity=0.452 Sum_probs=31.8
Q ss_pred hHHHHHHHHHhhcCCCCCccCHHHHHHHHHHc-----CCCCCHH
Q 047967 20 KDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCA-----SFAATDD 58 (81)
Q Consensus 20 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~-----g~~~~~~ 58 (81)
..+.+..+|..+|.+++|.|+.++|..++... |.+++.+
T Consensus 42 ~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~~~~~~ 85 (96)
T smart00027 42 PQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGYPIPAS 85 (96)
T ss_pred CHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCCCCCcc
Confidence 45678899999999999999999999888753 6666543
No 82
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=96.37 E-value=0.0031 Score=46.92 Aligned_cols=53 Identities=30% Similarity=0.437 Sum_probs=45.3
Q ss_pred HHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 28 FKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 28 F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
|+.+|+|+.|.|+..+|+.+|.. ....++.++.-++.....+.+...+|++|+
T Consensus 4063 fkeydpdgkgiiskkdf~kame~-~k~ytqse~dfllscae~dend~~~y~dfv 4115 (5019)
T KOG2243|consen 4063 FKEYDPDGKGIISKKDFHKAMEG-HKHYTQSEIDFLLSCAEADENDMFDYEDFV 4115 (5019)
T ss_pred chhcCCCCCccccHHHHHHHHhc-cccchhHHHHHHHHhhccCccccccHHHHH
Confidence 56679999999999999999985 345678889999999998999999999885
No 83
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=96.31 E-value=0.014 Score=30.21 Aligned_cols=32 Identities=19% Similarity=0.568 Sum_probs=27.9
Q ss_pred hHHHHHHHHHhhcCCCCCccCHHHHHHHHHHc
Q 047967 20 KDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCA 51 (81)
Q Consensus 20 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 51 (81)
+.+.+..+++..|+|++|.|++.+|..++..+
T Consensus 49 ~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 49 EQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred CHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 55779999999999999999999998877753
No 84
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.31 E-value=0.0036 Score=42.36 Aligned_cols=63 Identities=13% Similarity=0.104 Sum_probs=55.7
Q ss_pred CChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCC
Q 047967 18 NGKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSF 80 (81)
Q Consensus 18 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF 80 (81)
+......+.-|..+|.|+.|+++..++.++|+..+.+++.+.+++++...+.+.+|.+...+|
T Consensus 589 ~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~ 651 (680)
T KOG0042|consen 589 PEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREF 651 (680)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHH
Confidence 445567778899999999999999999999999888999999999999999888888887765
No 85
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=95.96 E-value=0.022 Score=29.07 Aligned_cols=32 Identities=13% Similarity=0.336 Sum_probs=28.3
Q ss_pred hHHHHHHHHHhhcCCCCCccCHHHHHHHHHHc
Q 047967 20 KDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCA 51 (81)
Q Consensus 20 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 51 (81)
....+..++..+|.+++|.|+..+|..++...
T Consensus 49 ~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 49 DPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred CHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 46778999999999999999999999988764
No 86
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=95.84 E-value=0.016 Score=30.99 Aligned_cols=33 Identities=18% Similarity=0.429 Sum_probs=27.8
Q ss_pred CChHHHHHHHHHhhcCCCCCccCHHHHHHHHHH
Q 047967 18 NGKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNC 50 (81)
Q Consensus 18 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~ 50 (81)
.-..+.+..+|...|.+++|+++..||.-+|.-
T Consensus 39 ~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 39 GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 445678999999999999999999999988874
No 87
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=95.51 E-value=0.012 Score=37.55 Aligned_cols=58 Identities=10% Similarity=0.118 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHH-cCCCCCHHHHHHHHHhhCCCCCCcccccCC
Q 047967 21 DGLMEDVFKVMDKDGDGRLSHDDLKSYMNC-ASFAATDDDIEAMIRLGGGDENDGVSSPSF 80 (81)
Q Consensus 21 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~-~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF 80 (81)
..-++-+|+.|+.+-||.+.-.+|.-+|+. +| +..-.+-.++...+...+++|.+.+|
T Consensus 295 ~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg--v~~l~v~~lf~~i~q~d~~ki~~~~f 353 (412)
T KOG4666|consen 295 PVIIQYAFKRFSVAEDGISGEHILSLILQVVLG--VEVLRVPVLFPSIEQKDDPKIYASNF 353 (412)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhcC--cceeeccccchhhhcccCcceeHHHH
Confidence 334444555555555555555555544443 12 11122333444454444555554443
No 88
>PF14658 EF-hand_9: EF-hand domain
Probab=95.50 E-value=0.052 Score=26.74 Aligned_cols=33 Identities=18% Similarity=0.435 Sum_probs=29.0
Q ss_pred CChHHHHHHHHHhhcCCCC-CccCHHHHHHHHHH
Q 047967 18 NGKDGLMEDVFKVMDKDGD-GRLSHDDLKSYMNC 50 (81)
Q Consensus 18 ~~~~~~~~~~F~~~D~~~~-g~i~~~el~~~l~~ 50 (81)
..+..+++.+.+.+|+++. |.|+.+.|..+|+.
T Consensus 31 ~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 31 SPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred CCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4456789999999999987 99999999999875
No 89
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=95.49 E-value=0.0034 Score=39.91 Aligned_cols=66 Identities=9% Similarity=0.182 Sum_probs=47.1
Q ss_pred CCCCCChHHHHHHHHHhhcCCCCCccCHHHHH---HHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 14 KSKSNGKDGLMEDVFKVMDKDGDGRLSHDDLK---SYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 14 ~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~---~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
+...++.+..+.-.|..+|+|+++.|...|.+ +++..-. -...-.+++++.+|.++|.+|+++|++
T Consensus 325 r~~e~DeeRvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s--~~rkC~rk~~~yCDlNkDKkISl~Ew~ 393 (421)
T KOG4578|consen 325 RKSEPDEERVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKS--KPRKCSRKFFKYCDLNKDKKISLDEWR 393 (421)
T ss_pred cccCCChhheeeeeeeeecccccCccchhhcchHHHHHHhhc--cHHHHhhhcchhcccCCCceecHHHHh
Confidence 33344433345556999999999999998865 4444322 233456789999999999999998863
No 90
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=95.33 E-value=0.018 Score=40.01 Aligned_cols=61 Identities=11% Similarity=0.360 Sum_probs=53.6
Q ss_pred hHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCC
Q 047967 20 KDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSF 80 (81)
Q Consensus 20 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF 80 (81)
....+..+|...|++.+|.++..+...++..+...+....+..++++.+...++++.+.+|
T Consensus 134 ~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~ 194 (746)
T KOG0169|consen 134 REHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEF 194 (746)
T ss_pred HHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHH
Confidence 4567888999999999999999999999999999999999999999997777888876654
No 91
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.32 E-value=0.011 Score=41.90 Aligned_cols=63 Identities=17% Similarity=0.295 Sum_probs=54.3
Q ss_pred CCChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 17 SNGKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 17 ~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
.+.....+.++|...|.+++|.|+..+.+..+...| ++...+...|...+....+.+++.+|.
T Consensus 278 sp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls~~ef~ 340 (847)
T KOG0998|consen 278 SPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQNTGTLSKDEFA 340 (847)
T ss_pred ChHHHHHHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchhccCcccccccc
Confidence 345567788899999999999999999999998855 666778899999999999999998773
No 92
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=95.29 E-value=0.066 Score=31.16 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCC
Q 047967 20 KDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAA 55 (81)
Q Consensus 20 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~ 55 (81)
....+++...-||+|+||.|.+.|--..++++|+++
T Consensus 5 ~~T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~ 40 (174)
T PF05042_consen 5 NMTVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGI 40 (174)
T ss_pred cccHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCH
Confidence 345677888889999999999999999999998875
No 93
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=95.02 E-value=0.034 Score=35.52 Aligned_cols=57 Identities=11% Similarity=0.021 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHc-CCCCCHHHHHHHHHhhCCCCCCcccc
Q 047967 21 DGLMEDVFKVMDKDGDGRLSHDDLKSYMNCA-SFAATDDDIEAMIRLGGGDENDGVSS 77 (81)
Q Consensus 21 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~-g~~~~~~~~~~~~~~~d~~~~~~i~~ 77 (81)
.+.++.+|..||.+++|.++..+....+.-+ |.+.+.+.++-.+++++...||.+.-
T Consensus 258 sd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge 315 (412)
T KOG4666|consen 258 SDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGE 315 (412)
T ss_pred hhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccch
Confidence 3678999999999999999988888777765 56678888899999999998887654
No 94
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=94.97 E-value=0.044 Score=35.71 Aligned_cols=27 Identities=19% Similarity=0.582 Sum_probs=24.8
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHH
Q 047967 24 MEDVFKVMDKDGDGRLSHDDLKSYMNC 50 (81)
Q Consensus 24 ~~~~F~~~D~~~~g~i~~~el~~~l~~ 50 (81)
+..+|..+|.|++|.|+.+||..++..
T Consensus 359 ~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 359 SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 478999999999999999999998875
No 95
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=94.72 E-value=0.074 Score=35.45 Aligned_cols=30 Identities=27% Similarity=0.370 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHH
Q 047967 21 DGLMEDVFKVMDKDGDGRLSHDDLKSYMNC 50 (81)
Q Consensus 21 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~ 50 (81)
...+.+.|+.+|.++.|+|+...-..++..
T Consensus 463 ~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~ 492 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPKKSGKLSISHWAKCMEN 492 (631)
T ss_pred hhHHHHHHHhcChhhcCeeeHHHHHHHHHH
Confidence 456788999999999999999999888875
No 96
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=94.58 E-value=0.039 Score=36.61 Aligned_cols=61 Identities=18% Similarity=0.345 Sum_probs=45.3
Q ss_pred hHHHHHHHHHhhcCCCCCccCHHHHHHHHHH-------cC-CCCC-HHHHHHHHHhhCCCCCCcccccCC
Q 047967 20 KDGLMEDVFKVMDKDGDGRLSHDDLKSYMNC-------AS-FAAT-DDDIEAMIRLGGGDENDGVSSPSF 80 (81)
Q Consensus 20 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~-------~g-~~~~-~~~~~~~~~~~d~~~~~~i~~~eF 80 (81)
+...+.-+|+.+|.+++|.|+..|++..... .| ..+. ++.+.+++.++-....++|+..+|
T Consensus 349 t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDl 418 (493)
T KOG2562|consen 349 TPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDL 418 (493)
T ss_pred CccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHH
Confidence 4456778899999999999999999865543 23 1222 556677888887777888988776
No 97
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=94.52 E-value=0.0065 Score=39.87 Aligned_cols=47 Identities=15% Similarity=0.219 Sum_probs=31.7
Q ss_pred cCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCC
Q 047967 32 DKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSF 80 (81)
Q Consensus 32 D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF 80 (81)
+.+.+|-|++.|..-.+.-+.. ++...+-.|+++|.|+||-|+.+||
T Consensus 209 ~lg~~GLIsfSdYiFLlTlLS~--p~~~F~IAFKMFD~dgnG~IdkeEF 255 (489)
T KOG2643|consen 209 KLGESGLISFSDYIFLLTLLSI--PERNFRIAFKMFDLDGNGEIDKEEF 255 (489)
T ss_pred EcCCCCeeeHHHHHHHHHHHcc--CcccceeeeeeeecCCCCcccHHHH
Confidence 3456777888877776666553 3334556777788888887777776
No 98
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=94.45 E-value=0.049 Score=33.66 Aligned_cols=57 Identities=14% Similarity=0.388 Sum_probs=46.3
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccC
Q 047967 23 LMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPS 79 (81)
Q Consensus 23 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~e 79 (81)
+.+..=..+|.+++|.++.+||..++--..+.....++..++..-+.+++.+++.++
T Consensus 282 RkkEFeElIDsNhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~ee 338 (362)
T KOG4251|consen 282 RKKEFEELIDSNHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLEE 338 (362)
T ss_pred HHHHHHHHhhcCCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHHH
Confidence 344444567999999999999999977777777788899999999988888888665
No 99
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=94.45 E-value=0.0051 Score=40.34 Aligned_cols=46 Identities=7% Similarity=0.199 Sum_probs=30.7
Q ss_pred CCccCHHHHHHHHHH-cCCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 36 DGRLSHDDLKSYMNC-ASFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 36 ~g~i~~~el~~~l~~-~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
.+.|+..+|+++... .|.++++.-+.-+|.-+|.|+||.++.+||+
T Consensus 402 g~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl 448 (489)
T KOG2643|consen 402 GASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFL 448 (489)
T ss_pred CCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHH
Confidence 345666666665553 3666666666667777788888888887774
No 100
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=93.64 E-value=0.22 Score=28.39 Aligned_cols=57 Identities=9% Similarity=0.131 Sum_probs=40.4
Q ss_pred HHHHHhhcCCCCCccCHHHHHHHHHHcC---CCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 25 EDVFKVMDKDGDGRLSHDDLKSYMNCAS---FAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 25 ~~~F~~~D~~~~g~i~~~el~~~l~~~g---~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
-..|..|.+.+...++...|..+|+..+ -+++...+.-+|..+-..+..+|+|++|+
T Consensus 5 F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~ 64 (154)
T PF05517_consen 5 FKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFL 64 (154)
T ss_dssp HHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHH
T ss_pred HHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHH
Confidence 3445555655667899999999999753 45788888899999766666779998873
No 101
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=93.51 E-value=0.18 Score=34.88 Aligned_cols=58 Identities=16% Similarity=0.253 Sum_probs=45.3
Q ss_pred hHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCccccc
Q 047967 20 KDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSP 78 (81)
Q Consensus 20 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~ 78 (81)
....+.++|+.+|.+.+|.|+..++...|..+-..--.+.+.-+++.++.+++ ..+-+
T Consensus 553 s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e 610 (671)
T KOG4347|consen 553 SLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDRE 610 (671)
T ss_pred HHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccc
Confidence 34567889999999999999999999999876544444556778888888776 55543
No 102
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=92.55 E-value=0.25 Score=33.91 Aligned_cols=36 Identities=36% Similarity=0.562 Sum_probs=31.5
Q ss_pred CCChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcC
Q 047967 17 SNGKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCAS 52 (81)
Q Consensus 17 ~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g 52 (81)
++...+.+..+|.+||.|+||.++..||....+..+
T Consensus 310 s~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P 345 (625)
T KOG1707|consen 310 SPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAP 345 (625)
T ss_pred cHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCC
Confidence 344568899999999999999999999999999764
No 103
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.30 E-value=0.32 Score=31.76 Aligned_cols=39 Identities=13% Similarity=0.199 Sum_probs=33.4
Q ss_pred hHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHH
Q 047967 20 KDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDD 58 (81)
Q Consensus 20 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~ 58 (81)
..+.+++.|+.+|+..+|+|+.+-++.++..+....++.
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~ 345 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEP 345 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCH
Confidence 367899999999999999999999999999988555543
No 104
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=92.14 E-value=0.21 Score=24.78 Aligned_cols=29 Identities=17% Similarity=0.465 Sum_probs=24.1
Q ss_pred hHHHHHHHHHhhcCCCCCccCHHHHHHHHH
Q 047967 20 KDGLMEDVFKVMDKDGDGRLSHDDLKSYMN 49 (81)
Q Consensus 20 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~ 49 (81)
+.+.+..+|+.+ .++.++|+..+|++.|.
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~ 32 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLT 32 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS-
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcC
Confidence 457889999999 57789999999998755
No 105
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=91.85 E-value=0.44 Score=31.88 Aligned_cols=55 Identities=18% Similarity=0.308 Sum_probs=46.5
Q ss_pred HHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCC
Q 047967 25 EDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSF 80 (81)
Q Consensus 25 ~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF 80 (81)
-..|++++++..|.|+...|..+... +..++...+.+++...+..+.+++.-.+|
T Consensus 142 ~~~f~k~~~d~~g~it~~~Fi~~~~~-~~~l~~t~~~~~v~~l~~~~~~yl~q~df 196 (493)
T KOG2562|consen 142 ASTFRKIDGDDTGHITRDKFINYWMR-GLMLTHTRLEQFVNLLIQAGCSYLRQDDF 196 (493)
T ss_pred hhhhhhhccCcCCceeHHHHHHHHHh-hhhHHHHHHHHHHHHHhccCccceecccc
Confidence 46799999999999999999997776 55677788889999999888888877666
No 106
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=91.39 E-value=0.29 Score=26.50 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=19.2
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHH
Q 047967 23 LMEDVFKVMDKDGDGRLSHDDLKSY 47 (81)
Q Consensus 23 ~~~~~F~~~D~~~~g~i~~~el~~~ 47 (81)
=++..|..+|.|+||.||..|...+
T Consensus 89 C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 89 CARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCHHHHccC
Confidence 3677899999999999999987653
No 107
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=91.17 E-value=0.67 Score=31.58 Aligned_cols=31 Identities=29% Similarity=0.596 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHc
Q 047967 21 DGLMEDVFKVMDKDGDGRLSHDDLKSYMNCA 51 (81)
Q Consensus 21 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 51 (81)
...+..+|+.||+..+|.+|.+++..++...
T Consensus 107 Dal~~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 107 DALFEVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred hHHHHHHHHHhcccCCCceehHHHHHHHhcc
Confidence 3457789999999999999999999998864
No 108
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.73 E-value=0.39 Score=32.63 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=30.4
Q ss_pred CCCChHHHHHHHHHhhcCCCCCccCHHHHHHHHHH
Q 047967 16 KSNGKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNC 50 (81)
Q Consensus 16 ~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~ 50 (81)
++.-.+.++..+|...|.+.||.++..||..++.-
T Consensus 259 KSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 259 KSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred hccCchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 34456788999999999999999999999998874
No 109
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.98 E-value=0.96 Score=32.46 Aligned_cols=56 Identities=13% Similarity=0.181 Sum_probs=42.9
Q ss_pred HHHHHHHhhc--CCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCC
Q 047967 23 LMEDVFKVMD--KDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSF 80 (81)
Q Consensus 23 ~~~~~F~~~D--~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF 80 (81)
+-.+.+..|+ +...|+|+...-+.++...| +....+-+||...|.|.||+++..||
T Consensus 14 Er~K~~~qF~~Lkp~~gfitg~qArnfflqS~--LP~~VLaqIWALsDldkDGrmdi~Ef 71 (1118)
T KOG1029|consen 14 ERQKHDAQFGQLKPGQGFITGDQARNFFLQSG--LPTPVLAQIWALSDLDKDGRMDIREF 71 (1118)
T ss_pred HHHHHHHHHhccCCCCCccchHhhhhhHHhcC--CChHHHHHHHHhhhcCccccchHHHH
Confidence 3344444454 25679999999999888877 44466789999999999999998877
No 110
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=89.57 E-value=1.1 Score=26.28 Aligned_cols=56 Identities=20% Similarity=0.219 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHc-------CCCCCHHHHHHHHHhhCCCCCCcccc
Q 047967 21 DGLMEDVFKVMDKDGDGRLSHDDLKSYMNCA-------SFAATDDDIEAMIRLGGGDENDGVSS 77 (81)
Q Consensus 21 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~-------g~~~~~~~~~~~~~~~d~~~~~~i~~ 77 (81)
.+++..+|.++++.+.+.++..|+.++++.= |.-...-|...++... .+.+|.|.-
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~K 157 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSK 157 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeH
Confidence 5789999999999889999999999999962 2222233333344333 345666653
No 111
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=88.28 E-value=0.41 Score=30.71 Aligned_cols=56 Identities=18% Similarity=0.330 Sum_probs=37.4
Q ss_pred HHHHhhcCCCCCccCHHHHHHHHHHc-----CCCCCHHHHH-----------HHHHhhCCCCCCcccccCCC
Q 047967 26 DVFKVMDKDGDGRLSHDDLKSYMNCA-----SFAATDDDIE-----------AMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 26 ~~F~~~D~~~~g~i~~~el~~~l~~~-----g~~~~~~~~~-----------~~~~~~d~~~~~~i~~~eF~ 81 (81)
..|...|.+++|.++-.||...+..- ..+-..+.+. ..++.+|.+.+--|+.++|+
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL 319 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFL 319 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHH
Confidence 45677788999999999999877632 2222222222 14566788888788888774
No 112
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=88.10 E-value=0.7 Score=26.54 Aligned_cols=52 Identities=23% Similarity=0.302 Sum_probs=36.3
Q ss_pred HHHHhhcCCCCCccCHHHHHHHHHHcCCCCC-HHHHHHHHHhhCCCCCCcccc
Q 047967 26 DVFKVMDKDGDGRLSHDDLKSYMNCASFAAT-DDDIEAMIRLGGGDENDGVSS 77 (81)
Q Consensus 26 ~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~-~~~~~~~~~~~d~~~~~~i~~ 77 (81)
++-..|-.|+.|.++..++..++..+..-.. +-.+.-.++-+|.++++.|.-
T Consensus 75 ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~ 127 (189)
T KOG0038|consen 75 RICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGH 127 (189)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccH
Confidence 3445566799999999999998887653332 333455677788888876653
No 113
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=88.05 E-value=0.1 Score=28.47 Aligned_cols=28 Identities=11% Similarity=0.109 Sum_probs=19.2
Q ss_pred CCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 54 AATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 54 ~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
.++++..+.+|..+-.+..|+|.|.||+
T Consensus 3 iLtDeQFdrLW~e~Pvn~~GrLkY~eFL 30 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPVNAKGRLKYQEFL 30 (118)
T ss_dssp ---HHHHHHHHTTS-B-TTS-EEHHHHH
T ss_pred cccHHHhhhhhhhCcCCccCCEeHHHHH
Confidence 3678888999999998889999998874
No 114
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.72 E-value=2.3 Score=21.19 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=33.0
Q ss_pred HHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 047967 26 DVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGG 68 (81)
Q Consensus 26 ~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d 68 (81)
+.+...=++ +=.|+.+-++.++...|.++|+..++++++.+.
T Consensus 27 k~~~k~lk~-NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 27 KQMKKQLKD-NPPINEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred HHHHHHHhh-CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 344444444 347999999999999999999999999988764
No 115
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=87.44 E-value=2.9 Score=32.51 Aligned_cols=55 Identities=20% Similarity=0.327 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHc--CCCCCHHHHHHHHHhhCCCCCCccc
Q 047967 21 DGLMEDVFKVMDKDGDGRLSHDDLKSYMNCA--SFAATDDDIEAMIRLGGGDENDGVS 76 (81)
Q Consensus 21 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~--g~~~~~~~~~~~~~~~d~~~~~~i~ 76 (81)
...++......|++.+|+|+..++.++|-.- -.-.+.+++...|+.++. +..+|+
T Consensus 2295 ~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL~a-~~~yvt 2351 (2399)
T KOG0040|consen 2295 EPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEEIEDAFRALDA-GKPYVT 2351 (2399)
T ss_pred ChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHHHHHHHHHhhc-CCcccc
Confidence 4578999999999999999999999987754 233466688999998887 455554
No 116
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=87.26 E-value=0.74 Score=31.38 Aligned_cols=58 Identities=21% Similarity=0.178 Sum_probs=39.7
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCC-CcccccC
Q 047967 22 GLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDEN-DGVSSPS 79 (81)
Q Consensus 22 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~-~~i~~~e 79 (81)
+.-+++|+..|+.++|.|+.-+++.++...-..+....++..+.......+ .+++|..
T Consensus 179 E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~y 237 (694)
T KOG0751|consen 179 EHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSY 237 (694)
T ss_pred HHHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHH
Confidence 345678888899999999999999988876555555566665555543322 3555543
No 117
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=87.21 E-value=3.3 Score=22.47 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=37.6
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 047967 24 MEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGG 68 (81)
Q Consensus 24 ~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d 68 (81)
+..+|-.+...++...+..++..+|...|.....+.++.++..+.
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~ 47 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK 47 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc
Confidence 445666677777778899999999999999999999999888873
No 118
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=86.73 E-value=2.5 Score=20.68 Aligned_cols=33 Identities=12% Similarity=0.196 Sum_probs=28.8
Q ss_pred CCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 047967 36 DGRLSHDDLKSYMNCASFAATDDDIEAMIRLGG 68 (81)
Q Consensus 36 ~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d 68 (81)
+=-|+.+-++.++...|.++|+..++++++.+-
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~mk 61 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSMK 61 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 347899999999999999999999999988763
No 119
>PRK00523 hypothetical protein; Provisional
Probab=86.68 E-value=2.7 Score=21.03 Aligned_cols=41 Identities=10% Similarity=0.220 Sum_probs=32.5
Q ss_pred HHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 047967 26 DVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLG 67 (81)
Q Consensus 26 ~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 67 (81)
+.|..+=++ +=.|+.+-++.++...|.++|+..++++++.+
T Consensus 28 k~~~k~l~~-NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 28 KMFKKQIRE-NPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred HHHHHHHHH-CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 344444433 34789999999999999999999999998876
No 120
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=86.45 E-value=2.9 Score=29.08 Aligned_cols=49 Identities=22% Similarity=0.451 Sum_probs=37.6
Q ss_pred CChHHHHHHHHHhhcCCCCCccCHHHHHHHHH-HcCCCCCHHHHHHHHHh
Q 047967 18 NGKDGLMEDVFKVMDKDGDGRLSHDDLKSYMN-CASFAATDDDIEAMIRL 66 (81)
Q Consensus 18 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~-~~g~~~~~~~~~~~~~~ 66 (81)
+.....+.++|...|.|.+|.++..|+...-+ .++.+++..++..+-..
T Consensus 191 p~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~v 240 (625)
T KOG1707|consen 191 PRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNV 240 (625)
T ss_pred HHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHH
Confidence 44467889999999999999999999987555 56788876665554443
No 121
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=86.44 E-value=1.6 Score=21.32 Aligned_cols=37 Identities=14% Similarity=0.183 Sum_probs=32.5
Q ss_pred CCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCC
Q 047967 35 GDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDE 71 (81)
Q Consensus 35 ~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~ 71 (81)
.++.++...+...+..-|..++...++..++.++.+|
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 5678999999999998899999999999999998665
No 122
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=86.29 E-value=2.5 Score=22.10 Aligned_cols=57 Identities=9% Similarity=0.202 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHc-------CCC----CCHHHHHHHHHhhCCCCCCcccccCC
Q 047967 21 DGLMEDVFKVMDKDGDGRLSHDDLKSYMNCA-------SFA----ATDDDIEAMIRLGGGDENDGVSSPSF 80 (81)
Q Consensus 21 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~-------g~~----~~~~~~~~~~~~~d~~~~~~i~~~eF 80 (81)
.++++-+|..+. |++|.++...|...|... |.. -.+..++.+|.... ....|+.++|
T Consensus 2 ~dKyRylFslis-d~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~F 69 (90)
T PF09069_consen 2 EDKYRYLFSLIS-DSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQF 69 (90)
T ss_dssp HHHHHHHHHHHS--TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHH
T ss_pred hHHHHHHHHHHc-CCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHH
Confidence 468899999994 889999999998887753 221 24555666666652 3344555444
No 123
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.03 E-value=1.5 Score=31.62 Aligned_cols=63 Identities=19% Similarity=0.346 Sum_probs=51.8
Q ss_pred CCChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 17 SNGKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 17 ~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
.+.....+..+|+..|...+|.|+..+-...+...| +....+-++|...|..+.|.++...|.
T Consensus 6 ~~~~q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~--L~~qvl~qiws~~d~~~~g~l~~q~f~ 68 (847)
T KOG0998|consen 6 SPPGQPLFDQYFKSADPQGDGRITGAEAVAFLSKSG--LPDQVLGQIWSLADSSGKGFLNRQGFY 68 (847)
T ss_pred CCCccchHHHhhhccCcccCCcccHHHhhhhhhccc--cchhhhhccccccccccCCcccccccc
Confidence 344457788999999999999999999999888766 666667789999998888888877763
No 124
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=84.37 E-value=1.7 Score=16.46 Aligned_cols=17 Identities=35% Similarity=0.563 Sum_probs=12.4
Q ss_pred cCCCCCccCHHHHHHHH
Q 047967 32 DKDGDGRLSHDDLKSYM 48 (81)
Q Consensus 32 D~~~~g~i~~~el~~~l 48 (81)
|.+++|.|+..++..+-
T Consensus 1 DvN~DG~vna~D~~~lk 17 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALLK 17 (21)
T ss_dssp -TTSSSSSSHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHH
Confidence 56789999988887543
No 125
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=83.71 E-value=4.4 Score=20.97 Aligned_cols=32 Identities=13% Similarity=0.216 Sum_probs=27.6
Q ss_pred CccCHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 047967 37 GRLSHDDLKSYMNCASFAATDDDIEAMIRLGG 68 (81)
Q Consensus 37 g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d 68 (81)
..|+..||..+.+..+.+++...+..++..+-
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr 44 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILR 44 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 36899999999999999999998888887763
No 126
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=83.40 E-value=0.28 Score=29.48 Aligned_cols=51 Identities=18% Similarity=0.244 Sum_probs=31.6
Q ss_pred HHhhcC-CCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCC
Q 047967 28 FKVMDK-DGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSF 80 (81)
Q Consensus 28 F~~~D~-~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF 80 (81)
|-.+|. ..+|++|..||.-+-. --. +-..-+..++..+|.+.++.|..+||
T Consensus 193 f~qld~~p~d~~~sh~el~pl~a-p~i-pme~c~~~f~e~cd~~nd~~ial~ew 244 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRA-PLI-PMEHCTTRFFETCDLDNDKYIALDEW 244 (259)
T ss_pred eccccCCCccccccccccccccC-Ccc-cHHhhchhhhhcccCCCCCceeHHHh
Confidence 444554 4588888888753211 111 22334567888888888888887765
No 127
>PRK01844 hypothetical protein; Provisional
Probab=83.19 E-value=4.3 Score=20.33 Aligned_cols=41 Identities=12% Similarity=0.077 Sum_probs=32.2
Q ss_pred HHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 047967 26 DVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLG 67 (81)
Q Consensus 26 ~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 67 (81)
+.|..+=++ +=.|+.+-++..+...|.++|+..++++.+.+
T Consensus 27 k~~~k~lk~-NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 27 KYMMNYLQK-NPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred HHHHHHHHH-CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 344444433 33789999999999999999999999998876
No 128
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=82.73 E-value=5.9 Score=21.58 Aligned_cols=43 Identities=9% Similarity=0.211 Sum_probs=34.0
Q ss_pred HHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 047967 26 DVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGG 68 (81)
Q Consensus 26 ~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d 68 (81)
.+|-.+-..++..++..++..+|...|.......+..+++.+.
T Consensus 7 aAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~ 49 (112)
T PTZ00373 7 AAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE 49 (112)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 3444455556677999999999999999999888888887763
No 129
>PLN02228 Phosphoinositide phospholipase C
Probab=79.19 E-value=13 Score=25.94 Aligned_cols=65 Identities=17% Similarity=0.257 Sum_probs=44.3
Q ss_pred CCCCCChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcC--CCCCHHHHHHHHHhhCCC----CCCcccccCC
Q 047967 14 KSKSNGKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCAS--FAATDDDIEAMIRLGGGD----ENDGVSSPSF 80 (81)
Q Consensus 14 ~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g--~~~~~~~~~~~~~~~d~~----~~~~i~~~eF 80 (81)
+.+......++..+|..+-. ++.++.++|...|.... ...+.+.+..++..+... ..+.++.+.|
T Consensus 16 ~~~~~~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF 86 (567)
T PLN02228 16 KEKTREPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAF 86 (567)
T ss_pred CcCCCCCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHH
Confidence 34444567789999998864 36899999999998764 224566678888877533 2244665554
No 130
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=78.89 E-value=5.4 Score=23.54 Aligned_cols=38 Identities=26% Similarity=0.353 Sum_probs=25.4
Q ss_pred cCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCC
Q 047967 32 DKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGG 69 (81)
Q Consensus 32 D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~ 69 (81)
..+.+|+++.++|-+.+..-+..++.+++.+++..-++
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K 63 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDK 63 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCC
Confidence 35789999999999999987888899999999887553
No 131
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=78.89 E-value=5.4 Score=19.50 Aligned_cols=40 Identities=10% Similarity=0.113 Sum_probs=29.2
Q ss_pred hhcCCCCCccCHHHHHHHHHHc----------CCCCCHHHHHHHHHhhCC
Q 047967 30 VMDKDGDGRLSHDDLKSYMNCA----------SFAATDDDIEAMIRLGGG 69 (81)
Q Consensus 30 ~~D~~~~g~i~~~el~~~l~~~----------g~~~~~~~~~~~~~~~d~ 69 (81)
.+|.....+|+.++++.+++.- |.-++..-+.+++.+-..
T Consensus 11 LYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~e~e~ 60 (64)
T PF07879_consen 11 LYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIILEEES 60 (64)
T ss_pred cccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHHHHHh
Confidence 5788889999999999998852 455566666666665543
No 132
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=76.89 E-value=9.7 Score=20.59 Aligned_cols=43 Identities=14% Similarity=0.224 Sum_probs=33.4
Q ss_pred HHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 047967 26 DVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGG 68 (81)
Q Consensus 26 ~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d 68 (81)
.+|-.+-..++..++.+++..+|...|.......+..+++.+.
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~ 47 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE 47 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 3444455556778999999999999999998888887777663
No 133
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.46 E-value=2.8 Score=27.94 Aligned_cols=55 Identities=16% Similarity=0.262 Sum_probs=41.5
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCC
Q 047967 23 LMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSF 80 (81)
Q Consensus 23 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF 80 (81)
.+..+|-.+.+ -+|+|+...-+..|.. .++....+-++|+..|.+.+|.++-+||
T Consensus 445 ~yde~fy~l~p-~~gk~sg~~ak~~mv~--sklpnsvlgkiwklad~d~dg~ld~eef 499 (532)
T KOG1954|consen 445 TYDEIFYTLSP-VNGKLSGRNAKKEMVK--SKLPNSVLGKIWKLADIDKDGMLDDEEF 499 (532)
T ss_pred chHhhhhcccc-cCceeccchhHHHHHh--ccCchhHHHhhhhhhcCCcccCcCHHHH
Confidence 34566666554 4788888887777664 4566677889999999999999988877
No 134
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=75.36 E-value=10 Score=22.28 Aligned_cols=37 Identities=22% Similarity=0.174 Sum_probs=30.1
Q ss_pred CCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCC
Q 047967 33 KDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGG 69 (81)
Q Consensus 33 ~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~ 69 (81)
.|.+|+++.++|.+.+..-+..++.+.+.++...-++
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~K 64 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDDK 64 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCCC
Confidence 4689999999999999866667898888888776543
No 135
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=74.34 E-value=8.9 Score=18.90 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=15.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhh
Q 047967 42 DDLKSYMNCASFAATDDDIEAMIRLG 67 (81)
Q Consensus 42 ~el~~~l~~~g~~~~~~~~~~~~~~~ 67 (81)
.++..++...|..++..++..+++.-
T Consensus 17 ~~m~~if~l~~~~vs~~el~a~lrke 42 (68)
T PF07308_consen 17 DDMIEIFALAGFEVSKAELSAWLRKE 42 (68)
T ss_pred HHHHHHHHHcCCccCHHHHHHHHCCC
Confidence 45666666666666666666666553
No 136
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=73.67 E-value=8.6 Score=18.42 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=25.1
Q ss_pred CccCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 047967 37 GRLSHDDLKSYMNCASFAATDDDIEAMIRLG 67 (81)
Q Consensus 37 g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 67 (81)
-.+|.+||...+..++..++..++..+|...
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 4678889999999998888888887777664
No 137
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=73.65 E-value=4.5 Score=22.39 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=19.9
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHHc
Q 047967 24 MEDVFKVMDKDGDGRLSHDDLKSYMNCA 51 (81)
Q Consensus 24 ~~~~F~~~D~~~~g~i~~~el~~~l~~~ 51 (81)
+.-++..||++++|.|+.-.++.++..+
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 3446888999999999999999887653
No 138
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=72.93 E-value=7.4 Score=17.37 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhcC--CCCCccCHHHHHHHHHH
Q 047967 21 DGLMEDVFKVMDK--DGDGRLSHDDLKSYMNC 50 (81)
Q Consensus 21 ~~~~~~~F~~~D~--~~~g~i~~~el~~~l~~ 50 (81)
+..+..+|..|-. .....++..||+..+..
T Consensus 5 i~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 5 IETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 4567788888863 33578999999998875
No 139
>PLN02223 phosphoinositide phospholipase C
Probab=72.04 E-value=20 Score=24.86 Aligned_cols=53 Identities=11% Similarity=0.038 Sum_probs=38.2
Q ss_pred CCCCCChHHHHHHHHHhhcCCCCCccCHHHHHHHH---HHc-C-CCCCHHHHHHHHHhh
Q 047967 14 KSKSNGKDGLMEDVFKVMDKDGDGRLSHDDLKSYM---NCA-S-FAATDDDIEAMIRLG 67 (81)
Q Consensus 14 ~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l---~~~-g-~~~~~~~~~~~~~~~ 67 (81)
+.......+.++.+|..+- .+.|.++.+.|.+.+ ... | ...+.++++.++..+
T Consensus 8 ~~~~~~~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~ 65 (537)
T PLN02223 8 EMHPANQPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAEL 65 (537)
T ss_pred CCCCCCCcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 3444456778999999995 567899999999988 433 2 346667777777765
No 140
>PLN02222 phosphoinositide phospholipase C 2
Probab=71.79 E-value=17 Score=25.42 Aligned_cols=59 Identities=17% Similarity=0.337 Sum_probs=41.0
Q ss_pred hHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCC--CCCHHHHHHHHHhhCC-CCCCcccccCC
Q 047967 20 KDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASF--AATDDDIEAMIRLGGG-DENDGVSSPSF 80 (81)
Q Consensus 20 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~--~~~~~~~~~~~~~~d~-~~~~~i~~~eF 80 (81)
...++..+|..+-. ++.++.++|...|....- ..+.+.+..++..+.. ...+.++++.|
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF 84 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAF 84 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHH
Confidence 44588999999863 479999999999997642 3466777888877532 12344665554
No 141
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=70.64 E-value=5.8 Score=20.06 Aligned_cols=46 Identities=9% Similarity=0.193 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCC
Q 047967 21 DGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGD 70 (81)
Q Consensus 21 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~ 70 (81)
...++.+...-- ..|+|++.++..+|.... ++.+.+..++..+...
T Consensus 6 ~~~i~~Li~~gK--~~G~lT~~eI~~~L~~~~--~~~e~id~i~~~L~~~ 51 (82)
T PF03979_consen 6 EEAIKKLIEKGK--KKGYLTYDEINDALPEDD--LDPEQIDEIYDTLEDE 51 (82)
T ss_dssp HHHHHHHHHHHH--HHSS-BHHHHHHH-S-S-----HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh--hcCcCCHHHHHHHcCccC--CCHHHHHHHHHHHHHC
Confidence 345666555422 479999999999998544 7778888888887543
No 142
>PLN02230 phosphoinositide phospholipase C 4
Probab=70.63 E-value=35 Score=24.11 Aligned_cols=53 Identities=13% Similarity=0.207 Sum_probs=38.2
Q ss_pred CCCCCChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCC---CCCHHHHHHHHHhh
Q 047967 14 KSKSNGKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASF---AATDDDIEAMIRLG 67 (81)
Q Consensus 14 ~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~---~~~~~~~~~~~~~~ 67 (81)
+........++..+|..+-.++ +.++.++|...|..... ..+.+.+..++..+
T Consensus 21 ~~~~~~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~ 76 (598)
T PLN02230 21 RMTESGPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEV 76 (598)
T ss_pred ccccCCCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHH
Confidence 3444556678999999996443 79999999999998652 23556666777543
No 143
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=70.46 E-value=3.1 Score=27.07 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=24.2
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHH
Q 047967 23 LMEDVFKVMDKDGDGRLSHDDLKSYMNC 50 (81)
Q Consensus 23 ~~~~~F~~~D~~~~g~i~~~el~~~l~~ 50 (81)
=.+++|..+|.|+|-+|+..|++.+|..
T Consensus 371 C~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 371 CSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred HhhhcchhcccCCCceecHHHHhhhhcc
Confidence 3567889999999999999999988874
No 144
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=69.99 E-value=11 Score=20.32 Aligned_cols=42 Identities=10% Similarity=0.126 Sum_probs=24.7
Q ss_pred hhcCCCCCccCHHHHHHHHHHc----------CCCCCHHHHHHHHHhhCCCC
Q 047967 30 VMDKDGDGRLSHDDLKSYMNCA----------SFAATDDDIEAMIRLGGGDE 71 (81)
Q Consensus 30 ~~D~~~~g~i~~~el~~~l~~~----------g~~~~~~~~~~~~~~~d~~~ 71 (81)
.+|+....+|+.++++.+++.- |.-+|..-+.+++.+....+
T Consensus 11 LYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g 62 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGG 62 (107)
T ss_pred ccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCC
Confidence 4566677777777777777641 33345555555555554333
No 145
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=69.79 E-value=11 Score=18.19 Aligned_cols=26 Identities=8% Similarity=0.288 Sum_probs=20.6
Q ss_pred ccCHHHHHHHHHHcCCCCCHHHHHHH
Q 047967 38 RLSHDDLKSYMNCASFAATDDDIEAM 63 (81)
Q Consensus 38 ~i~~~el~~~l~~~g~~~~~~~~~~~ 63 (81)
.|+.++|..+|+.....++.+++.+.
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 58899999999998888888777653
No 146
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=68.69 E-value=17 Score=19.81 Aligned_cols=41 Identities=24% Similarity=0.290 Sum_probs=31.1
Q ss_pred HHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 047967 28 FKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGG 68 (81)
Q Consensus 28 F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d 68 (81)
|-..-..++..++.+++..+|...|.......+..+++.+.
T Consensus 7 yll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~ 47 (113)
T PLN00138 7 YLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK 47 (113)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc
Confidence 33333445667999999999999999888888877777663
No 147
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=67.34 E-value=12 Score=20.46 Aligned_cols=28 Identities=14% Similarity=0.417 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 047967 40 SHDDLKSYMNCASFAATDDDIEAMIRLG 67 (81)
Q Consensus 40 ~~~el~~~l~~~g~~~~~~~~~~~~~~~ 67 (81)
+..|++.++..-+..++.+++++++.-.
T Consensus 81 t~~ElRsIla~e~~~~s~E~l~~Ildiv 108 (114)
T COG1460 81 TPDELRSILAKERVMLSDEELDKILDIV 108 (114)
T ss_pred CHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 5678888888888888888888877654
No 148
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=67.01 E-value=18 Score=19.42 Aligned_cols=29 Identities=14% Similarity=0.283 Sum_probs=26.3
Q ss_pred cCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 047967 39 LSHDDLKSYMNCASFAATDDDIEAMIRLG 67 (81)
Q Consensus 39 i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 67 (81)
++.+++..+|...|..++...+..+++.+
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aL 45 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSAL 45 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHH
Confidence 99999999999999999998888888775
No 149
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=65.76 E-value=15 Score=25.25 Aligned_cols=41 Identities=7% Similarity=0.248 Sum_probs=33.4
Q ss_pred HHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 047967 27 VFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLG 67 (81)
Q Consensus 27 ~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 67 (81)
+|-.|-....+.++..-|..+|+..|..-++..+.+++..+
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~m 131 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEM 131 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHH
Confidence 46666655679999999999999999998888887777664
No 150
>PLN02952 phosphoinositide phospholipase C
Probab=64.78 E-value=42 Score=23.73 Aligned_cols=47 Identities=15% Similarity=0.267 Sum_probs=34.4
Q ss_pred hHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcC--CCCCHHHHHHHHHhh
Q 047967 20 KDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCAS--FAATDDDIEAMIRLG 67 (81)
Q Consensus 20 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g--~~~~~~~~~~~~~~~ 67 (81)
...++..+|..+-.+ .+.++.++|...|.... ...+.+.+..++..+
T Consensus 36 ~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~ 84 (599)
T PLN02952 36 PPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEV 84 (599)
T ss_pred ChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHH
Confidence 457888999988643 46899999999999764 235666666665543
No 151
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=64.63 E-value=21 Score=19.30 Aligned_cols=28 Identities=7% Similarity=0.425 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 047967 40 SHDDLKSYMNCASFAATDDDIEAMIRLG 67 (81)
Q Consensus 40 ~~~el~~~l~~~g~~~~~~~~~~~~~~~ 67 (81)
+.+|++.++......++++++++++..+
T Consensus 80 ~~dElrai~~~~~~~~~~e~l~~ILd~l 107 (112)
T PRK14981 80 TRDELRAIFAKERYTLSPEELDEILDIV 107 (112)
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 4567777777776677777777776654
No 152
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=63.37 E-value=12 Score=29.24 Aligned_cols=41 Identities=10% Similarity=0.174 Sum_probs=36.1
Q ss_pred CCCCChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCC
Q 047967 15 SKSNGKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAA 55 (81)
Q Consensus 15 ~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~ 55 (81)
..++...+.+..++..+|++.+|+|...++...++.+..++
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL 1450 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPL 1450 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCcc
Confidence 56677889999999999999999999999999999875444
No 153
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=62.73 E-value=14 Score=16.70 Aligned_cols=42 Identities=10% Similarity=0.086 Sum_probs=32.4
Q ss_pred CChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 047967 18 NGKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRL 66 (81)
Q Consensus 18 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 66 (81)
......|..+|.. +.+.+..++..+...+| ++...|..+|..
T Consensus 9 ~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF~n 50 (59)
T cd00086 9 PEQLEELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWFQN 50 (59)
T ss_pred HHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHHHH
Confidence 3456678888876 45889999999888877 777788888765
No 154
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=60.40 E-value=13 Score=15.47 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=14.9
Q ss_pred ccCHHHHHHHHHHcCCCCC
Q 047967 38 RLSHDDLKSYMNCASFAAT 56 (81)
Q Consensus 38 ~i~~~el~~~l~~~g~~~~ 56 (81)
.++..+|+..++..|.+.+
T Consensus 3 ~l~~~~Lk~~l~~~gl~~~ 21 (35)
T smart00513 3 KLKVSELKDELKKRGLSTS 21 (35)
T ss_pred cCcHHHHHHHHHHcCCCCC
Confidence 4677889999998887664
No 155
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=59.91 E-value=12 Score=15.66 Aligned_cols=19 Identities=16% Similarity=0.333 Sum_probs=13.6
Q ss_pred ccCHHHHHHHHHHcCCCCC
Q 047967 38 RLSHDDLKSYMNCASFAAT 56 (81)
Q Consensus 38 ~i~~~el~~~l~~~g~~~~ 56 (81)
.++..+|+..++..|.+.+
T Consensus 3 ~l~v~eLk~~l~~~gL~~~ 21 (35)
T PF02037_consen 3 KLTVAELKEELKERGLSTS 21 (35)
T ss_dssp TSHHHHHHHHHHHTTS-ST
T ss_pred cCcHHHHHHHHHHCCCCCC
Confidence 4567788888888887664
No 156
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=56.44 E-value=16 Score=15.50 Aligned_cols=17 Identities=29% Similarity=0.513 Sum_probs=12.3
Q ss_pred CHHHHHHHHHHcCCCCC
Q 047967 40 SHDDLKSYMNCASFAAT 56 (81)
Q Consensus 40 ~~~el~~~l~~~g~~~~ 56 (81)
+.++|+.+|...|++.+
T Consensus 5 s~~~L~~wL~~~gi~~~ 21 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPVP 21 (38)
T ss_pred CHHHHHHHHHHcCCCCC
Confidence 45778888888776654
No 157
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=56.43 E-value=39 Score=23.95 Aligned_cols=62 Identities=16% Similarity=0.343 Sum_probs=43.4
Q ss_pred CCChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHc---C-----CCCCHHHHHHHHHhhCCCCCCcccccC
Q 047967 17 SNGKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCA---S-----FAATDDDIEAMIRLGGGDENDGVSSPS 79 (81)
Q Consensus 17 ~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~---g-----~~~~~~~~~~~~~~~d~~~~~~i~~~e 79 (81)
..+..++++.+|..+|. .+|.++.+++..++... + .+.+.+....++...+.+..+.+.+.+
T Consensus 13 ~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 82 (646)
T KOG0039|consen 13 DCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNED 82 (646)
T ss_pred CCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecc
Confidence 34467889999999997 89999999999887753 1 222344455677777776666655544
No 158
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=55.59 E-value=23 Score=16.97 Aligned_cols=28 Identities=4% Similarity=0.337 Sum_probs=17.8
Q ss_pred ccCHHHHHHHHHHcCC----CCCHHHHHHHHH
Q 047967 38 RLSHDDLKSYMNCASF----AATDDDIEAMIR 65 (81)
Q Consensus 38 ~i~~~el~~~l~~~g~----~~~~~~~~~~~~ 65 (81)
-|..++|...+...|. ..+...+.++..
T Consensus 24 PI~L~el~~~L~~~g~~~~~~~~~~~l~~~lD 55 (64)
T PF09494_consen 24 PINLEELHAWLKASGIGFDRKVDPSKLKEWLD 55 (64)
T ss_pred CccHHHHHHHHHHcCCCccceeCHHHHHHHHH
Confidence 4777778877776666 555555544443
No 159
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=55.40 E-value=63 Score=24.36 Aligned_cols=59 Identities=17% Similarity=0.289 Sum_probs=44.5
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHHc----------CCCCCHHHHHHHHHhhCCCCC----CcccccCC
Q 047967 22 GLMEDVFKVMDKDGDGRLSHDDLKSYMNCA----------SFAATDDDIEAMIRLGGGDEN----DGVSSPSF 80 (81)
Q Consensus 22 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~----------g~~~~~~~~~~~~~~~d~~~~----~~i~~~eF 80 (81)
.++..+|..+-.+..-+++.++|..+|..- -..++...++.++..+..+.+ |.++.+-|
T Consensus 221 ~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf 293 (1189)
T KOG1265|consen 221 PEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGF 293 (1189)
T ss_pred hhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhh
Confidence 467888888888888899999999998852 344577888999999877643 55555544
No 160
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=54.88 E-value=14 Score=22.02 Aligned_cols=36 Identities=11% Similarity=0.263 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCC
Q 047967 21 DGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAAT 56 (81)
Q Consensus 21 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~ 56 (81)
.+.++.+|..||.++=-..+.+++.++|...|+--+
T Consensus 54 Re~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~ 89 (188)
T COG2818 54 REAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRN 89 (188)
T ss_pred HHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhh
Confidence 467999999999988778899999999988775443
No 161
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=53.64 E-value=29 Score=21.21 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=27.7
Q ss_pred CChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHc
Q 047967 18 NGKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCA 51 (81)
Q Consensus 18 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 51 (81)
|.+--.++.+....|.|.+|+|+.-++--+.+..
T Consensus 131 pQTHL~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 131 PQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred chhhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 3344567888999999999999999998888753
No 162
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=53.45 E-value=25 Score=16.65 Aligned_cols=53 Identities=9% Similarity=0.288 Sum_probs=36.5
Q ss_pred CChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccC
Q 047967 18 NGKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPS 79 (81)
Q Consensus 18 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~e 79 (81)
+..++.++.+|.... ..+.+...++.+.|. .+..-+.++++.+. ..|.|.++.
T Consensus 4 ~~~e~YL~~Iy~l~~--~~~~v~~~~iA~~L~-----vs~~tvt~ml~~L~--~~GlV~~~~ 56 (60)
T PF01325_consen 4 ESEEDYLKAIYELSE--EGGPVRTKDIAERLG-----VSPPTVTEMLKRLA--EKGLVEYEP 56 (60)
T ss_dssp CHHHHHHHHHHHHHH--CTSSBBHHHHHHHHT-----S-HHHHHHHHHHHH--HTTSEEEET
T ss_pred cHHHHHHHHHHHHHc--CCCCccHHHHHHHHC-----CChHHHHHHHHHHH--HCCCEEecC
Confidence 335667888888876 678899999987654 55566777888774 355566543
No 163
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=53.09 E-value=31 Score=19.74 Aligned_cols=31 Identities=10% Similarity=0.140 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHc
Q 047967 21 DGLMEDVFKVMDKDGDGRLSHDDLKSYMNCA 51 (81)
Q Consensus 21 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 51 (81)
...+..-....|..+.++++.++|+.++..+
T Consensus 68 Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~i 98 (148)
T PF12486_consen 68 LQQLADRLNQLEEQRGKYMTISELKTAVYQI 98 (148)
T ss_pred HHHHHHHHHHHHHhcCCceeHHHHHHHHHHH
Confidence 3455555666787777889999999877754
No 164
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=52.93 E-value=36 Score=19.35 Aligned_cols=32 Identities=19% Similarity=0.351 Sum_probs=24.8
Q ss_pred cCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCC
Q 047967 39 LSHDDLKSYMNCASFAATDDDIEAMIRLGGGD 70 (81)
Q Consensus 39 i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~ 70 (81)
.+.++.+.+...+..++|++++..++..++.-
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~~~ 58 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIGDI 58 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHhcC
Confidence 46778888877677788888888888887653
No 165
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=52.55 E-value=29 Score=17.22 Aligned_cols=40 Identities=13% Similarity=0.416 Sum_probs=24.3
Q ss_pred CCCccCHHHHHHHHHHc---------CCCCCHHHHHHHHHhhCCCCCCcccccCC
Q 047967 35 GDGRLSHDDLKSYMNCA---------SFAATDDDIEAMIRLGGGDENDGVSSPSF 80 (81)
Q Consensus 35 ~~g~i~~~el~~~l~~~---------g~~~~~~~~~~~~~~~d~~~~~~i~~~eF 80 (81)
..|++..+|++.++... ....+..+++++.. +|+|+-++|
T Consensus 27 ~~Gkv~~ee~n~~~e~~p~~~~~lAk~~G~t~~~l~~~~~------~Gkit~~~~ 75 (75)
T TIGR02675 27 ASGKLRGEEINSLLEALPGALQALAKAMGVTRGELRKMLS------DGKLTADVI 75 (75)
T ss_pred HcCcccHHHHHHHHHHhHHHHHHHHHHhCCCHHHHHHHHH------CCCCccccC
Confidence 47899999999887642 12244444444432 556666654
No 166
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.42 E-value=31 Score=19.78 Aligned_cols=52 Identities=19% Similarity=0.425 Sum_probs=32.1
Q ss_pred HHHHHhhcCCCCCccCHHHHHHHHHHc--CCCCCHHHHHHHHHhhCCCCCCccccc
Q 047967 25 EDVFKVMDKDGDGRLSHDDLKSYMNCA--SFAATDDDIEAMIRLGGGDENDGVSSP 78 (81)
Q Consensus 25 ~~~F~~~D~~~~g~i~~~el~~~l~~~--g~~~~~~~~~~~~~~~d~~~~~~i~~~ 78 (81)
--+|+..+. ||.++..|..+...-+ .+.++..++..++.....-+...+++.
T Consensus 33 ~Llf~Vm~A--DG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y 86 (148)
T COG4103 33 ALLFHVMEA--DGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLY 86 (148)
T ss_pred HHHHHHHhc--ccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHH
Confidence 367888775 5778887766543322 455777777777776654444444443
No 167
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=51.46 E-value=30 Score=17.10 Aligned_cols=30 Identities=13% Similarity=0.124 Sum_probs=22.0
Q ss_pred ccCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 047967 38 RLSHDDLKSYMNCASFAATDDDIEAMIRLG 67 (81)
Q Consensus 38 ~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 67 (81)
.-+-+||...|...|+..++..+..-++.+
T Consensus 19 i~sQ~eL~~~L~~~Gi~vTQaTiSRDLkeL 48 (70)
T PF01316_consen 19 ISSQEELVELLEEEGIEVTQATISRDLKEL 48 (70)
T ss_dssp --SHHHHHHHHHHTT-T--HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCcchhHHHHHHHHc
Confidence 557889999999999999999888877775
No 168
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=50.58 E-value=58 Score=20.07 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=29.7
Q ss_pred CCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 047967 33 KDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLG 67 (81)
Q Consensus 33 ~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 67 (81)
.+++|.+....|.+-+.++-.+++..++..+-+.+
T Consensus 162 G~gegQVpL~kL~~~l~KLp~~lt~~ev~~v~~RL 196 (224)
T PF13829_consen 162 GNGEGQVPLRKLQKTLMKLPRNLTKAEVDAVNKRL 196 (224)
T ss_pred cCCCCceeHHHHHHHHHhCCccCCHHHHHHHHHHH
Confidence 35789999999999999999999998887766554
No 169
>PRK09462 fur ferric uptake regulator; Provisional
Probab=49.72 E-value=45 Score=18.59 Aligned_cols=33 Identities=9% Similarity=-0.034 Sum_probs=26.8
Q ss_pred CCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 047967 35 GDGRLSHDDLKSYMNCASFAATDDDIEAMIRLG 67 (81)
Q Consensus 35 ~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 67 (81)
.++.+|.+++...++.-+.+++..-+.+.+..+
T Consensus 30 ~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L 62 (148)
T PRK09462 30 DNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQF 62 (148)
T ss_pred CCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHH
Confidence 457899999999999888888877777776665
No 170
>PLN02952 phosphoinositide phospholipase C
Probab=49.54 E-value=34 Score=24.16 Aligned_cols=45 Identities=9% Similarity=0.093 Sum_probs=29.4
Q ss_pred CCCccCHHHHHHHHHHcCC--CCCHHHHHHHHHhhCCCCCCcccccCC
Q 047967 35 GDGRLSHDDLKSYMNCASF--AATDDDIEAMIRLGGGDENDGVSSPSF 80 (81)
Q Consensus 35 ~~g~i~~~el~~~l~~~g~--~~~~~~~~~~~~~~d~~~~~~i~~~eF 80 (81)
+.|.++++++..+.+.+-. .....++..+|..+..+ .+.|+.++|
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l 59 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQL 59 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHH
Confidence 3578888888776665431 22566788888888643 356776655
No 171
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=47.51 E-value=58 Score=19.88 Aligned_cols=36 Identities=19% Similarity=0.127 Sum_probs=30.2
Q ss_pred CCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 047967 33 KDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGG 68 (81)
Q Consensus 33 ~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d 68 (81)
.|.+|+.+..++...++..+..++.+-+..+...-+
T Consensus 54 lD~~Gwa~i~~l~~~~~k~~~~~~~~~l~~iV~~d~ 89 (211)
T COG1859 54 LDEEGWADIDELLEGLRKAGRWLTRELLLAVVATDD 89 (211)
T ss_pred eccccchhHHHHHHHHHhhccCCCHHHHHHHHhcCC
Confidence 578999999999999999999999887776666544
No 172
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=47.34 E-value=19 Score=18.19 Aligned_cols=44 Identities=9% Similarity=0.097 Sum_probs=24.0
Q ss_pred HHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccc
Q 047967 28 FKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSS 77 (81)
Q Consensus 28 F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~ 77 (81)
+..+-.+..+.++..+.+..++ ......+.+++.-+. .-|.|+|
T Consensus 43 l~~w~~n~~~~lt~~~~~~~i~----~~d~~~~~ri~~FL~--~~G~INf 86 (86)
T PF04433_consen 43 LAEWRKNPNKYLTKTDARKLIK----GIDVNKIRRIYDFLE--RWGLINF 86 (86)
T ss_dssp HHHHHHHTTS---HHHHHHHTT----SSSHHHHHHHHHHHH--HTTSSSS
T ss_pred HHHHHHCCCCcccHHHHHHHcc----ccCHHHHHHHHHHHH--HcCccCC
Confidence 4554556778888888877666 245555666665553 2344443
No 173
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=47.07 E-value=47 Score=17.96 Aligned_cols=30 Identities=17% Similarity=0.371 Sum_probs=27.1
Q ss_pred ccCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 047967 38 RLSHDDLKSYMNCASFAATDDDIEAMIRLG 67 (81)
Q Consensus 38 ~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 67 (81)
.|+-+++..+|...|..+....+..++..+
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL 45 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAAL 45 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 899999999999999999988888888776
No 174
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=45.67 E-value=11 Score=15.54 Aligned_cols=17 Identities=12% Similarity=0.163 Sum_probs=8.8
Q ss_pred HHHHhhCCCCCCccccc
Q 047967 62 AMIRLGGGDENDGVSSP 78 (81)
Q Consensus 62 ~~~~~~d~~~~~~i~~~ 78 (81)
.++..-|.+++.+|+.+
T Consensus 3 ~LL~qEDTDgn~qITIe 19 (30)
T PF07492_consen 3 SLLEQEDTDGNFQITIE 19 (30)
T ss_pred hHhhccccCCCcEEEEe
Confidence 34444555555555544
No 175
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=45.27 E-value=57 Score=18.44 Aligned_cols=35 Identities=11% Similarity=0.227 Sum_probs=29.4
Q ss_pred CCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCC
Q 047967 35 GDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGG 69 (81)
Q Consensus 35 ~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~ 69 (81)
.+...+.+||...|+..|..+++..+.+.++.+..
T Consensus 13 ~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~elgl 47 (146)
T TIGR01529 13 EEKISTQEELVALLKAEGIEVTQATVSRDLRELGA 47 (146)
T ss_pred cCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcCC
Confidence 45577999999999999999999999888887643
No 176
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=45.16 E-value=44 Score=17.13 Aligned_cols=26 Identities=15% Similarity=0.405 Sum_probs=15.5
Q ss_pred cCHHHHHHHHHHcCCCCCHHHHHHHH
Q 047967 39 LSHDDLKSYMNCASFAATDDDIEAMI 64 (81)
Q Consensus 39 i~~~el~~~l~~~g~~~~~~~~~~~~ 64 (81)
|+.+++..+-+-....++++++..+.
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~ 26 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFA 26 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 35566666666666667766655433
No 177
>PRK00441 argR arginine repressor; Provisional
Probab=44.91 E-value=59 Score=18.51 Aligned_cols=34 Identities=12% Similarity=0.126 Sum_probs=28.8
Q ss_pred CCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 047967 35 GDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGG 68 (81)
Q Consensus 35 ~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d 68 (81)
..+..+.++|...|...|+..|+.-+.+-+..+.
T Consensus 15 ~~~~~~q~eL~~~L~~~G~~vSqaTisRDl~~L~ 48 (149)
T PRK00441 15 SKEIETQEELAEELKKMGFDVTQATVSRDIKELK 48 (149)
T ss_pred HcCCCcHHHHHHHHHhcCCCcCHHHHHHHHHHcC
Confidence 3567899999999999999999998888777753
No 178
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=44.66 E-value=19 Score=18.37 Aligned_cols=43 Identities=12% Similarity=0.194 Sum_probs=31.3
Q ss_pred CCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccC
Q 047967 36 DGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPS 79 (81)
Q Consensus 36 ~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~e 79 (81)
.|+-...+|-..|..+|..+-+..++-+++.+.. +.|.+.+++
T Consensus 38 S~k~~~p~fPkFLn~LGteIiEnAVefiLrSMtR-~tgF~E~~d 80 (88)
T PF15144_consen 38 SGKNPEPDFPKFLNLLGTEIIENAVEFILRSMTR-STGFMEFED 80 (88)
T ss_pred cCCCCCCchHHHHHHhhHHHHHHHHHHHHHHhhc-ccCceecCC
Confidence 4555556888888888877777778888888864 467666653
No 179
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=44.54 E-value=32 Score=15.33 Aligned_cols=21 Identities=10% Similarity=0.346 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHcCCCCCHHHH
Q 047967 40 SHDDLKSYMNCASFAATDDDI 60 (81)
Q Consensus 40 ~~~el~~~l~~~g~~~~~~~~ 60 (81)
+.+++..+-+..|+.+|.+++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 667788888888888886654
No 180
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=44.31 E-value=43 Score=17.08 Aligned_cols=20 Identities=0% Similarity=-0.032 Sum_probs=11.8
Q ss_pred HHHHHHHHcCCCCCHHHHHH
Q 047967 43 DLKSYMNCASFAATDDDIEA 62 (81)
Q Consensus 43 el~~~l~~~g~~~~~~~~~~ 62 (81)
|+-.+|+.+|.+++.++..-
T Consensus 21 EIL~ALrkLge~Ls~eE~~F 40 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAF 40 (78)
T ss_dssp HHHHHHHHTT----HHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHH
Confidence 56678889999999887543
No 181
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=43.93 E-value=41 Score=16.46 Aligned_cols=45 Identities=16% Similarity=0.218 Sum_probs=24.6
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHc----CCCCCHHHHHHHHHhh
Q 047967 23 LMEDVFKVMDKDGDGRLSHDDLKSYMNCA----SFAATDDDIEAMIRLG 67 (81)
Q Consensus 23 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~----g~~~~~~~~~~~~~~~ 67 (81)
.+..+...++....-.+-..+|+.++..+ |...+++-+..+|..|
T Consensus 24 ~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 24 HLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 34444554453333345566777777765 6666677677777654
No 182
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=43.77 E-value=46 Score=17.28 Aligned_cols=45 Identities=11% Similarity=0.017 Sum_probs=28.7
Q ss_pred CCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCC
Q 047967 36 DGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSF 80 (81)
Q Consensus 36 ~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF 80 (81)
+-.|.-.+++..|...-.-.+..+...+=..+|.-.+++|+.-||
T Consensus 20 r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeF 64 (85)
T PF02761_consen 20 RTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEF 64 (85)
T ss_dssp -SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHH
T ss_pred CeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhh
Confidence 457889999998887543333345555666678888888875443
No 183
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=43.38 E-value=47 Score=17.00 Aligned_cols=29 Identities=10% Similarity=0.345 Sum_probs=19.6
Q ss_pred ccCHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 047967 38 RLSHDDLKSYMNCASFAATDDDIEAMIRL 66 (81)
Q Consensus 38 ~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 66 (81)
.|+.+++..+.+-..+.++++++..+...
T Consensus 2 ~i~~e~i~~la~La~l~l~~ee~~~~~~~ 30 (95)
T PRK00034 2 AITREEVKHLAKLARLELSEEELEKFAGQ 30 (95)
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 36777788777777777877766554433
No 184
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=43.17 E-value=53 Score=23.09 Aligned_cols=33 Identities=12% Similarity=0.222 Sum_probs=27.1
Q ss_pred ChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHc
Q 047967 19 GKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCA 51 (81)
Q Consensus 19 ~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 51 (81)
...+.++.+....+.|.+|.|++++|..++..+
T Consensus 54 ~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 54 FVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred hhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 346788889999999999999999999866543
No 185
>KOG2351 consensus RNA polymerase II, fourth largest subunit [Transcription]
Probab=43.11 E-value=44 Score=18.73 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=17.5
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 047967 41 HDDLKSYMNCASFAATDDDIEAMIRLG 67 (81)
Q Consensus 41 ~~el~~~l~~~g~~~~~~~~~~~~~~~ 67 (81)
.+|-+..+.+++.+++++++++++..+
T Consensus 101 aEEAkaLvPSL~nkidD~~le~iL~dl 127 (134)
T KOG2351|consen 101 AEEAKALVPSLENKIDDDELEQILKDL 127 (134)
T ss_pred HHHHHHhccccccccCHHHHHHHHHHH
Confidence 344455555666777777777777665
No 186
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=42.94 E-value=54 Score=17.50 Aligned_cols=33 Identities=6% Similarity=0.028 Sum_probs=26.3
Q ss_pred CCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 047967 35 GDGRLSHDDLKSYMNCASFAATDDDIEAMIRLG 67 (81)
Q Consensus 35 ~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 67 (81)
.+-.++.+++..+++..|.......+..+.+.+
T Consensus 14 ~~~~~Tae~I~~ilkAaGveve~~~~~~f~~~L 46 (103)
T cd05831 14 DGIEITADNINALLKAAGVNVEPYWPGLFAKAL 46 (103)
T ss_pred CCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 344799999999999999988877777666555
No 187
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=42.83 E-value=35 Score=15.32 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=14.7
Q ss_pred ccCHHHHHHHHHHcCCCC
Q 047967 38 RLSHDDLKSYMNCASFAA 55 (81)
Q Consensus 38 ~i~~~el~~~l~~~g~~~ 55 (81)
.+|-.||+.-|..+|.+.
T Consensus 5 ~LSd~eL~~~L~~~G~~~ 22 (44)
T smart00540 5 RLSDAELRAELKQYGLPP 22 (44)
T ss_pred HcCHHHHHHHHHHcCCCC
Confidence 577889999999988664
No 188
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=41.89 E-value=55 Score=17.28 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 047967 21 DGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRL 66 (81)
Q Consensus 21 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 66 (81)
.++...++..+-......=+...|..+|+..+.....+.++.++..
T Consensus 49 ~Eq~~qmL~~W~~~~G~~a~~~~Li~aLr~~~l~~~Ad~I~~~l~~ 94 (97)
T cd08316 49 AEQKVQLLRAWYQSHGKTGAYRTLIKTLRKAKLCTKADKIQDIIEA 94 (97)
T ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHHHHHccchhHHHHHHHHHHh
Confidence 4555555555543322233567888888888877777777766543
No 189
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=41.46 E-value=28 Score=17.23 Aligned_cols=29 Identities=10% Similarity=0.268 Sum_probs=19.7
Q ss_pred hHHHHHHHHHhhcCCCCCccCHHHHHHHHHHc
Q 047967 20 KDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCA 51 (81)
Q Consensus 20 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 51 (81)
....+...|..| ..++|+.++|.+-++.+
T Consensus 26 ~~~~l~~~Y~~~---k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 26 KMDLLQKHYEEF---KKKKISREEFVRKLRQI 54 (70)
T ss_pred HHHHHHHHHHHH---HHCCCCHHHHHHHHHHH
Confidence 344444444444 46799999999988864
No 190
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=38.84 E-value=26 Score=20.34 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=23.4
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 047967 22 GLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLG 67 (81)
Q Consensus 22 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 67 (81)
.++..++..+-......++..+|...+-- |+.+|.+++...+..+
T Consensus 85 ~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cGV-GV~VT~E~I~~~V~~~ 129 (164)
T PF04558_consen 85 LQLDAALKYLKSNPSEPIDVAEFEKACGV-GVVVTPEQIEAAVEKY 129 (164)
T ss_dssp HHHHHHHHHHHHHGG-G--HHHHHHTTTT-T----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHcCC-CeEECHHHHHHHHHHH
Confidence 34455555444333356888888876654 7888888887766554
No 191
>PTZ00315 2'-phosphotransferase; Provisional
Probab=38.32 E-value=92 Score=22.08 Aligned_cols=38 Identities=13% Similarity=0.126 Sum_probs=30.8
Q ss_pred cCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCC
Q 047967 32 DKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGG 69 (81)
Q Consensus 32 D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~ 69 (81)
..|.+|+++..+|.+....-+..++.+.++.++..=++
T Consensus 399 ~ld~~Gwv~vd~LL~~~~~~~~~~t~e~i~~VV~~ndK 436 (582)
T PTZ00315 399 PITSNGYVLLDDILRQPPMRNDPVSVQDVARVVRDSDK 436 (582)
T ss_pred CcCCCCCEEHHHHHHHHHhcCCCCCHHHHHHHHHcCCC
Confidence 35789999999999988876777888888888876443
No 192
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=37.68 E-value=46 Score=19.96 Aligned_cols=24 Identities=33% Similarity=0.635 Sum_probs=19.7
Q ss_pred HHhhcCCCCCccCHHHHHHHHHHc
Q 047967 28 FKVMDKDGDGRLSHDDLKSYMNCA 51 (81)
Q Consensus 28 F~~~D~~~~g~i~~~el~~~l~~~ 51 (81)
..-+|.|++|.++.+|+..+....
T Consensus 56 l~~~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 56 LEGLDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred HHhhhhcccCCCCHHHHHHHHHHH
Confidence 446789999999999999877754
No 193
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=37.17 E-value=47 Score=15.21 Aligned_cols=31 Identities=3% Similarity=0.207 Sum_probs=23.2
Q ss_pred CCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCC
Q 047967 35 GDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGD 70 (81)
Q Consensus 35 ~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~ 70 (81)
..|.|+..+++..+. ++...+-.++..+|..
T Consensus 7 ~~~~itv~~~rd~lg-----~sRK~ai~lLE~lD~~ 37 (50)
T PF09107_consen 7 KNGEITVAEFRDLLG-----LSRKYAIPLLEYLDRE 37 (50)
T ss_dssp TTSSBEHHHHHHHHT-----S-HHHHHHHHHHHHHT
T ss_pred cCCcCcHHHHHHHHC-----ccHHHHHHHHHHHhcc
Confidence 378999999998774 6667777788887754
No 194
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.13 E-value=37 Score=20.06 Aligned_cols=41 Identities=15% Similarity=0.185 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHH
Q 047967 21 DGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIE 61 (81)
Q Consensus 21 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~ 61 (81)
.+.++++|..||...=-..+.+++.+.+...+.--+...++
T Consensus 52 r~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~ 92 (179)
T TIGR00624 52 RENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIE 92 (179)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHH
Confidence 46789999999987666778888888888766444443343
No 195
>PRK04280 arginine repressor; Provisional
Probab=36.78 E-value=81 Score=17.95 Aligned_cols=31 Identities=16% Similarity=0.154 Sum_probs=25.4
Q ss_pred ccCHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 047967 38 RLSHDDLKSYMNCASFAATDDDIEAMIRLGG 68 (81)
Q Consensus 38 ~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d 68 (81)
.=+-+||...|...|+..|+..+.+-++++.
T Consensus 18 I~tQeeL~~~L~~~Gi~vTQATiSRDikeL~ 48 (148)
T PRK04280 18 IETQDELVDRLREEGFNVTQATVSRDIKELH 48 (148)
T ss_pred CCCHHHHHHHHHHcCCCeehHHHHHHHHHcC
Confidence 3467899999999999999988877777653
No 196
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=36.63 E-value=72 Score=17.11 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=24.7
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 047967 22 GLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLG 67 (81)
Q Consensus 22 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 67 (81)
..+..-|..+-. +|.+...+|..|+- .+-+.+-..+++..+
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CIG---M~dSkeFA~eLFdAL 70 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECIG---MKDSKEFAGELFDAL 70 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHHT-----S-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhcC---CcccHHHHHHHHHHH
Confidence 455666776665 89999999987764 344555555555543
No 197
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=36.47 E-value=68 Score=16.78 Aligned_cols=45 Identities=7% Similarity=0.087 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047967 21 DGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIR 65 (81)
Q Consensus 21 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~ 65 (81)
.+....++..+-......-+...|..+|..++.+...+.++..+.
T Consensus 47 ~eq~~qmL~~W~~~~G~~At~~~L~~aL~~~~~~~~Ae~I~~~l~ 91 (96)
T cd08315 47 REQLYQMLLTWVNKTGRKASVNTLLDALEAIGLRLAKESIQDELI 91 (96)
T ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHcccccHHHHHHHHHH
Confidence 455666666655433334567888888898888888777766543
No 198
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=36.29 E-value=66 Score=16.60 Aligned_cols=14 Identities=21% Similarity=0.188 Sum_probs=5.7
Q ss_pred CccCHHHHHHHHHH
Q 047967 37 GRLSHDDLKSYMNC 50 (81)
Q Consensus 37 g~i~~~el~~~l~~ 50 (81)
|+.+...|.+.|..
T Consensus 61 Gy~N~KqllkrLN~ 74 (87)
T PF13331_consen 61 GYGNAKQLLKRLNM 74 (87)
T ss_pred CCCCHHHHHHHHHH
Confidence 34444444444443
No 199
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=35.82 E-value=45 Score=14.52 Aligned_cols=30 Identities=17% Similarity=0.357 Sum_probs=20.4
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHhhCCCCCC
Q 047967 44 LKSYMNCASFAATDDDIEAMIRLGGGDEND 73 (81)
Q Consensus 44 l~~~l~~~g~~~~~~~~~~~~~~~d~~~~~ 73 (81)
|-.+|...+...+..++++++..-..--||
T Consensus 3 Ld~~L~~~~~~~sr~~a~~~I~~g~V~VNg 32 (48)
T PF01479_consen 3 LDKFLSRLGLASSRSEARRLIKQGRVKVNG 32 (48)
T ss_dssp HHHHHHHTTSSSSHHHHHHHHHTTTEEETT
T ss_pred HHHHHHHcCCcCCHHHHHHhcCCCEEEECC
Confidence 345667778888888888888875444333
No 200
>PRK03341 arginine repressor; Provisional
Probab=35.67 E-value=94 Score=18.17 Aligned_cols=34 Identities=12% Similarity=0.118 Sum_probs=29.0
Q ss_pred CCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 047967 35 GDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGG 68 (81)
Q Consensus 35 ~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d 68 (81)
..+..+-+||...|...|+..++..+.+-++.+.
T Consensus 26 ~~~i~tQ~eL~~~L~~~Gi~vTQaTiSRDl~eL~ 59 (168)
T PRK03341 26 RQSVRSQAELAALLADEGIEVTQATLSRDLDELG 59 (168)
T ss_pred HCCCccHHHHHHHHHHcCCcccHHHHHHHHHHhc
Confidence 4568899999999999999999998888777654
No 201
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=35.57 E-value=82 Score=17.49 Aligned_cols=44 Identities=9% Similarity=0.180 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhhcCCCCCccCHHHHHHHHHHc-CCCCCHHHHHHHHHh
Q 047967 20 KDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCA-SFAATDDDIEAMIRL 66 (81)
Q Consensus 20 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~-g~~~~~~~~~~~~~~ 66 (81)
...++..+|+.|- ++.|+.+.+-.++.+. |..+|...+.-+...
T Consensus 35 f~~Kl~~Il~mFl---~~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~ 79 (122)
T PF06648_consen 35 FLDKLIKILKMFL---NDEIDVEDMYNLFGAVDGLKLTRSQIDYLYNR 79 (122)
T ss_pred HHHHHHHHHHHHH---hCCCCHHHHHHHHhcccHhhcCHHHHHHHHHH
Confidence 3578888888888 4589999999888876 478887766554443
No 202
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=35.54 E-value=74 Score=16.92 Aligned_cols=39 Identities=8% Similarity=0.090 Sum_probs=24.0
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHH
Q 047967 22 GLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEA 62 (81)
Q Consensus 22 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~ 62 (81)
+.+.++...+=...+|.++..+++.+....| +++.++-.
T Consensus 48 ~~~~~~i~~~~~~~~~~~~~~~i~~~r~~~g--ltq~~lA~ 86 (127)
T TIGR03830 48 KRNSAALADFYRKVDGLLTPPEIRRIRKKLG--LSQREAAE 86 (127)
T ss_pred HHHHHHHHHHHHHccCCcCHHHHHHHHHHcC--CCHHHHHH
Confidence 3444444334346678888888888877765 55544443
No 203
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=34.94 E-value=87 Score=17.59 Aligned_cols=47 Identities=13% Similarity=0.112 Sum_probs=33.0
Q ss_pred CChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 047967 18 NGKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGG 68 (81)
Q Consensus 18 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d 68 (81)
..+...+.+++.. .++.+|.+++...++.-+.+++...+.+.+..+.
T Consensus 20 T~qR~~vl~~L~~----~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~ 66 (145)
T COG0735 20 TPQRLAVLELLLE----ADGHLSAEELYEELREEGPGISLATVYRTLKLLE 66 (145)
T ss_pred CHHHHHHHHHHHh----cCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHH
Confidence 3444445555442 3445999999999999888888877777776653
No 204
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=34.50 E-value=55 Score=15.18 Aligned_cols=31 Identities=29% Similarity=0.524 Sum_probs=21.1
Q ss_pred CCCccCHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047967 35 GDGRLSHDDLKSYMNCASFAATDDDIEAMIR 65 (81)
Q Consensus 35 ~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~ 65 (81)
.+|.|+..||..-+...-.--+..++..++.
T Consensus 20 a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~~ 50 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAAYAARTRGELDALFA 50 (53)
T ss_pred HCCCCCHHHHHHHHHHHHhcCcHHHHHHHHc
Confidence 3799999999987766544455555555543
No 205
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=33.99 E-value=60 Score=15.43 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=23.1
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHHcCCCC
Q 047967 24 MEDVFKVMDKDGDGRLSHDDLKSYMNCASFAA 55 (81)
Q Consensus 24 ~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~ 55 (81)
...+++.++.+...-++..+...-....|.+.
T Consensus 6 ~~~v~~~l~t~~~~GLs~~ev~~r~~~~G~N~ 37 (69)
T PF00690_consen 6 VEEVLKRLNTSSSQGLSSEEVEERRKKYGPNE 37 (69)
T ss_dssp HHHHHHHHTTBTSSBBTHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHCcCCCCCCCHHHHHHHHHhccccc
Confidence 34566677766777788888888888877553
No 206
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=33.05 E-value=54 Score=15.64 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=14.7
Q ss_pred HHHhhcCCCCCccCHHHHHH
Q 047967 27 VFKVMDKDGDGRLSHDDLKS 46 (81)
Q Consensus 27 ~F~~~D~~~~g~i~~~el~~ 46 (81)
+...++.+++|+|+...+..
T Consensus 20 L~~~~~~~~~g~Vpi~~i~~ 39 (61)
T PF05383_consen 20 LRSQMDSNPDGWVPISTILS 39 (61)
T ss_dssp HHHHHCTTTTTBEEHHHHTT
T ss_pred HHHHHHhcCCCcEeHHHHHc
Confidence 44566777789999887765
No 207
>PF05901 Excalibur: Excalibur calcium-binding domain; InterPro: IPR008613 Extracellular Ca2+-dependent nuclease YokF from Bacillus subtilis and several other surface-exposed proteins from diverse bacteria are encoded in the genomes in two paralogous forms that differ by a ~45 amino acid fragment, which comprises a novel conserved domain. Sequence analysis of this domain revealed a conserved DxDxDGxxCE motif, which is strikingly similar to the Ca2+-binding loop of the calmodulin-like EF-hand domains, suggesting an evolutionary relationship between them. Functions of many of the other proteins in which the novel domain, named Excalibur (extracellular calcium-binding region), is found, as well as a structural model of its conserved motif are consistent with the notion that the Excalibur domain binds calcium. This domain is but one more example of the diversity of structural contexts surrounding the EF-hand-like calcium-binding loop in bacteria. This loop is thus more widespread than hitherto recognised and the evolution of EF-hand-like domains is probably more complex than previously appreciated [].
Probab=32.95 E-value=22 Score=15.14 Aligned_cols=9 Identities=56% Similarity=1.062 Sum_probs=6.6
Q ss_pred hhcCCCCCc
Q 047967 30 VMDKDGDGR 38 (81)
Q Consensus 30 ~~D~~~~g~ 38 (81)
.+|.|+||.
T Consensus 26 ~LDrD~DGi 34 (37)
T PF05901_consen 26 KLDRDGDGI 34 (37)
T ss_pred cccCCCCCC
Confidence 468888874
No 208
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=32.54 E-value=1.2e+02 Score=19.92 Aligned_cols=48 Identities=15% Similarity=0.248 Sum_probs=33.8
Q ss_pred CChHHHHHHHHHhh------cCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 047967 18 NGKDGLMEDVFKVM------DKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRL 66 (81)
Q Consensus 18 ~~~~~~~~~~F~~~------D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 66 (81)
.....+++++|+++ |+|.+..--.++|..+=.+.. -+++.+.++....
T Consensus 27 ~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYE-VLsDpekRk~YD~ 80 (336)
T KOG0713|consen 27 NASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYE-VLSDPEKRKHYDT 80 (336)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHH-HhcCHHHHHHHHh
Confidence 34466788888887 788888888888888777643 4566666665544
No 209
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=31.61 E-value=44 Score=24.51 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=36.3
Q ss_pred HHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCC
Q 047967 25 EDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDEN 72 (81)
Q Consensus 25 ~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~ 72 (81)
.-+++.||...+|.|..-+|+-.+..+......+..+-+|+....++.
T Consensus 473 N~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~s 520 (966)
T KOG4286|consen 473 NWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTS 520 (966)
T ss_pred HHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchh
Confidence 446788999999999999999888877545555556688888764443
No 210
>smart00657 RPOL4c DNA-directed RNA-polymerase II subunit.
Probab=31.54 E-value=92 Score=16.84 Aligned_cols=23 Identities=4% Similarity=0.235 Sum_probs=9.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH
Q 047967 43 DLKSYMNCASFAATDDDIEAMIR 65 (81)
Q Consensus 43 el~~~l~~~g~~~~~~~~~~~~~ 65 (81)
+++.++..+..++++++++.++.
T Consensus 87 E~~~lI~sl~~r~~ee~l~~iL~ 109 (118)
T smart00657 87 EAQLLIPSLEERIDEEELEELLD 109 (118)
T ss_pred HHHHHhhhhhccCCHHHHHHHHH
Confidence 33333333333344444444433
No 211
>COG1438 ArgR Arginine repressor [Transcription]
Probab=31.52 E-value=90 Score=17.98 Aligned_cols=31 Identities=6% Similarity=0.089 Sum_probs=25.7
Q ss_pred CccCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 047967 37 GRLSHDDLKSYMNCASFAATDDDIEAMIRLG 67 (81)
Q Consensus 37 g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 67 (81)
..=+-+|+...|...|+..++..+.+.++++
T Consensus 19 ~i~TQ~Elv~~L~~~Gi~vTQaTvSRDlkel 49 (150)
T COG1438 19 KISTQEELVELLQEEGIEVTQATVSRDLKEL 49 (150)
T ss_pred CCCCHHHHHHHHHHcCCeEehHHHHHHHHHc
Confidence 3557789999999999889988888888775
No 212
>KOG2278 consensus RNA:NAD 2'-phosphotransferase TPT1 [Translation, ribosomal structure and biogenesis]
Probab=31.29 E-value=75 Score=19.00 Aligned_cols=38 Identities=24% Similarity=0.327 Sum_probs=29.5
Q ss_pred cCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCC
Q 047967 32 DKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGG 69 (81)
Q Consensus 32 D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~ 69 (81)
.-+.||++..++|-..-+.-|.+-+-++++.+.+.-|+
T Consensus 28 ~m~~dGfvpv~~lL~lnq~r~~~~t~ddi~riVk~ndK 65 (207)
T KOG2278|consen 28 NMRGDGFVPVEDLLNLNQFRGANHTIDDIRRIVKRNDK 65 (207)
T ss_pred cccCCCceEHHHHhccchhcccCCcHHHHHHHHhcccc
Confidence 45689999999998877766777777888888776543
No 213
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=31.03 E-value=69 Score=15.22 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=21.4
Q ss_pred ccCHHHHHHHHHHcCCCCCHHHHHHH
Q 047967 38 RLSHDDLKSYMNCASFAATDDDIEAM 63 (81)
Q Consensus 38 ~i~~~el~~~l~~~g~~~~~~~~~~~ 63 (81)
..+.+++..+.+..|+.++.+++...
T Consensus 24 ~~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 24 AEDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred cCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34678899999999999999888764
No 214
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=30.84 E-value=39 Score=20.15 Aligned_cols=37 Identities=11% Similarity=0.138 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCH
Q 047967 21 DGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATD 57 (81)
Q Consensus 21 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~ 57 (81)
.+.++++|..||...=-..+.+++.+.|..-+.--+.
T Consensus 53 re~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr 89 (187)
T PRK10353 53 RENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHR 89 (187)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhH
Confidence 4679999999998765667788888888866543333
No 215
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=30.02 E-value=76 Score=21.13 Aligned_cols=50 Identities=16% Similarity=0.254 Sum_probs=34.0
Q ss_pred HHHhhcCCCCCccCHHHHHHHHHHcCCCC-------CHH----HHHHHHHhhCCCCCCccc
Q 047967 27 VFKVMDKDGDGRLSHDDLKSYMNCASFAA-------TDD----DIEAMIRLGGGDENDGVS 76 (81)
Q Consensus 27 ~F~~~D~~~~g~i~~~el~~~l~~~g~~~-------~~~----~~~~~~~~~d~~~~~~i~ 76 (81)
+|..+|++....++..+-..++..+|++. +.+ ++..++..++..+...|-
T Consensus 162 vFDI~d~~t~~~L~~~er~~l~e~yglp~Vpvlg~~~~~~~~~~~~eii~~L~~~gREGVV 222 (374)
T TIGR01209 162 LFDIREGKTNRSLPVEERLELAEKYGLPHVEILGVYTADEAVEEIYEIIERLNKEGREGVV 222 (374)
T ss_pred EEEEEECCCCccCCHHHHHHHHHHCCCCccceeeEEcHHHHHHHHHHHHHHhhhcCcceEE
Confidence 35555556678999999999999988664 222 455677777766544343
No 216
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=29.91 E-value=1.1e+02 Score=17.29 Aligned_cols=36 Identities=8% Similarity=0.083 Sum_probs=24.5
Q ss_pred CCCccCHHHHHHHHHHc-CCCCCHHHHHHHHHhhCCC
Q 047967 35 GDGRLSHDDLKSYMNCA-SFAATDDDIEAMIRLGGGD 70 (81)
Q Consensus 35 ~~g~i~~~el~~~l~~~-g~~~~~~~~~~~~~~~d~~ 70 (81)
..+.|+.+-|+..|+.. ...++.+-++.+|..+-..
T Consensus 45 ~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 45 PEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKK 81 (138)
T ss_dssp ETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS---
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCc
Confidence 35689999999999974 6778888889999887543
No 217
>PF01498 HTH_Tnp_Tc3_2: Transposase; InterPro: IPR002492 Transposase proteins are necessary for efficient DNA transposition. This family includes the amino-terminal region of Tc1, Tc1A, Tc1B and Tc2B transposases of Caenorhabditis elegans. The region encompasses the specific DNA binding and second DNA recognition domains as well as an amino-terminal region of the catalytic domain of Tc3 as described in []. Tc3 is a member of the Tc1/mariner family of transposable elements. This entry also includes histone-lysine N-methyltransferase SETMAR, which is a SET domain and mariner transposase fusion gene-containing protein. This histone methyltransferase has sequence-specific DNA-binding activity and recognises the 19-mer core of the 5'-terminal inverted repeats (TIRs) of the Hsmar1 element. This protein has DNA nicking activity, and has in vivo end joining activity and may mediate genomic integration of foreign DNA [, , , ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated, 0015074 DNA integration; PDB: 3K9K_B 3F2K_B 3K9J_B 1U78_A.
Probab=29.67 E-value=74 Score=15.15 Aligned_cols=32 Identities=16% Similarity=0.284 Sum_probs=13.6
Q ss_pred CCccCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 047967 36 DGRLSHDDLKSYMNCASFAATDDDIEAMIRLG 67 (81)
Q Consensus 36 ~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 67 (81)
+..++..++...+...|..++..-+...+...
T Consensus 11 ~p~~s~~~i~~~l~~~~~~vS~~TI~r~L~~~ 42 (72)
T PF01498_consen 11 NPRISAREIAQELQEAGISVSKSTIRRRLREA 42 (72)
T ss_dssp -----HHHHHHHT---T--S-HHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHccCCcCHHHHHHHHHHc
Confidence 34566677766665556667766666666554
No 218
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=29.49 E-value=63 Score=14.33 Aligned_cols=25 Identities=4% Similarity=-0.059 Sum_probs=17.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 047967 42 DDLKSYMNCASFAATDDDIEAMIRLGG 68 (81)
Q Consensus 42 ~el~~~l~~~g~~~~~~~~~~~~~~~d 68 (81)
+|...+|..+| .+..++.+.+....
T Consensus 4 ~d~~~AL~~LG--y~~~e~~~av~~~~ 28 (47)
T PF07499_consen 4 EDALEALISLG--YSKAEAQKAVSKLL 28 (47)
T ss_dssp HHHHHHHHHTT--S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHhh
Confidence 46677788877 55567777777764
No 219
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=29.49 E-value=55 Score=22.79 Aligned_cols=55 Identities=7% Similarity=-0.076 Sum_probs=35.1
Q ss_pred HHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccccCCC
Q 047967 26 DVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSSPSFS 81 (81)
Q Consensus 26 ~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 81 (81)
.-|..+|+|..|.|....+-.++..-+. .+.++...+....-.+.+|.+.|..++
T Consensus 28 ~~~~dL~~Dl~dgv~l~qlLe~~~kd~~-g~yn~~p~tr~h~~envs~~le~ik~k 82 (612)
T COG5069 28 KEFGDLDTDLKDGVKLAQLLEALQKDNA-GEYNETPETRIHVMENVSGRLEFIKGK 82 (612)
T ss_pred HHHhhhccccccHHHHHHHHHHhhhccc-cccCCCHHHHHHHhhccccceeeeccC
Confidence 3566778888888887777777775421 122234455555556777888877653
No 220
>PF13551 HTH_29: Winged helix-turn helix
Probab=29.48 E-value=88 Score=15.95 Aligned_cols=49 Identities=8% Similarity=0.277 Sum_probs=32.6
Q ss_pred ChHHHHHHHHHhhcCCCCCccCHHHHHHHH-H-HcCCCCCHHHHHHHHHhh
Q 047967 19 GKDGLMEDVFKVMDKDGDGRLSHDDLKSYM-N-CASFAATDDDIEAMIRLG 67 (81)
Q Consensus 19 ~~~~~~~~~F~~~D~~~~g~i~~~el~~~l-~-~~g~~~~~~~~~~~~~~~ 67 (81)
...+.+..++.....++.+..+...+...+ . ..|..++..-+..++...
T Consensus 61 ~~~~~l~~~~~~~p~~g~~~~t~~~l~~~l~~~~~~~~~s~~ti~r~L~~~ 111 (112)
T PF13551_consen 61 EQRAQLIELLRENPPEGRSRWTLEELAEWLIEEEFGIDVSPSTIRRILKRA 111 (112)
T ss_pred HHHHHHHHHHHHCCCCCCCcccHHHHHHHHHHhccCccCCHHHHHHHHHHC
Confidence 344556666655443322468899999865 3 457888888888888754
No 221
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=29.28 E-value=1.2e+02 Score=22.26 Aligned_cols=32 Identities=31% Similarity=0.300 Sum_probs=14.3
Q ss_pred CCccCHHHHHHHHHHcC--CCCCHHHHHHHHHhh
Q 047967 36 DGRLSHDDLKSYMNCAS--FAATDDDIEAMIRLG 67 (81)
Q Consensus 36 ~g~i~~~el~~~l~~~g--~~~~~~~~~~~~~~~ 67 (81)
.++++..+|...+...+ -..+.+.+++++..+
T Consensus 218 ~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~ 251 (746)
T KOG0169|consen 218 KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERY 251 (746)
T ss_pred CCccCHHHHHHHHHHhcccccccHHHHHHHHHHh
Confidence 44555555555444331 223444444444444
No 222
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=29.21 E-value=72 Score=21.90 Aligned_cols=30 Identities=17% Similarity=0.433 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHH
Q 047967 21 DGLMEDVFKVMDKDGDGRLSHDDLKSYMNC 50 (81)
Q Consensus 21 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~ 50 (81)
.+.++.+-+.+|-|++|.|+.+|-...|+.
T Consensus 67 ~EAir~iHrqmDDD~nG~Id~~ESdeFlrE 96 (575)
T KOG4403|consen 67 YEAIRDIHRQMDDDHNGSIDVEESDEFLRE 96 (575)
T ss_pred HHHHHHHHHhcccccCCCcccccchHHHHH
Confidence 478899999999999999999988888874
No 223
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=29.05 E-value=79 Score=17.37 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=15.5
Q ss_pred CccCHHHHHHHHHHcCCCC
Q 047967 37 GRLSHDDLKSYMNCASFAA 55 (81)
Q Consensus 37 g~i~~~el~~~l~~~g~~~ 55 (81)
|.++...++++|+.+|...
T Consensus 3 ~~~nprk~rkmmkkmGik~ 21 (115)
T PRK06369 3 GGMNPRKMKQMMKQMGIDV 21 (115)
T ss_pred CCCCHHHHHHHHHHcCCcc
Confidence 5678889999999988664
No 224
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=28.89 E-value=83 Score=15.47 Aligned_cols=42 Identities=5% Similarity=0.056 Sum_probs=28.7
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 047967 24 MEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLG 67 (81)
Q Consensus 24 ~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 67 (81)
+..+|--+=.+..+.|...+|..++..+| +++..++..+..+
T Consensus 6 i~tl~Gdy~~~~g~~i~~~~Li~ll~~~G--v~e~avR~alsRl 47 (70)
T PF07848_consen 6 IVTLLGDYLRPRGGWIWVASLIRLLAAFG--VSESAVRTALSRL 47 (70)
T ss_dssp HHHHHHHHCCTTTS-EEHHHHHHHHCCTT----HHHHHHHHHHH
T ss_pred hHHHHHHHhccCCCceeHHHHHHHHHHcC--CChHHHHHHHHHH
Confidence 44555555567789999999999999888 6666666666554
No 225
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=28.22 E-value=1e+02 Score=16.32 Aligned_cols=32 Identities=6% Similarity=0.022 Sum_probs=24.4
Q ss_pred CCccCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 047967 36 DGRLSHDDLKSYMNCASFAATDDDIEAMIRLG 67 (81)
Q Consensus 36 ~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 67 (81)
++.+|.+++...|+..+..++..-+.+.+..+
T Consensus 21 ~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L 52 (120)
T PF01475_consen 21 PEHLTAEEIYDKLRKKGPRISLATVYRTLDLL 52 (120)
T ss_dssp SSSEEHHHHHHHHHHTTTT--HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhhhccCCcCHHHHHHHHHHH
Confidence 34899999999999988888877777766665
No 226
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=28.18 E-value=69 Score=14.33 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=19.2
Q ss_pred CCccC-HHHHHHHHHHcCCCCCHHHHHHHHHh
Q 047967 36 DGRLS-HDDLKSYMNCASFAATDDDIEAMIRL 66 (81)
Q Consensus 36 ~g~i~-~~el~~~l~~~g~~~~~~~~~~~~~~ 66 (81)
.|.|+ ...+-..|...|+.+++..++.+++.
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 45665 33444445556788888777777654
No 227
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=27.87 E-value=58 Score=13.37 Aligned_cols=15 Identities=13% Similarity=0.315 Sum_probs=10.9
Q ss_pred CCccCHHHHHHHHHH
Q 047967 36 DGRLSHDDLKSYMNC 50 (81)
Q Consensus 36 ~g~i~~~el~~~l~~ 50 (81)
.|.|+.+++..+...
T Consensus 2 ~~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 2 SGTISKEEYLDMASR 16 (33)
T ss_pred CceecHHHHHHHHHH
Confidence 577888888776664
No 228
>PF14178 YppF: YppF-like protein
Probab=27.85 E-value=71 Score=15.44 Aligned_cols=16 Identities=13% Similarity=0.353 Sum_probs=10.2
Q ss_pred CCccCHHHHHHHHHHc
Q 047967 36 DGRLSHDDLKSYMNCA 51 (81)
Q Consensus 36 ~g~i~~~el~~~l~~~ 51 (81)
.|.|+..+.+..++.+
T Consensus 34 ~gei~i~eYR~lvreL 49 (60)
T PF14178_consen 34 QGEISINEYRNLVREL 49 (60)
T ss_pred hCcccHHHHHHHHHHH
Confidence 3667777777666643
No 229
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=27.85 E-value=1.3e+02 Score=17.35 Aligned_cols=44 Identities=14% Similarity=0.075 Sum_probs=30.2
Q ss_pred hHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 047967 20 KDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLG 67 (81)
Q Consensus 20 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 67 (81)
+...+..++.. .++.+|.+++...|...+.+++..-+.+.+..+
T Consensus 27 qR~~IL~~l~~----~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L 70 (169)
T PRK11639 27 QRLEVLRLMSL----QPGAISAYDLLDLLREAEPQAKPPTVYRALDFL 70 (169)
T ss_pred HHHHHHHHHHh----cCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHH
Confidence 33444444442 357899999999999888777766666666554
No 230
>PF04081 DNA_pol_delta_4: DNA polymerase delta, subunit 4 ; InterPro: IPR007218 DNA polymerase is responsible for effective DNA replication. The function of the delta subunit 4 of DNA polymerase is not yet known.; GO: 0006260 DNA replication, 0005634 nucleus
Probab=27.64 E-value=1.2e+02 Score=16.93 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=38.0
Q ss_pred hHHHHHHHHHhhcCCCC-C-ccCHHHHHHHHHH--cCCCCCHHHHHHHHHhhCCCCCCc
Q 047967 20 KDGLMEDVFKVMDKDGD-G-RLSHDDLKSYMNC--ASFAATDDDIEAMIRLGGGDENDG 74 (81)
Q Consensus 20 ~~~~~~~~F~~~D~~~~-g-~i~~~el~~~l~~--~g~~~~~~~~~~~~~~~d~~~~~~ 74 (81)
.......+++.||.+.. | +|...-+.++-++ +|.++.. ++..++.....+.+..
T Consensus 60 ~~~~~e~~Lr~FDl~~~yGPC~GitRl~RW~RA~~lgL~PP~-ev~~vL~~~~~~~~~~ 117 (124)
T PF04081_consen 60 DLSQHEKILRQFDLSSQYGPCIGITRLERWERAKRLGLNPPI-EVLAVLLLKEGDEENK 117 (124)
T ss_pred hhhHHHHHHHHhccccccCCccCchHHHHHHHHHHcCCCCCH-HHHHHHHhccCCcccc
Confidence 45678889999998865 3 7888888888885 6766655 4777775554444443
No 231
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.48 E-value=1.5e+02 Score=18.75 Aligned_cols=38 Identities=18% Similarity=0.365 Sum_probs=27.4
Q ss_pred HHHHHHHHHhh-cCCCCCccCHHHHHHHHHHcCCCCCHH
Q 047967 21 DGLMEDVFKVM-DKDGDGRLSHDDLKSYMNCASFAATDD 58 (81)
Q Consensus 21 ~~~~~~~F~~~-D~~~~g~i~~~el~~~l~~~g~~~~~~ 58 (81)
...+..+|..+ |++.+..|..+-+...+..+|..+.+-
T Consensus 63 ~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i 101 (260)
T KOG3077|consen 63 EKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDI 101 (260)
T ss_pred HHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhH
Confidence 44566666655 555556889999999999999777543
No 232
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=27.43 E-value=55 Score=20.47 Aligned_cols=44 Identities=18% Similarity=0.406 Sum_probs=24.1
Q ss_pred HHHHHHHhhcC--CCCCccCHHHHHHHHHHc--CCCCCHHH---HHHHHHhh
Q 047967 23 LMEDVFKVMDK--DGDGRLSHDDLKSYMNCA--SFAATDDD---IEAMIRLG 67 (81)
Q Consensus 23 ~~~~~F~~~D~--~~~g~i~~~el~~~l~~~--g~~~~~~~---~~~~~~~~ 67 (81)
.+..+|..+-. .-||.|+..|+. ..+.+ ...++.+. +..++...
T Consensus 54 ff~a~~aLl~~vAkADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~ 104 (267)
T PRK09430 54 FFNTTFAVMGHLAKAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREG 104 (267)
T ss_pred HHHHHHHHHHHHHhcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 34445554432 358999999998 33432 14456555 44444443
No 233
>COG3077 RelB DNA-damage-inducible protein J [DNA replication, recombination, and repair]
Probab=27.24 E-value=98 Score=16.17 Aligned_cols=12 Identities=0% Similarity=0.033 Sum_probs=4.9
Q ss_pred HHHHHHHcCCCC
Q 047967 44 LKSYMNCASFAA 55 (81)
Q Consensus 44 l~~~l~~~g~~~ 55 (81)
-..+|..+|..+
T Consensus 19 A~~Vl~~mGlt~ 30 (88)
T COG3077 19 ATAVLEEMGLTI 30 (88)
T ss_pred HHHHHHHhCCCH
Confidence 333444444333
No 234
>PRK05066 arginine repressor; Provisional
Probab=27.21 E-value=1.3e+02 Score=17.28 Aligned_cols=31 Identities=13% Similarity=0.184 Sum_probs=25.8
Q ss_pred ccCHHHHHHHHHHcCCC-CCHHHHHHHHHhhC
Q 047967 38 RLSHDDLKSYMNCASFA-ATDDDIEAMIRLGG 68 (81)
Q Consensus 38 ~i~~~el~~~l~~~g~~-~~~~~~~~~~~~~d 68 (81)
.=+-+||...|...|+. .|+..+.+-++++.
T Consensus 23 I~tQeeL~~~L~~~Gi~~vTQATiSRDikeL~ 54 (156)
T PRK05066 23 FGSQGEIVTALQEQGFDNINQSKVSRMLTKFG 54 (156)
T ss_pred CCCHHHHHHHHHHCCCCeecHHHHHHHHHHcC
Confidence 44778999999999999 89988887777653
No 235
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=26.59 E-value=1.2e+02 Score=16.54 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=27.3
Q ss_pred ccCHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 047967 38 RLSHDDLKSYMNCASFAATDDDIEAMIRLGG 68 (81)
Q Consensus 38 ~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d 68 (81)
.|+-+.|..++...|..+....+.-++..+.
T Consensus 16 ei~e~~l~~vl~aaGveve~~r~k~lvaaLe 46 (109)
T COG2058 16 EITEDNLKSVLEAAGVEVEEARAKALVAALE 46 (109)
T ss_pred cCCHHHHHHHHHHcCCCccHHHHHHHHHHhc
Confidence 8999999999999999998888887777764
No 236
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=26.49 E-value=75 Score=14.22 Aligned_cols=41 Identities=10% Similarity=0.159 Sum_probs=29.4
Q ss_pred ChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 047967 19 GKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRL 66 (81)
Q Consensus 19 ~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 66 (81)
.+...|...|.. +.+.+..+...+-..+| ++...|..+|..
T Consensus 10 ~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~--l~~~~V~~WF~n 50 (57)
T PF00046_consen 10 EQLKVLEEYFQE-----NPYPSKEEREELAKELG--LTERQVKNWFQN 50 (57)
T ss_dssp HHHHHHHHHHHH-----SSSCHHHHHHHHHHHHT--SSHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----hcccccccccccccccc--ccccccccCHHH
Confidence 345667777763 56888888888888877 666777777753
No 237
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=25.65 E-value=52 Score=20.20 Aligned_cols=40 Identities=13% Similarity=0.271 Sum_probs=25.8
Q ss_pred CHHHHHHHHH----HcCCCCCHHHHHHHHHhhCCCCCCcccccC
Q 047967 40 SHDDLKSYMN----CASFAATDDDIEAMIRLGGGDENDGVSSPS 79 (81)
Q Consensus 40 ~~~el~~~l~----~~g~~~~~~~~~~~~~~~d~~~~~~i~~~e 79 (81)
+.++++.++. .++..+++..++.+...+..=.+-.++|.+
T Consensus 173 t~~eI~~IV~~~~~~~~i~ls~~q~~~i~~l~~~~~~~~~~~~~ 216 (225)
T PF06207_consen 173 TDEEIRNIVNNVLNNYNINLSDEQIQQIVNLMKKIQNLNIDWKQ 216 (225)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcCCCCHHH
Confidence 6777776554 467888888888877776543444455443
No 238
>PF02334 RTP: Replication terminator protein; InterPro: IPR003432 The bacterial replication terminator protein (RTP) plays a role in the termination of DNA replication by impeding replication fork movement. Two RTP dimers bind to the two inverted repeat regions at the termination site.; GO: 0003677 DNA binding, 0006274 DNA replication termination; PDB: 2DPU_A 2DPD_A 1F4K_A 1J0R_B 2EFW_F 2DQR_B 1BM9_B.
Probab=25.60 E-value=63 Score=17.77 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=24.6
Q ss_pred CCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCC
Q 047967 36 DGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGD 70 (81)
Q Consensus 36 ~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~ 70 (81)
=|..-.++|+.-++.+|..++..++-+.+-.+..+
T Consensus 33 Yg~q~Ld~lr~EFk~~Gy~P~hsEvYraLHeL~~d 67 (122)
T PF02334_consen 33 YGLQLLDELRSEFKPLGYRPNHSEVYRALHELVDD 67 (122)
T ss_dssp BCTCHHHHHHHHHTTTT----HHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhh
Confidence 36777889999999999999999888877776433
No 239
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=25.34 E-value=87 Score=15.07 Aligned_cols=15 Identities=13% Similarity=0.536 Sum_probs=11.4
Q ss_pred CCCCccCHHHHHHHH
Q 047967 34 DGDGRLSHDDLKSYM 48 (81)
Q Consensus 34 ~~~g~i~~~el~~~l 48 (81)
+++|.|...++...|
T Consensus 18 ~~~g~i~lkdIA~~L 32 (60)
T PF10668_consen 18 ESNGKIKLKDIAEKL 32 (60)
T ss_pred HhCCCccHHHHHHHH
Confidence 578899888887544
No 240
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=25.17 E-value=34 Score=15.77 Aligned_cols=36 Identities=14% Similarity=0.326 Sum_probs=19.2
Q ss_pred HHhhcCCCCCccCHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 047967 28 FKVMDKDGDGRLSHDDLKSYMNCASFAAT-DDDIEAMIR 65 (81)
Q Consensus 28 F~~~D~~~~g~i~~~el~~~l~~~g~~~~-~~~~~~~~~ 65 (81)
|..+...+++.+|..|+...+.. .+.. ...++++++
T Consensus 12 ~dii~~~g~~~ls~~eia~~l~~--~~p~~~~~L~RimR 48 (51)
T PF08100_consen 12 PDIIHNAGGGPLSLSEIAARLPT--SNPSAPPMLDRIMR 48 (51)
T ss_dssp HHHHHHHTTS-BEHHHHHHTSTC--T-TTHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHcCC--CCcchHHHHHHHHH
Confidence 44444434578999988876653 2333 334555554
No 241
>PRK11235 bifunctional antitoxin/transcriptional repressor RelB; Provisional
Probab=24.82 E-value=1e+02 Score=15.68 Aligned_cols=11 Identities=9% Similarity=0.009 Sum_probs=5.1
Q ss_pred HHHHHHHhhcC
Q 047967 23 LMEDVFKVMDK 33 (81)
Q Consensus 23 ~~~~~F~~~D~ 33 (81)
....+|..+..
T Consensus 15 ~A~~vl~~lGl 25 (80)
T PRK11235 15 RAYAVLEKLGV 25 (80)
T ss_pred HHHHHHHHhCC
Confidence 34445554443
No 242
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.71 E-value=1.2e+02 Score=18.61 Aligned_cols=32 Identities=16% Similarity=0.314 Sum_probs=20.9
Q ss_pred CCCCccCHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047967 34 DGDGRLSHDDLKSYMNCASFAATDDDIEAMIR 65 (81)
Q Consensus 34 ~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~ 65 (81)
..||.|+-.|-..++..+...=.+.+.+.++.
T Consensus 122 kaDGhIDe~ERa~I~~~l~esG~d~e~~~~le 153 (225)
T COG2979 122 KADGHIDEKERARIMQKLQESGVDPEAQAFLE 153 (225)
T ss_pred hhcCCcCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 46899999999999965543333344444443
No 243
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=24.54 E-value=95 Score=17.33 Aligned_cols=44 Identities=9% Similarity=0.227 Sum_probs=30.9
Q ss_pred CCCccCHHHHHHHHHHcC---------CCCCHHHHHHHHHhhCCCCCC-ccccc
Q 047967 35 GDGRLSHDDLKSYMNCAS---------FAATDDDIEAMIRLGGGDEND-GVSSP 78 (81)
Q Consensus 35 ~~g~i~~~el~~~l~~~g---------~~~~~~~~~~~~~~~d~~~~~-~i~~~ 78 (81)
++..||.+||.+.+..-. +.++.++++++...+.....+ .++..
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~ 133 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLA 133 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHH
Confidence 567899999999888631 224788888888888765544 35543
No 244
>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=24.51 E-value=1.2e+02 Score=17.54 Aligned_cols=25 Identities=8% Similarity=0.255 Sum_probs=20.7
Q ss_pred hcCCCCCccCHHHHHHHHHHcCCCC
Q 047967 31 MDKDGDGRLSHDDLKSYMNCASFAA 55 (81)
Q Consensus 31 ~D~~~~g~i~~~el~~~l~~~g~~~ 55 (81)
++++..-.|.++....+|..+|+.-
T Consensus 59 c~~e~KKTIa~EHV~KALe~LgF~e 83 (156)
T KOG0871|consen 59 CNKEAKKTIAPEHVIKALENLGFGE 83 (156)
T ss_pred HhHHhcccCCHHHHHHHHHHcchHH
Confidence 3566677999999999999999773
No 245
>PF11907 DUF3427: Domain of unknown function (DUF3427); InterPro: IPR021835 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is typically between 243 to 275 amino acids in length. This domain is found associated with PF04851 from PFAM, PF00271 from PFAM.
Probab=24.51 E-value=1.9e+02 Score=18.14 Aligned_cols=34 Identities=9% Similarity=0.313 Sum_probs=26.3
Q ss_pred CCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 047967 35 GDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGG 68 (81)
Q Consensus 35 ~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d 68 (81)
+++.++..++...|...+...+.+.++.++.++.
T Consensus 24 ~~~~is~~~~~~~l~~~~~~~~~~~~~s~~~~L~ 57 (274)
T PF11907_consen 24 KNSSISIEDFREILKENHIDIDEETLKSALRMLS 57 (274)
T ss_pred hcCCcCHHHHHHHHHHcCccccHHHHHHHHHHHH
Confidence 4678999999999998877777776666666543
No 246
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=24.12 E-value=2e+02 Score=18.18 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=32.9
Q ss_pred CCCCChHHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 047967 15 SKSNGKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGG 68 (81)
Q Consensus 15 ~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d 68 (81)
..+.++.+.+++++..++.+ +|.++..++..- +| ++..-+++.++.+.
T Consensus 176 tLSySEleAv~~IL~~L~~~-egrlse~eLAer---lG--VSRs~ireAlrkLE 223 (251)
T TIGR02787 176 TLSYSELEAVEHIFEELDGN-EGLLVASKIADR---VG--ITRSVIVNALRKLE 223 (251)
T ss_pred hccHhHHHHHHHHHHHhccc-cccccHHHHHHH---HC--CCHHHHHHHHHHHH
Confidence 44566788999999999853 689998888753 34 44445666666553
No 247
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=24.11 E-value=29 Score=20.50 Aligned_cols=42 Identities=14% Similarity=0.300 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHH
Q 047967 21 DGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEA 62 (81)
Q Consensus 21 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~ 62 (81)
.+.++.+|.-||.+.=-..+.+++.+++..-+.--+...++.
T Consensus 48 r~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~~iIRnr~KI~A 89 (179)
T PF03352_consen 48 REAFREAFAGFDPEKVAKMDEEDIERLMQDPGIIRNRRKIRA 89 (179)
T ss_dssp HHHHHHHTGGGHHHHHHT--HHHHHHHTTSTTSS--HHHHHH
T ss_pred HHHHHHHHHCCCHHHHHcCCHHHHHHHhcCcchhhhHHHHHH
Confidence 467899999999776566777788888776665444444443
No 248
>PF07592 DDE_Tnp_ISAZ013: Rhodopirellula transposase DDE domain; InterPro: IPR011518 These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=23.99 E-value=2.1e+02 Score=18.63 Aligned_cols=18 Identities=11% Similarity=0.220 Sum_probs=13.0
Q ss_pred ccCHHHHHHHHHHcCCCC
Q 047967 38 RLSHDDLKSYMNCASFAA 55 (81)
Q Consensus 38 ~i~~~el~~~l~~~g~~~ 55 (81)
.++..-+..+|..+|+.+
T Consensus 40 ~vS~~tV~~lL~~lGYsL 57 (311)
T PF07592_consen 40 PVSARTVARLLNRLGYSL 57 (311)
T ss_pred CccHHHHHHHHHHcCcch
Confidence 377777788887777664
No 249
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=23.91 E-value=1.3e+02 Score=16.00 Aligned_cols=25 Identities=24% Similarity=0.322 Sum_probs=18.9
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHhh
Q 047967 43 DLKSYMNCASFAATDDDIEAMIRLG 67 (81)
Q Consensus 43 el~~~l~~~g~~~~~~~~~~~~~~~ 67 (81)
-+...|...|.++|+.+++.++...
T Consensus 76 ~v~~~L~~~gi~~t~~~i~~~IEaA 100 (108)
T PF09682_consen 76 YVKERLKKKGIKVTDEQIEGAIEAA 100 (108)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4456677789999999888877653
No 250
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=23.76 E-value=1.2e+02 Score=15.75 Aligned_cols=32 Identities=13% Similarity=0.180 Sum_probs=25.6
Q ss_pred CCccCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 047967 36 DGRLSHDDLKSYMNCASFAATDDDIEAMIRLG 67 (81)
Q Consensus 36 ~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 67 (81)
++.+|..++...++.-+.+++...+.+.+..+
T Consensus 14 ~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L 45 (116)
T cd07153 14 DGHLTAEEIYERLRKKGPSISLATVYRTLELL 45 (116)
T ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 57899999999998877778777777766665
No 251
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=23.65 E-value=1.5e+02 Score=21.50 Aligned_cols=46 Identities=13% Similarity=0.035 Sum_probs=34.6
Q ss_pred cCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccc
Q 047967 32 DKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGGGDENDGVSS 77 (81)
Q Consensus 32 D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~~~i~~ 77 (81)
.++.+-++...||..++..+|.-++.+|-...+..++...+....|
T Consensus 789 g~~a~vyL~Saelaav~aiLGkiPt~eEY~~~v~~i~~~~~~~yry 834 (852)
T COG1049 789 GKGANVYLASAELAAVCAILGKIPTVEEYMAYVAKIDKQADDIYRY 834 (852)
T ss_pred ccccceeeeccHHHHHHHHHcCCCCHHHHHHHHHHhcccchhhhhh
Confidence 3445567888999999999998888888888888776655443333
No 252
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=23.35 E-value=1.2e+02 Score=15.81 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=7.0
Q ss_pred CccCHHHHHHHHHHc
Q 047967 37 GRLSHDDLKSYMNCA 51 (81)
Q Consensus 37 g~i~~~el~~~l~~~ 51 (81)
=.|..+++..++..+
T Consensus 23 i~v~~~~L~~f~~~i 37 (90)
T PF02337_consen 23 IRVKKKDLINFLSFI 37 (90)
T ss_dssp ----HHHHHHHHHHH
T ss_pred eeecHHHHHHHHHHH
Confidence 356667776666643
No 253
>COG5250 RPB4 RNA polymerase II, fourth largest subunit [Transcription]
Probab=23.11 E-value=1.5e+02 Score=16.55 Aligned_cols=26 Identities=12% Similarity=0.225 Sum_probs=12.5
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHh
Q 047967 41 HDDLKSYMNCASFAATDDDIEAMIRL 66 (81)
Q Consensus 41 ~~el~~~l~~~g~~~~~~~~~~~~~~ 66 (81)
.+|-+..+.++|.++++...+.+++.
T Consensus 105 aeEAktLiPSL~nkidD~~lq~ilke 130 (138)
T COG5250 105 AEEAKTLIPSLGNKIDDAILQAILKE 130 (138)
T ss_pred HHHHHhhcccccccccHHHHHHHHHH
Confidence 33444444455555555555444443
No 254
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=23.05 E-value=1e+02 Score=17.20 Aligned_cols=15 Identities=7% Similarity=0.248 Sum_probs=6.5
Q ss_pred ccCHHHHHHHHHHcC
Q 047967 38 RLSHDDLKSYMNCAS 52 (81)
Q Consensus 38 ~i~~~el~~~l~~~g 52 (81)
+|...+|+.++..+|
T Consensus 18 ki~MaeLr~~l~~~G 32 (137)
T PF08002_consen 18 KIKMAELREALEDLG 32 (137)
T ss_dssp ---HHHHHHHHHHCT
T ss_pred cccHHHHHHHHHHcC
Confidence 455555555555544
No 255
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=22.99 E-value=92 Score=16.43 Aligned_cols=30 Identities=7% Similarity=0.138 Sum_probs=21.5
Q ss_pred CChHHHHHHHHHhhcCCCCCccCHHHHHHHHHH
Q 047967 18 NGKDGLMEDVFKVMDKDGDGRLSHDDLKSYMNC 50 (81)
Q Consensus 18 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~ 50 (81)
++..+.++.+...+= +|.|+.+||+.-|..
T Consensus 22 pe~~~~Vr~LV~~L~---~~~i~~EeF~~~Lq~ 51 (92)
T smart00549 22 PEVAERVRTLVLGLV---NGTITAEEFTSRLQE 51 (92)
T ss_pred chHHHHHHHHHHHHH---hCCCCHHHHHHHHHH
Confidence 445566676655433 689999999998875
No 256
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=22.88 E-value=50 Score=17.19 Aligned_cols=23 Identities=4% Similarity=0.154 Sum_probs=15.4
Q ss_pred CCCccCHHHHHHHHHHcCCCCCH
Q 047967 35 GDGRLSHDDLKSYMNCASFAATD 57 (81)
Q Consensus 35 ~~g~i~~~el~~~l~~~g~~~~~ 57 (81)
++..-+..++.+-|..+|++.+.
T Consensus 38 Nns~~s~~~~~~~L~~~Gi~~~~ 60 (101)
T PF13344_consen 38 NNSSRSREEYAKKLKKLGIPVDE 60 (101)
T ss_dssp S-SSS-HHHHHHHHHHTTTT--G
T ss_pred CCCCCCHHHHHHHHHhcCcCCCc
Confidence 45667888999989999888753
No 257
>PF09687 PRESAN: Plasmodium RESA N-terminal; InterPro: IPR019111 The short, four-helical domain first identified in the Plasmodium export proteins PHISTa and PHISTc [] has been extended to become this six-helical PRESAC domain identified in the P. falciparum-specific RESA-type (Ring-infected erythrocyte surface antigen) proteins in association with the DnaJ domain. Overall, at least 67 proteins have been detected in P. falciparum with complete copies of the PRESAC domain. No versions of this domain were detected in other apicomplexan genera, suggesting that the domain was 'invented' after the divergence of the lineage leading to the genus Plasmodium undergoing a dramatic proliferation only in P. falciparum. A secondary structure-prediction derived from the multiple alignment of the PRESAC family reveals that it is composed of an all-helical fold with six conserved helical segments. There is some evidence it might localise to membranes [].
Probab=22.74 E-value=1.3e+02 Score=15.73 Aligned_cols=30 Identities=10% Similarity=0.174 Sum_probs=19.0
Q ss_pred ccCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 047967 38 RLSHDDLKSYMNCASFAATDDDIEAMIRLG 67 (81)
Q Consensus 38 ~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 67 (81)
.++.+++...+..++..++..++..++..+
T Consensus 5 ~lt~~ei~~~i~~l~~~~~k~~m~~iw~~~ 34 (129)
T PF09687_consen 5 NLTDEEINKKINSLGEFVSKKDMYNIWNQV 34 (129)
T ss_pred HhhHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 345667777777776666666666655543
No 258
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=22.74 E-value=1.1e+02 Score=14.62 Aligned_cols=29 Identities=17% Similarity=0.414 Sum_probs=12.7
Q ss_pred HHHHHHHHHhh--cCCCCCccCHHHHHHHHHH
Q 047967 21 DGLMEDVFKVM--DKDGDGRLSHDDLKSYMNC 50 (81)
Q Consensus 21 ~~~~~~~F~~~--D~~~~g~i~~~el~~~l~~ 50 (81)
.+++..+.+.| +. ....++.++|+.+|..
T Consensus 14 l~RIh~mLkmf~~~~-~~~~~s~~eL~~fL~~ 44 (60)
T PF08672_consen 14 LDRIHSMLKMFPKDP-GGYDISLEELQEFLDR 44 (60)
T ss_dssp HHHHHHHHHHH-GGG---TT--HHHHHHHHHH
T ss_pred HHHHHHHHHhccCCC-CCCCCCHHHHHHHHHH
Confidence 44555555555 32 2334555566555543
No 259
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=22.57 E-value=1.5e+02 Score=16.17 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=20.2
Q ss_pred CCCccCHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 047967 35 GDGRLSHDDLKSYMNCASFAATDDDIEAMIRL 66 (81)
Q Consensus 35 ~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 66 (81)
..|.++.+++..-+..-+..++..++..++..
T Consensus 25 ~~~~~tl~~Ia~~i~~~~s~~t~~di~~vl~~ 56 (124)
T PF14848_consen 25 SSGTLTLEDIAEEIAKEGSTLTRADIEAVLNA 56 (124)
T ss_pred ecCccCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 35677777777666555666766666555444
No 260
>PF13182 DUF4007: Protein of unknown function (DUF4007)
Probab=22.49 E-value=1.8e+02 Score=18.44 Aligned_cols=44 Identities=14% Similarity=0.122 Sum_probs=30.9
Q ss_pred CCCCccCHHHHHHHHHHcC--CCCCHHHHHHHHHhhCCCCCCccccc
Q 047967 34 DGDGRLSHDDLKSYMNCAS--FAATDDDIEAMIRLGGGDENDGVSSP 78 (81)
Q Consensus 34 ~~~g~i~~~el~~~l~~~g--~~~~~~~~~~~~~~~d~~~~~~i~~~ 78 (81)
.+...|+.++|...-...| ++++...+.+.+..+.... |.|.+.
T Consensus 216 ~~~~sis~~~L~~~~~sPGriF~L~~~~l~~~L~~l~~~~-g~i~~~ 261 (286)
T PF13182_consen 216 PGRNSISFDELLNEPGSPGRIFKLDEESLAERLEQLEEIY-GFISWS 261 (286)
T ss_pred CCCcEEEHHHHhcCCCCcceEeccCHHHHHHHHHHHHhhc-CcEEEE
Confidence 4567899988865444444 6688888888888887654 666654
No 261
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=22.33 E-value=1.4e+02 Score=17.81 Aligned_cols=26 Identities=8% Similarity=0.243 Sum_probs=18.3
Q ss_pred CCCCccCHHHHHHHHHHcCC-CCCHHH
Q 047967 34 DGDGRLSHDDLKSYMNCASF-AATDDD 59 (81)
Q Consensus 34 ~~~g~i~~~el~~~l~~~g~-~~~~~~ 59 (81)
.-||.|+..|-..+...++. ..+.++
T Consensus 91 kADG~ID~~Er~~I~~~l~~~g~d~e~ 117 (188)
T PF04391_consen 91 KADGHIDEEERQRIEGALQELGLDAEE 117 (188)
T ss_pred HcCCCCCHHHHHHHHHHHHHhCCCHHH
Confidence 35899999999999776642 344443
No 262
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=22.27 E-value=1.9e+02 Score=18.43 Aligned_cols=32 Identities=9% Similarity=0.068 Sum_probs=19.4
Q ss_pred CCccCHHHHHHHHHHc----------------CCCCCHHHHHHHHHhh
Q 047967 36 DGRLSHDDLKSYMNCA----------------SFAATDDDIEAMIRLG 67 (81)
Q Consensus 36 ~g~i~~~el~~~l~~~----------------g~~~~~~~~~~~~~~~ 67 (81)
+|.|+.+.+++.+..+ +..++.+|-.++++..
T Consensus 23 ~g~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~ 70 (309)
T cd00952 23 TDTVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATV 70 (309)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHH
Confidence 5777777777766643 1235666666666543
No 263
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=22.11 E-value=1.5e+02 Score=15.96 Aligned_cols=31 Identities=13% Similarity=0.340 Sum_probs=26.8
Q ss_pred ccCHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 047967 38 RLSHDDLKSYMNCASFAATDDDIEAMIRLGG 68 (81)
Q Consensus 38 ~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d 68 (81)
.++.+++..+|...|.......+..+...+.
T Consensus 16 ~iT~e~I~~IL~AAGv~ve~~~~~~la~~L~ 46 (105)
T TIGR03685 16 EINEENLKAVLEAAGVEVDEARVKALVAALE 46 (105)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHc
Confidence 8999999999999999888887877777764
No 264
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=22.06 E-value=1.1e+02 Score=14.55 Aligned_cols=41 Identities=12% Similarity=0.120 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 047967 21 DGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGG 68 (81)
Q Consensus 21 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d 68 (81)
+..+...|..+ +.+.-.+|...+.+.+ ++.++++.+|..-.
T Consensus 10 ~~pL~~Yy~~h-----~~L~E~DL~~L~~kS~--ms~qqVr~WFa~~~ 50 (56)
T PF11569_consen 10 IQPLEDYYLKH-----KQLQEEDLDELCDKSR--MSYQQVRDWFAERM 50 (56)
T ss_dssp -HHHHHHHHHT---------TTHHHHHHHHTT----HHHHHHHHHHHS
T ss_pred hHHHHHHHHHc-----CCccHhhHHHHHHHHC--CCHHHHHHHHHHhc
Confidence 45577777643 4566678999888877 88888999887753
No 265
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=21.99 E-value=1.1e+02 Score=14.52 Aligned_cols=30 Identities=10% Similarity=0.182 Sum_probs=20.9
Q ss_pred ChHHHHHHHHHhhcCCCCCc----cCHHHHHHHHHHcCC
Q 047967 19 GKDGLMEDVFKVMDKDGDGR----LSHDDLKSYMNCASF 53 (81)
Q Consensus 19 ~~~~~~~~~F~~~D~~~~g~----i~~~el~~~l~~~g~ 53 (81)
.+.+.|...|.. .|+ .+..+...++..+|+
T Consensus 11 ~Q~~~Le~~fe~-----~~y~~~~~~~~~r~~la~~lgl 44 (58)
T TIGR01565 11 EQKEKMRDFAEK-----LGWKLKDKRREEVREFCEEIGV 44 (58)
T ss_pred HHHHHHHHHHHH-----cCCCCCCCCHHHHHHHHHHhCC
Confidence 345667777753 556 888888888888773
No 266
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=21.97 E-value=1.2e+02 Score=19.86 Aligned_cols=40 Identities=10% Similarity=0.202 Sum_probs=27.2
Q ss_pred cCCCCCccCHHHHHHHHHHcCCCCC----------HHHHHHHHHhhCCCC
Q 047967 32 DKDGDGRLSHDDLKSYMNCASFAAT----------DDDIEAMIRLGGGDE 71 (81)
Q Consensus 32 D~~~~g~i~~~el~~~l~~~g~~~~----------~~~~~~~~~~~d~~~ 71 (81)
+.+..+.++..+.+.+|..+|.+.. ..++..++......+
T Consensus 135 ~~~~~~~lp~~eR~~lLe~lg~~~v~~~~~~~~~d~~~l~~~l~~~~~~G 184 (342)
T cd07894 135 KKNTGRPLPVEERRELLEKYGLPTVRLFGEFTADEIEELKEIIRELDKEG 184 (342)
T ss_pred EcCCCCCCCHHHHHHHHHhcCCCCcceEEEEecCCHHHHHHHHHHHHHCC
Confidence 3344567889999999998875432 256677777765553
No 267
>PHA02142 putative RNA ligase
Probab=21.93 E-value=34 Score=22.64 Aligned_cols=29 Identities=7% Similarity=0.139 Sum_probs=23.0
Q ss_pred HHHhhcCCCCCccCHHHHHHHHHHcCCCC
Q 047967 27 VFKVMDKDGDGRLSHDDLKSYMNCASFAA 55 (81)
Q Consensus 27 ~F~~~D~~~~g~i~~~el~~~l~~~g~~~ 55 (81)
+|..++.+..++++..++..++..+|+..
T Consensus 274 vF~v~~i~~~~yl~~~e~~~~~~~~gl~~ 302 (366)
T PHA02142 274 AFRAWFIDEQRFATDEEFQDLCRTLGMEI 302 (366)
T ss_pred EEEEEEeccceeCCHHHHHHHHHHcCCce
Confidence 45555667778999999999999988654
No 268
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=21.72 E-value=1.3e+02 Score=15.92 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=10.3
Q ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 047967 40 SHDDLKSYMNCASFAATDDDIEAMIRL 66 (81)
Q Consensus 40 ~~~el~~~l~~~g~~~~~~~~~~~~~~ 66 (81)
...+..-.|.-+...++++++.++...
T Consensus 21 P~~Dy~PLlALL~r~Ltd~ev~~Va~~ 47 (96)
T PF11829_consen 21 PPTDYVPLLALLRRRLTDDEVAEVAAE 47 (96)
T ss_dssp -HHHHHHHHHHHTTTS-HHHHHHHHHH
T ss_pred CCCccHHHHHHhcccCCHHHHHHHHHH
Confidence 333343334434444444444444333
No 269
>KOG3341 consensus RNA polymerase II transcription factor complex subunit [Transcription]
Probab=21.56 E-value=2.2e+02 Score=17.76 Aligned_cols=39 Identities=18% Similarity=0.097 Sum_probs=25.3
Q ss_pred CCCccCHHHHHHH-HHHcCCC---CCHHHHHHHHHhhCCCCCC
Q 047967 35 GDGRLSHDDLKSY-MNCASFA---ATDDDIEAMIRLGGGDEND 73 (81)
Q Consensus 35 ~~g~i~~~el~~~-l~~~g~~---~~~~~~~~~~~~~d~~~~~ 73 (81)
+.|-|+.+|+.+- +..-+.. ++.+++.+.+...-.=|+|
T Consensus 113 nGGlislqel~~~l~~~R~~~~e~vt~dD~lrAi~kLk~LG~g 155 (249)
T KOG3341|consen 113 NGGLISLQELCNHLLQRRKKDHEAVTEDDLLRAIDKLKVLGSG 155 (249)
T ss_pred cCCeeeHHHHHHHHHHHhcccchhccHHHHHHHHHHhhccCCC
Confidence 3468999999984 4433333 5677777777766555555
No 270
>PHA02554 13 neck protein; Provisional
Probab=21.54 E-value=2.3e+02 Score=18.43 Aligned_cols=16 Identities=13% Similarity=0.137 Sum_probs=11.8
Q ss_pred CHHHHHH-HHHHcCCCC
Q 047967 40 SHDDLKS-YMNCASFAA 55 (81)
Q Consensus 40 ~~~el~~-~l~~~g~~~ 55 (81)
++.||+. +|+.+|.++
T Consensus 7 sp~eLkD~iLRrLGAPi 23 (311)
T PHA02554 7 NPRELKDYILRRLGAPI 23 (311)
T ss_pred CHHHHHHHHHHhcCCCe
Confidence 5678887 777888664
No 271
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=21.47 E-value=1.1e+02 Score=14.47 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=11.2
Q ss_pred CccCHHHHHHHHHHc-CCCCCHHHHHH
Q 047967 37 GRLSHDDLKSYMNCA-SFAATDDDIEA 62 (81)
Q Consensus 37 g~i~~~el~~~l~~~-g~~~~~~~~~~ 62 (81)
..++.++...++..+ .-..++.++--
T Consensus 13 ~~Ls~~e~~~~~~~i~~g~~s~~qiaA 39 (66)
T PF02885_consen 13 EDLSREEAKAAFDAILDGEVSDAQIAA 39 (66)
T ss_dssp ----HHHHHHHHHHHHTTSS-HHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHH
Confidence 466777777766654 22344444433
No 272
>COG4807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.42 E-value=1.2e+02 Score=17.29 Aligned_cols=38 Identities=16% Similarity=0.289 Sum_probs=23.9
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 047967 22 GLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGG 68 (81)
Q Consensus 22 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d 68 (81)
.+++-+|..=+ .++..++...+++++..|+..+|+.-+
T Consensus 91 kKLRiAf~lK~---------~Dm~~I~~~~~f~vS~pElsAlfR~~~ 128 (155)
T COG4807 91 KKLRIAFSLKT---------DDMLAILTEQQFRVSMPELSALFRAPD 128 (155)
T ss_pred HhHhHhhhccc---------chHHHHHhccCcccccHHHHHHHhCCC
Confidence 45665665322 356777777777777777777776544
No 273
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=21.27 E-value=1.4e+02 Score=15.61 Aligned_cols=28 Identities=11% Similarity=0.374 Sum_probs=18.1
Q ss_pred ccCHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047967 38 RLSHDDLKSYMNCASFAATDDDIEAMIR 65 (81)
Q Consensus 38 ~i~~~el~~~l~~~g~~~~~~~~~~~~~ 65 (81)
.|+.+++.++-+-....++.+++..+..
T Consensus 2 ~i~~e~v~~la~LarL~lseee~e~~~~ 29 (96)
T COG0721 2 AIDREEVKHLAKLARLELSEEELEKFAT 29 (96)
T ss_pred ccCHHHHHHHHHHhhcccCHHHHHHHHH
Confidence 4667777777776666777666665433
No 274
>PRK03430 hypothetical protein; Validated
Probab=21.12 E-value=1.9e+02 Score=16.83 Aligned_cols=41 Identities=17% Similarity=0.223 Sum_probs=28.3
Q ss_pred HHHHHhh-cCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 047967 25 EDVFKVM-DKDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLG 67 (81)
Q Consensus 25 ~~~F~~~-D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 67 (81)
.-+|..| +.+.+-+++..+|.+-|...| +.++++.+.+..+
T Consensus 6 ~YLFEnY~~~d~~~~pd~~~L~~~L~~aG--F~~~eI~~AL~WL 47 (157)
T PRK03430 6 MYLFETYIHNEAELRVDQDKLEDDLTDAG--FHREDIYNALLWL 47 (157)
T ss_pred hHHHHHhhccccccCCCHHHHHHHHHHcC--CCHHHHHHHHHHH
Confidence 3456543 345566889999999999988 5567777655543
No 275
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=21.08 E-value=97 Score=18.40 Aligned_cols=53 Identities=19% Similarity=0.355 Sum_probs=37.3
Q ss_pred CCCCCChHHHHHHH-HHhhcCCCCCccCHHHHHHHHHHcCCC----------CCHHHHHHHHHhhC
Q 047967 14 KSKSNGKDGLMEDV-FKVMDKDGDGRLSHDDLKSYMNCASFA----------ATDDDIEAMIRLGG 68 (81)
Q Consensus 14 ~~~~~~~~~~~~~~-F~~~D~~~~g~i~~~el~~~l~~~g~~----------~~~~~~~~~~~~~d 68 (81)
....+.+...+... +..+.+.+.||+ ++++.++..+|.+ +....++.++..+.
T Consensus 49 sp~tp~t~~~~~~~gv~vi~tpG~GYv--~Dl~~al~~l~~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 49 SPHTPKTKEYLESVGVKVIETPGEGYV--EDLRFALESLGTPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred CCCCHhHHHHHHhcCceEEEcCCCChH--HHHHHHHHhcCCceEEEecccccCCHHHHHHHHHHHh
Confidence 44456666667776 888888889986 7899999998844 24555666666655
No 276
>PF07261 DnaB_2: Replication initiation and membrane attachment; InterPro: IPR006343 This entry represents a domain found in several bacterial replication initiation and membrane attachment proteins, DnaB and DnaD. The DnaD protein is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA []. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria []. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and Plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication []. This domain tends to be found towards the C terminus of DnaB and DnaD proteins and is alpha helical in nature.; PDB: 2I5U_A 2ZC2_A.
Probab=20.98 E-value=98 Score=14.77 Aligned_cols=10 Identities=10% Similarity=0.142 Sum_probs=3.2
Q ss_pred CccCHHHHHH
Q 047967 37 GRLSHDDLKS 46 (81)
Q Consensus 37 g~i~~~el~~ 46 (81)
|.++..+...
T Consensus 11 ~~~s~~e~~~ 20 (77)
T PF07261_consen 11 RPPSPSEIEK 20 (77)
T ss_dssp SS--HHHHHH
T ss_pred CCCCHHHHHH
Confidence 3444444333
No 277
>cd08306 Death_FADD Fas-associated Death Domain protein-protein interaction domain. Death domain (DD) found in FAS-associated via death domain (FADD). FADD is a component of the death-inducing signaling complex (DISC) and serves as an adaptor in the signaling pathway of death receptor proteins. It modulates apoptosis as well as non-apoptotic processes such as cell cycle progression, survival, innate immune signaling, and hematopoiesis. FADD contains an N-terminal DED and a C-terminal DD. Its DD interacts with the DD of the activated death receptor, FAS, and its DED recruits the initiator caspases, caspase-8 and -10, to the DISC complex via a homotypic interaction with the N-terminal DED of the caspase. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain),
Probab=20.79 E-value=1.4e+02 Score=15.17 Aligned_cols=40 Identities=13% Similarity=0.079 Sum_probs=21.0
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHH
Q 047967 22 GLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAATDDDIE 61 (81)
Q Consensus 22 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~ 61 (81)
+.+..++..+-......-+...|..+|+..+.....+.++
T Consensus 43 eq~~~mL~~W~~~~g~~At~~~L~~aL~~~~l~~~ad~i~ 82 (86)
T cd08306 43 EQVRQSLREWKKIKKKEAKVADLIKALRDCQLNLVADLVE 82 (86)
T ss_pred HHHHHHHHHHHHhHCcchHHHHHHHHHHHcCcHHHHHHHH
Confidence 4455555444332223456667777777766544444333
No 278
>PF14754 IFR3_antag: Papain-like auto-proteinase
Probab=20.67 E-value=24 Score=20.64 Aligned_cols=35 Identities=11% Similarity=0.220 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCC
Q 047967 21 DGLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAA 55 (81)
Q Consensus 21 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~ 55 (81)
+.-++-.++++-...+|.++..-++-++-.+|..+
T Consensus 175 eaglrlyynhyreqrtgwlsktglrlwlgdlglgi 209 (249)
T PF14754_consen 175 EAGLRLYYNHYREQRTGWLSKTGLRLWLGDLGLGI 209 (249)
T ss_pred hhhhhhhhhhhhHhhcccccccchheeeccccccc
Confidence 34577788999888999999999999998877554
No 279
>cd08784 Death_DRs Death Domain of Death Receptors. Death domain (DD) found in death receptor proteins. Death receptors are members of the tumor necrosis factor (TNF) receptor superfamily, characterized by having a cytoplasmic DD. Known members of the family are Fas (CD95/APO-1), TNF-receptor 1 (TNFR1/TNFRSF1A/p55/CD120a), TNF-related apoptosis-inducing ligand receptor 1 (TRAIL-R1 /DR4), and receptor 2 (TRAIL-R2/DR5/APO-2/KILLER), as well as Death Receptor 3 (DR3/APO-3/TRAMP/WSL-1/LARD). They are involved in apoptosis signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=20.64 E-value=1.3e+02 Score=14.93 Aligned_cols=35 Identities=6% Similarity=0.087 Sum_probs=15.5
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHHcCCCCC
Q 047967 22 GLMEDVFKVMDKDGDGRLSHDDLKSYMNCASFAAT 56 (81)
Q Consensus 22 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~ 56 (81)
+.+..++..+-..+...-+...|..+|...|....
T Consensus 40 eq~~~mL~~W~~k~G~~At~~~L~~aL~~~~~~~~ 74 (79)
T cd08784 40 DRVYELLRIWRNKEGRKATLNTLIKALKDLDQRRT 74 (79)
T ss_pred HHHHHHHHHHHhccCcCcHHHHHHHHHHHcccHhH
Confidence 34444444443222223355555556655554433
No 280
>PRK10945 gene expression modulator; Provisional
Probab=20.58 E-value=1.4e+02 Score=15.04 Aligned_cols=27 Identities=15% Similarity=0.350 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 047967 40 SHDDLKSYMNCASFAATDDDIEAMIRL 66 (81)
Q Consensus 40 ~~~el~~~l~~~g~~~~~~~~~~~~~~ 66 (81)
+.+.|.+++......++..++..+...
T Consensus 20 s~eTLEkvie~~~~~L~~~E~~~f~~A 46 (72)
T PRK10945 20 TIDTLERVIEKNKYELSDDELAVFYSA 46 (72)
T ss_pred cHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 344555555555555555555544443
No 281
>PF10982 DUF2789: Protein of unknown function (DUF2789); InterPro: IPR021250 This bacterial family of proteins has no known function. ; PDB: 2KP6_A.
Probab=20.56 E-value=1.4e+02 Score=15.10 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=16.0
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhhCCC
Q 047967 42 DDLKSYMNCASFAATDDDIEAMIRLGGGD 70 (81)
Q Consensus 42 ~el~~~l~~~g~~~~~~~~~~~~~~~d~~ 70 (81)
..|...+..+|..-+...|...+..+...
T Consensus 6 h~l~~LF~QLGL~~~~~~I~~FI~~H~L~ 34 (74)
T PF10982_consen 6 HTLSNLFAQLGLDSSDEAIEAFIETHQLP 34 (74)
T ss_dssp THHHHHHHHHTS---HHHHHHHHHHS---
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHhCCCC
Confidence 35666667777777777777777776533
No 282
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=20.35 E-value=1.9e+02 Score=16.63 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=32.2
Q ss_pred HHHHHHHhhc-CCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 047967 23 LMEDVFKVMD-KDGDGRLSHDDLKSYMNCASFAATDDDIEAMIRLGG 68 (81)
Q Consensus 23 ~~~~~F~~~D-~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d 68 (81)
-+.-+|..|- .+.+-+.+..++..-|...| ...+++.+.+.-++
T Consensus 4 VL~yLfE~y~~~~~~~~~d~~~L~~~L~~aG--F~~~eI~~Al~WL~ 48 (155)
T PF04361_consen 4 VLMYLFENYIDFESDACPDQDDLTRELSAAG--FEDEEINKALDWLE 48 (155)
T ss_pred HHHHHHHHHcCCccccCCCHHHHHHHHHHcC--CCHHHHHHHHHHHH
Confidence 3455677764 34577889999999999988 66678887766654
No 283
>KOG3332 consensus N-acetylglucosaminyl phosphatidylinositol de-N-acetylase [Cell wall/membrane/envelope biogenesis]
Probab=20.34 E-value=97 Score=19.30 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=20.0
Q ss_pred cCCCCCccCHHHHHHHHHHcCCCC
Q 047967 32 DKDGDGRLSHDDLKSYMNCASFAA 55 (81)
Q Consensus 32 D~~~~g~i~~~el~~~l~~~g~~~ 55 (81)
..++-|++-..||.+++..+|.+.
T Consensus 77 N~dg~G~iR~kEL~ra~~~lgi~~ 100 (247)
T KOG3332|consen 77 NADGLGKIREKELHRACAVLGIPL 100 (247)
T ss_pred CccccchHHHHHHHHHHHHHCCch
Confidence 346788999999999999998763
No 284
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=20.34 E-value=1.3e+02 Score=18.46 Aligned_cols=19 Identities=11% Similarity=0.267 Sum_probs=10.7
Q ss_pred CCccCHHHHHHHHHHcCCC
Q 047967 36 DGRLSHDDLKSYMNCASFA 54 (81)
Q Consensus 36 ~g~i~~~el~~~l~~~g~~ 54 (81)
.|.++..++...|+..|.+
T Consensus 234 ~~~~~~~~~~~~~~~~gi~ 252 (254)
T TIGR00735 234 YREITIGEVKEYLAERGIP 252 (254)
T ss_pred CCCCCHHHHHHHHHHCCCc
Confidence 4555666666666555543
No 285
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=20.24 E-value=2.3e+02 Score=17.83 Aligned_cols=32 Identities=16% Similarity=0.371 Sum_probs=19.4
Q ss_pred CCCccCHHHHHHHHHHc----------------CCCCCHHHHHHHHHh
Q 047967 35 GDGRLSHDDLKSYMNCA----------------SFAATDDDIEAMIRL 66 (81)
Q Consensus 35 ~~g~i~~~el~~~l~~~----------------g~~~~~~~~~~~~~~ 66 (81)
.+|.|+.+.+++.+..+ +..+|.+|-.+++..
T Consensus 19 ~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~ 66 (296)
T TIGR03249 19 ADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEI 66 (296)
T ss_pred CCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHH
Confidence 35677777777666543 233566666666654
No 286
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=20.22 E-value=1.3e+02 Score=16.23 Aligned_cols=33 Identities=18% Similarity=0.469 Sum_probs=16.6
Q ss_pred CCCccCHHHHHHHHHHc--CCCCCHHHHHHHHHhh
Q 047967 35 GDGRLSHDDLKSYMNCA--SFAATDDDIEAMIRLG 67 (81)
Q Consensus 35 ~~g~i~~~el~~~l~~~--g~~~~~~~~~~~~~~~ 67 (81)
-||.++..|...+...+ ...++......++..+
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~ 70 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELA 70 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 46888888888766654 2233334444444433
No 287
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=20.12 E-value=1.9e+02 Score=16.41 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=15.9
Q ss_pred HHHHHHHcCCCCCHHHHHHHH
Q 047967 44 LKSYMNCASFAATDDDIEAMI 64 (81)
Q Consensus 44 l~~~l~~~g~~~~~~~~~~~~ 64 (81)
+..-..++|..++++++..++
T Consensus 95 l~~e~eklGi~Vs~~El~d~l 115 (145)
T PF13623_consen 95 LEQEFEKLGITVSDDELQDML 115 (145)
T ss_pred HHHHHHHhCCccCHHHHHHHH
Confidence 334445679999999998888
Done!