BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047968
(81 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DG7|A Chain A, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|B Chain B, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|C Chain C, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|D Chain D, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|E Chain E, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|F Chain F, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|G Chain G, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|H Chain H, Low Resolution Structure Of Drosophila Translin
Length = 255
Score = 78.2 bits (191), Expect = 1e-15, Method: Composition-based stats.
Identities = 34/67 (50%), Positives = 50/67 (74%)
Query: 2 RYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDM 61
R+ N V G+Y+ P + F+ DL+ FR+LNL+ND LRK+FD+LKYD+K++EEV YD+
Sbjct: 174 RFATNSVTMGDYERPLNISHFIGDLNTGFRLLNLKNDGLRKRFDALKYDVKKIEEVVYDV 233
Query: 62 KIRHLAN 68
IR L++
Sbjct: 234 SIRGLSS 240
>pdb|3AXJ|A Chain A, High Resolution Crystal Structure Of C3po
Length = 249
Score = 77.8 bits (190), Expect = 1e-15, Method: Composition-based stats.
Identities = 34/67 (50%), Positives = 50/67 (74%)
Query: 2 RYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDM 61
R+ N V G+Y+ P + F+ DL+ FR+LNL+ND LRK+FD+LKYD+K++EEV YD+
Sbjct: 168 RFATNSVTXGDYERPLNISHFIGDLNTGFRLLNLKNDGLRKRFDALKYDVKKIEEVVYDV 227
Query: 62 KIRHLAN 68
IR L++
Sbjct: 228 SIRGLSS 234
>pdb|3RIU|A Chain A, Crystal Structure Of Drosophila Hexameric C3po Formed By
Truncated Translin And Trax
pdb|3RIU|B Chain B, Crystal Structure Of Drosophila Hexameric C3po Formed By
Truncated Translin And Trax
Length = 218
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 47/64 (73%)
Query: 1 PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYD 60
R+ N V G+Y+ P + F+ DL+ FR+LNL+ND LRK+FD+LKYD+K++EEV YD
Sbjct: 154 SRFATNSVTXGDYERPLNISHFIGDLNTGFRLLNLKNDGLRKRFDALKYDVKKIEEVVYD 213
Query: 61 MKIR 64
+ IR
Sbjct: 214 VSIR 217
>pdb|2QRX|A Chain A, Crystal Structure Of Drosophila Melanogaster Translin
Protein
Length = 235
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 50/70 (71%)
Query: 1 PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYD 60
R+ N V G+Y+ + F+ DL+ FR+LNL+ND LRK+FD+LKYD+K++EEV YD
Sbjct: 153 SRFATNSVTMGDYERSLNISHFIGDLNTGFRLLNLKNDGLRKRFDALKYDVKKIEEVVYD 212
Query: 61 MKIRHLANGD 70
+ IR L++ +
Sbjct: 213 VSIRGLSSKE 222
>pdb|1KEY|A Chain A, Crystal Structure Of Mouse TestisBRAIN RNA-Binding Protein
(Tb-Rbp)
pdb|1KEY|B Chain B, Crystal Structure Of Mouse TestisBRAIN RNA-Binding Protein
(Tb-Rbp)
pdb|1KEY|C Chain C, Crystal Structure Of Mouse TestisBRAIN RNA-Binding Protein
(Tb-Rbp)
pdb|1KEY|D Chain D, Crystal Structure Of Mouse TestisBRAIN RNA-Binding Protein
(Tb-Rbp)
Length = 235
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 2 RYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDM 61
R VN V AG+Y P + F+ +L + FR+LNL+ND LRK++D LKYD+K+VEEV YD+
Sbjct: 160 RLSVNSVTAGDYSRPLHISTFINELDSGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDL 219
Query: 62 KIRHLANGDSAEDNG 76
IR N ++A G
Sbjct: 220 SIRGF-NKETAAACG 233
>pdb|2QVA|A Chain A, Crystal Structure Of Drosophila Melanogaster Translin
Protein
pdb|2QVA|B Chain B, Crystal Structure Of Drosophila Melanogaster Translin
Protein
pdb|2QVA|C Chain C, Crystal Structure Of Drosophila Melanogaster Translin
Protein
pdb|2QVA|D Chain D, Crystal Structure Of Drosophila Melanogaster Translin
Protein
Length = 247
Score = 74.7 bits (182), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/67 (49%), Positives = 49/67 (73%)
Query: 2 RYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDM 61
R+ N V G+Y+ + F+ DL+ FR+LNL+ND LRK+FD+LKYD+K++EEV YD+
Sbjct: 166 RFATNSVTMGDYERSLNISHFIGDLNTGFRLLNLKNDGLRKRFDALKYDVKKIEEVVYDV 225
Query: 62 KIRHLAN 68
IR L++
Sbjct: 226 SIRGLSS 232
>pdb|1J1J|A Chain A, Crystal Structure Of Human Translin
pdb|1J1J|B Chain B, Crystal Structure Of Human Translin
pdb|1J1J|C Chain C, Crystal Structure Of Human Translin
pdb|1J1J|D Chain D, Crystal Structure Of Human Translin
Length = 240
Score = 74.3 bits (181), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 46/64 (71%)
Query: 1 PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYD 60
R VN V AG+Y P + F+ +L + FR+LNL+ND LRK++D LKYD+K+VEEV YD
Sbjct: 164 SRLSVNSVTAGDYSRPLHISTFINELDSGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYD 223
Query: 61 MKIR 64
+ IR
Sbjct: 224 LSIR 227
>pdb|3PJA|A Chain A, Crystal Structure Of Human C3po Complex
pdb|3PJA|B Chain B, Crystal Structure Of Human C3po Complex
pdb|3PJA|C Chain C, Crystal Structure Of Human C3po Complex
pdb|3PJA|D Chain D, Crystal Structure Of Human C3po Complex
pdb|3PJA|E Chain E, Crystal Structure Of Human C3po Complex
pdb|3PJA|F Chain F, Crystal Structure Of Human C3po Complex
pdb|3PJA|G Chain G, Crystal Structure Of Human C3po Complex
pdb|3PJA|H Chain H, Crystal Structure Of Human C3po Complex
pdb|3PJA|I Chain I, Crystal Structure Of Human C3po Complex
pdb|3QB5|A Chain A, Human C3po Complex In The Presence Of Mnso4
pdb|3QB5|B Chain B, Human C3po Complex In The Presence Of Mnso4
pdb|3QB5|C Chain C, Human C3po Complex In The Presence Of Mnso4
Length = 228
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 46/63 (73%)
Query: 2 RYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDM 61
R VN V AG+Y P + F+ +L + FR+LNL+ND LRK++D LKYD+K+VEEV YD+
Sbjct: 153 RLSVNSVTAGDYSRPLHISTFINELDSGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDL 212
Query: 62 KIR 64
IR
Sbjct: 213 SIR 215
>pdb|3PJA|J Chain J, Crystal Structure Of Human C3po Complex
pdb|3PJA|K Chain K, Crystal Structure Of Human C3po Complex
pdb|3PJA|L Chain L, Crystal Structure Of Human C3po Complex
pdb|3QB5|K Chain K, Human C3po Complex In The Presence Of Mnso4
Length = 290
Score = 34.3 bits (77), Expect = 0.020, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 2 RYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDF-LRKKFDSLKYDLKRVEEVYYD 60
R +N V G+ D P +V +FL ++ F + + + KK +LK L +VE Y
Sbjct: 200 RMCINSVGNGDIDTPFEVSQFLRQVYDGFSFIGNTGPYEVSKKLYTLKQSLAKVENACYA 259
Query: 61 MKIR 64
+K+R
Sbjct: 260 LKVR 263
>pdb|2X53|S Chain S, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
pdb|2X53|T Chain T, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
pdb|2X53|U Chain U, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
pdb|2X53|V Chain V, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
pdb|2X53|W Chain W, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
pdb|2X53|X Chain X, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
Length = 298
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 32 MLNLRNDFLRKKFDSLKYDLKRVEEVYYDMKIRHLANGDSAEDNGT 77
M + ND L KKF +L+Y + + +VY D+ + + + NGT
Sbjct: 79 MKDFVNDILSKKFVTLEYQTE-IFQVYADLALADVTKTEGYGKNGT 123
>pdb|2X54|S Chain S, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X54|T Chain T, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X54|U Chain U, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X54|V Chain V, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X54|W Chain W, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X54|X Chain X, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X5A|S Chain S, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
pdb|2X5A|T Chain T, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
pdb|2X5A|U Chain U, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
pdb|2X5A|V Chain V, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
pdb|2X5A|W Chain W, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
pdb|2X5A|X Chain X, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
Length = 298
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 32 MLNLRNDFLRKKFDSLKYDLKRVEEVYYDMKIRHLANGDSAEDNGT 77
M + ND L KKF +L+Y + + +VY D+ + + + NGT
Sbjct: 79 MKDFVNDILSKKFVTLEYQTE-IFQVYADLALADVTKTEGYGKNGT 123
>pdb|2WZP|P Chain P, Structures Of Lactococcal Phage P2 Baseplate Shed Light On
A Novel Mechanism Of Host Attachment And Activation In
Siphoviridae
pdb|2WZP|Q Chain Q, Structures Of Lactococcal Phage P2 Baseplate Shed Light On
A Novel Mechanism Of Host Attachment And Activation In
Siphoviridae
Length = 326
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 32 MLNLRNDFLRKKFDSLKYDLKRVEEVYYDMKIRHLANGDSAEDNGT 77
M + ND L KKF +L+Y + + +VY D+ + + + NGT
Sbjct: 107 MKDFVNDILSKKFVTLEYQTE-IFQVYADLALADVTKTEGYGKNGT 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,424,509
Number of Sequences: 62578
Number of extensions: 79305
Number of successful extensions: 173
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 163
Number of HSP's gapped (non-prelim): 14
length of query: 81
length of database: 14,973,337
effective HSP length: 50
effective length of query: 31
effective length of database: 11,844,437
effective search space: 367177547
effective search space used: 367177547
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)