Query 047968
Match_columns 81
No_of_seqs 101 out of 154
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 05:01:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047968.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047968hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3067 Translin family protei 100.0 1.6E-29 3.4E-34 186.3 2.3 70 1-70 151-220 (226)
2 PF01997 Translin: Translin fa 99.9 1.6E-25 3.5E-30 160.3 1.8 66 1-66 130-200 (200)
3 PRK14562 haloacid dehalogenase 99.7 3.4E-17 7.4E-22 118.8 2.1 68 1-68 126-197 (204)
4 KOG3066 Translin-associated pr 99.6 1.5E-16 3.2E-21 120.0 3.8 70 1-70 181-253 (271)
5 COG2178 Predicted RNA-binding 95.7 0.016 3.5E-07 43.2 4.0 55 2-56 126-183 (204)
6 PF11473 B2: RNA binding prote 81.9 2 4.3E-05 27.5 3.0 46 14-61 10-55 (73)
7 PF10046 BLOC1_2: Biogenesis o 76.8 3 6.5E-05 27.0 2.8 43 19-61 40-85 (99)
8 PF14565 IL22: Interleukin 22 67.6 18 0.00038 25.7 5.0 40 17-56 77-118 (139)
9 PRK14127 cell division protein 63.7 20 0.00043 24.2 4.5 42 16-57 25-66 (109)
10 KOG4032 Uncharacterized conser 57.5 14 0.00031 27.3 3.2 45 10-56 81-126 (184)
11 TIGR01837 PHA_granule_1 poly(h 54.7 40 0.00087 22.5 4.8 36 21-56 78-117 (118)
12 PF13556 HTH_30: PucR C-termin 50.3 15 0.00034 21.2 2.0 21 38-58 20-40 (59)
13 COG1792 MreC Cell shape-determ 44.0 59 0.0013 24.8 4.9 44 13-56 51-94 (284)
14 PRK00222 methionine sulfoxide 43.3 9.3 0.0002 27.0 0.4 12 1-12 115-126 (142)
15 PF15605 Toxin_52: Putative to 43.0 69 0.0015 21.7 4.5 37 22-58 48-101 (103)
16 PF10205 KLRAQ: Predicted coil 40.1 42 0.0009 22.6 3.1 35 22-56 41-75 (102)
17 COG3937 Uncharacterized conser 40.1 71 0.0015 21.8 4.2 20 38-57 86-105 (108)
18 PF08606 Prp19: Prp19/Pso4-lik 39.6 52 0.0011 20.9 3.3 34 19-52 6-39 (70)
19 PF11690 DUF3287: Protein of u 39.0 56 0.0012 22.2 3.6 30 18-47 39-68 (109)
20 PF12699 phiKZ_IP: phiKZ-like 36.1 75 0.0016 24.7 4.4 41 19-59 70-110 (339)
21 cd01145 TroA_c Periplasmic bin 35.5 1.6E+02 0.0034 20.7 5.8 43 14-56 112-155 (203)
22 PF10393 Matrilin_ccoil: Trime 35.2 69 0.0015 18.6 3.2 40 11-50 6-45 (47)
23 PRK11760 putative 23S rRNA C24 35.0 34 0.00074 27.5 2.4 59 13-72 279-347 (357)
24 PF00170 bZIP_1: bZIP transcri 34.7 85 0.0018 18.3 3.6 36 21-56 26-61 (64)
25 PF00159 Hormone_3: Pancreatic 34.7 73 0.0016 17.6 3.1 23 11-33 9-31 (36)
26 cd01016 TroA Metal binding pro 34.4 1.7E+02 0.0036 21.7 5.9 42 15-56 106-148 (276)
27 PF04678 DUF607: Protein of un 34.2 82 0.0018 22.2 4.0 46 13-58 32-80 (180)
28 PF02344 Myc-LZ: Myc leucine z 33.9 66 0.0014 17.6 2.7 21 38-58 11-31 (32)
29 COG3599 DivIVA Cell division i 32.8 81 0.0018 23.4 4.0 45 14-58 23-67 (212)
30 COG5420 Uncharacterized conser 31.8 37 0.0008 21.6 1.7 16 42-57 55-70 (71)
31 smart00338 BRLZ basic region l 31.4 1.1E+02 0.0024 17.7 3.8 37 21-57 26-62 (65)
32 PF05103 DivIVA: DivIVA protei 29.9 19 0.00042 23.2 0.2 43 16-58 20-62 (131)
33 cd01020 TroA_b Metal binding p 29.6 2.1E+02 0.0046 20.9 5.7 43 14-56 99-142 (264)
34 COG4367 Uncharacterized protei 29.2 1.1E+02 0.0023 20.6 3.6 42 16-57 5-46 (97)
35 cd03737 SOCS_SOCS3 SOCS (suppr 28.8 21 0.00046 20.3 0.2 24 2-25 11-37 (42)
36 PF11369 DUF3160: Protein of u 28.3 1.8E+02 0.0038 25.1 5.7 42 17-58 472-513 (630)
37 PF06825 HSBP1: Heat shock fac 28.3 61 0.0013 19.4 2.2 35 18-52 7-45 (54)
38 PF03954 Lectin_N: Hepatic lec 28.2 57 0.0012 23.1 2.3 38 20-57 72-109 (138)
39 PF04124 Dor1: Dor1-like famil 27.9 1E+02 0.0022 23.6 3.9 27 6-32 115-141 (338)
40 PF05597 Phasin: Poly(hydroxya 27.8 1.9E+02 0.0042 19.9 4.9 35 22-56 92-130 (132)
41 TIGR01557 myb_SHAQKYF myb-like 27.4 26 0.00055 20.8 0.4 20 4-23 17-36 (57)
42 PF01297 TroA: Periplasmic sol 27.1 2.4E+02 0.0051 20.1 5.6 42 15-56 97-139 (256)
43 TIGR02978 phageshock_pspC phag 26.7 84 0.0018 21.4 2.9 21 38-58 87-107 (121)
44 cd01137 PsaA Metal binding pro 26.7 2.6E+02 0.0057 20.8 5.8 40 15-54 122-162 (287)
45 PF07106 TBPIP: Tat binding pr 26.3 2.2E+02 0.0047 19.5 5.6 44 18-61 90-135 (169)
46 PF00586 AIRS: AIR synthase re 25.9 1.2E+02 0.0026 18.5 3.3 33 2-34 56-88 (96)
47 smart00037 CNX Connexin homolo 25.7 19 0.00041 20.0 -0.3 9 54-62 19-27 (34)
48 PF06008 Laminin_I: Laminin Do 24.4 2E+02 0.0043 21.1 4.8 54 9-62 12-65 (264)
49 PF07438 DUF1514: Protein of u 24.3 86 0.0019 19.7 2.4 23 28-50 10-33 (66)
50 PRK13169 DNA replication intia 24.1 1.1E+02 0.0024 20.5 3.1 29 26-54 6-34 (110)
51 PRK09545 znuA high-affinity zi 24.0 2.7E+02 0.0059 21.1 5.6 41 15-55 150-191 (311)
52 PRK10697 DNA-binding transcrip 23.8 1.1E+02 0.0023 21.0 3.0 21 38-58 84-104 (118)
53 KOG3684 Ca2+-activated K+ chan 23.4 2E+02 0.0043 24.3 5.0 49 14-62 420-468 (489)
54 COG2508 Regulator of polyketid 23.2 61 0.0013 25.3 1.9 19 40-58 376-394 (421)
55 PF07710 P53_tetramer: P53 tet 23.2 39 0.00085 19.4 0.7 14 55-68 7-20 (42)
56 PF14129 DUF4296: Domain of un 23.1 22 0.00048 22.2 -0.4 15 52-66 8-22 (87)
57 PF06526 DUF1107: Protein of u 23.1 38 0.00082 21.1 0.6 15 15-29 8-22 (64)
58 COG5051 RPL36A Ribosomal prote 22.6 93 0.002 20.8 2.4 20 38-57 71-90 (97)
59 cd01019 ZnuA Zinc binding prot 22.3 3.2E+02 0.0069 20.3 5.6 41 15-55 126-167 (286)
60 PF06156 DUF972: Protein of un 22.3 1.3E+02 0.0029 19.9 3.2 9 43-51 23-31 (107)
61 TIGR02132 phaR_Bmeg polyhydrox 22.0 2.6E+02 0.0055 20.9 4.9 23 36-58 108-130 (189)
62 PLN02751 glutamyl-tRNA(Gln) am 21.6 1.2E+02 0.0026 25.7 3.5 33 5-37 217-249 (544)
63 KOG1924 RhoA GTPase effector D 21.4 1.3E+02 0.0028 27.6 3.7 30 38-67 897-926 (1102)
64 PRK05550 bifunctional methioni 21.3 33 0.00072 26.6 0.1 10 2-11 107-116 (283)
65 PF07789 DUF1627: Protein of u 21.3 82 0.0018 22.8 2.1 22 37-62 122-143 (155)
66 PF13851 GAS: Growth-arrest sp 20.7 1.7E+02 0.0036 21.2 3.7 42 20-61 128-169 (201)
67 cd00126 PAH Pancreatic Hormone 20.6 1.7E+02 0.0037 16.2 3.0 24 10-33 8-31 (36)
68 cd01018 ZntC Metal binding pro 20.1 3.5E+02 0.0077 19.7 5.9 40 15-54 117-157 (266)
No 1
>KOG3067 consensus Translin family protein [General function prediction only]
Probab=99.95 E-value=1.6e-29 Score=186.30 Aligned_cols=70 Identities=59% Similarity=0.930 Sum_probs=67.5
Q ss_pred CceeeeecccCCchhHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhhhheeEeecccCCC
Q 047968 1 PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDMKIRHLANGD 70 (81)
Q Consensus 1 ~R~aiN~vt~Gd~~~p~~i~~fvr~l~~gF~~Lnlkn~~LrkK~d~lKyslkKvE~v~YdL~lRg~~~~~ 70 (81)
+|+++|+||.|||++|+.++.|+.++|++|++||||||.||||||+|||||||+|+|+||++|||+...+
T Consensus 151 sR~svNsVtaGdY~~Pl~v~~fi~dlhs~FrlLnLKndsLRK~fDgLkYDlkrvEeVvYDv~Irgl~~ep 220 (226)
T KOG3067|consen 151 SRQSVNSVTAGDYHRPLHVSNFINDLHSGFRLLNLKNDSLRKRFDGLKYDLKRVEEVVYDVSIRGLVDEP 220 (226)
T ss_pred HHhhhccccccCcCCchHHHHHHhhhcccceeeeccchhhhccccchhhhHHhhhhhheeeeeecccCCc
Confidence 6999999999999999999999999999999999999999999999999999999999999999998433
No 2
>PF01997 Translin: Translin family; InterPro: IPR002848 Translins are DNA-binding proteins that specifically recognise consensus sequences at the breakpoint junctions in chromosomal translocations, mostly involving immunoglobulin (Ig)/T-cell receptor gene segments. They seem to recognise single-stranded DNA ends generated by staggered breaks occuring at recombination hot spots []. Translin folds into an alpha-alpha superhelix, consisting of two curved layers of alpha/alpha topology [, ].; GO: 0043565 sequence-specific DNA binding; PDB: 3QB5_K 3PJA_L 1J1J_D 3RIU_C 3AXJ_B 4DG7_C 2QVA_C 2QRX_A 1KEY_C.
Probab=99.91 E-value=1.6e-25 Score=160.34 Aligned_cols=66 Identities=53% Similarity=0.932 Sum_probs=62.9
Q ss_pred CceeeeecccCCchhHHHHHHHHHHHHHHHHhccc-----CChHHHHHHHHHHHHHHHHHhhhheeEeecc
Q 047968 1 PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNL-----RNDFLRKKFDSLKYDLKRVEEVYYDMKIRHL 66 (81)
Q Consensus 1 ~R~aiN~vt~Gd~~~p~~i~~fvr~l~~gF~~Lnl-----kn~~LrkK~d~lKyslkKvE~v~YdL~lRg~ 66 (81)
+|||||+|+.||++.|++|++||++||.+|..||+ +|++||||+|+|||+|+|+|++||+++|||+
T Consensus 130 ~R~ai~~v~~gd~~~~~~i~~f~~~l~~~~~~l~~~~~~~~n~~LrkK~d~~k~~l~KvE~~~y~l~vRgs 200 (200)
T PF01997_consen 130 MRYAINSVTKGDYERPEKILEFMRELYSGFQLLNLPDAIVKNDELRKKFDVLKYSLKKVEEVVYDLSVRGS 200 (200)
T ss_dssp HHHHHHHHHTT-SSHHHHHHHHHHHHHHHHHTSGGTTGS--SHHHHHHHHCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhccchhhHHHHHHHHHHHHHHHHhCcchhhcccchhHHHHHHHHHHHHHHHHHHhHhhhhcCC
Confidence 59999999999999999999999999999999999 9999999999999999999999999999996
No 3
>PRK14562 haloacid dehalogenase superfamily protein; Provisional
Probab=99.65 E-value=3.4e-17 Score=118.85 Aligned_cols=68 Identities=19% Similarity=0.281 Sum_probs=62.8
Q ss_pred CceeeeecccCCchhHHHHHHHHHHHHHHHHhcccCCh---HHHHHHHHHHHHHHHH-HhhhheeEeecccC
Q 047968 1 PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRND---FLRKKFDSLKYDLKRV-EEVYYDMKIRHLAN 68 (81)
Q Consensus 1 ~R~aiN~vt~Gd~~~p~~i~~fvr~l~~gF~~Lnlkn~---~LrkK~d~lKyslkKv-E~v~YdL~lRg~~~ 68 (81)
+|+|+|+++.||++.|.+|++||++||++|..||++|+ +||||+|++||+|+|+ ++++|.+..++++.
T Consensus 126 ~R~al~~l~~gd~~~~~~i~~fm~~ly~~~~~l~~~~~~~~~LRkK~D~~r~~lekt~~d~~~~~~~~~l~~ 197 (204)
T PRK14562 126 RRHILELLRKGEIEEAEKLLEIMEEIYEFLMTLDYPDAITPGLRRKQDVARSLLERTRGDLTNAILNRKLEE 197 (204)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999998 9999999999999999 66888877766553
No 4
>KOG3066 consensus Translin-associated protein X [General function prediction only]
Probab=99.63 E-value=1.5e-16 Score=119.99 Aligned_cols=70 Identities=17% Similarity=0.263 Sum_probs=65.6
Q ss_pred CceeeeecccCCchhHHHHHHHHHHHHHHHHhcccC---ChHHHHHHHHHHHHHHHHHhhhheeEeecccCCC
Q 047968 1 PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLR---NDFLRKKFDSLKYDLKRVEEVYYDMKIRHLANGD 70 (81)
Q Consensus 1 ~R~aiN~vt~Gd~~~p~~i~~fvr~l~~gF~~Lnlk---n~~LrkK~d~lKyslkKvE~v~YdL~lRg~~~~~ 70 (81)
+|+|||+++.|+++.|+++|+|+|+||.+|.....+ ..+|.+|+.+|+||+.|||++||.+.|||++..+
T Consensus 181 MRm~I~~~s~g~I~~~~~~~qFlRq~h~~~s~i~~~~~~~ye~~~Kl~vm~qSi~KvEnaCys~~vRg~e~~~ 253 (271)
T KOG3066|consen 181 MRMLITNGSKGSIQQLTQQVQFLRQLHKNCSEIEHLPSKKYELQQKLSVMEQSISKVENACYSKIVRGAEKRY 253 (271)
T ss_pred HHHHHhcCcCcchhhHHHHHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHHHHHHHHhHHHHHHhccccccc
Confidence 599999999999999999999999999999999665 4789999999999999999999999999999653
No 5
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=95.70 E-value=0.016 Score=43.20 Aligned_cols=55 Identities=20% Similarity=0.344 Sum_probs=48.8
Q ss_pred ceeeeecccCCchhHHHHHHHHHHHHHHHHhcccCC---hHHHHHHHHHHHHHHHHHh
Q 047968 2 RYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRN---DFLRKKFDSLKYDLKRVEE 56 (81)
Q Consensus 2 R~aiN~vt~Gd~~~p~~i~~fvr~l~~gF~~Lnlkn---~~LrkK~d~lKyslkKvE~ 56 (81)
|+++..+..|+++.+.+..+|+.+||.....|+..- +.||+|.|...+.+.|...
T Consensus 126 R~~le~l~~~~~~~Ae~~~~~ME~lY~~Lm~fdyP~~l~~~LR~K~Dvar~~lekt~~ 183 (204)
T COG2178 126 RHVLELLRKGSFEEAERFLKFMEKLYEELMEFDYPKALVPGLRQKQDVARSLLEKTKS 183 (204)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHH
Confidence 566677789999999999999999999999997752 6899999999999999875
No 6
>PF11473 B2: RNA binding protein B2; InterPro: IPR024377 Protein B2 binds double-strand RNA (dsRNA) with high affinity and suppresses the host RNA silencing-based antiviral response. B2 is expressed by the insect Flock House virus (FHV) as a counter-defense mechanism against antiviral RNA silencing during infection. In vitro, B2 binds to dsRNA as a dimer and inhibits the cleavage of it by Dicer. B2 blocks cleavage of the FHV genome by Dicer and also the incorporation of FHV small interfering RNAs into the RNA-induced silencing complex [].; PDB: 2AZ2_A 2B9Z_A 2AZ0_A.
Probab=81.94 E-value=2 Score=27.47 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhhhhee
Q 047968 14 DCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDM 61 (81)
Q Consensus 14 ~~p~~i~~fvr~l~~gF~~Lnlkn~~LrkK~d~lKyslkKvE~v~YdL 61 (81)
+.|.+|+.-|+.+.+.--.-. ....+|-+|.+|-.|.|+|.+|+..
T Consensus 10 ~lp~~iq~aV~~~~~~~~~~~--p~~V~kDLdn~kaCL~K~e~T~~r~ 55 (73)
T PF11473_consen 10 ELPDRIQQAVEAAIDMSYQCA--PNNVRKDLDNYKACLNKAEATVFRA 55 (73)
T ss_dssp CHHHHHHHHHHHHHCS-GTTS---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcccC--chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888887754322111 2468999999999999999999854
No 7
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=76.77 E-value=3 Score=27.02 Aligned_cols=43 Identities=14% Similarity=0.295 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhcccCC---hHHHHHHHHHHHHHHHHHhhhhee
Q 047968 19 VLRFLTDLHAAFRMLNLRN---DFLRKKFDSLKYDLKRVEEVYYDM 61 (81)
Q Consensus 19 i~~fvr~l~~gF~~Lnlkn---~~LrkK~d~lKyslkKvE~v~YdL 61 (81)
+-+.+.++......|+-+. .+..+++|.+-.+|.++|.++|.|
T Consensus 40 ~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~L 85 (99)
T PF10046_consen 40 MKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYEL 85 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555443 456668888888999999999865
No 8
>PF14565 IL22: Interleukin 22 IL-10-related T-cell-derived-inducible factor; PDB: 1M4R_A 1YKB_F 3G9V_D 3DGC_M 3Q1S_I 3DLQ_I.
Probab=67.65 E-value=18 Score=25.69 Aligned_cols=40 Identities=20% Similarity=0.506 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHhcccC--ChHHHHHHHHHHHHHHHHHh
Q 047968 17 RKVLRFLTDLHAAFRMLNLR--NDFLRKKFDSLKYDLKRVEE 56 (81)
Q Consensus 17 ~~i~~fvr~l~~gF~~Lnlk--n~~LrkK~d~lKyslkKvE~ 56 (81)
..+..|+..|...+...... +....|+++.||..++|+++
T Consensus 77 ~~v~~Fla~ls~kLs~C~~~~~~~hi~rn~~~lk~~~kkLGe 118 (139)
T PF14565_consen 77 QEVVSFLANLSSKLSQCHINGDDQHIQRNVEQLKDKVKKLGE 118 (139)
T ss_dssp HHHHHHHHHHHHHHTT---SS-SHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHhccccccCCCcHHHHHHHHHHHHHHHHHhh
Confidence 46788999999999998776 45689999999999999976
No 9
>PRK14127 cell division protein GpsB; Provisional
Probab=63.71 E-value=20 Score=24.23 Aligned_cols=42 Identities=17% Similarity=0.270 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhh
Q 047968 16 PRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEV 57 (81)
Q Consensus 16 p~~i~~fvr~l~~gF~~Lnlkn~~LrkK~d~lKyslkKvE~v 57 (81)
|-.+-.|+.+|-..|..|.-.|..|+.+...|+..|...+.-
T Consensus 25 ~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~ 66 (109)
T PRK14127 25 QDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQ 66 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567889999999999999888999999999999999888874
No 10
>KOG4032 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.55 E-value=14 Score=27.32 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=35.6
Q ss_pred cCCchhHHHHHHHHHHHHHHHHhcccC-ChHHHHHHHHHHHHHHHHHh
Q 047968 10 AGNYDCPRKVLRFLTDLHAAFRMLNLR-NDFLRKKFDSLKYDLKRVEE 56 (81)
Q Consensus 10 ~Gd~~~p~~i~~fvr~l~~gF~~Lnlk-n~~LrkK~d~lKyslkKvE~ 56 (81)
.++-+.+.+||.++-+++..+...|.. -..|..|+- |+.+||-+.
T Consensus 81 ~~eDDS~~~ia~~L~n~f~~~~~~N~~~ieells~l~--~q~~kkt~~ 126 (184)
T KOG4032|consen 81 KVEDDSLPEIAQLLLNLFHDIQNGNYAIIEELLSKLP--KQDLKKTKT 126 (184)
T ss_pred cccCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHcc--hhhhhhhee
Confidence 377788999999999999998888875 366777776 788877553
No 11
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=54.67 E-value=40 Score=22.50 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhcccCC----hHHHHHHHHHHHHHHHHHh
Q 047968 21 RFLTDLHAAFRMLNLRN----DFLRKKFDSLKYDLKRVEE 56 (81)
Q Consensus 21 ~fvr~l~~gF~~Lnlkn----~~LrkK~d~lKyslkKvE~ 56 (81)
.|-..+...+..|++.. +.|+.|+|.|...|.++++
T Consensus 78 ~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~~ 117 (118)
T TIGR01837 78 AFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEELRR 117 (118)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566777788888763 7899999999999998876
No 12
>PF13556 HTH_30: PucR C-terminal helix-turn-helix domain; PDB: 3ONQ_B.
Probab=50.34 E-value=15 Score=21.23 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 047968 38 DFLRKKFDSLKYDLKRVEEVY 58 (81)
Q Consensus 38 ~~LrkK~d~lKyslkKvE~v~ 58 (81)
..|-=.-.|++|-++|||+++
T Consensus 20 ~~L~iHrNTl~yRl~ki~~l~ 40 (59)
T PF13556_consen 20 RALHIHRNTLRYRLKKIEELL 40 (59)
T ss_dssp HHHTS-HHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 344445689999999999974
No 13
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=44.00 E-value=59 Score=24.77 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=31.3
Q ss_pred chhHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHh
Q 047968 13 YDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEE 56 (81)
Q Consensus 13 ~~~p~~i~~fvr~l~~gF~~Lnlkn~~LrkK~d~lKyslkKvE~ 56 (81)
+..|...++.+-+-...|..+...|..||++...+++.+.+++.
T Consensus 51 ~~~p~~~v~~~~~~~~~~~~~~~en~~Lk~~l~~~~~~~~~~~~ 94 (284)
T COG1792 51 VAAPFEFVDGVLEFLKSLKDLALENEELKKELAELEQLLEEVES 94 (284)
T ss_pred HhhHHHHHHhHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666677788899988888877777654
No 14
>PRK00222 methionine sulfoxide reductase B; Provisional
Probab=43.30 E-value=9.3 Score=27.03 Aligned_cols=12 Identities=25% Similarity=0.277 Sum_probs=9.6
Q ss_pred CceeeeecccCC
Q 047968 1 PRYVVNQVLAGN 12 (81)
Q Consensus 1 ~R~aiN~vt~Gd 12 (81)
.|||||+++..=
T Consensus 115 ~RyCINs~sL~F 126 (142)
T PRK00222 115 LRYCINSASLKF 126 (142)
T ss_pred CEeeeceeeEEe
Confidence 399999998643
No 15
>PF15605 Toxin_52: Putative toxin 52
Probab=42.96 E-value=69 Score=21.71 Aligned_cols=37 Identities=27% Similarity=0.522 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcc---------cCChH--------HHHHHHHHHHHHHHHHhhh
Q 047968 22 FLTDLHAAFRMLN---------LRNDF--------LRKKFDSLKYDLKRVEEVY 58 (81)
Q Consensus 22 fvr~l~~gF~~Ln---------lkn~~--------LrkK~d~lKyslkKvE~v~ 58 (81)
-|+++...++.|. ++|+. |-+|++..-+-++|||+.+
T Consensus 48 HlqEm~da~~GL~n~~~~le~~L~np~l~~~~r~~lq~~l~ea~~~l~kiE~~~ 101 (103)
T PF15605_consen 48 HLQEMQDAYRGLVNRKRTLEGSLKNPNLSGRTRELLQSKLNEANNYLDKIEDFF 101 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555552 55555 7889999999999999864
No 16
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=40.07 E-value=42 Score=22.62 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHh
Q 047968 22 FLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEE 56 (81)
Q Consensus 22 fvr~l~~gF~~Lnlkn~~LrkK~d~lKyslkKvE~ 56 (81)
-+|.+...-..|+++|+-|-||+..|..++...+.
T Consensus 41 ~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~~ 75 (102)
T PF10205_consen 41 ALRKLEQENDSLTFRNQQLTKRVEVLQEELEESEQ 75 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56778888889999999999999999999985544
No 17
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=40.07 E-value=71 Score=21.83 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q 047968 38 DFLRKKFDSLKYDLKRVEEV 57 (81)
Q Consensus 38 ~~LrkK~d~lKyslkKvE~v 57 (81)
++|+-++|.|+..|.++|+=
T Consensus 86 ~~l~~rvd~Lerqv~~Lenk 105 (108)
T COG3937 86 DELTERVDALERQVADLENK 105 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999973
No 18
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=39.59 E-value=52 Score=20.85 Aligned_cols=34 Identities=29% Similarity=0.449 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHH
Q 047968 19 VLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLK 52 (81)
Q Consensus 19 i~~fvr~l~~gF~~Lnlkn~~LrkK~d~lKyslk 52 (81)
|-..+..++..+..+=+-+-.||+.++.+++.|.
T Consensus 6 IP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs 39 (70)
T PF08606_consen 6 IPSLLSTLQNEWDALMLENFTLRKQLDQTRQELS 39 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777778899999999998764
No 19
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=39.00 E-value=56 Score=22.22 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHhcccCChHHHHHHHHH
Q 047968 18 KVLRFLTDLHAAFRMLNLRNDFLRKKFDSL 47 (81)
Q Consensus 18 ~i~~fvr~l~~gF~~Lnlkn~~LrkK~d~l 47 (81)
.+..|+..+-..-+.+......|++|++.|
T Consensus 39 ea~~F~~kV~~qH~~~~~e~r~L~kKi~~l 68 (109)
T PF11690_consen 39 EAYDFIDKVVDQHQRYCDERRKLRKKIQDL 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888788877778888888888
No 20
>PF12699 phiKZ_IP: phiKZ-like phage internal head proteins; InterPro: IPR024413 Phage internal head proteins (IP) are proteins that are encoded by a bacteriophage and assembled into the mature virion inside the capsid head. The most analogous characterised IP proteins are those of bacteriophage T4, which are known to be proteolytically processed during phage maturation, and then subsequently injected into the host cell during infection. The phiKZ_IP family consists of internal head proteins encoded by phiKZ-like phages. Each phage encodes three to six members of this family []. Members of the family reside in the head [] and are cleaved during phage maturation to separate an N-terminal propeptide from a C-terminal domain. The C-terminal domain remains in the mature capsid. The N-terminal propeptide domain is either mostly or completely removed from the mature capsid. In one case, an unrelated polypeptide is embedded in the propeptide and also remains in the mature capsid. The phiKZ-like IP proteins are not discernibly homologous to the T4 IP proteins, and it is not known if the phiKZ-like IP proteins are injected into the host cell, or have some other function within the head.
Probab=36.05 E-value=75 Score=24.72 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhhhh
Q 047968 19 VLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYY 59 (81)
Q Consensus 19 i~~fvr~l~~gF~~Lnlkn~~LrkK~d~lKyslkKvE~v~Y 59 (81)
|..++..+...|..+......+++|.+.|...++++|..=+
T Consensus 70 i~kl~~~l~~~~~~~~~~~~~~~~r~~~L~~~~~~l~~~~~ 110 (339)
T PF12699_consen 70 IKKLIADLKDYAVKFMSGIERVEERIDKLQERAKKLKKPDE 110 (339)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccCCC
Confidence 34455556667777777889999999999999999965444
No 21
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=35.50 E-value=1.6e+02 Score=20.68 Aligned_cols=43 Identities=12% Similarity=0.127 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHHHHHHHHhcccCC-hHHHHHHHHHHHHHHHHHh
Q 047968 14 DCPRKVLRFLTDLHAAFRMLNLRN-DFLRKKFDSLKYDLKRVEE 56 (81)
Q Consensus 14 ~~p~~i~~fvr~l~~gF~~Lnlkn-~~LrkK~d~lKyslkKvE~ 56 (81)
-.|.....+++.|...|..+++.| +..++.+..++..|.++++
T Consensus 112 ldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~ 155 (203)
T cd01145 112 LDPNNAPALAKALADALIELDPSEQEEYKENLRVFLAKLNKLLR 155 (203)
T ss_pred cCHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHH
Confidence 358888899999999999999986 4456666666666655543
No 22
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=35.20 E-value=69 Score=18.65 Aligned_cols=40 Identities=15% Similarity=0.235 Sum_probs=26.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHH
Q 047968 11 GNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYD 50 (81)
Q Consensus 11 Gd~~~p~~i~~fvr~l~~gF~~Lnlkn~~LrkK~d~lKys 50 (81)
-|.=.|..+..|=..+.+..+.|+-+-+.+.+|+..|.+.
T Consensus 6 edpC~CEslv~FQ~~v~~~lq~Lt~kL~~vs~RLe~LEn~ 45 (47)
T PF10393_consen 6 EDPCKCESLVAFQNKVTSALQSLTQKLDAVSKRLEALENR 45 (47)
T ss_dssp S-SS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444566788898999998887775556666666655543
No 23
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=34.99 E-value=34 Score=27.55 Aligned_cols=59 Identities=15% Similarity=0.329 Sum_probs=46.1
Q ss_pred chhHHHHHHHHHHHH----HHHHhcccCChHHHHHHHHHHHHHHHHHhhh------heeEeecccCCCCC
Q 047968 13 YDCPRKVLRFLTDLH----AAFRMLNLRNDFLRKKFDSLKYDLKRVEEVY------YDMKIRHLANGDSA 72 (81)
Q Consensus 13 ~~~p~~i~~fvr~l~----~gF~~Lnlkn~~LrkK~d~lKyslkKvE~v~------YdL~lRg~~~~~~~ 72 (81)
.+.|.++.+.+.+-. ...-.+|+|- +++++++++++.+..|++.+ |+|+++-+-...++
T Consensus 279 ve~P~rva~lm~~Wl~~g~cr~aIfnLKl-pmk~r~~~v~~~l~~i~~~l~~~g~~~~~~~khLyHdReE 347 (357)
T PRK11760 279 VEKPARVAELMAQWLVNGWCREAIFNLKL-PMKKRYEEVRQCLELIEEQLDENGINAQIQAKQLYHDREE 347 (357)
T ss_pred ccCHHHHHHHHHHHHhcCcccEEEEEEEc-CCCCCHHHHHHHHHHHHHHHHHcCCccceeeeeeecCCce
Confidence 466888888887765 3455678988 58999999999999999665 88898887765543
No 24
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=34.73 E-value=85 Score=18.27 Aligned_cols=36 Identities=19% Similarity=0.477 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHh
Q 047968 21 RFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEE 56 (81)
Q Consensus 21 ~fvr~l~~gF~~Lnlkn~~LrkK~d~lKyslkKvE~ 56 (81)
.-+.++......|.-.|+.|+..++.|+..+..+..
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777777888899999988888877764
No 25
>PF00159 Hormone_3: Pancreatic hormone peptide; InterPro: IPR001955 Pancreatic hormone (PP) [] is a peptide synthesized in pancreatic islets of Langherhans, which acts as a regulator of pancreatic and gastrointestinal functions. The hormone is produced as a larger propeptide, which is enzymatically cleaved to yield the mature active peptide: this is 36 amino acids in length [] and has an amidated C terminus []. The hormone has a globular structure, residues 2-8 forming a left-handed poly-proline-II-like helix, residues 9-13 a beta turn, and 14-32 an alpha-helix,held close to the first helix by hydrophobic interactions []. Unlike glucagon, another peptide hormone, the structure of pancreatic peptide is preserved in aqueous solution []. Both N and C termini are required for activity: receptor binding and activation functions may reside in the N and C termini respectively []. Pancreatic hormone is part of a wider family of active peptides that includes: Neuropeptide Y (NPY) [], one of the most abundant peptides in the mammalian nervous system. NPY is implicated in the control of feeding and the secretion of the gonadotrophin-releasing hormone. Peptide YY (PYY) []. PPY is a gut peptide that inhibits exocrine pancreatic secretion, has a vasoconstrictory action and inhibits jejunal and colonic mobility. Various NPY and PYY-like polypeptides from fish and amphibians [, ]. Neuropeptide F (NPF) from invertebrates such as worms and snail. Skin peptide Tyr-Tyr (SPYY) from the frog Phyllomedusa bicolor. SPYY shows a large spectra of antibacterial and antifungal activity. All these peptides are 36 to 39 amino acids long. Like most active peptides, their C-terminal is amidated and they are synthesized as larger protein precursors.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1LJV_A 1BBA_A 1V1D_A 1PPT_A 2H3T_A 2H4B_A 2BF9_A 2H3S_B 1K8V_A 2DF0_A ....
Probab=34.72 E-value=73 Score=17.64 Aligned_cols=23 Identities=13% Similarity=0.550 Sum_probs=19.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHhc
Q 047968 11 GNYDCPRKVLRFLTDLHAAFRML 33 (81)
Q Consensus 11 Gd~~~p~~i~~fvr~l~~gF~~L 33 (81)
||.+.|.++.+++++|..=|...
T Consensus 9 ~~~aspeel~~Y~~~L~~Y~~lv 31 (36)
T PF00159_consen 9 GDFASPEELAQYYAALRHYINLV 31 (36)
T ss_dssp STTSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Confidence 88999999999999998766554
No 26
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=34.37 E-value=1.7e+02 Score=21.66 Aligned_cols=42 Identities=5% Similarity=-0.027 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHHhcccCC-hHHHHHHHHHHHHHHHHHh
Q 047968 15 CPRKVLRFLTDLHAAFRMLNLRN-DFLRKKFDSLKYDLKRVEE 56 (81)
Q Consensus 15 ~p~~i~~fvr~l~~gF~~Lnlkn-~~LrkK~d~lKyslkKvE~ 56 (81)
.|.....+++.|...|..+++.| +..++.+..+...|+.++.
T Consensus 106 dp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~ 148 (276)
T cd01016 106 DVKLWKYAVKAVAEVLSEKLPEHKDEFQANSEAYVEELDSLDA 148 (276)
T ss_pred CHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHH
Confidence 36778899999999999999987 4556666666666555544
No 27
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=34.18 E-value=82 Score=22.24 Aligned_cols=46 Identities=22% Similarity=0.394 Sum_probs=33.0
Q ss_pred chhHHHHHHHHHHHHHHHHhcccC---ChHHHHHHHHHHHHHHHHHhhh
Q 047968 13 YDCPRKVLRFLTDLHAAFRMLNLR---NDFLRKKFDSLKYDLKRVEEVY 58 (81)
Q Consensus 13 ~~~p~~i~~fvr~l~~gF~~Lnlk---n~~LrkK~d~lKyslkKvE~v~ 58 (81)
+=.|-++.+.|..++..+..-+.. -..|+.+++.++..|+.+|+..
T Consensus 32 ~L~P~~v~~~v~~~~~~~~~~~~~~~~~~~l~~~l~~~~~el~~le~~k 80 (180)
T PF04678_consen 32 YLRPKQVKEAVHRLLPLLNVEEYQNSRERQLRKRLEELRQELAPLEKIK 80 (180)
T ss_pred eECHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446888888887777665433222 2568899999999999988753
No 28
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=33.95 E-value=66 Score=17.61 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 047968 38 DFLRKKFDSLKYDLKRVEEVY 58 (81)
Q Consensus 38 ~~LrkK~d~lKyslkKvE~v~ 58 (81)
+-||||-..||..|..+-+-|
T Consensus 11 eqLrrr~eqLK~kLeqlrnS~ 31 (32)
T PF02344_consen 11 EQLRRRREQLKHKLEQLRNSC 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 679999999999888776654
No 29
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=32.80 E-value=81 Score=23.43 Aligned_cols=45 Identities=27% Similarity=0.302 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhhh
Q 047968 14 DCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVY 58 (81)
Q Consensus 14 ~~p~~i~~fvr~l~~gF~~Lnlkn~~LrkK~d~lKyslkKvE~v~ 58 (81)
-.+-.+-.|+..|...|..|--.|..|+.+.+.|+..|+--.+..
T Consensus 23 y~~eEVdeFLD~V~~dye~~l~e~~~l~~~i~~L~~~l~~~~~~~ 67 (212)
T COG3599 23 YDEEEVDEFLDDVIDDYEQLLDENEDLEDEIDELKEELKEAADAE 67 (212)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 345678899999999999998778889999999999888665543
No 30
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=31.82 E-value=37 Score=21.55 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHhh
Q 047968 42 KKFDSLKYDLKRVEEV 57 (81)
Q Consensus 42 kK~d~lKyslkKvE~v 57 (81)
.-+|..|+.|+|+|+.
T Consensus 55 aeLD~~k~ELaklena 70 (71)
T COG5420 55 AELDAAKRELAKLENA 70 (71)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 4578999999999975
No 31
>smart00338 BRLZ basic region leucin zipper.
Probab=31.38 E-value=1.1e+02 Score=17.75 Aligned_cols=37 Identities=19% Similarity=0.385 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhh
Q 047968 21 RFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEV 57 (81)
Q Consensus 21 ~fvr~l~~gF~~Lnlkn~~LrkK~d~lKyslkKvE~v 57 (81)
..+.++......|.-.|..|+.+++.|...+..+.+.
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777788778999999999999888877654
No 32
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=29.92 E-value=19 Score=23.23 Aligned_cols=43 Identities=26% Similarity=0.402 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhhh
Q 047968 16 PRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVY 58 (81)
Q Consensus 16 p~~i~~fvr~l~~gF~~Lnlkn~~LrkK~d~lKyslkKvE~v~ 58 (81)
|-.+=.|+..|...+..|.-.|..|+.+...|+..+...++.-
T Consensus 20 ~~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~ 62 (131)
T PF05103_consen 20 PDEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEE 62 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 6778899999999999888777788888777777777665543
No 33
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=29.58 E-value=2.1e+02 Score=20.87 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHHHhcccCC-hHHHHHHHHHHHHHHHHHh
Q 047968 14 DCPRKVLRFLTDLHAAFRMLNLRN-DFLRKKFDSLKYDLKRVEE 56 (81)
Q Consensus 14 ~~p~~i~~fvr~l~~gF~~Lnlkn-~~LrkK~d~lKyslkKvE~ 56 (81)
-.|.....++..|...+..+++.| +..++.+..+...|..+++
T Consensus 99 ldp~n~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~ 142 (264)
T cd01020 99 YDPETMSKVANALADALVKADPDNKKYYQANAKKFVASLKPLAA 142 (264)
T ss_pred cCHhHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHH
Confidence 358888999999999999999987 4455666666665555543
No 34
>COG4367 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.21 E-value=1.1e+02 Score=20.63 Aligned_cols=42 Identities=19% Similarity=0.355 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhh
Q 047968 16 PRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEV 57 (81)
Q Consensus 16 p~~i~~fvr~l~~gF~~Lnlkn~~LrkK~d~lKyslkKvE~v 57 (81)
|.++..--.++.+.|.+.+|.-.++-+++....-.|.||+++
T Consensus 5 ~eq~~~Tk~elqan~el~~LS~~~iA~~Ln~t~~~lekil~~ 46 (97)
T COG4367 5 PEQKQRTKQELQANFELCPLSDEEIATALNWTEVKLEKILQV 46 (97)
T ss_pred HHHHHHHHHHHHHhhhhccccHHHHHHHhCCCHHHHHHHHHH
Confidence 667777788999999999999989999999988888888865
No 35
>cd03737 SOCS_SOCS3 SOCS (suppressors of cytokine signaling) box of SOCS3-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS3, like CIS1 and SOCS1, is involved in the down-regulation of the JAK/STAT pathway. SOCS3 inhibits JAK activity indirectly through recruitment to the cytokine receptors. SOCS3 has been shown to play an essential role in placental development and a non-essential role in embryo development. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=28.81 E-value=21 Score=20.30 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=15.9
Q ss_pred ceeeeecccC--Cc-hhHHHHHHHHHH
Q 047968 2 RYVVNQVLAG--NY-DCPRKVLRFLTD 25 (81)
Q Consensus 2 R~aiN~vt~G--d~-~~p~~i~~fvr~ 25 (81)
|.+||..+.+ .. ..|..+.+|+++
T Consensus 11 R~~In~~~~~~~~~~~LP~~Lk~yL~~ 37 (42)
T cd03737 11 RKTVNGHLDSYEKRTQLPLPIKEFLDQ 37 (42)
T ss_pred HHHHHHhcCcccchhhccHHHHHHHHh
Confidence 7788877543 23 567777777764
No 36
>PF11369 DUF3160: Protein of unknown function (DUF3160); InterPro: IPR022601 This group of proteins has no known function.
Probab=28.33 E-value=1.8e+02 Score=25.08 Aligned_cols=42 Identities=17% Similarity=0.205 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhhh
Q 047968 17 RKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVY 58 (81)
Q Consensus 17 ~~i~~fvr~l~~gF~~Lnlkn~~LrkK~d~lKyslkKvE~v~ 58 (81)
-++...++....+|...++-.+..+++++.|+.-+.++.++.
T Consensus 472 ~rl~~L~~~t~~~L~~~~ll~e~~~~~~~~l~~~~~~L~~Is 513 (630)
T PF11369_consen 472 ARLAALTRMTREGLKERNLLDEDSKKKLERLEDLLEFLKEIS 513 (630)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999999999999999999999999999998863
No 37
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=28.29 E-value=61 Score=19.38 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHhcc----cCChHHHHHHHHHHHHHH
Q 047968 18 KVLRFLTDLHAAFRMLN----LRNDFLRKKFDSLKYDLK 52 (81)
Q Consensus 18 ~i~~fvr~l~~gF~~Ln----lkn~~LrkK~d~lKyslk 52 (81)
-+-.++.++..-|+.+. .+-|++.+|+|.|..++.
T Consensus 7 ~v~~lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~ 45 (54)
T PF06825_consen 7 FVQNLLQQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIA 45 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34466777788888763 234666666666665553
No 38
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=28.18 E-value=57 Score=23.12 Aligned_cols=38 Identities=21% Similarity=0.266 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhh
Q 047968 20 LRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEV 57 (81)
Q Consensus 20 ~~fvr~l~~gF~~Lnlkn~~LrkK~d~lKyslkKvE~v 57 (81)
..|-....+.++.|+...+.+.+|+-+|+-.|.|.|.-
T Consensus 72 sNFssst~aEvqaL~S~G~sl~~kVtSLea~lEkqqQe 109 (138)
T PF03954_consen 72 SNFSSSTLAEVQALSSQGGSLQDKVTSLEAKLEKQQQE 109 (138)
T ss_pred hcccHHHHHHHHHHHhccccHHhHcccHHHHHHHHHHH
Confidence 46666777888889999999999999999999988763
No 39
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=27.86 E-value=1e+02 Score=23.57 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=23.8
Q ss_pred eecccCCchhHHHHHHHHHHHHHHHHh
Q 047968 6 NQVLAGNYDCPRKVLRFLTDLHAAFRM 32 (81)
Q Consensus 6 N~vt~Gd~~~p~~i~~fvr~l~~gF~~ 32 (81)
.+|..|.|++.+.+..|++.+..-|..
T Consensus 115 ~ci~~g~y~eALel~~~~~~L~~~~~~ 141 (338)
T PF04124_consen 115 TCIRNGNYSEALELSAHVRRLQSRFPN 141 (338)
T ss_pred HHHhcccHhhHHHHHHHHHHHHHhccC
Confidence 367889999999999999999988865
No 40
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=27.76 E-value=1.9e+02 Score=19.89 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcccCC----hHHHHHHHHHHHHHHHHHh
Q 047968 22 FLTDLHAAFRMLNLRN----DFLRKKFDSLKYDLKRVEE 56 (81)
Q Consensus 22 fvr~l~~gF~~Lnlkn----~~LrkK~d~lKyslkKvE~ 56 (81)
|=..|...+..|+... +.|+.|+|.|...|.++++
T Consensus 92 fd~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l~~ 130 (132)
T PF05597_consen 92 FDERVARALNRLGVPSRKDVEALSARIDQLTAQVERLAN 130 (132)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445667777787764 8899999999999988864
No 41
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=27.36 E-value=26 Score=20.84 Aligned_cols=20 Identities=15% Similarity=0.547 Sum_probs=16.4
Q ss_pred eeeecccCCchhHHHHHHHH
Q 047968 4 VVNQVLAGNYDCPRKVLRFL 23 (81)
Q Consensus 4 aiN~vt~Gd~~~p~~i~~fv 23 (81)
||..++.||..+|..|++++
T Consensus 17 ai~~~G~g~~a~pk~I~~~~ 36 (57)
T TIGR01557 17 AVQKLGGPDWATPKRILELM 36 (57)
T ss_pred HHHHhCCCcccchHHHHHHc
Confidence 56778889999999998754
No 42
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=27.09 E-value=2.4e+02 Score=20.15 Aligned_cols=42 Identities=17% Similarity=0.318 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHhcccCC-hHHHHHHHHHHHHHHHHHh
Q 047968 15 CPRKVLRFLTDLHAAFRMLNLRN-DFLRKKFDSLKYDLKRVEE 56 (81)
Q Consensus 15 ~p~~i~~fvr~l~~gF~~Lnlkn-~~LrkK~d~lKyslkKvE~ 56 (81)
.|.....+++.|...|..+++.| +..++.+..+...|++++.
T Consensus 97 dp~~~~~~~~~Ia~~L~~~~P~~~~~y~~N~~~~~~~L~~l~~ 139 (256)
T PF01297_consen 97 DPENAKKMAEAIADALSELDPANKDYYEKNAEKYLKELDELDA 139 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHH
Confidence 57788899999999999999986 5566666666666666655
No 43
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=26.74 E-value=84 Score=21.37 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 047968 38 DFLRKKFDSLKYDLKRVEEVY 58 (81)
Q Consensus 38 ~~LrkK~d~lKyslkKvE~v~ 58 (81)
+.++.+|+.+...|.+||.-+
T Consensus 87 ~~~~~~~~~~e~Rl~~mE~yV 107 (121)
T TIGR02978 87 REVKREFRDLERRLRNMERYV 107 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 567888888888888888754
No 44
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=26.65 E-value=2.6e+02 Score=20.79 Aligned_cols=40 Identities=18% Similarity=0.343 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHhcccCC-hHHHHHHHHHHHHHHHH
Q 047968 15 CPRKVLRFLTDLHAAFRMLNLRN-DFLRKKFDSLKYDLKRV 54 (81)
Q Consensus 15 ~p~~i~~fvr~l~~gF~~Lnlkn-~~LrkK~d~lKyslkKv 54 (81)
.|.....+++.|...+..+++.| +..++.+..+...|+.+
T Consensus 122 dp~~~~~~a~~Ia~~L~~~dP~~~~~y~~N~~~~~~~L~~l 162 (287)
T cd01137 122 SPKNAIIYVKNIAKALSEADPANAETYQKNAAAYKAKLKAL 162 (287)
T ss_pred CHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHH
Confidence 57888899999999999999986 44555555555554433
No 45
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=26.30 E-value=2.2e+02 Score=19.48 Aligned_cols=44 Identities=20% Similarity=0.353 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHhcc--cCChHHHHHHHHHHHHHHHHHhhhhee
Q 047968 18 KVLRFLTDLHAAFRMLN--LRNDFLRKKFDSLKYDLKRVEEVYYDM 61 (81)
Q Consensus 18 ~i~~fvr~l~~gF~~Ln--lkn~~LrkK~d~lKyslkKvE~v~YdL 61 (81)
.+-.-++.+.+.+..|. +.+.+|+..+..|+..++.+|.-+=.|
T Consensus 90 ~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 90 ELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667777777774 457899999999999999998864333
No 46
>PF00586 AIRS: AIR synthase related protein, N-terminal domain; InterPro: IPR000728 This family includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; GO: 0003824 catalytic activity; PDB: 3VIU_A 2Z1T_A 2Z1U_A 3C9U_B 3C9S_A 3C9R_A 1VQV_A 3C9T_B 3M84_A 3QTY_A ....
Probab=25.86 E-value=1.2e+02 Score=18.47 Aligned_cols=33 Identities=12% Similarity=0.224 Sum_probs=26.1
Q ss_pred ceeeeecccCCchhHHHHHHHHHHHHHHHHhcc
Q 047968 2 RYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLN 34 (81)
Q Consensus 2 R~aiN~vt~Gd~~~p~~i~~fvr~l~~gF~~Ln 34 (81)
++.++++..++...+..+.++++.+.+.-..++
T Consensus 56 ~~~~~~l~~~~~~~~~~l~~~~~Gi~~~~~~~g 88 (96)
T PF00586_consen 56 LAILDSLGLPNPESPEELKEIVKGIAEACREFG 88 (96)
T ss_dssp EEEEEEEEESTTSBHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 567888888888888888888888887766554
No 47
>smart00037 CNX Connexin homologues. Connexin channels participate in the regulation of signaling between developing and differentiated cell types.
Probab=25.74 E-value=19 Score=20.00 Aligned_cols=9 Identities=44% Similarity=0.685 Sum_probs=6.3
Q ss_pred HHhhhheeE
Q 047968 54 VEEVYYDMK 62 (81)
Q Consensus 54 vE~v~YdL~ 62 (81)
.|+||||-.
T Consensus 19 C~nvCyD~~ 27 (34)
T smart00037 19 CENVCYDQA 27 (34)
T ss_pred ccceecccc
Confidence 378899853
No 48
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=24.37 E-value=2e+02 Score=21.09 Aligned_cols=54 Identities=22% Similarity=0.419 Sum_probs=45.0
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhhhheeE
Q 047968 9 LAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDMK 62 (81)
Q Consensus 9 t~Gd~~~p~~i~~fvr~l~~gF~~Lnlkn~~LrkK~d~lKyslkKvE~v~YdL~ 62 (81)
..|-+..|..+..=+.++...|..+....+.-+.+++.+...+..++.-...|.
T Consensus 12 ~t~~~~~~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~ 65 (264)
T PF06008_consen 12 LTGAWPAPYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQ 65 (264)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788999999999999999999988887888889988888888877665553
No 49
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=24.32 E-value=86 Score=19.73 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=16.2
Q ss_pred HHHHhcccC-ChHHHHHHHHHHHH
Q 047968 28 AAFRMLNLR-NDFLRKKFDSLKYD 50 (81)
Q Consensus 28 ~gF~~Lnlk-n~~LrkK~d~lKys 50 (81)
+-+.+.-+. |..+|++.+++||-
T Consensus 10 ai~lLI~l~~ns~lr~eiealkY~ 33 (66)
T PF07438_consen 10 AIALLISLSVNSELRKEIEALKYM 33 (66)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444443 68899999999984
No 50
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=24.11 E-value=1.1e+02 Score=20.55 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=11.8
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHHHHHH
Q 047968 26 LHAAFRMLNLRNDFLRKKFDSLKYDLKRV 54 (81)
Q Consensus 26 l~~gF~~Lnlkn~~LrkK~d~lKyslkKv 54 (81)
|++.|..|.-.-..|-+.+..||..+..+
T Consensus 6 lfd~l~~le~~l~~l~~el~~LK~~~~el 34 (110)
T PRK13169 6 IFDALDDLEQNLGVLLKELGALKKQLAEL 34 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444433333333444444444444433
No 51
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=23.99 E-value=2.7e+02 Score=21.07 Aligned_cols=41 Identities=12% Similarity=0.171 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHhcccCC-hHHHHHHHHHHHHHHHHH
Q 047968 15 CPRKVLRFLTDLHAAFRMLNLRN-DFLRKKFDSLKYDLKRVE 55 (81)
Q Consensus 15 ~p~~i~~fvr~l~~gF~~Lnlkn-~~LrkK~d~lKyslkKvE 55 (81)
.|......++.|...|..+++.| +..++.++.....|+.++
T Consensus 150 dp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~ 191 (311)
T PRK09545 150 SPEIARATAVAIHDKLVELMPQSKAKLDANLKDFEAQLAQTD 191 (311)
T ss_pred CHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHH
Confidence 47788899999999999999986 445555555555554443
No 52
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=23.78 E-value=1.1e+02 Score=20.97 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 047968 38 DFLRKKFDSLKYDLKRVEEVY 58 (81)
Q Consensus 38 ~~LrkK~d~lKyslkKvE~v~ 58 (81)
+.++.+|+.+...|+++|.-+
T Consensus 84 ~~~~~~~~~~e~Rlr~mE~yV 104 (118)
T PRK10697 84 DEVDRELAAGEQRLREMERYV 104 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 457778888888888888754
No 53
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=23.41 E-value=2e+02 Score=24.34 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhhhheeE
Q 047968 14 DCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDMK 62 (81)
Q Consensus 14 ~~p~~i~~fvr~l~~gF~~Lnlkn~~LrkK~d~lKyslkKvE~v~YdL~ 62 (81)
+.-..+.+...++|+-.+.++-+-+.|.+++++|+..|+.+-+.+=++.
T Consensus 420 nsl~d~aK~~~~myd~~~~l~~~q~~le~qI~~Le~kl~~l~~~l~s~~ 468 (489)
T KOG3684|consen 420 NSLVDLAKTQNDMYDLLQELHSRQEELEKQIDTLESKLEALTASLSSLP 468 (489)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3445677888899999999999999999999999999999988765544
No 54
>COG2508 Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.19 E-value=61 Score=25.28 Aligned_cols=19 Identities=37% Similarity=0.606 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 047968 40 LRKKFDSLKYDLKRVEEVY 58 (81)
Q Consensus 40 LrkK~d~lKyslkKvE~v~ 58 (81)
|==.=+||+|-++|+|+.+
T Consensus 376 L~iHRNTL~YRi~kieElt 394 (421)
T COG2508 376 LFVHRNTLRYRLKKIEELT 394 (421)
T ss_pred hcccHHHHHHHHHHHHHHh
Confidence 3334479999999999974
No 55
>PF07710 P53_tetramer: P53 tetramerisation motif; InterPro: IPR010991 The p53 protein is a tetrameric transcription factor that plays a central role in the prevention of neoplastic transformation []. Oligomerization appears to be essential for the tumour suppressing activity of p53. p53 can be divided into different functional domains: an N-terminal transactivation domain, a proline-rich domain, a DNA-binding domain (IPR008967 from INTERPRO), a tetramerisation domain and a C-terminal regulatory region. The tetramerisation domain of human p53 extends from residues 325 to 356, and has a 4-helical bundle fold. The tetramerisation domain is essential for DNA binding, protein-protein interactions, post-translational modifications, and p53 degradation [].; GO: 0051262 protein tetramerization; PDB: 3Q06_B 1SAL_B 1OLH_B 1AIE_A 1PES_D 1SAK_D 1SAE_B 2J11_D 1PET_A 1OLG_A ....
Probab=23.17 E-value=39 Score=19.36 Aligned_cols=14 Identities=14% Similarity=0.411 Sum_probs=11.3
Q ss_pred HhhhheeEeecccC
Q 047968 55 EEVYYDMKIRHLAN 68 (81)
Q Consensus 55 E~v~YdL~lRg~~~ 68 (81)
++=+|+|+|||-+.
T Consensus 7 D~E~ftL~VrGRe~ 20 (42)
T PF07710_consen 7 DEEVFTLQVRGRER 20 (42)
T ss_dssp CCCEEEEEEESHHH
T ss_pred CCCEEEEEEecHHH
Confidence 55689999999764
No 56
>PF14129 DUF4296: Domain of unknown function (DUF4296)
Probab=23.12 E-value=22 Score=22.18 Aligned_cols=15 Identities=20% Similarity=0.700 Sum_probs=10.7
Q ss_pred HHHHhhhheeEeecc
Q 047968 52 KRVEEVYYDMKIRHL 66 (81)
Q Consensus 52 kKvE~v~YdL~lRg~ 66 (81)
.|+|+++||++|-.+
T Consensus 8 ~kM~~IL~D~~l~~a 22 (87)
T PF14129_consen 8 DKMEDILYDLHLAEA 22 (87)
T ss_pred HHHHHHHHHHHHHHH
Confidence 578888888876443
No 57
>PF06526 DUF1107: Protein of unknown function (DUF1107); InterPro: IPR009491 This family consists of several short, hypothetical bacterial proteins of unknown function.; PDB: 2JRO_A.
Probab=23.07 E-value=38 Score=21.06 Aligned_cols=15 Identities=20% Similarity=0.600 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHH
Q 047968 15 CPRKVLRFLTDLHAA 29 (81)
Q Consensus 15 ~p~~i~~fvr~l~~g 29 (81)
.|.+|+.||+.++.|
T Consensus 8 ~P~~IAk~Vk~lF~G 22 (64)
T PF06526_consen 8 RPRQIAKYVKTLFRG 22 (64)
T ss_dssp -HHHHHHHHHHH-SE
T ss_pred CHHHHHHHHHHHccc
Confidence 499999999999866
No 58
>COG5051 RPL36A Ribosomal protein L36E [Translation, ribosomal structure and biogenesis]
Probab=22.61 E-value=93 Score=20.83 Aligned_cols=20 Identities=35% Similarity=0.532 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q 047968 38 DFLRKKFDSLKYDLKRVEEV 57 (81)
Q Consensus 38 ~~LrkK~d~lKyslkKvE~v 57 (81)
.-++|++.++|....|||+.
T Consensus 71 KlakKRLGs~kRAkaKvEel 90 (97)
T COG5051 71 KLAKKRLGSLKRAKAKVEEL 90 (97)
T ss_pred HHHHHHhhhHHHHHHHHHHH
Confidence 56889999999999999985
No 59
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.34 E-value=3.2e+02 Score=20.26 Aligned_cols=41 Identities=10% Similarity=0.228 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHHhcccCC-hHHHHHHHHHHHHHHHHH
Q 047968 15 CPRKVLRFLTDLHAAFRMLNLRN-DFLRKKFDSLKYDLKRVE 55 (81)
Q Consensus 15 ~p~~i~~fvr~l~~gF~~Lnlkn-~~LrkK~d~lKyslkKvE 55 (81)
.|.....+++.|...|..+++.+ +..++.+..+...|+.+.
T Consensus 126 dp~n~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~ 167 (286)
T cd01019 126 SPENAAEVAQAVAEKLSALDPDNAATYAANLEAFNARLAELD 167 (286)
T ss_pred CHHHHHHHHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHH
Confidence 47888899999999999999976 444444544444444443
No 60
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=22.27 E-value=1.3e+02 Score=19.93 Aligned_cols=9 Identities=33% Similarity=0.597 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 047968 43 KFDSLKYDL 51 (81)
Q Consensus 43 K~d~lKysl 51 (81)
.+..||..+
T Consensus 23 ~~~~LK~~~ 31 (107)
T PF06156_consen 23 ELEELKKQL 31 (107)
T ss_pred HHHHHHHHH
Confidence 333333333
No 61
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=22.04 E-value=2.6e+02 Score=20.89 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=19.5
Q ss_pred CChHHHHHHHHHHHHHHHHHhhh
Q 047968 36 RNDFLRKKFDSLKYDLKRVEEVY 58 (81)
Q Consensus 36 kn~~LrkK~d~lKyslkKvE~v~ 58 (81)
.++.+.+....||++|+.+|+-+
T Consensus 108 q~~~~~~~v~~~~q~~~~l~~K~ 130 (189)
T TIGR02132 108 QAPALKKDVTKLKQDIKSLDKKL 130 (189)
T ss_pred hCchHHhHHHHHHHHHHHHHHHH
Confidence 36788999999999999998754
No 62
>PLN02751 glutamyl-tRNA(Gln) amidotransferase
Probab=21.62 E-value=1.2e+02 Score=25.67 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=28.5
Q ss_pred eeecccCCchhHHHHHHHHHHHHHHHHhcccCC
Q 047968 5 VNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRN 37 (81)
Q Consensus 5 iN~vt~Gd~~~p~~i~~fvr~l~~gF~~Lnlkn 37 (81)
|-.||.-|+..|.+...|++.|..-++.++...
T Consensus 217 IEIVTePdi~speEA~a~l~~L~~ilr~lgisd 249 (544)
T PLN02751 217 LEIVSEPDMRTGIEAAEYGAELQRLVRYLGVSN 249 (544)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHHHHHhCccc
Confidence 345889999999999999999999999995543
No 63
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=21.41 E-value=1.3e+02 Score=27.59 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhheeEeeccc
Q 047968 38 DFLRKKFDSLKYDLKRVEEVYYDMKIRHLA 67 (81)
Q Consensus 38 ~~LrkK~d~lKyslkKvE~v~YdL~lRg~~ 67 (81)
++++|-++.|+.+++++|.-+....+-+.+
T Consensus 897 d~ikK~~~~m~~~ik~Le~dlk~~~~~~~e 926 (1102)
T KOG1924|consen 897 DEIKKNLQQMENQIKKLERDLKNFKIAGNE 926 (1102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 899999999999999999988777766644
No 64
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional
Probab=21.30 E-value=33 Score=26.61 Aligned_cols=10 Identities=30% Similarity=0.228 Sum_probs=6.8
Q ss_pred ceeeeecccC
Q 047968 2 RYVVNQVLAG 11 (81)
Q Consensus 2 R~aiN~vt~G 11 (81)
|||||+++.-
T Consensus 107 RyCiNs~sL~ 116 (283)
T PRK05550 107 RHCVNSASLD 116 (283)
T ss_pred cccccccccc
Confidence 7777777653
No 65
>PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species. The region in question is approximately 150 amino acid residues long.
Probab=21.30 E-value=82 Score=22.79 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=17.1
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhheeE
Q 047968 37 NDFLRKKFDSLKYDLKRVEEVYYDMK 62 (81)
Q Consensus 37 n~~LrkK~d~lKyslkKvE~v~YdL~ 62 (81)
|.+||| -|..|+|.|.+|=.|+
T Consensus 122 ~rElRR----ak~kvqkwErvcaAlR 143 (155)
T PF07789_consen 122 NRELRR----AKSKVQKWERVCAALR 143 (155)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHH
Confidence 556665 7899999999997654
No 66
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=20.70 E-value=1.7e+02 Score=21.19 Aligned_cols=42 Identities=21% Similarity=0.346 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhhhhee
Q 047968 20 LRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDM 61 (81)
Q Consensus 20 ~~fvr~l~~gF~~Lnlkn~~LrkK~d~lKyslkKvE~v~YdL 61 (81)
..|...|+.-.+..+++|-.|-+|+..|.-.|.+-|--+.++
T Consensus 128 ~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~ev 169 (201)
T PF13851_consen 128 RKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEV 169 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999999999999999999999999887665544
No 67
>cd00126 PAH Pancreatic Hormone domain, a regulator of pancreatic and gastrointestinal functions; neuropeptide Y (NPY)b, peptide YY (PYY), and pancreatic polypetide (PP) are closely related; propeptide is enzymatically cleaved to yield the mature active peptide with amidated C-terminal ends; receptor binding and activation functions may reside in the N- and C-termini respectively; occurs in neurons, intestinal endocrine cells, and pancreas; exist as monomers and dimers
Probab=20.64 E-value=1.7e+02 Score=16.19 Aligned_cols=24 Identities=17% Similarity=0.488 Sum_probs=19.0
Q ss_pred cCCchhHHHHHHHHHHHHHHHHhc
Q 047968 10 AGNYDCPRKVLRFLTDLHAAFRML 33 (81)
Q Consensus 10 ~Gd~~~p~~i~~fvr~l~~gF~~L 33 (81)
=||.+.|.++.++.++|..=+.++
T Consensus 8 Pg~~a~~eel~~Y~~~L~~Yinli 31 (36)
T cd00126 8 PGDDASPEELRQYLAALREYINLI 31 (36)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Confidence 488999999999999987655443
No 68
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.14 E-value=3.5e+02 Score=19.66 Aligned_cols=40 Identities=18% Similarity=0.339 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHhcccCC-hHHHHHHHHHHHHHHHH
Q 047968 15 CPRKVLRFLTDLHAAFRMLNLRN-DFLRKKFDSLKYDLKRV 54 (81)
Q Consensus 15 ~p~~i~~fvr~l~~gF~~Lnlkn-~~LrkK~d~lKyslkKv 54 (81)
.|.....+++.|...+..+++.| +..++.+..+...|+.+
T Consensus 117 dp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l 157 (266)
T cd01018 117 SPANAKIMAENIYEALAELDPQNATYYQANLDALLAELDAL 157 (266)
T ss_pred CHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHH
Confidence 68888999999999999999986 34455555544444444
Done!