Query 047968
Match_columns 81
No_of_seqs 101 out of 154
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 08:17:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047968.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047968hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1j1j_A Translin; testis/brain 99.9 1.6E-29 5.6E-34 185.6 1.7 73 1-73 164-236 (240)
2 3axj_A GM27569P, translin; tra 99.9 2.2E-28 7.4E-33 180.6 3.2 74 1-74 167-240 (249)
3 3qb5_K Translin-associated pro 99.9 3.8E-28 1.3E-32 182.5 3.1 70 1-70 199-269 (290)
4 3axj_B TRAX, translin associat 99.9 3.2E-28 1.1E-32 183.6 2.1 69 1-69 210-279 (298)
5 3g80_A Protein B2; RNA-binding 84.2 4.3 0.00015 26.2 6.3 48 14-61 32-79 (97)
6 2wuj_A Septum site-determining 68.8 3 0.0001 23.9 2.1 35 16-50 22-56 (57)
7 2l1u_A MSRB2, methionine-R-sul 53.0 3.5 0.00012 28.2 0.4 10 1-10 116-125 (143)
8 2wt7_A Proto-oncogene protein 50.3 23 0.00078 20.3 3.7 38 21-58 23-60 (63)
9 2kao_A Methionine-R-sulfoxide 49.9 3.8 0.00013 27.5 0.2 10 1-10 92-101 (124)
10 3e0o_A Peptide methionine sulf 49.0 4.4 0.00015 27.8 0.4 11 1-11 113-123 (144)
11 3hcg_A Peptide methionine sulf 49.0 4.4 0.00015 27.8 0.4 11 1-11 116-126 (146)
12 2kv1_A Methionine-R-sulfoxide 48.5 3.9 0.00013 27.4 0.1 10 1-10 92-101 (124)
13 2az0_A B2 protein; protein-RNA 48.3 20 0.00069 22.0 3.3 43 15-61 11-55 (73)
14 3ra3_A P1C; coiled coil domain 46.8 9.3 0.00032 19.4 1.4 22 33-54 5-26 (28)
15 3hcj_A MSRB, peptide methionin 46.3 5.1 0.00017 27.8 0.4 10 1-10 122-131 (154)
16 1txp_A HnRNP C, heterogeneous 43.4 13 0.00043 19.1 1.6 18 39-56 10-27 (28)
17 3p8c_D Wiskott-aldrich syndrom 39.3 25 0.00086 26.2 3.3 50 17-66 46-95 (279)
18 1t2k_D Cyclic-AMP-dependent tr 37.4 48 0.0017 18.6 3.7 38 21-58 22-59 (61)
19 2pnv_A Small conductance calci 35.7 30 0.001 19.1 2.5 30 19-55 7-36 (43)
20 3t98_B Nucleoporin NUP58/NUP45 30.5 79 0.0027 19.7 4.1 45 10-54 40-84 (93)
21 3oa7_A Head morphogenesis prot 29.4 77 0.0026 22.9 4.4 40 18-57 34-73 (206)
22 3azd_A Short alpha-tropomyosin 27.7 24 0.00081 18.6 1.1 20 37-56 6-25 (37)
23 3e0m_A Peptide methionine sulf 27.7 15 0.00052 27.9 0.4 11 1-11 282-292 (313)
24 2prs_A High-affinity zinc upta 27.4 1.5E+02 0.005 20.8 5.6 41 15-55 121-162 (284)
25 3cx3_A Lipoprotein; zinc-bindi 26.9 1.5E+02 0.0051 20.8 5.6 42 15-56 124-166 (284)
26 1pq4_A Periplasmic binding pro 26.4 1.5E+02 0.0052 20.9 5.6 42 15-56 137-179 (291)
27 2o1e_A YCDH; alpha-beta protei 26.2 1.5E+02 0.0052 21.3 5.6 42 15-56 137-179 (312)
28 1nkp_B MAX protein, MYC proto- 25.3 54 0.0019 19.3 2.6 38 17-54 43-80 (83)
29 1olg_A Tumor suppressor P53 (o 24.3 7.4 0.00025 21.7 -1.4 15 54-68 5-19 (42)
30 2yy0_A C-MYC-binding protein; 24.2 65 0.0022 18.1 2.6 20 36-55 27-46 (53)
31 1a92_A Delta antigen; leucine 24.0 81 0.0028 18.0 3.0 19 38-56 17-35 (50)
32 1hjb_A Ccaat/enhancer binding 24.0 80 0.0027 19.5 3.2 36 26-61 41-76 (87)
33 1ci6_A Transcription factor AT 24.0 83 0.0028 17.9 3.1 36 23-58 25-60 (63)
34 1toa_A Tromp-1, protein (perip 23.7 1.8E+02 0.0061 20.9 5.6 40 15-54 142-182 (313)
35 3sja_C Golgi to ER traffic pro 23.4 60 0.0021 19.3 2.5 19 38-56 35-53 (65)
36 3tq2_A KE1; parallel three hel 23.2 35 0.0012 18.1 1.2 29 20-48 7-35 (36)
37 2k0n_A Mediator of RNA polymer 22.3 1.5E+02 0.0052 18.5 4.7 49 5-53 26-78 (85)
38 1xvl_A Mn transporter, MNTC pr 22.2 2E+02 0.0068 20.8 5.6 39 15-53 149-188 (321)
39 3gi1_A LBP, laminin-binding pr 22.1 2.1E+02 0.007 20.2 5.6 41 15-55 126-167 (286)
40 3ujp_A Mn transporter subunit; 21.4 2.1E+02 0.0072 20.6 5.6 40 15-54 135-175 (307)
41 1jnm_A Proto-oncogene C-JUN; B 21.2 64 0.0022 18.1 2.2 38 20-57 21-58 (62)
42 3ci9_A Heat shock factor-bindi 21.1 44 0.0015 18.7 1.4 36 16-51 4-47 (48)
43 1c1g_A Tropomyosin; contractIl 20.7 84 0.0029 20.1 3.0 18 38-55 2-19 (284)
44 3mfq_A TROA, high-affinity zin 20.2 2.2E+02 0.0074 20.1 5.4 40 15-54 108-148 (282)
45 3zy0_A Tumor protein P63; tran 20.1 23 0.0008 18.5 0.1 12 57-68 4-15 (32)
No 1
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Probab=99.95 E-value=1.6e-29 Score=185.61 Aligned_cols=73 Identities=48% Similarity=0.842 Sum_probs=65.4
Q ss_pred CceeeeecccCCchhHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhhhheeEeecccCCCCCC
Q 047968 1 PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDMKIRHLANGDSAE 73 (81)
Q Consensus 1 ~R~aiN~vt~Gd~~~p~~i~~fvr~l~~gF~~Lnlkn~~LrkK~d~lKyslkKvE~v~YdL~lRg~~~~~~~~ 73 (81)
+|||||+|+.||+++|++|++||++||++|+.||++|++||||+|+|||+|+|||+|||+|+|||++|.++.+
T Consensus 164 ~R~avn~v~~Gd~~~~~~i~~fm~~Ly~~f~~Lnl~n~~LRkK~D~lk~~vkKvE~v~Ydl~vRg~~~~~~~~ 236 (240)
T 1j1j_A 164 SRLSVNSVTAGDYSRPLHISTFINELDSGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDLSIRGFNKETAAA 236 (240)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHTTHHHHHHHHHHHHHHHHTTTC-------
T ss_pred HHHHHHHHhcCChHhHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHheecCCCCCCCCC
Confidence 5999999999999999999999999999999999999999999999999999999999999999998865443
No 2
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=99.94 E-value=2.2e-28 Score=180.63 Aligned_cols=74 Identities=46% Similarity=0.862 Sum_probs=67.7
Q ss_pred CceeeeecccCCchhHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhhhheeEeecccCCCCCCC
Q 047968 1 PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDMKIRHLANGDSAED 74 (81)
Q Consensus 1 ~R~aiN~vt~Gd~~~p~~i~~fvr~l~~gF~~Lnlkn~~LrkK~d~lKyslkKvE~v~YdL~lRg~~~~~~~~~ 74 (81)
+|||||+|+.||++.|++||+||++||++|+.||++|++||||+|+|||+|+|||+|||+|+|||+.|.+.+.+
T Consensus 167 ~R~ain~v~~Gd~~~~~~i~~fm~~Ly~~f~~Ln~~n~~LRkK~D~lk~sv~KvE~v~Ydl~vRg~~~~~~~~~ 240 (249)
T 3axj_A 167 SRFATNSVTMGDYERPLNISHFIGDLNTGFRLLNLKNDGLRKRFDALKYDVKKIEEVVYDVSIRGLSSKEKDQQ 240 (249)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC-----
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccC
Confidence 59999999999999999999999999999999999999999999999999999999999999999987765443
No 3
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Probab=99.94 E-value=3.8e-28 Score=182.53 Aligned_cols=70 Identities=29% Similarity=0.414 Sum_probs=67.1
Q ss_pred CceeeeecccCCchhHHHHHHHHHHHHHHHHhcccCCh-HHHHHHHHHHHHHHHHHhhhheeEeecccCCC
Q 047968 1 PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRND-FLRKKFDSLKYDLKRVEEVYYDMKIRHLANGD 70 (81)
Q Consensus 1 ~R~aiN~vt~Gd~~~p~~i~~fvr~l~~gF~~Lnlkn~-~LrkK~d~lKyslkKvE~v~YdL~lRg~~~~~ 70 (81)
+|||||+|+.||+++|++||+||++||++|+.||++|+ +||||+|+|||||+|||+|||+|+|||+|..+
T Consensus 199 mR~ainsv~~Gd~~~~~~i~~fm~~Ly~gf~~L~~~~~~~LrKK~d~lk~svkKvE~v~Ydl~vRg~e~pk 269 (290)
T 3qb5_K 199 MRMCINSVGNGDIDTPFEVSQFLRQVYDGFSFIGNTGPYEVSKKLYTLKQSLAKVENACYALKVRGSEIPK 269 (290)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhhheeeecCCCCc
Confidence 59999999999999999999999999999999999997 99999999999999999999999999997543
No 4
>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C
Probab=99.94 E-value=3.2e-28 Score=183.61 Aligned_cols=69 Identities=22% Similarity=0.314 Sum_probs=67.1
Q ss_pred CceeeeecccCCchhHHHHHHHHHHHHHHHHhcccCC-hHHHHHHHHHHHHHHHHHhhhheeEeecccCC
Q 047968 1 PRYVVNQVLAGNYDCPRKVLRFLTDLHAAFRMLNLRN-DFLRKKFDSLKYDLKRVEEVYYDMKIRHLANG 69 (81)
Q Consensus 1 ~R~aiN~vt~Gd~~~p~~i~~fvr~l~~gF~~Lnlkn-~~LrkK~d~lKyslkKvE~v~YdL~lRg~~~~ 69 (81)
+|||||+|+.||+++|++||.||++||++|+.||++| ++||||+|+|||||+|||+|||+|+|||++..
T Consensus 210 mR~ainsv~~Gd~~~~~~i~~fm~~Ly~gf~~Lnlkn~~~LRKK~D~lk~svkKvE~v~Ydl~vRg~e~~ 279 (298)
T 3axj_B 210 MRRCINSLGSGDTDTCLDTCKALQHFYSGYISLNCQRARELWRKITTMKQSVLKAENVCYNVKVRGGEAA 279 (298)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHhccchHhHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHheecCCCcc
Confidence 5999999999999999999999999999999999999 99999999999999999999999999999853
No 5
>3g80_A Protein B2; RNA-binding, viral protein, suppressor of RNAI, RNA interference; 2.50A {Nodamura virus}
Probab=84.19 E-value=4.3 Score=26.24 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhhhhee
Q 047968 14 DCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDM 61 (81)
Q Consensus 14 ~~p~~i~~fvr~l~~gF~~Lnlkn~~LrkK~d~lKyslkKvE~v~YdL 61 (81)
+.|-.|.+........-..|-...+..+|-+|.++--|.|.|..||..
T Consensus 32 ~lP~~l~qv~q~~v~ai~sl~~qDpnV~kDLdn~~acL~k~~~t~~ra 79 (97)
T 3g80_A 32 SLPAKLEQLAQETQATIQTLMIADPNVNKDLRAFCEFLTVQHQRAYRA 79 (97)
T ss_dssp THHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888888777889999999999999999999964
No 6
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=68.83 E-value=3 Score=23.91 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHH
Q 047968 16 PRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYD 50 (81)
Q Consensus 16 p~~i~~fvr~l~~gF~~Lnlkn~~LrkK~d~lKys 50 (81)
|-.+-+|+..|-..+..|.-.|..|+.+...++..
T Consensus 22 ~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 22 EDEVNEFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56788999999999999888888888888777654
No 7
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=52.97 E-value=3.5 Score=28.24 Aligned_cols=10 Identities=30% Similarity=0.590 Sum_probs=8.5
Q ss_pred Cceeeeeccc
Q 047968 1 PRYVVNQVLA 10 (81)
Q Consensus 1 ~R~aiN~vt~ 10 (81)
.|||||+++.
T Consensus 116 ~RyCINS~sL 125 (143)
T 2l1u_A 116 QRFCINSVAL 125 (143)
T ss_dssp CEEEECCTTE
T ss_pred CEEEeeeeEE
Confidence 3999999975
No 8
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=50.26 E-value=23 Score=20.28 Aligned_cols=38 Identities=16% Similarity=0.202 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhhh
Q 047968 21 RFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVY 58 (81)
Q Consensus 21 ~fvr~l~~gF~~Lnlkn~~LrkK~d~lKyslkKvE~v~ 58 (81)
+.+.++......|.-.|..|+..+..|+..+..+..++
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888889999999999999999888764
No 9
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=49.88 E-value=3.8 Score=27.49 Aligned_cols=10 Identities=10% Similarity=0.205 Sum_probs=8.4
Q ss_pred Cceeeeeccc
Q 047968 1 PRYVVNQVLA 10 (81)
Q Consensus 1 ~R~aiN~vt~ 10 (81)
.|||||+++.
T Consensus 92 ~RyCINS~sL 101 (124)
T 2kao_A 92 SRFCIFSSSL 101 (124)
T ss_dssp CCEECCSSSE
T ss_pred CEeeeCeEEE
Confidence 3999999975
No 10
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=48.99 E-value=4.4 Score=27.80 Aligned_cols=11 Identities=27% Similarity=0.425 Sum_probs=9.1
Q ss_pred CceeeeecccC
Q 047968 1 PRYVVNQVLAG 11 (81)
Q Consensus 1 ~R~aiN~vt~G 11 (81)
-|||||+++.-
T Consensus 113 ~RyCiNS~sL~ 123 (144)
T 3e0o_A 113 LRYCINSAALR 123 (144)
T ss_dssp CEEEECGGGEE
T ss_pred CEeeeceeeEe
Confidence 39999999864
No 11
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=48.97 E-value=4.4 Score=27.84 Aligned_cols=11 Identities=27% Similarity=0.359 Sum_probs=9.2
Q ss_pred CceeeeecccC
Q 047968 1 PRYVVNQVLAG 11 (81)
Q Consensus 1 ~R~aiN~vt~G 11 (81)
.|||||+++.-
T Consensus 116 ~RyCiNS~sL~ 126 (146)
T 3hcg_A 116 LRYCINGASLK 126 (146)
T ss_dssp CEEEECGGGEE
T ss_pred CEEeeeeEEEE
Confidence 39999999865
No 12
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=48.55 E-value=3.9 Score=27.42 Aligned_cols=10 Identities=10% Similarity=0.205 Sum_probs=8.3
Q ss_pred Cceeeeeccc
Q 047968 1 PRYVVNQVLA 10 (81)
Q Consensus 1 ~R~aiN~vt~ 10 (81)
.|||||+++.
T Consensus 92 ~RyCINS~sL 101 (124)
T 2kv1_A 92 SRFCIFSSSL 101 (124)
T ss_dssp SCEECCTTTE
T ss_pred CEEeecceee
Confidence 3999999975
No 13
>2az0_A B2 protein; protein-RNA complex, four-helix bundle, viral protein/RNA complex; HET: 5BU; 2.60A {Flock house virus} SCOP: a.30.8.1 PDB: 2az2_A* 2b9z_A
Probab=48.31 E-value=20 Score=22.02 Aligned_cols=43 Identities=14% Similarity=0.233 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHhcccC--ChHHHHHHHHHHHHHHHHHhhhhee
Q 047968 15 CPRKVLRFLTDLHAAFRMLNLR--NDFLRKKFDSLKYDLKRVEEVYYDM 61 (81)
Q Consensus 15 ~p~~i~~fvr~l~~gF~~Lnlk--n~~LrkK~d~lKyslkKvE~v~YdL 61 (81)
.|-.|.+.+..+. .+.+. ....+|-+|.++--|.|.|..||..
T Consensus 11 lP~~l~q~~q~v~----~~t~qda~pnV~kDLdn~~acL~k~~~t~~ra 55 (73)
T 2az0_A 11 LPDRIQTAVEAAM----GMSYQDAPNNVRRDLDNLHACLNKAKLTVSRM 55 (73)
T ss_dssp HHHHHHHHHHTGG----GSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHhccCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555655555554 33443 3689999999999999999999864
No 14
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=46.84 E-value=9.3 Score=19.38 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=16.7
Q ss_pred cccCChHHHHHHHHHHHHHHHH
Q 047968 33 LNLRNDFLRKKFDSLKYDLKRV 54 (81)
Q Consensus 33 Lnlkn~~LrkK~d~lKyslkKv 54 (81)
|.+.||.|..|+-.|||.+.-+
T Consensus 5 lefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHh
Confidence 4456889999999999876543
No 15
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=46.35 E-value=5.1 Score=27.78 Aligned_cols=10 Identities=30% Similarity=0.265 Sum_probs=8.4
Q ss_pred Cceeeeeccc
Q 047968 1 PRYVVNQVLA 10 (81)
Q Consensus 1 ~R~aiN~vt~ 10 (81)
-|||||+++.
T Consensus 122 ~RyCiNS~sL 131 (154)
T 3hcj_A 122 ERHCLNSVSL 131 (154)
T ss_dssp CEEEECGGGE
T ss_pred CEeeeceeeE
Confidence 3999999985
No 16
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=43.37 E-value=13 Score=19.12 Aligned_cols=18 Identities=33% Similarity=0.589 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 047968 39 FLRKKFDSLKYDLKRVEE 56 (81)
Q Consensus 39 ~LrkK~d~lKyslkKvE~ 56 (81)
.++.|+|+|-.+|.|+|.
T Consensus 10 QIK~kvDsLLe~Le~~~~ 27 (28)
T 1txp_A 10 QIKQKVDSLLENLEKIEK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 467789999999998874
No 17
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=39.33 E-value=25 Score=26.19 Aligned_cols=50 Identities=10% Similarity=0.271 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhhhheeEeecc
Q 047968 17 RKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDMKIRHL 66 (81)
Q Consensus 17 ~~i~~fvr~l~~gF~~Lnlkn~~LrkK~d~lKyslkKvE~v~YdL~lRg~ 66 (81)
...+++..+|+..+..+.-+...|..|++.|...|..+|.-.-++++...
T Consensus 46 ~~A~dIF~eL~~e~~~~~~R~~~L~~RI~~L~~~v~~ld~~~eevSLq~~ 95 (279)
T 3p8c_D 46 KYAEDIFGELFNEAHSFSFRVNSLQERVDRLSVSVTQLDPKEEELSLQDI 95 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCCCTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhh
Confidence 44556777777777777777777888888888888755544444555443
No 18
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=37.45 E-value=48 Score=18.57 Aligned_cols=38 Identities=13% Similarity=0.236 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhhh
Q 047968 21 RFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVY 58 (81)
Q Consensus 21 ~fvr~l~~gF~~Lnlkn~~LrkK~d~lKyslkKvE~v~ 58 (81)
..+.++......|.-.|..|+..+..|+..+..+...+
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777778888888889999999999999988887654
No 19
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=35.69 E-value=30 Score=19.06 Aligned_cols=30 Identities=17% Similarity=0.350 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHH
Q 047968 19 VLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVE 55 (81)
Q Consensus 19 i~~fvr~l~~gF~~Lnlkn~~LrkK~d~lKyslkKvE 55 (81)
.++.|.++++- .+.|-+|+++|.+.|.-+.
T Consensus 7 mydlvsel~~r-------~e~LE~Ri~~LE~KLd~L~ 36 (43)
T 2pnv_A 7 MYDMISDLNER-------SEDFEKRIVTLETKLETLI 36 (43)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHH
Confidence 45566666554 5566666666665554443
No 20
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=30.46 E-value=79 Score=19.68 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=33.4
Q ss_pred cCCchhHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHH
Q 047968 10 AGNYDCPRKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRV 54 (81)
Q Consensus 10 ~Gd~~~p~~i~~fvr~l~~gF~~Lnlkn~~LrkK~d~lKyslkKv 54 (81)
.+..-+|..|..-++.+|..|..|=-+-..|=..++.+|..-.+.
T Consensus 40 ~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~ 84 (93)
T 3t98_B 40 NNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSY 84 (93)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567999999999999999988666666666666666554443
No 21
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=29.44 E-value=77 Score=22.86 Aligned_cols=40 Identities=15% Similarity=0.220 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhh
Q 047968 18 KVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEV 57 (81)
Q Consensus 18 ~i~~fvr~l~~gF~~Lnlkn~~LrkK~d~lKyslkKvE~v 57 (81)
++..=...+.+.|..|...-+.|+.-.|.|+.+++|+|.=
T Consensus 34 ~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn 73 (206)
T 3oa7_A 34 QLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGN 73 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCC
Confidence 3444455666788888888888999999999999999864
No 22
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=27.73 E-value=24 Score=18.63 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=16.3
Q ss_pred ChHHHHHHHHHHHHHHHHHh
Q 047968 37 NDFLRKKFDSLKYDLKRVEE 56 (81)
Q Consensus 37 n~~LrkK~d~lKyslkKvE~ 56 (81)
.+.|+||+-.|+..+-.+|+
T Consensus 6 i~avKkKiq~lq~q~d~aee 25 (37)
T 3azd_A 6 LEAVRRKIRSLQEQNYHLEN 25 (37)
T ss_dssp CHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47899999999988876665
No 23
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=27.70 E-value=15 Score=27.88 Aligned_cols=11 Identities=27% Similarity=0.398 Sum_probs=9.2
Q ss_pred CceeeeecccC
Q 047968 1 PRYVVNQVLAG 11 (81)
Q Consensus 1 ~R~aiN~vt~G 11 (81)
.|||||+++.-
T Consensus 282 ~RyCiNs~sL~ 292 (313)
T 3e0m_A 282 LRYCINSASLR 292 (313)
T ss_dssp CEEEECGGGEE
T ss_pred CEEeeceeeEe
Confidence 39999999874
No 24
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=27.40 E-value=1.5e+02 Score=20.82 Aligned_cols=41 Identities=15% Similarity=0.171 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHhcccCC-hHHHHHHHHHHHHHHHHH
Q 047968 15 CPRKVLRFLTDLHAAFRMLNLRN-DFLRKKFDSLKYDLKRVE 55 (81)
Q Consensus 15 ~p~~i~~fvr~l~~gF~~Lnlkn-~~LrkK~d~lKyslkKvE 55 (81)
.|......++.|...|..+++.| +..++.+..++..|.++.
T Consensus 121 dp~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld 162 (284)
T 2prs_A 121 SPEIARATAVAIHGKLVELMPQSRAKLDANLKDFEAQLASTE 162 (284)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHH
Confidence 47888899999999999999987 445555555555555544
No 25
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=26.93 E-value=1.5e+02 Score=20.81 Aligned_cols=42 Identities=7% Similarity=0.061 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHhcccCC-hHHHHHHHHHHHHHHHHHh
Q 047968 15 CPRKVLRFLTDLHAAFRMLNLRN-DFLRKKFDSLKYDLKRVEE 56 (81)
Q Consensus 15 ~p~~i~~fvr~l~~gF~~Lnlkn-~~LrkK~d~lKyslkKvE~ 56 (81)
.|......++.|...|..+++.| +..++.+..+...|.++..
T Consensus 124 dp~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~ 166 (284)
T 3cx3_A 124 DPEKAGEEAQIIADKLSEVDSEHKETYQKNAQAFIKKAQELTK 166 (284)
T ss_dssp SHHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHH
Confidence 47788899999999999999987 4455556666555555443
No 26
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=26.41 E-value=1.5e+02 Score=20.94 Aligned_cols=42 Identities=21% Similarity=0.310 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHhcccCC-hHHHHHHHHHHHHHHHHHh
Q 047968 15 CPRKVLRFLTDLHAAFRMLNLRN-DFLRKKFDSLKYDLKRVEE 56 (81)
Q Consensus 15 ~p~~i~~fvr~l~~gF~~Lnlkn-~~LrkK~d~lKyslkKvE~ 56 (81)
.|......++.|...|..+++.| +..++.++.+...|.++..
T Consensus 137 dp~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~ 179 (291)
T 1pq4_A 137 SPTLVKRQATTIAKELAELDPDNRDQYEANLAAFLAELERLNQ 179 (291)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHH
Confidence 38888899999999999999987 4556666666666665544
No 27
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=26.16 E-value=1.5e+02 Score=21.27 Aligned_cols=42 Identities=12% Similarity=0.211 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHhcccCC-hHHHHHHHHHHHHHHHHHh
Q 047968 15 CPRKVLRFLTDLHAAFRMLNLRN-DFLRKKFDSLKYDLKRVEE 56 (81)
Q Consensus 15 ~p~~i~~fvr~l~~gF~~Lnlkn-~~LrkK~d~lKyslkKvE~ 56 (81)
.|......++.|...+..+++.| +..++.+..+...|.++..
T Consensus 137 dp~n~~~~a~~I~~~L~~~DP~~a~~Y~~N~~~~~~~L~~Ld~ 179 (312)
T 2o1e_A 137 SPVLAQKEVKNITAQIVKQDPDNKEYYEKNSKEYIAKLQDLDK 179 (312)
T ss_dssp SHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHH
Confidence 47778899999999999999987 4455556555555555443
No 28
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=25.28 E-value=54 Score=19.25 Aligned_cols=38 Identities=11% Similarity=0.145 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHH
Q 047968 17 RKVLRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRV 54 (81)
Q Consensus 17 ~~i~~fvr~l~~gF~~Lnlkn~~LrkK~d~lKyslkKv 54 (81)
....++|+.+...-..|.-..+.|++....|+..|..+
T Consensus 43 ~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 43 DKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567777777776666555566777777766666543
No 29
>1olg_A Tumor suppressor P53 (oligomerization domain); anti-oncogene; NMR {Homo sapiens} SCOP: a.53.1.1 PDB: 1olh_A 1sae_A 1saf_A 1sag_A 1sah_A 1sai_A 1saj_A 1sak_A 1sal_A 3sak_A
Probab=24.28 E-value=7.4 Score=21.69 Aligned_cols=15 Identities=20% Similarity=0.543 Sum_probs=11.6
Q ss_pred HHhhhheeEeecccC
Q 047968 54 VEEVYYDMKIRHLAN 68 (81)
Q Consensus 54 vE~v~YdL~lRg~~~ 68 (81)
.++-+|.|.|||-+.
T Consensus 5 ~D~E~ftL~VrGRe~ 19 (42)
T 1olg_A 5 LDGEYFTLQIRGRER 19 (42)
T ss_dssp CCCCEEEEEEESHHH
T ss_pred cCCCEEEEEEecHHH
Confidence 355689999999664
No 30
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=24.19 E-value=65 Score=18.08 Aligned_cols=20 Identities=10% Similarity=0.318 Sum_probs=13.1
Q ss_pred CChHHHHHHHHHHHHHHHHH
Q 047968 36 RNDFLRKKFDSLKYDLKRVE 55 (81)
Q Consensus 36 kn~~LrkK~d~lKyslkKvE 55 (81)
-|.+|+.|++.|+..+..+.
T Consensus 27 E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 27 ELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35677777777776665544
No 31
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=24.04 E-value=81 Score=18.00 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 047968 38 DFLRKKFDSLKYDLKRVEE 56 (81)
Q Consensus 38 ~~LrkK~d~lKyslkKvE~ 56 (81)
.+|.|.+--.|-.+||+|+
T Consensus 17 eeler~lrk~kk~iKklEd 35 (50)
T 1a92_A 17 EELERDLRKLKKKIKKLEE 35 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 4566666667777777776
No 32
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=23.97 E-value=80 Score=19.49 Aligned_cols=36 Identities=19% Similarity=0.344 Sum_probs=27.6
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHHHHHHHhhhhee
Q 047968 26 LHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVYYDM 61 (81)
Q Consensus 26 l~~gF~~Lnlkn~~LrkK~d~lKyslkKvE~v~YdL 61 (81)
+......|.-.|..|+.++..|+..+..+-+++-.+
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 334444555568999999999999999999987764
No 33
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=23.95 E-value=83 Score=17.91 Aligned_cols=36 Identities=19% Similarity=0.376 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhhh
Q 047968 23 LTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEVY 58 (81)
Q Consensus 23 vr~l~~gF~~Lnlkn~~LrkK~d~lKyslkKvE~v~ 58 (81)
..++......|.-.|+.|+.++..|+..+.-+-+.+
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777778999999999988877665543
No 34
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=23.69 E-value=1.8e+02 Score=20.94 Aligned_cols=40 Identities=5% Similarity=0.036 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHhcccCC-hHHHHHHHHHHHHHHHH
Q 047968 15 CPRKVLRFLTDLHAAFRMLNLRN-DFLRKKFDSLKYDLKRV 54 (81)
Q Consensus 15 ~p~~i~~fvr~l~~gF~~Lnlkn-~~LrkK~d~lKyslkKv 54 (81)
.|......++.|...+..+++.| +.-++.++.+...|+++
T Consensus 142 dp~n~~~~a~~I~~~L~~~DP~~a~~Y~~N~~~~~~~L~~L 182 (313)
T 1toa_A 142 DVKLWSYSVKAVYESLCKLLPGKTREFTQRYQAYQQQLDKL 182 (313)
T ss_dssp SHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHHHHH
Confidence 47778899999999999999987 33444444444444443
No 35
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=23.45 E-value=60 Score=19.34 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 047968 38 DFLRKKFDSLKYDLKRVEE 56 (81)
Q Consensus 38 ~~LrkK~d~lKyslkKvE~ 56 (81)
--|+||+|-|..+++++-+
T Consensus 35 aKL~Rk~DKl~~ele~l~~ 53 (65)
T 3sja_C 35 TKNNRKLDSLDKEINNLKD 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3599999999999988754
No 36
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=23.20 E-value=35 Score=18.06 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhcccCChHHHHHHHHHH
Q 047968 20 LRFLTDLHAAFRMLNLRNDFLRKKFDSLK 48 (81)
Q Consensus 20 ~~fvr~l~~gF~~Lnlkn~~LrkK~d~lK 48 (81)
-.=|..+...|.+|-++-..|+.|...||
T Consensus 7 kekvsalkeqflmlmfkvsalkekvsalk 35 (36)
T 3tq2_A 7 KEKVSALKEQFLMLMFKVSALKEKVSALK 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566778889888888777887777665
No 37
>2k0n_A Mediator of RNA polymerase II transcription subunit 15; protein, activator, nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae}
Probab=22.27 E-value=1.5e+02 Score=18.50 Aligned_cols=49 Identities=16% Similarity=0.216 Sum_probs=25.1
Q ss_pred eeecccCCchhHHHHHHHHHHHHHHH-Hhccc---CChHHHHHHHHHHHHHHH
Q 047968 5 VNQVLAGNYDCPRKVLRFLTDLHAAF-RMLNL---RNDFLRKKFDSLKYDLKR 53 (81)
Q Consensus 5 iN~vt~Gd~~~p~~i~~fvr~l~~gF-~~Lnl---kn~~LrkK~d~lKyslkK 53 (81)
||.+--||-+...++-.--+++-+.+ ..-+. .-|.+|+|++.|++.+.+
T Consensus 26 In~iNGG~~~~~EKlk~~A~~FEaaLyaksSSK~eYmdsMr~ki~aMr~t~~~ 78 (85)
T 2k0n_A 26 INTLNGGSSDTADKIRIHAKNFEAALFAKSSSKKEYMDSMNEKVAVMRNTYNT 78 (85)
T ss_dssp HHHHHSCSTTHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCchhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566655544433333332221 11122 247888888888776654
No 38
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=22.16 E-value=2e+02 Score=20.82 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHhcccCC-hHHHHHHHHHHHHHHH
Q 047968 15 CPRKVLRFLTDLHAAFRMLNLRN-DFLRKKFDSLKYDLKR 53 (81)
Q Consensus 15 ~p~~i~~fvr~l~~gF~~Lnlkn-~~LrkK~d~lKyslkK 53 (81)
.|......++.|.+.+..+++.| +..++.++.+...|.+
T Consensus 149 dp~n~~~~a~~I~~~L~~~DP~~a~~Y~~Na~~~~~~L~~ 188 (321)
T 1xvl_A 149 SPRNALVYVENIRQAFVELDPDNAKYYNANAAVYSEQLKA 188 (321)
T ss_dssp SHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHH
Confidence 57888899999999999999987 3344444444444433
No 39
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=22.15 E-value=2.1e+02 Score=20.22 Aligned_cols=41 Identities=12% Similarity=0.134 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHHhcccCC-hHHHHHHHHHHHHHHHHH
Q 047968 15 CPRKVLRFLTDLHAAFRMLNLRN-DFLRKKFDSLKYDLKRVE 55 (81)
Q Consensus 15 ~p~~i~~fvr~l~~gF~~Lnlkn-~~LrkK~d~lKyslkKvE 55 (81)
.|......++.|...|..+++.| +.-++.+..+...|..+.
T Consensus 126 dp~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld 167 (286)
T 3gi1_A 126 DPVLAGEEAVNIAKELGRLDPKHKDSYTKNAKAFKKEAEQLT 167 (286)
T ss_dssp SHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHHHHHH
Confidence 47788889999999999999986 445555555555555544
No 40
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=21.38 E-value=2.1e+02 Score=20.62 Aligned_cols=40 Identities=23% Similarity=0.426 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHhcccCC-hHHHHHHHHHHHHHHHH
Q 047968 15 CPRKVLRFLTDLHAAFRMLNLRN-DFLRKKFDSLKYDLKRV 54 (81)
Q Consensus 15 ~p~~i~~fvr~l~~gF~~Lnlkn-~~LrkK~d~lKyslkKv 54 (81)
.|.....+++.|...|..+++.| +.-++.+..+...|..+
T Consensus 135 dp~n~~~~a~~I~~~L~~~DP~~a~~Y~~Na~~~~~~L~~L 175 (307)
T 3ujp_A 135 SPRNALVYVENIRQAFVELDPDNAKYYNANAAVYSEQLKAI 175 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHH
Confidence 47788889999999999999976 33444444444444433
No 41
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=21.17 E-value=64 Score=18.13 Aligned_cols=38 Identities=16% Similarity=0.255 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhh
Q 047968 20 LRFLTDLHAAFRMLNLRNDFLRKKFDSLKYDLKRVEEV 57 (81)
Q Consensus 20 ~~fvr~l~~gF~~Lnlkn~~LrkK~d~lKyslkKvE~v 57 (81)
-+.+.++......|.-.|..|+..+..|+..+..+...
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777778888889999999888887766543
No 42
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=21.14 E-value=44 Score=18.73 Aligned_cols=36 Identities=14% Similarity=0.335 Sum_probs=18.1
Q ss_pred HHHHHHHH----HHHHHHHHhccc----CChHHHHHHHHHHHHH
Q 047968 16 PRKVLRFL----TDLHAAFRMLNL----RNDFLRKKFDSLKYDL 51 (81)
Q Consensus 16 p~~i~~fv----r~l~~gF~~Lnl----kn~~LrkK~d~lKysl 51 (81)
|..+..|| .++.+-|+...- +-|++.+|+|.|..|+
T Consensus 4 ~~dLt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE~si 47 (48)
T 3ci9_A 4 VQDLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDLEKNI 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 44455554 555566665432 3466666666665543
No 43
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=20.73 E-value=84 Score=20.07 Aligned_cols=18 Identities=33% Similarity=0.446 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 047968 38 DFLRKKFDSLKYDLKRVE 55 (81)
Q Consensus 38 ~~LrkK~d~lKyslkKvE 55 (81)
+.|++||.+|+..+..+.
T Consensus 2 ~~~~~~~~~l~~~~~~~~ 19 (284)
T 1c1g_A 2 DAIKKKMQMLKLDKENAL 19 (284)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHH
Confidence 345566666655555443
No 44
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=20.25 E-value=2.2e+02 Score=20.05 Aligned_cols=40 Identities=8% Similarity=0.063 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHHhcccCC-hHHHHHHHHHHHHHHHH
Q 047968 15 CPRKVLRFLTDLHAAFRMLNLRN-DFLRKKFDSLKYDLKRV 54 (81)
Q Consensus 15 ~p~~i~~fvr~l~~gF~~Lnlkn-~~LrkK~d~lKyslkKv 54 (81)
.|......++.|...+..+++.| +.-++.+..++..|..+
T Consensus 108 dp~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~l 148 (282)
T 3mfq_A 108 SIPLYKSAVAVASEELQKLLPAKAEMIQKNTEKYQAQLDDL 148 (282)
T ss_dssp SHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHH
Confidence 37888899999999999999986 33444444444444433
No 45
>3zy0_A Tumor protein P63; transcription, transcription factor, tetramerization domain, cycle control; HET: MSE; 1.90A {Homo sapiens}
Probab=20.10 E-value=23 Score=18.52 Aligned_cols=12 Identities=8% Similarity=0.063 Sum_probs=9.7
Q ss_pred hhheeEeecccC
Q 047968 57 VYYDMKIRHLAN 68 (81)
Q Consensus 57 v~YdL~lRg~~~ 68 (81)
-+|.|+|||.+.
T Consensus 4 e~f~l~VrGRe~ 15 (32)
T 3zy0_A 4 ELLYLPVRGRET 15 (32)
T ss_dssp CCEEEEESSHHH
T ss_pred cEEEEEEechhh
Confidence 379999999764
Done!