BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047970
(304 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 185 bits (470), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 123/359 (34%), Positives = 176/359 (49%), Gaps = 74/359 (20%)
Query: 2 LRKKTAWVQAGVTIGELYHRISEKSKYLGFPAG-------------------VRS----- 37
+ +TAWV+AG T+GE+Y+ I+EK++ L FP G +R+
Sbjct: 115 VHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAA 174
Query: 38 --------------ILDRKSMGEDLFWALHGGGAASFGIIVAWKXXXXXXXXXXXXXXXX 83
+LDRKSMGEDLFWA+ GGG +FGII AWK
Sbjct: 175 DNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVK 234
Query: 84 RTLE-QDATKIFQKWQSAADKLPEDLTCSAIFAVRN---------SNIVALFSSLFLGRA 133
+ +E K+F KWQ+ A K +DL F +N + + FSS+F G
Sbjct: 235 KNMEIHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGV 294
Query: 134 DQQWATYSHWVESLPELGLKKEDCMELSWVESIVYFD--RGFXXXXXXXXXXXXXRNYSK 191
D + +S PELG+KK DC E SW+++ +++ F K
Sbjct: 295 DSLVDLMN---KSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKK 351
Query: 192 SFWKMRADFVMKPI----LVKGLEGMYDFFHEQGGKNLQVVAFPYSGKLAKIPESAISFP 247
+ + ++ D+V KPI +VK LE +Y+ E G + V+ +PY G + +I ESAI FP
Sbjct: 352 TAFSIKLDYVKKPIPETAMVKILEKLYE---EDVGAGMYVL-YPYGGIMEEISESAIPFP 407
Query: 248 HRAGNIYH------WMEP-------NLVRKLSNYTTPYVSKNPRATYLNVRDLEIGRNN 293
HRAG +Y W + N VR + N+TTPYVS+NPR YLN RDL++G+ N
Sbjct: 408 HRAGIMYELWYTASWEKQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTN 466
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 162 bits (409), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 102/342 (29%), Positives = 159/342 (46%), Gaps = 63/342 (18%)
Query: 3 RKKTAWVQAGVTIGELYHRISEKSKYLGFPAGVRS------------------------- 37
+ TAWV +G +G+LY+ I++ S LGFPAGV +
Sbjct: 119 KAATAWVDSGAQLGDLYYGIAKASPKLGFPAGVCTTIGVGGHFSGGGFGMLLRKYGTAAD 178
Query: 38 -------------ILDRKSMGEDLFWALHGGGAASFGIIVAWKXXXXXXXXXXXXXXXXR 84
+LDRK+MGED FWA+ GGG SFGI+ +W+ +
Sbjct: 179 NVIDAKVVDAQGRLLDRKAMGEDHFWAIRGGGGESFGIVASWQVKLLPVPPKVTVFQVHK 238
Query: 85 TLEQDATKIFQKWQSAADKLPEDLTCSAIFAVRNSNIVALFSSLFLGRADQQWATYSHWV 144
+++ A + KWQ+ A LP+DL I A+ A+F +L+LG +
Sbjct: 239 GIKEGAIDLVTKWQTVAPALPDDLMIR-IMAMGQG---AMFEALYLGTCKDLVLLMT--- 291
Query: 145 ESLPELGLKKEDCMELSWVESIVYFDRGFXXXXXXXXXXXXXRNYSKSFWKMRADFVMKP 204
PELG+ C E++W+ES+ Y G + K+F K ++D+V++P
Sbjct: 292 ARFPELGMNATHCKEMTWIESVPYIPMG---PKGTVRDLLNRTSNIKAFGKYKSDYVLEP 348
Query: 205 ILVKGLEGMYDFFHEQGGKNLQVVAFPYSGKLAKIPESAISFPHRAGNIY------HW-- 256
I E ++ + + G + + PY G +A +PESA FP R+G ++ +W
Sbjct: 349 IPKSDWEKIFTWLVKPGAGVM--IMDPYGGGIASVPESATPFPRRSGVLFNIQYVVYWFG 406
Query: 257 -----MEPNLVRKLSNYTTPYVSKNPRATYLNVRDLEIGRNN 293
+ R + ++ TPYVSKNPR Y+N RDL++G N
Sbjct: 407 EGAAALPTQWTRDIYDFMTPYVSKNPRQAYVNYRDLDLGVNQ 448
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 158 bits (400), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 102/341 (29%), Positives = 148/341 (43%), Gaps = 61/341 (17%)
Query: 3 RKKTAWVQAGVTIGELYHRISEKSKYLGFPAGVRSIL----------------------- 39
+ +TAWV +G +GELY+ I + S L FPAGV +
Sbjct: 117 KARTAWVDSGAQLGELYYAIYKASPTLAFPAGVCPTIGVGGNFAGGGFGMLLRKYGIAAE 176
Query: 40 ---------------DRKSMGEDLFWALHGGGAASFGIIVAWKXXXXXXXXXXXXXXXXR 84
D+KSMG+D FWA+ GGG SFGI+VAW+ +
Sbjct: 177 NVIDVKLVDANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISK 236
Query: 85 TLEQDATKIFQKWQSAADKLPEDLTCSAIFAVRNSNIVALFSSLFLGRADQQWATYSHWV 144
T+ + A I KWQ A +LP DL I A F +++LG S
Sbjct: 237 TVSEGAVDIINKWQVVAPQLPADLMIRII----AQGPKATFEAMYLGTCKTLTPLMS--- 289
Query: 145 ESLPELGLKKEDCMELSWVESIVYFDRGFXXXXXXXXXXXXXRNYSKSFWKMRADFVMKP 204
PELG+ C E+SW++SI + G +N K F + ++D+V +P
Sbjct: 290 SKFPELGMNPSHCNEMSWIQSIPFVHLGH--RDALEDDLLNRQNSFKPFAEYKSDYVYQP 347
Query: 205 ILVKGLEGMYDFFHEQGGKNLQVVAFPYSGKLAKIPESAISFPHRAGNIY------HWME 258
E + + + + G + + PY ++ PESA FPHR G ++ +W
Sbjct: 348 FPKTVWEQILNTWLVKPGAGIMIFD-PYGATISATPESATPFPHRKGVLFNIQYVNYWFA 406
Query: 259 PNLV-------RKLSNYTTPYVSKNPRATYLNVRDLEIGRN 292
P + + NY PYVSKNPR Y N RD+++GRN
Sbjct: 407 PGAAAAPLSWSKDIYNYMEPYVSKNPRQAYANYRDIDLGRN 447
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 149/357 (41%), Gaps = 63/357 (17%)
Query: 2 LRKKTAWVQAGVTIGELYHRISEKSKYLGFPAG--------------------------- 34
L +TAWV++G T+GELY+ I+E S LGF AG
Sbjct: 107 LESETAWVESGSTLGELYYAITESSSKLGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAA 166
Query: 35 -----------VRSILDRKSMGEDLFWALHGGGAASFGIIVAWKXXXXXXXXXXXXXXXX 83
+ILDR++MGED+FWA+ GGG +G I AWK
Sbjct: 167 DNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVT 226
Query: 84 RTLEQD-ATKIFQKWQSAADKLPEDLTCSAIFAVRNSNIVALFSSLFLGRADQQWATYSH 142
+ + D AT + KWQ A++L ED T S + + G +T+
Sbjct: 227 KNVAIDEATSLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDL 286
Query: 143 WVESLPELGLKKEDCMELSWVESIVYFDRGFXXXXXXXXXXXXXRNYSKSFWKMRADFVM 202
PELGL +ED +E+SW ES Y + + +K + D
Sbjct: 287 L---FPELGLVEEDYLEMSWGESFAY----LAGLETVSQLNNRFLKFDERAFKTKVDLTK 339
Query: 203 KPILVKGLEGMYDFFHEQGGKNLQVVAFPYSGKLAKIPESAISFPHRAGN------IYHW 256
+P+ K G+ + ++ + + F G+++KI FPHR+G I W
Sbjct: 340 EPLPSKAFYGLLERLSKEPNGFIALNGF--GGQMSKISSDFTPFPHRSGTRLMVEYIVAW 397
Query: 257 MEP---------NLVRKLSNYTTPYVSKNPRATYLNVRDLEIGRNNKGYTSVKEASI 304
+ + + K+ + P+VSKNPR Y+N DL++G + G +V +I
Sbjct: 398 NQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAI 454
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 149/357 (41%), Gaps = 63/357 (17%)
Query: 2 LRKKTAWVQAGVTIGELYHRISEKSKYLGFPAG--------------------------- 34
L +TAWV++G T+GELY+ I+E S LGF AG
Sbjct: 107 LESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAA 166
Query: 35 -----------VRSILDRKSMGEDLFWALHGGGAASFGIIVAWKXXXXXXXXXXXXXXXX 83
+ILDR++MGED+FWA+ GGG +G I AWK
Sbjct: 167 DNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVT 226
Query: 84 RTLEQD-ATKIFQKWQSAADKLPEDLTCSAIFAVRNSNIVALFSSLFLGRADQQWATYSH 142
+ + D AT + KWQ A++L ED T S + + G +T+
Sbjct: 227 KNVAIDEATSLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDL 286
Query: 143 WVESLPELGLKKEDCMELSWVESIVYFDRGFXXXXXXXXXXXXXRNYSKSFWKMRADFVM 202
PELGL +ED +E+SW ES Y + + +K + D
Sbjct: 287 L---FPELGLVEEDYLEMSWGESFAY----LAGLETVSQLNNRFLKFDERAFKTKVDLTK 339
Query: 203 KPILVKGLEGMYDFFHEQGGKNLQVVAFPYSGKLAKIPESAISFPHRAGN------IYHW 256
+P+ K G+ + ++ + + F G+++KI FPHR+G I W
Sbjct: 340 EPLPSKAFYGLLERLSKEPNGFIALNGF--GGQMSKISSDFTPFPHRSGTRLMVEYIVAW 397
Query: 257 MEP---------NLVRKLSNYTTPYVSKNPRATYLNVRDLEIGRNNKGYTSVKEASI 304
+ + + K+ + P+VSKNPR Y+N DL++G + G +V +I
Sbjct: 398 NQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAI 454
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 149/357 (41%), Gaps = 63/357 (17%)
Query: 2 LRKKTAWVQAGVTIGELYHRISEKSKYLGFPAG--------------------------- 34
L +TAWV++G T+GELY+ I+E S LGF AG
Sbjct: 107 LESETAWVESGSTLGELYYAITESSSKLGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAA 166
Query: 35 -----------VRSILDRKSMGEDLFWALHGGGAASFGIIVAWKXXXXXXXXXXXXXXXX 83
+ILDR++MGED+FWA+ GGG +G I AWK
Sbjct: 167 DNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVT 226
Query: 84 RTLEQD-ATKIFQKWQSAADKLPEDLTCSAIFAVRNSNIVALFSSLFLGRADQQWATYSH 142
+ + D AT + KWQ A++L ED T S + + G +T+
Sbjct: 227 KNVAIDEATSLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDL 286
Query: 143 WVESLPELGLKKEDCMELSWVESIVYFDRGFXXXXXXXXXXXXXRNYSKSFWKMRADFVM 202
PELGL +ED +E+SW ES Y + + +K + D
Sbjct: 287 L---FPELGLVEEDYLEMSWGESFAY----LAGLETVSQLNNRFLKFDERAFKTKVDLTK 339
Query: 203 KPILVKGLEGMYDFFHEQGGKNLQVVAFPYSGKLAKIPESAISFPHRAGN------IYHW 256
+P+ K G+ + ++ + + F G+++KI FPHR+G I W
Sbjct: 340 EPLPSKAFYGLLERLSKEPNGFIALNGF--GGQMSKISSDFTPFPHRSGTRLMVEYIVAW 397
Query: 257 MEP---------NLVRKLSNYTTPYVSKNPRATYLNVRDLEIGRNNKGYTSVKEASI 304
+ + + K+ + P+VSKNPR Y+N DL++G + G +V +I
Sbjct: 398 NQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAI 454
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 149/357 (41%), Gaps = 63/357 (17%)
Query: 2 LRKKTAWVQAGVTIGELYHRISEKSKYLGFPAG--------------------------- 34
L +TAWV++G T+GELY+ I+E S LGF AG
Sbjct: 113 LESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGAISGGGFGMMSRKYGLAA 172
Query: 35 -----------VRSILDRKSMGEDLFWALHGGGAASFGIIVAWKXXXXXXXXXXXXXXXX 83
+ILDR++MGED+FWA+ GGG +G I AWK
Sbjct: 173 DNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVT 232
Query: 84 RTLEQD-ATKIFQKWQSAADKLPEDLTCSAIFAVRNSNIVALFSSLFLGRADQQWATYSH 142
+ + D AT + KWQ A++L ED T S + + G +T+
Sbjct: 233 KNVAIDEATSLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDL 292
Query: 143 WVESLPELGLKKEDCMELSWVESIVYFDRGFXXXXXXXXXXXXXRNYSKSFWKMRADFVM 202
PELGL +ED +E+SW ES Y + + +K + D
Sbjct: 293 L---FPELGLVEEDYLEMSWGESFAY----LAGLETVSQLNNRFLKFDERAFKTKVDLTK 345
Query: 203 KPILVKGLEGMYDFFHEQGGKNLQVVAFPYSGKLAKIPESAISFPHRAGN------IYHW 256
+P+ K G+ + ++ + + F G+++KI FPHR+G I W
Sbjct: 346 EPLPSKAFYGLLERLSKEPNGFIALNGF--GGQMSKISSDFTPFPHRSGTRLMVEYIVAW 403
Query: 257 MEP---------NLVRKLSNYTTPYVSKNPRATYLNVRDLEIGRNNKGYTSVKEASI 304
+ + + K+ + P+VSKNPR Y+N DL++G + G +V +I
Sbjct: 404 NQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAI 460
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 149/357 (41%), Gaps = 63/357 (17%)
Query: 2 LRKKTAWVQAGVTIGELYHRISEKSKYLGFPAG--------------------------- 34
L +TAWV++G T+GELY+ I+E S LGF AG
Sbjct: 113 LESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAA 172
Query: 35 -----------VRSILDRKSMGEDLFWALHGGGAASFGIIVAWKXXXXXXXXXXXXXXXX 83
+ILDR++MGED+FWA+ GGG +G I AWK
Sbjct: 173 DNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVT 232
Query: 84 RTLEQD-ATKIFQKWQSAADKLPEDLTCSAIFAVRNSNIVALFSSLFLGRADQQWATYSH 142
+ + D AT + KWQ A++L ED T S + + G +T+
Sbjct: 233 KNVAIDEATSLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDL 292
Query: 143 WVESLPELGLKKEDCMELSWVESIVYFDRGFXXXXXXXXXXXXXRNYSKSFWKMRADFVM 202
PELGL +ED +E+SW ES Y + + +K + D
Sbjct: 293 L---FPELGLVEEDYLEMSWGESFAY----LAGLETVSQLNNRFLKFDERAFKTKVDLTK 345
Query: 203 KPILVKGLEGMYDFFHEQGGKNLQVVAFPYSGKLAKIPESAISFPHRAGN------IYHW 256
+P+ K G+ + ++ + + F G+++KI FPHR+G I W
Sbjct: 346 EPLPSKAFYGLLERLSKEPNGFIALNGF--GGQMSKISSDFTPFPHRSGTRLMVEYIVAW 403
Query: 257 MEP---------NLVRKLSNYTTPYVSKNPRATYLNVRDLEIGRNNKGYTSVKEASI 304
+ + + K+ + P+VSKNPR Y+N DL++G + G +V +I
Sbjct: 404 NQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAI 460
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 149/357 (41%), Gaps = 63/357 (17%)
Query: 2 LRKKTAWVQAGVTIGELYHRISEKSKYLGFPAG--------------------------- 34
L +TAWV++G T+GELY+ I+E S LGF AG
Sbjct: 110 LESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAA 169
Query: 35 -----------VRSILDRKSMGEDLFWALHGGGAASFGIIVAWKXXXXXXXXXXXXXXXX 83
+ILDR++MGED+FWA+ GGG +G I AWK
Sbjct: 170 DNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVT 229
Query: 84 RTLEQD-ATKIFQKWQSAADKLPEDLTCSAIFAVRNSNIVALFSSLFLGRADQQWATYSH 142
+ + D AT + KWQ A++L ED T S + + G +T+
Sbjct: 230 KNVAIDEATSLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDL 289
Query: 143 WVESLPELGLKKEDCMELSWVESIVYFDRGFXXXXXXXXXXXXXRNYSKSFWKMRADFVM 202
PELGL +ED +E+SW ES Y + + +K + D
Sbjct: 290 L---FPELGLVEEDYLEMSWGESFAY----LAGLETVSQLNNRFLKFDERAFKTKVDLTK 342
Query: 203 KPILVKGLEGMYDFFHEQGGKNLQVVAFPYSGKLAKIPESAISFPHRAGN------IYHW 256
+P+ K G+ + ++ + + F G+++KI FPHR+G I W
Sbjct: 343 EPLPSKAFYGLLERLSKEPNGFIALNGF--GGQMSKISSDFTPFPHRSGTRLMVEYIVAW 400
Query: 257 MEP---------NLVRKLSNYTTPYVSKNPRATYLNVRDLEIGRNNKGYTSVKEASI 304
+ + + K+ + P+VSKNPR Y+N DL++G + G +V +I
Sbjct: 401 NQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAI 457
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 149/357 (41%), Gaps = 63/357 (17%)
Query: 2 LRKKTAWVQAGVTIGELYHRISEKSKYLGFPAG--------------------------- 34
L +TAWV++G T+GELY+ I+E S LGF AG
Sbjct: 132 LESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAA 191
Query: 35 -----------VRSILDRKSMGEDLFWALHGGGAASFGIIVAWKXXXXXXXXXXXXXXXX 83
+ILDR++MGED+FWA+ GGG +G I AWK
Sbjct: 192 DNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVT 251
Query: 84 RTLEQD-ATKIFQKWQSAADKLPEDLTCSAIFAVRNSNIVALFSSLFLGRADQQWATYSH 142
+ + D AT + KWQ A++L ED T S + + G +T+
Sbjct: 252 KNVAIDEATSLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDL 311
Query: 143 WVESLPELGLKKEDCMELSWVESIVYFDRGFXXXXXXXXXXXXXRNYSKSFWKMRADFVM 202
PELGL +ED +E+SW ES Y + + +K + D
Sbjct: 312 L---FPELGLVEEDYLEMSWGESFAY----LAGLETVSQLNNRFLKFDERAFKTKVDLTK 364
Query: 203 KPILVKGLEGMYDFFHEQGGKNLQVVAFPYSGKLAKIPESAISFPHRAGN------IYHW 256
+P+ K G+ + ++ + + F G+++KI FPHR+G I W
Sbjct: 365 EPLPSKAFYGLLERLSKEPNGFIALNGF--GGQMSKISSDFTPFPHRSGTRLMVEYIVAW 422
Query: 257 MEP---------NLVRKLSNYTTPYVSKNPRATYLNVRDLEIGRNNKGYTSVKEASI 304
+ + + K+ + P+VSKNPR Y+N DL++G + G +V +I
Sbjct: 423 NQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAI 479
>pdb|4EI7|A Chain A, Crystal Structure Of Bacillus Cereus Tubz, Gdp-Form
pdb|4EI7|B Chain B, Crystal Structure Of Bacillus Cereus Tubz, Gdp-Form
pdb|4EI9|A Chain A, Crystal Structure Of Bacillus Cereus Tubz, Gtp-Form
pdb|4EI9|B Chain B, Crystal Structure Of Bacillus Cereus Tubz, Gtp-Form
Length = 389
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 242 SAISFPHRAGNIYHWMEPNLVRKLSNYTTPYVSKNPRATYLN 283
S ++ P RAG +Y++ N + TPYV + P A Y+N
Sbjct: 299 SIVTSPLRAGRLYNFSFLNQMENFLKERTPYVDERPIAPYVN 340
>pdb|4EI8|A Chain A, Crystal Structure Of Bacillus Cereus Tubz, Apo-Form
Length = 389
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 242 SAISFPHRAGNIYHWMEPNLVRKLSNYTTPYVSKNPRATYLN 283
S ++ P RAG +Y++ N TPYV + P A Y+N
Sbjct: 299 SIVTSPLRAGRLYNFSFLNQXENFLKERTPYVDERPIAPYVN 340
>pdb|1GSA|A Chain A, Structure Of Glutathione Synthetase Complexed With Adp And
Glutathione
pdb|1GSH|A Chain A, Structure Of Escherichia Coli Glutathione Synthetase At Ph
7.5
pdb|2GLT|A Chain A, Structure Of Escherichia Coli Glutathione Synthetase At Ph
6.0
Length = 316
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 191 KSFWKMRADFVMKPILVKGLEGMYDFFHEQGGKNLQVVA 229
K+FW+ +D ++KP+ G+ G F ++G NL V+A
Sbjct: 148 KAFWEKHSDIILKPL--DGMGGASIFRVKEGDPNLGVIA 184
>pdb|1GLV|A Chain A, Three-Dimensional Structure Of The Glutathione Synthetase
From Escherichia Coli B At 2.0 Angstroms Resolution
Length = 303
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 191 KSFWKMRADFVMKPILVKGLEGMYDFFHEQGGKNLQVVA 229
K+FW+ +D ++KP+ G+ G F ++G NL V+A
Sbjct: 148 KAFWEKHSDIILKPL--DGMGGASIFRVKEGDPNLGVIA 184
>pdb|3LM0|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE 17B
(STK17B)
pdb|3LM5|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE 17B
(STK17B) IN Complex With Quercetin
Length = 327
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 24/37 (64%)
Query: 265 LSNYTTPYVSKNPRATYLNVRDLEIGRNNKGYTSVKE 301
L +T+P+V ++ + TYLN+ + + + + ++SV +
Sbjct: 226 LLTHTSPFVGEDNQETYLNISQVNVDYSEETFSSVSQ 262
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 47 DLFWALHGGGAASFGIIVAWK 67
DLFW + G G+ +FGI+ WK
Sbjct: 182 DLFWGIKGAGS-NFGIVAVWK 201
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,841,245
Number of Sequences: 62578
Number of extensions: 331113
Number of successful extensions: 811
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 743
Number of HSP's gapped (non-prelim): 29
length of query: 304
length of database: 14,973,337
effective HSP length: 98
effective length of query: 206
effective length of database: 8,840,693
effective search space: 1821182758
effective search space used: 1821182758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)