BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047971
(374 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LW3|A Chain A, Crystal Structure Of Myotubularin-Related Protein 2
Complexed With Phosphate
pdb|1M7R|A Chain A, Crystal Structure Of Myotubularin-Related Protein-2
(Mtmr2) Complexed With Phosphate
pdb|1M7R|B Chain B, Crystal Structure Of Myotubularin-Related Protein-2
(Mtmr2) Complexed With Phosphate
Length = 657
Score = 161 bits (408), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 100/297 (33%), Positives = 156/297 (52%), Gaps = 32/297 (10%)
Query: 71 GTLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSRRLLQVI 130
GTL VTN+R+ F S R+ + L I ++ K+ + + + L+ +
Sbjct: 106 GTLTVTNYRLYFKS-MERDPPFVLDASLGVINRVEKIG-------GASSRGENSYGLETV 157
Query: 131 GKDMRIVVFGFRPKTKQRRAVYDALVKCATP-ARIWDIYAFSSGPSKCVNTNPKVRLLNE 189
KD+R + F +P+ + RR++++ L+K A P + ++AF E
Sbjct: 158 CKDIRNLRFAHKPEGRTRRSIFENLMKYAFPVSNNLPLFAF------------------E 199
Query: 190 YFRLLGKSSSSATMDMIEEGSFTLSNELWRISDINSTYTMCQSYPFALIVPECIIDQELL 249
Y + ++ ++E + NE WRI+ IN Y +C +YP L+VP I D+EL
Sbjct: 200 YKEVFPENGWKLYDPLLEYRRQGIPNESWRITKINERYELCDTYPALLVVPANIPDEELK 259
Query: 250 QASSFRARYRLPVISWCHSGTGAVLARSSQPLVGLMMNMRSNADEKLVASLCTQLAGGKM 309
+ +SFR+R R+PV+SW H + A + R SQP+VG+ RS DEK + ++ A
Sbjct: 260 RVASFRSRGRIPVLSWIHPESQATITRCSQPMVGV-SGKRSKEDEKYLQAIMDSNAQS-- 316
Query: 310 SRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRESFARLRD 366
K++I DARP NA+AN A GGG ES Y +E+VF I NIH MRES +L++
Sbjct: 317 --HKIFIFDARPSVNAVANKAKGGGYESEDAYQNAELVFLDIHNIHVMRESLRKLKE 371
>pdb|1ZSQ|A Chain A, Crystal Structure Of Mtmr2 In Complex With
Phosphatidylinositol 3-Phosphate
pdb|1ZVR|A Chain A, Crystal Structure Of Mtmr2 In Complex With
Phosphatidylinositol 3,5-Bisphosphate
Length = 528
Score = 160 bits (406), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 100/297 (33%), Positives = 156/297 (52%), Gaps = 32/297 (10%)
Query: 71 GTLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSRRLLQVI 130
GTL VTN+R+ F S R+ + L I ++ K+ + + + L+ +
Sbjct: 34 GTLTVTNYRLYFKS-MERDPPFVLDASLGVINRVEKIG-------GASSRGENSYGLETV 85
Query: 131 GKDMRIVVFGFRPKTKQRRAVYDALVKCATP-ARIWDIYAFSSGPSKCVNTNPKVRLLNE 189
KD+R + F +P+ + RR++++ L+K A P + ++AF E
Sbjct: 86 CKDIRNLRFAHKPEGRTRRSIFENLMKYAFPVSNNLPLFAF------------------E 127
Query: 190 YFRLLGKSSSSATMDMIEEGSFTLSNELWRISDINSTYTMCQSYPFALIVPECIIDQELL 249
Y + ++ ++E + NE WRI+ IN Y +C +YP L+VP I D+EL
Sbjct: 128 YKEVFPENGWKLYDPLLEYRRQGIPNESWRITKINERYELCDTYPALLVVPANIPDEELK 187
Query: 250 QASSFRARYRLPVISWCHSGTGAVLARSSQPLVGLMMNMRSNADEKLVASLCTQLAGGKM 309
+ +SFR+R R+PV+SW H + A + R SQP+VG+ RS DEK + ++ A
Sbjct: 188 RVASFRSRGRIPVLSWIHPESQATITRCSQPMVGV-SGKRSKEDEKYLQAIMDSNA---- 242
Query: 310 SRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRESFARLRD 366
K++I DARP NA+AN A GGG ES Y +E+VF I NIH MRES +L++
Sbjct: 243 QSHKIFIFDARPSVNAVANKAKGGGYESEDAYQNAELVFLDIHNIHVMRESLRKLKE 299
>pdb|2YF0|A Chain A, Human Myotubularin Related Protein 6 (Mtmr6)
Length = 512
Score = 130 bits (328), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 147/309 (47%), Gaps = 41/309 (13%)
Query: 66 NTDEAGTLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSRR 125
N GTL +T +LF+ + L +A++EKL A+ P
Sbjct: 22 NKSLTGTLYLTATHLLFIDSHQKETWILHH-HIASVEKL---ALTTSGCP---------- 67
Query: 126 LLQVIGKDMRIVVFGFRPKTKQRRAVYDALVKCATPARIWDIYAFSSGPSKCVNTNPKVR 185
L + K+ R V F P+ + +Y++L++ + A+ D+YAFS P +
Sbjct: 68 -LVIQCKNFRTVHF-IVPRERDCHDIYNSLLQLSKQAKYEDLYAFSYNPKQ--------- 116
Query: 186 LLNEYFRLLGKSSSSATMDMIEE-GSFTLSNELWRISDINSTYTMCQSYPFALIVPECII 244
N+ RL G +D+ EE + N W++SD N Y +C++YP L VP
Sbjct: 117 --NDSERLQGWQ----LIDLAEEYKRMGVPNSHWQLSDANRDYKICETYPRELYVPRIAS 170
Query: 245 DQELLQASSFRARYRLPVISWCHSGTGAVLARSSQPLVGLMMNMRSNADEKLVASLCTQL 304
++ +S FR++ R PV+S+ H A + R SQPL G + R DE L+ + +
Sbjct: 171 KPIIVGSSKFRSKGRFPVLSYYHQDKEAAICRCSQPLSGF--SARCLEDEHLLQA----I 224
Query: 305 AGGKMSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRESFARL 364
+ R +Y+ D RP+ NA+AN A G G E+ NY F GI+NIH MR S +L
Sbjct: 225 SKANPVNRYMYVMDTRPKLNAMANRAAGKGYENEDNYSNIRFQFVGIENIHVMRSSLQKL 284
Query: 365 RDYLDTHGT 373
L+ +GT
Sbjct: 285 ---LEVNGT 290
>pdb|1ZXO|A Chain A, X-Ray Crystal Structure Of Protein Q8a1p1 From Bacteroides
Thetaiotaomicron. Northeast Structural Genomics
Consortium Target Btr25.
pdb|1ZXO|F Chain F, X-Ray Crystal Structure Of Protein Q8a1p1 From Bacteroides
Thetaiotaomicron. Northeast Structural Genomics
Consortium Target Btr25.
pdb|1ZXO|B Chain B, X-Ray Crystal Structure Of Protein Q8a1p1 From Bacteroides
Thetaiotaomicron. Northeast Structural Genomics
Consortium Target Btr25.
pdb|1ZXO|D Chain D, X-Ray Crystal Structure Of Protein Q8a1p1 From Bacteroides
Thetaiotaomicron. Northeast Structural Genomics
Consortium Target Btr25.
pdb|1ZXO|C Chain C, X-Ray Crystal Structure Of Protein Q8a1p1 From Bacteroides
Thetaiotaomicron. Northeast Structural Genomics
Consortium Target Btr25.
pdb|1ZXO|E Chain E, X-Ray Crystal Structure Of Protein Q8a1p1 From Bacteroides
Thetaiotaomicron. Northeast Structural Genomics
Consortium Target Btr25
Length = 291
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 23/59 (38%)
Query: 265 WCHSGTGAVLARSSQPLVGLMMNMRSNADEKLVASLCTQLAGGKMSRRKLYIADARPRK 323
WC GAV+ R + +KL ASL QL GK + Y A P K
Sbjct: 14 WCVVLNGAVIKRLGTKGINPFFQSEEEIQQKLTASLLPQLPEGKFNAVYFYGAGCTPEK 72
>pdb|2HR9|A Chain A, Solution Structure Of Human Translationally Controlled
Tumor Protein
Length = 180
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 17/83 (20%)
Query: 295 KLVASLCTQLAGGKMSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGID-- 352
++ LC ++ G +SR + I D+ NA A G G G+ES+ V G+D
Sbjct: 22 EIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGEGTEST--------VITGVDIV 73
Query: 353 -NIHAMRESFAR------LRDYL 368
N H SF + ++DY+
Sbjct: 74 MNHHLQETSFTKEAYKKYIKDYM 96
>pdb|1YZ1|A Chain A, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein
pdb|1YZ1|B Chain B, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein
pdb|1YZ1|C Chain C, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein
pdb|1YZ1|D Chain D, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein
Length = 174
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 17/83 (20%)
Query: 295 KLVASLCTQLAGGKMSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGID-- 352
++ LC ++ G +SR + I D+ NA A G G G+ES+ V G+D
Sbjct: 24 EIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGEGTEST--------VITGVDIV 75
Query: 353 -NIHAMRESFAR------LRDYL 368
N H SF + ++DY+
Sbjct: 76 MNHHLQETSFTKEAYKKYIKDYM 98
>pdb|3EBM|A Chain A, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein (Htctp) Mutant E12v
pdb|3EBM|B Chain B, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein (Htctp) Mutant E12v
pdb|3EBM|C Chain C, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein (Htctp) Mutant E12v
pdb|3EBM|D Chain D, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein (Htctp) Mutant E12v
Length = 180
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 17/83 (20%)
Query: 295 KLVASLCTQLAGGKMSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGID-- 352
++ LC ++ G +SR + I D+ NA A G G G+ES+ V G+D
Sbjct: 22 EIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGEGTEST--------VITGVDIV 73
Query: 353 -NIHAMRESFAR------LRDYL 368
N H SF + ++DY+
Sbjct: 74 MNHHLQETSFTKEAYKKYIKDYM 96
>pdb|3HY2|A Chain A, Crystal Structure Of Sulfiredoxin In Complex With
Peroxiredoxin I And Atp:mg2+
pdb|3HY2|B Chain B, Crystal Structure Of Sulfiredoxin In Complex With
Peroxiredoxin I And Atp:mg2+
Length = 206
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 26 WDALEWTKIEPVTSSVSHANLDLLLDAERIVVEGYGVVLVNTDEAGTLIVTNFRILFL-- 83
++ LEW + N+ L+ D +R + + YGV + DE +FR LF+
Sbjct: 82 FEHLEWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGV--LKADEG-----ISFRGLFIID 134
Query: 84 SEGTRNIIALGTIPLA-AIEKLNKMAVKIQSTPRQTDKNPS 123
+G I + +P+ ++++ ++ Q T + + +P+
Sbjct: 135 DKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVSPA 175
>pdb|1UUL|A Chain A, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
pdb|1UUL|B Chain B, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
pdb|1UUL|C Chain C, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
pdb|1UUL|D Chain D, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
pdb|1UUL|E Chain E, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
pdb|1UUL|F Chain F, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
pdb|1UUL|G Chain G, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
pdb|1UUL|H Chain H, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
pdb|1UUL|I Chain I, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
pdb|1UUL|J Chain J, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
Length = 202
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 26 WDALEWTKIEPVTSSVSHANLDLLLDAERIVVEGYGVVLVNTDEAGTLIVTNFRILFLSE 85
+ L WT IE + N+ +L D + +++ YGV+ +E G +R LF+ +
Sbjct: 82 YSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVL---KEEDGVA----YRGLFIID 134
Query: 86 GTRNI--IALGTIPLA 99
+N+ I + +P+
Sbjct: 135 PKQNLRQITVNDLPVG 150
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/104 (21%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 123 SRRLLQVIGKDMRIVVFGFRPKTKQRRAVYDALVKCAT-----PARIWDIYAFSSGPSK- 176
++RL+ + G + V+ G P +K +R V D+L + P + D+ + + S+
Sbjct: 27 AKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSSISSVFLPPVDLTDLSSSTRIESRI 86
Query: 177 ---CVNTNPKVRLLNEYFRLLGKSSSSATMDMIEEGSFTLSNEL 217
+NP++R + + F G+ ++ +D+ +F ++ E
Sbjct: 87 SLTVTRSNPELRKVFDSFVEGGRLPTALVVDLFGTDAFDVAVEF 130
>pdb|3HKZ|C Chain C, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
pdb|3HKZ|M Chain M, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
Length = 395
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Query: 29 LEWTKIEPVTSSVS--HANLDLLLDAERIVVEGYGVVLVNTDEA-GTLIVTNFRILFLSE 85
LE+TKIE V SS S A++ ++L + +++ GV + + +A G L + +F I +
Sbjct: 144 LEYTKIENVVSSTSIDIASMSIILQLDNEMLKDKGVTVDDVKKAIGRLKLGDFMIEESED 203
Query: 86 GTRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSRRLLQVIGKDMRIVVFG 140
T NI +AA+ KL KI +T + K R ++Q G + I+ G
Sbjct: 204 STLNINFANIDSIAALFKLRD---KILNTKIKGIKGIKRAIVQKKGDEYIILTDG 255
>pdb|2PMZ|C Chain C, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|2PMZ|G Chain G, Archaeal Rna Polymerase From Sulfolobus Solfataricus
Length = 392
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Query: 29 LEWTKIEPVTSSVS--HANLDLLLDAERIVVEGYGVVLVNTDEA-GTLIVTNFRILFLSE 85
LE+TKIE V SS S A++ ++L + +++ GV + + +A G L + +F I +
Sbjct: 141 LEYTKIENVVSSTSIDIASMSIILQLDNEMLKDKGVTVDDVKKAIGRLKLGDFMIEESED 200
Query: 86 GTRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSRRLLQVIGKDMRIVVFG 140
T NI +AA+ KL KI +T + K R ++Q G + I+ G
Sbjct: 201 STLNINFANIDSIAALFKLRD---KILNTKIKGIKGIKRAIVQKKGDEYIILTDG 252
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,895,025
Number of Sequences: 62578
Number of extensions: 374042
Number of successful extensions: 761
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 748
Number of HSP's gapped (non-prelim): 15
length of query: 374
length of database: 14,973,337
effective HSP length: 100
effective length of query: 274
effective length of database: 8,715,537
effective search space: 2388057138
effective search space used: 2388057138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)