Query 047971
Match_columns 374
No_of_seqs 215 out of 646
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 05:02:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047971.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047971hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4471 Phosphatidylinositol 3 100.0 1.5E-79 3.2E-84 617.5 23.9 320 26-369 15-335 (717)
2 KOG1089 Myotubularin-related p 100.0 9.2E-62 2E-66 494.6 19.1 284 57-372 10-307 (573)
3 PF06602 Myotub-related: Myotu 100.0 2.1E-47 4.6E-52 379.3 14.0 183 166-368 1-189 (353)
4 KOG1090 Predicted dual-specifi 100.0 5.6E-30 1.2E-34 268.7 11.2 320 42-369 781-1232(1732)
5 PF11605 Vps36_ESCRT-II: Vacuo 97.9 2.3E-05 5E-10 63.4 6.0 64 43-107 4-73 (89)
6 smart00568 GRAM domain in gluc 97.7 0.00012 2.6E-09 54.4 6.3 58 49-107 2-60 (61)
7 PF02893 GRAM: GRAM domain; I 97.5 0.00014 3E-09 55.5 4.3 58 50-107 9-68 (69)
8 KOG3294 WW domain binding prot 97.0 0.00066 1.4E-08 63.7 4.3 58 48-105 15-83 (261)
9 PF14470 bPH_3: Bacterial PH d 96.6 0.042 9.2E-07 43.8 11.1 94 49-156 1-95 (96)
10 PF08000 bPH_1: Bacterial PH d 96.4 0.042 9.1E-07 47.2 10.8 100 42-158 20-122 (124)
11 PF07289 DUF1448: Protein of u 95.8 0.056 1.2E-06 53.7 9.5 101 43-157 145-249 (339)
12 smart00683 DM16 Repeats in sea 95.6 0.058 1.3E-06 39.8 6.6 51 53-105 1-53 (55)
13 PF07289 DUF1448: Protein of u 94.6 0.25 5.4E-06 49.2 9.9 101 48-157 18-123 (339)
14 PF14844 PH_BEACH: PH domain a 94.0 0.12 2.6E-06 42.5 5.4 76 68-155 16-105 (106)
15 cd01201 Neurobeachin Neurobeac 92.4 0.41 9E-06 40.1 6.2 64 68-142 17-93 (108)
16 cd01244 PH_RasGAP_CG9209 RAS_G 81.9 12 0.00026 30.6 8.6 72 73-157 26-97 (98)
17 PF03517 Voldacs: Regulator of 79.1 6.6 0.00014 34.0 6.5 78 71-159 1-103 (135)
18 PF08567 TFIIH_BTF_p62_N: TFII 77.6 7.6 0.00016 30.6 5.8 62 68-141 11-77 (79)
19 PF14593 PH_3: PH domain; PDB: 75.2 47 0.001 27.6 10.4 89 48-157 6-97 (104)
20 KOG2059 Ras GTPase-activating 70.1 8.3 0.00018 42.0 5.6 101 49-162 558-667 (800)
21 cd00900 PH-like Pleckstrin hom 58.3 73 0.0016 23.5 8.6 78 68-157 19-98 (99)
22 cd01257 PH_IRS Insulin recepto 42.9 77 0.0017 26.0 5.8 53 92-157 48-100 (101)
23 PF04283 CheF-arch: Chemotaxis 36.3 2.1E+02 0.0045 27.0 8.4 34 68-106 25-58 (221)
24 KOG3238 Chloride ion current i 34.2 52 0.0011 30.6 3.8 40 64-103 27-70 (216)
25 KOG2760 Vacuolar sorting prote 32.2 50 0.0011 33.9 3.6 54 51-105 41-102 (432)
26 COG2861 Uncharacterized protei 27.9 1.3E+02 0.0029 28.9 5.5 107 240-374 101-209 (250)
27 PF00169 PH: PH domain; Inter 25.4 2.9E+02 0.0063 20.6 9.7 82 70-158 19-102 (104)
28 cd01252 PH_cytohesin Cytohesin 24.8 4E+02 0.0088 22.1 8.5 20 143-162 97-116 (125)
29 PF04842 DUF639: Plant protein 22.8 84 0.0018 34.5 3.5 40 47-86 201-247 (683)
30 cd01238 PH_Tec Tec pleckstrin 22.4 4.2E+02 0.0092 21.4 8.4 79 73-157 26-105 (106)
31 PRK12791 flbT flagellar biosyn 20.8 1.2E+02 0.0025 26.4 3.4 32 45-78 3-34 (131)
No 1
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-79 Score=617.46 Aligned_cols=320 Identities=39% Similarity=0.568 Sum_probs=273.9
Q ss_pred ccccceeecCCCCCCcccCCcCcccCCceEEEEeccEEEeCCCcceEEEEeCCeEEEEeCCCCCceeeceeeccceeeee
Q 047971 26 WDALEWTKIEPVTSSVSHANLDLLLDAERIVVEGYGVVLVNTDEAGTLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLN 105 (374)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~LLpGE~vv~~~~~V~l~~~~~~GtL~lTnyRLiF~~~~~~~~~~l~~iPL~~Ieki~ 105 (374)
||.+.|++++..++. .....++||||.++.+...|.+++ +..|+|.||||||+|+..++++.+. .+|||+.|++|+
T Consensus 15 ~~s~~~t~~~~~~~~--~~~~~~~L~GE~i~~~~y~c~f~G-~~~g~l~lsNyRl~fks~~t~~~~~-~~VPLg~Ie~ve 90 (717)
T KOG4471|consen 15 NDSFPRTSLDKEDEN--LQVPFPLLPGESIIDEKYICPFLG-AVDGTLALSNYRLYFKSKETDPPFV-LDVPLGVIERVE 90 (717)
T ss_pred hhccCchhccccccc--ccCcccccCCcccccceecccccc-cccceEEeeeeEEEEEeccCCCcee-Eeechhhhhhhh
Confidence 999999999988665 577789999999999998888887 8999999999999999998877544 489999999999
Q ss_pred cccccccCCCCCCCCCCCcccEEEEecCceEEEEeecCCchhHHHHHHHHHhhcCCC-chhcccccccCCCCCCCCCccc
Q 047971 106 KMAVKIQSTPRQTDKNPSRRLLQVIGKDMRIVVFGFRPKTKQRRAVYDALVKCATPA-RIWDIYAFSSGPSKCVNTNPKV 184 (374)
Q Consensus 106 k~~~k~~s~~~~~~~~~~~~~L~I~CKDfR~l~f~F~~~~~~~~~v~~~L~~~~~P~-~~~~lFAF~~~p~~~~~~~p~~ 184 (374)
+++++.+ +.+..+|+|.|||+|+++|+|.+.+...+++|+.|+++++|. ....||||.|......+.....
T Consensus 91 k~~~~~~--------g~ns~~L~i~CKDmr~lR~~fk~~~q~r~~~~e~L~~~~~p~~~~~~LFaF~~~~~~~~ng~e~~ 162 (717)
T KOG4471|consen 91 KRGGATS--------GENSFGLEITCKDMRNLRCAFKQEEQCRRDWFERLNRAAFPPAKSEDLFAFAYHAWFPVNGSENG 162 (717)
T ss_pred hcCcccc--------CCcceeEEEEeccccceeeecCcccccHHHHHHHHHHhcCCcccchhhhhcccHhhcCCCCcccc
Confidence 9864321 112578999999999999999876666669999999999985 5689999999766533211000
Q ss_pred chhhHHHHHhcCCCCCcchhhhhhccCCCCCCCeEEEeccCCCcccccCCCccccccccchHHHHHhhhcccCCCcceEE
Q 047971 185 RLLNEYFRLLGKSSSSATMDMIEEGSFTLSNELWRISDINSTYTMCQSYPFALIVPECIIDQELLQASSFRARYRLPVIS 264 (374)
Q Consensus 185 ~~~~E~~R~~~~~~~~~~~e~~~~g~~~~~~~~WRis~~N~~y~~c~tYP~~lvVP~~i~d~~l~~~a~fRs~~R~Pv~s 264 (374)
.+.++ . ..+.+.|.++++++++.||||.+|++|++|+|||..++||++|+|++|..+|.||+++|+||++
T Consensus 163 ----~~~~l-----~-~P~~~~E~~r~g~~n~~WRIs~iNs~Y~LC~SYP~~l~VP~~isD~eL~~VasFRsr~RlPvls 232 (717)
T KOG4471|consen 163 ----QHWKL-----Y-DPMFKNEYRRQGLPNESWRISKINSNYKLCDSYPAKLVVPKSISDEELLRVASFRSRCRLPVLS 232 (717)
T ss_pred ----ccccc-----c-ChhhHhHHHhcCCChhheeeecccccccccccCccceEeccccCHHHHHHHhhhhhcCccceEE
Confidence 00111 1 1123445555688999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCceEEeccCcccccccCCCChHHHHHHHHHHHhccCCCCCCCcEEEEcCCcchhHHhhccCCCCCcCCCCCCCc
Q 047971 265 WCHSGTGAVLARSSQPLVGLMMNMRSNADEKLVASLCTQLAGGKMSRRKLYIADARPRKNALANGAMGGGSESSSNYFQS 344 (374)
Q Consensus 265 w~h~~~~a~L~RssqP~~G~~~~~r~~~De~ll~~i~~~~~~~~~~~~~l~I~D~R~~~nA~an~a~G~G~E~~~~Y~~~ 344 (374)
|+||++||+|.|||||++|+. ++|+++||+||++|+.+++.. +..+||+|+||||+.||+||+|||||||++++||||
T Consensus 233 w~Hp~sgAvIaRcSQPlVG~~-g~Rn~~DEkll~~i~~a~A~~-~e~~KL~I~DARp~~nAvANkAkGGG~Es~~~Y~na 310 (717)
T KOG4471|consen 233 WRHPESGAVIARCSQPLVGWS-GKRNKDDEKLLQAIADANAQD-GERRKLLIVDARPYTNAVANKAKGGGYESEEAYPNA 310 (717)
T ss_pred EEcCCCCceEEecCCcccchh-cccccchHHHHHHHHHhcccc-cccceEEEEecccchhhhhccccCCCccChhccccc
Confidence 999999999999999999997 699999999999999877542 236799999999999999999999999999999999
Q ss_pred eEEEcCCCChHHHHHHHHHHHHHHh
Q 047971 345 EIVFFGIDNIHAMRESFARLRDYLD 369 (374)
Q Consensus 345 ~~~f~~I~NIH~mr~S~~kl~~~~~ 369 (374)
+++||||+|||+||+||+||+++|.
T Consensus 311 Ei~Fl~i~NIH~mR~s~~~~k~~~~ 335 (717)
T KOG4471|consen 311 EIVFLGIHNIHVMRESLRKLKEICY 335 (717)
T ss_pred eEEEeecchhHHHHHHHHhHHHhhc
Confidence 9999999999999999999999984
No 2
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=100.00 E-value=9.2e-62 Score=494.56 Aligned_cols=284 Identities=32% Similarity=0.511 Sum_probs=238.2
Q ss_pred EEeccEEEeCC------CcceEEEEeCCeEEEEeCC----CCCceeeceeeccceeeeecccccccCCCCCCCCCCCccc
Q 047971 57 VEGYGVVLVNT------DEAGTLIVTNFRILFLSEG----TRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSRRL 126 (374)
Q Consensus 57 ~~~~~V~l~~~------~~~GtL~lTnyRLiF~~~~----~~~~~~l~~iPL~~Ieki~k~~~k~~s~~~~~~~~~~~~~ 126 (374)
.+...|.+... ...|||++|.+|+||+... ..+++++.+ ..|+.+++..... +. ...+..
T Consensus 10 ~kv~~v~l~~~~~~~~~~~~Gtl~lt~~hli~~~~~~~~~~~~e~w~l~---~~i~~v~k~~~~~-----~~--~~~g~~ 79 (573)
T KOG1089|consen 10 PKVHNVELHDRENPVTLALVGTLLLTTHHLIFKILQCRQANSKELWLLH---DNIDSVEKDPSTF-----KN--STSGGP 79 (573)
T ss_pred ceecceeEecCCCCccccccceEEEeeceeeeeecccccccchhhcccc---chHhhhccCccee-----ec--cccCCc
Confidence 34455555422 4799999999999999655 556665534 4444444332100 00 112456
Q ss_pred EEEEecCceEEEEeecCCchhHHHHHHHHHhhcCCCchhcccccccCCCCCC----CCCcccchhhHHHHHhcCCCCCcc
Q 047971 127 LQVIGKDMRIVVFGFRPKTKQRRAVYDALVKCATPARIWDIYAFSSGPSKCV----NTNPKVRLLNEYFRLLGKSSSSAT 202 (374)
Q Consensus 127 L~I~CKDfR~l~f~F~~~~~~~~~v~~~L~~~~~P~~~~~lFAF~~~p~~~~----~~~p~~~~~~E~~R~~~~~~~~~~ 202 (374)
|.|+|||||++.|.+ +...+|++|+++|.+++.+.++..+|||.|.|.... ..+..+++++||.|+.-
T Consensus 80 i~l~CK~~~~~~~~i-~~~~e~~~v~~s~~~ls~~~~~~~ly~f~y~~~~~~~~~~~gw~~fd~~~ef~r~~~------- 151 (573)
T KOG1089|consen 80 ITLKCKDFRVISFLI-PDDLECRDVYSSIENLSNIDSILQLYAFFYAPNFQNLEDPSGWKMFDPESEFDRMGI------- 151 (573)
T ss_pred hhhhhhcceEEEEec-cchHHHHHHHHHHHHhcccCccccccccccCCcccccccccCceecchHhHHHHHhc-------
Confidence 899999999999998 456799999999999999999999999999987632 25678888999998721
Q ss_pred hhhhhhccCCCCCCCeEEEeccCCCcccccCCCccccccccchHHHHHhhhcccCCCcceEEeeecCCCceEEeccCccc
Q 047971 203 MDMIEEGSFTLSNELWRISDINSTYTMCQSYPFALIVPECIIDQELLQASSFRARYRLPVISWCHSGTGAVLARSSQPLV 282 (374)
Q Consensus 203 ~e~~~~g~~~~~~~~WRis~~N~~y~~c~tYP~~lvVP~~i~d~~l~~~a~fRs~~R~Pv~sw~h~~~~a~L~RssqP~~ 282 (374)
+ .++..||+|++|++|++|+|||..++||++++|+.|+..|+||++||||||+|.|..|+++|+|||||++
T Consensus 152 ----~-----~~~~~w~~ssvNe~y~vC~tyP~~l~VPksitd~~l~~~~~fRs~gR~Pvl~y~h~~n~aal~R~SqPL~ 222 (573)
T KOG1089|consen 152 ----R-----KGNSHWRISSVNENYEVCPTYPEKLIVPKSITDEDLKKSAKFRSGGRFPVLSYSHKENGAALMRSSQPLS 222 (573)
T ss_pred ----c-----CCCCCceEEecCCCeeeccCCCceeEecCCCchHhhhccchhccCCccceEEEEeccCCcceeeecCCCc
Confidence 0 1678999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred ccccCCCChHHHHHHHHHHHhccCCCCCCCcEEEEcCCcchhHHhhccCCCCCcCCCCCCCceEEEcCCCChHHHHHHHH
Q 047971 283 GLMMNMRSNADEKLVASLCTQLAGGKMSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRESFA 362 (374)
Q Consensus 283 G~~~~~r~~~De~ll~~i~~~~~~~~~~~~~l~I~D~R~~~nA~an~a~G~G~E~~~~Y~~~~~~f~~I~NIH~mr~S~~ 362 (374)
|+. .+||.+||+||++|.++.+. ....||+||||++|||||+|+|||||++++|+|+++.|++|||||+||+||+
T Consensus 223 g~~-~~Rc~~DE~il~ai~k~~~~----~~~~yivDtRp~~nA~an~A~g~g~En~~~Y~~~~~~f~~i~nIh~v~~s~~ 297 (573)
T KOG1089|consen 223 GFI-AKRCREDEKILEAILKANPN----SKRGYIVDTRPRTNAMANRAKGGGYENEDNYSQWKFLFLGIENIHVVRSSLQ 297 (573)
T ss_pred ccc-cccchHHHHHHHHHHhhCcC----ccceeEEeccchhhHHHHHhhcCCCcchhhHHHHHHHhcCcchHHHHHHHHH
Confidence 986 68999999999999876532 6789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcC
Q 047971 363 RLRDYLDTHG 372 (374)
Q Consensus 363 kl~~~~~~~g 372 (374)
||+++|...+
T Consensus 298 kl~e~c~~~~ 307 (573)
T KOG1089|consen 298 KLLEVCNNFL 307 (573)
T ss_pred HHHHHHhccC
Confidence 9999998643
No 3
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=100.00 E-value=2.1e-47 Score=379.25 Aligned_cols=183 Identities=49% Similarity=0.775 Sum_probs=128.5
Q ss_pred cccccccCCCCCCC-----CCcccchhhHHHHHhcCCCCCcchhhhhhccCCCCCCC-eEEEeccCCCcccccCCCcccc
Q 047971 166 DIYAFSSGPSKCVN-----TNPKVRLLNEYFRLLGKSSSSATMDMIEEGSFTLSNEL-WRISDINSTYTMCQSYPFALIV 239 (374)
Q Consensus 166 ~lFAF~~~p~~~~~-----~~p~~~~~~E~~R~~~~~~~~~~~e~~~~g~~~~~~~~-WRis~~N~~y~~c~tYP~~lvV 239 (374)
+||||.|.+..... .+..++..+||.|+ +++... |||+.+|++|++|+|||..+||
T Consensus 1 ~LFAF~y~~~~~~~~~~~~~~~~~d~~~E~~R~------------------g~~~~~~Wri~~~N~~y~~c~tYP~~lvV 62 (353)
T PF06602_consen 1 DLFAFSYQPPKSELKSKSNGWKIYDWEREFERL------------------GLPSDSSWRISDINSNYELCPTYPSLLVV 62 (353)
T ss_dssp TSGGGT---S-SSHHHHH-HHCT--HHHHHHHT------------------T-SCSS-EEEEGCCTTSSS-TTS-SSEEE
T ss_pred CcccccCCCCCCcccccCCCccccCHHHHHHHh------------------CCCCCCCeeEEEEcCCCCccccccceEEE
Confidence 58999999887542 23445666777775 233333 9999999999999999999999
Q ss_pred ccccchHHHHHhhhcccCCCcceEEeeecCCCceEEeccCcccccccCCCChHHHHHHHHHHHhccCCCCCCCcEEEEcC
Q 047971 240 PECIIDQELLQASSFRARYRLPVISWCHSGTGAVLARSSQPLVGLMMNMRSNADEKLVASLCTQLAGGKMSRRKLYIADA 319 (374)
Q Consensus 240 P~~i~d~~l~~~a~fRs~~R~Pv~sw~h~~~~a~L~RssqP~~G~~~~~r~~~De~ll~~i~~~~~~~~~~~~~l~I~D~ 319 (374)
|++++|++|.++|+||+++|||||+|+||.||++|+|||||++|+. +.||.+||+||.++..+. ...+..++++|+|+
T Consensus 63 P~~i~D~~l~~~a~~r~~~R~Pv~~W~~~~~~a~L~Rssqp~~g~~-~~r~~~De~ll~~~i~~~-~~~~~~~~~~i~D~ 140 (353)
T PF06602_consen 63 PSSISDEELKKSAKFRSKGRFPVLSWRHPENGAVLLRSSQPLVGLS-NSRSKEDEKLLQAAISSS-KSNPSKSKLVIVDA 140 (353)
T ss_dssp ETTS-HHHHHHHHHHBGGG---EEEEE-TTT--EEEEEE-B--TTT-T---HHHHHHH-HHH--H-HHSTT-SSEEEEE-
T ss_pred EEEecHHHHHHhhhhccCCccceEEEeecCCCeEEEEecccccccc-ccCchhhHHHHHHHHhhc-ccccccCceEEEcc
Confidence 9999999999999999999999999999999999999999999995 789999999995543100 01235789999999
Q ss_pred CcchhHHhhccCCCCCcCCCCCCCceEEEcCCCChHHHHHHHHHHHHHH
Q 047971 320 RPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRESFARLRDYL 368 (374)
Q Consensus 320 R~~~nA~an~a~G~G~E~~~~Y~~~~~~f~~I~NIH~mr~S~~kl~~~~ 368 (374)
||++||+||+++|||+|++++|++|+++|++|+|||+||+||.||+++|
T Consensus 141 R~~~~a~~n~~~G~G~E~~~~Y~~~~i~fl~i~nih~vr~s~~kl~~~~ 189 (353)
T PF06602_consen 141 RPKLNALANRAKGGGYENESNYPNCEIIFLNIPNIHSVRDSFQKLRELC 189 (353)
T ss_dssp SSCHHHHHHHHTT-S---TTTSTTEEEEE-----HHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhccCCccccccccceEEeeecCcHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999
No 4
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=99.96 E-value=5.6e-30 Score=268.72 Aligned_cols=320 Identities=24% Similarity=0.270 Sum_probs=220.9
Q ss_pred ccCCcCcccCCceEEEEeccEEEeCC---------------CcceEEEEeCCeEEEEeCCCCCc----eeeceeecccee
Q 047971 42 SHANLDLLLDAERIVVEGYGVVLVNT---------------DEAGTLIVTNFRILFLSEGTRNI----IALGTIPLAAIE 102 (374)
Q Consensus 42 ~~~~~~~LLpGE~vv~~~~~V~l~~~---------------~~~GtL~lTnyRLiF~~~~~~~~----~~l~~iPL~~Ie 102 (374)
+-...|+|||||.+|.++.+|+|+++ +++|.|||||||+||++.+.|.+ +.++++||.+++
T Consensus 781 Kp~~~P~LlpGE~lv~D~lrcyLlpdgrE~e~~~~~~~~LlPAeGalFLTnYRVIFkG~p~Dpl~~eqviVrtfPlasl~ 860 (1732)
T KOG1090|consen 781 KPNFDPVLLPGEFLVSDPLRCYLLPDGRESEMSLNRLENLLPAEGALFLTNYRVIFKGKPVDPLATEQVIVRTFPLASLE 860 (1732)
T ss_pred CCCCCccccCchhhccCCceEEEecCcccccccccccccccccCcceEEeeeEEEecCCCCCcccccceEEEEeehhhhh
Confidence 34567899999999999999999853 36999999999999999988765 456899999999
Q ss_pred eeecccccccCCCCCCCCCCCcccEEEEecCceEEEEeecCC-chhHHHHH-HHHHhhcCCCchhcccccccCCCCC--C
Q 047971 103 KLNKMAVKIQSTPRQTDKNPSRRLLQVIGKDMRIVVFGFRPK-TKQRRAVY-DALVKCATPARIWDIYAFSSGPSKC--V 178 (374)
Q Consensus 103 ki~k~~~k~~s~~~~~~~~~~~~~L~I~CKDfR~l~f~F~~~-~~~~~~v~-~~L~~~~~P~~~~~lFAF~~~p~~~--~ 178 (374)
|.+|+.+++ ..+.|+. ..+|+|+.--|+.++++|+++ ..+..++| ..|.++.+|-+....|||.+..... +
T Consensus 861 keKkisv~~-~~~dQll----~~Glqlrs~~fql~k~Afd~ev~~d~~E~frk~l~K~r~p~d~~~~faF~~y~Tk~k~~ 935 (1732)
T KOG1090|consen 861 KEKKISVKK-LIPDQLL----EKGLQLRSIIFQLSKCAFDIEVAFDEDEIFRKALEKFREPIDTNSHFAFAFYNTKKKMK 935 (1732)
T ss_pred hhhhhhhhc-cChHHHH----HhcchhhhHHHHHHHhhcCccccccHHHHHHHHHHHhcCCccccceeeeeeccccccch
Confidence 999988754 3344433 568999999999999999876 45667888 6789999998888889997643221 0
Q ss_pred ---CCCcccchhh-------------HHHHHhcCCCCCcch-------hhhhh--------------ccCCC--CCCCeE
Q 047971 179 ---NTNPKVRLLN-------------EYFRLLGKSSSSATM-------DMIEE--------------GSFTL--SNELWR 219 (374)
Q Consensus 179 ---~~~p~~~~~~-------------E~~R~~~~~~~~~~~-------e~~~~--------------g~~~~--~~~~WR 219 (374)
+....+-+.+ .+.+.........+. |.++. .+++. .-..||
T Consensus 936 ~l~~~s~k~l~~nakk~g~t~rKk~td~~~~~~~~~~~~si~de~~~~eEle~~~~sa~~~~~~~d~~rl~ers~i~d~~ 1015 (1732)
T KOG1090|consen 936 VLENGSHKFLTLNAKKRGQTFRKKKTDPSWIHRGQSPPESIQDEISVSEELELTPKSALKPSDVMDYSRLGERSKIVDLR 1015 (1732)
T ss_pred hhhccchhhhhhhhhhhhhhhhcccCCcchhhcCCCCCccccccchhhhhhccCccccCCccccccHHHHHHHHHHHHHH
Confidence 0000110011 000000000000000 00000 00000 013588
Q ss_pred EEeccCCCcccccCCCccccccccchHHHHHhhhcccCCCcceEEeeecCCCceEEeccCccc----cccc---------
Q 047971 220 ISDINSTYTMCQSYPFALIVPECIIDQELLQASSFRARYRLPVISWCHSGTGAVLARSSQPLV----GLMM--------- 286 (374)
Q Consensus 220 is~~N~~y~~c~tYP~~lvVP~~i~d~~l~~~a~fRs~~R~Pv~sw~h~~~~a~L~RssqP~~----G~~~--------- 286 (374)
.+..|.+|.+|+|||..+|||..+.|..|.+++++...+||||++|+| +|||.|+|++||.. |...
T Consensus 1016 rlg~N~~YaiCrSYPg~~IvP~~~~d~al~~v~rcf~~~R~Pvv~Wr~-~ngAlLvR~g~~~sk~vvg~lK~~~~~s~na 1094 (1732)
T KOG1090|consen 1016 RLGSNLDYAICRSYPGLLIVPQEVQDNALQKVSRCFVQNRLPVVVWRN-ENGALLVRAGAFTSKDVVGKLKAQNAPSPNA 1094 (1732)
T ss_pred HhccCccchhhcCCCceEeccccccHHHHHHHHHHHhcccccceeeec-CCcceEEecCCCccccHHhhhccccCCCCCc
Confidence 888899999999999999999999999999999977799999999999 69999999999863 2210
Q ss_pred ---CCCChHHHHHHHHHHHhccC------C----------CCC--------------CCcEEEE----------------
Q 047971 287 ---NMRSNADEKLVASLCTQLAG------G----------KMS--------------RRKLYIA---------------- 317 (374)
Q Consensus 287 ---~~r~~~De~ll~~i~~~~~~------~----------~~~--------------~~~l~I~---------------- 317 (374)
...+.+.|++|++....++. . .++ ....-+-
T Consensus 1095 s~~~ss~~eqekyl~a~vsSmp~~~~~sg~n~~~~s~~~hm~s~~k~~~s~~~~rs~~l~td~~d~~~~~~~g~~~t~ng 1174 (1732)
T KOG1090|consen 1095 SQLDSSSLEQEKYLQAVVSSMPEYADASGRNALIGSSSAHMGSHAKLSNSSQRARSYALPTDYADKFSTFNDGCTLTQNG 1174 (1732)
T ss_pred ccccccchhHHHHHHHHHhcChhhhhhhccchhhcchhhhcccccccccchhhhhhccCCcccccccccccCCCcccccC
Confidence 12445788999887543310 0 000 0000111
Q ss_pred -----cCCc---chhHHhhccCCCCCcCCCCCCCceEEEcCCCChHHHHHHHHHHHHHHh
Q 047971 318 -----DARP---RKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRESFARLRDYLD 369 (374)
Q Consensus 318 -----D~R~---~~nA~an~a~G~G~E~~~~Y~~~~~~f~~I~NIH~mr~S~~kl~~~~~ 369 (374)
-.|+ .+-++++++.|+ -+.+--.||+++-.....+..+|-||+||+.+|-
T Consensus 1175 ~p~~p~~r~~r~aLYiLgeK~q~k--~~~~id~~ae~IpV~~~e~rq~r~sfkkl~kaC~ 1232 (1732)
T KOG1090|consen 1175 APPFPTTRIRRKALYILGEKAQLK--VRIDIDQQAELIPVEVFEERQVRASFKKLLKACV 1232 (1732)
T ss_pred CCCCCCcchhhhhhhhccchhccc--ccCChhhccceeeeechhHHHHHHHHHHHHHHhC
Confidence 1133 233446666666 4555667899999999999999999999999984
No 5
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=97.92 E-value=2.3e-05 Score=63.44 Aligned_cols=64 Identities=22% Similarity=0.362 Sum_probs=43.4
Q ss_pred cCCcCcccCCceEEEEeccEEEeCC------CcceEEEEeCCeEEEEeCCCCCceeeceeeccceeeeecc
Q 047971 43 HANLDLLLDAERIVVEGYGVVLVNT------DEAGTLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKM 107 (374)
Q Consensus 43 ~~~~~~LLpGE~vv~~~~~V~l~~~------~~~GtL~lTnyRLiF~~~~~~~~~~l~~iPL~~Ieki~k~ 107 (374)
..++|.|.|+|.++....+|-+..+ -..|+|+||+|||+|..........+ .+||..|.+++..
T Consensus 4 ~s~~p~L~~~E~~~~~q~~V~LYdG~~K~~~~q~G~l~LTsHRliw~d~~~~~~~s~-~l~L~~i~~~e~~ 73 (89)
T PF11605_consen 4 SSGRPVLEPNETIVYQQDGVGLYDGDQKTPNFQNGRLYLTSHRLIWVDDSDPSKHSI-ALPLSLISHIEYS 73 (89)
T ss_dssp TCS-C---TT--EEEEEEEEEEEETTECSTT-SCEEEEEESSEEEEEESSGHCHH-E-EEEGGGEEEEEEE
T ss_pred cccCcccCCCceEEEEecCeeeEcCCccCccccCCEEEEEeeEEEEEcCCCCceeEE-EEEchHeEEEEEE
Confidence 3578999999999999999998753 24899999999999996542211122 6899999998654
No 6
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=97.69 E-value=0.00012 Score=54.42 Aligned_cols=58 Identities=28% Similarity=0.502 Sum_probs=42.9
Q ss_pred ccCCceEEEEeccEEEeC-CCcceEEEEeCCeEEEEeCCCCCceeeceeeccceeeeecc
Q 047971 49 LLDAERIVVEGYGVVLVN-TDEAGTLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKM 107 (374)
Q Consensus 49 LLpGE~vv~~~~~V~l~~-~~~~GtL~lTnyRLiF~~~~~~~~~~l~~iPL~~Ieki~k~ 107 (374)
|.++|.++.+ ..+.+.. ....|+||||++||.|.+...+.......||+..|.+++|.
T Consensus 2 l~~~E~l~~~-~~C~l~~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k~ 60 (61)
T smart00568 2 LPEEEKLIAD-YSCYLSRDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIEKS 60 (61)
T ss_pred cCCCcEEEEE-EEeEECCCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEEC
Confidence 5677777765 6666653 46799999999999999865443331337899999999864
No 7
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=97.50 E-value=0.00014 Score=55.49 Aligned_cols=58 Identities=28% Similarity=0.356 Sum_probs=35.9
Q ss_pred cCCceEEEEeccEEEeC--CCcceEEEEeCCeEEEEeCCCCCceeeceeeccceeeeecc
Q 047971 50 LDAERIVVEGYGVVLVN--TDEAGTLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKM 107 (374)
Q Consensus 50 LpGE~vv~~~~~V~l~~--~~~~GtL~lTnyRLiF~~~~~~~~~~l~~iPL~~Ieki~k~ 107 (374)
||.++.+.+...+.+.. ....|+||||++||.|.+...........||+..|.+|++.
T Consensus 9 lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k~ 68 (69)
T PF02893_consen 9 LPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEKE 68 (69)
T ss_dssp --TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEEE
T ss_pred CCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEEEe
Confidence 55544444445555543 35799999999999999954433321236899999999863
No 8
>KOG3294 consensus WW domain binding protein WBP-2, contains GRAM domain [Signal transduction mechanisms]
Probab=97.04 E-value=0.00066 Score=63.72 Aligned_cols=58 Identities=28% Similarity=0.451 Sum_probs=42.9
Q ss_pred cccCCceEEEEeccEEEe----C-------CCcceEEEEeCCeEEEEeCCCCCceeeceeeccceeeee
Q 047971 48 LLLDAERIVVEGYGVVLV----N-------TDEAGTLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLN 105 (374)
Q Consensus 48 ~LLpGE~vv~~~~~V~l~----~-------~~~~GtL~lTnyRLiF~~~~~~~~~~l~~iPL~~Ieki~ 105 (374)
.++.||.++.-..+|.+- + +...||||||||||||.+...+..+.-..+|+.++..++
T Consensus 15 l~~n~E~i~~~~dgVeltf~~~~~~~~~~~g~kkGtlyLTs~RiIFis~~~~D~fksF~MPf~~mkd~k 83 (261)
T KOG3294|consen 15 LLYNGESILLVYDGVELTFDKMPNVSEAFKGTKKGTLYLTSHRIIFISSKPKDAFKSFMMPFNLMKDVK 83 (261)
T ss_pred EecCCcEEEEeeCCeEEEeeccCCCccccccceeeeEEeecceEEEecCCCCcchhhhcchhhhhhhce
Confidence 566999999888899882 1 245899999999999998764333333467887775543
No 9
>PF14470 bPH_3: Bacterial PH domain
Probab=96.58 E-value=0.042 Score=43.81 Aligned_cols=94 Identities=18% Similarity=0.183 Sum_probs=61.0
Q ss_pred ccCCceEEEEeccEEE-eCCCcceEEEEeCCeEEEEeCCCCCceeeceeeccceeeeecccccccCCCCCCCCCCCcccE
Q 047971 49 LLDAERIVVEGYGVVL-VNTDEAGTLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSRRLL 127 (374)
Q Consensus 49 LLpGE~vv~~~~~V~l-~~~~~~GtL~lTnyRLiF~~~~~~~~~~l~~iPL~~Ieki~k~~~k~~s~~~~~~~~~~~~~L 127 (374)
|.+||.|.+...+..- ......|.|++||=||+|.....-......++|+..|.+++.... . . ...|
T Consensus 1 L~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g--------~---~-~~~i 68 (96)
T PF14470_consen 1 LKEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKG--------I---L-GGKI 68 (96)
T ss_pred CcCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEcc--------c---c-ccEE
Confidence 5689999877655432 124668999999999999976421112335899999999874310 0 0 2458
Q ss_pred EEEecCceEEEEeecCCchhHHHHHHHHH
Q 047971 128 QVIGKDMRIVVFGFRPKTKQRRAVYDALV 156 (374)
Q Consensus 128 ~I~CKDfR~l~f~F~~~~~~~~~v~~~L~ 156 (374)
.|.+ +-..++|.-.+ ..+...+++.|.
T Consensus 69 ~i~~-~~~~~~i~~i~-k~~~~~~~~~i~ 95 (96)
T PF14470_consen 69 TIET-NGEKIKIDNIQ-KGDVKEFYEYIK 95 (96)
T ss_pred EEEE-CCEEEEEEEcC-HHHHHHHHHHHh
Confidence 8888 77777776322 345556665553
No 10
>PF08000 bPH_1: Bacterial PH domain; InterPro: IPR012544 This family contains many bacterial hypothetical proteins.; PDB: 3DCX_E 3HSA_C 3B77_D.
Probab=96.45 E-value=0.042 Score=47.22 Aligned_cols=100 Identities=22% Similarity=0.298 Sum_probs=64.7
Q ss_pred ccCCcCcccCCceEEEEeccEEEeCCCcceEEEEeCCeEEEEeC-C-CCCceeeceeeccceeeeecccccccCCCCCCC
Q 047971 42 SHANLDLLLDAERIVVEGYGVVLVNTDEAGTLIVTNFRILFLSE-G-TRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTD 119 (374)
Q Consensus 42 ~~~~~~~LLpGE~vv~~~~~V~l~~~~~~GtL~lTnyRLiF~~~-~-~~~~~~l~~iPL~~Ieki~k~~~k~~s~~~~~~ 119 (374)
.+...+.|+|||+++.-=. .....++.||.|||++-. + +.+...+.++|+..|..+.--+ .+..|
T Consensus 20 ~~~~~~~L~~gE~I~~ayk-------~iRD~~vFTnkRlI~vD~QG~TGkK~~~~siPY~~I~~~siET------AG~~D 86 (124)
T PF08000_consen 20 QKEYEPLLLDGEEIEAAYK-------LIRDEIVFTNKRLILVDKQGITGKKVEYKSIPYSSITHFSIET------AGTFD 86 (124)
T ss_dssp HHHHGGGSSTT--EEEEEE-------ESSEEEEEESSEEEEEEEESSSSSEEEEEEEEGGGEEEEEEEE------CSSTT
T ss_pred HHHHHHhcCCCCeeeeeeh-------hhceeEEEecChheEEecccCccceEEEEEEehhhccEEEEEe------CCccc
Confidence 3556788999999984311 127899999999999962 2 3445566799999999875322 11122
Q ss_pred CCCCcccEEEEecCce-EEEEeecCCchhHHHHHHHHHhh
Q 047971 120 KNPSRRLLQVIGKDMR-IVVFGFRPKTKQRRAVYDALVKC 158 (374)
Q Consensus 120 ~~~~~~~L~I~CKDfR-~l~f~F~~~~~~~~~v~~~L~~~ 158 (374)
- ...|.|.-..-. .+.+.|. ...+..+++..|.++
T Consensus 87 l---D~Elki~i~~~~~~i~~~f~-k~~di~~i~k~L~~~ 122 (124)
T PF08000_consen 87 L---DSELKIWISGQGFPIEFEFK-KKTDIYEIYKALAEY 122 (124)
T ss_dssp S---EEEEEEEETTESSEEEEEEG-TTSHHHHHHHHHHHH
T ss_pred C---cccEEEEECCCcEEEEEecC-CCCCHHHHHHHHHHH
Confidence 1 234777666654 4567784 455678888888764
No 11
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=95.80 E-value=0.056 Score=53.68 Aligned_cols=101 Identities=22% Similarity=0.309 Sum_probs=66.8
Q ss_pred cCCcCcccCCceEEEEeccEEEeC--CCcceEEEEeCCeEEEEeCCCCCceeeceeeccceeeeecccccccCCCCCCCC
Q 047971 43 HANLDLLLDAERIVVEGYGVVLVN--TDEAGTLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTDK 120 (374)
Q Consensus 43 ~~~~~~LLpGE~vv~~~~~V~l~~--~~~~GtL~lTnyRLiF~~~~~~~~~~l~~iPL~~Ieki~k~~~k~~s~~~~~~~ 120 (374)
+.....|||+|+|...-.+|--+. .+.-|++++||-||++-+.-++ .+.+ +||+..|..+..... |
T Consensus 145 ~~~~L~lLp~E~v~~~~~gVwnls~dqGnLGtfivTNvRiVW~A~~ne-~fNV-SiPylqi~~i~ir~S----------K 212 (339)
T PF07289_consen 145 RDGQLKLLPQEQVYSRVNGVWNLSSDQGNLGTFIVTNVRIVWFADMNE-SFNV-SIPYLQIKSIRIRDS----------K 212 (339)
T ss_pred eCCeEeeCCccEEeeccCCEEEcccCCCceeEEEEeeeEEEEEccCCc-cccc-cchHhhheeeeeecc----------c
Confidence 467789999999999999998763 4667999999999999986543 3343 789999988754221 2
Q ss_pred CCCcccEEEE-ecCceEEEEeecCC-chhHHHHHHHHHh
Q 047971 121 NPSRRLLQVI-GKDMRIVVFGFRPK-TKQRRAVYDALVK 157 (374)
Q Consensus 121 ~~~~~~L~I~-CKDfR~l~f~F~~~-~~~~~~v~~~L~~ 157 (374)
++ ..|.|. .....-..++|.-+ .+..+++|+.+..
T Consensus 213 fG--~aLVieT~~~sGgYVLGFRvDP~ErL~~l~KEi~s 249 (339)
T PF07289_consen 213 FG--PALVIETSESSGGYVLGFRVDPEERLQELFKEIQS 249 (339)
T ss_pred cc--eEEEEEEeccCCcEEEEEEcCHHHHHHHHHHHHHH
Confidence 32 122222 22333445666432 3456677766654
No 12
>smart00683 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc.
Probab=95.59 E-value=0.058 Score=39.77 Aligned_cols=51 Identities=24% Similarity=0.412 Sum_probs=36.9
Q ss_pred ceEEEEeccEEEe--CCCcceEEEEeCCeEEEEeCCCCCceeeceeeccceeeee
Q 047971 53 ERIVVEGYGVVLV--NTDEAGTLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLN 105 (374)
Q Consensus 53 E~vv~~~~~V~l~--~~~~~GtL~lTnyRLiF~~~~~~~~~~l~~iPL~~Ieki~ 105 (374)
|.++..-.+|.=+ +.+..|+|++||-|+++.+... +.+.+ +||+.+|..+.
T Consensus 1 E~v~~~~~~Ved~kgn~G~~G~l~VTNlRiiW~s~~~-~~~Nl-SIgy~~i~~i~ 53 (55)
T smart00683 1 ERVLTRINGVEDTKGNNGDLGVFFVTNLRLVWHSDTN-PRFNI-SVGYLQITNVR 53 (55)
T ss_pred CEEEeeecCeEecCCCCCCeeEEEEEeeEEEEEeCCC-CceEE-EEcceeEEEEE
Confidence 5566555666644 3466899999999999998654 34454 78999887763
No 13
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=94.61 E-value=0.25 Score=49.19 Aligned_cols=101 Identities=22% Similarity=0.254 Sum_probs=63.8
Q ss_pred cccCCceEEEEeccEEEe--CCCcceEEEEeCCeEEEEeCCCCCceeeceeeccceeeeecccccccCCCCCCCCCCCcc
Q 047971 48 LLLDAERIVVEGYGVVLV--NTDEAGTLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSRR 125 (374)
Q Consensus 48 ~LLpGE~vv~~~~~V~l~--~~~~~GtL~lTnyRLiF~~~~~~~~~~l~~iPL~~Ieki~k~~~k~~s~~~~~~~~~~~~ 125 (374)
.|-+||.++..-..|.=. |.+..|+|++||-||++.+..... +.+ +|-+.+|..+..... .| ...+ ..+
T Consensus 18 ~lr~GE~~i~~~~~VEDtKGN~G~~G~l~vTNLR~iW~s~~~~r-~Nl-SIG~~~i~~i~~~~~--~s----klrg-~te 88 (339)
T PF07289_consen 18 KLRPGEFIIDRLDPVEDTKGNNGDRGRLVVTNLRLIWHSLKRPR-INL-SIGYNCITNISTKTV--NS----KLRG-NTE 88 (339)
T ss_pred ccccceEEEEeeeceeeccCCCCCeeEEEEEeeeeEEeccCCCc-eeE-EeeceeEEEEEEEEe--ec----cccC-cee
Confidence 455999999777777643 457799999999999999875433 444 778888888763221 11 1111 256
Q ss_pred cEEEEecCc-eEEEEeecCCchhH--HHHHHHHHh
Q 047971 126 LLQVIGKDM-RIVVFGFRPKTKQR--RAVYDALVK 157 (374)
Q Consensus 126 ~L~I~CKDf-R~l~f~F~~~~~~~--~~v~~~L~~ 157 (374)
.|.|.+|-. .-+.|-|.+-.+.. +.+|.++..
T Consensus 89 aL~i~~k~~~~rfEFiFt~~~~~~~~~~lf~~v~~ 123 (339)
T PF07289_consen 89 ALYILAKFNNTRFEFIFTNLSPNSPRQRLFTSVQA 123 (339)
T ss_pred EEEEeeecCCceEEEEeccCCCCCccchHHHHHHH
Confidence 788888843 23445554322222 367766654
No 14
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=93.99 E-value=0.12 Score=42.53 Aligned_cols=76 Identities=28% Similarity=0.394 Sum_probs=48.0
Q ss_pred CcceEEEEeCCeEEEEeCCCC--------------CceeeceeeccceeeeecccccccCCCCCCCCCCCcccEEEEecC
Q 047971 68 DEAGTLIVTNFRILFLSEGTR--------------NIIALGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSRRLLQVIGKD 133 (374)
Q Consensus 68 ~~~GtL~lTnyRLiF~~~~~~--------------~~~~l~~iPL~~Ieki~k~~~k~~s~~~~~~~~~~~~~L~I~CKD 133 (374)
..+|+|.||+-+|+|.+.+.. ..-....+|+..|..|.+.. -. + ...+|+|..+|
T Consensus 16 ~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RR---yl----l----r~~AlEiF~~d 84 (106)
T PF14844_consen 16 SIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRR---YL----L----RDTALEIFFSD 84 (106)
T ss_dssp EEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEE---ET----T----EEEEEEEEETT
T ss_pred eEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHH---hc----C----cceEEEEEEcC
Confidence 459999999999999986111 01112367888888876532 11 1 13579999999
Q ss_pred ceEEEEeecCCchhHHHHHHHH
Q 047971 134 MRIVVFGFRPKTKQRRAVYDAL 155 (374)
Q Consensus 134 fR~l~f~F~~~~~~~~~v~~~L 155 (374)
.+.+=|.|. +..++.++++.|
T Consensus 85 g~s~f~~F~-~~~~R~~v~~~l 105 (106)
T PF14844_consen 85 GRSYFFNFE-SKKERDEVYNKL 105 (106)
T ss_dssp S-EEEEE-S-SHHHHHHHHCCS
T ss_pred CcEEEEEcC-CHHHHHHHHHhh
Confidence 999999994 455666776543
No 15
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=92.41 E-value=0.41 Score=40.10 Aligned_cols=64 Identities=19% Similarity=0.241 Sum_probs=41.8
Q ss_pred CcceEEEEeCCeEEEEeCCCCCc-------ee------eceeeccceeeeecccccccCCCCCCCCCCCcccEEEEecCc
Q 047971 68 DEAGTLIVTNFRILFLSEGTRNI-------IA------LGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSRRLLQVIGKDM 134 (374)
Q Consensus 68 ~~~GtL~lTnyRLiF~~~~~~~~-------~~------l~~iPL~~Ieki~k~~~k~~s~~~~~~~~~~~~~L~I~CKDf 134 (374)
-..|+|.||+.+|+|..++.++. +. ....|+..|..|.+. + -+.. ..+|+|.|.|-
T Consensus 17 vvpG~l~ITt~~lyF~~d~~~~~~~~~~~~vl~~~~~~~~~w~ls~Ir~v~~R---R-----ylLr---~~alEiF~~d~ 85 (108)
T cd01201 17 VVKGTLSITTTEIFFEVDERDSQFKKIDDEVLSYCEELHGKWPFSEIRAIFSR---R-----YLLQ---NTALELFLASR 85 (108)
T ss_pred EeccEEEEecCEEEEEECCccccccccCccceeccccccceeeHHHHHHHHHH---h-----hhcc---cceEEEEEeCC
Confidence 45899999999999997532211 10 124566666655432 1 1111 35799999999
Q ss_pred eEEEEeec
Q 047971 135 RIVVFGFR 142 (374)
Q Consensus 135 R~l~f~F~ 142 (374)
..+-|.|.
T Consensus 86 ~~~f~~F~ 93 (108)
T cd01201 86 TSIFFAFP 93 (108)
T ss_pred ceEEEEeC
Confidence 88899995
No 16
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=81.89 E-value=12 Score=30.62 Aligned_cols=72 Identities=17% Similarity=0.188 Sum_probs=47.3
Q ss_pred EEEeCCeEEEEeCCCCCceeeceeeccceeeeecccccccCCCCCCCCCCCcccEEEEecCceEEEEeecCCchhHHHHH
Q 047971 73 LIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSRRLLQVIGKDMRIVVFGFRPKTKQRRAVY 152 (374)
Q Consensus 73 L~lTnyRLiF~~~~~~~~~~l~~iPL~~Ieki~k~~~k~~s~~~~~~~~~~~~~L~I~CKDfR~l~f~F~~~~~~~~~v~ 152 (374)
..||+-+|.|-..+.+ -+...|||..|-.++..... + ......++|.+.| |.+.+.. ++..++.++.
T Consensus 26 F~Lt~~~L~Y~k~~~~--~~~g~I~L~~i~~ve~v~~~----~-----~~~~~~fqivt~~-r~~yi~a-~s~~E~~~Wi 92 (98)
T cd01244 26 FQLTTTHLSWAKDVQC--KKSALIKLAAIKGTEPLSDK----S-----FVNVDIITIVCED-DTMQLQF-EAPVEATDWL 92 (98)
T ss_pred EEECCCEEEEECCCCC--ceeeeEEccceEEEEEcCCc----c-----cCCCceEEEEeCC-CeEEEEC-CCHHHHHHHH
Confidence 5678888877643322 24568999999888764321 1 1113579999987 6776665 4456778888
Q ss_pred HHHHh
Q 047971 153 DALVK 157 (374)
Q Consensus 153 ~~L~~ 157 (374)
++|.+
T Consensus 93 ~al~k 97 (98)
T cd01244 93 NALEK 97 (98)
T ss_pred HHHhc
Confidence 88764
No 17
>PF03517 Voldacs: Regulator of volume decrease after cellular swelling; InterPro: IPR003521 The nucleotide-sensitive chloride conductance regulatory protein (ICln) is found ubiquitously in mammalian (and other) cell types and is postulated to play a critical role in cell volume regulation. Initial studies proposed that ICln was itself a swelling-activated anion channel; however, further studies demonstrated that it is localised primarily to the cell cytoplasm. It has therefore been postulated that activation of cell volume regulation may involve reversible translocation of ICln from the cytoplasm, and its insertion into the plasma membrane. It is not resolved whether the anionic channel involved in cell volume regulation after cell-swelling comprises one or more subunits, and if it does, whether ICln is in fact one of them [].; GO: 0006821 chloride transport, 0006884 cell volume homeostasis; PDB: 1ZYI_A.
Probab=79.11 E-value=6.6 Score=33.97 Aligned_cols=78 Identities=28% Similarity=0.391 Sum_probs=38.7
Q ss_pred eEEEEeCCeEEEEe-CCCCCc--eeeceeeccceeeeecccccccCCCCCCCCCCCcccEEEE-----------------
Q 047971 71 GTLIVTNFRILFLS-EGTRNI--IALGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSRRLLQVI----------------- 130 (374)
Q Consensus 71 GtL~lTnyRLiF~~-~~~~~~--~~l~~iPL~~Ieki~k~~~k~~s~~~~~~~~~~~~~L~I~----------------- 130 (374)
|+||||+-+|+|.+ .....- +++.+|-|..|.|.... ... .+ --.++|-
T Consensus 1 g~L~Vt~~~l~w~~~~~~~~G~~ipY~sI~lHAisr~~~~---------~~~-~~-~lY~qld~~~~~~~~~~~~~~~~~ 69 (135)
T PF03517_consen 1 GTLYVTESRLIWFSNEDSSKGFSIPYPSISLHAISRDPSG---------SFP-EP-CLYLQLDSDLEEDEEGDDEDDEED 69 (135)
T ss_dssp EEEEEETTEEEEEET--TTEEEEESS---SEEE--SS-S----------S---S---EEEEEE----SS-SSS---S--S
T ss_pred CEEEEecCEEEEECCCcCCcceeecCCeEEEEEeecCCCC---------CCC-Cc-eEEEEEecccCccccccccccccc
Confidence 89999999999999 333332 33345555555542110 000 00 0112221
Q ss_pred --ecCceEEEEeecCCch-h--HHHHHHHHHhhc
Q 047971 131 --GKDMRIVVFGFRPKTK-Q--RRAVYDALVKCA 159 (374)
Q Consensus 131 --CKDfR~l~f~F~~~~~-~--~~~v~~~L~~~~ 159 (374)
--+..++.+.|.|... + ...+|++|.+|+
T Consensus 70 ~~~~~~~~~El~l~P~~~~~~~l~~if~Als~C~ 103 (135)
T PF03517_consen 70 DEEDDESSVELRLVPSDPSSDMLDEIFEALSECQ 103 (135)
T ss_dssp -S--S-SEEEEEEEES-HHH--HHHHHHHHHHHH
T ss_pred cccccccceEEEEecCcccchHHHHHHHHHHHHH
Confidence 1245566777777643 3 789999998875
No 18
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=77.57 E-value=7.6 Score=30.63 Aligned_cols=62 Identities=26% Similarity=0.403 Sum_probs=39.5
Q ss_pred CcceEEEEeCCe--EEEEeCCCCCceeeceeeccceeeeecccccccCCCCCCCCCCCcccEEEEecCc---eEEEEee
Q 047971 68 DEAGTLIVTNFR--ILFLSEGTRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSRRLLQVIGKDM---RIVVFGF 141 (374)
Q Consensus 68 ~~~GtL~lTnyR--LiF~~~~~~~~~~l~~iPL~~Ieki~k~~~k~~s~~~~~~~~~~~~~L~I~CKDf---R~l~f~F 141 (374)
...|+|+||+=| +.+.+...+..- ..++|+..|...... |.+.. --.|+|.-||- .-..|.|
T Consensus 11 K~~G~L~l~~d~~~~~W~~~~~~~~~-~v~i~~~~I~~lq~S-------p~~s~----Kv~Lki~~~~~~~~~~~~f~F 77 (79)
T PF08567_consen 11 KKDGTLTLTEDRKPLEWTPKASDGPS-TVSIPLNDIKNLQQS-------PEGSP----KVMLKIVLKDDSSEESKTFVF 77 (79)
T ss_dssp TEEEEEEEETTCSSEEEEECCSSSSS-EEEEETTTEEEEEE---------TTSS----TEEEEEEETTSC---CCCEEE
T ss_pred cCCcEEEEecCCceEEEeecCCCCCc-eEEEEHHHhhhhccC-------CCCCc----ceEEEEEEecCCcccceEEEE
Confidence 457999999999 999987655442 227899999886432 22212 23477777766 4444444
No 19
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=75.24 E-value=47 Score=27.63 Aligned_cols=89 Identities=17% Similarity=0.220 Sum_probs=48.2
Q ss_pred cccCCceEEEEeccEEEeCC--CcceEEEEeCC-eEEEEeCCCCCceeeceeeccceeeeecccccccCCCCCCCCCCCc
Q 047971 48 LLLDAERIVVEGYGVVLVNT--DEAGTLIVTNF-RILFLSEGTRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSR 124 (374)
Q Consensus 48 ~LLpGE~vv~~~~~V~l~~~--~~~GtL~lTny-RLiF~~~~~~~~~~l~~iPL~~Ieki~k~~~k~~s~~~~~~~~~~~ 124 (374)
.|.|||.|+.+|. |..-.+ .-.=.|.||+. ||+++..... . .=+.||++.-.+++... .
T Consensus 6 fl~~ge~Il~~g~-v~K~kgl~~kkR~liLTd~PrL~Yvdp~~~-~-~KGeI~~~~~l~v~~k~---------------~ 67 (104)
T PF14593_consen 6 FLNPGELILKQGY-VKKRKGLFAKKRQLILTDGPRLFYVDPKKM-V-LKGEIPWSKELSVEVKS---------------F 67 (104)
T ss_dssp GTT-T--EEEEEE-EEEEETTEEEEEEEEEETTTEEEEEETTTT-E-EEEEE--STT-EEEECS---------------S
T ss_pred hhcCCCeEEEEEE-EEEeeceEEEEEEEEEccCCEEEEEECCCC-e-ECcEEecCCceEEEEcc---------------C
Confidence 4667999998863 211111 12447899999 9999975443 2 12468888554443211 2
Q ss_pred ccEEEEecCceEEEEeecCCchhHHHHHHHHHh
Q 047971 125 RLLQVIGKDMRIVVFGFRPKTKQRRAVYDALVK 157 (374)
Q Consensus 125 ~~L~I~CKDfR~l~f~F~~~~~~~~~v~~~L~~ 157 (374)
....|++. -|...|. +.+..+..+.++|..
T Consensus 68 ~~F~I~tp-~RtY~l~--d~~~~A~~W~~~I~~ 97 (104)
T PF14593_consen 68 KTFFIHTP-KRTYYLE--DPEGNAQQWVEAIEE 97 (104)
T ss_dssp SEEEEEET-TEEEEEE---TTS-HHHHHHHHHH
T ss_pred CEEEEECC-CcEEEEE--CCCCCHHHHHHHHHH
Confidence 35777777 6777763 234456777777764
No 20
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=70.14 E-value=8.3 Score=42.00 Aligned_cols=101 Identities=22% Similarity=0.226 Sum_probs=65.3
Q ss_pred ccCCceEEEEeccEEEeC--CCcce-------EEEEeCCeEEEEeCCCCCceeeceeeccceeeeecccccccCCCCCCC
Q 047971 49 LLDAERIVVEGYGVVLVN--TDEAG-------TLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTD 119 (374)
Q Consensus 49 LLpGE~vv~~~~~V~l~~--~~~~G-------tL~lTnyRLiF~~~~~~~~~~l~~iPL~~Ieki~k~~~k~~s~~~~~~ 119 (374)
+-|-|-+|.++....... .+.-| -..|||..|+|.-++..+.+ .+|||..|-.++|.-.| |
T Consensus 558 ~~p~~p~v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~~q~~--~~Ipl~nI~avEklee~--s------ 627 (800)
T KOG2059|consen 558 LSPQEPVVLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPGKQPI--YTIPLSNIRAVEKLEEK--S------ 627 (800)
T ss_pred cCCCCCceecccceEeccccccchhhhhhhheEEEeccceeEEecCCccCcc--cceeHHHHHHHHHhhhh--c------
Confidence 445565665554333322 12222 57799999999866544433 47999999888775422 1
Q ss_pred CCCCcccEEEEecCceEEEEeecCCchhHHHHHHHHHhhcCCC
Q 047971 120 KNPSRRLLQVIGKDMRIVVFGFRPKTKQRRAVYDALVKCATPA 162 (374)
Q Consensus 120 ~~~~~~~L~I~CKDfR~l~f~F~~~~~~~~~v~~~L~~~~~P~ 162 (374)
+.....++|.|-| |.+.|.- +..-+..++++.|.+-+...
T Consensus 628 -F~~knv~qVV~~d-rtly~Q~-~n~vEandWldaL~kvs~~N 667 (800)
T KOG2059|consen 628 -FKMKNVFQVVHTD-RTLYVQA-KNCVEANDWLDALRKVSCCN 667 (800)
T ss_pred -cCCCceEEEEecC-cceeEec-CCchHHHHHHHHHHHHhccC
Confidence 1114679999999 8766654 34567789999998866554
No 21
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=58.31 E-value=73 Score=23.54 Aligned_cols=78 Identities=18% Similarity=0.269 Sum_probs=50.4
Q ss_pred CcceEEEEeCCeEEEEeCCCCCceeeceeeccceeeeecccccccCCCCCCCCCCCcccEEEEecC--ceEEEEeecCCc
Q 047971 68 DEAGTLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSRRLLQVIGKD--MRIVVFGFRPKT 145 (374)
Q Consensus 68 ~~~GtL~lTnyRLiF~~~~~~~~~~l~~iPL~~Ieki~k~~~k~~s~~~~~~~~~~~~~L~I~CKD--fR~l~f~F~~~~ 145 (374)
.....++|++..|.+.....+.......+|+..|. +...... . .....++|.+++ .+.+.|.. ++.
T Consensus 19 w~~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~~-v~~~~~~--------~--~~~~~F~i~~~~~~~~~~~~~~-~~~ 86 (99)
T cd00900 19 WKRRWFFLFDDGLLLYKSDDKKEIKPGSIPLSEIS-VEEDPDG--------S--DDPNCFAIVTKDRGRRVFVFQA-DSE 86 (99)
T ss_pred ceeeEEEEECCEEEEEEcCCCCcCCCCEEEccceE-EEECCCC--------C--CCCceEEEECCCCCcEEEEEEc-CCH
Confidence 34677899999999987654433221357777776 5432100 0 113579999997 89888877 345
Q ss_pred hhHHHHHHHHHh
Q 047971 146 KQRRAVYDALVK 157 (374)
Q Consensus 146 ~~~~~v~~~L~~ 157 (374)
.+...+..+|..
T Consensus 87 ~~~~~W~~al~~ 98 (99)
T cd00900 87 EEAQEWVEALQQ 98 (99)
T ss_pred HHHHHHHHHHhc
Confidence 677778777753
No 22
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=42.90 E-value=77 Score=26.03 Aligned_cols=53 Identities=25% Similarity=0.358 Sum_probs=35.7
Q ss_pred eeceeeccceeeeecccccccCCCCCCCCCCCcccEEEEecCceEEEEeecCCchhHHHHHHHHHh
Q 047971 92 ALGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSRRLLQVIGKDMRIVVFGFRPKTKQRRAVYDALVK 157 (374)
Q Consensus 92 ~l~~iPL~~Ieki~k~~~k~~s~~~~~~~~~~~~~L~I~CKDfR~l~f~F~~~~~~~~~v~~~L~~ 157 (374)
+.+.|+|..+..|.+.... + ....+.|...| |.+.|.. +++.+..+++++|..
T Consensus 48 p~~vI~L~~c~~v~~~~d~---------k--~~~~f~i~t~d-r~f~l~a-ese~E~~~Wi~~i~~ 100 (101)
T cd01257 48 PKRVIPLESCFNINKRADA---------K--HRHLIALYTRD-EYFAVAA-ENEAEQDSWYQALLE 100 (101)
T ss_pred ceEEEEccceEEEeecccc---------c--cCeEEEEEeCC-ceEEEEe-CCHHHHHHHHHHHhh
Confidence 4456888888877543210 1 13579999988 8888877 445677788887753
No 23
>PF04283 CheF-arch: Chemotaxis signal transduction system protein F from archaea; InterPro: IPR007381 This is an archaeal protein of unknown function.
Probab=36.27 E-value=2.1e+02 Score=26.96 Aligned_cols=34 Identities=32% Similarity=0.512 Sum_probs=27.1
Q ss_pred CcceEEEEeCCeEEEEeCCCCCceeeceeeccceeeeec
Q 047971 68 DEAGTLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNK 106 (374)
Q Consensus 68 ~~~GtL~lTnyRLiF~~~~~~~~~~l~~iPL~~Ieki~k 106 (374)
...|.+.|||=||+|...+.. . .|||..|+.+..
T Consensus 25 W~~~rIiLs~~rlvl~~~~~k--~---~Ipls~I~Di~~ 58 (221)
T PF04283_consen 25 WVKGRIILSNDRLVLAFNDGK--I---TIPLSSIEDIGV 58 (221)
T ss_pred cEEEEEEEecCEEEEEcCCCe--E---EEecceeEeccc
Confidence 468999999999999984322 2 589999998864
No 24
>KOG3238 consensus Chloride ion current inducer protein [Inorganic ion transport and metabolism]
Probab=34.22 E-value=52 Score=30.59 Aligned_cols=40 Identities=28% Similarity=0.400 Sum_probs=26.1
Q ss_pred EeCCC--cceEEEEeCCeEEEEeCCCCCc--eeeceeeccceee
Q 047971 64 LVNTD--EAGTLIVTNFRILFLSEGTRNI--IALGTIPLAAIEK 103 (374)
Q Consensus 64 l~~~~--~~GtL~lTnyRLiF~~~~~~~~--~~l~~iPL~~Iek 103 (374)
++++. ..||||||.-+|++.+..-.+- +....|.|..|.+
T Consensus 27 ~ln~kvlg~GTlYIa~s~LsWl~~~~akGfSvey~~IsLHaiSr 70 (216)
T KOG3238|consen 27 VLNRKVLGTGTLYIAESTLSWLSTSGAKGFSVEYPTISLHAISR 70 (216)
T ss_pred eecCcccccceEEEecceEEeeecccccceeeecceeEEEeeeC
Confidence 44544 3799999999999998543222 2334566666654
No 25
>KOG2760 consensus Vacuolar sorting protein VPS36 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.24 E-value=50 Score=33.90 Aligned_cols=54 Identities=19% Similarity=0.422 Sum_probs=36.7
Q ss_pred CCceEEEEeccEEEeCCC------cceEEEEeCCeEEEEeC--CCCCceeeceeeccceeeee
Q 047971 51 DAERIVVEGYGVVLVNTD------EAGTLIVTNFRILFLSE--GTRNIIALGTIPLAAIEKLN 105 (374)
Q Consensus 51 pGE~vv~~~~~V~l~~~~------~~GtL~lTnyRLiF~~~--~~~~~~~l~~iPL~~Ieki~ 105 (374)
+-|++++...+|.++.+. ..|++.+|++|+++.+. ..+.... ..+||..|..+.
T Consensus 41 ~ne~l~lt~~~I~~~D~~~k~~~~~dg~~vltt~Rliw~~p~~~~~~~~~-~~~pls~vI~v~ 102 (432)
T KOG2760|consen 41 QNETLLLTSQRIIIYDGDKKTTKFDDGTLVLTTHRLIWRSPTSSADVEVT-WVCPLSMVINVG 102 (432)
T ss_pred cCceEEEeecceEEecCCCccccccchhhhhhhceeeecCccccccccee-eeeceeEEEEec
Confidence 578888888899887643 37999999999999952 2222211 146666665554
No 26
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.87 E-value=1.3e+02 Score=28.87 Aligned_cols=107 Identities=21% Similarity=0.244 Sum_probs=69.1
Q ss_pred ccccchHHHHHhhhcccCCCcceEEeeecCCCceEEeccCcccccccCCCChHHHHHHHHHHHhccCCCCCCCcEEEEcC
Q 047971 240 PECIIDQELLQASSFRARYRLPVISWCHSGTGAVLARSSQPLVGLMMNMRSNADEKLVASLCTQLAGGKMSRRKLYIADA 319 (374)
Q Consensus 240 P~~i~d~~l~~~a~fRs~~R~Pv~sw~h~~~~a~L~RssqP~~G~~~~~r~~~De~ll~~i~~~~~~~~~~~~~l~I~D~ 319 (374)
|..-.++.+..+- +...++|-.+..+..-| .|=.+++.+|+.+.... ..+.||++|.
T Consensus 101 ~~~s~~e~~~rl~--~a~~~v~~~~GlnNhmG----------------s~~tsn~~aM~~~m~~L-----k~r~l~flDs 157 (250)
T COG2861 101 PGMSAEEILRRLR--KAMNKVPDAVGLNNHMG----------------SRFTSNEDAMEKLMEAL-----KERGLYFLDS 157 (250)
T ss_pred cCCCHHHHHHHHH--HHHhhCccceeehhhhh----------------hhhcCcHHHHHHHHHHH-----HHCCeEEEcc
Confidence 3434555555543 33467887777653333 34455666666665444 2567999999
Q ss_pred CcchhHHhhccC-CCCCcCCCCCCCceEEEcC-CCChHHHHHHHHHHHHHHhhcCCC
Q 047971 320 RPRKNALANGAM-GGGSESSSNYFQSEIVFFG-IDNIHAMRESFARLRDYLDTHGTT 374 (374)
Q Consensus 320 R~~~nA~an~a~-G~G~E~~~~Y~~~~~~f~~-I~NIH~mr~S~~kl~~~~~~~g~~ 374 (374)
+.-.+.+|++.. +.|.-... +=+||+ =.+--.|+.-|+++..+...+|++
T Consensus 158 ~T~a~S~a~~iAk~~gVp~~~-----rdvfLD~e~~~~~V~kql~~~~~~Ark~G~a 209 (250)
T COG2861 158 GTIANSLAGKIAKEIGVPVIK-----RDVFLDDEDTEAAVLKQLDAAEKLARKNGSA 209 (250)
T ss_pred cccccchhhhhHhhcCCceee-----eeeeecCcCCHHHHHHHHHHHHHHHHhcCce
Confidence 999999999865 45553221 235655 334568888899999999999874
No 27
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=25.45 E-value=2.9e+02 Score=20.64 Aligned_cols=82 Identities=11% Similarity=0.198 Sum_probs=50.4
Q ss_pred ceEEEEeCCeEEEEeCCCC--CceeeceeeccceeeeecccccccCCCCCCCCCCCcccEEEEecCceEEEEeecCCchh
Q 047971 70 AGTLIVTNFRILFLSEGTR--NIIALGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSRRLLQVIGKDMRIVVFGFRPKTKQ 147 (374)
Q Consensus 70 ~GtL~lTnyRLiF~~~~~~--~~~~l~~iPL~~Ieki~k~~~k~~s~~~~~~~~~~~~~L~I~CKDfR~l~f~F~~~~~~ 147 (374)
.--++|++-.|++-..+.+ ..-....|+|..+ .+....... .. ........+.|..++.+.+.|.. ++..+
T Consensus 19 ~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~----~~-~~~~~~~~f~i~~~~~~~~~~~~-~s~~~ 91 (104)
T PF00169_consen 19 KRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSD----FL-SNKKRKNCFEITTPNGKSYLFSA-ESEEE 91 (104)
T ss_dssp EEEEEEETTEEEEESSTTTTTESSESEEEEGTTE-EEEEETSST----ST-STSSSSSEEEEEETTSEEEEEEE-SSHHH
T ss_pred EEEEEEECCEEEEEecCccccceeeeEEEEecCc-eEEEcCccc----cc-cccCCCcEEEEEeCCCcEEEEEc-CCHHH
Confidence 3456777777777755442 2233446788877 454322100 00 01112567999999998888887 45677
Q ss_pred HHHHHHHHHhh
Q 047971 148 RRAVYDALVKC 158 (374)
Q Consensus 148 ~~~v~~~L~~~ 158 (374)
..++..+|+..
T Consensus 92 ~~~W~~~i~~~ 102 (104)
T PF00169_consen 92 RKRWIQAIQKA 102 (104)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888764
No 28
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=24.79 E-value=4e+02 Score=22.05 Aligned_cols=20 Identities=5% Similarity=0.154 Sum_probs=15.3
Q ss_pred CCchhHHHHHHHHHhhcCCC
Q 047971 143 PKTKQRRAVYDALVKCATPA 162 (374)
Q Consensus 143 ~~~~~~~~v~~~L~~~~~P~ 162 (374)
+...++.++.++|.+...|.
T Consensus 97 ~s~~e~~~Wi~al~~~~~~~ 116 (125)
T cd01252 97 ANDEEMDEWIKSIKASISPN 116 (125)
T ss_pred CCHHHHHHHHHHHHHHHhcC
Confidence 34567889999998877664
No 29
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=22.77 E-value=84 Score=34.46 Aligned_cols=40 Identities=25% Similarity=0.263 Sum_probs=27.9
Q ss_pred CcccCCceEEEEecc-----EEE-eCC-CcceEEEEeCCeEEEEeCC
Q 047971 47 DLLLDAERIVVEGYG-----VVL-VNT-DEAGTLIVTNFRILFLSEG 86 (374)
Q Consensus 47 ~~LLpGE~vv~~~~~-----V~l-~~~-~~~GtL~lTnyRLiF~~~~ 86 (374)
-.|..||.|++-+.. |+. ++. .=.|.|.||||=|+|.+.+
T Consensus 201 ~~l~~~E~IL~idgt~~tqPVl~hig~saWPGRLTLTn~ALYFEa~g 247 (683)
T PF04842_consen 201 LELAEDEKILDIDGTATTQPVLQHIGISAWPGRLTLTNHALYFEAIG 247 (683)
T ss_pred cccCCCcEEEEecCCCCCCchhhccccccCCceeEeecceeeeeecc
Confidence 356789998865533 332 222 2379999999999999753
No 30
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=22.44 E-value=4.2e+02 Score=21.45 Aligned_cols=79 Identities=15% Similarity=0.230 Sum_probs=42.7
Q ss_pred EEEeCCeEEEEeCCCCC-ceeeceeeccceeeeecccccccCCCCCCCCCCCcccEEEEecCceEEEEeecCCchhHHHH
Q 047971 73 LIVTNFRILFLSEGTRN-IIALGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSRRLLQVIGKDMRIVVFGFRPKTKQRRAV 151 (374)
Q Consensus 73 L~lTnyRLiF~~~~~~~-~~~l~~iPL~~Ieki~k~~~k~~s~~~~~~~~~~~~~L~I~CKDfR~l~f~F~~~~~~~~~v 151 (374)
..|++..|.|--...+. .-..+.|||..+..++...... .+....+ ....++|.+.| |.+.+.- ++..++.++
T Consensus 26 FvL~~~~L~Yyk~~~~~~~~~kG~I~L~~~~~ve~~~~~~--~~~~~~~--~~~~F~i~t~~-r~~yl~A-~s~~er~~W 99 (106)
T cd01238 26 FVLTKSKLSYYEGDFEKRGSKKGSIDLSKIKCVETVKPEK--NPPIPER--FKYPFQVVHDE-GTLYVFA-PTEELRKRW 99 (106)
T ss_pred EEEcCCEEEEECCCcccccCcceeEECCcceEEEEecCCc--Ccccccc--cCccEEEEeCC-CeEEEEc-CCHHHHHHH
Confidence 55677778665433221 1244678888877665432110 0000000 13468888876 4444432 445677788
Q ss_pred HHHHHh
Q 047971 152 YDALVK 157 (374)
Q Consensus 152 ~~~L~~ 157 (374)
.++|.+
T Consensus 100 I~ai~~ 105 (106)
T cd01238 100 IKALKQ 105 (106)
T ss_pred HHHHHh
Confidence 888764
No 31
>PRK12791 flbT flagellar biosynthesis repressor FlbT; Reviewed
Probab=20.75 E-value=1.2e+02 Score=26.43 Aligned_cols=32 Identities=25% Similarity=0.248 Sum_probs=25.1
Q ss_pred CcCcccCCceEEEEeccEEEeCCCcceEEEEeCC
Q 047971 45 NLDLLLDAERIVVEGYGVVLVNTDEAGTLIVTNF 78 (374)
Q Consensus 45 ~~~~LLpGE~vv~~~~~V~l~~~~~~GtL~lTny 78 (374)
++-.|.|||.++.. |.++-|++...+|.|+|.
T Consensus 3 Lkl~LKP~ERi~IN--GaVi~Ngdrr~~l~i~n~ 34 (131)
T PRK12791 3 LRVELKPFERIVIG--QSVITNSDTRARFLIDGD 34 (131)
T ss_pred eeEEeCCCCEEEEc--CEEEEeCCcceEEEEeCC
Confidence 34568899999876 566777788899988887
Done!