Query 047971
Match_columns 374
No_of_seqs 215 out of 646
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 08:20:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047971.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047971hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zsq_A Myotubularin-related pr 100.0 1.5E-75 5.1E-80 601.9 31.7 295 44-369 4-302 (528)
2 1lw3_A Myotubularin-related pr 100.0 4.8E-75 1.6E-79 606.7 31.7 294 45-369 77-374 (657)
3 2yf0_A Myotubularin-related pr 100.0 9E-71 3.1E-75 564.1 27.5 275 56-370 6-290 (512)
4 2cay_A VPS36 PH domain, vacuol 98.0 1E-05 3.5E-10 70.0 6.6 65 42-107 18-88 (145)
5 2hth_B Vacuolar protein sortin 97.9 2.3E-05 7.8E-10 67.4 7.8 61 45-107 9-74 (140)
6 3hsa_A Pleckstrin homology dom 96.7 0.012 4E-07 49.5 10.1 100 42-158 21-123 (126)
7 1w7p_D VPS36P, YLR417W; ESCRT- 96.3 0.00061 2.1E-08 70.7 0.0 65 43-108 11-81 (566)
8 3b77_A Uncharacterized protein 93.0 0.84 2.9E-05 40.7 10.7 109 36-161 9-124 (193)
9 1pfj_A TFIIH basal transcripti 91.1 2.2 7.5E-05 34.7 10.3 91 52-157 5-98 (108)
10 1zyi_A Methylosome subunit pic 85.9 0.57 2E-05 41.2 3.8 56 48-103 16-77 (171)
11 1w1g_A HPDK1, 3-phosphoinositi 58.9 84 0.0029 26.7 11.0 89 49-158 46-137 (151)
12 1t77_A Lipopolysaccharide-resp 54.6 22 0.00075 35.3 6.7 76 68-155 17-105 (414)
13 1y5o_A TFB1, RNA polymerase II 49.9 1E+02 0.0035 25.0 9.1 75 68-157 11-106 (115)
14 1wgq_A FYVE, rhogef and PH dom 49.7 81 0.0028 23.8 9.2 77 73-162 29-105 (109)
15 1pls_A Pleckstrin homology dom 39.0 1.2E+02 0.0042 22.8 8.9 75 72-158 25-99 (113)
16 2dkp_A Pleckstrin homology dom 37.3 1.4E+02 0.0048 22.9 8.7 78 72-160 42-119 (128)
17 2lul_A Tyrosine-protein kinase 31.7 2.2E+02 0.0076 23.6 9.8 82 73-161 41-122 (164)
18 1u5d_A SKAP55, SRC kinase-asso 30.8 1.6E+02 0.0054 21.6 7.6 34 124-158 70-103 (108)
19 1wg7_A Dedicator of cytokinesi 28.2 2.1E+02 0.007 22.8 7.7 34 124-158 89-122 (150)
20 1x1g_A Pleckstrin 2; PH domain 27.8 1.7E+02 0.006 22.4 7.0 35 124-159 89-123 (129)
21 2yry_A Pleckstrin homology dom 27.3 2E+02 0.0069 21.7 8.7 77 72-159 43-119 (122)
22 2cod_A Centaurin-delta 1; ARF 26.3 2.1E+02 0.0071 21.5 8.4 70 72-159 29-98 (115)
23 1btk_A Bruton'S tyrosine kinas 25.3 2.5E+02 0.0087 23.4 8.0 86 73-160 29-132 (169)
24 2d9y_A Pleckstrin homology dom 25.1 2.2E+02 0.0074 21.3 9.3 78 72-160 32-109 (117)
25 2lyd_A Decapping protein 1; DC 22.7 3.2E+02 0.011 22.4 9.5 33 125-158 98-130 (134)
26 2qkl_A DCP1 protein, SPBC3B9.2 21.4 3.3E+02 0.011 22.1 9.8 32 126-158 93-124 (127)
27 2qv5_A AGR_C_5032P, uncharacte 20.9 30 0.001 32.1 1.1 105 242-373 106-212 (261)
28 2dn6_A KIAA0640 protein; PH do 20.7 2.6E+02 0.009 20.7 8.6 73 73-158 29-101 (115)
No 1
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*
Probab=100.00 E-value=1.5e-75 Score=601.90 Aligned_cols=295 Identities=37% Similarity=0.571 Sum_probs=261.1
Q ss_pred CCcCcccCCceEEEEeccEEEeC---CCcceEEEEeCCeEEEEeCCCCCceeeceeeccceeeeecccccccCCCCCCCC
Q 047971 44 ANLDLLLDAERIVVEGYGVVLVN---TDEAGTLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTDK 120 (374)
Q Consensus 44 ~~~~~LLpGE~vv~~~~~V~l~~---~~~~GtL~lTnyRLiF~~~~~~~~~~l~~iPL~~Ieki~k~~~k~~s~~~~~~~ 120 (374)
...+.|||||.|+.++.+|.++. +.+.|+|+||||||+|++.+.+....+ +|||++|++|+++.+. + ..+
T Consensus 4 ~~~~~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~~~~~~~-~iPL~~I~~vek~~~~--s-~~~--- 76 (528)
T 1zsq_A 4 MEEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVL-DASLGVINRVEKIGGA--S-SRG--- 76 (528)
T ss_dssp CCCCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSSSCEEE-EEEGGGEEEEEEECCT--T-CCS---
T ss_pred CCCCccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEccCCCccEEE-EeeccceEEEEEcCCC--C-cCC---
Confidence 45678999999999999999873 468999999999999999765544333 8999999999986421 1 111
Q ss_pred CCCcccEEEEecCceEEEEeecCCchhHHHHHHHHHhhcCCCchh-cccccccCCCCCCCCCcccchhhHHHHHhcCCCC
Q 047971 121 NPSRRLLQVIGKDMRIVVFGFRPKTKQRRAVYDALVKCATPARIW-DIYAFSSGPSKCVNTNPKVRLLNEYFRLLGKSSS 199 (374)
Q Consensus 121 ~~~~~~L~I~CKDfR~l~f~F~~~~~~~~~v~~~L~~~~~P~~~~-~lFAF~~~p~~~~~~~p~~~~~~E~~R~~~~~~~ 199 (374)
...+.|+|+|||||+++|.|.+++.+++++|++|.++++|.+.. .||||.|+|....+.|..++...||+|+
T Consensus 77 -~~~~~l~I~CKDfr~~~f~f~~~~~~~~~v~~~L~~~~~p~~~~~~lfaF~y~~~~~~~gw~~y~~~~E~~R~------ 149 (528)
T 1zsq_A 77 -ENSYGLETVCKDIRNLRFAHKPEGRTRRSIFENLMKYAFPVSNNLPLFAFEYKEVFPENGWKLYDPLLEYRRQ------ 149 (528)
T ss_dssp -TTCSEEEEEETTTEEEEEECCGGGCCHHHHHHHHHHHSCTTTTTCCCGGGTCCCCCSSCGGGSCCHHHHHHHT------
T ss_pred -CCCceEEEEccCCeEEEEEecCchHHHHHHHHHHHHHhcCCccccceeeeeccccccCCCceecCHHHHHHHc------
Confidence 11467999999999999999765567999999999999998776 4999999998766667778888899986
Q ss_pred CcchhhhhhccCCCCCCCeEEEeccCCCcccccCCCccccccccchHHHHHhhhcccCCCcceEEeeecCCCceEEeccC
Q 047971 200 SATMDMIEEGSFTLSNELWRISDINSTYTMCQSYPFALIVPECIIDQELLQASSFRARYRLPVISWCHSGTGAVLARSSQ 279 (374)
Q Consensus 200 ~~~~e~~~~g~~~~~~~~WRis~~N~~y~~c~tYP~~lvVP~~i~d~~l~~~a~fRs~~R~Pv~sw~h~~~~a~L~Rssq 279 (374)
++++..||||.+|++|++|+|||..+|||++++|++|.++|+||+++|||||||+|+.|||+|+||||
T Consensus 150 ------------g~~~~~WRis~vN~~y~~c~tYP~~lvVP~~i~D~~l~~~a~frs~~R~Pvl~w~h~~~~a~l~Rssq 217 (528)
T 1zsq_A 150 ------------GIPNESWRITKINERYELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPESQATITRCSQ 217 (528)
T ss_dssp ------------TCSCSSEEEECTTTTSSSCTTSCSSEEEETTCCHHHHHHHHHHBGGGCCCEEEEECTTTCCEEEEECC
T ss_pred ------------CCCcccEEEEEecCCCCccCCCCCeEEEeCcCCHHHHHHHHHHhhcCCceEEEEEcCCCCcEEEEcCC
Confidence 35667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCChHHHHHHHHHHHhccCCCCCCCcEEEEcCCcchhHHhhccCCCCCcCCCCCCCceEEEcCCCChHHHHH
Q 047971 280 PLVGLMMNMRSNADEKLVASLCTQLAGGKMSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRE 359 (374)
Q Consensus 280 P~~G~~~~~r~~~De~ll~~i~~~~~~~~~~~~~l~I~D~R~~~nA~an~a~G~G~E~~~~Y~~~~~~f~~I~NIH~mr~ 359 (374)
|++|+. ++||.+||+||++|+.+++ ..++++|+||||+.||+||+|+|||||++++|+||+++|+||+|||+||+
T Consensus 218 P~~g~~-~~r~~~DE~~l~~i~~~~~----~~~~~~i~D~rp~~~A~an~a~G~G~E~~~~Y~~~~~~f~~i~nIh~~r~ 292 (528)
T 1zsq_A 218 PMVGVS-GKRSKEDEKYLQAIMDSNA----QSHKIFIFDARPSVNAVANKAKGGGYESEDAYQNAELVFLDIHNIHVMRE 292 (528)
T ss_dssp BCCTTT-TCCCHHHHHHHHHHHHHSS----SCSSEEEEECSCHHHHHHHHHHTCCCCCTTTCTTEEEEECCCCCHHHHHH
T ss_pred cCcccc-cCCCHHHHHHHHHHHHhCc----ccCccEEEccCchhhHHHhhhcCCcccCcccccCceEEEcCCccHHHHHH
Confidence 999986 6899999999999987552 36789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 047971 360 SFARLRDYLD 369 (374)
Q Consensus 360 S~~kl~~~~~ 369 (374)
||.||+++|.
T Consensus 293 S~~kL~~~~~ 302 (528)
T 1zsq_A 293 SLRKLKEIVY 302 (528)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhC
Confidence 9999999995
No 2
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A
Probab=100.00 E-value=4.8e-75 Score=606.73 Aligned_cols=294 Identities=37% Similarity=0.571 Sum_probs=260.3
Q ss_pred CcCcccCCceEEEEeccEEEeC---CCcceEEEEeCCeEEEEeCCCCCceeeceeeccceeeeecccccccCCCCCCCCC
Q 047971 45 NLDLLLDAERIVVEGYGVVLVN---TDEAGTLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTDKN 121 (374)
Q Consensus 45 ~~~~LLpGE~vv~~~~~V~l~~---~~~~GtL~lTnyRLiF~~~~~~~~~~l~~iPL~~Ieki~k~~~k~~s~~~~~~~~ 121 (374)
..+.|||||.|+.++.+|.++. +.+.|+|+||||||+|++.+.++...+ +|||++|++|+++.+. + ..+
T Consensus 77 ~~~~LLPGE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~~~~~~~~-~IPL~~I~~Iekv~g~--s-~~g---- 148 (657)
T 1lw3_A 77 EEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVL-DASLGVINRVEKIGGA--S-SRG---- 148 (657)
T ss_dssp CCCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSSSCEEE-EEEGGGEEEEEEECCT--T-CCS----
T ss_pred CCCccCCCeeEEEEeCCEEEecCCCCceeEEEEEECCEEEEEecCCCcceEE-EecccceEEEEecCCC--c-ccC----
Confidence 3578999999999999999873 458999999999999999765544443 8999999999986421 1 111
Q ss_pred CCcccEEEEecCceEEEEeecCCchhHHHHHHHHHhhcCCCchh-cccccccCCCCCCCCCcccchhhHHHHHhcCCCCC
Q 047971 122 PSRRLLQVIGKDMRIVVFGFRPKTKQRRAVYDALVKCATPARIW-DIYAFSSGPSKCVNTNPKVRLLNEYFRLLGKSSSS 200 (374)
Q Consensus 122 ~~~~~L~I~CKDfR~l~f~F~~~~~~~~~v~~~L~~~~~P~~~~-~lFAF~~~p~~~~~~~p~~~~~~E~~R~~~~~~~~ 200 (374)
...+.|+|+|||||+++|.|.+++.+++++|++|.++++|.+.. .||||.|.+....+.|..++...||+|+
T Consensus 149 ~~~~~l~I~CKDfR~~~f~f~~~~~~~~~v~~~L~~~~~P~~~~~~lfAF~y~~~~~~~Gw~~yd~~~E~~R~------- 221 (657)
T 1lw3_A 149 ENSYGLETVCKDIRNLRFAHKPEGRTRRSIFENLMKYAFPVSNNLPLFAFEYKEVFPENGWKLYDPLLEYRRQ------- 221 (657)
T ss_dssp TTCSEEEEEETTTEEEEEECCGGGCCHHHHHHHHHHHHSSGGGTCCCGGGTCCCCCSSCGGGSCCHHHHHHHH-------
T ss_pred CCCceEEEEecCCcEEEEEeCCccchHHHHHHHHHHHhCCCcccccceeecccccccCCCceecCHHHHHHHh-------
Confidence 11467999999999999999765567999999999999998776 4999999998766667788888999997
Q ss_pred cchhhhhhccCCCCCCCeEEEeccCCCcccccCCCccccccccchHHHHHhhhcccCCCcceEEeeecCCCceEEeccCc
Q 047971 201 ATMDMIEEGSFTLSNELWRISDINSTYTMCQSYPFALIVPECIIDQELLQASSFRARYRLPVISWCHSGTGAVLARSSQP 280 (374)
Q Consensus 201 ~~~e~~~~g~~~~~~~~WRis~~N~~y~~c~tYP~~lvVP~~i~d~~l~~~a~fRs~~R~Pv~sw~h~~~~a~L~RssqP 280 (374)
++++..||||.+|++|++|+|||..||||++++|++|..+|+||+++|||||||+|+.|||+|+|||||
T Consensus 222 -----------g~~~~~WRis~vN~~y~~C~TYP~~lvVP~~isD~~L~~~a~fRs~~R~Pvlsw~h~~~~a~l~RsSQP 290 (657)
T 1lw3_A 222 -----------GIPNESWRITKINERYELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPESQATITRCSQP 290 (657)
T ss_dssp -----------TCSCSSEEEECTTTTSCSCTTSCSCEEEETTCCHHHHHHHHHHBGGGCCCEEEEECTTTCCEEEEECCB
T ss_pred -----------CCCcccEEEEeecCCCCccCCCCCeEEEeCcCCHHHHHHHHHHhhcCCceEEEEEcCCCCcEEEEcCCc
Confidence 345678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCChHHHHHHHHHHHhccCCCCCCCcEEEEcCCcchhHHhhccCCCCCcCCCCCCCceEEEcCCCChHHHHHH
Q 047971 281 LVGLMMNMRSNADEKLVASLCTQLAGGKMSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRES 360 (374)
Q Consensus 281 ~~G~~~~~r~~~De~ll~~i~~~~~~~~~~~~~l~I~D~R~~~nA~an~a~G~G~E~~~~Y~~~~~~f~~I~NIH~mr~S 360 (374)
++|+. ++||.+||+||++|+.++ ...++++|+||||+.||+||+|+|||||++++|+||+++|+||+|||+||+|
T Consensus 291 l~G~~-~~r~~eDE~ll~ai~~a~----~~~~~l~I~DaRp~~nA~an~a~G~G~E~~~~Y~~~~~~fl~I~nIh~mr~S 365 (657)
T 1lw3_A 291 MVGVS-GKRSKEDEKYLQAIMDSN----AQSHKIFIFDARPSVNAVANKAKGGGYESEDAYQNAELVFLDIHNIHVMRES 365 (657)
T ss_dssp CCTTT-TCCCHHHHHHHHHHHTTC----TTCCCEEEEECSCHHHHHHHHTTTCCCCCTTTCTTEEEEECCCCCHHHHHHH
T ss_pred Ccccc-cCCCHHHHHHHHHHHHhC----cccCccEEEccCchhHHHHHhhcCCcccCcccccCceEEECCCccHHHHHHH
Confidence 99986 689999999999998643 3467899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 047971 361 FARLRDYLD 369 (374)
Q Consensus 361 ~~kl~~~~~ 369 (374)
|.||+++|.
T Consensus 366 ~~KL~~~c~ 374 (657)
T 1lw3_A 366 LRKLKEIVY 374 (657)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhC
Confidence 999999995
No 3
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Probab=100.00 E-value=9e-71 Score=564.11 Aligned_cols=275 Identities=32% Similarity=0.525 Sum_probs=233.7
Q ss_pred EEEeccEEEeC------CCcceEEEEeCCeEEEEeCCCCCceeeceeeccceeeeecccccccCCCCCCCCCCCcccEEE
Q 047971 56 VVEGYGVVLVN------TDEAGTLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSRRLLQV 129 (374)
Q Consensus 56 v~~~~~V~l~~------~~~~GtL~lTnyRLiF~~~~~~~~~~l~~iPL~~Ieki~k~~~k~~s~~~~~~~~~~~~~L~I 129 (374)
+...++|.++. ..+.|+|+||||||+|++...+ ++ .||+..|++|+|... + . ....|+|
T Consensus 6 ~~~v~~V~l~~~~~~~~~~~~GtL~lTn~~LiF~~~~~~-e~---wi~~~~I~~VeK~~~---~-----~---~~~~l~I 70 (512)
T 2yf0_A 6 TTKVEQVKLLDRFSTSNKSLTGTLYLTATHLLFIDSHQK-ET---WILHHHIASVEKLAL---T-----T---SGCPLVI 70 (512)
T ss_dssp EEEEEECCCC--------CCEEEEEECSSEEEEEESSSC-EE---EEEGGGEEEEEECCC---B-----T---TBEEEEE
T ss_pred cCccccEEEEeccCCCCCceeEEEEEECCEEEEeCCCCC-ce---EecccceeEEEEecC---C-----C---CCceEEE
Confidence 34566777753 3689999999999999995443 33 478889999886421 0 0 1357999
Q ss_pred EecCceEEEEeecCCchhHHHHHHHHHhhcCCCchhcccccccCCCCCC----CCCcccchhhHHHHHhcCCCCCcchhh
Q 047971 130 IGKDMRIVVFGFRPKTKQRRAVYDALVKCATPARIWDIYAFSSGPSKCV----NTNPKVRLLNEYFRLLGKSSSSATMDM 205 (374)
Q Consensus 130 ~CKDfR~l~f~F~~~~~~~~~v~~~L~~~~~P~~~~~lFAF~~~p~~~~----~~~p~~~~~~E~~R~~~~~~~~~~~e~ 205 (374)
+|||||+++|.|. .+.+|+++|++|.++++|.+++.||||.|+|.... +.|..++..+||+|+
T Consensus 71 ~CKDfr~~~f~f~-~~~~~~~v~~sL~~~~~p~~~~~lfaF~y~~~~~~~~~~~gw~~yd~~~E~~R~------------ 137 (512)
T 2yf0_A 71 QCKNFRTVHFIVP-RERDCHDIYNSLLQLSKQAKYEDLYAFSYNPKQNDSERLQGWQLIDLAEEYKRM------------ 137 (512)
T ss_dssp EETTSCEEEEEES-CHHHHHHHHHHHHHHSCCCCSTTSGGGTCCCSCCSHHHHHHHTTCCHHHHHHHT------------
T ss_pred EecCCcEEEEEeC-ChHHHHHHHHHHHhhcCCCCcceeEEEeccccccccccCCCccccCHHHHHHHc------------
Confidence 9999999999994 56789999999999999999999999999986532 223455666777775
Q ss_pred hhhccCCCCCCCeEEEeccCCCcccccCCCccccccccchHHHHHhhhcccCCCcceEEeeecCCCceEEeccCcccccc
Q 047971 206 IEEGSFTLSNELWRISDINSTYTMCQSYPFALIVPECIIDQELLQASSFRARYRLPVISWCHSGTGAVLARSSQPLVGLM 285 (374)
Q Consensus 206 ~~~g~~~~~~~~WRis~~N~~y~~c~tYP~~lvVP~~i~d~~l~~~a~fRs~~R~Pv~sw~h~~~~a~L~RssqP~~G~~ 285 (374)
++++..||||.+|++|++|+|||..+|||++++|++|.++|+||+++|||||||+|+.|||+|+|||||++|+.
T Consensus 138 ------g~~~~~WRis~~N~~y~~c~tYP~~lvVP~~i~D~~l~~~a~fRs~~R~Pvl~w~h~~~~a~l~RssQP~~G~~ 211 (512)
T 2yf0_A 138 ------GVPNSHWQLSDANRDYKICETYPRELYVPRIASKPIIVGSSKFRSKGRFPVLSYYHQDKEAAICRCSQPLSGFS 211 (512)
T ss_dssp ------TCSSSSEEEEGGGTTSCSCSSSCSSEEEESSSCHHHHHHHHHHBGGGCCCEEEEECTTTCCEEEECCCBCCCSS
T ss_pred ------CCCcccEEEehhhcCCCccccCCceEEEeCcCCHHHHHHHHHHhhcCCceEEEEEcCCCCeEEEecCCcCcCcc
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred cCCCChHHHHHHHHHHHhccCCCCCCCcEEEEcCCcchhHHhhccCCCCCcCCCCCCCceEEEcCCCChHHHHHHHHHHH
Q 047971 286 MNMRSNADEKLVASLCTQLAGGKMSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRESFARLR 365 (374)
Q Consensus 286 ~~~r~~~De~ll~~i~~~~~~~~~~~~~l~I~D~R~~~nA~an~a~G~G~E~~~~Y~~~~~~f~~I~NIH~mr~S~~kl~ 365 (374)
.||.+||+||++|+.+.+ ..++++|+||||++||+||+|+|||||++++||||+++|+||+|||+||+||+||+
T Consensus 212 --~r~~eDE~ll~~i~~~~~----~~~~~~i~D~rp~~~a~an~a~G~G~E~~~~Y~~~~~~f~~i~nIh~~r~S~~kL~ 285 (512)
T 2yf0_A 212 --ARCLEDEHLLQAISKANP----VNRYMYVMDTRPKLNAMANRAAGKGYENEDNYSNIRFQFVGIENIHVMRSSLQKLL 285 (512)
T ss_dssp --CCCHHHHHHHHHHHHHCS----SCCCEEEEECCSSCCC----CCCCSCCCTTTSTTEEEEECCCCCHHHHHHHHHHHH
T ss_pred --cCCHHHHHHHHHHHHhCC----CCCceEEEecCchhhHHHHHhcCCCcccccccCCceeEecChhhHHHHHHHHHHHH
Confidence 699999999999987653 35789999999999999999999999999999999999999999999999999999
Q ss_pred HHHhh
Q 047971 366 DYLDT 370 (374)
Q Consensus 366 ~~~~~ 370 (374)
++|..
T Consensus 286 ~~~~~ 290 (512)
T 2yf0_A 286 EVNGT 290 (512)
T ss_dssp HHHSC
T ss_pred HHhcC
Confidence 99964
No 4
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=97.98 E-value=1e-05 Score=69.99 Aligned_cols=65 Identities=17% Similarity=0.259 Sum_probs=50.5
Q ss_pred ccCCcCcccCCceEEEEeccEEEeCC------CcceEEEEeCCeEEEEeCCCCCceeeceeeccceeeeecc
Q 047971 42 SHANLDLLLDAERIVVEGYGVVLVNT------DEAGTLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKM 107 (374)
Q Consensus 42 ~~~~~~~LLpGE~vv~~~~~V~l~~~------~~~GtL~lTnyRLiF~~~~~~~~~~l~~iPL~~Ieki~k~ 107 (374)
.-+++|.|+|||.++....+|.+..+ ...|+||||||||||.......... ..+||..|..++..
T Consensus 18 t~s~rp~L~~~E~il~~~d~V~Ly~g~~k~~~~k~G~lyLTshRIIyv~~~~~~~~S-fslPL~~v~~~e~~ 88 (145)
T 2cay_A 18 TSSGQPLLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDAKPTQNS-LGLELDDLAYVNYS 88 (145)
T ss_dssp CTTSCBCCCTTCCEEEEEEEEEEEETTEECTTCSSEEEEEESSEEEEEESSCHHHHC-EEEEGGGEEEEEEE
T ss_pred ccCCCcccCCCCEEEEEcCCcceecCCCCCcCCCccEEEEEcCeEEEecCCCCcceE-EEeEhHheeeeeEE
Confidence 45689999999999988889988532 3579999999999999754322122 27899999998754
No 5
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=97.93 E-value=2.3e-05 Score=67.43 Aligned_cols=61 Identities=23% Similarity=0.362 Sum_probs=48.9
Q ss_pred CcCcccCCceEEEEeccEEEeCC-----CcceEEEEeCCeEEEEeCCCCCceeeceeeccceeeeecc
Q 047971 45 NLDLLLDAERIVVEGYGVVLVNT-----DEAGTLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKM 107 (374)
Q Consensus 45 ~~~~LLpGE~vv~~~~~V~l~~~-----~~~GtL~lTnyRLiF~~~~~~~~~~l~~iPL~~Ieki~k~ 107 (374)
++|.|.+||.++....+|-+..+ -..|+||||+|||||..... ....+ .+||..|.+++..
T Consensus 9 ~~p~L~~~E~il~~~~~V~Ly~g~~k~~~k~G~l~LTshRli~~d~~~-~~~s~-~lpl~~v~~~e~~ 74 (140)
T 2hth_B 9 TSGLLEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWRDQKN-HECCM-AILLSQIVFIEEQ 74 (140)
T ss_dssp CCSCCCTTCCEEEEEEEEEEEETTCSSCCCCEEEEEESSEEEEEETTC-CSCCE-EEEGGGEEEEEEE
T ss_pred CCCccCCCceEEEEcCCEEEecCCCCCCCcCCEEEEecCEEEEecCCC-CceEE-EEEhHHeeeeeee
Confidence 78899999999999899988643 35899999999999997643 22222 7899999998764
No 6
>3hsa_A Pleckstrin homology domain; YP_926556.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE MLY; 1.99A {Shewanella amazonensis SB2B} SCOP: b.55.1.13 PDB: 3dcx_A*
Probab=96.69 E-value=0.012 Score=49.51 Aligned_cols=100 Identities=13% Similarity=0.150 Sum_probs=68.3
Q ss_pred ccCCcCcccCCceEEEEeccEEEeCCCcceEEEEeCCeEEEEeCC--CCCceeeceeeccceeeeecccccccCCCCCCC
Q 047971 42 SHANLDLLLDAERIVVEGYGVVLVNTDEAGTLIVTNFRILFLSEG--TRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTD 119 (374)
Q Consensus 42 ~~~~~~~LLpGE~vv~~~~~V~l~~~~~~GtL~lTnyRLiF~~~~--~~~~~~l~~iPL~~Ieki~k~~~k~~s~~~~~~ 119 (374)
.+...+.|+|||+++.-= ......++.||.|||++... +.+...+.++|+.+|..+.--+ .+.-|
T Consensus 21 ~~~~~~~L~~gE~I~~ay-------k~iRD~~iFTnkRLI~vD~QG~TGkK~~~~siPY~sI~~~siET------AG~fD 87 (126)
T 3hsa_A 21 AAELSPILGDNEELQLAY-------XMVRDLFVFTSXRLILIDXQGVTGXXVSYHSIPYXAIVHFQVET------AGTFD 87 (126)
T ss_dssp HHHHGGGSCTTCCEEEEE-------ECSSEEEEEESSEEEEEEEESTTSCEEEEEEEEGGGEEEEEEEE------ESTTS
T ss_pred HHHHHHhcCCCCEEEEEe-------hhcCceEEEccchheEEecCcCcccceEEEEeccceeeEEEEec------ccccc
Confidence 355678899999997431 12368999999999999632 3445667799999999875321 01112
Q ss_pred CCCCcccEEEEecCceE-EEEeecCCchhHHHHHHHHHhh
Q 047971 120 KNPSRRLLQVIGKDMRI-VVFGFRPKTKQRRAVYDALVKC 158 (374)
Q Consensus 120 ~~~~~~~L~I~CKDfR~-l~f~F~~~~~~~~~v~~~L~~~ 158 (374)
- ...|.|.-..... +.+.|. ...+..+++..|.++
T Consensus 88 l---DaElki~isg~~~pi~~~f~-k~~di~~i~k~La~~ 123 (126)
T 3hsa_A 88 M---DAELXLWISGQHEPLVXELX-RGTDVVGIQXTIARY 123 (126)
T ss_dssp C---EEEEEEEETTCSSCEEEEEC-TTSCHHHHHHHHHHH
T ss_pred C---CceEEEEEcCCceEEEEecc-CcccHHHHHHHHHHH
Confidence 1 2357787766655 788884 455678888888664
No 7
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=96.33 E-value=0.00061 Score=70.66 Aligned_cols=65 Identities=18% Similarity=0.300 Sum_probs=0.0
Q ss_pred cCCcCcccCCceEEEEeccEEEeCC------CcceEEEEeCCeEEEEeCCCCCceeeceeeccceeeeeccc
Q 047971 43 HANLDLLLDAERIVVEGYGVVLVNT------DEAGTLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKMA 108 (374)
Q Consensus 43 ~~~~~~LLpGE~vv~~~~~V~l~~~------~~~GtL~lTnyRLiF~~~~~~~~~~l~~iPL~~Ieki~k~~ 108 (374)
-+++|.|+|+|.++....+|-|..+ -..|++|||+|||+|+.........+ .+||..|++++...
T Consensus 11 ~s~rp~L~~~E~~l~vqd~VgLY~Gk~Ki~~~q~G~~yLTShRiiyvD~~~p~~~s~-~l~L~~I~~~e~~a 81 (566)
T 1w7p_D 11 SSGQPLLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDAKPTQNSL-GLELDDLAYVNYSS 81 (566)
T ss_dssp ------------------------------------------------------------------------
T ss_pred ccCCcccCCCceEEEeecccccccCCcCCccccCceEEEEeeeEEEecCCCCcceEE-EEEhHHcceeeeee
Confidence 3489999999999988888887654 34899999999999986532221222 68999999988653
No 8
>3b77_A Uncharacterized protein; pleckstrin-homology domain, structural genomics, joint cente structural genomics, JCSG; 2.42A {Exiguobacterium sibiricum} SCOP: b.55.1.13
Probab=92.96 E-value=0.84 Score=40.73 Aligned_cols=109 Identities=16% Similarity=0.122 Sum_probs=67.8
Q ss_pred CCCCCcccCCcCcccC--CceEEEEeccEEEeCCCcceEEEEeCCeEEEEeCC--CCCceeeceeecc--ceeeeecccc
Q 047971 36 PVTSSVSHANLDLLLD--AERIVVEGYGVVLVNTDEAGTLIVTNFRILFLSEG--TRNIIALGTIPLA--AIEKLNKMAV 109 (374)
Q Consensus 36 ~~~~~~~~~~~~~LLp--GE~vv~~~~~V~l~~~~~~GtL~lTnyRLiF~~~~--~~~~~~l~~iPL~--~Ieki~k~~~ 109 (374)
.|.-|-+-.-.+-||| ||++..- +. ...-.++.||.|||++... +.+...+.++|+. +|..+.--.
T Consensus 9 ~p~D~dk~di~~~Ll~EdgE~I~~a----yk---~irD~~iFTNkRLI~vD~Qg~TGKK~~~~siPY~~~~I~~~siET- 80 (193)
T 3b77_A 9 HPDDFDKAAADDYVLHEDGEKIYFL----IK---SKTDEYCFTNLALVHLDGESAVSSKRVLYRYPYAHYPIRHVMFET- 80 (193)
T ss_dssp CGGGSTTSGGGGGSCGGGTCCEEEE----EE---CSSEEEEEESSEEEEEECCCC--CCCEEEEEETTTSCEEEEEEEC-
T ss_pred ChhhCChhhhhhhccCCCCCEEeee----ee---ecceEEEEecchhheeccccccceeEEEEEeccCCCceeEEEEEe-
Confidence 3445555566788999 9998743 11 1245899999999999632 2334566789999 998874321
Q ss_pred cccCCCCCCCCCCCcccEEEEecCceEEEEeecC-CchhHHHHHHHHHhhcCC
Q 047971 110 KIQSTPRQTDKNPSRRLLQVIGKDMRIVVFGFRP-KTKQRRAVYDALVKCATP 161 (374)
Q Consensus 110 k~~s~~~~~~~~~~~~~L~I~CKDfR~l~f~F~~-~~~~~~~v~~~L~~~~~P 161 (374)
.+..+. ...|.|.-..- .+.+.|.. +..+.++++..|..++.-
T Consensus 81 -----AGtfDl---DaElki~i~~~-~~~Ief~K~~~~di~~lyk~L~~is~~ 124 (193)
T 3b77_A 81 -----AGTVDL---DVEIKFEIGGK-HYSIDVDKKQLEHVKDLYKALLAIAEK 124 (193)
T ss_dssp -----CCSSCC---EEEEEEEETTE-EEEEEEEGGGHHHHHHHHHHHHHHHHH
T ss_pred -----cceecc---CccEEEEEcCc-eEEEEeCCcchhhHHHHHHHHHHHHHH
Confidence 111121 23466665543 45677743 245678899888776654
No 9
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=91.08 E-value=2.2 Score=34.67 Aligned_cols=91 Identities=24% Similarity=0.279 Sum_probs=57.4
Q ss_pred CceEEEEeccEEEeCCCcceEEEEeCCeEEEEeCCCCCceeeceeeccceeeeecccccccCCCCCCCCCCCcccEEEEe
Q 047971 52 AERIVVEGYGVVLVNTDEAGTLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSRRLLQVIG 131 (374)
Q Consensus 52 GE~vv~~~~~V~l~~~~~~GtL~lTnyRLiF~~~~~~~~~~l~~iPL~~Ieki~k~~~k~~s~~~~~~~~~~~~~L~I~C 131 (374)
.|+|++....|.| ....|+|+|+.=||.+.+...+.. .+ .+++..|...... |.+..| -.|+|.-
T Consensus 5 ~~~~ll~v~~v~y--KK~dGtL~l~~d~i~W~p~~~~~~-~v-s~~~~~I~~qq~S-------P~~k~K----VqLqi~l 69 (108)
T 1pfj_A 5 SEEVLLIVKKVRQ--KKQDGALYLMAERIAWAPEGKDRF-TI-SHMYADIKCQKIS-------PEGKAK----IQLQLVL 69 (108)
T ss_dssp SCCEEEEESCCBC--SSCBCEEEEETTEEEEECSSSSSC-SE-EEETTTCCCEEEC-------CSSSSS----CEEEEEC
T ss_pred chheeEEehhhee--ecCCceEEEEcceEEEccCCCCCc-eE-EEehhhhhcceeC-------CCCCcc----EEEEEEE
Confidence 4566666666655 344699999999999998655432 22 4466666543221 222222 3489999
Q ss_pred cCceEEEEeecCCc---hhHHHHHHHHHh
Q 047971 132 KDMRIVVFGFRPKT---KQRRAVYDALVK 157 (374)
Q Consensus 132 KDfR~l~f~F~~~~---~~~~~v~~~L~~ 157 (374)
+|-....|.|.... .++..|-+.|..
T Consensus 70 ~~~~~~~F~Ftn~~~a~~erd~VKd~L~~ 98 (108)
T 1pfj_A 70 HAGDTTNFHFSNESTAVKERDAVKDLLQQ 98 (108)
T ss_dssp SSSCEEEEECCCSSCTTHHHHHHHHHHHH
T ss_pred eCCCceEEEEcCcHHHHHHHHHHHHHHHH
Confidence 98899999996532 344455555554
No 10
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris}
Probab=85.86 E-value=0.57 Score=41.18 Aligned_cols=56 Identities=21% Similarity=0.239 Sum_probs=31.3
Q ss_pred cccCC--ceEEEEeccEEEe-CC--CcceEEEEeCCeEEEEeCCCCCc-eeeceeeccceee
Q 047971 48 LLLDA--ERIVVEGYGVVLV-NT--DEAGTLIVTNFRILFLSEGTRNI-IALGTIPLAAIEK 103 (374)
Q Consensus 48 ~LLpG--E~vv~~~~~V~l~-~~--~~~GtL~lTnyRLiF~~~~~~~~-~~l~~iPL~~Iek 103 (374)
..-|+ |.|.....+|.++ +. -..|+||||+=||+|.+...... +.+.+|.|..|.|
T Consensus 16 ~~~p~~~E~v~~~~~~v~~vl~~~~~g~GtLyVt~~~l~W~~~~~~G~sI~YpsIsLHAIsr 77 (171)
T 1zyi_A 16 FPPPGSAEGLRQQQPETEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPTISLHAVSR 77 (171)
T ss_dssp -----------CBCSSEEEEBTTBCCCEEEEEEETTEEEEEETTTEEEEESSCCCSEEECCS
T ss_pred CCCCCCccceEEEcCCEEEEECCCccCceEEEEEcCEEEEEcCCCcEEEeecCeEEEEEEec
Confidence 33488 8888888888775 32 24799999999999998632211 3344555666554
No 11
>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A
Probab=58.93 E-value=84 Score=26.72 Aligned_cols=89 Identities=10% Similarity=0.100 Sum_probs=54.9
Q ss_pred ccCCceEEEEeccEEEeCC--CcceEEEEe-CCeEEEEeCCCCCceeeceeeccceeeeecccccccCCCCCCCCCCCcc
Q 047971 49 LLDAERIVVEGYGVVLVNT--DEAGTLIVT-NFRILFLSEGTRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSRR 125 (374)
Q Consensus 49 LLpGE~vv~~~~~V~l~~~--~~~GtL~lT-nyRLiF~~~~~~~~~~l~~iPL~~Ieki~k~~~k~~s~~~~~~~~~~~~ 125 (374)
+++||.|+..|.=... .+ ...-.|+|| .-||+|+..... ..-+.||+..-.+++... ..
T Consensus 46 f~~ge~Ilk~G~v~Kr-kGl~~kkR~liLT~~PrL~Yvdp~~~--~~KGeIpls~~l~ve~k~---------------~~ 107 (151)
T 1w1g_A 46 FVENNLILKMGPVDKR-KGLFARRRQLLLTEGPHLYYVDPVNK--VLKGEIPWSQELRPEAKN---------------FK 107 (151)
T ss_dssp GTTTCCEEEEEEEEEE-ETTEEEEEEEEEETTTEEEEEETTTT--EEEEEECCCTTCEEEESS---------------SS
T ss_pred cCCCCcEEEEEEEEec-ccCcceeEEEEEcCCceEEEEcCccc--cccceEecCCCeeEEEcC---------------CC
Confidence 3699999988632221 11 226678888 567777754432 233568888644443210 23
Q ss_pred cEEEEecCceEEEEeecCCchhHHHHHHHHHhh
Q 047971 126 LLQVIGKDMRIVVFGFRPKTKQRRAVYDALVKC 158 (374)
Q Consensus 126 ~L~I~CKDfR~l~f~F~~~~~~~~~v~~~L~~~ 158 (374)
.+.|.|.+ |.+.|. ....++.++.++|+..
T Consensus 108 ~F~I~Tp~-RtY~~~--d~~~~AqeWv~aI~~~ 137 (151)
T 1w1g_A 108 TFFVHTPN-RTYYLM--DPSGNAHKWCRKIQEV 137 (151)
T ss_dssp EEEEEETT-EEEEEE--CTTSCHHHHHHHHHHH
T ss_pred EEEEECCC-ceEEEE--cCccCHHHHHHHHHHH
Confidence 68899999 998874 2356677888777653
No 12
>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A
Probab=54.59 E-value=22 Score=35.29 Aligned_cols=76 Identities=18% Similarity=0.185 Sum_probs=47.4
Q ss_pred CcceEEEEeCCeEEEEeCCCCCcee-------------eceeeccceeeeecccccccCCCCCCCCCCCcccEEEEecCc
Q 047971 68 DEAGTLIVTNFRILFLSEGTRNIIA-------------LGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSRRLLQVIGKDM 134 (374)
Q Consensus 68 ~~~GtL~lTnyRLiF~~~~~~~~~~-------------l~~iPL~~Ieki~k~~~k~~s~~~~~~~~~~~~~L~I~CKDf 134 (374)
...|+|.||+-+|+|.+.+.+..+. ...+++..|..|.+.. -. + ...+|+|.++|.
T Consensus 17 ~~~G~l~it~~~iyF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~~Rr---yl----l----~~~alEif~~~g 85 (414)
T 1t77_A 17 VVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRR---YL----L----QNTALEIFMANR 85 (414)
T ss_dssp EEEEEEEECSSEEEEEECTTCHHHHHSCHHHHHHCCCTTCEEEGGGEEEEEEEE---ET----T----EEEEEEEEETTS
T ss_pred ceeeEEEEeCCEEEEEeCCCcccccccccchhccccCcceEecchheeeeeeee---cc----C----cceeEEEEEcCC
Confidence 4589999999999999864322110 0135666666664321 00 0 135799999999
Q ss_pred eEEEEeecCCchhHHHHHHHH
Q 047971 135 RIVVFGFRPKTKQRRAVYDAL 155 (374)
Q Consensus 135 R~l~f~F~~~~~~~~~v~~~L 155 (374)
+.+-|.|.. .....+++..|
T Consensus 86 ~s~~l~F~~-~~~~~~~~~~l 105 (414)
T 1t77_A 86 VAVMFNFPD-PATVKKVVNFL 105 (414)
T ss_dssp CEEEEECSS-HHHHHHHHHHS
T ss_pred cEEEEEcCC-HHHHHHHHHhc
Confidence 999999953 33344454443
No 13
>1y5o_A TFB1, RNA polymerase II transcription factor B 73 kDa subunit; TFIIH, PH domain, phosphoinositides, VP16; NMR {Saccharomyces cerevisiae} SCOP: b.55.1.9 PDB: 2gs0_A 2k2u_A 2l2i_A 2lox_A*
Probab=49.87 E-value=1e+02 Score=25.02 Aligned_cols=75 Identities=20% Similarity=0.356 Sum_probs=47.5
Q ss_pred CcceEEEEeCC----eEEEEeCCCCCceeeceeeccceeeeecccccccCCCCCCCCCCCcccEEEEecC--------c-
Q 047971 68 DEAGTLIVTNF----RILFLSEGTRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSRRLLQVIGKD--------M- 134 (374)
Q Consensus 68 ~~~GtL~lTny----RLiF~~~~~~~~~~l~~iPL~~Ieki~k~~~k~~s~~~~~~~~~~~~~L~I~CKD--------f- 134 (374)
...|+|.|++= -|.+.+.+.++. ..|||..|.++-.. |.... --.|.|.-|. -
T Consensus 11 Kk~G~lti~eD~~p~~l~W~p~~g~~~---isI~l~~It~LQqT-------p~ts~----KvmLKI~~k~~~~~~~~~~~ 76 (115)
T 1y5o_A 11 KVSGIIAINEDVSPAELTWRSTDGDKV---HTVVLSTIDKLQAT-------PASSE----KMMLRLIGKVDESKKRKDNE 76 (115)
T ss_dssp SCEEEEEEECSSSSCEEEEEESSSSCE---EEEESTTCSEEEEC-------CTTCS----SEEEEEEECSCCSSSCCCCS
T ss_pred ecccEEEEccCCCcceEEEEECCCCcc---EEEEhhhhhhhhcC-------CCCCC----ceEEEEEEeccccccccCCC
Confidence 45899999998 899998655444 37899999887432 22222 2357777774 2
Q ss_pred --------eEEEEeecCCchhHHHHHHHHHh
Q 047971 135 --------RIVVFGFRPKTKQRRAVYDALVK 157 (374)
Q Consensus 135 --------R~l~f~F~~~~~~~~~v~~~L~~ 157 (374)
-.+.|.|.. -.+..+|-+.|+.
T Consensus 77 ~~~~~~~p~~~~F~Ftn-R~~~d~IKd~Lq~ 106 (115)
T 1y5o_A 77 GNEVVPKPQRHMFSFNN-RTVMDNIKMTLQQ 106 (115)
T ss_dssp SCCSSCCCEEEEEEESC-HHHHHHHHHHHHH
T ss_pred cCCCCCCcceEEEEeCC-HHHHHHHHHHHHH
Confidence 236788843 3344555555554
No 14
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=49.70 E-value=81 Score=23.76 Aligned_cols=77 Identities=16% Similarity=0.206 Sum_probs=46.4
Q ss_pred EEEeCCeEEEEeCCCCCceeeceeeccceeeeecccccccCCCCCCCCCCCcccEEEEecCceEEEEeecCCchhHHHHH
Q 047971 73 LIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSRRLLQVIGKDMRIVVFGFRPKTKQRRAVY 152 (374)
Q Consensus 73 L~lTnyRLiF~~~~~~~~~~l~~iPL~~Ieki~k~~~k~~s~~~~~~~~~~~~~L~I~CKDfR~l~f~F~~~~~~~~~v~ 152 (374)
..|++..|.|.....+. -+...|||..+..+.... ..+ ....++|.+.+-|.+.|.- ++..++.++.
T Consensus 29 fvL~~~~L~yyk~~~~~-~~~~~i~L~~~~~~~~~~---------~~~--~~~~F~i~~~~~~~~~~~a-~s~~e~~~Wi 95 (109)
T 1wgq_A 29 FVIKNKVLYTYAASEDV-AALESQPLLGFTVTLVKD---------ENS--ESKVFQLLHKGMVFYVFKA-DDAHSTQRWI 95 (109)
T ss_dssp EEEETTEEEEESCTTCS-SCSEEEECSSEEEEECCC---------SSC--SSSEEEEEETTEEEEEEEC-SSHHHHHHHH
T ss_pred EEEeCCEEEEECCCCcC-ccCceEECCCCEEEECCC---------CCC--CCcEEEEEeCCCeEEEEEC-CCHHHHHHHH
Confidence 45566666666433222 133457776665443211 000 1357899999888887765 3466788899
Q ss_pred HHHHhhcCCC
Q 047971 153 DALVKCATPA 162 (374)
Q Consensus 153 ~~L~~~~~P~ 162 (374)
.+|.....+.
T Consensus 96 ~al~~a~~~~ 105 (109)
T 1wgq_A 96 DAFQEGTVSG 105 (109)
T ss_dssp HHHHHHHSCC
T ss_pred HHHHHHhccC
Confidence 9998876653
No 15
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=39.03 E-value=1.2e+02 Score=22.79 Aligned_cols=75 Identities=15% Similarity=0.109 Sum_probs=43.6
Q ss_pred EEEEeCCeEEEEeCCCCCceeeceeeccceeeeecccccccCCCCCCCCCCCcccEEEEecCceEEEEeecCCchhHHHH
Q 047971 72 TLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSRRLLQVIGKDMRIVVFGFRPKTKQRRAV 151 (374)
Q Consensus 72 tL~lTnyRLiF~~~~~~~~~~l~~iPL~~Ieki~k~~~k~~s~~~~~~~~~~~~~L~I~CKDfR~l~f~F~~~~~~~~~v 151 (374)
-..|++-.|.|-....+. -+...|+|..+..+.... .. ......++|.+.+.|.+.|.- ++..+..++
T Consensus 25 ~fvL~~~~L~yy~~~~~~-~~~g~i~L~~~~~~~~~~---------~~-~~~~~~F~i~~~~~r~~~l~a-~s~~e~~~W 92 (113)
T 1pls_A 25 WVVLLEDGIEFYKKKSDN-SPKGMIPLKGSTLTSPCQ---------DF-GKRMFVFKITTTKQQDHFFQA-AFLEERDAW 92 (113)
T ss_dssp EEEEETTEEEEESSTTCS-SCSEEEESSSCCEESSCC---------SS-CCSSSEEEEEETTTEEEEEEC-SSHHHHHHH
T ss_pred EEEEECCEEEEEeCCCCC-CcceEEEcCCCEEEEecC---------CC-CCCccEEEEEcCCCCEEEEEC-CCHHHHHHH
Confidence 345566666665433221 233456776665442110 00 111457999999999888765 345677888
Q ss_pred HHHHHhh
Q 047971 152 YDALVKC 158 (374)
Q Consensus 152 ~~~L~~~ 158 (374)
..+|...
T Consensus 93 i~ai~~~ 99 (113)
T 1pls_A 93 VRDINKA 99 (113)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888764
No 16
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=37.33 E-value=1.4e+02 Score=22.93 Aligned_cols=78 Identities=14% Similarity=0.263 Sum_probs=45.6
Q ss_pred EEEEeCCeEEEEeCCCCCceeeceeeccceeeeecccccccCCCCCCCCCCCcccEEEEecCceEEEEeecCCchhHHHH
Q 047971 72 TLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSRRLLQVIGKDMRIVVFGFRPKTKQRRAV 151 (374)
Q Consensus 72 tL~lTnyRLiF~~~~~~~~~~l~~iPL~~Ieki~k~~~k~~s~~~~~~~~~~~~~L~I~CKDfR~l~f~F~~~~~~~~~v 151 (374)
-..|++..|.|...+.+.. +...|+|..+. +...... +.......++|.+.+-|.+.|.- ++..++.++
T Consensus 42 ~fvL~~~~L~yy~~~~~~~-~~g~i~L~~~~-v~~~~~~--------~~~~~~~~F~i~~~~~r~~~l~a-~s~~e~~~W 110 (128)
T 2dkp_A 42 WFVLSDLCLFYYRDEKEEG-ILGSILLPSFQ-IALLTSE--------DHINRKYAFKAAHPNMRTYYFCT-DTGKEMELW 110 (128)
T ss_dssp EEEEETTEEEEESSTTCCS-EEEEECGGGSE-EEECCGG--------GCCSSCSEEEEECSSSCCEEEEC-SSHHHHHHH
T ss_pred EEEEeCCEEEEECCCCCcc-cceEEEcCceE-EEEcCCc--------ccCCCCeEEEEEcCCCCEEEEEc-CCHHHHHHH
Confidence 4566777887775443322 33456665442 2111100 00011357999999989888765 346678889
Q ss_pred HHHHHhhcC
Q 047971 152 YDALVKCAT 160 (374)
Q Consensus 152 ~~~L~~~~~ 160 (374)
..+|...+.
T Consensus 111 i~al~~a~~ 119 (128)
T 2dkp_A 111 MKAMLDAAL 119 (128)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHHh
Confidence 999876543
No 17
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=31.66 E-value=2.2e+02 Score=23.55 Aligned_cols=82 Identities=11% Similarity=0.079 Sum_probs=46.7
Q ss_pred EEEeCCeEEEEeCCCCCceeeceeeccceeeeecccccccCCCCCCCCCCCcccEEEEecCceEEEEeecCCchhHHHHH
Q 047971 73 LIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSRRLLQVIGKDMRIVVFGFRPKTKQRRAVY 152 (374)
Q Consensus 73 L~lTnyRLiF~~~~~~~~~~l~~iPL~~Ieki~k~~~k~~s~~~~~~~~~~~~~L~I~CKDfR~l~f~F~~~~~~~~~v~ 152 (374)
..|++-.|.|-..+.+.....+.|+|..|..++........ ........++|...+ |.+.|.= ++..++.++.
T Consensus 41 FVL~~~~L~Yyk~~~~~~~~~G~I~L~~~~~v~~~~~~~~~-----~~~~~~~~f~i~t~~-rt~~l~A-~s~~e~~~Wi 113 (164)
T 2lul_A 41 FVLTKSMLTYYEGRAEKKYRKGFIDVSKIKCVEIVKNDDGV-----IPCQNKYPFQVVHDA-NTLYIFA-PSPQSRDLWV 113 (164)
T ss_dssp EEEESSEEEEECCCSSSCCCCCEEEGGGCCEEEECCCCSSS-----CCSSSCSEEEEECSS-CEEEEEC-SSHHHHHHHH
T ss_pred EEEECCEEEEEeccCcccccccEEEEeeeEEEEeccccccC-----cccccceeEEEecCC-cEEEEEC-CCHHHHHHHH
Confidence 56778888776433322223346788777666543211100 001113457787776 6666542 4466788999
Q ss_pred HHHHhhcCC
Q 047971 153 DALVKCATP 161 (374)
Q Consensus 153 ~~L~~~~~P 161 (374)
++|.+....
T Consensus 114 ~aL~~~i~~ 122 (164)
T 2lul_A 114 KKLKEEIKN 122 (164)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 999886554
No 18
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=30.85 E-value=1.6e+02 Score=21.59 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=25.6
Q ss_pred cccEEEEecCceEEEEeecCCchhHHHHHHHHHhh
Q 047971 124 RRLLQVIGKDMRIVVFGFRPKTKQRRAVYDALVKC 158 (374)
Q Consensus 124 ~~~L~I~CKDfR~l~f~F~~~~~~~~~v~~~L~~~ 158 (374)
...++|.+.+-|.+.|.- ++..++.++..+|...
T Consensus 70 ~~~F~i~~~~~r~~~l~a-~s~~e~~~Wi~ai~~~ 103 (108)
T 1u5d_A 70 ESCFELTSQDRRTYEFTA-TSPAEARDWVDQISFL 103 (108)
T ss_dssp GGEEEEECSSSCCEEEEC-SSHHHHHHHHHHHHHH
T ss_pred cceEEEEcCCCcEEEEEC-CCHHHHHHHHHHHHHH
Confidence 357999999989888865 4456777888877653
No 19
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=28.20 E-value=2.1e+02 Score=22.82 Aligned_cols=34 Identities=12% Similarity=0.019 Sum_probs=26.0
Q ss_pred cccEEEEecCceEEEEeecCCchhHHHHHHHHHhh
Q 047971 124 RRLLQVIGKDMRIVVFGFRPKTKQRRAVYDALVKC 158 (374)
Q Consensus 124 ~~~L~I~CKDfR~l~f~F~~~~~~~~~v~~~L~~~ 158 (374)
...++|.+.|.|.+.|.- +...+..++..+|.+.
T Consensus 89 ~~~F~i~~~~~r~~~l~A-~s~~e~~~Wi~al~~a 122 (150)
T 1wg7_A 89 RFAFELKMQDKSSYLLAA-DSEVEMEEWITILNKI 122 (150)
T ss_dssp TTEEEEECSSSCEEEEEC-SSHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCcEEEEEe-CCHHHHHHHHHHHHHH
Confidence 357999999989888865 3456778888888764
No 20
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=27.80 E-value=1.7e+02 Score=22.42 Aligned_cols=35 Identities=23% Similarity=0.214 Sum_probs=26.7
Q ss_pred cccEEEEecCceEEEEeecCCchhHHHHHHHHHhhc
Q 047971 124 RRLLQVIGKDMRIVVFGFRPKTKQRRAVYDALVKCA 159 (374)
Q Consensus 124 ~~~L~I~CKDfR~l~f~F~~~~~~~~~v~~~L~~~~ 159 (374)
...++|.+.+-|.+.|.- ++..+..++..+|....
T Consensus 89 ~~~F~I~~~~~r~~~l~a-~s~~e~~~Wi~al~~~~ 123 (129)
T 1x1g_A 89 GNLFKVITKDDTHYYIQA-SSKAERAEWIEAIKKLT 123 (129)
T ss_dssp SSCEEECCTTCCCEEECC-SSHHHHHHHHHHHHHHS
T ss_pred CceEEEEcCCCCEEEEEc-CCHHHHHHHHHHHHHHH
Confidence 357999999988777754 34567888999998754
No 21
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.30 E-value=2e+02 Score=21.72 Aligned_cols=77 Identities=16% Similarity=0.323 Sum_probs=44.3
Q ss_pred EEEEeCCeEEEEeCCCCCceeeceeeccceeeeecccccccCCCCCCCCCCCcccEEEEecCceEEEEeecCCchhHHHH
Q 047971 72 TLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSRRLLQVIGKDMRIVVFGFRPKTKQRRAV 151 (374)
Q Consensus 72 tL~lTnyRLiF~~~~~~~~~~l~~iPL~~Ieki~k~~~k~~s~~~~~~~~~~~~~L~I~CKDfR~l~f~F~~~~~~~~~v 151 (374)
-..|++..|.|...+.+. -+...|+|..+. +.... +. +.......++|.+.+-|.+.|.- ++..+..++
T Consensus 43 ~fvL~~~~L~yy~~~~~~-~~~g~i~L~~~~-v~~~~------~~--~~~~~~~~F~i~~~~~r~~~l~a-~s~~e~~~W 111 (122)
T 2yry_A 43 WFVLVDRCLFYYKDEKEE-SILGSIPLLSFR-VAAVQ------PS--DNISRKHTFKAEHAGVRTYFFSA-ESPEEQEAW 111 (122)
T ss_dssp EEEEETTEEEEESSTTCC-SCCEEEESTTCC-CEECC------TT--CSCSSSSEEEEECSSSCEEEEEC-SSHHHHHHH
T ss_pred EEEEeCCEEEEECCCCCC-CcccEEEcCCCE-EEEcC------cc--ccCCcccEEEEecCCCcEEEEEc-CCHHHHHHH
Confidence 455677777776543322 123456666543 22110 00 00111357889888889988876 345678888
Q ss_pred HHHHHhhc
Q 047971 152 YDALVKCA 159 (374)
Q Consensus 152 ~~~L~~~~ 159 (374)
..+|....
T Consensus 112 i~al~~a~ 119 (122)
T 2yry_A 112 IQAMGEAA 119 (122)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887653
No 22
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=26.33 E-value=2.1e+02 Score=21.54 Aligned_cols=70 Identities=20% Similarity=0.309 Sum_probs=43.1
Q ss_pred EEEEeCCeEEEEeCCCCCceeeceeeccceeeeecccccccCCCCCCCCCCCcccEEEEecCceEEEEeecCCchhHHHH
Q 047971 72 TLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSRRLLQVIGKDMRIVVFGFRPKTKQRRAV 151 (374)
Q Consensus 72 tL~lTnyRLiF~~~~~~~~~~l~~iPL~~Ieki~k~~~k~~s~~~~~~~~~~~~~L~I~CKDfR~l~f~F~~~~~~~~~v 151 (374)
-..|++-.|.|.....+. -+...|+|..+..|.... ...++|.+ .-|.+.|.- ++..++.++
T Consensus 29 ~fvL~~~~L~yy~~~~~~-~~~g~i~l~~~~~v~~~~---------------~~~F~i~~-~~r~~~l~a-~s~~e~~~W 90 (115)
T 2cod_A 29 WVKFDGLSISYYNNEKEM-YSKGIIPLSAISTVRVQG---------------DNKFEVVT-TQRTFVFRV-EKEEERNDW 90 (115)
T ss_dssp EEEECSSEEEEEESSCCS-SCCCEEETTTEEEEEEET---------------TTEEEEEE-SSCCEEEEC-SSHHHHHHH
T ss_pred EEEEECCEEEEEcCCCCc-ccCCEEECCcceEEEeCC---------------CCEEEEEe-CCcEEEEEC-CCHHHHHHH
Confidence 455667777776544332 234568888877664321 23577774 567777754 345678888
Q ss_pred HHHHHhhc
Q 047971 152 YDALVKCA 159 (374)
Q Consensus 152 ~~~L~~~~ 159 (374)
..+|....
T Consensus 91 i~~l~~~~ 98 (115)
T 2cod_A 91 ISILLNAL 98 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887654
No 23
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=25.30 E-value=2.5e+02 Score=23.39 Aligned_cols=86 Identities=13% Similarity=0.130 Sum_probs=46.1
Q ss_pred EEEeCCeEEEEeCC---CCCceeeceeeccceeeeecccc------ccc-CCCCCCCCCCC--------cccEEEEecCc
Q 047971 73 LIVTNFRILFLSEG---TRNIIALGTIPLAAIEKLNKMAV------KIQ-STPRQTDKNPS--------RRLLQVIGKDM 134 (374)
Q Consensus 73 L~lTnyRLiF~~~~---~~~~~~l~~iPL~~Ieki~k~~~------k~~-s~~~~~~~~~~--------~~~L~I~CKDf 134 (374)
..||+..|.|.-.+ ....-..+.|||..+..++.... +.. ......+.... ...++|...+
T Consensus 29 FVL~~~~L~Yyk~~~~~~~~~~~~G~I~L~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~F~I~t~~- 107 (169)
T 1btk_A 29 FLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVETVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDE- 107 (169)
T ss_dssp EEECSSEEEEEEEETTTTEEEEEEEEEEGGGEEEEEECCCCSSCCGGGCC---------CCTTHHHHCCCEEEEEEETT-
T ss_pred EEEcCCEEEEEecCCccCCCCceeeEEECcceEEEEeccCCCCcchhcccccccCcccccccccccccccccEEEEeCC-
Confidence 56778888777542 12223456788888766554310 000 00000000000 0468888877
Q ss_pred eEEEEeecCCchhHHHHHHHHHhhcC
Q 047971 135 RIVVFGFRPKTKQRRAVYDALVKCAT 160 (374)
Q Consensus 135 R~l~f~F~~~~~~~~~v~~~L~~~~~ 160 (374)
|.+.|.- ++..+..++.++|.+...
T Consensus 108 rt~yl~A-~s~~E~~eWi~aI~~~i~ 132 (169)
T 1btk_A 108 GPLYVFS-PTEELRKRWIHQLKNVIR 132 (169)
T ss_dssp CCEEEEE-SCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEc-CCHHHHHHHHHHHHHHHH
Confidence 5555543 456788899999987654
No 24
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.10 E-value=2.2e+02 Score=21.30 Aligned_cols=78 Identities=15% Similarity=0.318 Sum_probs=44.9
Q ss_pred EEEEeCCeEEEEeCCCCCceeeceeeccceeeeecccccccCCCCCCCCCCCcccEEEEecCceEEEEeecCCchhHHHH
Q 047971 72 TLIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSRRLLQVIGKDMRIVVFGFRPKTKQRRAV 151 (374)
Q Consensus 72 tL~lTnyRLiF~~~~~~~~~~l~~iPL~~Ieki~k~~~k~~s~~~~~~~~~~~~~L~I~CKDfR~l~f~F~~~~~~~~~v 151 (374)
-..|++..|.|...+.+. -+...|+|..+. +.... +. +.......++|.+.+-|.+.|.- ++..++.++
T Consensus 32 ~fvL~~~~L~yy~~~~~~-~~~g~i~L~~~~-v~~~~------~~--~~~~~~~~F~i~~~~~r~~~l~a-~s~~e~~~W 100 (117)
T 2d9y_A 32 WFVLVDRCLFYYKDEKEE-SILGSIPLLSFR-VAAVQ------PS--DNISRKHTFKAEHAGVRTYFFSA-ESPEEQEAW 100 (117)
T ss_dssp EEEEETTEEEEESSTTCC-SCCEEEECSSCE-EEECC------TT--TTCCCSSEEEEECSSSCEEEEEC-SSHHHHHHH
T ss_pred EEEECCCEEEEECCCCCC-CcCCEEEeCCeE-EEEcC------cc--ccCCCccEEEEEcCCCcEEEEEc-CCHHHHHHH
Confidence 455677777776443322 223456666543 21110 00 00111357889888889988865 446678889
Q ss_pred HHHHHhhcC
Q 047971 152 YDALVKCAT 160 (374)
Q Consensus 152 ~~~L~~~~~ 160 (374)
..+|.....
T Consensus 101 i~al~~~~~ 109 (117)
T 2d9y_A 101 IQAMGEAAR 109 (117)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHHh
Confidence 999887543
No 25
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=22.67 E-value=3.2e+02 Score=22.43 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=25.3
Q ss_pred ccEEEEecCceEEEEeecCCchhHHHHHHHHHhh
Q 047971 125 RLLQVIGKDMRIVVFGFRPKTKQRRAVYDALVKC 158 (374)
Q Consensus 125 ~~L~I~CKDfR~l~f~F~~~~~~~~~v~~~L~~~ 158 (374)
..|.++..+.++.=+-|- +..+|.++++.|.++
T Consensus 98 ~~li~r~~~~~I~GiWf~-~~~d~~~i~~~l~~l 130 (134)
T 2lyd_A 98 PFLLYRNERSRIRGFWFY-NSEECDRISGLVNGL 130 (134)
T ss_dssp TEEEEEEGGGEEEEEEES-SHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCcEEEEEec-ChHHHHHHHHHHHHH
Confidence 357788888888878773 467889999888765
No 26
>2qkl_A DCP1 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} PDB: 2qkm_A*
Probab=21.39 E-value=3.3e+02 Score=22.13 Aligned_cols=32 Identities=6% Similarity=0.106 Sum_probs=25.5
Q ss_pred cEEEEecCceEEEEeecCCchhHHHHHHHHHhh
Q 047971 126 LLQVIGKDMRIVVFGFRPKTKQRRAVYDALVKC 158 (374)
Q Consensus 126 ~L~I~CKDfR~l~f~F~~~~~~~~~v~~~L~~~ 158 (374)
.|.++..+..+.-+-|- +..+|..+++.|.++
T Consensus 93 ~l~~r~~~~~i~GiWf~-~~~d~~~i~~~l~~l 124 (127)
T 2qkl_A 93 YLIHRTENQHVVGLWMF-DPNDMSRIFNIVKES 124 (127)
T ss_dssp EEEEEETTTEEEEEEES-STHHHHHHHHHHHHH
T ss_pred EEEEEcCCCcEEEEEEE-chHHHHHHHHHHHHH
Confidence 57788888888888884 467899999888765
No 27
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=20.88 E-value=30 Score=32.11 Aligned_cols=105 Identities=12% Similarity=0.100 Sum_probs=65.6
Q ss_pred ccchHHHHHhhhcccCCCcceEEeeecCCCceEEeccCcccccccCCCChHHHHHHHHHHHhccCCCCCCCcEEEEcCCc
Q 047971 242 CIIDQELLQASSFRARYRLPVISWCHSGTGAVLARSSQPLVGLMMNMRSNADEKLVASLCTQLAGGKMSRRKLYIADARP 321 (374)
Q Consensus 242 ~i~d~~l~~~a~fRs~~R~Pv~sw~h~~~~a~L~RssqP~~G~~~~~r~~~De~ll~~i~~~~~~~~~~~~~l~I~D~R~ 321 (374)
..+++++...-. ....++|-....+...| .+=.+|+..++.++.... .+.|+.+|.|.
T Consensus 106 ~~s~~ei~~~l~-~al~~vP~a~GvnNHmG----------------S~~T~~~~~M~~vm~~L~-----~~gL~FlDS~T 163 (261)
T 2qv5_A 106 GDPAKVNIDRLH-RSMAKITNYTGVMNYLG----------------GRFLAEQSALEPVMRDIG-----KRGLLFLDDGS 163 (261)
T ss_dssp TSCHHHHHHHHH-HHHTTCCCCSEEEEEEC----------------TTGGGCHHHHHHHHHHHH-----HTTCEEEECSC
T ss_pred CCCHHHHHHHHH-HHHHHCCCcEEEecccc----------------cchhcCHHHHHHHHHHHH-----HCCCEEEcCCC
Confidence 456666654333 22477888777753222 344567777766654431 35689999998
Q ss_pred chhHHhhc-cCCCCCcCCCCCCCceEEEcC-CCChHHHHHHHHHHHHHHhhcCC
Q 047971 322 RKNALANG-AMGGGSESSSNYFQSEIVFFG-IDNIHAMRESFARLRDYLDTHGT 373 (374)
Q Consensus 322 ~~nA~an~-a~G~G~E~~~~Y~~~~~~f~~-I~NIH~mr~S~~kl~~~~~~~g~ 373 (374)
..+.+|-+ |+..|.-... +-+|++ ..+.-.||.-|.++......+|.
T Consensus 164 s~~S~a~~~A~~~gvp~~~-----rdvFLD~~~~~~~I~~qL~~a~~~Ar~~G~ 212 (261)
T 2qv5_A 164 SAQSLSGGIAKAISAPQGF-----ADVLLDGEVTEASILRKLDDLERIARRNGQ 212 (261)
T ss_dssp CTTCCHHHHHHHHTCCEEE-----CSEETTSSCSHHHHHHHHHHHHHHHHHHSE
T ss_pred CcccHHHHHHHHcCCCeEE-----eeeecCCCCCHHHHHHHHHHHHHHHHhcCc
Confidence 66655433 3444443211 236765 45578999999999999998885
No 28
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.74 E-value=2.6e+02 Score=20.71 Aligned_cols=73 Identities=12% Similarity=0.104 Sum_probs=40.3
Q ss_pred EEEeCCeEEEEeCCCCCceeeceeeccceeeeecccccccCCCCCCCCCCCcccEEEEecCceEEEEeecCCchhHHHHH
Q 047971 73 LIVTNFRILFLSEGTRNIIALGTIPLAAIEKLNKMAVKIQSTPRQTDKNPSRRLLQVIGKDMRIVVFGFRPKTKQRRAVY 152 (374)
Q Consensus 73 L~lTnyRLiF~~~~~~~~~~l~~iPL~~Ieki~k~~~k~~s~~~~~~~~~~~~~L~I~CKDfR~l~f~F~~~~~~~~~v~ 152 (374)
..|++-.|.|.....+. -+...|+|..+..+..... . ......++|.+.+ |.+.|.- ++..++.++.
T Consensus 29 fvL~~~~L~yy~~~~~~-~~~g~i~L~~~~~v~~~~~-------~---~~~~~~F~i~~~~-r~~~l~a-~s~~e~~~Wi 95 (115)
T 2dn6_A 29 FVLKPNIISYYVSEDLK-DKKGDILLDENCCVESLPD-------K---DGKKCLFLVKCFD-KTFEISA-SDKKKKQEWI 95 (115)
T ss_dssp EEECSSCEEEESSTTCS-SEEEEECCCTTCEEEEECC-------C---TTCCSEEEEECSS-CEEEEEC-SSHHHHHHHH
T ss_pred EEEECCEEEEeCCCCCc-ccCcEEEecCcEEEEECCC-------C---CCCeeEEEEEeCC-CEEEEEc-CCHHHHHHHH
Confidence 45556666666443322 2344677776655543210 0 0113568887764 7776654 3456677888
Q ss_pred HHHHhh
Q 047971 153 DALVKC 158 (374)
Q Consensus 153 ~~L~~~ 158 (374)
.+|...
T Consensus 96 ~ai~~~ 101 (115)
T 2dn6_A 96 QAIHST 101 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777653
Done!