BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047972
(273 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS8|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
Length = 109
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 71 VGGKNGLWVVKPYENYNHWAERMRFQVNDSLYFKYKKGSDSVLVVTKDDYFSCNNKKPVQ 130
VG G + PY+ Y WA +F V DSL F Y +VL V ++ + SCN+ P
Sbjct: 7 VGDSTGWTTLVPYD-YAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAA 65
Query: 131 SLTDGESVFSFDHSGPYFFISGNADNCNKGQKLIVVV 167
S T G G ++F+ G +C GQK+ + V
Sbjct: 66 SYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 102
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9R|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9U|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
pdb|1X9U|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
Length = 116
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%)
Query: 86 YNHWAERMRFQVNDSLYFKYKKGSDSVLVVTKDDYFSCNNKKPVQSLTDGESVFSFDHSG 145
Y WA F+V D L F + G V VVTKD + +C + P+ +T + +G
Sbjct: 21 YITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPISHMTTPPVKIMLNTTG 80
Query: 146 PYFFISGNADNCNKGQKLIVVVM 168
P ++I D+C GQKL + V+
Sbjct: 81 PQYYICTVGDHCRVGQKLSINVV 103
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0
Length = 138
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
Query: 73 GKNGLWVVKPYEN-YNHWAERMRFQVNDSLYFKYKKGSDSV-LVVTKDDYFSCNNKKPVQ 130
G N W V N Y+ WA F+V DSL F + + +V + TK + +CN V
Sbjct: 9 GDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACN---FVN 65
Query: 131 SLTDGES----VFSFDHSGPYFFISGNADNCNKGQKLIVVVMAV 170
S D E + D G ++F+ +C+ GQKL + V+A
Sbjct: 66 SDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINVVAA 109
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein
Length = 96
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 73 GKNGLWVVKPYENYNHWAERMRFQVNDSLYFKYKKGSDSVLVVTKDDYFSCNNKKPVQSL 132
G +G W N W + RF+ D L F Y +V+VV + + +CN +
Sbjct: 6 GGSGGWTF----NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVY 61
Query: 133 TDGESVFSFDHSGPYFFISGNADNCNKGQKLIV 165
T G G +FI +C G K+ V
Sbjct: 62 TSGRDQIKLP-KGQSYFICNFPGHCQSGMKIAV 93
>pdb|1F56|A Chain A, Spinach Plantacyanin
pdb|1F56|B Chain B, Spinach Plantacyanin
pdb|1F56|C Chain C, Spinach Plantacyanin
Length = 91
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 90 AERMRFQVNDSLYFKYKKGSDSVLVVTKDDYFSCNNKKPVQSLTDGESVFSFDHSGPYFF 149
A F+ D L FKY KG +V+ V Y SC+ + ++ + G+ G +F
Sbjct: 14 ARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLTR-GQNYF 72
Query: 150 ISGNADNCNKGQKLIV 165
I +C G K+ +
Sbjct: 73 ICSFPGHCGGGMKIAI 88
>pdb|1YHP|A Chain A, Solution Structure Of Ca2+-Free Ddcad-1
pdb|2B1O|A Chain A, Solution Structure Of Ca2+-Bound Ddcad-1
Length = 212
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 95 FQVNDSLYFKYKKGSDSVLVVTKDDYFSCN 124
+ VN S+YFKY + V V+ KD+ F N
Sbjct: 164 YVVNGSVYFKYSPTTGQVTVIKKDETFPKN 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,557,421
Number of Sequences: 62578
Number of extensions: 252485
Number of successful extensions: 395
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 6
length of query: 273
length of database: 14,973,337
effective HSP length: 97
effective length of query: 176
effective length of database: 8,903,271
effective search space: 1566975696
effective search space used: 1566975696
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)