Query 047972
Match_columns 273
No_of_seqs 154 out of 837
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 05:03:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047972.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047972hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03148 Blue copper-like prot 100.0 5.2E-41 1.1E-45 291.3 13.2 106 59-168 13-118 (167)
2 PF02298 Cu_bind_like: Plastoc 100.0 6.3E-31 1.4E-35 204.8 4.4 84 78-161 1-85 (85)
3 PRK02710 plastocyanin; Provisi 98.9 1.5E-08 3.4E-13 82.8 11.4 92 62-168 24-119 (119)
4 TIGR02656 cyanin_plasto plasto 98.7 2E-07 4.4E-12 73.7 9.4 90 68-168 2-99 (99)
5 PF00127 Copper-bind: Copper b 98.6 1.2E-07 2.7E-12 74.7 7.4 75 92-168 18-99 (99)
6 COG3794 PetE Plastocyanin [Ene 98.5 1.3E-06 2.8E-11 73.7 10.2 85 68-168 39-127 (128)
7 TIGR03102 halo_cynanin halocya 98.5 1.3E-06 2.9E-11 72.1 9.7 89 65-168 22-115 (115)
8 TIGR02375 pseudoazurin pseudoa 98.1 1.7E-05 3.6E-10 65.7 9.2 74 92-170 16-89 (116)
9 TIGR02657 amicyanin amicyanin. 97.5 0.00054 1.2E-08 52.5 8.1 70 92-168 12-83 (83)
10 TIGR03095 rusti_cyanin rusticy 97.1 0.0026 5.6E-08 54.5 7.9 72 94-168 55-148 (148)
11 PF13473 Cupredoxin_1: Cupredo 96.7 0.0019 4.1E-08 51.0 3.8 63 92-167 36-104 (104)
12 PF06525 SoxE: Sulfocyanin (So 96.5 0.014 3.1E-07 52.7 8.4 79 94-172 89-190 (196)
13 COG4454 Uncharacterized copper 95.1 0.17 3.7E-06 44.5 9.0 77 91-168 63-157 (158)
14 TIGR03094 sulfo_cyanin sulfocy 95.1 0.13 2.7E-06 46.5 8.4 32 140-171 157-188 (195)
15 TIGR03096 nitroso_cyanin nitro 93.7 0.18 4E-06 43.2 6.0 57 91-158 61-123 (135)
16 TIGR02695 azurin azurin. Azuri 93.5 0.72 1.6E-05 39.2 9.2 33 133-166 86-124 (125)
17 PF00812 Ephrin: Ephrin; Inte 93.1 0.12 2.7E-06 44.5 4.0 75 94-168 25-144 (145)
18 KOG3858 Ephrin, ligand for Eph 91.8 0.77 1.7E-05 42.7 7.8 78 94-172 46-164 (233)
19 PRK10378 inactive ferrous ion 91.8 0.85 1.8E-05 45.0 8.5 28 138-170 91-118 (375)
20 PLN02604 oxidoreductase 90.4 2 4.4E-05 44.0 10.0 79 92-171 56-146 (566)
21 TIGR02376 Cu_nitrite_red nitri 88.0 1.6 3.5E-05 41.4 6.9 76 93-171 61-148 (311)
22 PRK02888 nitrous-oxide reducta 86.8 2.4 5.2E-05 44.6 7.8 67 92-169 556-634 (635)
23 PLN02354 copper ion binding / 84.9 7.2 0.00016 40.1 10.1 72 93-171 60-148 (552)
24 PF07732 Cu-oxidase_3: Multico 83.8 0.74 1.6E-05 37.6 2.0 76 92-170 27-116 (117)
25 PLN02835 oxidoreductase 83.5 8.4 0.00018 39.5 9.8 74 93-169 62-148 (539)
26 KOG3671 Actin regulatory prote 80.1 11 0.00023 39.1 8.9 19 135-153 277-295 (569)
27 PLN00044 multi-copper oxidase- 79.6 10 0.00022 39.6 8.9 75 93-171 62-150 (596)
28 KOG1923 Rac1 GTPase effector F 79.6 8.3 0.00018 41.5 8.3 18 23-40 34-51 (830)
29 TIGR02866 CoxB cytochrome c ox 78.5 6.5 0.00014 34.9 6.3 67 92-170 118-193 (201)
30 COG1622 CyoA Heme/copper-type 78.5 6 0.00013 36.9 6.3 32 138-171 180-214 (247)
31 PF07172 GRP: Glycine rich pro 77.3 1.3 2.8E-05 35.7 1.4 8 40-47 1-8 (95)
32 PF00116 COX2: Cytochrome C ox 76.3 4.8 0.0001 33.2 4.5 66 92-168 47-120 (120)
33 TIGR03388 ascorbase L-ascorbat 75.6 8.1 0.00018 39.4 6.8 76 93-171 34-123 (541)
34 KOG3671 Actin regulatory prote 71.5 21 0.00045 37.0 8.4 11 29-39 129-139 (569)
35 TIGR01480 copper_res_A copper- 68.2 17 0.00036 37.9 7.2 73 93-169 78-162 (587)
36 TIGR01480 copper_res_A copper- 68.1 17 0.00038 37.7 7.3 84 78-167 488-586 (587)
37 PLN02168 copper ion binding / 66.2 49 0.0011 34.2 10.0 79 93-171 59-147 (545)
38 KOG0559 Dihydrolipoamide succi 61.9 1.3E+02 0.0028 30.5 11.6 20 149-168 129-148 (457)
39 MTH00047 COX2 cytochrome c oxi 61.7 11 0.00024 33.8 4.0 32 138-171 159-193 (194)
40 PLN02991 oxidoreductase 60.2 61 0.0013 33.5 9.4 78 93-170 61-148 (543)
41 PF02839 CBM_5_12: Carbohydrat 59.4 5.3 0.00011 26.5 1.2 19 86-104 1-19 (41)
42 TIGR02228 sigpep_I_arch signal 58.8 24 0.00051 30.6 5.4 25 92-116 58-86 (158)
43 cd06555 ASCH_PF0470_like ASC-1 56.7 9.7 0.00021 31.5 2.5 16 92-107 29-44 (109)
44 PF02362 B3: B3 DNA binding do 51.3 11 0.00024 28.6 2.0 23 88-110 67-89 (100)
45 PF00686 CBM_20: Starch bindin 48.0 24 0.00052 27.2 3.4 41 67-107 17-68 (96)
46 PLN02191 L-ascorbate oxidase 47.3 54 0.0012 34.0 6.7 75 93-170 56-144 (574)
47 KOG2315 Predicted translation 46.4 36 0.00077 35.6 5.2 64 88-151 208-277 (566)
48 PF07731 Cu-oxidase_2: Multico 44.8 29 0.00064 27.8 3.6 32 138-169 105-136 (138)
49 cd05810 CBM20_alpha_MTH Glucan 43.4 15 0.00032 29.0 1.5 40 68-107 18-64 (97)
50 MTH00140 COX2 cytochrome c oxi 43.1 32 0.00069 31.3 3.9 31 138-170 183-216 (228)
51 TIGR03389 laccase laccase, pla 42.5 87 0.0019 32.0 7.3 75 93-171 36-124 (539)
52 PRK10861 signal peptidase I; P 41.9 1E+02 0.0022 30.0 7.3 15 93-107 124-138 (324)
53 KOG3342 Signal peptidase I [In 41.7 93 0.002 27.9 6.4 22 94-115 77-102 (180)
54 PRK09723 putative fimbrial-lik 41.6 2.8E+02 0.0061 28.2 10.5 45 63-114 24-69 (421)
55 cd05808 CBM20_alpha_amylase Al 41.1 20 0.00043 27.3 1.9 39 68-106 17-62 (95)
56 PF10377 ATG11: Autophagy-rela 39.5 45 0.00097 28.1 4.0 19 93-111 41-59 (129)
57 PLN02792 oxidoreductase 39.2 1.1E+02 0.0023 31.6 7.4 75 93-170 49-136 (536)
58 KOG1923 Rac1 GTPase effector F 36.7 74 0.0016 34.7 5.9 18 14-34 83-100 (830)
59 PF04014 Antitoxin-MazE: Antid 36.5 23 0.00049 24.3 1.4 33 70-108 2-34 (47)
60 PF12961 DUF3850: Domain of Un 36.4 20 0.00044 27.8 1.3 13 92-104 26-38 (72)
61 MTH00154 COX2 cytochrome c oxi 35.7 49 0.0011 30.3 3.9 31 138-170 183-216 (227)
62 MTH00168 COX2 cytochrome c oxi 34.8 46 0.00099 30.3 3.6 31 138-170 183-216 (225)
63 PTZ00047 cytochrome c oxidase 34.5 52 0.0011 29.2 3.7 30 138-169 116-148 (162)
64 TIGR01433 CyoA cytochrome o ub 34.0 49 0.0011 30.3 3.6 31 138-170 182-215 (226)
65 MTH00129 COX2 cytochrome c oxi 33.9 44 0.00096 30.6 3.3 31 138-170 183-216 (230)
66 PF09451 ATG27: Autophagy-rela 33.8 45 0.00097 31.0 3.4 26 63-91 220-245 (268)
67 cd05820 CBM20_novamyl Novamyl 33.4 27 0.00058 27.7 1.6 41 67-107 20-70 (103)
68 MTH00139 COX2 cytochrome c oxi 33.3 52 0.0011 29.9 3.7 31 138-170 183-216 (226)
69 MTH00117 COX2 cytochrome c oxi 33.0 52 0.0011 30.1 3.6 31 138-170 183-216 (227)
70 PLN02792 oxidoreductase 32.6 2.7E+02 0.0059 28.8 9.0 79 94-172 406-508 (536)
71 PHA03291 envelope glycoprotein 32.5 2.1E+02 0.0045 28.8 7.8 20 253-272 288-307 (401)
72 MTH00038 COX2 cytochrome c oxi 32.0 56 0.0012 29.9 3.7 31 138-170 183-216 (229)
73 MTH00098 COX2 cytochrome c oxi 31.9 58 0.0013 29.9 3.7 31 138-170 183-216 (227)
74 PF05382 Amidase_5: Bacterioph 31.4 91 0.002 27.0 4.7 34 93-126 74-112 (145)
75 KOG1263 Multicopper oxidases [ 31.2 4.8E+02 0.01 27.4 10.6 75 93-172 61-150 (563)
76 TIGR01432 QOXA cytochrome aa3 31.0 59 0.0013 29.3 3.6 31 138-170 173-206 (217)
77 cd05816 CBM20_DPE2_repeat2 Dis 29.6 41 0.0009 26.3 2.1 40 67-106 16-63 (99)
78 PF09792 But2: Ubiquitin 3 bin 29.5 1.9E+02 0.0042 24.7 6.3 32 138-172 100-131 (143)
79 MTH00023 COX2 cytochrome c oxi 29.2 69 0.0015 29.6 3.8 31 138-170 194-227 (240)
80 PRK13838 conjugal transfer pil 29.1 65 0.0014 28.4 3.4 15 92-106 48-62 (176)
81 TIGR01165 cbiN cobalt transpor 28.5 37 0.0008 27.6 1.6 9 84-92 49-57 (91)
82 cd05807 CBM20_CGTase CGTase, C 27.7 33 0.00072 26.9 1.3 41 67-107 19-70 (101)
83 MTH00008 COX2 cytochrome c oxi 27.0 78 0.0017 29.0 3.7 31 138-170 183-216 (228)
84 cd05467 CBM20 The family 20 ca 25.9 60 0.0013 24.5 2.4 39 68-106 16-64 (96)
85 MTH00051 COX2 cytochrome c oxi 24.9 75 0.0016 29.2 3.2 31 138-170 187-220 (234)
86 PF03276 Gag_spuma: Spumavirus 24.8 3.7E+02 0.008 28.5 8.3 13 65-78 27-39 (582)
87 PRK14948 DNA polymerase III su 24.5 5E+02 0.011 27.4 9.4 10 160-169 503-512 (620)
88 MTH00076 COX2 cytochrome c oxi 24.3 82 0.0018 28.8 3.3 31 138-170 183-216 (228)
89 PRK11372 lysozyme inhibitor; P 23.6 4.1E+02 0.009 21.7 7.2 36 98-137 50-88 (109)
90 PF11604 CusF_Ec: Copper bindi 23.5 57 0.0012 24.4 1.8 25 87-111 35-59 (70)
91 PF07174 FAP: Fibronectin-atta 23.4 5.6E+02 0.012 24.9 8.7 84 175-258 43-129 (297)
92 MTH00027 COX2 cytochrome c oxi 22.6 1.1E+02 0.0024 28.9 3.8 31 138-170 217-250 (262)
93 KOG1263 Multicopper oxidases [ 22.5 1.3E+02 0.0028 31.5 4.7 43 131-173 497-541 (563)
94 smart00495 ChtBD3 Chitin-bindi 22.0 50 0.0011 21.8 1.1 18 86-103 1-18 (41)
95 cd05813 CBM20_genethonin_1 Gen 22.0 70 0.0015 24.6 2.1 38 69-106 19-61 (95)
96 PF06462 Hyd_WA: Propeller; I 22.0 1.6E+02 0.0034 19.0 3.4 26 137-162 2-27 (32)
97 PHA03378 EBNA-3B; Provisional 21.6 3.3E+02 0.0072 29.9 7.4 7 28-34 505-511 (991)
98 cd05817 CBM20_DSP Dual-specifi 21.5 80 0.0017 24.7 2.4 39 68-106 16-61 (100)
99 COG3627 PhnJ Uncharacterized e 21.3 56 0.0012 30.8 1.6 24 137-160 257-280 (291)
100 PRK13914 invasion associated s 21.3 66 0.0014 33.1 2.3 44 61-104 22-72 (481)
101 KOG1830 Wiskott Aldrich syndro 21.1 5.2E+02 0.011 26.8 8.4 74 176-249 345-429 (518)
102 PF01345 DUF11: Domain of unkn 20.4 67 0.0015 23.5 1.6 22 85-106 27-48 (76)
No 1
>PLN03148 Blue copper-like protein; Provisional
Probab=100.00 E-value=5.2e-41 Score=291.32 Aligned_cols=106 Identities=29% Similarity=0.584 Sum_probs=99.7
Q ss_pred HhhhcccceEEEEcCCCCccccCCCCCchhhccCCeEEeCCEEEEEeeCCCCeEEEEcccCCCccCCCCCCcccCCCCeE
Q 047972 59 FIISSCEAYKFNVGGKNGLWVVKPYENYNHWAERMRFQVNDSLYFKYKKGSDSVLVVTKDDYFSCNNKKPVQSLTDGESV 138 (273)
Q Consensus 59 ll~~~A~A~~y~VGg~~G~W~~~P~~~Yt~WAs~ktF~VGDtLvF~y~~~~HsVvqVtk~dYd~C~~s~pi~~~ssG~t~ 138 (273)
++...++|++|+|||+.| |+. +.||++|+++|+|+|||+|+|+|++++|||+||+|++|++|+.++++..|++|++.
T Consensus 13 ~~~~~~~a~~~~VGd~~G-W~~--~~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~~~tsG~d~ 89 (167)
T PLN03148 13 FSASATTATDHIVGANKG-WNP--GINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNWTSGKDF 89 (167)
T ss_pred HhhhhccceEEEeCCCCC-cCC--CCChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCcceecCCCcE
Confidence 344577899999999999 984 47899999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 047972 139 FSFDHSGPYFFISGNADNCNKGQKLIVVVM 168 (273)
Q Consensus 139 V~L~~pG~~YFICgv~gHC~~GMKlaI~V~ 168 (273)
|+|+++|+|||||+ .+||++||||.|+|.
T Consensus 90 v~L~~~G~~YFIcg-~ghC~~GmKl~I~V~ 118 (167)
T PLN03148 90 IPLNKAKRYYFICG-NGQCFNGMKVTILVH 118 (167)
T ss_pred EEecCCccEEEEcC-CCccccCCEEEEEEc
Confidence 99999999999999 599999999999995
No 2
>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.
Probab=99.96 E-value=6.3e-31 Score=204.77 Aligned_cols=84 Identities=38% Similarity=0.845 Sum_probs=69.2
Q ss_pred cccCCC-CCchhhccCCeEEeCCEEEEEeeCCCCeEEEEcccCCCccCCCCCCcccCCCCeEEEecCcccEEEEeCCCCC
Q 047972 78 WVVKPY-ENYNHWAERMRFQVNDSLYFKYKKGSDSVLVVTKDDYFSCNNKKPVQSLTDGESVFSFDHSGPYFFISGNADN 156 (273)
Q Consensus 78 W~~~P~-~~Yt~WAs~ktF~VGDtLvF~y~~~~HsVvqVtk~dYd~C~~s~pi~~~ssG~t~V~L~~pG~~YFICgv~gH 156 (273)
|+++.+ .+|++||++++|+|||+|+|+|+++.|+|+||+|++|++|+.++++..+++|++.|+|+++|++||||++++|
T Consensus 1 W~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~YFic~~~~H 80 (85)
T PF02298_consen 1 WTIPTNASNYTDWASGKTFRVGDTLVFNYDSGQHSVVEVSKADYDSCNSSNPISTYSTGNDTVTLTKPGPHYFICGVPGH 80 (85)
T ss_dssp SSSSSSTTHHHHHHCTS-BETTEEEEEE--TTTB-EEEESHHHHHHT--STTSEEE-SSEEEEEE-SSEEEEEE--STTT
T ss_pred CccCCCccchhHhhcCCcEeCCCEEEEEecCCCCeEEecChhhCccCCCCCceecccCCCEEEEeCCCcCeEEEeCCCCc
Confidence 777632 5899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 047972 157 CNKGQ 161 (273)
Q Consensus 157 C~~GM 161 (273)
|++||
T Consensus 81 C~~Gq 85 (85)
T PF02298_consen 81 CQKGQ 85 (85)
T ss_dssp TTTT-
T ss_pred ccccC
Confidence 99998
No 3
>PRK02710 plastocyanin; Provisional
Probab=98.92 E-value=1.5e-08 Score=82.84 Aligned_cols=92 Identities=16% Similarity=0.253 Sum_probs=60.7
Q ss_pred hcccceE--EEEcCCCCccccCCCCCchhhccCCeEEeCCEEEEEee-CCCCeEEEEcccCCCccCCCCCCcccCCCC-e
Q 047972 62 SSCEAYK--FNVGGKNGLWVVKPYENYNHWAERMRFQVNDSLYFKYK-KGSDSVLVVTKDDYFSCNNKKPVQSLTDGE-S 137 (273)
Q Consensus 62 ~~A~A~~--y~VGg~~G~W~~~P~~~Yt~WAs~ktF~VGDtLvF~y~-~~~HsVvqVtk~dYd~C~~s~pi~~~ssG~-t 137 (273)
..+.+++ +.+|.++|+-.+.|+ ..++++||+|.|... ...||++.-. .+....++ .....|. .
T Consensus 24 ~~a~a~~~~V~~~~~~~~~~F~P~--------~i~v~~Gd~V~~~N~~~~~H~v~~~~---~~~~~~~~--~~~~pg~t~ 90 (119)
T PRK02710 24 SSASAETVEVKMGSDAGMLAFEPS--------TLTIKAGDTVKWVNNKLAPHNAVFDG---AKELSHKD--LAFAPGESW 90 (119)
T ss_pred cccccceEEEEEccCCCeeEEeCC--------EEEEcCCCEEEEEECCCCCceEEecC---Cccccccc--cccCCCCEE
Confidence 3445554 456666662344443 568999999999874 3579986421 11111111 1233454 4
Q ss_pred EEEecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 047972 138 VFSFDHSGPYFFISGNADNCNKGQKLIVVVM 168 (273)
Q Consensus 138 ~V~L~~pG~~YFICgv~gHC~~GMKlaI~V~ 168 (273)
+++++++|.|.|+|. .|=+.|||..|+|.
T Consensus 91 ~~tF~~~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 91 EETFSEAGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred EEEecCCEEEEEEcC--CCccCCcEEEEEEC
Confidence 899999999999999 89999999999984
No 4
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.65 E-value=2e-07 Score=73.66 Aligned_cols=90 Identities=19% Similarity=0.272 Sum_probs=62.0
Q ss_pred EEEEcCCCCccccCCCCCchhhccCCeEEeCCEEEEEeeC-CCCeEEEEcccCCC------ccCCCCCCcccCCCCe-EE
Q 047972 68 KFNVGGKNGLWVVKPYENYNHWAERMRFQVNDSLYFKYKK-GSDSVLVVTKDDYF------SCNNKKPVQSLTDGES-VF 139 (273)
Q Consensus 68 ~y~VGg~~G~W~~~P~~~Yt~WAs~ktF~VGDtLvF~y~~-~~HsVvqVtk~dYd------~C~~s~pi~~~ssG~t-~V 139 (273)
+..||.++|+-.+.|+ ..++++||+|+|+.+. ..|+|+..+.. .. ......-......|.+ .+
T Consensus 2 ~v~~g~~~g~~~F~P~--------~i~v~~G~~V~~~N~~~~~H~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pG~t~~~ 72 (99)
T TIGR02656 2 TVKMGADKGALVFEPA--------KISIAAGDTVEWVNNKGGPHNVVFDEDA-VPAGVKELAKSLSHKDLLNSPGESYEV 72 (99)
T ss_pred EEEEecCCCceeEeCC--------EEEECCCCEEEEEECCCCCceEEECCCC-CccchhhhcccccccccccCCCCEEEE
Confidence 4678877775777664 5689999999999653 56999764321 00 0111000012233554 78
Q ss_pred EecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 047972 140 SFDHSGPYFFISGNADNCNKGQKLIVVVM 168 (273)
Q Consensus 140 ~L~~pG~~YFICgv~gHC~~GMKlaI~V~ 168 (273)
+++.+|+|.|+|. +|++.|||..|+|.
T Consensus 73 tF~~~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 73 TFSTPGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred EeCCCEEEEEEcC--CccccCCEEEEEEC
Confidence 9999999999999 99999999999984
No 5
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.62 E-value=1.2e-07 Score=74.68 Aligned_cols=75 Identities=17% Similarity=0.298 Sum_probs=54.4
Q ss_pred CCeEEeCCEEEEEee-CCCCeEEEEccc--CCCccCCCCC---CcccCCCCe-EEEecCcccEEEEeCCCCCCCCCCeEE
Q 047972 92 RMRFQVNDSLYFKYK-KGSDSVLVVTKD--DYFSCNNKKP---VQSLTDGES-VFSFDHSGPYFFISGNADNCNKGQKLI 164 (273)
Q Consensus 92 ~ktF~VGDtLvF~y~-~~~HsVvqVtk~--dYd~C~~s~p---i~~~ssG~t-~V~L~~pG~~YFICgv~gHC~~GMKla 164 (273)
..++++||+|.|.+. ...|+|+..+.. .-..+..... ......|.+ .++++++|+|.|+|. + |...|||..
T Consensus 18 ~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C~-P-H~~~GM~G~ 95 (99)
T PF00127_consen 18 EITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYCT-P-HYEAGMVGT 95 (99)
T ss_dssp EEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEET-T-TGGTTSEEE
T ss_pred EEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEcC-C-CcccCCEEE
Confidence 568999999999995 678999987521 0111221111 112345554 788999999999999 7 999999999
Q ss_pred EEEe
Q 047972 165 VVVM 168 (273)
Q Consensus 165 I~V~ 168 (273)
|+|.
T Consensus 96 i~V~ 99 (99)
T PF00127_consen 96 IIVE 99 (99)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9985
No 6
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=98.48 E-value=1.3e-06 Score=73.70 Aligned_cols=85 Identities=22% Similarity=0.296 Sum_probs=62.3
Q ss_pred EEEEcCCCCccccCCCCCchhhccCCeEEeCCEEEEEeeCC-CCeEEEEcccCCCccCCCCCCcccCCC--C-eEEEecC
Q 047972 68 KFNVGGKNGLWVVKPYENYNHWAERMRFQVNDSLYFKYKKG-SDSVLVVTKDDYFSCNNKKPVQSLTDG--E-SVFSFDH 143 (273)
Q Consensus 68 ~y~VGg~~G~W~~~P~~~Yt~WAs~ktF~VGDtLvF~y~~~-~HsVvqVtk~dYd~C~~s~pi~~~ssG--~-t~V~L~~ 143 (273)
...++.+.+.-.|.|. ..++++||++.|.+... .|||.-+...+ . .....+..+ . .+.++++
T Consensus 39 ~~~~~~~~~~~vF~PA--------~v~v~pGDTVtw~~~d~~~Hnv~~~~~~~-----~-~g~~~~~~~~~~s~~~Tfe~ 104 (128)
T COG3794 39 SVNKGVDIGAMVFEPA--------EVTVKPGDTVTWVNTDSVGHNVTAVGGMD-----P-EGSGTLKAGINESFTHTFET 104 (128)
T ss_pred eeeeeccCcceeEcCc--------EEEECCCCEEEEEECCCCCceEEEeCCCC-----c-ccccccccCCCcceEEEecc
Confidence 4455555543677765 67899999999999987 89998875431 1 111222222 3 3789999
Q ss_pred cccEEEEeCCCCCCCCCCeEEEEEe
Q 047972 144 SGPYFFISGNADNCNKGQKLIVVVM 168 (273)
Q Consensus 144 pG~~YFICgv~gHC~~GMKlaI~V~ 168 (273)
+|.|.|+|. -|=..|||..|.|.
T Consensus 105 ~G~Y~Y~C~--PH~~~gM~G~IvV~ 127 (128)
T COG3794 105 PGEYTYYCT--PHPGMGMKGKIVVG 127 (128)
T ss_pred cceEEEEec--cCCCCCcEEEEEeC
Confidence 999999999 69999999999996
No 7
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=98.46 E-value=1.3e-06 Score=72.14 Aligned_cols=89 Identities=19% Similarity=0.347 Sum_probs=63.2
Q ss_pred cceEEEEc--CCCCccccCCCCCchhhccCCeEEeCCEEEEEeeC--CCCeEEEEcccCCCccCCCCCCcccCCCC-eEE
Q 047972 65 EAYKFNVG--GKNGLWVVKPYENYNHWAERMRFQVNDSLYFKYKK--GSDSVLVVTKDDYFSCNNKKPVQSLTDGE-SVF 139 (273)
Q Consensus 65 ~A~~y~VG--g~~G~W~~~P~~~Yt~WAs~ktF~VGDtLvF~y~~--~~HsVvqVtk~dYd~C~~s~pi~~~ssG~-t~V 139 (273)
...+..|| +++|...|.|. ..++++||+|.|+++. ..|+|.-.+...|+. .......|. -.+
T Consensus 22 ~~~~v~~G~~~~~g~~~F~P~--------~ltV~~GdTVtw~~~~d~~~HnV~s~~~~~f~s-----~~~~~~~G~t~s~ 88 (115)
T TIGR03102 22 DEVTVDVGAEANGGGFAFDPP--------AIRVDPGTTVVWEWTGEGGGHNVVSDGDGDLDE-----SERVSEEGTTYEH 88 (115)
T ss_pred ceEEEEecccCCCCceeEeCC--------EEEECCCCEEEEEECCCCCCEEEEECCCCCccc-----cccccCCCCEEEE
Confidence 44568898 44444667664 5699999999999864 579997532233431 111223454 489
Q ss_pred EecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 047972 140 SFDHSGPYFFISGNADNCNKGQKLIVVVM 168 (273)
Q Consensus 140 ~L~~pG~~YFICgv~gHC~~GMKlaI~V~ 168 (273)
+++++|.|.|+|. -|=..|||..|+|.
T Consensus 89 Tf~~~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 89 TFEEPGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred EecCCcEEEEEcc--CCCCCCCEEEEEEC
Confidence 9999999999999 68778999999984
No 8
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=98.14 E-value=1.7e-05 Score=65.69 Aligned_cols=74 Identities=14% Similarity=0.075 Sum_probs=53.5
Q ss_pred CCeEEeCCEEEEEeeCCCCeEEEEcccCCCccCCCCCCcccCCCCeEEEecCcccEEEEeCCCCCCCCCCeEEEEEeec
Q 047972 92 RMRFQVNDSLYFKYKKGSDSVLVVTKDDYFSCNNKKPVQSLTDGESVFSFDHSGPYFFISGNADNCNKGQKLIVVVMAV 170 (273)
Q Consensus 92 ~ktF~VGDtLvF~y~~~~HsVvqVtk~dYd~C~~s~pi~~~ssG~t~V~L~~pG~~YFICgv~gHC~~GMKlaI~V~a~ 170 (273)
..++++||+|.|.+....|+|..+....-+. .+....-.+..-.++++++|.|-|+|. .|=..|||..|+|...
T Consensus 16 ~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~g---~~~~~s~~g~~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~ 89 (116)
T TIGR02375 16 YIRAAPGDTVTFVPTDKGHNVETIKGMIPEG---AEAFKSKINEEYTVTVTEEGVYGVKCT--PHYGMGMVALIQVGDP 89 (116)
T ss_pred EEEECCCCEEEEEECCCCeeEEEccCCCcCC---cccccCCCCCEEEEEeCCCEEEEEEcC--CCccCCCEEEEEECCC
Confidence 5689999999999988789987643211111 011111112223899999999999999 8999999999999874
No 9
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.54 E-value=0.00054 Score=52.51 Aligned_cols=70 Identities=17% Similarity=0.210 Sum_probs=48.4
Q ss_pred CCeEEeCCEEEEEeeCC-CCeEEEEcccCCCccCCCCCCcccCCCCe-EEEecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 047972 92 RMRFQVNDSLYFKYKKG-SDSVLVVTKDDYFSCNNKKPVQSLTDGES-VFSFDHSGPYFFISGNADNCNKGQKLIVVVM 168 (273)
Q Consensus 92 ~ktF~VGDtLvF~y~~~-~HsVvqVtk~dYd~C~~s~pi~~~ssG~t-~V~L~~pG~~YFICgv~gHC~~GMKlaI~V~ 168 (273)
..++++||+|.|+.+.. .|||...+..+ ..=+..+. ....|.+ .++++++|+|-|.|.... +||..|.|.
T Consensus 12 ~i~v~~GdtVt~~N~d~~~Hnv~~~~g~~-~~~~~~~~--~~~~g~~~~~tf~~~G~y~y~C~~Hp----~M~G~v~V~ 83 (83)
T TIGR02657 12 ELHVKVGDTVTWINREAMPHNVHFVAGVL-GEAALKGP--MMKKEQAYSLTFTEAGTYDYHCTPHP----FMRGKVVVE 83 (83)
T ss_pred EEEECCCCEEEEEECCCCCccEEecCCCC-cccccccc--ccCCCCEEEEECCCCEEEEEEcCCCC----CCeEEEEEC
Confidence 46899999999998854 79997654221 11001111 2234544 899999999999999754 599999884
No 10
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=97.07 E-value=0.0026 Score=54.49 Aligned_cols=72 Identities=14% Similarity=0.271 Sum_probs=48.9
Q ss_pred eEEeCCEEEEEeeCC----CCeEEEEccc-CCC------------ccCCCCCCcccCCC-----CeEEEecCcccEEEEe
Q 047972 94 RFQVNDSLYFKYKKG----SDSVLVVTKD-DYF------------SCNNKKPVQSLTDG-----ESVFSFDHSGPYFFIS 151 (273)
Q Consensus 94 tF~VGDtLvF~y~~~----~HsVvqVtk~-dYd------------~C~~s~pi~~~ssG-----~t~V~L~~pG~~YFIC 151 (273)
+++.||+++|...+. .|.....++. .+. .|....+ ..+| .-+++++++|+|||+|
T Consensus 55 ~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~---~~~g~~~~~~~tf~f~~aGtywyhC 131 (148)
T TIGR03095 55 VIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPP---PKSGKFGYTDFTYHFSTAGTYWYLC 131 (148)
T ss_pred EEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCC---CCCCccceeEEEEECCCCeEEEEEc
Confidence 578999999998864 4666654321 110 1221111 1122 2367788999999999
Q ss_pred CCCCCCCCCCeEEEEEe
Q 047972 152 GNADNCNKGQKLIVVVM 168 (273)
Q Consensus 152 gv~gHC~~GMKlaI~V~ 168 (273)
.+++|=+.||+-.|.|.
T Consensus 132 ~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 132 TYPGHAENGMYGKIVVK 148 (148)
T ss_pred CChhHHHCCCEEEEEEC
Confidence 99999999999999873
No 11
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.70 E-value=0.0019 Score=51.00 Aligned_cols=63 Identities=16% Similarity=0.289 Sum_probs=29.8
Q ss_pred CCeEEeCCEEEEEeeC---CCCeEEEEcccCCCccCCCCCCcccCCCCe-EEEe--cCcccEEEEeCCCCCCCCCCeEEE
Q 047972 92 RMRFQVNDSLYFKYKK---GSDSVLVVTKDDYFSCNNKKPVQSLTDGES-VFSF--DHSGPYFFISGNADNCNKGQKLIV 165 (273)
Q Consensus 92 ~ktF~VGDtLvF~y~~---~~HsVvqVtk~dYd~C~~s~pi~~~ssG~t-~V~L--~~pG~~YFICgv~gHC~~GMKlaI 165 (273)
..+++.|+.+.+.+.+ ..|++.. .+ .+-......|.+ ++++ +++|.|-|+|+.+.+ ||..|
T Consensus 36 ~i~v~~G~~v~l~~~N~~~~~h~~~i-~~--------~~~~~~l~~g~~~~~~f~~~~~G~y~~~C~~~~~----m~G~l 102 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNNDSRPHEFVI-PD--------LGISKVLPPGETATVTFTPLKPGEYEFYCTMHPN----MKGTL 102 (104)
T ss_dssp EEEEETTCEEEEEEEE-SSS-EEEEE-GG--------GTEEEEE-TT-EEEEEEEE-S-EEEEEB-SSS-T----TB---
T ss_pred EEEEcCCCeEEEEEEECCCCcEEEEE-CC--------CceEEEECCCCEEEEEEcCCCCEEEEEEcCCCCc----ceecc
Confidence 5689999954444443 3355533 22 011123344544 5555 999999999997663 77666
Q ss_pred EE
Q 047972 166 VV 167 (273)
Q Consensus 166 ~V 167 (273)
+|
T Consensus 103 iV 104 (104)
T PF13473_consen 103 IV 104 (104)
T ss_dssp --
T ss_pred cC
Confidence 54
No 12
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=96.48 E-value=0.014 Score=52.71 Aligned_cols=79 Identities=11% Similarity=0.220 Sum_probs=50.9
Q ss_pred eEEeCCEEEEEeeCC---CCeEEEEc-ccCCCccCC---CCCCc-------------ccCCCCeE--EEec-CcccEEEE
Q 047972 94 RFQVNDSLYFKYKKG---SDSVLVVT-KDDYFSCNN---KKPVQ-------------SLTDGESV--FSFD-HSGPYFFI 150 (273)
Q Consensus 94 tF~VGDtLvF~y~~~---~HsVvqVt-k~dYd~C~~---s~pi~-------------~~ssG~t~--V~L~-~pG~~YFI 150 (273)
-+-+|-++.|+|.+. .|+++.|. ...+..+.. ++.+. -...|.+. +..+ .+|+||+.
T Consensus 89 ~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~aG~Ywlv 168 (196)
T PF06525_consen 89 YVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLPAGYYWLV 168 (196)
T ss_pred EEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCCCceEEEE
Confidence 345688888888864 49998883 223333321 11110 01134432 2223 68999999
Q ss_pred eCCCCCCCCCCeEEEEEeecCC
Q 047972 151 SGNADNCNKGQKLIVVVMAVRN 172 (273)
Q Consensus 151 Cgv~gHC~~GMKlaI~V~a~~~ 172 (273)
|+..||-+.||-..+.|.+.-.
T Consensus 169 C~ipGHA~sGMw~~LiVs~~vt 190 (196)
T PF06525_consen 169 CGIPGHAESGMWGVLIVSSNVT 190 (196)
T ss_pred ccCCChhhcCCEEEEEEecCcc
Confidence 9999999999999999987653
No 13
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=95.10 E-value=0.17 Score=44.47 Aligned_cols=77 Identities=18% Similarity=0.246 Sum_probs=49.5
Q ss_pred cCCeEEeCCEEEEEeeCCCCeEEEEc--ccCC-----------C--ccCCCCCCcccCCCC---eEEEecCcccEEEEeC
Q 047972 91 ERMRFQVNDSLYFKYKKGSDSVLVVT--KDDY-----------F--SCNNKKPVQSLTDGE---SVFSFDHSGPYFFISG 152 (273)
Q Consensus 91 s~ktF~VGDtLvF~y~~~~HsVvqVt--k~dY-----------d--~C~~s~pi~~~ssG~---t~V~L~~pG~~YFICg 152 (273)
+...++.|.+++|.-.+...-+.+++ +.+. + .=+..+.+ .+.-|. -+|.++.+|.|-|+|.
T Consensus 63 ~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~Dme~d~~~~v-~L~PG~s~elvv~ft~~g~ye~~C~ 141 (158)
T COG4454 63 SSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILADDMEHDDPNTV-TLAPGKSGELVVVFTGAGKYEFACN 141 (158)
T ss_pred CcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCCccccCCccee-EeCCCCcEEEEEEecCCccEEEEec
Confidence 45688999999887765433333321 1110 0 00111111 222233 3788999999999999
Q ss_pred CCCCCCCCCeEEEEEe
Q 047972 153 NADNCNKGQKLIVVVM 168 (273)
Q Consensus 153 v~gHC~~GMKlaI~V~ 168 (273)
+++|-+.||...|+|.
T Consensus 142 iPGHy~AGM~g~itV~ 157 (158)
T COG4454 142 IPGHYEAGMVGEITVS 157 (158)
T ss_pred CCCcccCCcEEEEEeC
Confidence 9999999999999986
No 14
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=95.09 E-value=0.13 Score=46.53 Aligned_cols=32 Identities=19% Similarity=0.381 Sum_probs=27.7
Q ss_pred EecCcccEEEEeCCCCCCCCCCeEEEEEeecC
Q 047972 140 SFDHSGPYFFISGNADNCNKGQKLIVVVMAVR 171 (273)
Q Consensus 140 ~L~~pG~~YFICgv~gHC~~GMKlaI~V~a~~ 171 (273)
+-.++|.||++|+..||-+.||=..+.|.+.-
T Consensus 157 ~~~~~G~YwlvCgipGHAesGMw~~lIVSs~v 188 (195)
T TIGR03094 157 NDTSAGKYWLVCGITGHAESGMWAVVIVSSNV 188 (195)
T ss_pred ccCCCeeEEEEcccCChhhcCcEEEEEEecCc
Confidence 33478999999999999999999988888654
No 15
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=93.68 E-value=0.18 Score=43.16 Aligned_cols=57 Identities=16% Similarity=0.260 Sum_probs=35.9
Q ss_pred cCCeEEeCCEEEEEeeCCC---CeEEEEcccCCCccCCCCCCcccCCCCe---EEEecCcccEEEEeCCCCCCC
Q 047972 91 ERMRFQVNDSLYFKYKKGS---DSVLVVTKDDYFSCNNKKPVQSLTDGES---VFSFDHSGPYFFISGNADNCN 158 (273)
Q Consensus 91 s~ktF~VGDtLvF~y~~~~---HsVvqVtk~dYd~C~~s~pi~~~ssG~t---~V~L~~pG~~YFICgv~gHC~ 158 (273)
+..+++.||.+++++.+.. |++.. .+|. .. ....-|.+ .++.+++|+|.|+|+. ||.
T Consensus 61 ~~I~VkaGD~Vtl~vtN~d~~~H~f~i---~~~g---is---~~I~pGet~TitF~adKpG~Y~y~C~~--HP~ 123 (135)
T TIGR03096 61 EALVVKKGTPVKVTVENKSPISEGFSI---DAYG---IS---EVIKAGETKTISFKADKAGAFTIWCQL--HPK 123 (135)
T ss_pred CEEEECCCCEEEEEEEeCCCCccceEE---CCCC---cc---eEECCCCeEEEEEECCCCEEEEEeCCC--CCh
Confidence 3458899999998876432 44332 2332 11 12233443 5677999999999995 663
No 16
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=93.51 E-value=0.72 Score=39.20 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=24.3
Q ss_pred CCCC-eEEEec----Cccc-EEEEeCCCCCCCCCCeEEEE
Q 047972 133 TDGE-SVFSFD----HSGP-YFFISGNADNCNKGQKLIVV 166 (273)
Q Consensus 133 ssG~-t~V~L~----~pG~-~YFICgv~gHC~~GMKlaI~ 166 (273)
..|. ++|+++ ++|. |-|+|+++||=. .||..++
T Consensus 86 ggGes~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 86 GGGEKTSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred CCCceEEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 3444 467765 3675 999999999986 7988765
No 17
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=93.07 E-value=0.12 Score=44.55 Aligned_cols=75 Identities=24% Similarity=0.414 Sum_probs=44.4
Q ss_pred eEEeCCEEEEEeeC---C--------CCeEEEEcccCCCccCCC-CCCccc-------CCCCeEEEe-------------
Q 047972 94 RFQVNDSLYFKYKK---G--------SDSVLVVTKDDYFSCNNK-KPVQSL-------TDGESVFSF------------- 141 (273)
Q Consensus 94 tF~VGDtLvF~y~~---~--------~HsVvqVtk~dYd~C~~s-~pi~~~-------ssG~t~V~L------------- 141 (273)
.+++||.|-+.=.. . ...++.|++++|+.|+.. .....+ ..|..++++
T Consensus 25 ~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~~~~kft~kFq~fSP~p~G~E 104 (145)
T PF00812_consen 25 EVRIGDYLDIICPHYEPGGPPPEEYEYYILYMVSEEGYESCSLTSRPRLLWECDRPEAPHGPKKFTIKFQEFSPFPLGLE 104 (145)
T ss_dssp EE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE-HHHHHHTBSSTSEEEEEEE-TTTSTTSSEEEEEESSSS-SSTTSSS
T ss_pred EecCCCEEEEECCCCCCCCCCCCCceEEEEEEEcHHHhcccCCCCCCcEEEEeCCCCCCCCCcEEEEEEEECCCCCCCee
Confidence 67889999885432 2 346788999999999963 222222 123444443
Q ss_pred cCcc-cEEEEeCC-----------CCCCCC-CCeEEEEEe
Q 047972 142 DHSG-PYFFISGN-----------ADNCNK-GQKLIVVVM 168 (273)
Q Consensus 142 ~~pG-~~YFICgv-----------~gHC~~-GMKlaI~V~ 168 (273)
=++| .||||+.- +|-|.. .|||.+.|.
T Consensus 105 F~pG~~YY~ISts~g~~~g~~~~~gG~C~~~~mkl~~~v~ 144 (145)
T PF00812_consen 105 FQPGHDYYYISTSTGTQEGLDNRRGGLCLSHNMKLRIKVG 144 (145)
T ss_dssp --TTEEEEEEEEESSSSTTTTSSBSCHHHEEEEEEEEECT
T ss_pred ecCCCeEEEEEccCCCCCCcccccccccCcCeeEEEEecC
Confidence 1346 68888752 233744 689988874
No 18
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=91.76 E-value=0.77 Score=42.70 Aligned_cols=78 Identities=26% Similarity=0.474 Sum_probs=45.4
Q ss_pred eEEeCCEEEEE---eeCC------CCeEEEEcccCCCccCC-CCCCcccC--C--CCe----E----------EEecCcc
Q 047972 94 RFQVNDSLYFK---YKKG------SDSVLVVTKDDYFSCNN-KKPVQSLT--D--GES----V----------FSFDHSG 145 (273)
Q Consensus 94 tF~VGDtLvF~---y~~~------~HsVvqVtk~dYd~C~~-s~pi~~~s--s--G~t----~----------V~L~~pG 145 (273)
.+++||.|-+. |+.+ +.-++.|++++|+.|+. +.+...+. . .+. + +.+ ++|
T Consensus 46 ~v~igD~ldIiCP~~e~~~~~~~E~yilYmV~~~~y~~C~~~s~~~~~~~C~rP~~~~kfsikFq~ftP~p~G~EF-~pG 124 (233)
T KOG3858|consen 46 YVQIGDYLDIICPHYEEGGPEGYEYYILYMVSEEEYDLCELRSKPFKRWECNRPSTPLKFSIKFQRFTPFPLGFEF-QPG 124 (233)
T ss_pred EeccCCEEEEECCCCCCCCCCcceEEEEEEeChHHhhhhhccCCCcEEEEecCCCcchhhhhhheecCCCCCCccc-cCC
Confidence 56778888763 3322 12457899999999996 33322221 0 000 1 111 345
Q ss_pred -cEEEEeCC-----------CCCCCC-CCeEEEEEeecCC
Q 047972 146 -PYFFISGN-----------ADNCNK-GQKLIVVVMAVRN 172 (273)
Q Consensus 146 -~~YFICgv-----------~gHC~~-GMKlaI~V~a~~~ 172 (273)
+||||++- ++-|.. .||+.+.|.....
T Consensus 125 ~~YY~IStStg~~~g~~~~~ggvc~~~~mk~~~~V~~~~~ 164 (233)
T KOG3858|consen 125 HTYYYISTSTGDAEGLCNLRGGVCVTRNMKLLMKVGQSPR 164 (233)
T ss_pred CeEEEEeCCCccccccchhhCCEeccCCceEEEEecccCC
Confidence 68888652 355644 6999999986543
No 19
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=91.76 E-value=0.85 Score=45.01 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=20.5
Q ss_pred EEEecCcccEEEEeCCCCCCCCCCeEEEEEeec
Q 047972 138 VFSFDHSGPYFFISGNADNCNKGQKLIVVVMAV 170 (273)
Q Consensus 138 ~V~L~~pG~~YFICgv~gHC~~GMKlaI~V~a~ 170 (273)
.++| ++|+|.|+|+. | ..||-.|+|...
T Consensus 91 ~~~L-~pGtY~~~C~~--~--~~~~g~l~Vtg~ 118 (375)
T PRK10378 91 TANL-QPGEYDMTCGL--L--TNPKGKLIVKGE 118 (375)
T ss_pred EEec-CCceEEeecCc--C--CCCCceEEEeCC
Confidence 4555 79999999976 4 345778888743
No 20
>PLN02604 oxidoreductase
Probab=90.44 E-value=2 Score=44.00 Aligned_cols=79 Identities=15% Similarity=0.165 Sum_probs=49.7
Q ss_pred CCeEEeCCEEEEEeeCCC----CeEE-----EEcccCCCccCCCCCCcccCCCCe---EEEecCcccEEEEeCCCCCCCC
Q 047972 92 RMRFQVNDSLYFKYKKGS----DSVL-----VVTKDDYFSCNNKKPVQSLTDGES---VFSFDHSGPYFFISGNADNCNK 159 (273)
Q Consensus 92 ~ktF~VGDtLvF~y~~~~----HsVv-----qVtk~dYd~C~~s~pi~~~ssG~t---~V~L~~pG~~YFICgv~gHC~~ 159 (273)
..+++.||+|+++..+.. |++. +.....+|. ...........|.+ .++++.+|++||=|-...|-..
T Consensus 56 ~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG-~~~~tq~~i~pg~s~~y~f~~~~~Gt~wyH~H~~~q~~~ 134 (566)
T PLN02604 56 TILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDG-TEGVTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQREA 134 (566)
T ss_pred cEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccC-CCccccCccCCCCeEEEEEEcCCCEEEEEeeCcHHHHhC
Confidence 458899999999887642 2332 111000111 00000001233443 6788999999999999999999
Q ss_pred CCeEEEEEeecC
Q 047972 160 GQKLIVVVMAVR 171 (273)
Q Consensus 160 GMKlaI~V~a~~ 171 (273)
||...|.|....
T Consensus 135 Gl~G~liV~~~~ 146 (566)
T PLN02604 135 GLYGSIRVSLPR 146 (566)
T ss_pred CCeEEEEEEecC
Confidence 999999998654
No 21
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=87.96 E-value=1.6 Score=41.38 Aligned_cols=76 Identities=12% Similarity=0.179 Sum_probs=49.2
Q ss_pred CeEEeCCEEEEEeeCC-----CCeEEEEcccCCCccCCCCCCcccCCCCe---EEEecCcccEEEEeCCC----CCCCCC
Q 047972 93 MRFQVNDSLYFKYKKG-----SDSVLVVTKDDYFSCNNKKPVQSLTDGES---VFSFDHSGPYFFISGNA----DNCNKG 160 (273)
Q Consensus 93 ktF~VGDtLvF~y~~~-----~HsVvqVtk~dYd~C~~s~pi~~~ssG~t---~V~L~~pG~~YFICgv~----gHC~~G 160 (273)
.+++.||+++.++.+. .|++..=-.... +..........|.+ .|+++.+|+|||-|... .|=..|
T Consensus 61 irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~---dg~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~G 137 (311)
T TIGR02376 61 IRVHEGDYVELTLINPPTNTMPHNVDFHAATGA---LGGAALTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVSG 137 (311)
T ss_pred EEEECCCEEEEEEEeCCCCCCceeeeecCCCcc---CCCCcceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhcC
Confidence 4789999999888764 465543110000 00011112344543 67888999999999953 477889
Q ss_pred CeEEEEEeecC
Q 047972 161 QKLIVVVMAVR 171 (273)
Q Consensus 161 MKlaI~V~a~~ 171 (273)
|...+.|....
T Consensus 138 l~G~liV~~~~ 148 (311)
T TIGR02376 138 MNGAIMVLPRE 148 (311)
T ss_pred cceEEEeeccC
Confidence 99999998643
No 22
>PRK02888 nitrous-oxide reductase; Validated
Probab=86.76 E-value=2.4 Score=44.59 Aligned_cols=67 Identities=12% Similarity=0.218 Sum_probs=43.1
Q ss_pred CCeEEeCCEEEEEeeCC------CCeEEEEcccCCCccCCCCCCcccCCCCe---EEEecCcccEEEEeCCCCCCCC---
Q 047972 92 RMRFQVNDSLYFKYKKG------SDSVLVVTKDDYFSCNNKKPVQSLTDGES---VFSFDHSGPYFFISGNADNCNK--- 159 (273)
Q Consensus 92 ~ktF~VGDtLvF~y~~~------~HsVvqVtk~dYd~C~~s~pi~~~ssG~t---~V~L~~pG~~YFICgv~gHC~~--- 159 (273)
..++++||.+.|..++- .|.... ..|.- .....-|.+ .++.+++|.|||+|+. .|..
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~I---p~~nI------~~dv~PG~t~svtF~adkPGvy~~~Cte--fCGa~H~ 624 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAI---PNYGV------NMEVAPQATASVTFTADKPGVYWYYCTW--FCHALHM 624 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceee---cccCc------cEEEcCCceEEEEEEcCCCEEEEEECCc--ccccCcc
Confidence 45789999999999862 233322 11110 011123332 6778999999999995 4543
Q ss_pred CCeEEEEEee
Q 047972 160 GQKLIVVVMA 169 (273)
Q Consensus 160 GMKlaI~V~a 169 (273)
+|+..|.|..
T Consensus 625 ~M~G~~iVep 634 (635)
T PRK02888 625 EMRGRMLVEP 634 (635)
T ss_pred cceEEEEEEe
Confidence 6999998874
No 23
>PLN02354 copper ion binding / oxidoreductase
Probab=84.94 E-value=7.2 Score=40.10 Aligned_cols=72 Identities=15% Similarity=0.200 Sum_probs=48.6
Q ss_pred CeEEeCCEEEEEeeCCC--------CeEEEEcccCCC-----ccCCCCCCcccCCCCe---EEEe-cCcccEEEEeCCCC
Q 047972 93 MRFQVNDSLYFKYKKGS--------DSVLVVTKDDYF-----SCNNKKPVQSLTDGES---VFSF-DHSGPYFFISGNAD 155 (273)
Q Consensus 93 ktF~VGDtLvF~y~~~~--------HsVvqVtk~dYd-----~C~~s~pi~~~ssG~t---~V~L-~~pG~~YFICgv~g 155 (273)
.+++.||+|+.+..++- |-+.|-.....| .| ++. -|.+ +|++ +..|+|||=+-...
T Consensus 60 I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQc----pI~---PG~sf~Y~F~~~~q~GT~WYHsH~~~ 132 (552)
T PLN02354 60 INSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNC----PIP---PGTNFTYHFQPKDQIGSYFYYPSTGM 132 (552)
T ss_pred EEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcC----CCC---CCCcEEEEEEeCCCCcceEEecCccc
Confidence 37899999998887542 555553211122 23 232 2333 6777 47899999998888
Q ss_pred CCCCCCeEEEEEeecC
Q 047972 156 NCNKGQKLIVVVMAVR 171 (273)
Q Consensus 156 HC~~GMKlaI~V~a~~ 171 (273)
+-..||...|.|....
T Consensus 133 Q~~~Gl~G~lII~~~~ 148 (552)
T PLN02354 133 HRAAGGFGGLRVNSRL 148 (552)
T ss_pred eecCCccceEEEcCCc
Confidence 8888999999997543
No 24
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=83.80 E-value=0.74 Score=37.64 Aligned_cols=76 Identities=16% Similarity=0.186 Sum_probs=47.8
Q ss_pred CCeEEeCCEEEEEeeCC---CCeEEE----Eccc-CCCc--cCCCCCCcccCCCCe---EEEecC-cccEEEEeCCCCCC
Q 047972 92 RMRFQVNDSLYFKYKKG---SDSVLV----VTKD-DYFS--CNNKKPVQSLTDGES---VFSFDH-SGPYFFISGNADNC 157 (273)
Q Consensus 92 ~ktF~VGDtLvF~y~~~---~HsVvq----Vtk~-dYd~--C~~s~pi~~~ssG~t---~V~L~~-pG~~YFICgv~gHC 157 (273)
..+++.||+|..++.+. .+++.. +..+ ..|. .... .....|.+ .+++++ +|+|||-|...+|=
T Consensus 27 tI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~---~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~ 103 (117)
T PF07732_consen 27 TIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQ---CPIAPGESFTYEFTANQQAGTYWYHSHVHGQQ 103 (117)
T ss_dssp EEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSG---SSBSTTEEEEEEEEESSCSEEEEEEECSTTHH
T ss_pred EEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccc---eeEEeecceeeeEeeeccccceeEeeCCCchh
Confidence 35889999999999853 344432 1111 0111 1111 12233443 788888 99999999998864
Q ss_pred CCCCeEEEEEeec
Q 047972 158 NKGQKLIVVVMAV 170 (273)
Q Consensus 158 ~~GMKlaI~V~a~ 170 (273)
..||-..+.|...
T Consensus 104 ~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 104 VMGLYGAIIVEPP 116 (117)
T ss_dssp HTTEEEEEEEE-T
T ss_pred cCcCEEEEEEcCC
Confidence 5899999998753
No 25
>PLN02835 oxidoreductase
Probab=83.46 E-value=8.4 Score=39.50 Aligned_cols=74 Identities=11% Similarity=0.127 Sum_probs=47.6
Q ss_pred CeEEeCCEEEEEeeCCC--------CeEEEEcccCCCc-cCCCCCCcccCCCCe---EEEe-cCcccEEEEeCCCCCCCC
Q 047972 93 MRFQVNDSLYFKYKKGS--------DSVLVVTKDDYFS-CNNKKPVQSLTDGES---VFSF-DHSGPYFFISGNADNCNK 159 (273)
Q Consensus 93 ktF~VGDtLvF~y~~~~--------HsVvqVtk~dYd~-C~~s~pi~~~ssG~t---~V~L-~~pG~~YFICgv~gHC~~ 159 (273)
.+++.||+|+.+..++- |-+.|-.....|. -.+.-++. -|.+ .|++ +.+|+|||=+-...+-..
T Consensus 62 I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~tQ~pI~---PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~ 138 (539)
T PLN02835 62 LDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIP---PNSNYTYKFQTKDQIGTFTYFPSTLFHKAA 138 (539)
T ss_pred EEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCccCcCCCC---CCCcEEEEEEECCCCEeEEEEeCccchhcC
Confidence 48899999998887642 4555432211221 00111232 2433 6766 579999999988788888
Q ss_pred CCeEEEEEee
Q 047972 160 GQKLIVVVMA 169 (273)
Q Consensus 160 GMKlaI~V~a 169 (273)
|+...+.|..
T Consensus 139 Gl~G~lIV~~ 148 (539)
T PLN02835 139 GGFGAINVYE 148 (539)
T ss_pred cccceeEEeC
Confidence 9999999964
No 26
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=80.07 E-value=11 Score=39.09 Aligned_cols=19 Identities=21% Similarity=0.127 Sum_probs=11.3
Q ss_pred CCeEEEecCcccEEEEeCC
Q 047972 135 GESVFSFDHSGPYFFISGN 153 (273)
Q Consensus 135 G~t~V~L~~pG~~YFICgv 153 (273)
|...+.|++..+.=||-.+
T Consensus 277 gise~~l~~~~t~~fi~~f 295 (569)
T KOG3671|consen 277 GISEAQLTERDTMKFIYDF 295 (569)
T ss_pred CCCcccccchhhccccccc
Confidence 5556777776655555443
No 27
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=79.62 E-value=10 Score=39.61 Aligned_cols=75 Identities=13% Similarity=0.166 Sum_probs=49.3
Q ss_pred CeEEeCCEEEEEeeCCC--------CeEEEEccc-----CCCccCCCCCCcccCCCCeEEEe-cCcccEEEEeCCCCCCC
Q 047972 93 MRFQVNDSLYFKYKKGS--------DSVLVVTKD-----DYFSCNNKKPVQSLTDGESVFSF-DHSGPYFFISGNADNCN 158 (273)
Q Consensus 93 ktF~VGDtLvF~y~~~~--------HsVvqVtk~-----dYd~C~~s~pi~~~ssG~t~V~L-~~pG~~YFICgv~gHC~ 158 (273)
.+++.||+|+.+..+.. |-+.|-... .+..| ++.-..+=.-+|++ ++.|+|||=+-...+-.
T Consensus 62 I~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~TQc----PI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~ 137 (596)
T PLN00044 62 LNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGGTNC----AIPAGWNWTYQFQVKDQVGSFFYAPSTALHRA 137 (596)
T ss_pred EEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCCCcC----CcCCCCcEEEEEEeCCCCceeEeeccchhhhh
Confidence 37899999998877542 555543111 12234 23221111237788 48999999998888888
Q ss_pred CCCeEEEEEeecC
Q 047972 159 KGQKLIVVVMAVR 171 (273)
Q Consensus 159 ~GMKlaI~V~a~~ 171 (273)
.|+...|.|....
T Consensus 138 ~Gl~GalII~~~~ 150 (596)
T PLN00044 138 AGGYGAITINNRD 150 (596)
T ss_pred CcCeeEEEEcCcc
Confidence 8999999998643
No 28
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=79.62 E-value=8.3 Score=41.54 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=9.3
Q ss_pred cchhHHHHHHHHHHHHHH
Q 047972 23 HLNSPYLNFLKAICVTIM 40 (273)
Q Consensus 23 ~~~~~~~~~~~~~~~~~M 40 (273)
--+++.|.+|-+||-++|
T Consensus 34 rtktsvl~~lasic~v~g 51 (830)
T KOG1923|consen 34 RTKTSVLGSLASICYVIG 51 (830)
T ss_pred chHHHHHHHHHHHHHHhc
Confidence 334555555555555443
No 29
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=78.52 E-value=6.5 Score=34.86 Aligned_cols=67 Identities=16% Similarity=0.168 Sum_probs=41.9
Q ss_pred CCeEEeCCEEEEEeeCC--CCeEEEEcccCCCccCCCCCCccc-CCCC---eEEEecCcccEEEEeCCCCCCCC---CCe
Q 047972 92 RMRFQVNDSLYFKYKKG--SDSVLVVTKDDYFSCNNKKPVQSL-TDGE---SVFSFDHSGPYFFISGNADNCNK---GQK 162 (273)
Q Consensus 92 ~ktF~VGDtLvF~y~~~--~HsVvqVtk~dYd~C~~s~pi~~~-ssG~---t~V~L~~pG~~YFICgv~gHC~~---GMK 162 (273)
...+.+|+.++|+-++. .|+...-+ + .++.. --|. ..++.+++|.|++.|+. .|.. .|+
T Consensus 118 ~l~vp~g~~v~~~~ts~DV~Hsf~ip~---~-------~~k~da~PG~~~~~~~~~~~~G~y~~~c~e--~cG~~h~~M~ 185 (201)
T TIGR02866 118 ELVVPAGTPVRLQVTSKDVIHSFWVPE---L-------GGKIDAIPGQYNALWFNADEPGVYYGYCAE--LCGAGHSLML 185 (201)
T ss_pred EEEEEcCCEEEEEEEeCchhhcccccc---c-------CceEEecCCcEEEEEEEeCCCEEEEEEehh--hCCcCccCCe
Confidence 34678899999988753 13322211 1 11111 1232 26788999999999995 5654 599
Q ss_pred EEEEEeec
Q 047972 163 LIVVVMAV 170 (273)
Q Consensus 163 laI~V~a~ 170 (273)
+.|.|...
T Consensus 186 ~~v~v~~~ 193 (201)
T TIGR02866 186 FKVVVVER 193 (201)
T ss_pred EEEEEECH
Confidence 99998764
No 30
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=78.47 E-value=6 Score=36.94 Aligned_cols=32 Identities=22% Similarity=0.468 Sum_probs=27.4
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEeecC
Q 047972 138 VFSFDHSGPYFFISGNADNCNKG---QKLIVVVMAVR 171 (273)
Q Consensus 138 ~V~L~~pG~~YFICgv~gHC~~G---MKlaI~V~a~~ 171 (273)
.++.+++|.|+.+|. ..|..| |++.|.|.+..
T Consensus 180 ~~~~~~~G~Y~g~Ca--e~CG~gH~~M~~~v~vvs~~ 214 (247)
T COG1622 180 WLTANKPGTYRGICA--EYCGPGHSFMRFKVIVVSQE 214 (247)
T ss_pred EEecCCCeEEEEEcH--hhcCCCcccceEEEEEEcHH
Confidence 678899999999999 577665 99999998763
No 31
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=77.33 E-value=1.3 Score=35.74 Aligned_cols=8 Identities=25% Similarity=0.102 Sum_probs=5.1
Q ss_pred HhhhhhhH
Q 047972 40 MELKRNFT 47 (273)
Q Consensus 40 Mas~~~~~ 47 (273)
|+||+.++
T Consensus 1 MaSK~~ll 8 (95)
T PF07172_consen 1 MASKAFLL 8 (95)
T ss_pred CchhHHHH
Confidence 88776444
No 32
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=76.33 E-value=4.8 Score=33.19 Aligned_cols=66 Identities=17% Similarity=0.297 Sum_probs=40.5
Q ss_pred CCeEEeCCEEEEEeeCC--CCeEEEEcccCCCccCCCCCCcccCCCC---eEEEecCcccEEEEeCCCCCCCCC---CeE
Q 047972 92 RMRFQVNDSLYFKYKKG--SDSVLVVTKDDYFSCNNKKPVQSLTDGE---SVFSFDHSGPYFFISGNADNCNKG---QKL 163 (273)
Q Consensus 92 ~ktF~VGDtLvF~y~~~--~HsVvqVtk~dYd~C~~s~pi~~~ssG~---t~V~L~~pG~~YFICgv~gHC~~G---MKl 163 (273)
...+..|+.+.|+.++. .|+... . ++.- ...---|. ..++.+++|.|++.|. ..|..| |+.
T Consensus 47 ~l~lp~g~~v~~~ltS~DViHsf~i-p--~~~~------k~d~~PG~~~~~~~~~~~~G~y~~~C~--e~CG~gH~~M~~ 115 (120)
T PF00116_consen 47 ELVLPAGQPVRFHLTSEDVIHSFWI-P--ELGI------KMDAIPGRTNSVTFTPDKPGTYYGQCA--EYCGAGHSFMPG 115 (120)
T ss_dssp EEEEETTSEEEEEEEESSS-EEEEE-T--TCTE------EEEEBTTCEEEEEEEESSSEEEEEEE---SSSSTTGGG-EE
T ss_pred eecccccceEeEEEEcCCccccccc-c--ccCc------ccccccccceeeeeeeccCCcEEEcCc--cccCcCcCCCeE
Confidence 34678899999988863 355443 1 1110 00111233 2678899999999999 588887 888
Q ss_pred EEEEe
Q 047972 164 IVVVM 168 (273)
Q Consensus 164 aI~V~ 168 (273)
.|.|.
T Consensus 116 ~v~VV 120 (120)
T PF00116_consen 116 KVIVV 120 (120)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 88773
No 33
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=75.61 E-value=8.1 Score=39.35 Aligned_cols=76 Identities=16% Similarity=0.194 Sum_probs=49.5
Q ss_pred CeEEeCCEEEEEeeCCC----CeEEE----EcccCC-Cc--cCCCCCCcccCCCCe---EEEecCcccEEEEeCCCCCCC
Q 047972 93 MRFQVNDSLYFKYKKGS----DSVLV----VTKDDY-FS--CNNKKPVQSLTDGES---VFSFDHSGPYFFISGNADNCN 158 (273)
Q Consensus 93 ktF~VGDtLvF~y~~~~----HsVvq----Vtk~dY-d~--C~~s~pi~~~ssG~t---~V~L~~pG~~YFICgv~gHC~ 158 (273)
.+++.||.|+++..++. +++.. +....| |. .-..-++ .-|.+ .++++.+|+|||-|-...|-.
T Consensus 34 i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~I---~PG~s~~y~f~~~~~Gt~wyH~H~~~q~~ 110 (541)
T TIGR03388 34 IRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCAI---NPGETFIYNFVVDRPGTYFYHGHYGMQRS 110 (541)
T ss_pred EEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCCc---CCCCEEEEEEEcCCCEEEEEEecchHHhh
Confidence 48999999999888642 22221 111111 11 0000112 23443 688899999999999999999
Q ss_pred CCCeEEEEEeecC
Q 047972 159 KGQKLIVVVMAVR 171 (273)
Q Consensus 159 ~GMKlaI~V~a~~ 171 (273)
.||...|.|....
T Consensus 111 ~Gl~G~liV~~~~ 123 (541)
T TIGR03388 111 AGLYGSLIVDVPD 123 (541)
T ss_pred ccceEEEEEecCC
Confidence 9999999998653
No 34
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=71.47 E-value=21 Score=37.02 Aligned_cols=11 Identities=27% Similarity=0.256 Sum_probs=6.0
Q ss_pred HHHHHHHHHHH
Q 047972 29 LNFLKAICVTI 39 (273)
Q Consensus 29 ~~~~~~~~~~~ 39 (273)
-.|+|.|.-++
T Consensus 129 ~~F~k~V~~r~ 139 (569)
T KOG3671|consen 129 QKFRKKVQDRI 139 (569)
T ss_pred HHHHHHHHHHh
Confidence 34666655544
No 35
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=68.17 E-value=17 Score=37.86 Aligned_cols=73 Identities=15% Similarity=0.245 Sum_probs=45.3
Q ss_pred CeEEeCCEEEEEeeCCC---CeEE----EEcccCCCc-cCCC-CCCcccCCCCe---EEEecCcccEEEEeCCCCCCCCC
Q 047972 93 MRFQVNDSLYFKYKKGS---DSVL----VVTKDDYFS-CNNK-KPVQSLTDGES---VFSFDHSGPYFFISGNADNCNKG 160 (273)
Q Consensus 93 ktF~VGDtLvF~y~~~~---HsVv----qVtk~dYd~-C~~s-~pi~~~ssG~t---~V~L~~pG~~YFICgv~gHC~~G 160 (273)
.+++.||.|+.++.+.- +++. .+.. +.|. ...+ .++ .-|.+ .|++..+|+|||=|-...+=+.|
T Consensus 78 ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~-~~DGvP~vt~~~I---~PG~s~~Y~f~~~~~GTyWYHsH~~~q~~~G 153 (587)
T TIGR01480 78 LRWREGDTVRLRVTNTLPEDTSIHWHGILLPF-QMDGVPGVSFAGI---APGETFTYRFPVRQSGTYWYHSHSGFQEQAG 153 (587)
T ss_pred EEEECCCEEEEEEEcCCCCCceEEcCCCcCCc-cccCCCccccccc---CCCCeEEEEEECCCCeeEEEecCchhHhhcc
Confidence 48899999999887642 2221 1110 1111 1110 111 22432 67888999999999877777789
Q ss_pred CeEEEEEee
Q 047972 161 QKLIVVVMA 169 (273)
Q Consensus 161 MKlaI~V~a 169 (273)
+...|.|..
T Consensus 154 L~G~lIV~~ 162 (587)
T TIGR01480 154 LYGPLIIDP 162 (587)
T ss_pred ceEEEEECC
Confidence 998898864
No 36
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=68.13 E-value=17 Score=37.74 Aligned_cols=84 Identities=14% Similarity=0.224 Sum_probs=53.6
Q ss_pred cccCCCCCchhhccCCeEEeCCEEEEEeeCCC---CeE------EEEcccC--CCc-cCCCCCCcccCCCCe---EEEec
Q 047972 78 WVVKPYENYNHWAERMRFQVNDSLYFKYKKGS---DSV------LVVTKDD--YFS-CNNKKPVQSLTDGES---VFSFD 142 (273)
Q Consensus 78 W~~~P~~~Yt~WAs~ktF~VGDtLvF~y~~~~---HsV------vqVtk~d--Yd~-C~~s~pi~~~ssG~t---~V~L~ 142 (273)
|+++. ..|.. ....+++.||.+++.+.+.. |.+ ++|...+ |.. .+ .+ ...-|.+ .|..+
T Consensus 488 wtiNG-~~~~~-~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G~~~~~~d---Tv-~V~Pg~t~~~~f~ad 561 (587)
T TIGR01480 488 WSFDG-EAFGL-KTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQGEFQVRKH---TV-DVPPGGKRSFRVTAD 561 (587)
T ss_pred EEECC-ccCCC-CCceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCCcccccCC---ce-eeCCCCEEEEEEECC
Confidence 88863 23332 23568999999999998742 333 3442211 110 01 01 1122333 67788
Q ss_pred CcccEEEEeCCCCCCCCCCeEEEEE
Q 047972 143 HSGPYFFISGNADNCNKGQKLIVVV 167 (273)
Q Consensus 143 ~pG~~YFICgv~gHC~~GMKlaI~V 167 (273)
.+|+++|=|-+..|=+.||--.|.|
T Consensus 562 ~pG~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 562 ALGRWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred CCeEEEEcCCCHHHHhCcCcEEEEe
Confidence 9999999999999999999888776
No 37
>PLN02168 copper ion binding / pectinesterase
Probab=66.16 E-value=49 Score=34.15 Aligned_cols=79 Identities=11% Similarity=0.098 Sum_probs=48.9
Q ss_pred CeEEeCCEEEEEeeCCC--------CeEEEEcccCCCc-cCCCCCCcccCCCCeEEEec-CcccEEEEeCCCCCCCCCCe
Q 047972 93 MRFQVNDSLYFKYKKGS--------DSVLVVTKDDYFS-CNNKKPVQSLTDGESVFSFD-HSGPYFFISGNADNCNKGQK 162 (273)
Q Consensus 93 ktF~VGDtLvF~y~~~~--------HsVvqVtk~dYd~-C~~s~pi~~~ssG~t~V~L~-~pG~~YFICgv~gHC~~GMK 162 (273)
.+++.||+|+.+..++- |.+.+-.....|. ..+.-++.-..+=.-.|+++ ++|+|||=+-...+=..|+.
T Consensus 59 I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~ 138 (545)
T PLN02168 59 LNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGY 138 (545)
T ss_pred EEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcce
Confidence 48899999999988642 5554432211121 01111332211112378884 79999999977766677999
Q ss_pred EEEEEeecC
Q 047972 163 LIVVVMAVR 171 (273)
Q Consensus 163 laI~V~a~~ 171 (273)
..+.|....
T Consensus 139 G~lII~~~~ 147 (545)
T PLN02168 139 GAIRIYNPE 147 (545)
T ss_pred eEEEEcCCc
Confidence 999997643
No 38
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=61.94 E-value=1.3e+02 Score=30.48 Aligned_cols=20 Identities=25% Similarity=0.404 Sum_probs=12.8
Q ss_pred EEeCCCCCCCCCCeEEEEEe
Q 047972 149 FISGNADNCNKGQKLIVVVM 168 (273)
Q Consensus 149 FICgv~gHC~~GMKlaI~V~ 168 (273)
|.-..++.-.-||||.+.-.
T Consensus 129 ~lvk~gdtV~~g~~la~i~~ 148 (457)
T KOG0559|consen 129 LLVKDGDTVTPGQKLAKISP 148 (457)
T ss_pred EecCCCCcccCCceeEEecC
Confidence 33444566778898876554
No 39
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=61.74 E-value=11 Score=33.81 Aligned_cols=32 Identities=22% Similarity=0.448 Sum_probs=26.6
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEeecC
Q 047972 138 VFSFDHSGPYFFISGNADNCNKG---QKLIVVVMAVR 171 (273)
Q Consensus 138 ~V~L~~pG~~YFICgv~gHC~~G---MKlaI~V~a~~ 171 (273)
.++.+++|.|+..|. ..|..| |++.|.|.++.
T Consensus 159 ~~~~~~~G~y~g~C~--e~CG~~H~~M~~~v~v~~~~ 193 (194)
T MTH00047 159 FFCPDRHGVFVGYCS--ELCGVGHSYMPIVIEVVDVD 193 (194)
T ss_pred EEEcCCCEEEEEEee--hhhCcCcccCcEEEEEEcCC
Confidence 567789999999999 678765 99999998654
No 40
>PLN02991 oxidoreductase
Probab=60.17 E-value=61 Score=33.53 Aligned_cols=78 Identities=9% Similarity=0.054 Sum_probs=47.1
Q ss_pred CeEEeCCEEEEEeeCCC--------CeEEEEcccCCCccC-CCCCCcccCCCCeEEEe-cCcccEEEEeCCCCCCCCCCe
Q 047972 93 MRFQVNDSLYFKYKKGS--------DSVLVVTKDDYFSCN-NKKPVQSLTDGESVFSF-DHSGPYFFISGNADNCNKGQK 162 (273)
Q Consensus 93 ktF~VGDtLvF~y~~~~--------HsVvqVtk~dYd~C~-~s~pi~~~ssG~t~V~L-~~pG~~YFICgv~gHC~~GMK 162 (273)
.+++.||+|+.+..++- |-+.|......|.=- +.-++.-..+=.-.|++ ++.|+|||=+-...+-..|+.
T Consensus 61 I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~ 140 (543)
T PLN02991 61 IISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYGTTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGF 140 (543)
T ss_pred EEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCCCCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCe
Confidence 47899999998887642 555543111122100 01123221111236777 579999999887766667898
Q ss_pred EEEEEeec
Q 047972 163 LIVVVMAV 170 (273)
Q Consensus 163 laI~V~a~ 170 (273)
..+.|...
T Consensus 141 G~lIV~~~ 148 (543)
T PLN02991 141 GAIRISSR 148 (543)
T ss_pred eeEEEeCC
Confidence 88888754
No 41
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=59.45 E-value=5.3 Score=26.52 Aligned_cols=19 Identities=16% Similarity=0.602 Sum_probs=11.3
Q ss_pred chhhccCCeEEeCCEEEEE
Q 047972 86 YNHWAERMRFQVNDSLYFK 104 (273)
Q Consensus 86 Yt~WAs~ktF~VGDtLvF~ 104 (273)
|..|..+++...||++.|+
T Consensus 1 ~p~W~~~~~Y~~Gd~V~~~ 19 (41)
T PF02839_consen 1 YPAWDPGTTYNAGDRVSYN 19 (41)
T ss_dssp --B--TTCEE-TT-EEEET
T ss_pred CCCcCCCCEEcCCCEEEEC
Confidence 5679999999999999864
No 42
>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type. This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.
Probab=58.82 E-value=24 Score=30.62 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=18.3
Q ss_pred CCeEEeCCEEEEEeeCC-C---CeEEEEc
Q 047972 92 RMRFQVNDSLYFKYKKG-S---DSVLVVT 116 (273)
Q Consensus 92 ~ktF~VGDtLvF~y~~~-~---HsVvqVt 116 (273)
...++.||.++|+...+ . |.|+.+.
T Consensus 58 ~~~~~~GDIVvf~~~~~~~~iihRVi~v~ 86 (158)
T TIGR02228 58 PNDIQVGDVITYKSPGFNTPVTHRVIEIN 86 (158)
T ss_pred cCCCCCCCEEEEEECCCCccEEEEEEEEE
Confidence 35789999999998764 2 5666654
No 43
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=56.68 E-value=9.7 Score=31.50 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=12.8
Q ss_pred CCeEEeCCEEEEEeeC
Q 047972 92 RMRFQVNDSLYFKYKK 107 (273)
Q Consensus 92 ~ktF~VGDtLvF~y~~ 107 (273)
+++|++||.|+|+-..
T Consensus 29 r~~ikvGD~I~f~~~~ 44 (109)
T cd06555 29 RQQIKVGDKILFNDLD 44 (109)
T ss_pred hhcCCCCCEEEEEEcC
Confidence 3589999999996543
No 44
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.
Probab=51.32 E-value=11 Score=28.62 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=14.1
Q ss_pred hhccCCeEEeCCEEEEEeeCCCC
Q 047972 88 HWAERMRFQVNDSLYFKYKKGSD 110 (273)
Q Consensus 88 ~WAs~ktF~VGDtLvF~y~~~~H 110 (273)
+-+..+.+++||.++|.+..+..
T Consensus 67 ~Fv~~n~L~~GD~~~F~~~~~~~ 89 (100)
T PF02362_consen 67 KFVRDNGLKEGDVCVFELIGNSN 89 (100)
T ss_dssp HHHHHCT--TT-EEEEEE-SSSC
T ss_pred HHHHHcCCCCCCEEEEEEecCCC
Confidence 34567889999999999986433
No 45
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=47.95 E-value=24 Score=27.24 Aligned_cols=41 Identities=27% Similarity=0.502 Sum_probs=31.4
Q ss_pred eEEEEcCCC--CccccCCC---------CCchhhccCCeEEeCCEEEEEeeC
Q 047972 67 YKFNVGGKN--GLWVVKPY---------ENYNHWAERMRFQVNDSLYFKYKK 107 (273)
Q Consensus 67 ~~y~VGg~~--G~W~~~P~---------~~Yt~WAs~ktF~VGDtLvF~y~~ 107 (273)
..|+||+.. |.|+.... .+|..|.....+..|..++|||--
T Consensus 17 ~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 17 SVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 458899853 77985311 257899999999999999999963
No 46
>PLN02191 L-ascorbate oxidase
Probab=47.32 E-value=54 Score=33.97 Aligned_cols=75 Identities=11% Similarity=0.121 Sum_probs=47.8
Q ss_pred CeEEeCCEEEEEeeCCC---------CeEEEEcccCCCcc-C-CCCCCcccCCCCe---EEEecCcccEEEEeCCCCCCC
Q 047972 93 MRFQVNDSLYFKYKKGS---------DSVLVVTKDDYFSC-N-NKKPVQSLTDGES---VFSFDHSGPYFFISGNADNCN 158 (273)
Q Consensus 93 ktF~VGDtLvF~y~~~~---------HsVvqVtk~dYd~C-~-~s~pi~~~ssG~t---~V~L~~pG~~YFICgv~gHC~ 158 (273)
.+++.||+|+.+..+.. |.+.+-....+|.= . +.-++ .-|.+ .|+++++|+|||=|-...+-.
T Consensus 56 i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq~pI---~PG~s~~Y~f~~~~~GT~wYHsH~~~q~~ 132 (574)
T PLN02191 56 IDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQCAI---NPGETFTYKFTVEKPGTHFYHGHYGMQRS 132 (574)
T ss_pred EEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccccCCc---CCCCeEEEEEECCCCeEEEEeeCcHHHHh
Confidence 48899999998887641 23322111111110 0 00112 22433 788899999999999988889
Q ss_pred CCCeEEEEEeec
Q 047972 159 KGQKLIVVVMAV 170 (273)
Q Consensus 159 ~GMKlaI~V~a~ 170 (273)
.||...+.|...
T Consensus 133 ~Gl~G~liV~~~ 144 (574)
T PLN02191 133 AGLYGSLIVDVA 144 (574)
T ss_pred CCCEEEEEEccC
Confidence 999999999743
No 47
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=46.39 E-value=36 Score=35.58 Aligned_cols=64 Identities=22% Similarity=0.253 Sum_probs=43.7
Q ss_pred hhccCCeEEeCCEEEEEeeCCCCeEEEEcccCCCccCCCC----CCc-ccCCCCe-EEEecCcccEEEEe
Q 047972 88 HWAERMRFQVNDSLYFKYKKGSDSVLVVTKDDYFSCNNKK----PVQ-SLTDGES-VFSFDHSGPYFFIS 151 (273)
Q Consensus 88 ~WAs~ktF~VGDtLvF~y~~~~HsVvqVtk~dYd~C~~s~----pi~-~~ssG~t-~V~L~~pG~~YFIC 151 (273)
.=.+.|+|.--|.+.|+|+...-.++.+...|.|.-+.+- .+- .-.+|++ .|.|.+.|+.|=+|
T Consensus 208 ~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~ 277 (566)
T KOG2315|consen 208 QPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVT 277 (566)
T ss_pred chhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEE
Confidence 3345789999999999999877788877777777655431 111 1134665 78888888766543
No 48
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=44.81 E-value=29 Score=27.79 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=27.7
Q ss_pred EEEecCcccEEEEeCCCCCCCCCCeEEEEEee
Q 047972 138 VFSFDHSGPYFFISGNADNCNKGQKLIVVVMA 169 (273)
Q Consensus 138 ~V~L~~pG~~YFICgv~gHC~~GMKlaI~V~a 169 (273)
.+..+.+|.+.|=|-+..|=+.||...+.|..
T Consensus 105 ~~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 105 RFRADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred EEEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 56778999999999999999999999999864
No 49
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=43.41 E-value=15 Score=29.04 Aligned_cols=40 Identities=20% Similarity=0.424 Sum_probs=29.3
Q ss_pred EEEEcCC--CCccccCC-----CCCchhhccCCeEEeCCEEEEEeeC
Q 047972 68 KFNVGGK--NGLWVVKP-----YENYNHWAERMRFQVNDSLYFKYKK 107 (273)
Q Consensus 68 ~y~VGg~--~G~W~~~P-----~~~Yt~WAs~ktF~VGDtLvF~y~~ 107 (273)
-|++|+. .|.|+... ..+|..|.....+..|..|+|||-.
T Consensus 18 l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp~~~~veyKyv~ 64 (97)
T cd05810 18 VYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLPASTNVEWKCLK 64 (97)
T ss_pred EEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcCCCCeEEEEEEE
Confidence 4788874 46697421 1457779988899999999999953
No 50
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=43.05 E-value=32 Score=31.33 Aligned_cols=31 Identities=13% Similarity=0.364 Sum_probs=25.6
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEeec
Q 047972 138 VFSFDHSGPYFFISGNADNCNKG---QKLIVVVMAV 170 (273)
Q Consensus 138 ~V~L~~pG~~YFICgv~gHC~~G---MKlaI~V~a~ 170 (273)
.++.+++|.||..|. .-|..| |++.|.|...
T Consensus 183 ~~~~~~~g~y~~~C~--e~CG~~H~~M~~~v~v~~~ 216 (228)
T MTH00140 183 SFEPKRPGVFYGQCS--EICGANHSFMPIVVEAVPL 216 (228)
T ss_pred EEEeCCCEEEEEECc--cccCcCcCCCeEEEEEECH
Confidence 567899999999999 578776 9999988753
No 51
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=42.46 E-value=87 Score=31.96 Aligned_cols=75 Identities=11% Similarity=0.116 Sum_probs=45.8
Q ss_pred CeEEeCCEEEEEeeCCC--------CeEEEEcccCCCc--cCCCCCCcccCCCCe---EEEe-cCcccEEEEeCCCCCCC
Q 047972 93 MRFQVNDSLYFKYKKGS--------DSVLVVTKDDYFS--CNNKKPVQSLTDGES---VFSF-DHSGPYFFISGNADNCN 158 (273)
Q Consensus 93 ktF~VGDtLvF~y~~~~--------HsVvqVtk~dYd~--C~~s~pi~~~ssG~t---~V~L-~~pG~~YFICgv~gHC~ 158 (273)
.+++.||+|+.+..+.- |.+.|.....+|. ..+.-++ .-|++ .|++ +..|+|||=|-... ..
T Consensus 36 i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~pI---~PG~s~~Y~f~~~~~~GT~WYHsH~~~-~~ 111 (539)
T TIGR03389 36 LYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCPI---QPGQSYVYNFTITGQRGTLWWHAHISW-LR 111 (539)
T ss_pred EEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCCc---CCCCeEEEEEEecCCCeeEEEecCchh-hh
Confidence 48899999999887542 3333321111121 1111122 22443 6777 48999999998754 45
Q ss_pred CCCeEEEEEeecC
Q 047972 159 KGQKLIVVVMAVR 171 (273)
Q Consensus 159 ~GMKlaI~V~a~~ 171 (273)
.||...|.|....
T Consensus 112 ~Gl~G~lIV~~~~ 124 (539)
T TIGR03389 112 ATVYGAIVILPKP 124 (539)
T ss_pred ccceEEEEEcCCC
Confidence 6999999998644
No 52
>PRK10861 signal peptidase I; Provisional
Probab=41.94 E-value=1e+02 Score=30.01 Aligned_cols=15 Identities=27% Similarity=0.343 Sum_probs=12.2
Q ss_pred CeEEeCCEEEEEeeC
Q 047972 93 MRFQVNDSLYFKYKK 107 (273)
Q Consensus 93 ktF~VGDtLvF~y~~ 107 (273)
.+.+-||.++|++..
T Consensus 124 ~~p~RGDIVVF~~P~ 138 (324)
T PRK10861 124 GHPKRGDIVVFKYPE 138 (324)
T ss_pred CCCCCCCEEEEecCC
Confidence 467889999999865
No 53
>KOG3342 consensus Signal peptidase I [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.73 E-value=93 Score=27.94 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=16.4
Q ss_pred eEEeCCEEEEEeeCC----CCeEEEE
Q 047972 94 RFQVNDSLYFKYKKG----SDSVLVV 115 (273)
Q Consensus 94 tF~VGDtLvF~y~~~----~HsVvqV 115 (273)
.++|||.++|+.+.. .|.|+.+
T Consensus 77 p~~vGdivVf~vegR~IPiVHRviK~ 102 (180)
T KOG3342|consen 77 PIRVGDIVVFKVEGREIPIVHRVIKQ 102 (180)
T ss_pred cceeccEEEEEECCccCchhHHHHHH
Confidence 489999999999843 3666554
No 54
>PRK09723 putative fimbrial-like adhesin protein; Provisional
Probab=41.56 E-value=2.8e+02 Score=28.24 Aligned_cols=45 Identities=20% Similarity=0.437 Sum_probs=22.8
Q ss_pred cccceEEEEcCCCCccccCCCCCchhhccCCeEEeCCE-EEEEeeCCCCeEEE
Q 047972 63 SCEAYKFNVGGKNGLWVVKPYENYNHWAERMRFQVNDS-LYFKYKKGSDSVLV 114 (273)
Q Consensus 63 ~A~A~~y~VGg~~G~W~~~P~~~Yt~WAs~ktF~VGDt-LvF~y~~~~HsVvq 114 (273)
.+....|+||+..| = +|+ -..|.. +=.+||. +.|+|.....+++.
T Consensus 24 ~~~~~~~~vg~~~~-~--~~~--~~~~~~--~g~~~d~~~~f~~~~~~~~~~~ 69 (421)
T PRK09723 24 TDDNVSYIVGNYYG-V--GPS--DQKWNE--TGPSGDATVTFRYATSTNNLVF 69 (421)
T ss_pred ccCceEEEEccccc-c--CCc--cccccc--cCCCcceEEEeccccCCcceEE
Confidence 34567899998665 1 111 122322 2334553 34666654455543
No 55
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=41.10 E-value=20 Score=27.31 Aligned_cols=39 Identities=21% Similarity=0.487 Sum_probs=28.2
Q ss_pred EEEEcCC--CCccccCC-----CCCchhhccCCeEEeCCEEEEEee
Q 047972 68 KFNVGGK--NGLWVVKP-----YENYNHWAERMRFQVNDSLYFKYK 106 (273)
Q Consensus 68 ~y~VGg~--~G~W~~~P-----~~~Yt~WAs~ktF~VGDtLvF~y~ 106 (273)
-+++|+. .|.|+... ..++..|.....+..|+.++|||-
T Consensus 17 l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~~~~~eYKy~ 62 (95)
T cd05808 17 VYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPAGTAIEYKYI 62 (95)
T ss_pred EEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCCCCeEEEEEE
Confidence 4778873 45696421 145678988888888999999996
No 56
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=39.52 E-value=45 Score=28.10 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=16.0
Q ss_pred CeEEeCCEEEEEeeCCCCe
Q 047972 93 MRFQVNDSLYFKYKKGSDS 111 (273)
Q Consensus 93 ktF~VGDtLvF~y~~~~Hs 111 (273)
++|++||.+.|-++...|+
T Consensus 41 ~~f~~GDlvLflpt~~~~~ 59 (129)
T PF10377_consen 41 RNFQVGDLVLFLPTRNHNN 59 (129)
T ss_pred ecCCCCCEEEEEecCCCCc
Confidence 3799999999999986653
No 57
>PLN02792 oxidoreductase
Probab=39.20 E-value=1.1e+02 Score=31.61 Aligned_cols=75 Identities=19% Similarity=0.281 Sum_probs=47.1
Q ss_pred CeEEeCCEEEEEeeCCC--------CeEEEEcccCCCc-cCCCCCCcccCCCCe---EEEe-cCcccEEEEeCCCCCCCC
Q 047972 93 MRFQVNDSLYFKYKKGS--------DSVLVVTKDDYFS-CNNKKPVQSLTDGES---VFSF-DHSGPYFFISGNADNCNK 159 (273)
Q Consensus 93 ktF~VGDtLvF~y~~~~--------HsVvqVtk~dYd~-C~~s~pi~~~ssG~t---~V~L-~~pG~~YFICgv~gHC~~ 159 (273)
.+++.||+|+.+..++- |.+.|-.....|. -...-++ .-|.+ .|++ ++.|+|||=+-...+-..
T Consensus 49 I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~tqcPI---~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~ 125 (536)
T PLN02792 49 IRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTTCPI---PPGKNYTYDFQVKDQVGSYFYFPSLAVQKAA 125 (536)
T ss_pred EEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCCcCcc---CCCCcEEEEEEeCCCccceEEecCcchhhhc
Confidence 48899999998888642 5555532111111 0001133 22333 7787 479999999988777778
Q ss_pred CCeEEEEEeec
Q 047972 160 GQKLIVVVMAV 170 (273)
Q Consensus 160 GMKlaI~V~a~ 170 (273)
|+...+.|...
T Consensus 126 Gl~G~liI~~~ 136 (536)
T PLN02792 126 GGYGSLRIYSL 136 (536)
T ss_pred ccccceEEeCC
Confidence 88888877653
No 58
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=36.69 E-value=74 Score=34.66 Aligned_cols=18 Identities=33% Similarity=0.783 Sum_probs=8.8
Q ss_pred CCCCCCCCCcchhHHHHHHHH
Q 047972 14 PPFINPSPPHLNSPYLNFLKA 34 (273)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~ 34 (273)
|+|+|.+ +-+-+|||+.-
T Consensus 83 ~~~fn~d---f~~a~lQf~~i 100 (830)
T KOG1923|consen 83 PPFFNAD---FSAAKLQFYDV 100 (830)
T ss_pred ccccChH---HHHHHHHHHHH
Confidence 5555532 33445555544
No 59
>PF04014 Antitoxin-MazE: Antidote-toxin recognition MazE; InterPro: IPR007159 This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation []. AbrB is thought to interact directly with the transcription initiation regions of genes under its control []. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins []. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator []. DNA-binding activity in this AbrB homologue requires hexamerisation []. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins [].; PDB: 2L66_A 2GLW_A 3TND_D 2W1T_B 2RO5_B 2FY9_A 2RO3_B 1UB4_C 3ZVK_G 1YFB_B ....
Probab=36.49 E-value=23 Score=24.31 Aligned_cols=33 Identities=12% Similarity=0.253 Sum_probs=25.1
Q ss_pred EEcCCCCccccCCCCCchhhccCCeEEeCCEEEEEeeCC
Q 047972 70 NVGGKNGLWVVKPYENYNHWAERMRFQVNDSLYFKYKKG 108 (273)
Q Consensus 70 ~VGg~~G~W~~~P~~~Yt~WAs~ktF~VGDtLvF~y~~~ 108 (273)
+||.+.+ -+++ .+|.....++.||.|++.++.+
T Consensus 2 kvg~s~~-v~iP-----k~~~~~l~l~~Gd~v~i~~~~~ 34 (47)
T PF04014_consen 2 KVGNSGQ-VTIP-----KEIREKLGLKPGDEVEIEVEGD 34 (47)
T ss_dssp EETTCSE-EEE------HHHHHHTTSSTTTEEEEEEETT
T ss_pred EECCCce-EECC-----HHHHHHcCCCCCCEEEEEEeCC
Confidence 5666655 5554 5788888899999999999964
No 60
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=36.42 E-value=20 Score=27.83 Aligned_cols=13 Identities=38% Similarity=0.557 Sum_probs=10.9
Q ss_pred CCeEEeCCEEEEE
Q 047972 92 RMRFQVNDSLYFK 104 (273)
Q Consensus 92 ~ktF~VGDtLvF~ 104 (273)
++.|+|||.|+++
T Consensus 26 DRdf~VGD~L~L~ 38 (72)
T PF12961_consen 26 DRDFQVGDILVLR 38 (72)
T ss_pred CCCCCCCCEEEEE
Confidence 5689999999874
No 61
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=35.74 E-value=49 Score=30.28 Aligned_cols=31 Identities=16% Similarity=0.421 Sum_probs=25.1
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEeec
Q 047972 138 VFSFDHSGPYFFISGNADNCNKG---QKLIVVVMAV 170 (273)
Q Consensus 138 ~V~L~~pG~~YFICgv~gHC~~G---MKlaI~V~a~ 170 (273)
.++.+++|.||..|+ .-|..| |++.|.|...
T Consensus 183 ~~~~~~~G~y~g~Cs--e~CG~~H~~M~~~v~vv~~ 216 (227)
T MTH00154 183 NFLINRPGLFFGQCS--EICGANHSFMPIVIESVSV 216 (227)
T ss_pred EEEEcCceEEEEEee--chhCcCccCCeEEEEEeCH
Confidence 577899999999999 577665 8888887653
No 62
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=34.80 E-value=46 Score=30.35 Aligned_cols=31 Identities=13% Similarity=0.338 Sum_probs=25.2
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEeec
Q 047972 138 VFSFDHSGPYFFISGNADNCNKG---QKLIVVVMAV 170 (273)
Q Consensus 138 ~V~L~~pG~~YFICgv~gHC~~G---MKlaI~V~a~ 170 (273)
.++.+++|.||..|+ .-|..| |++.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~Cs--E~CG~~Hs~M~~~v~vv~~ 216 (225)
T MTH00168 183 AFLSSRPGSFYGQCS--EICGANHSFMPIVVEFVPW 216 (225)
T ss_pred EEEcCCCEEEEEEcc--cccCcCcCCCeEEEEEeCH
Confidence 567889999999999 577765 8888888753
No 63
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=34.48 E-value=52 Score=29.20 Aligned_cols=30 Identities=10% Similarity=0.176 Sum_probs=23.5
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEee
Q 047972 138 VFSFDHSGPYFFISGNADNCNKG---QKLIVVVMA 169 (273)
Q Consensus 138 ~V~L~~pG~~YFICgv~gHC~~G---MKlaI~V~a 169 (273)
.+..+++|.||..|. .-|..| |.+.|.|..
T Consensus 116 ~~~~~~~G~y~gqCs--ElCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 116 NTFILREGVFYGQCS--EMCGTLHGFMPIVVEAVS 148 (162)
T ss_pred EEecCCCeEEEEEcc--hhcCcCccCceEEEEEeC
Confidence 456789999999999 467654 888888765
No 64
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=33.97 E-value=49 Score=30.33 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=25.7
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEeec
Q 047972 138 VFSFDHSGPYFFISGNADNCNKG---QKLIVVVMAV 170 (273)
Q Consensus 138 ~V~L~~pG~~YFICgv~gHC~~G---MKlaI~V~a~ 170 (273)
.++.+++|.|+-.|. ..|..| |++.|.|.+.
T Consensus 182 ~~~~~~~G~y~g~Ca--E~CG~~Ha~M~~~V~v~~~ 215 (226)
T TIGR01433 182 HLIANEPGVYDGISA--NYSGPGFSGMKFKAIATDR 215 (226)
T ss_pred EEEeCCCEEEEEEch--hhcCcCccCCeEEEEEECH
Confidence 678899999999999 577665 9999988754
No 65
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=33.86 E-value=44 Score=30.63 Aligned_cols=31 Identities=13% Similarity=0.370 Sum_probs=24.4
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEeec
Q 047972 138 VFSFDHSGPYFFISGNADNCNKG---QKLIVVVMAV 170 (273)
Q Consensus 138 ~V~L~~pG~~YFICgv~gHC~~G---MKlaI~V~a~ 170 (273)
.++.+++|.||..|+ .-|..| |++.|.|...
T Consensus 183 ~~~~~~~G~~~g~C~--e~CG~~H~~M~~~v~vv~~ 216 (230)
T MTH00129 183 AFIASRPGVFYGQCS--EICGANHSFMPIVVEAVPL 216 (230)
T ss_pred EEEeCCceEEEEECh--hhccccccCCcEEEEEECH
Confidence 567789999999999 467654 8888888753
No 66
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=33.82 E-value=45 Score=30.99 Aligned_cols=26 Identities=23% Similarity=0.567 Sum_probs=19.8
Q ss_pred cccceEEEEcCCCCccccCCCCCchhhcc
Q 047972 63 SCEAYKFNVGGKNGLWVVKPYENYNHWAE 91 (273)
Q Consensus 63 ~A~A~~y~VGg~~G~W~~~P~~~Yt~WAs 91 (273)
.-+..+|.+++..| |.+-|+ ++-|.+
T Consensus 220 ~g~~~n~~~~g~~g-~e~iP~--~dfw~~ 245 (268)
T PF09451_consen 220 FGSWYNYNRYGARG-FELIPH--FDFWRS 245 (268)
T ss_pred hhhheeeccCCCCC-ceeccc--HhHHHh
Confidence 55678999999999 988754 466655
No 67
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=33.37 E-value=27 Score=27.74 Aligned_cols=41 Identities=20% Similarity=0.431 Sum_probs=30.2
Q ss_pred eEEEEcCC--CCccccCC--------CCCchhhccCCeEEeCCEEEEEeeC
Q 047972 67 YKFNVGGK--NGLWVVKP--------YENYNHWAERMRFQVNDSLYFKYKK 107 (273)
Q Consensus 67 ~~y~VGg~--~G~W~~~P--------~~~Yt~WAs~ktF~VGDtLvF~y~~ 107 (273)
.-|+||+. .|.|+... ...|..|.....+..|..++|||-.
T Consensus 20 ~l~vvGs~~~LG~W~~~~~~a~~~l~~~~~~~W~~~~~lp~~~~veyK~v~ 70 (103)
T cd05820 20 FLYLTGSVPELGNWSTSTDQAVGPLLCPNWPDWFVVASVPAGTYIEFKFLK 70 (103)
T ss_pred EEEEEECcHHhCCCChhccccccccccCCCCCEEEEEEcCCCCcEEEEEEE
Confidence 34788873 46797521 1467889888889999999999964
No 68
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=33.28 E-value=52 Score=29.92 Aligned_cols=31 Identities=13% Similarity=0.356 Sum_probs=25.3
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEeec
Q 047972 138 VFSFDHSGPYFFISGNADNCNKG---QKLIVVVMAV 170 (273)
Q Consensus 138 ~V~L~~pG~~YFICgv~gHC~~G---MKlaI~V~a~ 170 (273)
.++.+++|.||..|+ .-|..| |++.|.|.+.
T Consensus 183 ~~~~~~~G~y~g~Cs--E~CG~~Hs~M~~~v~vv~~ 216 (226)
T MTH00139 183 GFFINRPGVFYGQCS--EICGANHSFMPIVVEAISP 216 (226)
T ss_pred EEEcCCCEEEEEECh--hhcCcCcCCCeEEEEEeCH
Confidence 567899999999999 578765 8888888753
No 69
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=32.95 E-value=52 Score=30.08 Aligned_cols=31 Identities=13% Similarity=0.342 Sum_probs=24.9
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEeec
Q 047972 138 VFSFDHSGPYFFISGNADNCNKG---QKLIVVVMAV 170 (273)
Q Consensus 138 ~V~L~~pG~~YFICgv~gHC~~G---MKlaI~V~a~ 170 (273)
.++.+++|.||-.|+ .-|..| |++.|.|.+.
T Consensus 183 ~~~~~~~G~y~g~Cs--E~CG~~Hs~M~~~v~vv~~ 216 (227)
T MTH00117 183 SFITTRPGVFYGQCS--EICGANHSFMPIVVESVPL 216 (227)
T ss_pred EEEEcccceEEEEec--cccccCccCCeEEEEEcCH
Confidence 567899999999999 577665 8888887653
No 70
>PLN02792 oxidoreductase
Probab=32.57 E-value=2.7e+02 Score=28.76 Aligned_cols=79 Identities=18% Similarity=0.134 Sum_probs=52.8
Q ss_pred eEEeCCEEEEEeeCC---C-------CeEEEEc--ccCCCc-----cCCCCCC-----cccCCCCe--EEEecCcccEEE
Q 047972 94 RFQVNDSLYFKYKKG---S-------DSVLVVT--KDDYFS-----CNNKKPV-----QSLTDGES--VFSFDHSGPYFF 149 (273)
Q Consensus 94 tF~VGDtLvF~y~~~---~-------HsVvqVt--k~dYd~-----C~~s~pi-----~~~ssG~t--~V~L~~pG~~YF 149 (273)
.+.-|++++..+.+. . |+...|. ...|+. =|..+|. .....|.. .|..|.||..+|
T Consensus 406 ~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~ 485 (536)
T PLN02792 406 GAHHNAFLEIIFQNREKIVQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNL 485 (536)
T ss_pred EcCCCCEEEEEEECCCCCCCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeCCEEEee
Confidence 455677777666642 2 4666663 345542 1223343 23345554 677899999999
Q ss_pred EeCCCCCCCCCCeEEEEEeecCC
Q 047972 150 ISGNADNCNKGQKLIVVVMAVRN 172 (273)
Q Consensus 150 ICgv~gHC~~GMKlaI~V~a~~~ 172 (273)
=|-...|=..||.+.+.|.....
T Consensus 486 HCh~~~h~~~Gm~~~~~v~~~~~ 508 (536)
T PLN02792 486 RSQFWARQYLGQQFYLRVYSPTH 508 (536)
T ss_pred eEcchhccccceEEEEEEccCCC
Confidence 99999999999999999986654
No 71
>PHA03291 envelope glycoprotein I; Provisional
Probab=32.55 E-value=2.1e+02 Score=28.80 Aligned_cols=20 Identities=15% Similarity=0.129 Sum_probs=15.9
Q ss_pred cccceeeeeeeeeeeecccc
Q 047972 253 NSGLVLGFCVGVTLVLGSFI 272 (273)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~~~ 272 (273)
++.+.+=++|-|-|+|||-|
T Consensus 288 iiQiAIPasii~cV~lGSC~ 307 (401)
T PHA03291 288 IIQIAIPASIIACVFLGSCA 307 (401)
T ss_pred hheeccchHHHHHhhhhhhh
Confidence 56777778888889999854
No 72
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=32.04 E-value=56 Score=29.92 Aligned_cols=31 Identities=10% Similarity=0.367 Sum_probs=25.2
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEeec
Q 047972 138 VFSFDHSGPYFFISGNADNCNKG---QKLIVVVMAV 170 (273)
Q Consensus 138 ~V~L~~pG~~YFICgv~gHC~~G---MKlaI~V~a~ 170 (273)
.++.+++|.||..|+ .-|..| |++.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~Cs--e~CG~~Hs~M~~~v~vv~~ 216 (229)
T MTH00038 183 TFFISRTGLFYGQCS--EICGANHSFMPIVIESVPF 216 (229)
T ss_pred EEEcCCCEEEEEEcc--cccCcCcCCCeEEEEEeCH
Confidence 567899999999999 577765 8888888753
No 73
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=31.91 E-value=58 Score=29.86 Aligned_cols=31 Identities=10% Similarity=0.339 Sum_probs=24.5
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEeec
Q 047972 138 VFSFDHSGPYFFISGNADNCNKG---QKLIVVVMAV 170 (273)
Q Consensus 138 ~V~L~~pG~~YFICgv~gHC~~G---MKlaI~V~a~ 170 (273)
.++.+++|.||..|+ .-|..| |.+.|.|...
T Consensus 183 ~~~~~~~G~~~g~Cs--e~CG~~H~~M~~~v~v~~~ 216 (227)
T MTH00098 183 TLMSTRPGLYYGQCS--EICGSNHSFMPIVLELVPL 216 (227)
T ss_pred EEecCCcEEEEEECc--cccCcCcCCceEEEEEeCH
Confidence 567899999999999 477665 8888887653
No 74
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=31.42 E-value=91 Score=27.00 Aligned_cols=34 Identities=18% Similarity=0.375 Sum_probs=26.9
Q ss_pred CeEEeCCEEEEEee-----CCCCeEEEEcccCCCccCCC
Q 047972 93 MRFQVNDSLYFKYK-----KGSDSVLVVTKDDYFSCNNK 126 (273)
Q Consensus 93 ktF~VGDtLvF~y~-----~~~HsVvqVtk~dYd~C~~s 126 (273)
...+-||++++... ...|..+.+++...-.|+..
T Consensus 74 ~~~q~GDI~I~g~~g~S~G~~GHtgif~~~~~iIhc~y~ 112 (145)
T PF05382_consen 74 WNLQRGDIFIWGRRGNSAGAGGHTGIFMDNDTIIHCNYG 112 (145)
T ss_pred ccccCCCEEEEcCCCCCCCCCCeEEEEeCCCcEEEecCC
Confidence 46899999997655 23599999888888889974
No 75
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.20 E-value=4.8e+02 Score=27.39 Aligned_cols=75 Identities=13% Similarity=0.177 Sum_probs=50.1
Q ss_pred CeEEeCCEEEEEeeCCC--------CeEEEEcccCC-CccCC-CC-CCcccCCCCe---EEEec-CcccEEEEeCCCCCC
Q 047972 93 MRFQVNDSLYFKYKKGS--------DSVLVVTKDDY-FSCNN-KK-PVQSLTDGES---VFSFD-HSGPYFFISGNADNC 157 (273)
Q Consensus 93 ktF~VGDtLvF~y~~~~--------HsVvqVtk~dY-d~C~~-s~-pi~~~ssG~t---~V~L~-~pG~~YFICgv~gHC 157 (273)
.+...||+|+-+..+.. |.|.|- +..| |. .. ++ |+ ..|.+ .++++ +.|++||.....-|-
T Consensus 61 I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~-kn~w~DG-~~~TqCPI---~Pg~~~tY~F~v~~q~GT~~yh~h~~~~R 135 (563)
T KOG1263|consen 61 INAEEGDTIVVNVVNRLDEPFSIHWHGVRQR-KNPWQDG-VYITQCPI---QPGENFTYRFTVKDQIGTLWYHSHVSWQR 135 (563)
T ss_pred EEEEeCCEEEEEEEeCCCCceEEEecccccc-CCccccC-CccccCCc---CCCCeEEEEEEeCCcceeEEEeecccccc
Confidence 47889999988776432 444442 2222 11 00 00 22 23443 68888 889999999999999
Q ss_pred CCCCeEEEEEeecCC
Q 047972 158 NKGQKLIVVVMAVRN 172 (273)
Q Consensus 158 ~~GMKlaI~V~a~~~ 172 (273)
..|+..++.|.....
T Consensus 136 a~G~~G~liI~~~~~ 150 (563)
T KOG1263|consen 136 ATGVFGALIINPRPG 150 (563)
T ss_pred ccCceeEEEEcCCcc
Confidence 999999999997654
No 76
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=30.97 E-value=59 Score=29.30 Aligned_cols=31 Identities=19% Similarity=0.189 Sum_probs=26.1
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEeec
Q 047972 138 VFSFDHSGPYFFISGNADNCNKG---QKLIVVVMAV 170 (273)
Q Consensus 138 ~V~L~~pG~~YFICgv~gHC~~G---MKlaI~V~a~ 170 (273)
.++-+++|.||-.|+ ..|..| |++.|.|...
T Consensus 173 ~~~~~~~G~y~g~Ca--e~CG~~Hs~M~~~v~v~~~ 206 (217)
T TIGR01432 173 YLQADQVGTYRGRNA--NFNGEGFADQTFDVNAVSE 206 (217)
T ss_pred EEEeCCCEEEEEEeh--hhcCccccCCeEEEEEeCH
Confidence 678899999999999 578765 9999998754
No 77
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=29.58 E-value=41 Score=26.28 Aligned_cols=40 Identities=15% Similarity=0.394 Sum_probs=27.4
Q ss_pred eEEEEcCC--CCccccCC-----CCCchhhccCCeEEeCC-EEEEEee
Q 047972 67 YKFNVGGK--NGLWVVKP-----YENYNHWAERMRFQVND-SLYFKYK 106 (273)
Q Consensus 67 ~~y~VGg~--~G~W~~~P-----~~~Yt~WAs~ktF~VGD-tLvF~y~ 106 (273)
.-|+||+. .|.|.... ..++..|.....+..++ .++|||-
T Consensus 16 ~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~~p~~~~~ieYKyv 63 (99)
T cd05816 16 SVYVTGSSPELGNWDPQKALKLSDVGFPIWEADIDISKDSFPFEYKYI 63 (99)
T ss_pred EEEEEEChHHhCCCCccccccCCCCCCCcEEEEEEeCCCCccEEEEEE
Confidence 34788874 36697422 25678898877777776 7888885
No 78
>PF09792 But2: Ubiquitin 3 binding protein But2 C-terminal domain; InterPro: IPR018620 This entry represents a presumed C-terminal domain of ubiquitin 3 binding proteins (But2). But2 is conserved in yeasts. It binds to Uba3 and is involved in the NEDD8 signalling pathway [].
Probab=29.45 E-value=1.9e+02 Score=24.67 Aligned_cols=32 Identities=19% Similarity=0.356 Sum_probs=27.1
Q ss_pred EEEecCcccEEEEeCCCCCCCCCCeEEEEEeecCC
Q 047972 138 VFSFDHSGPYFFISGNADNCNKGQKLIVVVMAVRN 172 (273)
Q Consensus 138 ~V~L~~pG~~YFICgv~gHC~~GMKlaI~V~a~~~ 172 (273)
.+++.. |..|-|.. ..|..||++...+...+.
T Consensus 100 ~~~~~p-G~~y~i~~--f~Cp~g~~v~ye~~~~g~ 131 (143)
T PF09792_consen 100 TFTVSP-GNSYVINT--FPCPAGQAVSYEMSSAGD 131 (143)
T ss_pred ceEECC-CCceEeCc--EeCCCCCEEEEEEEecCC
Confidence 577776 99999986 799999999999987654
No 79
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=29.22 E-value=69 Score=29.58 Aligned_cols=31 Identities=10% Similarity=0.364 Sum_probs=25.5
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEeec
Q 047972 138 VFSFDHSGPYFFISGNADNCNKG---QKLIVVVMAV 170 (273)
Q Consensus 138 ~V~L~~pG~~YFICgv~gHC~~G---MKlaI~V~a~ 170 (273)
.++.+++|.||..|. ..|..| |++.|.|...
T Consensus 194 ~~~~~~~G~y~g~C~--e~CG~~Hs~M~~~v~vv~~ 227 (240)
T MTH00023 194 GFFIKRPGVFYGQCS--EICGANHSFMPIVIEAVSL 227 (240)
T ss_pred EEEcCCCEEEEEEch--hhcCcCccCCeEEEEEECH
Confidence 567899999999999 578776 8888888753
No 80
>PRK13838 conjugal transfer pilin processing protease TraF; Provisional
Probab=29.10 E-value=65 Score=28.41 Aligned_cols=15 Identities=13% Similarity=0.109 Sum_probs=12.5
Q ss_pred CCeEEeCCEEEEEee
Q 047972 92 RMRFQVNDSLYFKYK 106 (273)
Q Consensus 92 ~ktF~VGDtLvF~y~ 106 (273)
....+.||.++|+..
T Consensus 48 ~~~~~rGDiVvf~~P 62 (176)
T PRK13838 48 DRPVAVGDLVFICPP 62 (176)
T ss_pred CCCCCCCcEEEEECC
Confidence 467899999999864
No 81
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=28.48 E-value=37 Score=27.59 Aligned_cols=9 Identities=22% Similarity=0.756 Sum_probs=6.8
Q ss_pred CCchhhccC
Q 047972 84 ENYNHWAER 92 (273)
Q Consensus 84 ~~Yt~WAs~ 92 (273)
.+|+-|.+.
T Consensus 49 p~Y~PWf~P 57 (91)
T TIGR01165 49 PDYKPWFSP 57 (91)
T ss_pred CCCcccccc
Confidence 469999864
No 82
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=27.68 E-value=33 Score=26.85 Aligned_cols=41 Identities=22% Similarity=0.408 Sum_probs=29.4
Q ss_pred eEEEEcCC--CCccccCCC---------CCchhhccCCeEEeCCEEEEEeeC
Q 047972 67 YKFNVGGK--NGLWVVKPY---------ENYNHWAERMRFQVNDSLYFKYKK 107 (273)
Q Consensus 67 ~~y~VGg~--~G~W~~~P~---------~~Yt~WAs~ktF~VGDtLvF~y~~ 107 (273)
..|+||+. .|.|+.... ..|..|.....+..|..++|||-.
T Consensus 19 ~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~~~eyK~~~ 70 (101)
T cd05807 19 NVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGTTIEFKFIK 70 (101)
T ss_pred EEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCCcEEEEEEE
Confidence 34788873 466974211 246689888899999999999964
No 83
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=27.02 E-value=78 Score=28.99 Aligned_cols=31 Identities=10% Similarity=0.356 Sum_probs=24.7
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEeec
Q 047972 138 VFSFDHSGPYFFISGNADNCNKG---QKLIVVVMAV 170 (273)
Q Consensus 138 ~V~L~~pG~~YFICgv~gHC~~G---MKlaI~V~a~ 170 (273)
.++.+++|.||..|+ .-|..| |.+.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~Cs--e~CG~~Hs~M~~~v~vv~~ 216 (228)
T MTH00008 183 GFTITRPGVFYGQCS--EICGANHSFMPIVLEAVDT 216 (228)
T ss_pred EEEeCCCEEEEEECh--hhcCcCccCceeEEEEECH
Confidence 567899999999999 477664 8888887653
No 84
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=25.87 E-value=60 Score=24.45 Aligned_cols=39 Identities=23% Similarity=0.520 Sum_probs=27.0
Q ss_pred EEEEcCC--CCccccCCC-----CC-chhhccCCeEEe--CCEEEEEee
Q 047972 68 KFNVGGK--NGLWVVKPY-----EN-YNHWAERMRFQV--NDSLYFKYK 106 (273)
Q Consensus 68 ~y~VGg~--~G~W~~~P~-----~~-Yt~WAs~ktF~V--GDtLvF~y~ 106 (273)
-|++|+. .|.|+.... .+ +..|.....+.. |..++|||-
T Consensus 16 l~v~G~~~~LG~W~~~~a~~m~~~~~~~~W~~~v~~~~~~~~~~~yKy~ 64 (96)
T cd05467 16 VYVVGSHPELGNWDPAKALRLNTSNSYPLWTGEIPLPAPEGQVIEYKYV 64 (96)
T ss_pred EEEEeCcHHhCCcChhcCccccCCCCCCcEEEEEEecCCCCCeEEEEEE
Confidence 4778874 366974321 34 667988888888 888888885
No 85
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=24.92 E-value=75 Score=29.22 Aligned_cols=31 Identities=10% Similarity=0.352 Sum_probs=24.9
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEeec
Q 047972 138 VFSFDHSGPYFFISGNADNCNKG---QKLIVVVMAV 170 (273)
Q Consensus 138 ~V~L~~pG~~YFICgv~gHC~~G---MKlaI~V~a~ 170 (273)
.++.+++|.||..|. .-|..| |.+.|.|.+.
T Consensus 187 ~~~~~~~G~y~g~Cs--e~CG~~Hs~M~i~v~vv~~ 220 (234)
T MTH00051 187 SFFIKRPGVFYGQCS--EICGANHSFMPIVIEGVSL 220 (234)
T ss_pred EEEeCCCEEEEEECh--hhcCcccccCeeEEEEECH
Confidence 567899999999999 477665 8888887753
No 86
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=24.78 E-value=3.7e+02 Score=28.48 Aligned_cols=13 Identities=15% Similarity=0.409 Sum_probs=7.9
Q ss_pred cceEEEEcCCCCcc
Q 047972 65 EAYKFNVGGKNGLW 78 (273)
Q Consensus 65 ~A~~y~VGg~~G~W 78 (273)
..+.|.+==..| |
T Consensus 27 H~eii~lRmT~G-w 39 (582)
T PF03276_consen 27 HGEIIALRMTEG-W 39 (582)
T ss_pred CCCEEEEEeccC-c
Confidence 455666665667 5
No 87
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.48 E-value=5e+02 Score=27.37 Aligned_cols=10 Identities=10% Similarity=0.315 Sum_probs=5.0
Q ss_pred CCeEEEEEee
Q 047972 160 GQKLIVVVMA 169 (273)
Q Consensus 160 GMKlaI~V~a 169 (273)
|.++.|+...
T Consensus 503 ~~~~~~~~~~ 512 (620)
T PRK14948 503 GRSIKLNLES 512 (620)
T ss_pred CCCeEEEEEe
Confidence 4455555544
No 88
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=24.27 E-value=82 Score=28.84 Aligned_cols=31 Identities=16% Similarity=0.364 Sum_probs=24.5
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEeec
Q 047972 138 VFSFDHSGPYFFISGNADNCNKG---QKLIVVVMAV 170 (273)
Q Consensus 138 ~V~L~~pG~~YFICgv~gHC~~G---MKlaI~V~a~ 170 (273)
.+..+++|.||..|+ .-|..| |++.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~C~--e~CG~~Hs~M~~~v~vv~~ 216 (228)
T MTH00076 183 SFIASRPGVYYGQCS--EICGANHSFMPIVVEATPL 216 (228)
T ss_pred EEEeCCcEEEEEECh--hhcCccccCCceEEEEeCH
Confidence 567899999999999 467654 8888887753
No 89
>PRK11372 lysozyme inhibitor; Provisional
Probab=23.58 E-value=4.1e+02 Score=21.74 Aligned_cols=36 Identities=11% Similarity=0.103 Sum_probs=20.3
Q ss_pred CCEEEEEeeCCCCeEEEE---cccCCCccCCCCCCcccCCCCe
Q 047972 98 NDSLYFKYKKGSDSVLVV---TKDDYFSCNNKKPVQSLTDGES 137 (273)
Q Consensus 98 GDtLvF~y~~~~HsVvqV---tk~dYd~C~~s~pi~~~ssG~t 137 (273)
+|.+.|.|+...+.+.++ +..-|. .+.+..|+.|+.
T Consensus 50 ~~~v~l~~~~~~~~L~~~~SASGArY~----~g~~~fWtKG~e 88 (109)
T PRK11372 50 RQEVSFVYDNQLLHLKQGISASGARYT----DGIYVFWSKGDE 88 (109)
T ss_pred CCeEEEEECCEEEEEEEeeccCcCcEe----CCcEEEEEeCCe
Confidence 778888886544444444 233453 234456666754
No 90
>PF11604 CusF_Ec: Copper binding periplasmic protein CusF; InterPro: IPR021647 CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein []. ; PDB: 2L55_A 2VB3_X 1ZEQ_X 2QCP_X 3E6Z_X 2VB2_X.
Probab=23.46 E-value=57 Score=24.44 Aligned_cols=25 Identities=12% Similarity=0.288 Sum_probs=15.7
Q ss_pred hhhccCCeEEeCCEEEEEeeCCCCe
Q 047972 87 NHWAERMRFQVNDSLYFKYKKGSDS 111 (273)
Q Consensus 87 t~WAs~ktF~VGDtLvF~y~~~~Hs 111 (273)
.+.+.-..+++||.|.|.+......
T Consensus 35 ~~~~~l~~l~~Gd~V~F~~~~~~~~ 59 (70)
T PF11604_consen 35 ADPVDLAGLKPGDKVRFTFERTDDG 59 (70)
T ss_dssp -TTSEESS-STT-EEEEEEEEETTC
T ss_pred CChhhhhcCCCCCEEEEEEEECCCC
Confidence 3344445899999999999974433
No 91
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=23.36 E-value=5.6e+02 Score=24.95 Aligned_cols=84 Identities=26% Similarity=0.544 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 047972 175 QHHEAPPSPCPVSCTPPASSPQPSASSPPTSPASPRSSVPPP-VESPSPMQPPEPSDIPSDFGAPAPALTSSGSSGLGCN 253 (273)
Q Consensus 175 ~~~~~~p~~~p~~~~~~a~~p~P~~~~~~~~~~~~~p~~~~p-~~~~sp~~~~~~~~~~~~~~~~~p~~~~~~a~g~~~~ 253 (273)
..++++|+....++.++.+...|.+-+++++.+..+..++++ ...+...++++-.+...+++.+.+=---+-+.|+...
T Consensus 43 PtPt~PPtt~~aPP~p~~P~atPaP~appt~~PAdPnA~~Pp~PadPna~~pppadpnap~P~~pe~grvdn~~gGFS~v 122 (297)
T PF07174_consen 43 PTPTAPPTTTTAPPAPPPPAATPAPTAPPTPPPADPNAPPPPPPADPNAAPPPPADPNAPPPPAPEPGRVDNAAGGFSYV 122 (297)
T ss_pred CCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccceEEe
Q ss_pred c--ccee
Q 047972 254 S--GLVL 258 (273)
Q Consensus 254 ~--~~~l 258 (273)
+ ||+.
T Consensus 123 vP~GW~~ 129 (297)
T PF07174_consen 123 VPAGWVE 129 (297)
T ss_pred ccCCccc
No 92
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.58 E-value=1.1e+02 Score=28.85 Aligned_cols=31 Identities=13% Similarity=0.354 Sum_probs=25.1
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEeec
Q 047972 138 VFSFDHSGPYFFISGNADNCNKG---QKLIVVVMAV 170 (273)
Q Consensus 138 ~V~L~~pG~~YFICgv~gHC~~G---MKlaI~V~a~ 170 (273)
.++.+++|.||-.|. ..|..| |.+.|.|.+.
T Consensus 217 ~~~~~~~G~y~g~Cs--E~CG~~Hs~Mpi~v~vv~~ 250 (262)
T MTH00027 217 GFLIKRPGIFYGQCS--EICGANHSFMPIVVESVSL 250 (262)
T ss_pred EEEcCCcEEEEEEcc--hhcCcCcCCCeEEEEEECH
Confidence 677899999999998 577664 9999888753
No 93
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.50 E-value=1.3e+02 Score=31.51 Aligned_cols=43 Identities=16% Similarity=0.198 Sum_probs=36.0
Q ss_pred ccCCCCe--EEEecCcccEEEEeCCCCCCCCCCeEEEEEeecCCC
Q 047972 131 SLTDGES--VFSFDHSGPYFFISGNADNCNKGQKLIVVVMAVRNK 173 (273)
Q Consensus 131 ~~ssG~t--~V~L~~pG~~YFICgv~gHC~~GMKlaI~V~a~~~~ 173 (273)
.+-.|-+ .|.+|.||..+|=|-+..|=..||++...|......
T Consensus 497 V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~ 541 (563)
T KOG1263|consen 497 VPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEES 541 (563)
T ss_pred eCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCcc
Confidence 3445555 577899999999999999999999999999987654
No 94
>smart00495 ChtBD3 Chitin-binding domain type 3.
Probab=22.02 E-value=50 Score=21.80 Aligned_cols=18 Identities=11% Similarity=0.386 Sum_probs=13.6
Q ss_pred chhhccCCeEEeCCEEEE
Q 047972 86 YNHWAERMRFQVNDSLYF 103 (273)
Q Consensus 86 Yt~WAs~ktF~VGDtLvF 103 (273)
|..|..++.-..||++.|
T Consensus 1 ~~~W~~~~~Y~~Gd~V~~ 18 (41)
T smart00495 1 APAWQAGTVYTAGDVVSY 18 (41)
T ss_pred CCccCCCCcCcCCCEEEE
Confidence 456777877778998865
No 95
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=22.00 E-value=70 Score=24.61 Aligned_cols=38 Identities=18% Similarity=0.422 Sum_probs=27.9
Q ss_pred EEEcCC--CCccccCC---CCCchhhccCCeEEeCCEEEEEee
Q 047972 69 FNVGGK--NGLWVVKP---YENYNHWAERMRFQVNDSLYFKYK 106 (273)
Q Consensus 69 y~VGg~--~G~W~~~P---~~~Yt~WAs~ktF~VGDtLvF~y~ 106 (273)
+++|+. .|.|+..- ..++..|.....+..++.++|||-
T Consensus 19 ~v~G~~~~LG~W~~~~~l~~~~~~~W~~~v~lp~~~~ieYky~ 61 (95)
T cd05813 19 AVTGDHEELGSWHSYIPLQYVKDGFWSASVSLPVDTHVEWKFV 61 (95)
T ss_pred EEEcChHHHCCCCccccCcCCCCCCEEEEEEecCCCcEEEEEE
Confidence 578874 36687421 145678988889999999999996
No 96
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=21.95 E-value=1.6e+02 Score=18.97 Aligned_cols=26 Identities=19% Similarity=0.464 Sum_probs=22.0
Q ss_pred eEEEecCcccEEEEeCCCCCCCCCCe
Q 047972 137 SVFSFDHSGPYFFISGNADNCNKGQK 162 (273)
Q Consensus 137 t~V~L~~pG~~YFICgv~gHC~~GMK 162 (273)
.+..++.-|.-||=.|+...|..|+.
T Consensus 2 ~VWav~~~G~v~~R~Gis~~~P~G~~ 27 (32)
T PF06462_consen 2 QVWAVTSDGSVYFRTGISPSNPEGTS 27 (32)
T ss_pred eEEEEcCCCCEEEECcCCCCCCCCCC
Confidence 45678888999999999999999874
No 97
>PHA03378 EBNA-3B; Provisional
Probab=21.56 E-value=3.3e+02 Score=29.93 Aligned_cols=7 Identities=29% Similarity=0.610 Sum_probs=3.7
Q ss_pred HHHHHHH
Q 047972 28 YLNFLKA 34 (273)
Q Consensus 28 ~~~~~~~ 34 (273)
.|.+||.
T Consensus 505 ~ldlle~ 511 (991)
T PHA03378 505 MLDLLEK 511 (991)
T ss_pred HHHHHhh
Confidence 4555654
No 98
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=21.52 E-value=80 Score=24.75 Aligned_cols=39 Identities=15% Similarity=0.321 Sum_probs=27.5
Q ss_pred EEEEcCC--CCccccCC-----CCCchhhccCCeEEeCCEEEEEee
Q 047972 68 KFNVGGK--NGLWVVKP-----YENYNHWAERMRFQVNDSLYFKYK 106 (273)
Q Consensus 68 ~y~VGg~--~G~W~~~P-----~~~Yt~WAs~ktF~VGDtLvF~y~ 106 (273)
-++||+. .|.|+... ..+...|.....+..|..++|+|-
T Consensus 16 l~v~Gs~~~LG~W~~~~a~~m~~~~~~~W~~~v~lp~~~~veYKY~ 61 (100)
T cd05817 16 VYISGNCNQLGNWNPSKAKRMQWNEGDLWTVDVGIPESVYIEYKYF 61 (100)
T ss_pred EEEEeCcHHHCCCCccccCcccCCCCCCEEEEEEECCCCcEEEEEE
Confidence 4778874 46697432 145667888778888888999985
No 99
>COG3627 PhnJ Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=21.33 E-value=56 Score=30.76 Aligned_cols=24 Identities=21% Similarity=0.523 Sum_probs=21.0
Q ss_pred eEEEecCcccEEEEeCCCCCCCCC
Q 047972 137 SVFSFDHSGPYFFISGNADNCNKG 160 (273)
Q Consensus 137 t~V~L~~pG~~YFICgv~gHC~~G 160 (273)
+.|.++.-|-+-|+|+..+||++-
T Consensus 257 DEvi~DD~G~rmfvCSDTD~C~~r 280 (291)
T COG3627 257 DEVVLDDKGGRMFVCSDTDFCEQR 280 (291)
T ss_pred eeeEEcCCCceEEEecCchHHHhH
Confidence 478888889999999999999864
No 100
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=21.28 E-value=66 Score=33.09 Aligned_cols=44 Identities=11% Similarity=0.122 Sum_probs=27.1
Q ss_pred hhcccceEEEEcCCCCccccCCC-----CCchhhc--cCCeEEeCCEEEEE
Q 047972 61 ISSCEAYKFNVGGKNGLWVVKPY-----ENYNHWA--ERMRFQVNDSLYFK 104 (273)
Q Consensus 61 ~~~A~A~~y~VGg~~G~W~~~P~-----~~Yt~WA--s~ktF~VGDtLvF~ 104 (273)
...+.+..|+|-..|-.|.+... .+..+|- ....+++||.|...
T Consensus 22 ~~~asa~tytVq~GDTLw~IA~~ygvtv~~I~~~N~l~~~~I~~Gq~L~Ip 72 (481)
T PRK13914 22 PTIASASTVVVEAGDTLWGIAQSKGTTVDAIKKANNLTTDKIVPGQKLQVN 72 (481)
T ss_pred cccccCceEEECCCCCHHHHHHHHCCCHHHHHHHhCCCcccccCCCEEEeC
Confidence 33567788999876666765311 1222332 23468999999875
No 101
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=21.13 E-value=5.2e+02 Score=26.77 Aligned_cols=74 Identities=26% Similarity=0.405 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCC
Q 047972 176 HHEAPPSPCPVSCTPPASSPQPSASSPPTSPASP--------RSSVPPPVESPSPMQPPEPSDIPSDFGAPAPA---LTS 244 (273)
Q Consensus 176 ~~~~~p~~~p~~~~~~a~~p~P~~~~~~~~~~~~--------~p~~~~p~~~~sp~~~~~~~~~~~~~~~~~p~---~~~ 244 (273)
++.+++++++-+-.+-...+++++-.++-....| .||.+-|....-..++|+|++++.|..-..|. +..
T Consensus 345 sp~~pppp~pp~~~p~~~~~a~pp~~~pl~~~~p~~a~~~~~~pphp~p~~~~~~sppPppppppppg~~~~p~~i~p~~ 424 (518)
T KOG1830|consen 345 SPIVPPPPSPPSTIPFVEPAAPPPTNPPLCNPFPSIAMTSFLCPPHPLPQGAFFGSPPPPPPPPPPPGPKLPPSVICPSG 424 (518)
T ss_pred CCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCccccccccCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCcccCCCc
Q ss_pred CCCCC
Q 047972 245 SGSSG 249 (273)
Q Consensus 245 ~~a~g 249 (273)
+++.|
T Consensus 425 S~a~g 429 (518)
T KOG1830|consen 425 SLAKG 429 (518)
T ss_pred cCCCC
No 102
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=20.40 E-value=67 Score=23.54 Aligned_cols=22 Identities=5% Similarity=0.063 Sum_probs=18.8
Q ss_pred CchhhccCCeEEeCCEEEEEee
Q 047972 85 NYNHWAERMRFQVNDSLYFKYK 106 (273)
Q Consensus 85 ~Yt~WAs~ktF~VGDtLvF~y~ 106 (273)
...+|+...++++||.|+|...
T Consensus 27 ~~~k~~~~~~~~~Gd~v~ytit 48 (76)
T PF01345_consen 27 SITKTVNPSTANPGDTVTYTIT 48 (76)
T ss_pred EEEEecCCCcccCCCEEEEEEE
Confidence 3567888999999999998876
Done!