BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047977
(569 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 172 bits (437), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 188/622 (30%), Positives = 276/622 (44%), Gaps = 87/622 (13%)
Query: 1 LDLSHNNISGPIPPAIGXXXXXXXXXXXXXXXEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
LDLS N++SGP+ + + +G S L++L+V +N+L+ F
Sbjct: 105 LDLSRNSLSGPV----------------------TTLTSLGSCSGLKFLNVSSNTLD--F 140
Query: 61 PFQLS---NLRKVRYLDLGGNFLETPD---WSKFSNMPSLTHLSLCYNELTLEFPSFILT 114
P ++S L + LDL N + + W L HL++ N+++ + +
Sbjct: 141 PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSR 198
Query: 115 CRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLAT 174
C NL +LD+S N S IP + L++L+++ N+ G S +S + L +L +++
Sbjct: 199 CVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256
Query: 175 NKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSL-GQLKNLQHLDLRMNALNSTIPPEL 233
N+F GPIP + L S +Q + L N FTG+IP L G L LDL N +PP
Sbjct: 257 NQFVGPIP-PLPLKS-LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314
Query: 234 GLCTNLSFLALAMXXXXXXXXXXXXXXXXXXXXXXXD-NFLSGEISANLIGNWTELESLQ 292
G C+ L LAL+ N SGE+ +L L +L
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374
Query: 293 IQNNSFMGNIPPEIGLLTK--LQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTI 350
+ +N+F G I P + K LQ L+L N F+G IP + + L L LS N LSGTI
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434
Query: 351 PPXXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNK 410
P G IP E+ + +L ++ N L GE+P +S NLN
Sbjct: 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494
Query: 411 FSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGS 470
S+ N +G IP G+ +L + SNNSFSG +P EL +L L +N N F G+
Sbjct: 495 ISLSNNRLTGEIPKWIGRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553
Query: 471 LPACM--------------------------RNCSNL-NRVRFDG------NQFTG---- 493
+PA M + C N + F G N+ +
Sbjct: 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613
Query: 494 NIT-RAFGVH--PRLD------FIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIP 544
NIT R +G H P D F+ +S N G I + G L L L N ISG IP
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
Query: 545 AELGNLTRLGVLSLDSNELTGK 566
E+G+L L +L L SN+L G+
Sbjct: 674 DEVGDLRGLNILDLSSNKLDGR 695
Score = 150 bits (378), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 150/463 (32%), Positives = 218/463 (47%), Gaps = 73/463 (15%)
Query: 118 LTYLDLSLNKLSGLIPERLFTNLGK---LEYLNLTDN--QFQGKLSPNVSKLSNLTVLRL 172
LT LDLS N LSG P T+LG L++LN++ N F GK+S + KL++L VL L
Sbjct: 102 LTSLDLSRNSLSG--PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDL 158
Query: 173 ATNKFSGPIPGDIGLM-----SNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNS 227
+ N SG +G + ++ + + N +G + S + NL+ LD+ N ++
Sbjct: 159 SANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFST 214
Query: 228 TIPPELGLCTNLSFLALAMXXXXXXXXXXXXXXXXXXXXXXXDNFLSGEISANLIGNWTE 287
IP LG C+ L L ++ N LSG+ S I TE
Sbjct: 215 GIP-FLGDCSALQHLDIS------------------------GNKLSGDFS-RAISTCTE 248
Query: 288 LESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEI-GKLTSLEKLDLSGNQL 346
L+ L I +N F+G IPP L LQYL L N F+G IP + G +L LDLSGN
Sbjct: 249 LKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306
Query: 347 SGTIPPXXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLVAFDVNTNQLHGELP-ENISRL 405
G +PP GS + L + +++N GELP + + ++
Sbjct: 307 YGAVPPF------------------------FGSCSLLESLALSSNNFSGELPMDTLLKM 342
Query: 406 VNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSG--FALEELTVN 463
L + N FSG +P S SL+ + S+N+FSG + LC L+EL +
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402
Query: 464 GNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDW 523
N FTG +P + NCS L + N +G I + G +L ++L N GEI +
Sbjct: 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462
Query: 524 GECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGK 566
+ L L LD N ++G IP+ L N T L +SL +N LTG+
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 150/523 (28%), Positives = 217/523 (41%), Gaps = 80/523 (15%)
Query: 1 LDLSHNNISGPIPPAIGXXXXXXXXXXXXXXXEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
LD+S N +SG AI G IP L LQYLS+ N G
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEI 285
Query: 61 PFQLSN-LRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFP-SFILTCRNL 118
P LS + LDL GN F + L L+L N + E P +L R L
Sbjct: 286 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 345
Query: 119 TYLDLSLNKLSGLIPERLFTNLGK---------------------------LEYLNLTDN 151
LDLS N+ SG +PE L TNL L+ L L +N
Sbjct: 346 KVLDLSFNEFSGELPESL-TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Query: 152 QFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQ 211
F GK+ P +S S L L L+ N SG IP +G +S ++ ++L+ N G+IP L
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464
Query: 212 LKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMXXXXXXXXXXXXXXXXXXXXXXXDN 271
+K L+ L L N L IP L CTNL++++L+ +N
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS------------------------NN 500
Query: 272 FLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEI- 330
L+GEI IG L L++ NNSF GNIP E+G L +L L N F+G IP+ +
Sbjct: 501 RLTGEI-PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559
Query: 331 ---GKLTS----------------LEKLDLSGN--QLSGTIPPXXXXXXXXXXXXXXXXX 369
GK+ + ++ +GN + G
Sbjct: 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 619
Query: 370 XXGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKF 429
G P + S++ D++ N L G +P+ I + L ++ N+ SGSIP + G
Sbjct: 620 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679
Query: 430 SPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLP 472
L + S+N G +P + + L E+ ++ NN +G +P
Sbjct: 680 R-GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 128 bits (322), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 131/472 (27%), Positives = 191/472 (40%), Gaps = 78/472 (16%)
Query: 1 LDLSHNNISGPIPPAIGXXXXXXXXXXXXXXXEGSIPSE-MGDLSELQYLSVYNNSLNGA 59
LDLS N+ G +PP G G +P + + + L+ L + N +G
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358
Query: 60 FPFQLSNLRK-VRYLDLGGNFLETPDWSKFSNMP--SLTHLSLCYNELTLEFPSFILTCR 116
P L+NL + LDL N P P +L L L N T + P + C
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418
Query: 117 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNK 176
L L LS N LSG IP L +L KL L L N +G++ + + L L L N
Sbjct: 419 ELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477
Query: 177 FSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLC 236
+G IP + +N+ + L NN TG+IP +G+L+NL L L N+ + IP ELG C
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537
Query: 237 TNLSFLALAMXXXXXXXXXXXXXXXXXXXXXXXDNFLSGEISANLI-------------- 282
+L +L L SG+I+AN I
Sbjct: 538 RSLIWLDLNTNLFNGTIPAAMFKQ-------------SGKIAANFIAGKRYVYIKNDGMK 584
Query: 283 ------GNWTELESLQ--------------IQNNSFMGNIPPEIGLLTKLQYLFLYRNHF 322
GN E + ++ I + + G+ P + +L + N
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644
Query: 323 SGPIPSEIGKLTSLEKLDLSGNQLSGTIPPXXXXXXXXXXXXXXXXXXXGTIPPEIGSMA 382
SG IP EIG + L L+L N +SG+IP E+G +
Sbjct: 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPD------------------------EVGDLR 680
Query: 383 SLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIP--GDFGKFSPS 432
L D+++N+L G +P+ +S L L + + NN SG IP G F F P+
Sbjct: 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPA 732
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 172 bits (436), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 188/622 (30%), Positives = 276/622 (44%), Gaps = 87/622 (13%)
Query: 1 LDLSHNNISGPIPPAIGXXXXXXXXXXXXXXXEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
LDLS N++SGP+ + + +G S L++L+V +N+L+ F
Sbjct: 102 LDLSRNSLSGPV----------------------TTLTSLGSCSGLKFLNVSSNTLD--F 137
Query: 61 PFQLS---NLRKVRYLDLGGNFLETPD---WSKFSNMPSLTHLSLCYNELTLEFPSFILT 114
P ++S L + LDL N + + W L HL++ N+++ + +
Sbjct: 138 PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSR 195
Query: 115 CRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLAT 174
C NL +LD+S N S IP + L++L+++ N+ G S +S + L +L +++
Sbjct: 196 CVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 253
Query: 175 NKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSL-GQLKNLQHLDLRMNALNSTIPPEL 233
N+F GPIP + L S +Q + L N FTG+IP L G L LDL N +PP
Sbjct: 254 NQFVGPIP-PLPLKS-LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 311
Query: 234 GLCTNLSFLALAMXXXXXXXXXXXXXXXXXXXXXXXD-NFLSGEISANLIGNWTELESLQ 292
G C+ L LAL+ N SGE+ +L L +L
Sbjct: 312 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 371
Query: 293 IQNNSFMGNIPPEIGLLTK--LQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTI 350
+ +N+F G I P + K LQ L+L N F+G IP + + L L LS N LSGTI
Sbjct: 372 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 431
Query: 351 PPXXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNK 410
P G IP E+ + +L ++ N L GE+P +S NLN
Sbjct: 432 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 491
Query: 411 FSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGS 470
S+ N +G IP G+ +L + SNNSFSG +P EL +L L +N N F G+
Sbjct: 492 ISLSNNRLTGEIPKWIGRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 550
Query: 471 LPACM--------------------------RNCSNL-NRVRFDG------NQFTG---- 493
+PA M + C N + F G N+ +
Sbjct: 551 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 610
Query: 494 NIT-RAFGVH--PRLD------FIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIP 544
NIT R +G H P D F+ +S N G I + G L L L N ISG IP
Sbjct: 611 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
Query: 545 AELGNLTRLGVLSLDSNELTGK 566
E+G+L L +L L SN+L G+
Sbjct: 671 DEVGDLRGLNILDLSSNKLDGR 692
Score = 149 bits (377), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 150/463 (32%), Positives = 218/463 (47%), Gaps = 73/463 (15%)
Query: 118 LTYLDLSLNKLSGLIPERLFTNLGK---LEYLNLTDN--QFQGKLSPNVSKLSNLTVLRL 172
LT LDLS N LSG P T+LG L++LN++ N F GK+S + KL++L VL L
Sbjct: 99 LTSLDLSRNSLSG--PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDL 155
Query: 173 ATNKFSGPIPGDIGLM-----SNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNS 227
+ N SG +G + ++ + + N +G + S + NL+ LD+ N ++
Sbjct: 156 SANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFST 211
Query: 228 TIPPELGLCTNLSFLALAMXXXXXXXXXXXXXXXXXXXXXXXDNFLSGEISANLIGNWTE 287
IP LG C+ L L ++ N LSG+ S I TE
Sbjct: 212 GIP-FLGDCSALQHLDIS------------------------GNKLSGDFS-RAISTCTE 245
Query: 288 LESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEI-GKLTSLEKLDLSGNQL 346
L+ L I +N F+G IPP L LQYL L N F+G IP + G +L LDLSGN
Sbjct: 246 LKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 303
Query: 347 SGTIPPXXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLVAFDVNTNQLHGELP-ENISRL 405
G +PP GS + L + +++N GELP + + ++
Sbjct: 304 YGAVPPF------------------------FGSCSLLESLALSSNNFSGELPMDTLLKM 339
Query: 406 VNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSG--FALEELTVN 463
L + N FSG +P S SL+ + S+N+FSG + LC L+EL +
Sbjct: 340 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 399
Query: 464 GNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDW 523
N FTG +P + NCS L + N +G I + G +L ++L N GEI +
Sbjct: 400 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 459
Query: 524 GECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGK 566
+ L L LD N ++G IP+ L N T L +SL +N LTG+
Sbjct: 460 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 502
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 150/523 (28%), Positives = 217/523 (41%), Gaps = 80/523 (15%)
Query: 1 LDLSHNNISGPIPPAIGXXXXXXXXXXXXXXXEGSIPSEMGDLSELQYLSVYNNSLNGAF 60
LD+S N +SG AI G IP L LQYLS+ N G
Sbjct: 225 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEI 282
Query: 61 PFQLSN-LRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFP-SFILTCRNL 118
P LS + LDL GN F + L L+L N + E P +L R L
Sbjct: 283 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 342
Query: 119 TYLDLSLNKLSGLIPERLFTNLGK---------------------------LEYLNLTDN 151
LDLS N+ SG +PE L TNL L+ L L +N
Sbjct: 343 KVLDLSFNEFSGELPESL-TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 401
Query: 152 QFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQ 211
F GK+ P +S S L L L+ N SG IP +G +S ++ ++L+ N G+IP L
Sbjct: 402 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 461
Query: 212 LKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMXXXXXXXXXXXXXXXXXXXXXXXDN 271
+K L+ L L N L IP L CTNL++++L+ +N
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS------------------------NN 497
Query: 272 FLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEI- 330
L+GEI IG L L++ NNSF GNIP E+G L +L L N F+G IP+ +
Sbjct: 498 RLTGEI-PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 556
Query: 331 ---GKLTS----------------LEKLDLSGN--QLSGTIPPXXXXXXXXXXXXXXXXX 369
GK+ + ++ +GN + G
Sbjct: 557 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 616
Query: 370 XXGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKF 429
G P + S++ D++ N L G +P+ I + L ++ N+ SGSIP + G
Sbjct: 617 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 676
Query: 430 SPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLP 472
L + S+N G +P + + L E+ ++ NN +G +P
Sbjct: 677 R-GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 128 bits (322), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 131/472 (27%), Positives = 191/472 (40%), Gaps = 78/472 (16%)
Query: 1 LDLSHNNISGPIPPAIGXXXXXXXXXXXXXXXEGSIPSE-MGDLSELQYLSVYNNSLNGA 59
LDLS N+ G +PP G G +P + + + L+ L + N +G
Sbjct: 296 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 355
Query: 60 FPFQLSNLRK-VRYLDLGGNFLETPDWSKFSNMP--SLTHLSLCYNELTLEFPSFILTCR 116
P L+NL + LDL N P P +L L L N T + P + C
Sbjct: 356 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 415
Query: 117 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNK 176
L L LS N LSG IP L +L KL L L N +G++ + + L L L N
Sbjct: 416 ELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 474
Query: 177 FSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLC 236
+G IP + +N+ + L NN TG+IP +G+L+NL L L N+ + IP ELG C
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 534
Query: 237 TNLSFLALAMXXXXXXXXXXXXXXXXXXXXXXXDNFLSGEISANLI-------------- 282
+L +L L SG+I+AN I
Sbjct: 535 RSLIWLDLNTNLFNGTIPAAMFKQ-------------SGKIAANFIAGKRYVYIKNDGMK 581
Query: 283 ------GNWTELESLQ--------------IQNNSFMGNIPPEIGLLTKLQYLFLYRNHF 322
GN E + ++ I + + G+ P + +L + N
Sbjct: 582 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 641
Query: 323 SGPIPSEIGKLTSLEKLDLSGNQLSGTIPPXXXXXXXXXXXXXXXXXXXGTIPPEIGSMA 382
SG IP EIG + L L+L N +SG+IP E+G +
Sbjct: 642 SGYIPKEIGSMPYLFILNLGHNDISGSIPD------------------------EVGDLR 677
Query: 383 SLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIP--GDFGKFSPS 432
L D+++N+L G +P+ +S L L + + NN SG IP G F F P+
Sbjct: 678 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPA 729
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 96/243 (39%), Gaps = 27/243 (11%)
Query: 325 PIPSEIGKLTSLEKLDLSG-NQLSGTIPPXXXXXXXXXXXXXXXXXXXGTIPPEIGSMAS 383
PIPS + L L L + G N L G IPP G IP + + +
Sbjct: 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 384 LVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSF 443
LV D + N L G LP +IS L NL + N SG+IP +G FS
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK------------ 174
Query: 444 SGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHP 503
+T++ N TG +P N NL V N G+ + FG
Sbjct: 175 ------------LFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDK 221
Query: 504 RLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNEL 563
I L+ N ++ G +NL+ L L N+I G +P L L L L++ N L
Sbjct: 222 NTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Query: 564 TGK 566
G+
Sbjct: 281 CGE 283
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 99/198 (50%), Gaps = 4/198 (2%)
Query: 34 GSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPS 93
G IP + L++L YL + + +++GA P LS ++ + LD N L S++P+
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 94 LTHLSLCYNELTLEFP-SFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQ 152
L ++ N ++ P S+ + T + +S N+L+G IP F NL L +++L+ N
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANL-NLAFVDLSRNM 208
Query: 153 FQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQL 212
+G S N + LA N + + G +GL N+ ++L NN G +P L QL
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQL 267
Query: 213 KNLQHLDLRMNALNSTIP 230
K L L++ N L IP
Sbjct: 268 KFLHSLNVSFNNLCGEIP 285
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 92/222 (41%), Gaps = 30/222 (13%)
Query: 296 NSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPXXX 355
N+ +G IPP I LT+L YL++ + SG IP + ++ +L LD S N LSGT+PP
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 356 XXXXXXXXXXXXXXXXGTIPPEIGSMASL-VAFDVNTNQLHGELPENISRLVNLNKFSVF 414
G IP GS + L + ++ N+L G++P + L NL +
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLS 205
Query: 415 TNNFSG--------------------SIPGDFGK--FSPSLINVSFSNNSFSGELPYELC 452
N G S+ D GK S +L + NN G LP L
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265
Query: 453 SGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGN 494
L L V+ NN G +P N RFD + + N
Sbjct: 266 QLKFLHSLNVSFNNLCGEIP------QGGNLQRFDVSAYANN 301
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 113/279 (40%), Gaps = 36/279 (12%)
Query: 69 KVRYLDLGGNFLETPDW--SKFSNMPSLTHLSLC-YNELTLEFPSFILTCRNLTYLDLSL 125
+V LDL G L P S +N+P L L + N L P I L YL ++
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 126 NKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDI 185
+SG IP+ L + + L L+ + N G L P++S L NL + N+ SG IP
Sbjct: 111 TNVSGAIPDFL-SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169
Query: 186 GLMSNI-QLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLAL 244
G S + + + N TG+IP + L NL +DL N L G N + L
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228
Query: 245 AMXXXXXXXXXXXXXXXXXXXXXXXDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPP 304
A N L+ ++ +G L L ++NN G +P
Sbjct: 229 A------------------------KNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQ 262
Query: 305 EIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSG 343
+ L L L + N+ G IP +L++ D+S
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIPQG----GNLQRFDVSA 297
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 83/186 (44%), Gaps = 7/186 (3%)
Query: 1 LDLSHNNISGPIPPAIGXXXXXXXXXXXXXXXEGSIPSEMGDLSEL-QYLSVYNNSLNGA 59
LD S+N +SG +PP+I G+IP G S+L +++ N L G
Sbjct: 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189
Query: 60 FPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLT 119
P +NL + ++DL N LE F + + + L N L + L+ +NL
Sbjct: 190 IPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS-KNLN 247
Query: 120 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNK--F 177
LDL N++ G +P+ L T L L LN++ N G++ P L V A NK
Sbjct: 248 GLDLRNNRIYGTLPQGL-TQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKCLC 305
Query: 178 SGPIPG 183
P+P
Sbjct: 306 GSPLPA 311
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 87/187 (46%), Gaps = 5/187 (2%)
Query: 60 FPFQLSNLRKVRYLDLGG-NFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNL 118
P L+NL + +L +GG N L P + + L +L + + ++ P F+ + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 119 TYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNL-TVLRLATNKF 177
LD S N LSG +P + ++L L + N+ G + + S L T + ++ N+
Sbjct: 128 VTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 178 SGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCT 237
+G IP + N+ V+L N G G KN Q + L N+L + ++GL
Sbjct: 187 TGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSK 244
Query: 238 NLSFLAL 244
NL+ L L
Sbjct: 245 NLNGLDL 251
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 103/275 (37%), Gaps = 55/275 (20%)
Query: 205 IPSSLGQLKNLQHLDLR-MNALNSTIPPELGLCTNLSFLALAMXXXXXXXXXXXXXXXXX 263
IPSSL L L L + +N L IPP + T L +L +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN--------------- 112
Query: 264 XXXXXXDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFS 323
+SG I + + L +L N+ G +PP I L L + N S
Sbjct: 113 ---------VSGAI-PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 324 GPIPSEIGKLTSL-EKLDLSGNQLSGTIPPX-------------------XXXXXXXXXX 363
G IP G + L + +S N+L+G IPP
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 364 XXXXXXXXGTIPPEIGSMA---SLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSG 420
++ ++G + +L D+ N+++G LP+ +++L L+ +V NN G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Query: 421 SIP--GDFGKFSPSLINVSFSNNSFSGELPYELCS 453
IP G+ +F S +++NN P C+
Sbjct: 283 EIPQGGNLQRFDVS----AYANNKCLCGSPLPACT 313
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 6/125 (4%)
Query: 448 PYELCSGFA----LEELTVNG-NNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVH 502
PY + S A L L + G NN G +P + + L+ + +G I
Sbjct: 65 PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124
Query: 503 PRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGV-LSLDSN 561
L + S N G + P NL + D N+ISG IP G+ ++L +++ N
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184
Query: 562 ELTGK 566
LTGK
Sbjct: 185 RLTGK 189
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 77/162 (47%), Gaps = 5/162 (3%)
Query: 70 VRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFIL-TCRNLTYLDLSLNKL 128
VRYL LGGN L D S + +LT+L L N+L P+ + NL L L N+L
Sbjct: 65 VRYLALGGNKLH--DISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQL 121
Query: 129 SGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLM 188
L P+ +F L L YLNL NQ Q KL+NLT L L+ N+ G +
Sbjct: 122 QSL-PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL 180
Query: 189 SNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIP 230
+ ++ + L+ N +L +LQ++ L N + T P
Sbjct: 181 TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 16/179 (8%)
Query: 38 SEMGDLSELQYLSVYNNSL----NGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPS 93
S + +L+ L YL + N L NG F +L+NL++ L L N L++ F + +
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFD-KLTNLKE---LVLVENQLQSLPDGVFDKLTN 134
Query: 94 LTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQF 153
LT+L+L +N+L NLT LDLS N+L L PE +F L +L+ L L NQ
Sbjct: 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL-PEGVFDKLTQLKDLRLYQNQL 193
Query: 154 QGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQL 212
+ +L++L + L N + PG I+ + + N +G + +S G +
Sbjct: 194 KSVPDGVFDRLTSLQYIWLHDNPWDCTCPG-------IRYLSEWINKHSGVVRNSAGSV 245
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 87/195 (44%), Gaps = 3/195 (1%)
Query: 35 SIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSL 94
+IPS + ++ + L + +N L+ L K+R L L N L+T F + +L
Sbjct: 30 AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87
Query: 95 THLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQ 154
L + N+L NL L L N+L L P R+F +L KL YL+L N+ Q
Sbjct: 88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSL-PPRVFDSLTKLTYLSLGYNELQ 146
Query: 155 GKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKN 214
KL++L LRL N+ G ++ ++ ++L NN + L+
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK 206
Query: 215 LQHLDLRMNALNSTI 229
L+ L L+ N + T
Sbjct: 207 LKMLQLQENPWDCTC 221
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 64/158 (40%), Gaps = 4/158 (2%)
Query: 89 SNMPSLTH-LSLCYNELTLEFPSFIL-TCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYL 146
SN+P+ T L L N+L+ PS L L L+ NKL L P +F L LE L
Sbjct: 33 SNIPADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETL 90
Query: 147 NLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIP 206
+TDN+ Q +L NL LRL N+ P ++ + + L N
Sbjct: 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK 150
Query: 207 SSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLAL 244
+L +L+ L L N L T L L L
Sbjct: 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL 188
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 40/107 (37%)
Query: 457 LEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFI 516
LE L V N NL +R D NQ R F +L ++ L N
Sbjct: 87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146
Query: 517 GEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNEL 563
+ + +L L+L N++ LT L L LD+N+L
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 288 LESLQIQNNSFMGNIPPEI-GLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQL 346
L L++ N + ++PP + LTKL YL L N KLTSL++L L NQL
Sbjct: 111 LAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169
Query: 347 S 347
Sbjct: 170 K 170
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 77/170 (45%), Gaps = 9/170 (5%)
Query: 35 SIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSL 94
S+PS G ++ + L + + L L K+ +L+L N L+T F ++ L
Sbjct: 28 SVPS--GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85
Query: 95 THLSLCYNELTLEFPSFILTCRNLTYLD---LSLNKLSGLIPERLFTNLGKLEYLNLTDN 151
L L N+L P + +LT LD L N+L L P +F L KL+ L L N
Sbjct: 86 GTLGLANNQLA-SLPLGVF--DHLTQLDKLYLGGNQLKSL-PSGVFDRLTKLKELRLNTN 141
Query: 152 QFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSF 201
Q Q + KL+NL L L+TN+ G + +Q + LF N F
Sbjct: 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 1/156 (0%)
Query: 73 LDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLI 132
LDL L T + F + LT L+L YN+L L L L+ N+L+ L
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL- 98
Query: 133 PERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQ 192
P +F +L +L+ L L NQ + S +L+ L LRL TN+ G ++N+Q
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 193 LVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNST 228
+ L N + +L LQ + L N + +
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 1/125 (0%)
Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP 180
LDL L+ L + F L KL +LNL NQ Q + L+ L L LA N+ +
Sbjct: 40 LDLQSTGLATL-SDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLS 240
G ++ + + L N +L L+ L L N L S TNL
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 241 FLALA 245
L+L+
Sbjct: 159 TLSLS 163
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 77/170 (45%), Gaps = 9/170 (5%)
Query: 35 SIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSL 94
S+PS G ++ + L + + L L K+ +L+L N L+T F ++ L
Sbjct: 28 SVPS--GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85
Query: 95 THLSLCYNELTLEFPSFILTCRNLTYLD---LSLNKLSGLIPERLFTNLGKLEYLNLTDN 151
L L N+L P + +LT LD L N+L L P +F L KL+ L L N
Sbjct: 86 GTLGLANNQLA-SLPLGVF--DHLTQLDKLYLGGNQLKSL-PSGVFDRLTKLKELRLNTN 141
Query: 152 QFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSF 201
Q Q + KL+NL L L+TN+ G + +Q + LF N F
Sbjct: 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 1/156 (0%)
Query: 73 LDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLI 132
LDL L T + F + LT L+L YN+L L L L+ N+L+ L
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL- 98
Query: 133 PERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQ 192
P +F +L +L+ L L NQ + S +L+ L LRL TN+ G ++N+Q
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 193 LVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNST 228
+ L N + +L LQ + L N + +
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 1/125 (0%)
Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP 180
LDL L+ L + F L KL +LNL NQ Q + L+ L L LA N+ +
Sbjct: 40 LDLQSTGLATL-SDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLS 240
G ++ + + L N +L L+ L L N L S TNL
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 241 FLALA 245
L+L+
Sbjct: 159 TLSLS 163
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 69/150 (46%), Gaps = 5/150 (3%)
Query: 70 VRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFIL-TCRNLTYLDLSLNKL 128
VRYL LGGN L D S + +LT+L L N+L P+ + NL L L N+L
Sbjct: 65 VRYLALGGNKLH--DISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQL 121
Query: 129 SGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLM 188
L P+ +F L L YL L NQ Q KL+NLT L L N+ G +
Sbjct: 122 QSL-PDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKL 180
Query: 189 SNIQLVELFNNSFTGQIPSSLGQLKNLQHL 218
+ ++ + L +N +L +L H+
Sbjct: 181 TQLKQLSLNDNQLKSVPDGVFDRLTSLTHI 210
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 74/144 (51%), Gaps = 9/144 (6%)
Query: 38 SEMGDLSELQYLSVYNNSL----NGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPS 93
S + +L+ L YL + N L NG F +L+NL++ L L N L++ F + +
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFD-KLTNLKE---LVLVENQLQSLPDGVFDKLTN 134
Query: 94 LTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQF 153
LT+L L +N+L NLT LDL N+L L PE +F L +L+ L+L DNQ
Sbjct: 135 LTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSL-PEGVFDKLTQLKQLSLNDNQL 193
Query: 154 QGKLSPNVSKLSNLTVLRLATNKF 177
+ +L++LT + L N +
Sbjct: 194 KSVPDGVFDRLTSLTHIWLLNNPW 217
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 3/111 (2%)
Query: 117 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNK 176
N+ YL L NKL + + TNL YL LT NQ Q + KL+NL L L N+
Sbjct: 64 NVRYLALGGNKLHDISALKELTNL---TYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120
Query: 177 FSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNS 227
G ++N+ + L++N +L NL LDL N L S
Sbjct: 121 LQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS 171
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 309 LTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSG 348
LT L YL+LY N KLT+L +LDL NQL
Sbjct: 132 LTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS 171
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 5/137 (3%)
Query: 309 LTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPXXXXXXXXXXXXXXXX 368
LT L YL L N KLT+L++L L NQL ++P
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLYLYH 142
Query: 369 XXXGTIPPEI-GSMASLVAFDVNTNQLHGELPENI-SRLVNLNKFSVFTNNFSGSIPGDF 426
++P + + +L D++ NQL LPE + +L L + S+ N G F
Sbjct: 143 NQLQSLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLNDNQLKSVPDGVF 201
Query: 427 GKFSPSLINVSFSNNSF 443
+ + SL ++ NN +
Sbjct: 202 DRLT-SLTHIWLLNNPW 217
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 138/312 (44%), Gaps = 49/312 (15%)
Query: 40 MGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSL 99
+ +L+ L L+++NN + P L NL + L+L N + D S S + SL L+
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS--DISALSGLTSLQQLNF 158
Query: 100 CYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSP 159
N++T P LT L LD+S NK+S + + L LE L T+NQ ++P
Sbjct: 159 G-NQVTDLKPLANLTT--LERLDISSNKVSDI---SVLAKLTNLESLIATNNQI-SDITP 211
Query: 160 NVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLD 219
+ L+NL L L N+ G + ++N+ ++L NN + P L L L L
Sbjct: 212 -LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK 266
Query: 220 LRMNALNSTIPPELGLCTNLSFLALAMXXXXXXXXXXXXXXXXXXXXXXXDNFLSGEISA 279
L N + S I P GL T L+ L L +N L +IS
Sbjct: 267 LGANQI-SNISPLAGL-TALTNLEL------------------------NENQLE-DISP 299
Query: 280 NLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKL 339
I N L L + N+ + +I P + LTKLQ LF Y N S S + LT++ L
Sbjct: 300 --ISNLKNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWL 353
Query: 340 DLSGNQLSGTIP 351
NQ+S P
Sbjct: 354 SAGHNQISDLTP 365
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 100/227 (44%), Gaps = 43/227 (18%)
Query: 125 LNKLSGLIPERL-FTNLGKLEYLN-LTDNQFQGKLSPNVSKLSNLTVLR---LATNKFSG 179
L++++ L +RL ++ +EYLN LT F +++ L NLT L + N+ +
Sbjct: 40 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 99
Query: 180 PIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNL 239
P + ++N+ + LFNN T P L L NL L+L N + S I GL T+L
Sbjct: 100 ITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI-SDISALSGL-TSL 153
Query: 240 SFLALAMXXXXXXXXXXXXXXXXXXXXXXXDNFLSGEISANLIGNWTELESLQIQNNSFM 299
L NF + + N T LE L I +N +
Sbjct: 154 QQL----------------------------NFGNQVTDLKPLANLTTLERLDISSNK-V 184
Query: 300 GNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQL 346
+I + LT L+ L N S P +G LT+L++L L+GNQL
Sbjct: 185 SDISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 228
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 118/272 (43%), Gaps = 53/272 (19%)
Query: 84 DWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKL 143
D + N+ L + + N++ P LT NLT L L N+++ + P + TNL +L
Sbjct: 77 DITPLKNLTKLVDILMNNNQIADITPLANLT--NLTGLTLFNNQITDIDPLKNLTNLNRL 134
Query: 144 EYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTG 203
E L+ N ++S LS LT L+ F + D+ ++N+ +E + S +
Sbjct: 135 E---LSSNTIS-----DISALSGLTSLQQL--NFGNQVT-DLKPLANLTTLERLDIS-SN 182
Query: 204 QIP--SSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMXXXXXXXXXXXXXXX 261
++ S L +L NL+ L N ++ P LG+ TNL L+
Sbjct: 183 KVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELS------------------ 222
Query: 262 XXXXXXXXDNFLSGEISANL--IGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYR 319
L+G ++ + + T L L + NN + N+ P G LTKL L L
Sbjct: 223 -----------LNGNQLKDIGTLASLTNLTDLDLANNQ-ISNLAPLSG-LTKLTELKLGA 269
Query: 320 NHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIP 351
N S P + LT+L L+L+ NQL P
Sbjct: 270 NQISNISP--LAGLTALTNLELNENQLEDISP 299
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 77/176 (43%), Gaps = 23/176 (13%)
Query: 64 LSNLRKVRYLDLGGNFLETPDWS--KFSNMPSLTHLSLCYNE-LTLEFPSFILTCRNLTY 120
L L ++ LDL + +E D + N+ L +L+L YNE L LE +F C L
Sbjct: 345 LEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFK-ECPQLEL 403
Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFS-G 179
LD++ L P F NL L LNL+ ++ L +L L L N F G
Sbjct: 404 LDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDG 463
Query: 180 PIPG----------DIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNAL 225
I +I ++S+ L+ + +F G L+N+ HLDL N+L
Sbjct: 464 SISKTNLLQMVGSLEILILSSCNLLSIDQQAFHG--------LRNVNHLDLSHNSL 511
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 90/205 (43%), Gaps = 19/205 (9%)
Query: 40 MGDLSELQYLSVYNNSLNGA--FPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHL 97
+ L LQ L + ++ + + QL NLR ++YL+L N + F P L L
Sbjct: 345 LEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELL 404
Query: 98 SLCYNELTLEFPS------FILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDN 151
+ + L ++ P +L NL++ L + + L L L +LNL N
Sbjct: 405 DVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSN------QHLLAGLQDLRHLNLQGN 458
Query: 152 QFQ-GKLSPN--VSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSS 208
FQ G +S + + +L +L L++ + N+ ++L +NS TG +
Sbjct: 459 SFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDA 518
Query: 209 LGQLKNLQHLDLRMNALNSTIPPEL 233
L LK L +L++ N + IPP L
Sbjct: 519 LSHLKGL-YLNMASNNI-RIIPPHL 541
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 15/167 (8%)
Query: 49 LSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEF 108
L + +N + P L NL K+ L+L GN L+ + S + + S+ L L ++T
Sbjct: 74 LELKDNQITDLTP--LKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDVT 129
Query: 109 PSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLT 168
P L+ + YLDL N+++ + P TN L+YL++ +NQ L+P ++ LS LT
Sbjct: 130 PLAGLSNLQVLYLDL--NQITNISPLAGLTN---LQYLSIGNNQV-NDLTP-LANLSKLT 182
Query: 169 VLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNL 215
LR NK S P + + N+ V L +N + P L L NL
Sbjct: 183 TLRADDNKISDISP--LASLPNLIEVHLKDNQISDVSP--LANLSNL 225
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 38 SEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHL 97
S + L+ LQYLS+ NN +N P L+NL K+ L N + D S +++P+L +
Sbjct: 151 SPLAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKIS--DISPLASLPNLIEV 206
Query: 98 SLCYNELT 105
L N+++
Sbjct: 207 HLKDNQIS 214
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 117 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNK 176
+LT L L NKL L P +F L L YLNL+ NQ Q + KL+ L L L TN+
Sbjct: 53 SLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ 111
Query: 177 FSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIP 230
G ++ ++ + L+ N +L +LQ++ L N + T P
Sbjct: 112 LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 18/185 (9%)
Query: 33 EGSIPSEMGDLSELQYLSVYNNSL----NGAFPFQLSNLRKVRYLDLGGNFLETPDWSKF 88
+G G ++ YL + NSL NG F L + L LGGN L++ F
Sbjct: 17 QGRTSVPTGIPAQTTYLDLETNSLKSLPNGVF----DELTSLTQLYLGGNKLQSLPNGVF 72
Query: 89 SNMPSLTHLSLCYNELTLEFPSFIL-TCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLN 147
+ + SLT+L+L N+L P+ + L L L+ N+L L P+ +F L +L+ L
Sbjct: 73 NKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSL-PDGVFDKLTQLKDLR 130
Query: 148 LTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPS 207
L NQ + +L++L + L N + PG I+ + + N +G + +
Sbjct: 131 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG-------IRYLSEWINKHSGVVRN 183
Query: 208 SLGQL 212
S G +
Sbjct: 184 SAGSV 188
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 66/129 (51%), Gaps = 14/129 (10%)
Query: 40 MGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSL 99
+ L+ L L + NN ++ P LS L K+ L LG N + + S + + +LT+L L
Sbjct: 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN--QISNISPLAGLTALTNLEL 294
Query: 100 CYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSP 159
NE LE S I +NLTYL L N +S + P T L +L + + K+S
Sbjct: 295 --NENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF-------YNNKVS- 344
Query: 160 NVSKLSNLT 168
+VS L+NLT
Sbjct: 345 DVSSLANLT 353
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 100/231 (43%), Gaps = 51/231 (22%)
Query: 125 LNKLSGLIPERL-FTNLGKLEYLN-LTDNQFQGKLSPNVSKLSNLTVLR---LATNKFSG 179
L++++ L +RL ++ +EYLN LT F +++ L NLT L + N+ +
Sbjct: 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 104
Query: 180 PIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCT-- 237
P + ++N+ + LFNN T P L L NL L+L N + S I GL +
Sbjct: 105 ITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI-SDISALSGLTSLQ 159
Query: 238 NLSFLALAMXXXXXXXXXXXXXXXXXXXXXXXDNFLSGEISANL--IGNWTELESLQIQN 295
LSF G +L + N T LE L I +
Sbjct: 160 QLSF---------------------------------GNQVTDLKPLANLTTLERLDISS 186
Query: 296 NSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQL 346
N + +I + LT L+ L N S P +G LT+L++L L+GNQL
Sbjct: 187 NK-VSDISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 233
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 119/272 (43%), Gaps = 53/272 (19%)
Query: 84 DWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKL 143
D + N+ L + + N++ P LT NLT L L N+++ + P + TNL +L
Sbjct: 82 DITPLKNLTKLVDILMNNNQIADITPLANLT--NLTGLTLFNNQITDIDPLKNLTNLNRL 139
Query: 144 EYLNLTDNQFQGKLSPNVSKLSNLTVLRLAT--NKFSGPIPGDIGLMSNIQLVELFNNSF 201
E L+ N ++S LS LT L+ + N+ + P + ++ ++ +++ +N
Sbjct: 140 E---LSSNTIS-----DISALSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKV 189
Query: 202 TGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMXXXXXXXXXXXXXXX 261
+ S L +L NL+ L N ++ P LG+ TNL L+
Sbjct: 190 SD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELS------------------ 227
Query: 262 XXXXXXXXDNFLSGEISANL--IGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYR 319
L+G ++ + + T L L + NN + N+ P G LTKL L L
Sbjct: 228 -----------LNGNQLKDIGTLASLTNLTDLDLANNQ-ISNLAPLSG-LTKLTELKLGA 274
Query: 320 NHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIP 351
N S P + LT+L L+L+ NQL P
Sbjct: 275 NQISNISP--LAGLTALTNLELNENQLEDISP 304
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 66/129 (51%), Gaps = 14/129 (10%)
Query: 40 MGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSL 99
+ L+ L L + NN ++ P LS L K+ L LG N + + S + + +LT+L L
Sbjct: 238 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN--QISNISPLAGLTALTNLEL 293
Query: 100 CYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSP 159
NE LE S I +NLTYL L N +S + P T L +L + N K+S
Sbjct: 294 --NENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFAN-------NKVS- 343
Query: 160 NVSKLSNLT 168
+VS L+NLT
Sbjct: 344 DVSSLANLT 352
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 100/231 (43%), Gaps = 51/231 (22%)
Query: 125 LNKLSGLIPERL-FTNLGKLEYLN-LTDNQFQGKLSPNVSKLSNLTVLR---LATNKFSG 179
L++++ L +RL ++ +EYLN LT F +++ L NLT L + N+ +
Sbjct: 44 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 103
Query: 180 PIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCT-- 237
P + ++N+ + LFNN T P L L NL L+L N + S I GL +
Sbjct: 104 ITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI-SDISALSGLTSLQ 158
Query: 238 NLSFLALAMXXXXXXXXXXXXXXXXXXXXXXXDNFLSGEISANL--IGNWTELESLQIQN 295
LSF G +L + N T LE L I +
Sbjct: 159 QLSF---------------------------------GNQVTDLKPLANLTTLERLDISS 185
Query: 296 NSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQL 346
N + +I + LT L+ L N S P +G LT+L++L L+GNQL
Sbjct: 186 NK-VSDISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 232
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 117/270 (43%), Gaps = 49/270 (18%)
Query: 84 DWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKL 143
D + N+ L + + N++ P LT NLT L L N+++ + P + TNL +L
Sbjct: 81 DITPLKNLTKLVDILMNNNQIADITPLANLT--NLTGLTLFNNQITDIDPLKNLTNLNRL 138
Query: 144 EYLNLTDNQFQGKLSPNVSKLSNLTVLRLAT--NKFSGPIPGDIGLMSNIQLVELFNNSF 201
E L+ N ++S LS LT L+ + N+ + P + ++ ++ +++ +N
Sbjct: 139 E---LSSNTIS-----DISALSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKV 188
Query: 202 TGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMXXXXXXXXXXXXXXX 261
+ S L +L NL+ L N ++ P LG+ TNL L+L
Sbjct: 189 SD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL----------------- 227
Query: 262 XXXXXXXXDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNH 321
N L + + T L L + NN + N+ P G LTKL L L N
Sbjct: 228 -------NGNQLK---DIGTLASLTNLTDLDLANNQ-ISNLAPLSG-LTKLTELKLGANQ 275
Query: 322 FSGPIPSEIGKLTSLEKLDLSGNQLSGTIP 351
S P + LT+L L+L+ NQL P
Sbjct: 276 ISNISP--LAGLTALTNLELNENQLEDISP 303
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 66/129 (51%), Gaps = 14/129 (10%)
Query: 40 MGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSL 99
+ L+ L L + NN ++ P LS L K+ L LG N + + S + + +LT+L L
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN--QISNISPLAGLTALTNLEL 290
Query: 100 CYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSP 159
NE LE S I +NLTYL L N +S + P T L +L + + K+S
Sbjct: 291 --NENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF-------YNNKVS- 340
Query: 160 NVSKLSNLT 168
+VS L+NLT
Sbjct: 341 DVSSLANLT 349
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 103/228 (45%), Gaps = 44/228 (19%)
Query: 125 LNKLSGLIPERL-FTNLGKLEYLN-LTDNQFQGKLSPNVSKLSNLTVLR---LATNKFSG 179
L++++ L +RL ++ +EYLN LT F +++ L NLT L + N+ +
Sbjct: 40 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 99
Query: 180 PIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNL 239
P + ++N+ + LFNN T P L L NL L+L N + S I GL T+L
Sbjct: 100 ITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI-SDISALSGL-TSL 153
Query: 240 SFLALAMXXXXXXXXXXXXXXXXXXXXXXXDNFLSGEISA-NLIGNWTELESLQIQNNSF 298
L NF S +++ + N T LE L I +N
Sbjct: 154 QQL----------------------------NFSSNQVTDLKPLANLTTLERLDISSNK- 184
Query: 299 MGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQL 346
+ +I + LT L+ L N S P +G LT+L++L L+GNQL
Sbjct: 185 VSDISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 229
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 118/272 (43%), Gaps = 52/272 (19%)
Query: 84 DWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKL 143
D + N+ L + + N++ P LT NLT L L N+++ + P + TNL +L
Sbjct: 77 DITPLKNLTKLVDILMNNNQIADITPLANLT--NLTGLTLFNNQITDIDPLKNLTNLNRL 134
Query: 144 EYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTG 203
E L+ N ++S LS LT L+ FS D+ ++N+ +E + S +
Sbjct: 135 E---LSSNTIS-----DISALSGLTSLQQL--NFSSNQVTDLKPLANLTTLERLDIS-SN 183
Query: 204 QIP--SSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMXXXXXXXXXXXXXXX 261
++ S L +L NL+ L N ++ P LG+ TNL L+
Sbjct: 184 KVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELS------------------ 223
Query: 262 XXXXXXXXDNFLSGEISANL--IGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYR 319
L+G ++ + + T L L + NN + N+ P G LTKL L L
Sbjct: 224 -----------LNGNQLKDIGTLASLTNLTDLDLANNQ-ISNLAPLSG-LTKLTELKLGA 270
Query: 320 NHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIP 351
N S P + LT+L L+L+ NQL P
Sbjct: 271 NQISNISP--LAGLTALTNLELNENQLEDISP 300
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 66/129 (51%), Gaps = 14/129 (10%)
Query: 40 MGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSL 99
+ L+ L L + NN ++ P LS L K+ L LG N + + S + + +LT+L L
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN--QISNISPLAGLTALTNLEL 290
Query: 100 CYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSP 159
NE LE S I +NLTYL L N +S + P T L +L + + K+S
Sbjct: 291 --NENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF-------YNNKVS- 340
Query: 160 NVSKLSNLT 168
+VS L+NLT
Sbjct: 341 DVSSLANLT 349
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 103/228 (45%), Gaps = 44/228 (19%)
Query: 125 LNKLSGLIPERL-FTNLGKLEYLN-LTDNQFQGKLSPNVSKLSNLTVLR---LATNKFSG 179
L++++ L +RL ++ +EYLN LT F +++ L NLT L + N+ +
Sbjct: 40 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 99
Query: 180 PIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNL 239
P + ++N+ + LFNN T P L L NL L+L N + S I GL T+L
Sbjct: 100 ITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI-SDISALSGL-TSL 153
Query: 240 SFLALAMXXXXXXXXXXXXXXXXXXXXXXXDNFLSGEISA-NLIGNWTELESLQIQNNSF 298
L+ F S +++ + N T LE L I +N
Sbjct: 154 QQLS----------------------------FSSNQVTDLKPLANLTTLERLDISSNK- 184
Query: 299 MGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQL 346
+ +I + LT L+ L N S P +G LT+L++L L+GNQL
Sbjct: 185 VSDISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 229
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 119/272 (43%), Gaps = 52/272 (19%)
Query: 84 DWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKL 143
D + N+ L + + N++ P LT NLT L L N+++ + P + TNL +L
Sbjct: 77 DITPLKNLTKLVDILMNNNQIADITPLANLT--NLTGLTLFNNQITDIDPLKNLTNLNRL 134
Query: 144 EYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTG 203
E L+ N ++S LS LT L+ + FS D+ ++N+ +E + S +
Sbjct: 135 E---LSSNTIS-----DISALSGLTSLQQLS--FSSNQVTDLKPLANLTTLERLDIS-SN 183
Query: 204 QIP--SSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMXXXXXXXXXXXXXXX 261
++ S L +L NL+ L N ++ P LG+ TNL L+
Sbjct: 184 KVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELS------------------ 223
Query: 262 XXXXXXXXDNFLSGEISANL--IGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYR 319
L+G ++ + + T L L + NN + N+ P G LTKL L L
Sbjct: 224 -----------LNGNQLKDIGTLASLTNLTDLDLANNQ-ISNLAPLSG-LTKLTELKLGA 270
Query: 320 NHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIP 351
N S P + LT+L L+L+ NQL P
Sbjct: 271 NQISNISP--LAGLTALTNLELNENQLEDISP 300
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 14/129 (10%)
Query: 40 MGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSL 99
+ L+ L L + NN ++ P LS L K+ L LG N + + S + + +LT+L L
Sbjct: 234 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN--QISNISPLAGLTALTNLEL 289
Query: 100 CYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSP 159
NE LE S I +NLTYL L N +S + P ++L KL+ L ++N+
Sbjct: 290 --NENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFSNNKVS----- 339
Query: 160 NVSKLSNLT 168
+VS L+NLT
Sbjct: 340 DVSSLANLT 348
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 100/227 (44%), Gaps = 43/227 (18%)
Query: 125 LNKLSGLIPERL-FTNLGKLEYLN-LTDNQFQGKLSPNVSKLSNLTVLR---LATNKFSG 179
L++++ L +RL ++ +EYLN LT F +++ L NLT L + N+ +
Sbjct: 40 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 99
Query: 180 PIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNL 239
P + ++N+ + LFNN T P L L NL L+L N + S I GL T+L
Sbjct: 100 ITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI-SDISALSGL-TSL 153
Query: 240 SFLALAMXXXXXXXXXXXXXXXXXXXXXXXDNFLSGEISANLIGNWTELESLQIQNNSFM 299
L NF + + N T LE L I +N +
Sbjct: 154 QQL----------------------------NFGNQVTDLKPLANLTTLERLDISSNK-V 184
Query: 300 GNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQL 346
+I + LT L+ L N S P +G LT+L++L L+GNQL
Sbjct: 185 SDISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 228
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 116/271 (42%), Gaps = 51/271 (18%)
Query: 84 DWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKL 143
D + N+ L + + N++ P LT NLT L L N+++ + P + TNL +L
Sbjct: 77 DITPLKNLTKLVDILMNNNQIADITPLANLT--NLTGLTLFNNQITDIDPLKNLTNLNRL 134
Query: 144 EYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFN-NSFT 202
E L+ N ++S LS LT L+ F + D+ ++N+ +E + +S
Sbjct: 135 E---LSSNTIS-----DISALSGLTSLQQL--NFGNQVT-DLKPLANLTTLERLDISSNK 183
Query: 203 GQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMXXXXXXXXXXXXXXXX 262
S L +L NL+ L N ++ P LG+ TNL L+
Sbjct: 184 VSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELS------------------- 222
Query: 263 XXXXXXXDNFLSGEISANL--IGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRN 320
L+G ++ + + T L L + NN + N+ P G LTKL L L N
Sbjct: 223 ----------LNGNQLKDIGTLASLTNLTDLDLANNQ-ISNLAPLSG-LTKLTELKLGAN 270
Query: 321 HFSGPIPSEIGKLTSLEKLDLSGNQLSGTIP 351
S P + LT+L L+L+ NQL P
Sbjct: 271 QISNISP--LAGLTALTNLELNENQLEDISP 299
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 14/129 (10%)
Query: 40 MGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSL 99
+ L+ L L + NN ++ P LS L K+ L LG N + + S + + +LT+L L
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN--QISNISPLAGLTALTNLEL 290
Query: 100 CYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSP 159
N+L E S I +NLTYL L N +S + P ++L KL+ L ++N+
Sbjct: 291 NENQL--EDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFSNNKVS----- 340
Query: 160 NVSKLSNLT 168
+VS L+NLT
Sbjct: 341 DVSSLANLT 349
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 103/228 (45%), Gaps = 44/228 (19%)
Query: 125 LNKLSGLIPERL-FTNLGKLEYLN-LTDNQFQGKLSPNVSKLSNLTVLR---LATNKFSG 179
L++++ L +RL ++ +EYLN LT F +++ L NLT L + N+ +
Sbjct: 40 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 99
Query: 180 PIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNL 239
P + ++N+ + LFNN T P L L NL L+L N + S I GL T+L
Sbjct: 100 ITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI-SDISALSGL-TSL 153
Query: 240 SFLALAMXXXXXXXXXXXXXXXXXXXXXXXDNFLSGEISA-NLIGNWTELESLQIQNNSF 298
L+ F S +++ + N T LE L I +N
Sbjct: 154 QQLS----------------------------FSSNQVTDLKPLANLTTLERLDISSNK- 184
Query: 299 MGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQL 346
+ +I + LT L+ L N S P +G LT+L++L L+GNQL
Sbjct: 185 VSDISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 229
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 119/272 (43%), Gaps = 52/272 (19%)
Query: 84 DWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKL 143
D + N+ L + + N++ P LT NLT L L N+++ + P + TNL +L
Sbjct: 77 DITPLKNLTKLVDILMNNNQIADITPLANLT--NLTGLTLFNNQITDIDPLKNLTNLNRL 134
Query: 144 EYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTG 203
E L+ N ++S LS LT L+ + FS D+ ++N+ +E + S +
Sbjct: 135 E---LSSNTIS-----DISALSGLTSLQQLS--FSSNQVTDLKPLANLTTLERLDIS-SN 183
Query: 204 QIP--SSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMXXXXXXXXXXXXXXX 261
++ S L +L NL+ L N ++ P LG+ TNL L+
Sbjct: 184 KVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELS------------------ 223
Query: 262 XXXXXXXXDNFLSGEISANL--IGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYR 319
L+G ++ + + T L L + NN + N+ P G LTKL L L
Sbjct: 224 -----------LNGNQLKDIGTLASLTNLTDLDLANNQ-ISNLAPLSG-LTKLTELKLGA 270
Query: 320 NHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIP 351
N S P + LT+L L+L+ NQL P
Sbjct: 271 NQISNISP--LAGLTALTNLELNENQLEDISP 300
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 65/147 (44%), Gaps = 1/147 (0%)
Query: 60 FPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLT 119
F F+ V+ DL + + S FS+ L L+L NE+ + +L
Sbjct: 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326
Query: 120 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSG 179
L+LS N L G I R+F NL KLE L+L+ N + + L NL L L TN+
Sbjct: 327 KLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS 385
Query: 180 PIPGDIGLMSNIQLVELFNNSFTGQIP 206
G ++++Q + L N + P
Sbjct: 386 VPDGIFDRLTSLQKIWLHTNPWDCSCP 412
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 2/130 (1%)
Query: 36 IPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLT 95
+ S ++L+ L++ N +N L + L+L NFL + D F N+ L
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350
Query: 96 HLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQG 155
L L YN + L NL L L N+L +P+ +F L L+ + L N +
Sbjct: 351 VLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC 409
Query: 156 KLSPNVSKLS 165
P + LS
Sbjct: 410 S-CPRIDYLS 418
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 20/130 (15%)
Query: 117 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLN---------LTDNQFQGKLSPNVSKLSNL 167
++ Y+DLSLN ++ L E F+ L L++L + +N F+G S + KL
Sbjct: 31 HVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 168 TVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSS--LGQLKNLQHLDLRMNAL 225
L+L T F+G ++N++++ L + G + S L +L+ L LR N +
Sbjct: 90 QFLQLETGAFNG--------LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI 141
Query: 226 NSTIPPELGL 235
P L
Sbjct: 142 KKIQPASFFL 151
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 89/195 (45%), Gaps = 34/195 (17%)
Query: 42 DLSELQYLSVYNNSLNGAFPFQLSNL--RKVRYLDLGGNFLETPDWSKFSNMPSLTHLSL 99
DL L++L + N L+ S+ ++YLDL N + T S F + L HL
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDF 403
Query: 100 CYNELTL--EFPSFILTCRNLTYLDLS-----------LNKLSGL--------------I 132
++ L EF F L+ RNL YLD+S N LS L +
Sbjct: 404 QHSNLKQMSEFSVF-LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462
Query: 133 PERLFTNLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRLATNKFSGPIPGDIGLMSNI 191
P+ +FT L L +L+L+ Q + +LSP + LS+L VL +A+N+ G ++++
Sbjct: 463 PD-IFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520
Query: 192 QLVELFNNSFTGQIP 206
Q + L N + P
Sbjct: 521 QKIWLHTNPWDCSCP 535
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 91/210 (43%), Gaps = 25/210 (11%)
Query: 47 QYLSVYNNSLNGAFP-FQLSNLRKVRYL-DLGGNFLETPDWSKFSNMPSLTHLSLCYNEL 104
Q+L + N G FP +L +L+++ + + GGN D +PSL L L N L
Sbjct: 307 QHLELVNCKF-GQFPTLKLKSLKRLTFTSNKGGNAFSEVD------LPSLEFLDLSRNGL 359
Query: 105 TLEFPSFILTCR-------NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKL 157
SF C +L YLDLS N + + F L +LE+L+ + +
Sbjct: 360 -----SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQHSNLKQMS 412
Query: 158 SPNVS-KLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQ-IPSSLGQLKNL 215
+V L NL L ++ G +S+++++++ NSF +P +L+NL
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472
Query: 216 QHLDLRMNALNSTIPPELGLCTNLSFLALA 245
LDL L P ++L L +A
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 505 LDFIRLSGNHFIGEISPD-WGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNEL 563
L+ ++++GN F PD + E RNL+ L L + ++ P +L+ L VL++ SN+L
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 75/179 (41%), Gaps = 22/179 (12%)
Query: 70 VRYLDLGGNFLETPDWSKFSNMP-SLTHLSLCYNEL----TLEFPSFILTCRNLTYLDLS 124
+ Y + NF + PD N+P S +L L +N L + F SF L LDLS
Sbjct: 10 ITYQCMELNFYKIPD-----NLPFSTKNLDLSFNPLRHLGSYSFFSF----PELQVLDLS 60
Query: 125 LNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGD 184
++ I + + +L L L LT N Q S LS+L L +
Sbjct: 61 RCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 119
Query: 185 IGLMSNIQLVELFNNSFTG-QIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFL 242
IG + ++ + + +N ++P L NL+HLDL N + S CT+L L
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY------CTDLRVL 172
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 286 TELESLQIQNNSFMGNIPPEIGL-LTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGN 344
+ LE L++ NSF N P+I L L +L L + P+ L+SL+ L+++ N
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504
Query: 345 QLSGT 349
QL
Sbjct: 505 QLKSV 509
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 5/150 (3%)
Query: 277 ISANLIGNWTELESLQIQNNSFMGNIPPEIGL-LTKLQYLFLYRNHFSGPIPSEIGKLTS 335
+S+N +G +LE L Q+++ + L L L YL + H L+S
Sbjct: 388 MSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446
Query: 336 LEKLDLSGNQLSGTIPPXXXXXXXXXXXXXXXXXXXGTI-PPEIGSMASLVAFDVNTNQL 394
LE L ++GN P + P S++SL ++ +NQL
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Query: 395 HGELPENI-SRLVNLNKFSVFTNNFSGSIP 423
+P+ I RL +L K + TN + S P
Sbjct: 507 KS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 535
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 85/197 (43%), Gaps = 32/197 (16%)
Query: 64 LSNLRKVRYLDLGGNFLETPDWS--KFSNMPSLTHLSLCYNE-LTLEFPSFILTCRNLTY 120
L NL +R LDL + +ET D + N+ L L+L YNE L+L+ +F C L
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK-ECPQLEL 404
Query: 121 LDLSLNKLS------------------------GLIPERLFTNLGKLEYLNLTDNQF-QG 155
LDL+ +L + E+LF L L++LNL N F +G
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464
Query: 156 KLSP--NVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLK 213
+ ++ L L +L L+ S + + V+L +N T +L LK
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524
Query: 214 NLQHLDLRMNALNSTIP 230
+ +L+L N ++ +P
Sbjct: 525 GI-YLNLASNHISIILP 540
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 72/169 (42%), Gaps = 7/169 (4%)
Query: 60 FPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILT-CRNL 118
P L L ++ L L N E SN PSLTHLS+ N LE + L NL
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352
Query: 119 TYLDLSLNKLSGLIPERL-FTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKF 177
LDLS + + L NL L+ LNL+ N+ + + L +L LA +
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412
Query: 178 SGPIPGDIGLMSNIQLVELFNNSFTGQIPSS---LGQLKNLQHLDLRMN 223
+ N+ L+++ N S + SS L LQHL+L+ N
Sbjct: 413 K--VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 88 FSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLN 147
F +P L L L N+LT P+ ++ L L NK+ I ++F L +L+ LN
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE-ISNKMFLGLHQLKTLN 108
Query: 148 LTDNQFQGKLSPNVSKLSNLTVLRLATNKF 177
L DNQ + + L++LT L LA+N F
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 119 TYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRLATNKF 177
T L L+ N+L + + LF L L L L NQ G + PN S++ L+L NK
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKI 90
Query: 178 SGPIPGDIGL-MSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNS 227
I + L + ++ + L++N + +P S L +L L+L N N
Sbjct: 91 K-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 117 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNK 176
+L L+L N+L+G+ P F ++ L L +N+ + + L L L L N+
Sbjct: 55 HLVKLELKRNQLTGIEP-NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ 113
Query: 177 FSGPIPGDIGLMSNIQLVELFNNSF 201
S +PG ++++ + L +N F
Sbjct: 114 ISCVMPGSFEHLNSLTSLNLASNPF 138
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 72/143 (50%), Gaps = 11/143 (7%)
Query: 64 LSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDL 123
L NL K+ L+L GN L+ + S + + S+ L L ++T P L+ + YLDL
Sbjct: 81 LKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL 138
Query: 124 SLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPG 183
N+++ + P TN L+YL++ + Q L+P ++ LS LT L+ NK S P
Sbjct: 139 --NQITNISPLAGLTN---LQYLSIGNAQV-SDLTP-LANLSKLTTLKADDNKISDISP- 190
Query: 184 DIGLMSNIQLVELFNNSFTGQIP 206
+ + N+ V L NN + P
Sbjct: 191 -LASLPNLIEVHLKNNQISDVSP 212
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 38 SEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHL 97
S + L+ LQYLS+ N ++ P L+NL K+ L N + D S +++P+L +
Sbjct: 145 SPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS--DISPLASLPNLIEV 200
Query: 98 SLCYNELTLEFP------SFILTCRNLT 119
L N+++ P FI+T N T
Sbjct: 201 HLKNNQISDVSPLANTSNLFIVTLTNQT 228
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 88/211 (41%), Gaps = 27/211 (12%)
Query: 47 QYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELT- 105
+YL++ NS+ +LR + L L N + + F+ +PSL L L N LT
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 106 -----LEFPSFI--LTCRN----------------LTYLDLSLNKLSGLIPERLFTNLGK 142
E+ S + L RN L LDL K I E F L
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVN 157
Query: 143 LEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFT 202
L YLNL K PN++ L L L L+ N+ PG +++++ + L +
Sbjct: 158 LRYLNL--GMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVA 215
Query: 203 GQIPSSLGQLKNLQHLDLRMNALNSTIPPEL 233
++ LK+L+ L+L N L S +P +L
Sbjct: 216 TIERNAFDDLKSLEELNLSHNNLMS-LPHDL 245
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 64 LSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNEL-TLEFPSFILTCRNLTYLD 122
L+ L ++ L+L GN L+ F + SL L L + ++ T+E +F ++L L+
Sbjct: 174 LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFD-DLKSLEELN 232
Query: 123 LSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQ 154
LS N L L P LFT L +LE ++L N +
Sbjct: 233 LSHNNLMSL-PHDLFTPLHRLERVHLNHNPWH 263
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 88/211 (41%), Gaps = 27/211 (12%)
Query: 47 QYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELT- 105
+YL++ NS+ +LR + L L N + + F+ +PSL L L N LT
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 106 -----LEFPSFI--LTCRN----------------LTYLDLSLNKLSGLIPERLFTNLGK 142
E+ S + L RN L LDL K I E F L
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVN 157
Query: 143 LEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFT 202
L YLNL K PN++ L L L L+ N+ PG +++++ + L +
Sbjct: 158 LRYLNL--GMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVA 215
Query: 203 GQIPSSLGQLKNLQHLDLRMNALNSTIPPEL 233
++ LK+L+ L+L N L S +P +L
Sbjct: 216 TIERNAFDDLKSLEELNLSHNNLMS-LPHDL 245
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 64 LSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNEL-TLEFPSFILTCRNLTYLD 122
L+ L ++ L+L GN L+ F + SL L L + ++ T+E +F ++L L+
Sbjct: 174 LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFD-DLKSLEELN 232
Query: 123 LSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQ 154
LS N L L P LFT L +LE ++L N +
Sbjct: 233 LSHNNLMSL-PHDLFTPLHRLERVHLNHNPWH 263
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 92/203 (45%), Gaps = 12/203 (5%)
Query: 33 EGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNL--RKVRYLDLG--GNFLETPDWSKF 88
+GSI + L L YL + N+L+ + S+L +R+LDL G + + + F
Sbjct: 339 KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN---F 395
Query: 89 SNMPSLTHLSLCYNEL--TLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYL 146
+ L HL ++ L EF +F L+ L YLD+S + + + +F L L L
Sbjct: 396 MGLEELQHLDFQHSTLKRVTEFSAF-LSLEKLLYLDISYTN-TKIDFDGIFLGLTSLNTL 453
Query: 147 NLTDNQFQGKLSPNV-SKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQI 205
+ N F+ NV + +NLT L L+ + G + +QL+ + +N+
Sbjct: 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD 513
Query: 206 PSSLGQLKNLQHLDLRMNALNST 228
S QL +L LD N + ++
Sbjct: 514 SSHYNQLYSLSTLDCSFNRIETS 536
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 92/203 (45%), Gaps = 12/203 (5%)
Query: 33 EGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNL--RKVRYLDLG--GNFLETPDWSKF 88
+GSI + L L YL + N+L+ + S+L +R+LDL G + + + F
Sbjct: 334 KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN---F 390
Query: 89 SNMPSLTHLSLCYNEL--TLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYL 146
+ L HL ++ L EF +F L+ L YLD+S + + + +F L L L
Sbjct: 391 MGLEELQHLDFQHSTLKRVTEFSAF-LSLEKLLYLDISYTN-TKIDFDGIFLGLTSLNTL 448
Query: 147 NLTDNQFQGKLSPNV-SKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQI 205
+ N F+ NV + +NLT L L+ + G + +QL+ + +N+
Sbjct: 449 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD 508
Query: 206 PSSLGQLKNLQHLDLRMNALNST 228
S QL +L LD N + ++
Sbjct: 509 SSHYNQLYSLSTLDCSFNRIETS 531
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 76/171 (44%), Gaps = 13/171 (7%)
Query: 64 LSNLRKVRYLDLGGNFLETPDWS--KFSNMPSLTHLSLCYNE-LTLEFPSFILTCRNLTY 120
L L ++ LDL N +E D + N+ L L+L +NE L L+ +F C L
Sbjct: 343 LEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFK-ECPQLEL 401
Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLR---LATNKF 177
LDL+ +L P+ F NL L+ LNLT + + N L+ L VLR L N F
Sbjct: 402 LDLAFTRLHINAPQSPFQNLHFLQVLNLT---YCFLDTSNQHLLAGLPVLRHLNLKGNHF 458
Query: 178 SGPIPGDIGLMSNIQLVELFNNSFTGQI---PSSLGQLKNLQHLDLRMNAL 225
L+ + +E+ S G + + L + H+DL N+L
Sbjct: 459 QDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSL 509
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 78/185 (42%), Gaps = 8/185 (4%)
Query: 44 SELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNE 103
++LQ L + L G P + L ++ L L N + +N PSLTHL + N
Sbjct: 275 TQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNV 333
Query: 104 LTLEFPSFIL-TCRNLTYLDLSLNKLSGLIPERL-FTNLGKLEYLNLTDNQFQGKLSPNV 161
L L NL LDLS N + L NL L+ LNL+ N+ G S
Sbjct: 334 KKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAF 393
Query: 162 SKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSS---LGQLKNLQHL 218
+ L +L LA + P N+ +++ N ++ S+ L L L+HL
Sbjct: 394 KECPQLELLDLAFTRLHINAPQ--SPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHL 451
Query: 219 DLRMN 223
+L+ N
Sbjct: 452 NLKGN 456
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
Query: 119 TYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFS 178
T L+L NKL L P +F L +L L+L+ NQ Q KL+ LT+L L NK
Sbjct: 31 TRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89
Query: 179 GPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIP 230
G ++ ++ + L N +L +LQ + L N + + P
Sbjct: 90 SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 69 KVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKL 128
+ R LDLG N ++T + +F++ P L L L N ++ P NL L L N+L
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92
Query: 129 SGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATN 175
LIP +FT L L L++++N+ L L NL L + N
Sbjct: 93 K-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 84/197 (42%), Gaps = 15/197 (7%)
Query: 43 LSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNF---------LETPDWSKFSNMPS 93
L +L+Y + N++ F L L VRYL+L +F L D F +
Sbjct: 281 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 340
Query: 94 LTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGL--IPERLFTNLGK--LEYLNLT 149
L HL++ N++ + NL YL LS N + L + F +L L LNLT
Sbjct: 341 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNLT 399
Query: 150 DNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPG-DIGLMSNIQLVELFNNSFTGQIPSS 208
N+ S S L +L VL L N+ + G + + NI + L N + +S
Sbjct: 400 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 459
Query: 209 LGQLKNLQHLDLRMNAL 225
+ +LQ L LR AL
Sbjct: 460 FALVPSLQRLMLRRVAL 476
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 117 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRLATN 175
N+T L+L+ N+L L P FT +L L++ N KL P + KL L VL L N
Sbjct: 36 NITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTI-SKLEPELCQKLPMLKVLNLQHN 93
Query: 176 KFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNST 228
+ S +N+ + L +NS + + KNL LDL N L+ST
Sbjct: 94 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 146
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 43 LSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYN 102
LS L L++ +N + +L +++ +DLG N L T S F+N SL L+L N
Sbjct: 545 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 604
Query: 103 ELT-LEFPSFILTCRNLTYLDLSLN 126
+T +E F RNLT LD+ N
Sbjct: 605 LITSVEKKVFGPAFRNLTELDMRFN 629
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 84/197 (42%), Gaps = 15/197 (7%)
Query: 43 LSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNF---------LETPDWSKFSNMPS 93
L +L+Y + N++ F L L VRYL+L +F L D F +
Sbjct: 271 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330
Query: 94 LTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGL--IPERLFTNLGK--LEYLNLT 149
L HL++ N++ + NL YL LS N + L + F +L L LNLT
Sbjct: 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNLT 389
Query: 150 DNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPG-DIGLMSNIQLVELFNNSFTGQIPSS 208
N+ S S L +L VL L N+ + G + + NI + L N + +S
Sbjct: 390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 449
Query: 209 LGQLKNLQHLDLRMNAL 225
+ +LQ L LR AL
Sbjct: 450 FALVPSLQRLMLRRVAL 466
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 117 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRLATN 175
N+T L+L+ N+L L P FT +L L++ N KL P + KL L VL L N
Sbjct: 26 NITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTI-SKLEPELCQKLPMLKVLNLQHN 83
Query: 176 KFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNST 228
+ S +N+ + L +NS + + KNL LDL N L+ST
Sbjct: 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 43 LSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYN 102
LS L L++ +N + +L +++ +DLG N L T S F+N SL L+L N
Sbjct: 535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594
Query: 103 ELT-LEFPSFILTCRNLTYLDLSLN 126
+T +E F RNLT LD+ N
Sbjct: 595 LITSVEKKVFGPAFRNLTELDMRFN 619
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 84/197 (42%), Gaps = 15/197 (7%)
Query: 43 LSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNF---------LETPDWSKFSNMPS 93
L +L+Y + N++ F L L VRYL+L +F L D F +
Sbjct: 276 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 335
Query: 94 LTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGL--IPERLFTNLGK--LEYLNLT 149
L HL++ N++ + NL YL LS N + L + F +L L LNLT
Sbjct: 336 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNLT 394
Query: 150 DNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPG-DIGLMSNIQLVELFNNSFTGQIPSS 208
N+ S S L +L VL L N+ + G + + NI + L N + +S
Sbjct: 395 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 454
Query: 209 LGQLKNLQHLDLRMNAL 225
+ +LQ L LR AL
Sbjct: 455 FALVPSLQRLMLRRVAL 471
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 117 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRLATN 175
N+T L+L+ N+L L P FT +L L++ N KL P + KL L VL L N
Sbjct: 31 NITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTI-SKLEPELCQKLPMLKVLNLQHN 88
Query: 176 KFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNST 228
+ S +N+ + L +NS + + KNL LDL N L+ST
Sbjct: 89 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 141
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 43 LSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYN 102
LS L L++ +N + +L +++ +DLG N L T S F+N SL L+L N
Sbjct: 540 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 599
Query: 103 ELT-LEFPSFILTCRNLTYLDLSLN 126
+T +E F RNLT LD+ N
Sbjct: 600 LITSVEKKVFGPAFRNLTELDMRFN 624
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 60 FPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLT 119
P +LSN + + +DL N + T FSNM L L L YN L P ++L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 120 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTDN 151
L L N +S ++PE F +L L +L + N
Sbjct: 106 LLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Query: 37 PSEMGDLSELQYLSVYNNSLNGAFPFQL-SNLRKVRYLDLGGNFLETPDWSKFSNMPSLT 95
P L L+ L + +N L GA P + +L ++ LDLG N L + F + L
Sbjct: 57 PGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK 115
Query: 96 HLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQF 153
L +C N+LT E P I +LT+L L N+L IP F L L + L N +
Sbjct: 116 ELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFGNPW 171
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 64/131 (48%), Gaps = 10/131 (7%)
Query: 100 CYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSP 159
C ++ P+ I T N L L N+++ L P +F +L L+ L L NQ G L
Sbjct: 26 CRSKRHASVPAGIPT--NAQILYLHDNQITKLEPG-VFDSLINLKELYLGSNQL-GALPV 81
Query: 160 NV-SKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELF--NNSFTGQIPSSLGQLKNLQ 216
V L+ LTVL L TN+ + +P + + L ELF N T ++P + +L +L
Sbjct: 82 GVFDSLTQLTVLDLGTNQLTV-LPSAV-FDRLVHLKELFMCCNKLT-ELPRGIERLTHLT 138
Query: 217 HLDLRMNALNS 227
HL L N L S
Sbjct: 139 HLALDQNQLKS 149
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 6/137 (4%)
Query: 33 EGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMP 92
S+P+ G + Q L +++N + P +L ++ L LG N L F ++
Sbjct: 31 HASVPA--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT 88
Query: 93 SLTHLSLCYNELTLEFPSFIL-TCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDN 151
LT L L N+LT+ PS + +L L + NKL+ L R L L +L L N
Sbjct: 89 QLTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKLTEL--PRGIERLTHLTHLALDQN 145
Query: 152 QFQGKLSPNVSKLSNLT 168
Q + +LS+LT
Sbjct: 146 QLKSIPHGAFDRLSSLT 162
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 54/141 (38%), Gaps = 4/141 (2%)
Query: 307 GLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPXXXXXXXXXXXXXX 366
G+ T Q L+L+ N + P L +L++L L NQL G +P
Sbjct: 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDL 95
Query: 367 XXXXXGTIPPEI-GSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGD 425
+P + + L + N+L ELP I RL +L ++ N G
Sbjct: 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGA 154
Query: 426 FGKFSPSLINVSFSNNSFSGE 446
F + S SL + N + E
Sbjct: 155 FDRLS-SLTHAYLFGNPWDCE 174
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 102 NELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNV 161
N++T P + NL L L N+L G +P +F +L +L L+L NQ S
Sbjct: 50 NQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVF 108
Query: 162 SKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQH 217
+L +L L + NK + +P I ++++ + L N + +L +L H
Sbjct: 109 DRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 25/189 (13%)
Query: 35 SIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSL 94
SIPS G ++ L + NN + L ++ L L N + T + FS++ SL
Sbjct: 45 SIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102
Query: 95 THLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQ 154
HL L YN L+ S+ +LT+L+L N L LF++L KL+ L +
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV------ 156
Query: 155 GKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKN 214
G + T ++ F+G ++ ++ +E+ + P SL ++N
Sbjct: 157 GNMD---------TFTKIQRKDFAG--------LTFLEELEIDASDLQSYEPKSLKSIQN 199
Query: 215 LQHLDLRMN 223
+ HL L M
Sbjct: 200 VSHLILHMK 208
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 25/189 (13%)
Query: 35 SIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSL 94
SIPS G ++ L + NN + L ++ L L N + T + FS++ SL
Sbjct: 19 SIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 76
Query: 95 THLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQ 154
HL L YN L+ S+ +LT+L+L N L LF++L KL+ L +
Sbjct: 77 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV------ 130
Query: 155 GKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKN 214
G + T ++ F+G ++ ++ +E+ + P SL ++N
Sbjct: 131 GNMD---------TFTKIQRKDFAG--------LTFLEELEIDASDLQSYEPKSLKSIQN 173
Query: 215 LQHLDLRMN 223
+ HL L M
Sbjct: 174 VSHLILHMK 182
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 60/140 (42%), Gaps = 10/140 (7%)
Query: 44 SELQYLSVYNNSLNGAFPFQLSNLR--KVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCY 101
+ +Q LS+ NN L S L+ + LDL N L FS +PSL +LSL Y
Sbjct: 222 TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEY 281
Query: 102 NELTLEFPSFILTCRNLTYLDL--SLNKLSGL------IPERLFTNLGKLEYLNLTDNQF 153
N + P NL YL L + K S I + F L LEYLN+ DN
Sbjct: 282 NNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNI 341
Query: 154 QGKLSPNVSKLSNLTVLRLA 173
S + L +L L L+
Sbjct: 342 PSTKSNTFTGLVSLKYLSLS 361
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 102/231 (44%), Gaps = 45/231 (19%)
Query: 37 PSEMGDLSELQYLSVY----NNSLNGA-------FPFQLSNLRKVRYLDLGGNFLETPDW 85
P LS L+YLS+ S++ A F FQ L+ + YL++ N + +
Sbjct: 289 PRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQW--LKYLEYLNMDDNNIPSTKS 346
Query: 86 SKFSNMPSLTHLSL--CYNEL-TLEFPSFI-LTCRNLTYLDLSLNKLSGLIPERLFTNLG 141
+ F+ + SL +LSL + L TL +F+ L L L+L+ N +S I F+ LG
Sbjct: 347 NTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISK-IANGTFSWLG 405
Query: 142 KLEYLNLTDNQFQGKLSPNVSK-LSNLTVLRLATNKF-------SGPIPGDIGLM----- 188
+L L+L N+ + KLS + L N+ + L+ NK+ +P LM
Sbjct: 406 QLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVA 465
Query: 189 --------------SNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNAL 225
N+ +++L NN+ L L+NL+ LD + N L
Sbjct: 466 LKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNL 516
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%)
Query: 165 SNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNA 224
SN+TVL L N+ P + S + +++ NS + P L L+ L+L+ N
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 225 LNSTIPPELGLCTNLSFLAL 244
L+ CTNL+ L L
Sbjct: 85 LSQISDQTFVFCTNLTELDL 104
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 36 IPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLT 95
IP ++ S + L++ +N L P + ++ LD G N + + +P L
Sbjct: 19 IPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLK 76
Query: 96 HLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDN 151
L+L +NEL+ + C NLT LDL N + I F N L L+L+ N
Sbjct: 77 VLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHK-IKSNPFKNQKNLIKLDLSHN 131
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 102/231 (44%), Gaps = 40/231 (17%)
Query: 42 DLSELQYLSVYNNSLNGAFPFQLSNLRKV--RYLDLGGNFLETPDWSKFSNMPSLTHLSL 99
DL L++L + N L+ S+ + +YLDL N + T S F + L HL
Sbjct: 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMS-SNFLGLEQLEHLDF 427
Query: 100 CYNELTL--EFPSFILTCRNLTYLDLS-----------LNKLSGL--------------I 132
++ L EF F L+ RNL YLD+S N LS L +
Sbjct: 428 QHSNLKQMSEFSVF-LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 486
Query: 133 PERLFTNLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRLATNKFSGPIPGDIGLMSNI 191
P+ +FT L L +L+L+ Q + +LSP + LS+L VL ++ N F ++++
Sbjct: 487 PD-IFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 544
Query: 192 QLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFL 242
Q+++ N I +S Q LQH + LN T C + SFL
Sbjct: 545 QVLDYSLN----HIMTSKKQ--ELQHFPSSLAFLNLTQNDFACTCEHQSFL 589
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 25/210 (11%)
Query: 47 QYLSVYNNSLNGAFP-FQLSNLRKVRYL-DLGGNFLETPDWSKFSNMPSLTHLSLCYNEL 104
Q+L + N G FP +L +L+++ + + GGN D +PSL L L N L
Sbjct: 331 QHLELVNCKF-GQFPTLKLKSLKRLTFTSNKGGNAFSEVD------LPSLEFLDLSRNGL 383
Query: 105 TLEFPSFILTCR-------NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKL 157
SF C +L YLDLS N + + F L +LE+L+ + +
Sbjct: 384 -----SFKGCCSQSDFGTISLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQHSNLKQMS 436
Query: 158 SPNVS-KLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQ-IPSSLGQLKNL 215
+V L NL L ++ G +S+++++++ NSF +P +L+NL
Sbjct: 437 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 496
Query: 216 QHLDLRMNALNSTIPPELGLCTNLSFLALA 245
LDL L P ++L L ++
Sbjct: 497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 526
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 75/179 (41%), Gaps = 22/179 (12%)
Query: 70 VRYLDLGGNFLETPDWSKFSNMP-SLTHLSLCYNEL----TLEFPSFILTCRNLTYLDLS 124
+ Y + NF + PD N+P S +L L +N L + F SF L LDLS
Sbjct: 34 ITYQCMELNFYKIPD-----NLPFSTKNLDLSFNPLRHLGSYSFFSF----PELQVLDLS 84
Query: 125 LNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGD 184
++ I + + +L L L LT N Q S LS+L L +
Sbjct: 85 RCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 143
Query: 185 IGLMSNIQLVELFNNSFTG-QIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFL 242
IG + ++ + + +N ++P L NL+HLDL N + S CT+L L
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY------CTDLRVL 196
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 48/117 (41%), Gaps = 1/117 (0%)
Query: 37 PSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTH 96
P L+ LQYL + +N+L +L + +L L GN + + F + SL
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181
Query: 97 LSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQF 153
L L N + P L L L N LS L P L L+YL L DN +
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL-PTEALAPLRALQYLRLNDNPW 237
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 70/176 (39%), Gaps = 2/176 (1%)
Query: 46 LQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNF-LETPDWSKFSNMPSLTHLSLCYNEL 104
L L +++N L + L + LDL N L + D + F + L L L L
Sbjct: 58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117
Query: 105 TLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKL 164
P L YL L N L L P+ F +LG L +L L N+ L
Sbjct: 118 QELGPGLFRGLAALQYLYLQDNALQAL-PDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 176
Query: 165 SNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDL 220
+L L L N+ + P + + + LF N+ + +L L+ LQ+L L
Sbjct: 177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 76/190 (40%), Gaps = 8/190 (4%)
Query: 37 PSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTH 96
P+ L L L + L P L ++YL L N L+ F ++ +LTH
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157
Query: 97 LSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGK 156
L L N ++ +L L L N+++ + P F +LG+L L L N
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH-AFRDLGRLMTLYLFANNLSAL 216
Query: 157 LSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQ 216
+ ++ L L LRL N P D ++ F S + ++P SL Q L
Sbjct: 217 PTEALAPLRALQYLRLNDN----PWVCDCRARPLWAWLQKFRGS-SSEVPCSLPQ--RLA 269
Query: 217 HLDLRMNALN 226
DL+ A N
Sbjct: 270 GRDLKRLAAN 279
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 11/123 (8%)
Query: 36 IPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLT 95
+P ++ + + L++ N ++ + + +L K+R L + N ++ D S F L
Sbjct: 15 VPKDLSQKTTI--LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72
Query: 96 HLSLCYNELTLEFPSFILTCR---NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQ 152
+L L +N+L ++C NL +LDLS N L + F N+ +L++L L+
Sbjct: 73 YLDLSHNKLVK------ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126
Query: 153 FQG 155
+
Sbjct: 127 LEK 129
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 17/162 (10%)
Query: 270 DNFLSGEISANLIGNWTELESLQIQNNSF--MGNIPPEIGLLTKLQYLFLYRNHFS-GPI 326
+N L+ + N G+ TELE+L +Q N + I + LQ L + +N S
Sbjct: 333 NNLLTDTVFEN-CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391
Query: 327 PSEIGKLTSLEKLDLSGNQLSGTI----PPXXXXXXXXXXXXXXXXXXXGTIPPEIGSMA 382
+ SL L++S N L+ TI PP +IP ++ +
Sbjct: 392 KGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKI-------KSIPKQVVKLE 444
Query: 383 SLVAFDVNTNQLHGELPENI-SRLVNLNKFSVFTNNFSGSIP 423
+L +V +NQL +P+ I RL +L K + TN + S P
Sbjct: 445 ALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 485
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 142 KLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSF 201
K LN++ N + ++ LS L +L ++ N+ DI + Q +E + S
Sbjct: 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL---DISVFKFNQELEYLDLSH 78
Query: 202 TGQIPSSLGQLKNLQHLDLRMNALNST-IPPELGLCTNLSFLALA 245
+ S NL+HLDL NA ++ I E G + L FL L+
Sbjct: 79 NKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLS 123
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 48/117 (41%), Gaps = 1/117 (0%)
Query: 37 PSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTH 96
P L+ LQYL + +N+L +L + +L L GN + + F + SL
Sbjct: 121 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 180
Query: 97 LSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQF 153
L L N + P L L L N LS L P L L+YL L DN +
Sbjct: 181 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL-PTEALAPLRALQYLRLNDNPW 236
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 70/176 (39%), Gaps = 2/176 (1%)
Query: 46 LQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNF-LETPDWSKFSNMPSLTHLSLCYNEL 104
L L +++N L + L + LDL N L + D + F + L L L L
Sbjct: 57 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 116
Query: 105 TLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKL 164
P L YL L N L L P+ F +LG L +L L N+ L
Sbjct: 117 QELGPGLFRGLAALQYLYLQDNALQAL-PDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 175
Query: 165 SNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDL 220
+L L L N+ + P + + + LF N+ + +L L+ LQ+L L
Sbjct: 176 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 231
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 72/176 (40%), Gaps = 8/176 (4%)
Query: 37 PSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLET-PDWSKFSNMPSLT 95
P+ L L L + L P L ++YL L N L+ PD F ++ +LT
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD-DTFRDLGNLT 155
Query: 96 HLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQG 155
HL L N ++ +L L L N+++ + P F +LG+L L L N
Sbjct: 156 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH-AFRDLGRLMTLYLFANNLSA 214
Query: 156 KLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQ 211
+ ++ L L LRL N P D ++ F S + ++P SL Q
Sbjct: 215 LPTEALAPLRALQYLRLNDN----PWVCDCRARPLWAWLQKFRGS-SSEVPCSLPQ 265
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 37 PSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTH 96
P L+ LQYL + +N+L +L + +L L GN + + F + SL
Sbjct: 121 PGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDR 180
Query: 97 LSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQF 153
L L N + P L L L N LS ++P + L L+YL L DN +
Sbjct: 181 LLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS-MLPAEVLVPLRSLQYLRLNDNPW 236
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 2/179 (1%)
Query: 46 LQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNF-LETPDWSKFSNMPSLTHLSLCYNEL 104
L L +++N+L G + L + LDL N L D + F + L L L L
Sbjct: 57 LTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGL 116
Query: 105 TLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKL 164
P L YL L N L L P+ F +LG L +L L N+ L
Sbjct: 117 QELGPGLFRGLAALQYLYLQDNNLQAL-PDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGL 175
Query: 165 SNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMN 223
+L L L N + P + + + LF N+ + L L++LQ+L L N
Sbjct: 176 HSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 77/189 (40%), Gaps = 5/189 (2%)
Query: 47 QYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYN-ELT 105
Q + ++ N ++ + R + L L N L D + F+ + L L L N +L
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 106 LEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLS 165
+ P+ +L L L L L P LF L L+YL L DN Q L
Sbjct: 94 VVDPTTFRGLGHLHTLHLDRCGLQELGPG-LFRGLAALQYLYLQDNNLQALPDNTFRDLG 152
Query: 166 NLTVLRLATNKF-SGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNA 224
NLT L L N+ S P GL S +L+ L N P + L L L L N
Sbjct: 153 NLTHLFLHGNRIPSVPEHAFRGLHSLDRLL-LHQNHVARVHPHAFRDLGRLMTLYLFANN 211
Query: 225 LNSTIPPEL 233
L S +P E+
Sbjct: 212 L-SMLPAEV 219
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 102/231 (44%), Gaps = 40/231 (17%)
Query: 42 DLSELQYLSVYNNSLNGAFPFQLSNL--RKVRYLDLGGNFLETPDWSKFSNMPSLTHLSL 99
DL L++L + N L+ S+ ++YLDL N + T S F + L HL
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDF 403
Query: 100 CYNELTL--EFPSFILTCRNLTYLDLS-----------LNKLSGL--------------I 132
++ L EF F L+ RNL YLD+S N LS L +
Sbjct: 404 QHSNLKQMSEFSVF-LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462
Query: 133 PERLFTNLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRLATNKFSGPIPGDIGLMSNI 191
P+ +FT L L +L+L+ Q + +LSP + LS+L VL ++ N F ++++
Sbjct: 463 PD-IFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 520
Query: 192 QLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFL 242
Q+++ N I +S Q LQH + LN T C + SFL
Sbjct: 521 QVLDYSLN----HIMTSKKQ--ELQHFPSSLAFLNLTQNDFACTCEHQSFL 565
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 25/210 (11%)
Query: 47 QYLSVYNNSLNGAFP-FQLSNLRKVRYL-DLGGNFLETPDWSKFSNMPSLTHLSLCYNEL 104
Q+L + N G FP +L +L+++ + + GGN D +PSL L L N L
Sbjct: 307 QHLELVNCKF-GQFPTLKLKSLKRLTFTSNKGGNAFSEVD------LPSLEFLDLSRNGL 359
Query: 105 TLEFPSFILTCR-------NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKL 157
SF C +L YLDLS N + + F L +LE+L+ + +
Sbjct: 360 -----SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQHSNLKQMS 412
Query: 158 SPNVS-KLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQ-IPSSLGQLKNL 215
+V L NL L ++ G +S+++++++ NSF +P +L+NL
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472
Query: 216 QHLDLRMNALNSTIPPELGLCTNLSFLALA 245
LDL L P ++L L ++
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 502
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 75/179 (41%), Gaps = 22/179 (12%)
Query: 70 VRYLDLGGNFLETPDWSKFSNMP-SLTHLSLCYNEL----TLEFPSFILTCRNLTYLDLS 124
+ Y + NF + PD N+P S +L L +N L + F SF L LDLS
Sbjct: 10 ITYQCMELNFYKIPD-----NLPFSTKNLDLSFNPLRHLGSYSFFSF----PELQVLDLS 60
Query: 125 LNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGD 184
++ I + + +L L L LT N Q S LS+L L +
Sbjct: 61 RCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 119
Query: 185 IGLMSNIQLVELFNNSFTG-QIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFL 242
IG + ++ + + +N ++P L NL+HLDL N + S CT+L L
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY------CTDLRVL 172
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 106/239 (44%), Gaps = 41/239 (17%)
Query: 35 SIPSEMGD-LSELQYLSVYNN--SLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNM 91
S+P + D L++L LS+ +N S G ++YLDL N + T S F +
Sbjct: 42 SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGL 100
Query: 92 PSLTHLSLCYNELTL--EFPSFILTCRNLTYLDLS-----------LNKLSGL------- 131
L HL ++ L EF F L+ RNL YLD+S N LS L
Sbjct: 101 EQLEHLDFQHSNLKQMSEFSVF-LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159
Query: 132 -------IPERLFTNLGKLEYLNLTDNQFQGKLSPNV-SKLSNLTVLRLATNKFSGPIPG 183
+P+ +FT L L +L+L+ Q + +LSP + LS+L VL ++ N F
Sbjct: 160 NSFQENFLPD-IFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217
Query: 184 DIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFL 242
++++Q+++ N I +S Q LQH + LN T C + SFL
Sbjct: 218 PYKCLNSLQVLDYSLN----HIMTSKKQ--ELQHFPSSLAFLNLTQNDFACTCEHQSFL 270
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 16/182 (8%)
Query: 73 LDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCR-------NLTYLDLSL 125
L+L N L++ F + LT LSL N L SF C +L YLDLS
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGL-----SFKGCCSQSDFGTTSLKYLDLSF 87
Query: 126 NKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVS-KLSNLTVLRLATNKFSGPIPGD 184
N + + F L +LE+L+ + + +V L NL L ++ G
Sbjct: 88 NGVITMSSN--FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145
Query: 185 IGLMSNIQLVELFNNSFTGQ-IPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLA 243
+S+++++++ NSF +P +L+NL LDL L P ++L L
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205
Query: 244 LA 245
++
Sbjct: 206 MS 207
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 115 CRN-LTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLA 173
CR+ + YLDL LN++ + L + LE+LNL N F + V + L L L+
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVV-FAKLKTLDLS 199
Query: 174 TNK--FSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALN 226
+NK F GP + + + + L NN I +L +NL+H DLR N +
Sbjct: 200 SNKLAFMGP---EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 299 MGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLS 347
+ ++P G+ T Q L+LY N + P +LT L +LDL NQL+
Sbjct: 29 LASVP--TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 75
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 299 MGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLS 347
+ ++P G+ T Q L+LY N + P +LT L +LDL NQL+
Sbjct: 21 LASVP--TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 67
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 121 LDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP 180
L L +N+++ L P +F +L +L YLNL NQ KL+ LT L L N+
Sbjct: 45 LHLYINQITKLEP-GVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSI 103
Query: 181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKN--LQHLDL 220
G + ++ + LFNN + + S + LKN +QH +
Sbjct: 104 PMGVFDNLKSLTHIYLFNNPWDCEC-SDILYLKNWIVQHASI 144
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 89 SNMPSLTH-LSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLN 147
+ +P+ T L L N++T P + LTYL+L++N+L+ L P +F L KL +L
Sbjct: 36 AGIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTAL-PVGVFDKLTKLTHLA 94
Query: 148 LTDNQFQ 154
L NQ +
Sbjct: 95 LHINQLK 101
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 34 GSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPS 93
S+P+ G + Q L +Y N + P +L ++ YL+L N L F +
Sbjct: 32 ASVPA--GIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTK 89
Query: 94 LTHLSLCYNEL 104
LTHL+L N+L
Sbjct: 90 LTHLALHINQL 100
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 37 PSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTH 96
P L++L YL++ N L L K+ +L L N L++ F N+ SLTH
Sbjct: 57 PGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTH 116
Query: 97 LSLCYNELTLEFPSFILTCRNLTYL 121
+ L N E C ++ YL
Sbjct: 117 IYLFNNPWDCE-------CSDILYL 134
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 299 MGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLS 347
+ ++P G+ T Q L+LY N + P +LT L +LDL NQL+
Sbjct: 21 LASVP--TGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT 67
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 115 CRN-LTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLA 173
CR+ + YLDL LN++ + L + LE+LNL N F + V + L L L+
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVV-FAKLKTLDLS 199
Query: 174 TNK--FSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMN 223
+NK F GP + + + + L NN I +L +NL+H DLR N
Sbjct: 200 SNKLAFMGP---EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGN 247
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 121/293 (41%), Gaps = 40/293 (13%)
Query: 67 LRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLN 126
L + YL+L GN + D S SN+ LT+L + N++T S + NL L L+ +
Sbjct: 65 LTNLEYLNLNGN--QITDISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNED 120
Query: 127 KLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIG 186
+S + P NL K LNL N LSP +S + L L + +K P I
Sbjct: 121 NISDISP---LANLTKXYSLNLGANHNLSDLSP-LSNXTGLNYLTVTESKVKDVTP--IA 174
Query: 187 LMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIP---------------- 230
++++ + L N P L L +L + +N + P
Sbjct: 175 NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNK 232
Query: 231 -PELGLCTNLSFLA-LAMXXXXXXXXXXXXXXXXXXXXXXXDNFLSGEISANLIGNWTEL 288
+L NLS L L + N +S +IS ++ N ++L
Sbjct: 233 ITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQIS-DIS--VLNNLSQL 289
Query: 289 ESLQIQNNSFMGNIPPE-IGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLD 340
SL + NN +GN E IG LT L LFL +NH ++I L SL K D
Sbjct: 290 NSLFLNNNQ-LGNEDXEVIGGLTNLTTLFLSQNHI-----TDIRPLASLSKXD 336
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 38 SEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHL 97
S + +LS+L +L + N ++ + +L K++ L++G N + D S +N+ L L
Sbjct: 237 SPLANLSQLTWLEIGTNQISDINAVK--DLTKLKXLNVGSN--QISDISVLNNLSQLNSL 292
Query: 98 SLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIP 133
L N+L E I NLT L LS N ++ + P
Sbjct: 293 FLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 88 FSNMPSLTHLSLCYNELTLEFPSFILT-CRNLTYLDLSLNKLSGLIPERLFTNLGKLEYL 146
++M +L+HL L N E PS + NL ++ NKL + P +F + KL+ L
Sbjct: 143 LTDMRNLSHLELRAN--IEEMPSHLFDDLENLESIEFGSNKLRQM-PRGIFGKMPKLKQL 199
Query: 147 NLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIP 182
NL NQ + +L++L + L TN + P
Sbjct: 200 NLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 235
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 87/195 (44%), Gaps = 35/195 (17%)
Query: 43 LSELQYLSVYNNSL----NGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLS 98
L+ L L +++N L +GAF + L K+R L L N +E+ F+ +PSL L
Sbjct: 122 LASLNTLELFDNWLTVIPSGAFEY----LSKLRELWLRNNPIESIPSYAFNRVPSLMRLD 177
Query: 99 LCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLS 158
L EL + L Y I E F L L+YLNL K
Sbjct: 178 L--GEL-----------KKLEY-----------ISEGAFEGLFNLKYLNL--GMCNIKDM 211
Query: 159 PNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHL 218
PN++ L L L ++ N F PG +S+++ + + N+ + ++ L +L L
Sbjct: 212 PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271
Query: 219 DLRMNALNSTIPPEL 233
+L N L S++P +L
Sbjct: 272 NLAHNNL-SSLPHDL 285
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 39/93 (41%)
Query: 135 RLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLV 194
R+F L L+ LNL N+ L NL VL L+ N + + + +
Sbjct: 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343
Query: 195 ELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNS 227
+L N + L+ LQ LDLR NAL +
Sbjct: 344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 1/109 (0%)
Query: 70 VRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLS 129
VR+LDL F+ + + F + L L+L YN++ NL L+LS N L
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327
Query: 130 GLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFS 178
L F L K+ Y++L N L L L L N +
Sbjct: 328 ELYSSN-FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 50 SVYNNSLNGAFPFQLSN-----LRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNEL 104
SV + L+ F F L++ L+ ++ L+L N + F + +L L+L YN L
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326
Query: 105 TLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDN 151
+ S + Y+DL N ++ +I ++ F L KL+ L+L DN
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDN 372
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 24/159 (15%)
Query: 82 TPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLS-GLIPERLFTNL 140
T D F N+P+L L L +++ P +L L L LS ++ + F NL
Sbjct: 63 TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122
Query: 141 GKLEYLNLTDNQFQG-KLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNN 199
L L+L+ NQ + L P+ KL++L + ++N+ I L+ +L L
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ--------IFLVCEHELEPL--- 171
Query: 200 SFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTN 238
Q K L L N+L S + + G C N
Sbjct: 172 -----------QGKTLSFFSLAANSLYSRVSVDWGKCMN 199
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 505 LDFIRLSGNHFIGEISPDWGECRN-LSNLQLDRNKISG 541
L F L+ N +S DWG+C N N+ L+ +SG
Sbjct: 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG 213
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 60 FPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLT 119
+ F++ N+ + +D+GG E W F S+T S+ + + EF ++ R
Sbjct: 194 YDFEIKNV-PFKMVDVGGQRSERKRW--FECFDSVT--SILFLVSSSEFDQVLMEDRQTN 248
Query: 120 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTD 150
L SLN ++ R+F+N+ + +LN TD
Sbjct: 249 RLTESLNIFETIVNNRVFSNVSIILFLNKTD 279
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 79/187 (42%), Gaps = 34/187 (18%)
Query: 43 LSELQYLSVYNNSL----NGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLS 98
L+ L L +++N L NGAF + L K++ L L N +E+ F+ +PSL L
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVY----LSKLKELWLRNNPIESIPSYAFNRIPSLRRLD 166
Query: 99 LCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLS 158
L EL + L+Y I E F L L YLNL +
Sbjct: 167 L--GEL-----------KRLSY-----------ISEGAFEGLSNLRYLNLAMCNLRE--I 200
Query: 159 PNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHL 218
PN++ L L L L+ N S PG + ++Q + + + ++ L++L +
Sbjct: 201 PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260
Query: 219 DLRMNAL 225
+L N L
Sbjct: 261 NLAHNNL 267
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 112 ILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLR 171
+ +C N + + K +P+ + TN LNL +NQ Q + L +L +L+
Sbjct: 38 VCSCSNQFSKVICVRKNLREVPDGISTNT---RLLNLHENQIQIIKVNSFKHLRHLEILQ 94
Query: 172 LATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNS 227
L+ N G ++N+ +ELF+N T + L L+ L LR N + S
Sbjct: 95 LSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES 150
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 37 PSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTH 96
P L LQ L +N L L ++ LDL N L++ F N+ SLTH
Sbjct: 50 PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTH 109
Query: 97 LSLCYNELTLEFPSFILTCRNLTYL 121
+ L N E CR++ YL
Sbjct: 110 IYLYNNPWDCE-------CRDIMYL 127
Score = 29.3 bits (64), Expect = 5.5, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 286 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQ 345
T+ + L + NN P L LQ L+ N + KLT L +LDL+ N
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 346 LSGTIP 351
L +IP
Sbjct: 93 LK-SIP 97
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 282 IGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDL 341
I + +LE L ++ + + N PP G L+ L L +P +I +LT LEKLDL
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
Query: 342 SG 343
G
Sbjct: 285 RG 286
>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 338
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 60 FPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLT 119
+ F++ N+ + +D+GG E W F S+T S+ + + EF ++ R
Sbjct: 170 YDFEIKNV-PFKMVDVGGQRSERKRW--FECFDSVT--SILFLVSSSEFDQVLMEDRQTN 224
Query: 120 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTD 150
L SLN ++ R+F+N+ + +LN TD
Sbjct: 225 RLTESLNIFETIVNNRVFSNVSIILFLNKTD 255
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 75/179 (41%), Gaps = 22/179 (12%)
Query: 70 VRYLDLGGNFLETPDWSKFSNMP-SLTHLSLCYNEL----TLEFPSFILTCRNLTYLDLS 124
+ Y + NF + PD N+P S +L L +N L + F SF L LDLS
Sbjct: 11 ITYQCMELNFYKIPD-----NLPFSTKNLDLSWNPLRHLGSYSFFSF----PELQVLDLS 61
Query: 125 LNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGD 184
++ I + + +L L L LT N Q S LS+L L +
Sbjct: 62 RCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 120
Query: 185 IGLMSNIQLVELFNNSFTG-QIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFL 242
IG + ++ + + +N ++P L NL+HLDL N + S CT+L L
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI------YCTDLRVL 173
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 7/191 (3%)
Query: 45 ELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHL-SLCYNE 103
ELQ L + + +L + L L GN +++ FS + SL L ++ N
Sbjct: 54 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 113
Query: 104 LTLE-FPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVS 162
+LE FP I + L L+++ N + F+NL LE+L+L+ N+ Q ++
Sbjct: 114 ASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 171
Query: 163 KLSNLTVLRLATNKFSGPIPG-DIGLMSNIQLVEL-FNNSFTGQIPSSL-GQLKNLQHLD 219
L + +L L+ + P+ G I+L EL + + +P + +L +LQ +
Sbjct: 172 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIW 231
Query: 220 LRMNALNSTIP 230
L N + + P
Sbjct: 232 LHTNPWDCSCP 242
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 75/179 (41%), Gaps = 22/179 (12%)
Query: 70 VRYLDLGGNFLETPDWSKFSNMP-SLTHLSLCYNEL----TLEFPSFILTCRNLTYLDLS 124
+ Y + NF + PD N+P S +L L +N L + F SF L LDLS
Sbjct: 12 ITYQCMELNFYKIPD-----NLPFSTKNLDLSWNPLRHLGSYSFFSF----PELQVLDLS 62
Query: 125 LNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGD 184
++ I + + +L L L LT N Q S LS+L L +
Sbjct: 63 RCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 121
Query: 185 IGLMSNIQLVELFNNSFTG-QIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFL 242
IG + ++ + + +N ++P L NL+HLDL N + S CT+L L
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI------YCTDLRVL 174
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 7/191 (3%)
Query: 45 ELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHL-SLCYNE 103
ELQ L + + +L + L L GN +++ FS + SL L ++ N
Sbjct: 55 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 114
Query: 104 LTLE-FPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVS 162
+LE FP I + L L+++ N + F+NL LE+L+L+ N+ Q ++
Sbjct: 115 ASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 172
Query: 163 KLSNLTVLRLATNKFSGPIPG-DIGLMSNIQLVEL-FNNSFTGQIPSSL-GQLKNLQHLD 219
L + +L L+ + P+ G I+L EL + + +P + +L +LQ +
Sbjct: 173 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIW 232
Query: 220 LRMNALNSTIP 230
L N + + P
Sbjct: 233 LHTNPWDCSCP 243
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 75/179 (41%), Gaps = 22/179 (12%)
Query: 70 VRYLDLGGNFLETPDWSKFSNMP-SLTHLSLCYNEL----TLEFPSFILTCRNLTYLDLS 124
+ Y + NF + PD N+P S +L L +N L + F SF L LDLS
Sbjct: 10 ITYQCMELNFYKIPD-----NLPFSTKNLDLSFNPLRHLGSYSFFSF----PELQVLDLS 60
Query: 125 LNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGD 184
++ I + + +L L L LT N Q S LS+L L +
Sbjct: 61 RCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 119
Query: 185 IGLMSNIQLVELFNNSFTG-QIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFL 242
IG + ++ + + +N ++P L NL+HLDL N + S CT+L L
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI------YCTDLRVL 172
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 7/191 (3%)
Query: 45 ELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHL-SLCYNE 103
ELQ L + + +L + L L GN +++ FS + SL L ++ N
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112
Query: 104 LTLE-FPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVS 162
+LE FP I + L L+++ N + F+NL LE+L+L+ N+ Q ++
Sbjct: 113 ASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170
Query: 163 KLSNLTVLRLATNKFSGPIPG-DIGLMSNIQLVEL-FNNSFTGQIPSSL-GQLKNLQHLD 219
L + +L L+ + P+ G I+L EL + + +P + +L +LQ +
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIW 230
Query: 220 LRMNALNSTIP 230
L N + + P
Sbjct: 231 LHTNPWDCSCP 241
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 142 KLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSF 201
+ + L+L+ N P++S LS L VLRL+ N+ D + Q +E + S
Sbjct: 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS---LDFHVFLFNQDLEYLDVSH 109
Query: 202 TGQIPSSLGQLKNLQHLDLRMNALNST-IPPELGLCTNLSFLALA 245
S + +L+HLDL N + + E G T L+FL L+
Sbjct: 110 NRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS 154
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 11/118 (9%)
Query: 117 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGK----LSPNVSKLSNLTVLRL 172
+L LD+SLN L+ +R + LNL+ N G L P V VL L
Sbjct: 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVK------VLDL 457
Query: 173 ATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIP 230
N+ IP D+ + +Q + + +N +L +LQ++ L N + T P
Sbjct: 458 HNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 79/182 (43%), Gaps = 28/182 (15%)
Query: 70 VRYLDLGGNFLETPDWSKFSNMP-SLTHLSLCYNEL----TLEFPSFILTCRNLTYLDLS 124
+ Y + NF + PD N+P S +L L +N L + F SF L LDLS
Sbjct: 12 ITYQCMELNFYKIPD-----NLPFSTKNLDLSFNPLRHLGSYSFFSF----PELQVLDLS 62
Query: 125 LNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNL-TVLRLATNKFS---GP 180
++ I + + +L L L LT N Q S LS+L ++ L TN S P
Sbjct: 63 RCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFP 121
Query: 181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLS 240
I G + + + + SF ++P L NL+HLDL N + S CT+L
Sbjct: 122 I-GHLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLDLSSNKIQSIY------CTDLR 172
Query: 241 FL 242
L
Sbjct: 173 VL 174
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 86/191 (45%), Gaps = 7/191 (3%)
Query: 45 ELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHL-SLCYNE 103
ELQ L + + +L + L L GN +++ FS + SL L +L N
Sbjct: 55 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNL 114
Query: 104 LTLE-FPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVS 162
+LE FP I + L L+++ N + F+NL LE+L+L+ N+ Q ++
Sbjct: 115 ASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 172
Query: 163 KLSNLTVLRLATNKFSGPIPG-DIGLMSNIQLVEL-FNNSFTGQIPSSL-GQLKNLQHLD 219
L + +L L+ + P+ G I+L EL + + +P + +L +LQ +
Sbjct: 173 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIW 232
Query: 220 LRMNALNSTIP 230
L N + + P
Sbjct: 233 LHTNPWDCSCP 243
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 72/171 (42%), Gaps = 22/171 (12%)
Query: 78 NFLETPDWSKFSNMP-SLTHLSLCYNEL----TLEFPSFILTCRNLTYLDLSLNKLSGLI 132
NF + PD N+P S +L L +N L + F SF L LDLS ++ I
Sbjct: 19 NFYKIPD-----NLPFSTKNLDLSFNPLRHLGSYSFFSF----PELQVLDLSRCEIQT-I 68
Query: 133 PERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQ 192
+ + +L L L LT N Q S LS+L L + IG + ++
Sbjct: 69 EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 128
Query: 193 LVELFNNSFTG-QIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFL 242
+ + +N ++P L NL+HLDL N + S CT+L L
Sbjct: 129 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI------YCTDLRVL 173
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 7/191 (3%)
Query: 45 ELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHL-SLCYNE 103
ELQ L + + +L + L L GN +++ FS + SL L ++ N
Sbjct: 54 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 113
Query: 104 LTLE-FPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVS 162
+LE FP I + L L+++ N + F+NL LE+L+L+ N+ Q ++
Sbjct: 114 ASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 171
Query: 163 KLSNLTVLRLATNKFSGPIPG-DIGLMSNIQLVEL-FNNSFTGQIPSSL-GQLKNLQHLD 219
L + +L L+ + P+ G I+L EL + + +P + +L +LQ +
Sbjct: 172 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIW 231
Query: 220 LRMNALNSTIP 230
L N + + P
Sbjct: 232 LHTNPWDCSCP 242
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 164 LSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMN 223
LSNL + ++ N F + + L NS T ++P+ + L NL+ LDL N
Sbjct: 231 LSNLQIFNISANIFKYDF---------LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHN 280
Query: 224 ALNSTIPPELGLCTNLSFL 242
L S +P ELG C L +
Sbjct: 281 RLTS-LPAELGSCFQLKYF 298
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 35 SIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLE 81
S+P+E+G +L+Y ++N + P++ NL +++L + GN LE
Sbjct: 284 SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLE 329
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 60 FPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLT 119
+ F++ N+ + +D+GG E W F S+T S+ + + EF ++ R
Sbjct: 170 YDFEIKNV-PFKMVDVGGLRSERKRW--FECFDSVT--SILFLVSSSEFDQVLMEDRQTN 224
Query: 120 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTD 150
L SLN ++ R+F+N+ + +LN TD
Sbjct: 225 RLTESLNIFETIVNNRVFSNVSIILFLNKTD 255
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 281 LIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLD 340
++ T+L++L +++N +P + LTKLQ L+L +NH S++ L L+ LD
Sbjct: 146 VLSRLTKLDTLSLEDNQISDIVP--LACLTKLQNLYLSKNHI-----SDLRALCGLKNLD 198
Query: 341 L 341
+
Sbjct: 199 V 199
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 281 LIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLD 340
++ T+L++L +++N +P + LTKLQ L+L +NH S++ L L+ LD
Sbjct: 149 VLSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSKNHI-----SDLRALRGLKNLD 201
Query: 341 L 341
+
Sbjct: 202 V 202
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 7/61 (11%)
Query: 281 LIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLD 340
++ T+L++L +++N + +I P GL TKLQ L+L +NH S++ L L+ LD
Sbjct: 169 VLSRLTKLDTLSLEDNQ-ISDIVPLAGL-TKLQNLYLSKNHI-----SDLRALAGLKNLD 221
Query: 341 L 341
+
Sbjct: 222 V 222
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 7/61 (11%)
Query: 281 LIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLD 340
++ T+L++L +++N + +I P GL TKLQ L+L +NH S++ L L+ LD
Sbjct: 169 VLSRLTKLDTLSLEDNQ-ISDIVPLAGL-TKLQNLYLSKNHI-----SDLRALAGLKNLD 221
Query: 341 L 341
+
Sbjct: 222 V 222
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 7/61 (11%)
Query: 281 LIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLD 340
++ T+L++L +++N + +I P GL TKLQ L+L +NH S++ L L+ LD
Sbjct: 169 VLSRLTKLDTLSLEDNQ-ISDIVPLAGL-TKLQNLYLSKNHI-----SDLRALAGLKNLD 221
Query: 341 L 341
+
Sbjct: 222 V 222
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 7/61 (11%)
Query: 281 LIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLD 340
++ T+L++L +++N + +I P GL TKLQ L+L +NH S++ L L+ LD
Sbjct: 146 VLSRLTKLDTLSLEDNQ-ISDIVPLAGL-TKLQNLYLSKNHI-----SDLRALAGLKNLD 198
Query: 341 L 341
+
Sbjct: 199 V 199
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 281 LIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLD 340
++ T+L++L +++N +P + LTKLQ L+L +NH S++ L L+ LD
Sbjct: 171 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI-----SDLRALAGLKNLD 223
Query: 341 L 341
+
Sbjct: 224 V 224
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 281 LIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLD 340
++ T+L++L +++N +P + LTKLQ L+L +NH S++ L L+ LD
Sbjct: 151 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI-----SDLRALAGLKNLD 203
Query: 341 L 341
+
Sbjct: 204 V 204
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 281 LIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLD 340
++ T+L++L +++N +P + LTKLQ L+L +NH S++ L L+ LD
Sbjct: 149 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI-----SDLRALAGLKNLD 201
Query: 341 L 341
+
Sbjct: 202 V 202
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 7/56 (12%)
Query: 286 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDL 341
T+L++L +++N +P + LTKLQ L+L +NH S++ L L+ LD+
Sbjct: 156 TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI-----SDLRALAGLKNLDV 204
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 7/56 (12%)
Query: 286 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDL 341
T+L++L +++N + +I P GL TKLQ L+L +NH S++ L L+ LD+
Sbjct: 153 TKLDTLSLEDNQ-ISDIVPLAGL-TKLQNLYLSKNHI-----SDLRALAGLKNLDV 201
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 28/111 (25%)
Query: 70 VRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLS 129
+RYLDL N L T D FS++ +L L L N +
Sbjct: 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV------------------------ 125
Query: 130 GLIPERLFTNLGKLEYLNLTDNQ---FQGKLSPNVSKLSNLTVLRLATNKF 177
++ F ++ +L+ L L+ NQ F +L + +KL L +L L++NK
Sbjct: 126 -VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 1/129 (0%)
Query: 49 LSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEF 108
+ + N++ P S +K+R +DL N + F + SL L L N++T
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96
Query: 109 PSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLT 168
S +L L L+ NK++ L + F +L L L+L DN+ Q S L +
Sbjct: 97 KSLFEGLFSLQLLLLNANKINXLRVD-AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155
Query: 169 VLRLATNKF 177
+ LA N F
Sbjct: 156 TMHLAQNPF 164
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 1/129 (0%)
Query: 49 LSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEF 108
+ + N++ P S +K+R +DL N + F + SL L L N++T
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96
Query: 109 PSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLT 168
S +L L L+ NK++ L + F +L L L+L DN+ Q S L +
Sbjct: 97 KSLFEGLFSLQLLLLNANKINCLRVD-AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155
Query: 169 VLRLATNKF 177
+ LA N F
Sbjct: 156 TMHLAQNPF 164
>pdb|2RFT|A Chain A, Crystal Structure Of Influenza B Virus Hemagglutinin In
Complex With Lsta Receptor Analog
pdb|2RFU|A Chain A, Crystal Structure Of Influenza B Virus Hemagglutinin In
Complex With Lstc Receptor Analog
Length = 344
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 128 LSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIP 182
++G+IP L T K + NL Q +GKL PN ++L V L K G IP
Sbjct: 26 VTGVIP--LTTTPTKSHFANLKGTQTRGKLCPNCLNCTDLDVA-LGRPKCMGTIP 77
>pdb|3BT6|A Chain A, Crystal Structure Of Influenza B Virus Hemagglutinin
Length = 342
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 128 LSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIP 182
++G+IP L T K + NL Q +GKL PN ++L V L K G IP
Sbjct: 26 VTGVIP--LTTTPTKSHFANLKGTQTRGKLCPNCLNCTDLDVA-LGRPKCMGTIP 77
>pdb|1SRQ|A Chain A, Crystal Structure Of The Rap1gap Catalytic Domain
pdb|1SRQ|B Chain B, Crystal Structure Of The Rap1gap Catalytic Domain
pdb|1SRQ|C Chain C, Crystal Structure Of The Rap1gap Catalytic Domain
pdb|1SRQ|D Chain D, Crystal Structure Of The Rap1gap Catalytic Domain
Length = 341
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 376 PEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFS-GSIPGDFGKFS 430
P + MA LV DVN ++ + L SRL+ V +NNF G I G+ S
Sbjct: 77 PNVVQMAKLVCEDVNVDRFYPVLYPKASRLIVTFDEHVISNNFKFGVIYQKLGQTS 132
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 20/130 (15%)
Query: 117 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLN---------LTDNQFQGKLSPNVSKLSNL 167
++ Y+DLSLN ++ L E F+ L L++L + +N F+G S + KL
Sbjct: 31 HVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 168 TVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSS--LGQLKNLQHLDLRMNAL 225
L+L T F+G ++N++++ L + G + S L +L+ L LR N +
Sbjct: 90 QFLQLETGAFNG--------LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI 141
Query: 226 NSTIPPELGL 235
P L
Sbjct: 142 KKIQPASFFL 151
>pdb|3BRW|A Chain A, Structure Of The Rap-Rapgap Complex
pdb|3BRW|B Chain B, Structure Of The Rap-Rapgap Complex
pdb|3BRW|C Chain C, Structure Of The Rap-Rapgap Complex
Length = 341
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 376 PEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFS 419
P + MA LV DVN ++ + L SRL+ V +NNF
Sbjct: 77 PNVVQMAKLVCEDVNVDRFYPVLYPKASRLIVTFDEHVISNNFK 120
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 39/80 (48%), Gaps = 12/80 (15%)
Query: 117 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNK 176
NLTYL NKL+ L T L KL YLN N+ KL +VS+ LT L A N
Sbjct: 86 NLTYLACDSNKLTNLD----VTPLTKLTYLNCDTNKL-TKL--DVSQNPLLTYLNCARNT 138
Query: 177 FSGPIPGDIGLMSNIQLVEL 196
+ +I + N QL EL
Sbjct: 139 LT-----EIDVSHNTQLTEL 153
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 74/184 (40%), Gaps = 44/184 (23%)
Query: 66 NLRKVRYLDLGGNFLETPDWSKFSN----MPSLTHLSLCYNEL--TLEFPSFILTCRNLT 119
+L+ + +LDL N + ++ K S PSL L L N L + +LT +NLT
Sbjct: 358 HLKSLEFLDLSENLM-VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT 416
Query: 120 YLDLSLNKL-----SGLIPERL-FTNLGK-------------LEYLNLTDNQFQG----- 155
LD+S N S PE++ F NL LE L++++N
Sbjct: 417 SLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFL 476
Query: 156 -------------KLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFT 202
K P+ S L V+++A+N+ G ++++Q + L N +
Sbjct: 477 PRLQELYISRNKLKTLPDASLFPVLLVMKIASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 536
Query: 203 GQIP 206
P
Sbjct: 537 CSCP 540
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 13/152 (8%)
Query: 73 LDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLI 132
LDL N + F N+ +L L L N+++ P L L LS N+L L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL- 115
Query: 133 PERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATN--KFSGPIPGDIGLMSN 190
PE++ L+ L + +N+ + L+ + V+ L TN K SG G M
Sbjct: 116 PEKMPKT---LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 191 IQLVELFNNSFT---GQIPSSLGQLKNLQHLD 219
+ + + + + T +P SL +L HLD
Sbjct: 173 LSYIRIADTNITTIPQGLPPSLTEL----HLD 200
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 13/152 (8%)
Query: 73 LDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLI 132
LDL N + F N+ +L L L N+++ P L L LS N+L L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL- 115
Query: 133 PERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATN--KFSGPIPGDIGLMSN 190
PE++ L+ L + +N+ + L+ + V+ L TN K SG G M
Sbjct: 116 PEKMPKT---LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 191 IQLVELFNNSFT---GQIPSSLGQLKNLQHLD 219
+ + + + + T +P SL +L HLD
Sbjct: 173 LSYIRIADTNITTIPQGLPPSLTEL----HLD 200
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,453,500
Number of Sequences: 62578
Number of extensions: 623955
Number of successful extensions: 2126
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 1092
Number of HSP's gapped (non-prelim): 590
length of query: 569
length of database: 14,973,337
effective HSP length: 104
effective length of query: 465
effective length of database: 8,465,225
effective search space: 3936329625
effective search space used: 3936329625
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)