Query 047977
Match_columns 569
No_of_seqs 282 out of 3629
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 05:05:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047977.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047977hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.5E-56 5.5E-61 491.6 39.0 536 20-562 69-605 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.8E-56 3.8E-61 492.8 37.2 520 43-568 68-588 (968)
3 KOG4194 Membrane glycoprotein 100.0 9.7E-38 2.1E-42 292.3 5.1 363 1-367 83-448 (873)
4 KOG4194 Membrane glycoprotein 100.0 3.1E-37 6.7E-42 289.0 6.4 388 144-559 55-447 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 6.9E-39 1.5E-43 287.0 -13.8 478 68-565 45-542 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 1.3E-38 2.9E-43 285.1 -16.6 479 43-540 44-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 4.7E-35 1E-39 288.8 -5.5 462 70-562 23-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 5.1E-34 1.1E-38 281.5 -5.3 505 1-537 3-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 2.3E-32 4.9E-37 258.6 -5.0 360 1-395 12-375 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 3.1E-31 6.6E-36 251.0 -6.2 364 164-538 6-373 (1255)
11 PLN03210 Resistant to P. syrin 99.9 1.7E-22 3.7E-27 223.2 27.1 288 261-562 611-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 2.6E-22 5.6E-27 221.8 27.0 339 183-538 552-904 (1153)
13 KOG4237 Extracellular matrix p 99.9 3.4E-25 7.3E-30 199.1 -3.8 421 59-513 60-498 (498)
14 KOG4237 Extracellular matrix p 99.9 7.1E-25 1.5E-29 197.0 -6.5 411 116-561 67-498 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 3.9E-19 8.6E-24 182.3 16.5 238 287-566 223-460 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 1.6E-18 3.6E-23 177.8 15.3 262 240-547 204-465 (788)
17 cd00116 LRR_RI Leucine-rich re 99.8 6.7E-20 1.4E-24 176.8 0.5 209 354-563 77-319 (319)
18 PRK15370 E3 ubiquitin-protein 99.8 5.5E-18 1.2E-22 175.2 12.5 246 262-540 179-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 3.4E-19 7.4E-24 171.9 0.7 208 331-539 78-319 (319)
20 PRK15370 E3 ubiquitin-protein 99.7 1.4E-17 3E-22 172.2 10.4 246 238-516 179-428 (754)
21 KOG0617 Ras suppressor protein 99.6 1.7E-17 3.6E-22 132.5 -5.1 153 405-563 32-185 (264)
22 KOG0617 Ras suppressor protein 99.6 7.4E-17 1.6E-21 128.8 -4.1 154 1-161 38-192 (264)
23 KOG1259 Nischarin, modulator o 99.3 6.5E-13 1.4E-17 116.3 1.8 132 432-569 285-417 (490)
24 KOG3207 Beta-tubulin folding c 99.3 5.5E-13 1.2E-17 122.8 0.5 88 332-419 119-210 (505)
25 KOG1909 Ran GTPase-activating 99.2 4.7E-13 1E-17 119.9 -1.9 185 379-563 89-310 (382)
26 KOG0532 Leucine-rich repeat (L 99.2 2.1E-13 4.7E-18 129.5 -4.3 171 384-564 77-247 (722)
27 KOG1909 Ran GTPase-activating 99.2 1.6E-12 3.4E-17 116.6 -2.4 91 15-105 25-133 (382)
28 PF14580 LRR_9: Leucine-rich r 99.1 3.8E-11 8.2E-16 101.2 3.9 122 432-557 20-146 (175)
29 COG4886 Leucine-rich repeat (L 99.1 1.5E-10 3.2E-15 114.9 7.3 199 337-545 96-295 (394)
30 KOG4658 Apoptotic ATPase [Sign 99.1 8.4E-11 1.8E-15 124.4 4.6 129 20-152 523-653 (889)
31 KOG1259 Nischarin, modulator o 99.1 3.6E-11 7.7E-16 105.6 1.4 132 403-541 281-413 (490)
32 PF14580 LRR_9: Leucine-rich r 99.1 1.4E-10 3E-15 97.8 4.7 129 16-148 15-147 (175)
33 KOG3207 Beta-tubulin folding c 99.0 2.5E-11 5.4E-16 112.1 -0.5 210 306-516 117-339 (505)
34 KOG0532 Leucine-rich repeat (L 99.0 7E-12 1.5E-16 119.4 -4.9 193 335-538 76-271 (722)
35 PLN03150 hypothetical protein; 99.0 4.9E-10 1.1E-14 116.2 7.8 108 433-540 420-528 (623)
36 COG4886 Leucine-rich repeat (L 99.0 6.7E-10 1.4E-14 110.2 7.4 200 313-522 96-296 (394)
37 PF13855 LRR_8: Leucine rich r 99.0 5.2E-10 1.1E-14 77.3 3.6 61 503-563 1-61 (61)
38 KOG4658 Apoptotic ATPase [Sign 99.0 3.8E-10 8.2E-15 119.5 3.7 107 20-127 545-653 (889)
39 PLN03150 hypothetical protein; 98.9 3.1E-09 6.8E-14 110.2 8.7 108 457-564 420-528 (623)
40 PF13855 LRR_8: Leucine rich r 98.9 1E-09 2.2E-14 75.9 3.5 59 480-538 2-60 (61)
41 KOG0531 Protein phosphatase 1, 98.8 7.9E-10 1.7E-14 109.7 -0.4 245 285-568 71-322 (414)
42 KOG0531 Protein phosphatase 1, 98.6 2.4E-09 5.3E-14 106.2 -2.4 197 354-564 91-290 (414)
43 KOG2120 SCF ubiquitin ligase, 98.5 1.5E-09 3.3E-14 95.4 -7.9 57 46-102 187-244 (419)
44 KOG1859 Leucine-rich repeat pr 98.5 2.2E-09 4.7E-14 105.7 -8.1 125 433-563 166-291 (1096)
45 KOG2120 SCF ubiquitin ligase, 98.4 2E-09 4.3E-14 94.7 -9.6 181 141-321 185-374 (419)
46 KOG2982 Uncharacterized conser 98.4 1.1E-07 2.5E-12 83.9 1.1 183 140-323 70-262 (418)
47 KOG2982 Uncharacterized conser 98.3 6.2E-08 1.3E-12 85.5 -1.6 228 335-564 46-290 (418)
48 KOG1859 Leucine-rich repeat pr 98.3 4.4E-08 9.6E-13 96.8 -2.9 175 381-566 86-269 (1096)
49 KOG4341 F-box protein containi 98.3 1.2E-08 2.7E-13 94.2 -7.5 84 93-176 139-227 (483)
50 COG5238 RNA1 Ran GTPase-activa 98.3 1.1E-07 2.5E-12 82.8 -1.4 209 18-226 28-285 (388)
51 PF13306 LRR_5: Leucine rich r 98.2 3.3E-06 7.1E-11 69.0 6.9 127 11-144 3-129 (129)
52 KOG4341 F-box protein containi 98.1 2.8E-08 6.1E-13 91.8 -8.0 134 405-538 293-437 (483)
53 PRK15386 type III secretion pr 98.1 1.6E-05 3.4E-10 76.0 9.7 54 309-368 51-104 (426)
54 PRK15386 type III secretion pr 98.1 1.6E-05 3.5E-10 75.9 8.8 136 354-513 48-187 (426)
55 COG5238 RNA1 Ran GTPase-activa 98.0 2E-06 4.2E-11 75.3 1.8 235 330-564 26-316 (388)
56 PF13306 LRR_5: Leucine rich r 98.0 2E-05 4.4E-10 64.3 6.3 125 36-167 4-128 (129)
57 KOG1644 U2-associated snRNP A' 97.9 2.2E-05 4.8E-10 65.9 5.3 105 432-538 43-151 (233)
58 KOG4579 Leucine-rich repeat (L 97.9 5.1E-07 1.1E-11 70.3 -4.0 130 432-566 28-161 (177)
59 PF12799 LRR_4: Leucine Rich r 97.9 1.9E-05 4.2E-10 49.6 3.6 36 480-516 2-37 (44)
60 PF12799 LRR_4: Leucine Rich r 97.8 2E-05 4.4E-10 49.5 3.1 37 456-493 2-38 (44)
61 KOG3665 ZYG-1-like serine/thre 97.8 7.3E-06 1.6E-10 85.2 1.4 151 405-557 121-281 (699)
62 KOG3665 ZYG-1-like serine/thre 97.7 2.5E-05 5.4E-10 81.3 3.2 154 382-537 122-285 (699)
63 KOG1644 U2-associated snRNP A' 97.6 8.2E-05 1.8E-09 62.5 5.2 124 434-560 22-149 (233)
64 KOG4579 Leucine-rich repeat (L 97.6 3.1E-06 6.8E-11 66.0 -3.0 84 405-491 52-135 (177)
65 KOG1947 Leucine rich repeat pr 97.5 8.9E-06 1.9E-10 83.5 -3.4 236 66-322 186-439 (482)
66 KOG2123 Uncharacterized conser 97.4 1.3E-05 2.9E-10 70.4 -3.0 98 432-533 20-123 (388)
67 KOG1947 Leucine rich repeat pr 97.3 2.9E-05 6.4E-10 79.6 -1.4 187 308-505 186-389 (482)
68 KOG2739 Leucine-rich acidic nu 97.1 0.0003 6.5E-09 61.9 2.1 108 404-514 41-154 (260)
69 KOG2123 Uncharacterized conser 96.9 3.7E-05 7.9E-10 67.8 -4.9 100 454-557 18-123 (388)
70 KOG2739 Leucine-rich acidic nu 96.9 0.00047 1E-08 60.7 1.6 124 432-557 19-149 (260)
71 KOG3864 Uncharacterized conser 95.1 0.0023 4.9E-08 54.2 -2.4 79 481-559 103-184 (221)
72 PF00560 LRR_1: Leucine Rich R 95.0 0.0098 2.1E-07 30.8 0.7 7 507-513 4-10 (22)
73 PF00560 LRR_1: Leucine Rich R 94.8 0.016 3.5E-07 30.0 1.1 19 481-500 2-20 (22)
74 KOG4308 LRR-containing protein 94.3 0.00025 5.4E-09 70.7 -11.8 181 359-540 88-303 (478)
75 KOG3864 Uncharacterized conser 92.6 0.02 4.3E-07 48.7 -1.4 35 383-417 102-136 (221)
76 KOG4308 LRR-containing protein 92.4 0.00074 1.6E-08 67.4 -12.0 186 330-515 111-330 (478)
77 PF13504 LRR_7: Leucine rich r 91.9 0.098 2.1E-06 25.0 1.1 10 505-514 3-12 (17)
78 PF13516 LRR_6: Leucine Rich r 90.4 0.11 2.4E-06 27.4 0.5 15 479-493 2-16 (24)
79 KOG0473 Leucine-rich repeat pr 88.2 0.014 3E-07 50.6 -6.1 84 477-563 40-123 (326)
80 smart00369 LRR_TYP Leucine-ric 87.3 0.44 9.6E-06 25.7 1.6 16 527-542 2-17 (26)
81 smart00370 LRR Leucine-rich re 87.3 0.44 9.6E-06 25.7 1.6 16 527-542 2-17 (26)
82 smart00369 LRR_TYP Leucine-ric 86.9 0.61 1.3E-05 25.1 2.0 13 480-492 3-15 (26)
83 smart00370 LRR Leucine-rich re 86.9 0.61 1.3E-05 25.1 2.0 13 480-492 3-15 (26)
84 KOG0473 Leucine-rich repeat pr 85.2 0.016 3.5E-07 50.2 -7.2 94 11-107 33-126 (326)
85 smart00368 LRR_RI Leucine rich 74.0 2.4 5.2E-05 23.4 1.5 14 551-564 2-15 (28)
86 smart00365 LRR_SD22 Leucine-ri 72.0 3.6 7.7E-05 22.3 1.8 14 551-564 2-15 (26)
87 smart00364 LRR_BAC Leucine-ric 62.3 5.8 0.00013 21.4 1.4 14 527-540 2-15 (26)
88 smart00367 LRR_CC Leucine-rich 60.8 6 0.00013 21.2 1.3 12 503-514 2-13 (26)
89 KOG3763 mRNA export factor TAP 50.2 8.6 0.00019 38.6 1.4 65 404-468 216-283 (585)
90 KOG3763 mRNA export factor TAP 44.5 12 0.00026 37.7 1.4 63 380-444 216-283 (585)
91 TIGR00864 PCC polycystin catio 21.3 59 0.0013 40.2 2.1 33 2-34 1-33 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.5e-56 Score=491.56 Aligned_cols=536 Identities=33% Similarity=0.509 Sum_probs=372.7
Q ss_pred CCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhc-cCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEE
Q 047977 20 SNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQL-SNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLS 98 (569)
Q Consensus 20 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 98 (569)
.+++.|+++++.+.+..+.++..+++|++|++++|.+.+.+|..+ ..+++|++|++++|.+....+. ..+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 467777777777776677777777777777777777765555543 3777777777777766543322 3467777777
Q ss_pred cccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccCCccc
Q 047977 99 LCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFS 178 (569)
Q Consensus 99 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 178 (569)
+++|.+.+..|..++.+++|++|++++|.+.+.+|..+ .++++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence 77777766677777777777777777777766666543 67777777777777776666777777777777777777776
Q ss_pred cCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCc
Q 047977 179 GPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLS 258 (569)
Q Consensus 179 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~ 258 (569)
...+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|+.+++++|.+....+..+.
T Consensus 226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 305 (968)
T PLN00113 226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305 (968)
T ss_pred CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc
Confidence 66666677777777777777777666777777777777777777777666666666777777777777777666666666
Q ss_pred CCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCE
Q 047977 259 NLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEK 338 (569)
Q Consensus 259 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 338 (569)
.+++|+.|++++|.+.+..+.. +..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+..|..+..+++|+.
T Consensus 306 ~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~ 384 (968)
T PLN00113 306 QLQNLEILHLFSNNFTGKIPVA-LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFK 384 (968)
T ss_pred CCCCCcEEECCCCccCCcCChh-HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCE
Confidence 7777777777777666444433 566677777777777776666666666777777777777776666666666677777
Q ss_pred EEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcc
Q 047977 339 LDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNF 418 (569)
Q Consensus 339 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~ 418 (569)
|++++|.+....+..+..+++|+.|++++|.+++..+..+..++.|+.+++++|.+.+..+..+..+++|+.+++++|.+
T Consensus 385 L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~ 464 (968)
T PLN00113 385 LILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKF 464 (968)
T ss_pred EECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCcee
Confidence 77777777666666677777777777777777666666667777777777777777766666666677777777777777
Q ss_pred cccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhh
Q 047977 419 SGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRA 498 (569)
Q Consensus 419 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 498 (569)
.+..|..+.. ++|+.|++++|++.+..|..+..+++|+.|++++|.+.+..|..+.++++|++|++++|.+++.+|..
T Consensus 465 ~~~~p~~~~~--~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 542 (968)
T PLN00113 465 FGGLPDSFGS--KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS 542 (968)
T ss_pred eeecCccccc--ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChh
Confidence 6666554432 36777777777776666666666777777777777776666766777777777777777777777777
Q ss_pred hcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCc
Q 047977 499 FGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNE 562 (569)
Q Consensus 499 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 562 (569)
++.+++|++|++++|++.+.+|..+..+++|+.|++++|++.+.+|.. +....+....+.+|+
T Consensus 543 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 543 FSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNI 605 (968)
T ss_pred HhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCc
Confidence 777777777777777777667777777777777777777777666643 223334444445554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.8e-56 Score=492.81 Aligned_cols=520 Identities=35% Similarity=0.545 Sum_probs=480.9
Q ss_pred CCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCC-CCccCCCCCCCcEEEcccccccccCCccccCCCCCCEE
Q 047977 43 LSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETP-DWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYL 121 (569)
Q Consensus 43 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 121 (569)
..+++.|+++++.+.+..+..+..+++|++|++++|.+... +...+..+.+|++|++++|.+.+..|. +.+++|++|
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 45799999999999888888999999999999999998744 444456899999999999999866664 468999999
Q ss_pred EcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcc
Q 047977 122 DLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSF 201 (569)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 201 (569)
++++|.+.+.+|..+ .++++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+
T Consensus 146 ~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 146 DLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred ECcCCcccccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 999999987777664 8999999999999999888888999999999999999999888888999999999999999999
Q ss_pred eecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccc
Q 047977 202 TGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANL 281 (569)
Q Consensus 202 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 281 (569)
.+..|..+..+++|++|++++|.+....+..++.+++|+.+++++|.+.+..+..+..+++|+.|++++|.+.+.++..
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~- 303 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL- 303 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChh-
Confidence 9889999999999999999999998888889999999999999999998888888999999999999999988666654
Q ss_pred cCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCC
Q 047977 282 IGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLL 361 (569)
Q Consensus 282 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 361 (569)
+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+....+..+..+++|+
T Consensus 304 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~ 383 (968)
T PLN00113 304 VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLF 383 (968)
T ss_pred HcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCC
Confidence 77899999999999999888888899999999999999999988999999999999999999999888888999999999
Q ss_pred EEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccC
Q 047977 362 SLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNN 441 (569)
Q Consensus 362 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 441 (569)
.+++++|.+.+..+..+..+++|+.+++++|.+.+..|..+..++.|+.+++++|.+++.++..+..++ +|+.|++++|
T Consensus 384 ~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~n 462 (968)
T PLN00113 384 KLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP-SLQMLSLARN 462 (968)
T ss_pred EEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCC-CCcEEECcCc
Confidence 999999999988888999999999999999999988999999999999999999999998888777776 9999999999
Q ss_pred cCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCc
Q 047977 442 SFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISP 521 (569)
Q Consensus 442 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 521 (569)
.+.+.+|..+ ..++|+.|++++|++.+..|..+.++++|++|++++|.+.+.+|..++.+++|++|++++|.+++.+|.
T Consensus 463 ~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 541 (968)
T PLN00113 463 KFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA 541 (968)
T ss_pred eeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCCh
Confidence 9987777644 458999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCcccCC
Q 047977 522 DWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGKNS 568 (569)
Q Consensus 522 ~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 568 (569)
.|+.+++|+.|++++|++++..|..+..+++|++|++++|++.|.+|
T Consensus 542 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 542 SFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred hHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 99999999999999999999999999999999999999999999988
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=9.7e-38 Score=292.31 Aligned_cols=363 Identities=26% Similarity=0.282 Sum_probs=278.1
Q ss_pred CcCCCCCCcccCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCC
Q 047977 1 LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFL 80 (569)
Q Consensus 1 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 80 (569)
||+++|.+..+..+.|.++++|+.+++..|.++ .+|.......+|+.|++.+|.|...-...+.-++-|++||++.|.+
T Consensus 83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~i 161 (873)
T KOG4194|consen 83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLI 161 (873)
T ss_pred eeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchh
Confidence 577888888777888888888888888888777 6676666667788888888877766666777778888888888888
Q ss_pred CCCCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcC
Q 047977 81 ETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPN 160 (569)
Q Consensus 81 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 160 (569)
..+....|..-.++++|++++|.|+..-...|..+.+|..|.+++|+++ .+|...|.++++|+.|++..|++.-...-.
T Consensus 162 s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~lt 240 (873)
T KOG4194|consen 162 SEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLT 240 (873)
T ss_pred hcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhh
Confidence 7777777777778888888888887666667777778888888888887 677777777888888888888776444556
Q ss_pred CCCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCC
Q 047977 161 VSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLS 240 (569)
Q Consensus 161 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 240 (569)
|..+++|+.|.+..|.+.......|..+.+++.|++..|.+...-..|+-.++.|+.|+++.|.|..+.+..+..+++|+
T Consensus 241 FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~ 320 (873)
T KOG4194|consen 241 FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLK 320 (873)
T ss_pred hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccce
Confidence 77788888888888887766667777888888888888877766667777888888888888888777777777788888
Q ss_pred EEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeC---CccccCCCCCcEEec
Q 047977 241 FLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNI---PPEIGLLTKLQYLFL 317 (569)
Q Consensus 241 ~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l 317 (569)
+|+++.|++++..+..|..+..|++|+++.|.+. .+....|.++++|+.|+++.|.+...+ ...|.++++|++|.+
T Consensus 321 ~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l 399 (873)
T KOG4194|consen 321 ELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRL 399 (873)
T ss_pred eEeccccccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheee
Confidence 8888888888777777777788888888888776 666666777888888888887665432 344667788888888
Q ss_pred ccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEccc
Q 047977 318 YRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFF 367 (569)
Q Consensus 318 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 367 (569)
.+|++......+|.++++|+.|++.+|.+..+-+.+|..+ .|++|.+..
T Consensus 400 ~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 400 TGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred cCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 8887776555677778888888888888776667777776 777776654
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-37 Score=288.96 Aligned_cols=388 Identities=23% Similarity=0.230 Sum_probs=227.5
Q ss_pred cEEeccCCcccccCCcCCCC--CCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcc
Q 047977 144 EYLNLTDNQFQGKLSPNVSK--LSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLR 221 (569)
Q Consensus 144 ~~L~l~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 221 (569)
+.|+.++..+...-...+.. .+.-++|++++|.+++..+..|.++++|+++.+..|.++ .+|...+...+++.|++.
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLR 133 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeee
Confidence 44566665554322222211 234556777777777766666777777777777777776 456555555667777777
Q ss_pred cCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceee
Q 047977 222 MNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGN 301 (569)
Q Consensus 222 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 301 (569)
.|.|.....+.++.++.|++++++.|.++......+..-.++++|++++|.|+ .+....|..+.+|..+.++.|.++..
T Consensus 134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNrittL 212 (873)
T KOG4194|consen 134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRITTL 212 (873)
T ss_pred ccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccc-ccccccccccchheeeecccCccccc
Confidence 77777666666777777777777777776655555655566666666666666 44444456666666666666666644
Q ss_pred CCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCC
Q 047977 302 IPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSM 381 (569)
Q Consensus 302 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 381 (569)
.+..|..+++|+.|++..|+|.-.-.-.|.++++|+.|.+..|.+.......|..+.++++|++..|++...-..++.++
T Consensus 213 p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL 292 (873)
T KOG4194|consen 213 PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL 292 (873)
T ss_pred CHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc
Confidence 44455556666666666665542212345555666666666665554555555555556666665555554444555555
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEE
Q 047977 382 ASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELT 461 (569)
Q Consensus 382 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 461 (569)
++|+.|+++.|.+....++.+..++ +|++|+|+.|++....+..+..+.+|++|.
T Consensus 293 t~L~~L~lS~NaI~rih~d~Wsftq-------------------------kL~~LdLs~N~i~~l~~~sf~~L~~Le~Ln 347 (873)
T KOG4194|consen 293 TSLEQLDLSYNAIQRIHIDSWSFTQ-------------------------KLKELDLSSNRITRLDEGSFRVLSQLEELN 347 (873)
T ss_pred chhhhhccchhhhheeecchhhhcc-------------------------cceeEeccccccccCChhHHHHHHHhhhhc
Confidence 5555555555555544444444444 455555555554433334444455556666
Q ss_pred ccCCcceeeCCccccCCCCCcEEEccCCccccchh---hhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCc
Q 047977 462 VNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNIT---RAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNK 538 (569)
Q Consensus 462 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 538 (569)
+++|++.......|..+.+|++|||++|.++..+. ..|..+++|+.|++.+|++....-.+|.++++|++|++.+|.
T Consensus 348 Ls~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 348 LSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred ccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCc
Confidence 66665553333455556666666666666544332 235556666666666666654444456666666666666666
Q ss_pred ceecCCcCccCCCCCCeEeCc
Q 047977 539 ISGGIPAELGNLTRLGVLSLD 559 (569)
Q Consensus 539 ~~~~~~~~l~~l~~L~~L~l~ 559 (569)
|-++.+.+|..| .|++|-+.
T Consensus 428 iaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 428 IASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred ceeecccccccc-hhhhhhhc
Confidence 666666666666 66665543
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=6.9e-39 Score=286.97 Aligned_cols=478 Identities=28% Similarity=0.386 Sum_probs=373.7
Q ss_pred CCCCEEECCCCCCCCCCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEe
Q 047977 68 RKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLN 147 (569)
Q Consensus 68 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 147 (569)
..++.+.+++|.+.... ..+..+..|..+++.++... ..|.+++.+..++.++.++|++. .+|+.+ ....++++++
T Consensus 45 v~l~~lils~N~l~~l~-~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i-~s~~~l~~l~ 120 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLR-EDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQI-GSLISLVKLD 120 (565)
T ss_pred cchhhhhhccCchhhcc-HhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHH-hhhhhhhhhh
Confidence 46788888888877654 45678889999999999988 78888999999999999999987 778776 7888999999
Q ss_pred ccCCcccccCCcCCCCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCc
Q 047977 148 LTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNS 227 (569)
Q Consensus 148 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 227 (569)
++.+.+. ..++.++.+-.++.++..+|++. ..|+.+..+.++..+++.++++.. .|+..-.+..|++++...|.+.
T Consensus 121 ~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N~L~- 196 (565)
T KOG0472|consen 121 CSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSNLLE- 196 (565)
T ss_pred cccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccchhhhh-
Confidence 9999887 67778888889999999999887 567788889999999999999884 4544555888999998888776
Q ss_pred CCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCcccc
Q 047977 228 TIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIG 307 (569)
Q Consensus 228 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 307 (569)
..|..++.+.+|+.+++..|++. ..| .|.++..|+++++..|.+. .++++...+++++..+|+++|+++ +.|..+.
T Consensus 197 tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~c 272 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEIC 272 (565)
T ss_pred cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHH
Confidence 55677899999999999999987 445 7889999999999999887 778887889999999999999988 6788888
Q ss_pred CCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccC--CCCCEEE-------c---ccCcccc-c-
Q 047977 308 LLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNL--TNLLSLQ-------L---FFNNLSG-T- 373 (569)
Q Consensus 308 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~-------l---~~~~~~~-~- 373 (569)
.+.+|..|++++|.++ ..|..++++ .|+.|.+.+|++..+-.+.+.+- .-|++|. + .+..-+. .
T Consensus 273 lLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~ 350 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTL 350 (565)
T ss_pred HhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCC
Confidence 8899999999999998 677788888 89999999998752211111100 0011110 0 0000000 0
Q ss_pred CC---ccccCCCCCCEEEccCCcccccCCccccCCC---CCCEEEccCCcccccCCchhhccCCCCceEEcccCcCcccc
Q 047977 374 IP---PEIGSMASLVAFDVNTNQLHGELPENISRLV---NLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGEL 447 (569)
Q Consensus 374 ~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~---~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 447 (569)
.. .......+.+.|++++-+++ .+|....... -+..++++.|++. .+|..+..+..-+..+.+++|.+. -+
T Consensus 351 ~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv 427 (565)
T KOG0472|consen 351 PSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FV 427 (565)
T ss_pred CCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cc
Confidence 11 11233456788888888877 5665443333 3778889998887 667766665533445566666664 77
Q ss_pred ChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCC
Q 047977 448 PYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECR 527 (569)
Q Consensus 448 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~ 527 (569)
|..++.+++|+.|++++|-+. .+|..+..+..|+.|+++.|.|. ..|..+..+..++.+-.++|.+....+.+++++.
T Consensus 428 ~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~ 505 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMR 505 (565)
T ss_pred hHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhh
Confidence 888899999999999999887 78888888888999999999887 5788777788888888888998877777799999
Q ss_pred CCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCcc
Q 047977 528 NLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTG 565 (569)
Q Consensus 528 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 565 (569)
+|..||+.+|.+. .+|..+++|++|++|.+.||||+.
T Consensus 506 nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 506 NLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred hcceeccCCCchh-hCChhhccccceeEEEecCCccCC
Confidence 9999999999999 577789999999999999999984
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.3e-38 Score=285.10 Aligned_cols=479 Identities=28% Similarity=0.354 Sum_probs=385.7
Q ss_pred CCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEE
Q 047977 43 LSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLD 122 (569)
Q Consensus 43 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 122 (569)
-.-|+.+.+++|.+. .+...+.++..+.++++.+|.....+ .+++.+..++.++.+++.+. .+|..++..+.+++++
T Consensus 44 qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~~lp-~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 44 QVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLSQLP-AAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD 120 (565)
T ss_pred hcchhhhhhccCchh-hccHhhhcccceeEEEeccchhhhCC-HHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence 356899999999988 44556889999999999999887654 56788899999999999998 8999999999999999
Q ss_pred cccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcce
Q 047977 123 LSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFT 202 (569)
Q Consensus 123 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 202 (569)
++.|... +++..+ ..+..++.++..+|++. ..|+.+..+.++..+++.++.+....+..+. ++.|+.++...|.+.
T Consensus 121 ~s~n~~~-el~~~i-~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~ 196 (565)
T KOG0472|consen 121 CSSNELK-ELPDSI-GRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE 196 (565)
T ss_pred cccccee-ecCchH-HHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh
Confidence 9999988 666665 77789999999999998 6788888999999999999998855554444 999999999998887
Q ss_pred ecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCcccc
Q 047977 203 GQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLI 282 (569)
Q Consensus 203 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 282 (569)
.+|+.++.+.+|+.|+++.|++.. .| .|.+|..|+++++..|.+.........+++++..|++++|+++ +.|.+ .
T Consensus 197 -tlP~~lg~l~~L~~LyL~~Nki~~-lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde-~ 271 (565)
T KOG0472|consen 197 -TLPPELGGLESLELLYLRRNKIRF-LP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDE-I 271 (565)
T ss_pred -cCChhhcchhhhHHHHhhhccccc-CC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchH-H
Confidence 689999999999999999999974 44 7899999999999999998555555568999999999999998 55555 5
Q ss_pred CCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccC-----CCCCCE----EEccCCccc------
Q 047977 283 GNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGK-----LTSLEK----LDLSGNQLS------ 347 (569)
Q Consensus 283 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~----L~l~~~~~~------ 347 (569)
.-+++|+.+|+++|.++ ..|..++++ .|+.|.+.+|++.+.-.+.+.. ++.|+. =-++...-.
T Consensus 272 clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t 349 (565)
T KOG0472|consen 272 CLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT 349 (565)
T ss_pred HHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC
Confidence 67899999999999998 578889999 9999999999876321111100 111111 001111000
Q ss_pred --cccCcccccCCCCCEEEcccCcccccCCccccCC--CCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCC
Q 047977 348 --GTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSM--ASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIP 423 (569)
Q Consensus 348 --~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 423 (569)
...........+.++|++++-+++....+.|... .-.+.+++++|++. ++|..+..+..+.+.-+..++..+.+|
T Consensus 350 ~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~ 428 (565)
T KOG0472|consen 350 LPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVP 428 (565)
T ss_pred CCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccch
Confidence 0011122345678999999999884444444432 34889999999998 888877777666655444454554677
Q ss_pred chhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCC
Q 047977 424 GDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHP 503 (569)
Q Consensus 424 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 503 (569)
..+..++ +|..|++++|.+. .+|...+.+..|+.|+++.|+|. ..|.++.....++.+-.++|.+....+..++++.
T Consensus 429 ~~l~~l~-kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~ 505 (565)
T KOG0472|consen 429 LELSQLQ-KLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMR 505 (565)
T ss_pred HHHHhhh-cceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhh
Confidence 7777776 9999999999886 78999999999999999999999 8999988888888888888999988888899999
Q ss_pred CCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcce
Q 047977 504 RLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKIS 540 (569)
Q Consensus 504 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 540 (569)
.|..||+.+|.+. .+|+.++++++|++|++++|++.
T Consensus 506 nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 506 NLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 9999999999987 78999999999999999999998
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=4.7e-35 Score=288.78 Aligned_cols=462 Identities=29% Similarity=0.401 Sum_probs=270.9
Q ss_pred CCEEECCCCCCCCCCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEecc
Q 047977 70 VRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLT 149 (569)
Q Consensus 70 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 149 (569)
++.|+++.|.....+.....+..+|+.|++++|.+. ..|..+..+++|+.|+++.|.+. .+|... .++.+|+++.+.
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~-~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSC-SNMRNLQYLNLK 99 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhh-hhhhcchhheec
Confidence 444444444443333233333444555555555555 45555555556666666655554 344332 455556666665
Q ss_pred CCcccccCCcCCCCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcCC
Q 047977 150 DNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTI 229 (569)
Q Consensus 150 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 229 (569)
+|..+ ..|..+..+++|+.|+++.|.+. ..|..+..+..++.+..++|..... ++... ++.+++..+.+....
T Consensus 100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~ 172 (1081)
T KOG0618|consen 100 NNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSF 172 (1081)
T ss_pred cchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccch
Confidence 55554 44555555666666666665554 2344444555555555555521111 11111 455555555544444
Q ss_pred CcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCC
Q 047977 230 PPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLL 309 (569)
Q Consensus 230 ~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 309 (569)
...+..+.+ .+++.+|.+. ...+..+++|+.+....+.+. .+. -.-++++.|+.+.|.+....+ ....
T Consensus 173 ~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls-~l~----~~g~~l~~L~a~~n~l~~~~~--~p~p 240 (1081)
T KOG0618|consen 173 LIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLS-ELE----ISGPSLTALYADHNPLTTLDV--HPVP 240 (1081)
T ss_pred hcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccc-eEE----ecCcchheeeeccCcceeecc--cccc
Confidence 444444443 4555555554 123445556666665555544 111 123667777777776663322 2234
Q ss_pred CCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEc
Q 047977 310 TKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDV 389 (569)
Q Consensus 310 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 389 (569)
.+|+.++++.+.++ ..|.++..+.+|+.++...|.++ ..+..+....+|+.+.+..|++. .++......++|+.|++
T Consensus 241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence 56777777777777 55577777777777777777775 55666666777777777777776 45555666777777777
Q ss_pred cCCcccccCCcc-ccCCCC-CCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcc
Q 047977 390 NTNQLHGELPEN-ISRLVN-LNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNF 467 (569)
Q Consensus 390 ~~~~~~~~~~~~-~~~l~~-L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 467 (569)
..|.+. ..|.. +.-... ++.+..+.+++. ..|..-....+.|+.|++.+|.+++.....+-....|+.|++++|++
T Consensus 318 ~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL 395 (1081)
T KOG0618|consen 318 QSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL 395 (1081)
T ss_pred hhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence 777776 33332 222222 455555555554 22221112223677788888888776666677777888888888887
Q ss_pred eeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCccee-cCCcC
Q 047977 468 TGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISG-GIPAE 546 (569)
Q Consensus 468 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~-~~~~~ 546 (569)
.......+.++..|++|++|+|+++ -+|..+.+++.|++|...+|.+. ..| .+..+++|+.+|++.|.++. ..|..
T Consensus 396 ~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~ 472 (1081)
T KOG0618|consen 396 NSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEA 472 (1081)
T ss_pred ccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhh
Confidence 7333356777888888888888887 35577778888888888888776 445 77778888888888887773 23332
Q ss_pred ccCCCCCCeEeCcCCc
Q 047977 547 LGNLTRLGVLSLDSNE 562 (569)
Q Consensus 547 l~~l~~L~~L~l~~n~ 562 (569)
.-. +.|++||++||.
T Consensus 473 ~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 473 LPS-PNLKYLDLSGNT 487 (1081)
T ss_pred CCC-cccceeeccCCc
Confidence 222 678888888876
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=5.1e-34 Score=281.55 Aligned_cols=505 Identities=26% Similarity=0.313 Sum_probs=292.3
Q ss_pred CcCCCCCCcccCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCC
Q 047977 1 LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFL 80 (569)
Q Consensus 1 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 80 (569)
+|.++++++ .+|+.+..-.++..|+++.|-+-....++..++.+|+.|++++|.+. .+|..+..+++|+.|+++.|.+
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i 80 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI 80 (1081)
T ss_pred cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH
Confidence 578888887 66777777777999999988766444555666777999999999887 7888888999999999999988
Q ss_pred CCCCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcC
Q 047977 81 ETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPN 160 (569)
Q Consensus 81 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 160 (569)
...+ .....+.+|+++.|..|... ..|..+..+.+|+.|+++.|... .+|..+ ..+..++.+..++|.-. . .
T Consensus 81 ~~vp-~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i-~~lt~~~~~~~s~N~~~-~---~ 152 (1081)
T KOG0618|consen 81 RSVP-SSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVI-EVLTAEEELAASNNEKI-Q---R 152 (1081)
T ss_pred hhCc-hhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhH-HhhhHHHHHhhhcchhh-h---h
Confidence 7765 55677888999999888877 78888888888999999888876 556554 66677777777777211 1 1
Q ss_pred CCCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCC
Q 047977 161 VSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLS 240 (569)
Q Consensus 161 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 240 (569)
++... ++.+++..+.+.......+..++. .+++..|.+.. ..+..+++|+.+....|++.... -.-++++
T Consensus 153 lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~ 222 (1081)
T KOG0618|consen 153 LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV---LDLSNLANLEVLHCERNQLSELE----ISGPSLT 222 (1081)
T ss_pred hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhhh---hhhhhccchhhhhhhhcccceEE----ecCcchh
Confidence 11111 556666655555444444444444 46666655541 12444555555555555543221 1124455
Q ss_pred EEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccc
Q 047977 241 FLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRN 320 (569)
Q Consensus 241 ~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 320 (569)
.++.+.|.++...... .-.+|+.++++.+... .++ +....+.+|+.++...|.++ ..|..+....+|+.+.+..|
T Consensus 223 ~L~a~~n~l~~~~~~p--~p~nl~~~dis~n~l~-~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~n 297 (1081)
T KOG0618|consen 223 ALYADHNPLTTLDVHP--VPLNLQYLDISHNNLS-NLP-EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYN 297 (1081)
T ss_pred eeeeccCcceeecccc--ccccceeeecchhhhh-cch-HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhh
Confidence 5555555554222211 1235555555555554 333 33555555555555555553 34444444555555555555
Q ss_pred cccccCCccccCCCCCCEEEccCCccccccCcccccCC-CCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCC
Q 047977 321 HFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLT-NLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELP 399 (569)
Q Consensus 321 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 399 (569)
.+. -+|.....+++|++|++..|.+.......+.-.. ++..+..+.+++.......-...+.|+.|.+.+|.+++..-
T Consensus 298 el~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~ 376 (1081)
T KOG0618|consen 298 ELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCF 376 (1081)
T ss_pred hhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccch
Confidence 554 3444444455555555555555422221111111 13444444444432221122233455666666666655544
Q ss_pred ccccCCCCCCEEEccCCcccccCCch-hhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCC
Q 047977 400 ENISRLVNLNKFSVFTNNFSGSIPGD-FGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNC 478 (569)
Q Consensus 400 ~~~~~l~~L~~l~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 478 (569)
..+.+...|+.|.+++|++. .+|+. +.++. .|+.|++++|++. .+|..+..+..|++|...+|.+. ..| .+..+
T Consensus 377 p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle-~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l 451 (1081)
T KOG0618|consen 377 PVLVNFKHLKVLHLSYNRLN-SFPASKLRKLE-ELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQL 451 (1081)
T ss_pred hhhccccceeeeeecccccc-cCCHHHHhchH-HhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhc
Confidence 45555666666666666655 33333 33333 6666666666665 55566666666666666666665 455 45566
Q ss_pred CCCcEEEccCCccccch-hhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCC
Q 047977 479 SNLNRVRFDGNQFTGNI-TRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRN 537 (569)
Q Consensus 479 ~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n 537 (569)
+.|+.+|++.|.++... ++... -|.|++||++||.-.....+.|..+.++...++.-+
T Consensus 452 ~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 452 PQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred CcceEEecccchhhhhhhhhhCC-CcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 66666666666664322 22211 156666666666543333344555555555555444
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=2.3e-32 Score=258.62 Aligned_cols=360 Identities=32% Similarity=0.488 Sum_probs=269.9
Q ss_pred CcCCCCCCc-ccCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCC
Q 047977 1 LDLSHNNIS-GPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNF 79 (569)
Q Consensus 1 l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 79 (569)
+|+++|.+. +.+|.....+++++.|.+..+++. .+|+.++.|.+|++|++++|++.+. -..+..++.||.+++..|.
T Consensus 12 vDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~~R~N~ 89 (1255)
T KOG0444|consen 12 VDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVIVRDNN 89 (1255)
T ss_pred ccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHhhhccc
Confidence 588999998 567999999999999999998888 7888999999999999999988733 3447888999999998887
Q ss_pred CCCC-CCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCC
Q 047977 80 LETP-DWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLS 158 (569)
Q Consensus 80 ~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 158 (569)
+... .+..+-.+..|..|++++|.+. ..|..+.+.+++-+|++++|+|. .+|..+|.++..|-.|++++|++. .+|
T Consensus 90 LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LP 166 (1255)
T KOG0444|consen 90 LKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLP 166 (1255)
T ss_pred cccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcC
Confidence 7543 3455667888999999999988 77888888889999999999987 788888999999999999999887 667
Q ss_pred cCCCCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcce-ecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCC
Q 047977 159 PNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFT-GQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCT 237 (569)
Q Consensus 159 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 237 (569)
+-+..+.+|++|.+++|.+.......+..++.|++|.+++.+-+ .-+|..+..+.+|+.++++.|
T Consensus 167 PQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-------------- 232 (1255)
T KOG0444|consen 167 PQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-------------- 232 (1255)
T ss_pred HHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc--------------
Confidence 77888888999999988876554455555566666666655432 234444444555555555544
Q ss_pred CCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEec
Q 047977 238 NLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFL 317 (569)
Q Consensus 238 ~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 317 (569)
.+. ..|..+.++++|+.|++++|.++ +.... .+.+.+|++|+++.|+++ .+|.++..+++|+.|++
T Consensus 233 ----------~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~-~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~ 298 (1255)
T KOG0444|consen 233 ----------NLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMT-EGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYA 298 (1255)
T ss_pred ----------CCC-cchHHHhhhhhhheeccCcCcee-eeecc-HHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHh
Confidence 444 44555666666666666666665 22222 455677788888888777 56777777888888888
Q ss_pred ccccccc-cCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCccc
Q 047977 318 YRNHFSG-PIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLH 395 (569)
Q Consensus 318 ~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 395 (569)
.+|+++- -+|..++.+.+|+++..++|.+. .+|..++.|+.|+.|.++.|.+. .+++.+.-++.|+.||+..|...
T Consensus 299 n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 299 NNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred ccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 7777653 36677777888888888777765 77778888888888888888776 66777777788888888777655
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=3.1e-31 Score=251.01 Aligned_cols=364 Identities=25% Similarity=0.339 Sum_probs=197.3
Q ss_pred CCCCCEEEccCCccc-cCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEE
Q 047977 164 LSNLTVLRLATNKFS-GPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFL 242 (569)
Q Consensus 164 ~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 242 (569)
+|-.+-.++++|.++ ...|.....++.++.|.+....+. .+|+.++.+.+|++|.+..|++.... ..+..++.|+.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vh-GELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVH-GELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhh-hhhccchhhHHH
Confidence 455667788888877 456667777888888888877776 57777888888888888887765432 234556666666
Q ss_pred Eccccccee-ccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEeccccc
Q 047977 243 ALAMNQLSG-GLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNH 321 (569)
Q Consensus 243 ~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 321 (569)
.+..|.+.. .+|..+-.+..|+.|+++.|++. +.|.. +....++-.|++++|++.+...+.|.++..|-.|++++|+
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~-LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTN-LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhh-hcchh-hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence 666665532 34444555566666666666655 33333 4444555566666665553322334455555566666665
Q ss_pred ccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCccc-ccCCccccCCCCCCEEEccCCcccccCCc
Q 047977 322 FSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLS-GTIPPEIGSMASLVAFDVNTNQLHGELPE 400 (569)
Q Consensus 322 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 400 (569)
+. .+|...+.+..|++|++++|++...-...+..+++|++|.+++.+-+ ..++..+.++.+|..+|++.|.+. .+|.
T Consensus 162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPe 239 (1255)
T KOG0444|consen 162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPE 239 (1255)
T ss_pred hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchH
Confidence 55 34444555556666666666554332233444455555555554433 124444555555555555555554 4555
Q ss_pred cccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCccee-eCCccccCCC
Q 047977 401 NISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTG-SLPACMRNCS 479 (569)
Q Consensus 401 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~ 479 (569)
++..+++|+.|++++|.++.. ........ +|++|+++.|+++ .+|..++++++|+.|.+.+|+++- -+|..++.+.
T Consensus 240 cly~l~~LrrLNLS~N~iteL-~~~~~~W~-~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~ 316 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSGNKITEL-NMTEGEWE-NLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI 316 (1255)
T ss_pred HHhhhhhhheeccCcCceeee-eccHHHHh-hhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence 555555555555555555421 11111111 4555555555554 445555555555555555554321 2344444444
Q ss_pred CCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCc
Q 047977 480 NLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNK 538 (569)
Q Consensus 480 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 538 (569)
.|+.+..++|.+. ..|+.+..|+.|+.|.+..|.+. .+|++++-++-|+.|++..|.
T Consensus 317 ~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 317 QLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred hhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 5555555444443 34444445555555555544443 344455555555555555443
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.7e-22 Score=223.19 Aligned_cols=288 Identities=21% Similarity=0.272 Sum_probs=120.0
Q ss_pred CCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEE
Q 047977 261 SRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLD 340 (569)
Q Consensus 261 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 340 (569)
.+|+.|++.++.+. .++.. ...+++|+.++++++.....+| .++.+++|+.|++++|.....+|..+..+++|+.|+
T Consensus 611 ~~L~~L~L~~s~l~-~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWDG-VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred cCCcEEECcCcccc-ccccc-cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 44444444444433 12111 2334444444444433222222 133444444444444433334444444444444444
Q ss_pred ccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccc
Q 047977 341 LSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSG 420 (569)
Q Consensus 341 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 420 (569)
+++|.....++..+ ++++|+.|++++|.....++.. ..+|+.|+++++.+. .+|..+ .+++|+.|.+.++....
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~ 761 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEK 761 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhh
Confidence 44443322333222 3444444444444332222211 234444444444433 233222 23444444443321100
Q ss_pred ------cCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccc
Q 047977 421 ------SIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGN 494 (569)
Q Consensus 421 ------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 494 (569)
..+......+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+ ++++|+.|++++|.....
T Consensus 762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRT 840 (1153)
T ss_pred ccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccc
Confidence 0001111122355555555554444455555555555555555543222344333 445555555555543322
Q ss_pred hhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCc
Q 047977 495 ITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNE 562 (569)
Q Consensus 495 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 562 (569)
.|. ..++|++|++++|.+. .+|..+..+++|+.|++++|.-...+|..+..+++|+.+++++|+
T Consensus 841 ~p~---~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 841 FPD---ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ccc---cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 322 1244555555555544 344445555555555555543332344444455555555555443
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=2.6e-22 Score=221.81 Aligned_cols=339 Identities=19% Similarity=0.243 Sum_probs=209.8
Q ss_pred cCcCCCCCCcEEEcccCc------ceecCCccccCCC-CCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCc
Q 047977 183 GDIGLMSNIQLVELFNNS------FTGQIPSSLGQLK-NLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPL 255 (569)
Q Consensus 183 ~~l~~~~~L~~L~l~~~~------~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 255 (569)
..|..+++|+.|.+..+. ....+|..+..++ +|+.|.+.++++... |..+ .+.+|+.|++.++.+.. .+.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~l-P~~f-~~~~L~~L~L~~s~l~~-L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCM-PSNF-RPENLVKLQMQGSKLEK-LWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCC-CCcC-CccCCcEEECcCccccc-ccc
Confidence 345667777777665432 1123444454443 577777777666533 3334 35677777777777663 344
Q ss_pred cCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCC
Q 047977 256 SLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTS 335 (569)
Q Consensus 256 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 335 (569)
.+..+++|+.++++++.....++. +..+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+ .+++
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s 705 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS 705 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence 456677777777777654445543 5667777777777776655667777777777777777775444555443 5677
Q ss_pred CCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccc-------cCCccccCCCCC
Q 047977 336 LEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHG-------ELPENISRLVNL 408 (569)
Q Consensus 336 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~~~~l~~L 408 (569)
|+.|++++|......+. ..++|++|++++|.+. .++..+ .+++|+.|.+.++.... ..+......++|
T Consensus 706 L~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL 780 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL 780 (1153)
T ss_pred CCEEeCCCCCCcccccc---ccCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccc
Confidence 77777777765433332 2356777777777765 333332 45666666665543210 011112224567
Q ss_pred CEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccC
Q 047977 409 NKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDG 488 (569)
Q Consensus 409 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 488 (569)
+.|++++|.....+|..+..++ +|+.|++++|.....+|..+ .+++|+.|++++|......|.. .++|++|++++
T Consensus 781 ~~L~Ls~n~~l~~lP~si~~L~-~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~ 855 (1153)
T PLN03210 781 TRLFLSDIPSLVELPSSIQNLH-KLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSR 855 (1153)
T ss_pred hheeCCCCCCccccChhhhCCC-CCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCC
Confidence 7777777766666777776665 77777777775444555544 5677777777777543334432 25677777777
Q ss_pred CccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCc
Q 047977 489 NQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNK 538 (569)
Q Consensus 489 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 538 (569)
|.+. .+|.+++.+++|++|++++|+-...+|..+..+++|+.+++++|.
T Consensus 856 n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 856 TGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 7776 456667777777777777776555566666777777777777774
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=3.4e-25 Score=199.08 Aligned_cols=421 Identities=21% Similarity=0.189 Sum_probs=260.1
Q ss_pred CcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccc-CccccCCchhhh
Q 047977 59 AFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSL-NKLSGLIPERLF 137 (569)
Q Consensus 59 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~ 137 (569)
.+|..++ +.-..+++..|.|+.+++.+|+.+++|+.|||++|.|..+.|++|..++.+..|.+.+ |+|+ .++..+|
T Consensus 60 eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F 136 (498)
T KOG4237|consen 60 EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAF 136 (498)
T ss_pred cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHh
Confidence 4555444 3566788888888888888888888888888888888888888888888888887776 7777 7888888
Q ss_pred hcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCE
Q 047977 138 TNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQH 217 (569)
Q Consensus 138 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 217 (569)
.++..++.|.+..+++.......+..++++..|.+..+.+..+....+..+..++.+.+..+.+.. ..+++.+..
T Consensus 137 ~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~ 211 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLAD 211 (498)
T ss_pred hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhh
Confidence 888888888888888776667778888888888888887765555567777777777666555321 111221111
Q ss_pred EEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcC-CCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCC
Q 047977 218 LDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSN-LSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNN 296 (569)
Q Consensus 218 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 296 (569)
... ..+..++...-.....+...++.+.....+.. ...+..--.+.+......+...|..+++|+.+++++|
T Consensus 212 ~~a-------~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN 284 (498)
T KOG4237|consen 212 DLA-------MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN 284 (498)
T ss_pred HHh-------hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC
Confidence 110 01111222222222223333333222222211 1111111122333444666677888888888888888
Q ss_pred cceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccc----
Q 047977 297 SFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSG---- 372 (569)
Q Consensus 297 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---- 372 (569)
+++..-+.+|....++++|.+.+|++...-..+|.++..|+.|++.+|+++...+..|..+.+|.+|.+-.|++--
T Consensus 285 ~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l 364 (498)
T KOG4237|consen 285 KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRL 364 (498)
T ss_pred ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccch
Confidence 8887777788888888888888888775555678888888888888888888888888888888888888776531
Q ss_pred -cCCcccc-----------CCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEccc
Q 047977 373 -TIPPEIG-----------SMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSN 440 (569)
Q Consensus 373 -~~~~~~~-----------~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 440 (569)
.+.+|+. ....++.+.+++..+...- +..=++. +|.-++..|..- +.+.+..=..
T Consensus 365 ~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~------c~~~ee~---~~~~s~~cP~~c----~c~~tVvRcS 431 (498)
T KOG4237|consen 365 AWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFR------CGGPEEL---GCLTSSPCPPPC----TCLDTVVRCS 431 (498)
T ss_pred HHHHHHHhhCCCCCCCCCCCCchhccccchhccccccc------cCCcccc---CCCCCCCCCCCc----chhhhhHhhc
Confidence 1111211 1222333333333222100 0000000 000011111111 1222222222
Q ss_pred CcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCC
Q 047977 441 NSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGN 513 (569)
Q Consensus 441 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 513 (569)
+.....+|..+.. .-++|++.+|.++ .+|.. .+.+| .+|+++|+++......|.+++.|.+|-|++|
T Consensus 432 nk~lk~lp~~iP~--d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 432 NKLLKLLPRGIPV--DVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred ccchhhcCCCCCc--hhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 2222244443322 4578888888888 66664 55677 8888988888666777888888888888775
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=7.1e-25 Score=197.04 Aligned_cols=411 Identities=22% Similarity=0.223 Sum_probs=236.3
Q ss_pred CCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccC-CccccCCCcCcCCCCCCcEE
Q 047977 116 RNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLAT-NKFSGPIPGDIGLMSNIQLV 194 (569)
Q Consensus 116 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L 194 (569)
+.-..+++..|.|+ .+|..+|..+++||+|++++|.++.+.+.+|..++++..|-+.+ |++++.....|.++..++.|
T Consensus 67 ~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 35667888888887 77888888888888888888888878888888888887777766 77777777778888888888
Q ss_pred EcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCc
Q 047977 195 ELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLS 274 (569)
Q Consensus 195 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 274 (569)
.+..+++.....+.|.+++++..|.+.+|.+..+....|..+..++.+.+..+.+.. ..+++.+..........
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~a~~~ie- 219 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDLAMNPIE- 219 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhhHHhhchhh-
Confidence 888888777777778888888888888888776666677778888888777665321 11222222111100000
Q ss_pred cccCccccCCCCCCcEEEccCCcceeeCCccccC-CCCCcEEecccccccccC-CccccCCCCCCEEEccCCccccccCc
Q 047977 275 GEISANLIGNWTELESLQIQNNSFMGNIPPEIGL-LTKLQYLFLYRNHFSGPI-PSEIGKLTSLEKLDLSGNQLSGTIPP 352 (569)
Q Consensus 275 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~ 352 (569)
+++++-.....+....+..+-+..|.. ..++.+=..+.|...... ...|..+++|++|++++|.++.+...
T Consensus 220 -------tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~ 292 (498)
T KOG4237|consen 220 -------TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDG 292 (498)
T ss_pred -------cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhh
Confidence 111111111112222221111111111 111111111122111111 13456666666677766666666666
Q ss_pred ccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccccc-CCchhhc---
Q 047977 353 TLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGS-IPGDFGK--- 428 (569)
Q Consensus 353 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~--- 428 (569)
+|.....+++|.+.+|++.......|.++..|+.|++++|+++...|..|..+.+|.++++..|.+.-. -..++..
T Consensus 293 aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr 372 (498)
T KOG4237|consen 293 AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLR 372 (498)
T ss_pred hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHh
Confidence 666666677777766666555555666666677777777777666666666666677766666544211 0111111
Q ss_pred -----------cCCCCceEEcccCcCccc---cChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccc
Q 047977 429 -----------FSPSLINVSFSNNSFSGE---LPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGN 494 (569)
Q Consensus 429 -----------~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 494 (569)
-|-.++.+.+++..+.+. .|+.. +| . ..+.+-..|+-+....=..|+....
T Consensus 373 ~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~------------~~--~-~s~~cP~~c~c~~tVvRcSnk~lk~ 437 (498)
T KOG4237|consen 373 KKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEEL------------GC--L-TSSPCPPPCTCLDTVVRCSNKLLKL 437 (498)
T ss_pred hCCCCCCCCCCCCchhccccchhccccccccCCcccc------------CC--C-CCCCCCCCcchhhhhHhhcccchhh
Confidence 011233333333332110 00000 00 0 1112233444454443333444444
Q ss_pred hhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCC
Q 047977 495 ITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSN 561 (569)
Q Consensus 495 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 561 (569)
+|.. -...-.+|++.+|.++ .+|.. .+.+| .+++++|+++...-..|.+|+.|..|-|++|
T Consensus 438 lp~~--iP~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 438 LPRG--IPVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred cCCC--CCchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 5543 2346677888888877 44554 55667 7888888888766677788888888888775
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=3.9e-19 Score=182.28 Aligned_cols=238 Identities=27% Similarity=0.404 Sum_probs=110.8
Q ss_pred CCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcc
Q 047977 287 ELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLF 366 (569)
Q Consensus 287 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 366 (569)
+++.|++.+|.+.. +|. .+++|++|++++|+++ .+|.. .++|+.|++++|.+. .++.. .++|+.|+++
T Consensus 223 ~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls 290 (788)
T PRK15387 223 HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIF 290 (788)
T ss_pred CCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhc---hhhcCEEECc
Confidence 44445555444442 222 1344555555555544 22221 234555555555444 22211 1344555555
Q ss_pred cCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccc
Q 047977 367 FNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGE 446 (569)
Q Consensus 367 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 446 (569)
+|.++. ++. ..++|+.|++++|.+. .+|.. ..+|+.|.+++|.+++ +|. .+++|+.|++++|.+. .
T Consensus 291 ~N~Lt~-LP~---~p~~L~~LdLS~N~L~-~Lp~l---p~~L~~L~Ls~N~L~~-LP~----lp~~Lq~LdLS~N~Ls-~ 356 (788)
T PRK15387 291 GNQLTS-LPV---LPPGLQELSVSDNQLA-SLPAL---PSELCKLWAYNNQLTS-LPT----LPSGLQELSVSDNQLA-S 356 (788)
T ss_pred CCcccc-ccc---cccccceeECCCCccc-cCCCC---cccccccccccCcccc-ccc----cccccceEecCCCccC-C
Confidence 555442 221 1244555555555554 22221 1234455555555542 221 2235555555555554 2
Q ss_pred cChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccC
Q 047977 447 LPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGEC 526 (569)
Q Consensus 447 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~ 526 (569)
+|.. ..+|+.|++++|.+. .+|... .+|+.|++++|.++. +|.. .++|+.|++++|.+. .+|.. .
T Consensus 357 LP~l---p~~L~~L~Ls~N~L~-~LP~l~---~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~ 421 (788)
T PRK15387 357 LPTL---PSELYKLWAYNNRLT-SLPALP---SGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---P 421 (788)
T ss_pred CCCC---Ccccceehhhccccc-cCcccc---cccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---h
Confidence 3321 234555555555555 334321 345566666665552 2221 245666666666654 23432 2
Q ss_pred CCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCccc
Q 047977 527 RNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGK 566 (569)
Q Consensus 527 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 566 (569)
.+|+.|++++|+++ .+|..+..+++|+.|++++|+|+|.
T Consensus 422 ~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 422 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence 24555666666665 3555555666666666666666554
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.78 E-value=1.6e-18 Score=177.76 Aligned_cols=262 Identities=27% Similarity=0.368 Sum_probs=143.5
Q ss_pred CEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEeccc
Q 047977 240 SFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYR 319 (569)
Q Consensus 240 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 319 (569)
..++++.+.++ .+|..+. ++|+.|.+.+|.++ .++. ..++|+.|++++|.+.. +|. .+++|+.|++++
T Consensus 204 ~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~Lts-LP~---lp~sL~~L~Ls~ 271 (788)
T PRK15387 204 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFS 271 (788)
T ss_pred cEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCc-ccC---cccccceeeccC
Confidence 34455555444 2233232 24555555555554 2322 13556666666665552 232 134566666666
Q ss_pred ccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCC
Q 047977 320 NHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELP 399 (569)
Q Consensus 320 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 399 (569)
|.+. .+|.. ..+|+.|++++|.+.. ++. ..++|+.|++++|.++. ++. ....|+.|++++|.+. .+|
T Consensus 272 N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~---lp~~L~~L~Ls~N~L~-~LP 338 (788)
T PRK15387 272 NPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT-SLP 338 (788)
T ss_pred Cchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCC---CcccccccccccCccc-ccc
Confidence 6655 23321 2356666666666552 222 13556666666666552 222 1234666666666665 333
Q ss_pred ccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCC
Q 047977 400 ENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCS 479 (569)
Q Consensus 400 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 479 (569)
. + ..+|+.|++++|++++ +|. .+++|+.|++++|.+. .+|.. ..+|+.|++++|.++ .+|... +
T Consensus 339 ~-l--p~~Lq~LdLS~N~Ls~-LP~----lp~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l~---s 402 (788)
T PRK15387 339 T-L--PSGLQELSVSDNQLAS-LPT----LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVLP---S 402 (788)
T ss_pred c-c--ccccceEecCCCccCC-CCC----CCcccceehhhccccc-cCccc---ccccceEEecCCccc-CCCCcc---c
Confidence 2 1 1356667777766663 332 2346666777777665 34432 245777777777766 344322 4
Q ss_pred CCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCc
Q 047977 480 NLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAEL 547 (569)
Q Consensus 480 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l 547 (569)
+|+.|++++|.++. +|.. +.+|+.|++++|.++ .+|..+..+++|+.|++++|++++..+..+
T Consensus 403 ~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 403 ELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 67777777777763 3432 345667777777766 566667777777777777777776555544
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=6.7e-20 Score=176.80 Aligned_cols=209 Identities=22% Similarity=0.247 Sum_probs=125.9
Q ss_pred cccCCCCCEEEcccCcccccCCccccCC---CCCCEEEccCCcccc----cCCccccCC-CCCCEEEccCCcccccC---
Q 047977 354 LWNLTNLLSLQLFFNNLSGTIPPEIGSM---ASLVAFDVNTNQLHG----ELPENISRL-VNLNKFSVFTNNFSGSI--- 422 (569)
Q Consensus 354 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~----~~~~~~~~l-~~L~~l~l~~~~~~~~~--- 422 (569)
+..+++|+.|++++|.+....+..+..+ ++|+.|++++|.+.+ .+...+..+ ++|+.+++++|.+++..
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 3344455555555554432222222222 236666665555542 112233444 66677777777665322
Q ss_pred -CchhhccCCCCceEEcccCcCccc----cChhhhCCCCCcEEEccCCcceee----CCccccCCCCCcEEEccCCcccc
Q 047977 423 -PGDFGKFSPSLINVSFSNNSFSGE----LPYELCSGFALEELTVNGNNFTGS----LPACMRNCSNLNRVRFDGNQFTG 493 (569)
Q Consensus 423 -~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~ 493 (569)
...+..+. +|+.|++++|.+.+. ++..+...++|++|++++|.+++. +...+..+++|++|++++|.+.+
T Consensus 157 ~~~~~~~~~-~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 157 LAKALRANR-DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HHHHHHhCC-CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 22233333 677788877777632 223344556888888888877532 23456678889999999998875
Q ss_pred chhhhhc-----CCCCCcEEeCcCCcccc----cCCcCcccCCCCCEEECCCCcceec----CCcCccCC-CCCCeEeCc
Q 047977 494 NITRAFG-----VHPRLDFIRLSGNHFIG----EISPDWGECRNLSNLQLDRNKISGG----IPAELGNL-TRLGVLSLD 559 (569)
Q Consensus 494 ~~~~~l~-----~l~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~n~~~~~----~~~~l~~l-~~L~~L~l~ 559 (569)
.....+. ..+.|++|++++|.+++ .+...+..++.|+.+++++|.++.. ....+... +.|+++++.
T Consensus 236 ~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (319)
T cd00116 236 AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVK 315 (319)
T ss_pred HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccC
Confidence 3333322 24789999999998762 2233466678899999999998854 33334444 689999998
Q ss_pred CCcC
Q 047977 560 SNEL 563 (569)
Q Consensus 560 ~n~~ 563 (569)
.|+|
T Consensus 316 ~~~~ 319 (319)
T cd00116 316 DDSF 319 (319)
T ss_pred CCCC
Confidence 8875
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=5.5e-18 Score=175.16 Aligned_cols=246 Identities=24% Similarity=0.429 Sum_probs=119.2
Q ss_pred CCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEc
Q 047977 262 RLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDL 341 (569)
Q Consensus 262 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 341 (569)
+...|++++..++ .++.. + .+.++.|++++|.+. .+|..+ .++|+.|++++|.++ .+|..+. .+|+.|++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~-I--p~~L~~L~Ls~N~Lt-sLP~~l--~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLT-TIPAC-I--PEQITTLILDNNELK-SLPENL--QGNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcC-cCCcc-c--ccCCcEEEecCCCCC-cCChhh--ccCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 4456666665555 33332 1 245666666666655 233332 245666666666655 3444332 25666666
Q ss_pred cCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccccc
Q 047977 342 SGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGS 421 (569)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 421 (569)
++|.+. .++..+. .+|+.|++++|.+. .++..+. ++|+.|++++|.+. .+|..+. ++|+.|++++|.++.
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~- 318 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA- 318 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-
Confidence 666655 3333332 35666666666555 2333221 35666666666555 2333222 345555555555542
Q ss_pred CCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcC
Q 047977 422 IPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGV 501 (569)
Q Consensus 422 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 501 (569)
+|..+. ++|+.|++++|.++ .+|..+. ++|+.|++++|++. .+|..+. ++|+.|++++|.++. +|..+.
T Consensus 319 LP~~l~---~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~- 387 (754)
T PRK15370 319 LPETLP---PGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP- 387 (754)
T ss_pred CCcccc---ccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH-
Confidence 232221 25555555555554 2343332 35555555555554 3443332 455555555555552 333222
Q ss_pred CCCCcEEeCcCCcccccCCcCc----ccCCCCCEEECCCCcce
Q 047977 502 HPRLDFIRLSGNHFIGEISPDW----GECRNLSNLQLDRNKIS 540 (569)
Q Consensus 502 l~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~n~~~ 540 (569)
++|+.|++++|.+. .+|..+ ...+.+..|++.+|.++
T Consensus 388 -~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 -AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 24555555555554 333332 22345555555555554
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=3.4e-19 Score=171.86 Aligned_cols=208 Identities=23% Similarity=0.277 Sum_probs=114.4
Q ss_pred cCCCCCCEEEccCCccccccCcccccCCC---CCEEEcccCcccc----cCCccccCC-CCCCEEEccCCcccc----cC
Q 047977 331 GKLTSLEKLDLSGNQLSGTIPPTLWNLTN---LLSLQLFFNNLSG----TIPPEIGSM-ASLVAFDVNTNQLHG----EL 398 (569)
Q Consensus 331 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---L~~L~l~~~~~~~----~~~~~~~~~-~~L~~L~l~~~~~~~----~~ 398 (569)
..+++|++|++++|.+....+..+..+.. |++|++++|.+.. .+...+..+ ++|+.+++++|.+++ .+
T Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 33444555555444443222222222222 5555555554431 111122333 555556655555542 12
Q ss_pred CccccCCCCCCEEEccCCccccc----CCchhhccCCCCceEEcccCcCccc----cChhhhCCCCCcEEEccCCcceee
Q 047977 399 PENISRLVNLNKFSVFTNNFSGS----IPGDFGKFSPSLINVSFSNNSFSGE----LPYELCSGFALEELTVNGNNFTGS 470 (569)
Q Consensus 399 ~~~~~~l~~L~~l~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~ 470 (569)
+..+..+++|+.+++++|.+++. ++..+... ++|+.|++++|.+.+. +...+..+++|+.|++++|.+++.
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~ 236 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKAN-CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA 236 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhC-CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence 23444555666666666665532 11222333 2777777777766533 223445567788888888877642
Q ss_pred CCccc-----cCCCCCcEEEccCCcccc----chhhhhcCCCCCcEEeCcCCccccc----CCcCcccC-CCCCEEECCC
Q 047977 471 LPACM-----RNCSNLNRVRFDGNQFTG----NITRAFGVHPRLDFIRLSGNHFIGE----ISPDWGEC-RNLSNLQLDR 536 (569)
Q Consensus 471 ~~~~l-----~~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~~-~~L~~L~l~~ 536 (569)
....+ ...+.|++|++++|.++. .....+..+++|+++++++|++.+. ..+.+... +.|+.+++.+
T Consensus 237 ~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 237 GAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKD 316 (319)
T ss_pred HHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence 22211 124788888888888762 2344566778888888888888744 34445555 6888888877
Q ss_pred Ccc
Q 047977 537 NKI 539 (569)
Q Consensus 537 n~~ 539 (569)
|++
T Consensus 317 ~~~ 319 (319)
T cd00116 317 DSF 319 (319)
T ss_pred CCC
Confidence 753
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.72 E-value=1.4e-17 Score=172.20 Aligned_cols=246 Identities=24% Similarity=0.391 Sum_probs=154.7
Q ss_pred CCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEec
Q 047977 238 NLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFL 317 (569)
Q Consensus 238 ~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 317 (569)
+...+++++..++. +|..+. +.++.|++++|.++ .++... .++|+.|++++|.+. .+|..+ .++|+.|++
T Consensus 179 ~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l---~~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENL---QGNIKTLYANSNQLT-SIPATL--PDTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhh---ccCCCEEECCCCccc-cCChhh--hccccEEEC
Confidence 45667777766663 333332 46777777777776 444432 246777888777766 344433 346777888
Q ss_pred ccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCccccc
Q 047977 318 YRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGE 397 (569)
Q Consensus 318 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 397 (569)
++|.+. .+|..+. .+|+.|++++|.+. .++..+. ++|+.|++++|.++. ++..+ .++|+.|++++|.+. .
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l--p~sL~~L~Ls~N~Lt-~ 318 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHL--PSGITHLNVQSNSLT-A 318 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccc--hhhHHHHHhcCCccc-c
Confidence 777776 5555443 36777888777776 3444443 477778887777763 33322 246777777777776 3
Q ss_pred CCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccC
Q 047977 398 LPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRN 477 (569)
Q Consensus 398 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 477 (569)
+|..+ .++|+.|.+++|.+++ +|..+. ++|+.|++++|.+. .+|..+ .++|+.|++++|.++ .+|..+.
T Consensus 319 LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~---~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~- 387 (754)
T PRK15370 319 LPETL--PPGLKTLEAGENALTS-LPASLP---PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP- 387 (754)
T ss_pred CCccc--cccceeccccCCcccc-CChhhc---CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH-
Confidence 44433 2577777777777763 454432 47778888877775 455444 257778888887777 4555443
Q ss_pred CCCCcEEEccCCccccchhh----hhcCCCCCcEEeCcCCccc
Q 047977 478 CSNLNRVRFDGNQFTGNITR----AFGVHPRLDFIRLSGNHFI 516 (569)
Q Consensus 478 ~~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~ 516 (569)
.+|+.|++++|.+.. +|. .++.++.+..|++.+|++.
T Consensus 388 -~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 -AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCcc
Confidence 357777777777763 333 3344577777788777765
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=1.7e-17 Score=132.48 Aligned_cols=153 Identities=27% Similarity=0.432 Sum_probs=77.5
Q ss_pred CCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEE
Q 047977 405 LVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRV 484 (569)
Q Consensus 405 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 484 (569)
+..++.+.+++|+++ .+|.....+. +|+.|++++|++. .+|..++.+++|+.|++.-|++. ..|..|+.+|-|+.|
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~-nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELK-NLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhh-hhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 444444555555544 3333344443 5555555555554 44445555555555555555554 455555555555555
Q ss_pred EccCCcccc-chhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcC
Q 047977 485 RFDGNQFTG-NITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNEL 563 (569)
Q Consensus 485 ~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 563 (569)
|+++|.+.. ..|..|-.++.|+-|++++|.+. .+|.+.+.+++|+.|.+.+|.+. ..|..++.++.|++|.|+||++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 555555432 34444444555555555555554 44555555555555555555544 3455555555555555555554
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=7.4e-17 Score=128.82 Aligned_cols=154 Identities=32% Similarity=0.483 Sum_probs=104.4
Q ss_pred CcCCCCCCcccCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCC
Q 047977 1 LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFL 80 (569)
Q Consensus 1 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 80 (569)
|.||+|.++ ..|..++.+++|++|++.+|++. .+|..++.+++|+.|++.-|++. ..|..|+.+|-|+.||+.+|.+
T Consensus 38 LtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl 114 (264)
T KOG0617|consen 38 LTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNL 114 (264)
T ss_pred hhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcccccc
Confidence 346777776 44445777777777777777777 56777777777777777776665 6677777777777777777765
Q ss_pred CC-CCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCc
Q 047977 81 ET-PDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSP 159 (569)
Q Consensus 81 ~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 159 (569)
.. ..+..|..+..|+.|.+++|++. .+|..++++++|+.|.+..|.+- .+|..+ +.+.+|++|.+.+|+++ .+|+
T Consensus 115 ~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkei-g~lt~lrelhiqgnrl~-vlpp 190 (264)
T KOG0617|consen 115 NENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEI-GDLTRLRELHIQGNRLT-VLPP 190 (264)
T ss_pred ccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHH-HHHHHHHHHhcccceee-ecCh
Confidence 43 33445556677777777777776 66677777777777777777655 456555 66677777777777766 3443
Q ss_pred CC
Q 047977 160 NV 161 (569)
Q Consensus 160 ~l 161 (569)
.+
T Consensus 191 el 192 (264)
T KOG0617|consen 191 EL 192 (264)
T ss_pred hh
Confidence 33
No 23
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.30 E-value=6.5e-13 Score=116.27 Aligned_cols=132 Identities=20% Similarity=0.261 Sum_probs=96.5
Q ss_pred CCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCc
Q 047977 432 SLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLS 511 (569)
Q Consensus 432 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 511 (569)
.|+.+++++|.++ .+.++..-.|.++.|++++|.+. .+.. ++.+++|+.||+++|.++. +..+=..+-+++.|.++
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhHh-hhhhHhhhcCEeeeehh
Confidence 6667777777765 45556666678888888888887 3333 7778888888888888773 33333456788888888
Q ss_pred CCcccccCCcCcccCCCCCEEECCCCcceec-CCcCccCCCCCCeEeCcCCcCcccCCC
Q 047977 512 GNHFIGEISPDWGECRNLSNLQLDRNKISGG-IPAELGNLTRLGVLSLDSNELTGKNSY 569 (569)
Q Consensus 512 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~ 569 (569)
+|.+.+. .+++.+-+|..||+++|+|... ....++++|.|+++.+.+||+++.--|
T Consensus 361 ~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 361 QNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred hhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence 8887644 6788888888888888888732 334578888899999999988876443
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=5.5e-13 Score=122.84 Aligned_cols=88 Identities=18% Similarity=0.184 Sum_probs=45.2
Q ss_pred CCCCCCEEEccCCccccccC-cccccCCCCCEEEcccCccccc--CCccccCCCCCCEEEccCCcccccCCcc-ccCCCC
Q 047977 332 KLTSLEKLDLSGNQLSGTIP-PTLWNLTNLLSLQLFFNNLSGT--IPPEIGSMASLVAFDVNTNQLHGELPEN-ISRLVN 407 (569)
Q Consensus 332 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~ 407 (569)
++..|+++.+.++++..... .....|+.++.|++++|-+... +......+|+|+.|+++.|.+....... -..++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 45667777777776652221 3455666677777776655422 1223345566666666666554221111 112444
Q ss_pred CCEEEccCCccc
Q 047977 408 LNKFSVFTNNFS 419 (569)
Q Consensus 408 L~~l~l~~~~~~ 419 (569)
++.|.++.|.++
T Consensus 199 lK~L~l~~CGls 210 (505)
T KOG3207|consen 199 LKQLVLNSCGLS 210 (505)
T ss_pred hheEEeccCCCC
Confidence 555555555444
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.25 E-value=4.7e-13 Score=119.88 Aligned_cols=185 Identities=21% Similarity=0.265 Sum_probs=126.5
Q ss_pred cCCCCCCEEEccCCcccccCC----ccccCCCCCCEEEccCCcccccCCch------------hhccCCCCceEEcccCc
Q 047977 379 GSMASLVAFDVNTNQLHGELP----ENISRLVNLNKFSVFTNNFSGSIPGD------------FGKFSPSLINVSFSNNS 442 (569)
Q Consensus 379 ~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~l~l~~~~~~~~~~~~------------~~~~~~~L~~L~l~~~~ 442 (569)
..++.|+++++++|-+....+ ..+..+..|+.|.+.+|.+...--.. ....++.|+++...+|+
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 345556666666654432211 23445666666666666654221111 11234689999999998
Q ss_pred Cccc----cChhhhCCCCCcEEEccCCccee----eCCccccCCCCCcEEEccCCcccc----chhhhhcCCCCCcEEeC
Q 047977 443 FSGE----LPYELCSGFALEELTVNGNNFTG----SLPACMRNCSNLNRVRFDGNQFTG----NITRAFGVHPRLDFIRL 510 (569)
Q Consensus 443 ~~~~----~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l 510 (569)
+.+. +...+...+.|+.+.+..|.+.. .+...+..|++|+.|||..|-++. .+...+..+++|++|++
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 8643 22355667899999999997653 223457899999999999998864 34455778899999999
Q ss_pred cCCcccccCCcCc-----ccCCCCCEEECCCCccee----cCCcCccCCCCCCeEeCcCCcC
Q 047977 511 SGNHFIGEISPDW-----GECRNLSNLQLDRNKISG----GIPAELGNLTRLGVLSLDSNEL 563 (569)
Q Consensus 511 ~~~~~~~~~~~~l-----~~~~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~ 563 (569)
++|.+.......| ...|.|+.+.+.+|.|+. .+..++...+.|..|++++|.+
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 9998875543332 448899999999998883 3444556789999999999998
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.25 E-value=2.1e-13 Score=129.53 Aligned_cols=171 Identities=27% Similarity=0.446 Sum_probs=116.7
Q ss_pred CCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEcc
Q 047977 384 LVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVN 463 (569)
Q Consensus 384 L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 463 (569)
-...|++.|.+. ++|..+..+..|+.+.+++|.+- .+|.....+. .|.+++++.|++. .+|..++.+ -|+.|.++
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~-~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~s 151 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLE-ALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVS 151 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhh-HHHHhhhccchhh-cCChhhhcC-cceeEEEe
Confidence 334455666665 55555555666666666666655 5566666655 6777777777765 566666655 46777777
Q ss_pred CCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecC
Q 047977 464 GNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGI 543 (569)
Q Consensus 464 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 543 (569)
+|+++ .+|..++..+.|..||.++|.+. .+|..++.+.+|+.|.+.+|++. .+|+++..++ |..||+++|+++ .+
T Consensus 152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~i 226 (722)
T KOG0532|consen 152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YL 226 (722)
T ss_pred cCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ec
Confidence 77777 67777777777777777777776 45666777777777777777776 4455556544 777777777777 57
Q ss_pred CcCccCCCCCCeEeCcCCcCc
Q 047977 544 PAELGNLTRLGVLSLDSNELT 564 (569)
Q Consensus 544 ~~~l~~l~~L~~L~l~~n~~~ 564 (569)
|..|.+|..|++|-|.+||+.
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred chhhhhhhhheeeeeccCCCC
Confidence 777777777777777777775
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.17 E-value=1.6e-12 Score=116.60 Aligned_cols=91 Identities=25% Similarity=0.301 Sum_probs=53.2
Q ss_pred CccCCCCCCEEeCCCCcCcc----cCCccccCCCCCcEEEccCCc---cccCcc-------hhccCCCCCCEEECCCCCC
Q 047977 15 AIGTLSNLTFLDLNNNLFEG----SIPSEMGDLSELQYLSVYNNS---LNGAFP-------FQLSNLRKVRYLDLGGNFL 80 (569)
Q Consensus 15 ~~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~---~~~~~~-------~~l~~l~~L~~L~l~~~~~ 80 (569)
.+..+..++.+++++|.+.. .+.+.+.+.++|+..++++-- ....+| .++..+++|++|+||+|.+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 34556677788888877653 234445566777777776531 111222 3355666777777777766
Q ss_pred CCCCCccC----CCCCCCcEEEccccccc
Q 047977 81 ETPDWSKF----SNMPSLTHLSLCYNELT 105 (569)
Q Consensus 81 ~~~~~~~~----~~~~~L~~L~l~~~~~~ 105 (569)
....+..| +.+..|++|.+.+|.+.
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 55443332 34566666666666554
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.13 E-value=3.8e-11 Score=101.16 Aligned_cols=122 Identities=20% Similarity=0.184 Sum_probs=39.7
Q ss_pred CCceEEcccCcCccccChhhh-CCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeC
Q 047977 432 SLINVSFSNNSFSGELPYELC-SGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRL 510 (569)
Q Consensus 432 ~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 510 (569)
.++.|+|++|.+.. + +.+. .+.+|+.|++++|.++ .+ +.+..++.|++|++++|.++...+.....+|+|++|++
T Consensus 20 ~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KL-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-cc-cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 56777777777652 2 2333 3567777777777776 22 24666777777777777776433322235677777777
Q ss_pred cCCcccccC-CcCcccCCCCCEEECCCCcceecCC---cCccCCCCCCeEe
Q 047977 511 SGNHFIGEI-SPDWGECRNLSNLQLDRNKISGGIP---AELGNLTRLGVLS 557 (569)
Q Consensus 511 ~~~~~~~~~-~~~l~~~~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~ 557 (569)
++|++.+.. -..+..+++|+.|++.+|+++...- ..+..+|+|+.||
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 777765321 1235667777777777777763210 1134567777665
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.09 E-value=1.5e-10 Score=114.86 Aligned_cols=199 Identities=32% Similarity=0.471 Sum_probs=126.5
Q ss_pred CEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCC-CCCEEEccCCcccccCCccccCCCCCCEEEccC
Q 047977 337 EKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMA-SLVAFDVNTNQLHGELPENISRLVNLNKFSVFT 415 (569)
Q Consensus 337 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 415 (569)
..+....+.+. .....+...+.++.+++.++.++ .++....... +|+.+++++|.+. .++..+..++.|+.|++++
T Consensus 96 ~~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 96 PSLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred ceeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 35666666653 22223444577888888888887 4444555553 7888888888887 4445667778888888888
Q ss_pred CcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccch
Q 047977 416 NNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNI 495 (569)
Q Consensus 416 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 495 (569)
|+++.. +...... +.|+.|++++|.+. .+|........|+++.+++|... ..+..+.++.++..+.+.+|.+.. .
T Consensus 173 N~l~~l-~~~~~~~-~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~ 247 (394)
T COG4886 173 NDLSDL-PKLLSNL-SNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-L 247 (394)
T ss_pred chhhhh-hhhhhhh-hhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-c
Confidence 877632 2222222 37777777777776 45544444555777777777543 355556666777777777776653 2
Q ss_pred hhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCc
Q 047977 496 TRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPA 545 (569)
Q Consensus 496 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 545 (569)
+..++.+++++.|++++|.+....+ ++.+..++.|++++|.++...+.
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cchhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 4556667777777777777664422 66777777777777776654443
No 30
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.07 E-value=8.4e-11 Score=124.37 Aligned_cols=129 Identities=25% Similarity=0.264 Sum_probs=82.0
Q ss_pred CCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCc--cccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEE
Q 047977 20 SNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNS--LNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHL 97 (569)
Q Consensus 20 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 97 (569)
...|.+.+.++.+. ..+.. ..++.|++|-+.++. +.......|..++.|++||+++|.-....+..++.+.+||+|
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchh-hccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 45566666666555 22322 234567777777664 443444446677777777777766555666667777777777
Q ss_pred EcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCc
Q 047977 98 SLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQ 152 (569)
Q Consensus 98 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 152 (569)
+++++.+. .+|..+++++.|.+|++..+.....+ .++...+++||+|.+....
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccc
Confidence 77777777 67777777777777777766543233 3444557777777765543
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.07 E-value=3.6e-11 Score=105.56 Aligned_cols=132 Identities=18% Similarity=0.193 Sum_probs=82.7
Q ss_pred cCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCc
Q 047977 403 SRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLN 482 (569)
Q Consensus 403 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 482 (569)
.....|+++++++|.++ .+.+...-. |.++.|+++.|.+. .+ ..+..+++|+.||+++|.++ .....-..+-+.+
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~-Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLA-PKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK 355 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhc-cceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence 33455666666666665 333333333 37777777777764 22 23666777777777777776 3333334566677
Q ss_pred EEEccCCccccchhhhhcCCCCCcEEeCcCCcccccC-CcCcccCCCCCEEECCCCccee
Q 047977 483 RVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEI-SPDWGECRNLSNLQLDRNKISG 541 (569)
Q Consensus 483 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~n~~~~ 541 (569)
.|.+++|.+. ....++.+.+|..||+++|.+.... -..++++|.|+.|.+.+|++.+
T Consensus 356 tL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 356 TLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 7777777765 2344667777778888887765321 2347777888888888877763
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=1.4e-10 Score=97.76 Aligned_cols=129 Identities=22% Similarity=0.222 Sum_probs=36.6
Q ss_pred ccCCCCCCEEeCCCCcCcccCCcccc-CCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCC
Q 047977 16 IGTLSNLTFLDLNNNLFEGSIPSEMG-DLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSL 94 (569)
Q Consensus 16 ~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 94 (569)
+.++.+++.|+++++.|..+ +.++ .+.+|+.|++++|.+++. ..+..+++|++|++++|.+..+.......+++|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 34455667777777766632 2333 456677777777766633 235566667777777666665432111345666
Q ss_pred cEEEccccccccc-CCccccCCCCCCEEEcccCccccCC--chhhhhcCCCCcEEec
Q 047977 95 THLSLCYNELTLE-FPSFILTCRNLTYLDLSLNKLSGLI--PERLFTNLGKLEYLNL 148 (569)
Q Consensus 95 ~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l 148 (569)
++|++++|.+... ....+..+++|+.|++.+|+++..- -..++..+|+|+.||-
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 6666666666521 1234455666666666666654221 1123445566666554
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.5e-11 Score=112.13 Aligned_cols=210 Identities=17% Similarity=0.121 Sum_probs=133.3
Q ss_pred ccCCCCCcEEecccccccccCC-ccccCCCCCCEEEccCCccccc--cCcccccCCCCCEEEcccCcccccCCcc-ccCC
Q 047977 306 IGLLTKLQYLFLYRNHFSGPIP-SEIGKLTSLEKLDLSGNQLSGT--IPPTLWNLTNLLSLQLFFNNLSGTIPPE-IGSM 381 (569)
Q Consensus 306 ~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~ 381 (569)
-+++.+|+.+.+.++++..... .....|++++.|+++.|-+... +......+|+|+.|+++.|.+..-.... -..+
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 4567889999999888763221 3567799999999999877533 3345678899999999999876322211 2256
Q ss_pred CCCCEEEccCCccccc-CCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCcccc-ChhhhCCCCCcE
Q 047977 382 ASLVAFDVNTNQLHGE-LPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGEL-PYELCSGFALEE 459 (569)
Q Consensus 382 ~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~ 459 (569)
+.++.|.++.|.++.. +...+..+|+++.|.+.+|........... .+..|+.|+|++|.+.+.. ......++.|+.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~-i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTK-ILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhh-hhhHHhhccccCCcccccccccccccccchhh
Confidence 7899999999988742 334456788888888888842211111111 2227778888887765332 124455677777
Q ss_pred EEccCCcceee-CCcc-----ccCCCCCcEEEccCCccccc-hhhhhcCCCCCcEEeCcCCccc
Q 047977 460 LTVNGNNFTGS-LPAC-----MRNCSNLNRVRFDGNQFTGN-ITRAFGVHPRLDFIRLSGNHFI 516 (569)
Q Consensus 460 L~l~~~~~~~~-~~~~-----l~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~ 516 (569)
|.++.|++... .|.+ ...+++|++|+++.|++..- ....+..+++|+.|.+-.|.+.
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 77777776532 1222 34567777777777776421 1223445566666666666654
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.03 E-value=7e-12 Score=119.45 Aligned_cols=193 Identities=26% Similarity=0.417 Sum_probs=128.6
Q ss_pred CCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEcc
Q 047977 335 SLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVF 414 (569)
Q Consensus 335 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 414 (569)
--...+++.|++. .++..++.+-.|+.+.++.|.+. .++..+..+..|+.++++.|++. .+|..+.. --|+.+.++
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~-lpLkvli~s 151 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCD-LPLKVLIVS 151 (722)
T ss_pred chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhc-CcceeEEEe
Confidence 3345677777776 66667777777777777777766 66777777778888888888777 55544443 346777777
Q ss_pred CCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccc
Q 047977 415 TNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGN 494 (569)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 494 (569)
+|+++ ..|+..... +.|..|+.+.|.+- .+|..+..+.+|+.|.+..|.+. .+|..+.. -.|..||+++|+++ .
T Consensus 152 NNkl~-~lp~~ig~~-~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 152 NNKLT-SLPEEIGLL-PTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS-Y 225 (722)
T ss_pred cCccc-cCCcccccc-hhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-e
Confidence 77766 556666533 37777777777765 56666777777777777777776 56666663 33777777777776 5
Q ss_pred hhhhhcCCCCCcEEeCcCCcccccCCcC---cccCCCCCEEECCCCc
Q 047977 495 ITRAFGVHPRLDFIRLSGNHFIGEISPD---WGECRNLSNLQLDRNK 538 (569)
Q Consensus 495 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~---l~~~~~L~~L~l~~n~ 538 (569)
+|-.|..|+.|++|-|.+|++. ..|.. -+..+--++|++.-|+
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred cchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 6667777777777777777765 32322 2444555666666664
No 35
>PLN03150 hypothetical protein; Provisional
Probab=99.02 E-value=4.9e-10 Score=116.23 Aligned_cols=108 Identities=19% Similarity=0.418 Sum_probs=72.8
Q ss_pred CceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcC
Q 047977 433 LINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSG 512 (569)
Q Consensus 433 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 512 (569)
++.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|+.++.+++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 55667777777666666666677777777777777666666667777777777777777666676677777777777777
Q ss_pred CcccccCCcCcccC-CCCCEEECCCCcce
Q 047977 513 NHFIGEISPDWGEC-RNLSNLQLDRNKIS 540 (569)
Q Consensus 513 ~~~~~~~~~~l~~~-~~L~~L~l~~n~~~ 540 (569)
|.+.+.+|..++.. .++..+++.+|...
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccc
Confidence 77666666665542 35556666666533
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.00 E-value=6.7e-10 Score=110.22 Aligned_cols=200 Identities=31% Similarity=0.426 Sum_probs=155.2
Q ss_pred cEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCC-CCCEEEcccCcccccCCccccCCCCCCEEEccC
Q 047977 313 QYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLT-NLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNT 391 (569)
Q Consensus 313 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 391 (569)
..+....+.+... ...+..++.++.+++.++.++ .++....... +|+.+++++|.+. .++..+..++.|+.|+++.
T Consensus 96 ~~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 96 PSLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred ceeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 4677777776422 234555678999999999998 4444555553 8999999999987 4446788899999999999
Q ss_pred CcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeC
Q 047977 392 NQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSL 471 (569)
Q Consensus 392 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 471 (569)
|++. .++......+.|+.+.+++|++. .+|..... +..|+++.+++|+.. ..+..+..+.++..+.+.+|++. ..
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~-~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~ 247 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL-LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DL 247 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhh-hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ec
Confidence 9998 55555557899999999999988 44443322 226999999999643 45567778888999999999887 44
Q ss_pred CccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcC
Q 047977 472 PACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPD 522 (569)
Q Consensus 472 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 522 (569)
+..+..+++++.|++++|.++.... ++...++++|+++++.+....+..
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred cchhccccccceecccccccccccc--ccccCccCEEeccCccccccchhh
Confidence 6778888999999999999985444 889999999999999987555544
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.96 E-value=5.2e-10 Score=77.32 Aligned_cols=61 Identities=30% Similarity=0.450 Sum_probs=37.8
Q ss_pred CCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcC
Q 047977 503 PRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNEL 563 (569)
Q Consensus 503 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 563 (569)
|+|++|++++|++....+..|+.+++|+.|++++|.++...+++|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4566666666666544445566666666666666666666666666666666666666654
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.95 E-value=3.8e-10 Score=119.48 Aligned_cols=107 Identities=24% Similarity=0.250 Sum_probs=64.0
Q ss_pred CCCCEEeCCCCc--CcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEE
Q 047977 20 SNLTFLDLNNNL--FEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHL 97 (569)
Q Consensus 20 ~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 97 (569)
+.|++|-+.++. +..+..+.|..++.|++|++++|.-.+.+|..++.+-+||+|+++++.+... +..++.+.+|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~L-P~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHL-PSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcccc-chHHHHHHhhhee
Confidence 356666666664 3334444466666666666666655556666666666666666666666533 3455666666666
Q ss_pred EcccccccccCCccccCCCCCCEEEcccCc
Q 047977 98 SLCYNELTLEFPSFILTCRNLTYLDLSLNK 127 (569)
Q Consensus 98 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 127 (569)
++..+......+.....+++|++|.+....
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccc
Confidence 666665443444445556666666665543
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.91 E-value=3.1e-09 Score=110.25 Aligned_cols=108 Identities=27% Similarity=0.478 Sum_probs=78.5
Q ss_pred CcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCC
Q 047977 457 LEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDR 536 (569)
Q Consensus 457 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 536 (569)
++.|+|++|.+.+..|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 56777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CcceecCCcCccCC-CCCCeEeCcCCcCc
Q 047977 537 NKISGGIPAELGNL-TRLGVLSLDSNELT 564 (569)
Q Consensus 537 n~~~~~~~~~l~~l-~~L~~L~l~~n~~~ 564 (569)
|.+++.+|..+... .++..+++.+|+..
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccc
Confidence 77777777766543 45666777776643
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.91 E-value=1e-09 Score=75.87 Aligned_cols=59 Identities=25% Similarity=0.375 Sum_probs=32.8
Q ss_pred CCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCc
Q 047977 480 NLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNK 538 (569)
Q Consensus 480 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 538 (569)
+|++|++++|.+....+.+|..+++|++|++++|.+....+..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555554444555555555555555555554544555555555555555554
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.79 E-value=7.9e-10 Score=109.67 Aligned_cols=245 Identities=24% Similarity=0.235 Sum_probs=116.7
Q ss_pred CCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEE
Q 047977 285 WTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQ 364 (569)
Q Consensus 285 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 364 (569)
+..++.+.++.+.+.. ....+..+.++..+++.+|.+... ...+..+++|++|++++|.+++. ..+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhhe
Confidence 3445555555555543 112244556666666666666522 22245566666666666666533 2344455566666
Q ss_pred cccCcccccCCccccCCCCCCEEEccCCcccccCCcc-ccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcC
Q 047977 365 LFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPEN-ISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSF 443 (569)
Q Consensus 365 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 443 (569)
+.+|.+... ..+..++.|+.+++++|.+...-+ . ...+. +++.+.+.+|.+
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~-------------------------~l~~l~l~~n~i 198 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIEN-DELSELI-------------------------SLEELDLGGNSI 198 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhhhhhh-hhhhhcc-------------------------chHHHhccCCch
Confidence 666665422 123334555555555555542211 1 23344 444444444444
Q ss_pred ccccChhhhCCCCCcEEEccCCcceeeCCccccCCC--CCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCc
Q 047977 444 SGELPYELCSGFALEELTVNGNNFTGSLPACMRNCS--NLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISP 521 (569)
Q Consensus 444 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 521 (569)
... ..+..+..+..+++..|.++...+ +..+. .|+.+++++|++... +..+..++.+..|+++++.+... .
T Consensus 199 ~~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~--~ 271 (414)
T KOG0531|consen 199 REI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNL--E 271 (414)
T ss_pred hcc--cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccccc-cccccccccccccchhhcccccc--c
Confidence 211 112222233333455554442111 12122 256666666665522 13445566666666666665433 3
Q ss_pred CcccCCCCCEEECCCCccee---cCCcC-ccCCCCCCeEeCcCCcCcccCC
Q 047977 522 DWGECRNLSNLQLDRNKISG---GIPAE-LGNLTRLGVLSLDSNELTGKNS 568 (569)
Q Consensus 522 ~l~~~~~L~~L~l~~n~~~~---~~~~~-l~~l~~L~~L~l~~n~~~~~~~ 568 (569)
.+...+.+..+....+.+.. ..... ....+.++...+.+|++....+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 272 GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred cccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 34555555555555555441 11111 3445566666666666665543
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.64 E-value=2.4e-09 Score=106.20 Aligned_cols=197 Identities=24% Similarity=0.263 Sum_probs=122.9
Q ss_pred cccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCC
Q 047977 354 LWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSL 433 (569)
Q Consensus 354 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L 433 (569)
++.+++|..+++.+|.+... ...+..+++|+.+++++|.+... ..+..++.|+.|++.+|.++... .+..+ +.|
T Consensus 91 l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~~--~~~~l-~~L 164 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDIS--GLESL-KSL 164 (414)
T ss_pred cccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhcc--CCccc-hhh
Confidence 44445555555555554421 11144455566666666555532 23444455666666666555221 12122 277
Q ss_pred ceEEcccCcCccccC-hhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCC--CcEEeC
Q 047977 434 INVSFSNNSFSGELP-YELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPR--LDFIRL 510 (569)
Q Consensus 434 ~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~--L~~L~l 510 (569)
+.+++++|++.+.-+ . ...+.+++.+++.+|.+.. ...+..+..+..+++..|.++...+ +..+.. |+.+++
T Consensus 165 ~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l 239 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYL 239 (414)
T ss_pred hcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhc
Confidence 777777777653322 1 4677899999999998872 3344555566666888888874332 333343 899999
Q ss_pred cCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCc
Q 047977 511 SGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELT 564 (569)
Q Consensus 511 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 564 (569)
++|++. ..+.++..+..++.|++.+|++.. ...+...+.+..+....|++.
T Consensus 240 ~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~--~~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 240 SGNRIS-RSPEGLENLKNLPVLDLSSNRISN--LEGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred ccCccc-cccccccccccccccchhhccccc--cccccccchHHHhccCcchhc
Confidence 999987 334678888999999999999883 344666777777888877765
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=1.5e-09 Score=95.41 Aligned_cols=57 Identities=26% Similarity=0.289 Sum_probs=24.7
Q ss_pred CcEEEccCCcccc-CcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEcccc
Q 047977 46 LQYLSVYNNSLNG-AFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYN 102 (569)
Q Consensus 46 L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 102 (569)
|+++++++..++. .+...+..|.+|+.|.+.++.+.+.....++.-..|+.++++++
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence 4444554444431 12222344444444444444444433333444444444444444
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.45 E-value=2.2e-09 Score=105.68 Aligned_cols=125 Identities=26% Similarity=0.219 Sum_probs=60.8
Q ss_pred CceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcC
Q 047977 433 LINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSG 512 (569)
Q Consensus 433 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 512 (569)
|...+.+.|.+. .+..++.-++.++.|+|++|++.+. . .+..|+.|++|||++|.+....-.....+. |+.|.+++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh-H-HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 334444444443 3333444455555555555555522 1 445555556666655555432222222233 55555555
Q ss_pred CcccccCCcCcccCCCCCEEECCCCcceec-CCcCccCCCCCCeEeCcCCcC
Q 047977 513 NHFIGEISPDWGECRNLSNLQLDRNKISGG-IPAELGNLTRLGVLSLDSNEL 563 (569)
Q Consensus 513 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~ 563 (569)
|.++.. .++.++.+|+.||+++|-+.+. -..-+..+..|+.|++.|||+
T Consensus 242 N~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 242 NALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 555433 4455555566666665554421 111134455555666666654
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=2e-09 Score=94.73 Aligned_cols=181 Identities=20% Similarity=0.170 Sum_probs=106.7
Q ss_pred CCCcEEeccCCcccc-cCCcCCCCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceec--CCccccCCCCCCE
Q 047977 141 GKLEYLNLTDNQFQG-KLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQ--IPSSLGQLKNLQH 217 (569)
Q Consensus 141 ~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~ 217 (569)
+.|++++++...++. .....++.|.+|+.|.+.+.++.+.....++.-.+|+.++++.|.-... ..-.+..|..|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 347777777666542 2223456677777777777776655555566677777777776652211 1122456777777
Q ss_pred EEcccCCCCcCCC-cCC-cCCCCCCEEEcccccce---eccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEE
Q 047977 218 LDLRMNALNSTIP-PEL-GLCTNLSFLALAMNQLS---GGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQ 292 (569)
Q Consensus 218 L~l~~~~~~~~~~-~~~-~~~~~L~~l~l~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 292 (569)
|++++|....... ..+ .--++|+.++++++.-. .....-...+|+|.+|++++|-.........+..++-|+++.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 8887776543211 111 12356777777766421 111112346788888888887543333444466788888888
Q ss_pred ccCCcce-eeCCccccCCCCCcEEeccccc
Q 047977 293 IQNNSFM-GNIPPEIGLLTKLQYLFLYRNH 321 (569)
Q Consensus 293 l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~ 321 (569)
++.|... ......+...|+|.+|++.+|-
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 8887532 1111235667888888888764
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=1.1e-07 Score=83.89 Aligned_cols=183 Identities=20% Similarity=0.168 Sum_probs=79.8
Q ss_pred CCCCcEEeccCCccccc--CCcCCCCCCCCCEEEccCCccccCCCcCc-CCCCCCcEEEcccCcce-ecCCccccCCCCC
Q 047977 140 LGKLEYLNLTDNQFQGK--LSPNVSKLSNLTVLRLATNKFSGPIPGDI-GLMSNIQLVELFNNSFT-GQIPSSLGQLKNL 215 (569)
Q Consensus 140 ~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L 215 (569)
++.++.+++.+|.+..+ +...+.++|.|+.|+++.|.+..... .+ ....+|+++-+.+..+. ......+..+|.+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 34444455555444321 11223444555555555544432211 11 23344445444444332 0112234455666
Q ss_pred CEEEcccCCCCc--CCCcCC-cCCCCCCEEEcccccceecc--CccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcE
Q 047977 216 QHLDLRMNALNS--TIPPEL-GLCTNLSFLALAMNQLSGGL--PLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELES 290 (569)
Q Consensus 216 ~~L~l~~~~~~~--~~~~~~-~~~~~L~~l~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 290 (569)
++++++.|.... ...... ...+.++++....|....+. ..--.-+|++..+.+..|.+........+..+|.+.-
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 666666552110 000111 11134444544444332110 0111234566666666666554444444555566666
Q ss_pred EEccCCcceeeC-CccccCCCCCcEEeccccccc
Q 047977 291 LQIQNNSFMGNI-PPEIGLLTKLQYLFLYRNHFS 323 (569)
Q Consensus 291 L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~ 323 (569)
|++..+++.+.. ..++..++.|+.|.++++++.
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 666665554321 133455666666666666554
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=6.2e-08 Score=85.52 Aligned_cols=228 Identities=17% Similarity=0.121 Sum_probs=133.1
Q ss_pred CCCEEEccCCccccccC-ccc-ccCCCCCEEEcccCccccc--CCccccCCCCCCEEEccCCcccccCCccccCCCCCCE
Q 047977 335 SLEKLDLSGNQLSGTIP-PTL-WNLTNLLSLQLFFNNLSGT--IPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNK 410 (569)
Q Consensus 335 ~L~~L~l~~~~~~~~~~-~~~-~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 410 (569)
.++.+.+.++.+..... ..| ..++.++++++.+|.++.. +...+.++|.|+.|+++.|.+...+...-....+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 44455555555542211 111 2456677777777776532 2234456777777777777776433222134567777
Q ss_pred EEccCCcccccCCchhhccCCCCceEEcccCcCccc--cChhh-hCCCCCcEEEccCCccee--eCCccccCCCCCcEEE
Q 047977 411 FSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGE--LPYEL-CSGFALEELTVNGNNFTG--SLPACMRNCSNLNRVR 485 (569)
Q Consensus 411 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~-~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~ 485 (569)
+-+.+..+.......+....|.++.|+++.|.+... ..... ..-+.+++|+..+|.+.. ..-.--.-+|++..+.
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~ 205 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF 205 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence 777777665544444433334777777777732210 01111 122356666666664431 0011124568899999
Q ss_pred ccCCccccc-hhhhhcCCCCCcEEeCcCCccccc-CCcCcccCCCCCEEECCCCcceecC----CcC--ccCCCCCCeEe
Q 047977 486 FDGNQFTGN-ITRAFGVHPRLDFIRLSGNHFIGE-ISPDWGECRNLSNLQLDRNKISGGI----PAE--LGNLTRLGVLS 557 (569)
Q Consensus 486 l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~----~~~--l~~l~~L~~L~ 557 (569)
+..|++... ....+..+|.+..|.++.+.+.+- ....+..+++|..|.++.+++.... +.. ++++++++.|+
T Consensus 206 v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 206 VCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred eecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 999988543 345567788888999999987522 1234888999999999999887422 111 36788888776
Q ss_pred CcCCcCc
Q 047977 558 LDSNELT 564 (569)
Q Consensus 558 l~~n~~~ 564 (569)
=+ +++
T Consensus 286 Gs--kIs 290 (418)
T KOG2982|consen 286 GS--KIS 290 (418)
T ss_pred Cc--ccc
Confidence 33 544
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.31 E-value=4.4e-08 Score=96.77 Aligned_cols=175 Identities=18% Similarity=0.181 Sum_probs=121.5
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCc--Cc-------cccChhh
Q 047977 381 MASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNS--FS-------GELPYEL 451 (569)
Q Consensus 381 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~-------~~~~~~~ 451 (569)
...++.+....-.-++ |-.+..+.+|+.|.+.+|.+.. ...+..+...|+.|.+.+-- +. +.+..+.
T Consensus 86 t~~lkl~~~pa~~pt~--pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~ 161 (1096)
T KOG1859|consen 86 TKVLKLLPSPARDPTE--PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP 161 (1096)
T ss_pred heeeeecccCCCCCCC--CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch
Confidence 3344444444433332 4456678899999999988763 12222233355555444321 10 1111111
Q ss_pred hCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCE
Q 047977 452 CSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSN 531 (569)
Q Consensus 452 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 531 (569)
....|...+.+.|.+. .+...++-++.|+.|+|++|++.... .+..++.|++|||++|.+....--...++. |+.
T Consensus 162 -~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~ 236 (1096)
T KOG1859|consen 162 -VWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQL 236 (1096)
T ss_pred -hhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-hee
Confidence 1135777788889888 67778888999999999999998544 688999999999999998744333456666 999
Q ss_pred EECCCCcceecCCcCccCCCCCCeEeCcCCcCccc
Q 047977 532 LQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGK 566 (569)
Q Consensus 532 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 566 (569)
|++++|.++ ...++.++.+|+.||+++|=+++.
T Consensus 237 L~lrnN~l~--tL~gie~LksL~~LDlsyNll~~h 269 (1096)
T KOG1859|consen 237 LNLRNNALT--TLRGIENLKSLYGLDLSYNLLSEH 269 (1096)
T ss_pred eeecccHHH--hhhhHHhhhhhhccchhHhhhhcc
Confidence 999999999 456789999999999999988775
No 49
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.26 E-value=1.2e-08 Score=94.16 Aligned_cols=84 Identities=23% Similarity=0.126 Sum_probs=38.8
Q ss_pred CCcEEEccccccccc--CCccccCCCCCCEEEcccCc-cccCCchhhhhcCCCCcEEeccCCc-ccccCCc-CCCCCCCC
Q 047977 93 SLTHLSLCYNELTLE--FPSFILTCRNLTYLDLSLNK-LSGLIPERLFTNLGKLEYLNLTDNQ-FQGKLSP-NVSKLSNL 167 (569)
Q Consensus 93 ~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~-~l~~~~~L 167 (569)
.|+.|.+.++.-... +-.....+|++++|.+.++. +++..-..+...+++++++++..|. ++....+ ....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 455666655543311 11223455666666665554 3322233334455666666665532 2211111 12345566
Q ss_pred CEEEccCCc
Q 047977 168 TVLRLATNK 176 (569)
Q Consensus 168 ~~L~l~~~~ 176 (569)
+++++++|.
T Consensus 219 ~~lNlSwc~ 227 (483)
T KOG4341|consen 219 KYLNLSWCP 227 (483)
T ss_pred HHhhhccCc
Confidence 666666653
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.25 E-value=1.1e-07 Score=82.78 Aligned_cols=209 Identities=17% Similarity=0.121 Sum_probs=123.0
Q ss_pred CCCCCCEEeCCCCcCcccCCcc----ccCCCCCcEEEccCCccc---c-------CcchhccCCCCCCEEECCCCCCCCC
Q 047977 18 TLSNLTFLDLNNNLFEGSIPSE----MGDLSELQYLSVYNNSLN---G-------AFPFQLSNLRKVRYLDLGGNFLETP 83 (569)
Q Consensus 18 ~~~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~~---~-------~~~~~l~~l~~L~~L~l~~~~~~~~ 83 (569)
.+..+..+++|+|.+......+ +.+-.+|+..+++.--.. . .+..++..||+|+.+++|.|.+...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 3567777888888776433333 344567777777653221 1 1233466778888888888766543
Q ss_pred CCc----cCCCCCCCcEEEcccccccccCC-------------ccccCCCCCCEEEcccCccccC---CchhhhhcCCCC
Q 047977 84 DWS----KFSNMPSLTHLSLCYNELTLEFP-------------SFILTCRNLTYLDLSLNKLSGL---IPERLFTNLGKL 143 (569)
Q Consensus 84 ~~~----~~~~~~~L~~L~l~~~~~~~~~~-------------~~l~~l~~L~~L~l~~~~~~~~---~~~~~~~~~~~L 143 (569)
.+. .++.-+.|.||.+++|.+.-... .....-|.|+++...+|++... .....+..-..|
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 322 24556778888888887651111 1123457888888888876421 112223344577
Q ss_pred cEEeccCCcccccCC-----cCCCCCCCCCEEEccCCccccCCCc----CcCCCCCCcEEEcccCcceecCCcc----c-
Q 047977 144 EYLNLTDNQFQGKLS-----PNVSKLSNLTVLRLATNKFSGPIPG----DIGLMSNIQLVELFNNSFTGQIPSS----L- 209 (569)
Q Consensus 144 ~~L~l~~~~~~~~~~-----~~l~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~----l- 209 (569)
+++.+..|.+..... ..+..+.+|+.|++..|.++..... .+...+.|+.|.+..|-+....... +
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~ 267 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN 267 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence 888887777642211 2335677888888888776543322 2345566788888887665322111 1
Q ss_pred -cCCCCCCEEEcccCCCC
Q 047977 210 -GQLKNLQHLDLRMNALN 226 (569)
Q Consensus 210 -~~l~~L~~L~l~~~~~~ 226 (569)
...|+|..|....|.+.
T Consensus 268 e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 268 EKFVPNLMPLPGDYNERR 285 (388)
T ss_pred hhcCCCccccccchhhhc
Confidence 13567777777776543
No 51
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.23 E-value=3.3e-06 Score=69.01 Aligned_cols=127 Identities=22% Similarity=0.224 Sum_probs=64.7
Q ss_pred cCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCC
Q 047977 11 PIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSN 90 (569)
Q Consensus 11 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 90 (569)
+...+|..+++|+.+.+.. .+..+...+|.++++|+.+.+.++ +......+|.+++.++.+.+.+ .+.......|..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 4467788888888888875 455577777888888888888764 5544455677777788888865 455555566777
Q ss_pred CCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCc
Q 047977 91 MPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLE 144 (569)
Q Consensus 91 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 144 (569)
+++|+.+.+..+ +.......+..+ +|+.+.+.. .+. .++...|.++++|+
T Consensus 80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKLK 129 (129)
T ss_dssp -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG------
T ss_pred cccccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccCC
Confidence 777777777654 433444456665 777777665 222 45556666666653
No 52
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.13 E-value=2.8e-08 Score=91.83 Aligned_cols=134 Identities=17% Similarity=0.179 Sum_probs=62.5
Q ss_pred CCCCCEEEccCCcc-cccCCchhhccCCCCceEEcccCc-CccccChhhhC-CCCCcEEEccCCcceee--CCccccCCC
Q 047977 405 LVNLNKFSVFTNNF-SGSIPGDFGKFSPSLINVSFSNNS-FSGELPYELCS-GFALEELTVNGNNFTGS--LPACMRNCS 479 (569)
Q Consensus 405 l~~L~~l~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~-~~~L~~L~l~~~~~~~~--~~~~l~~~~ 479 (569)
+..|+.+..+++.. +......+..-.++|+.+-++.|+ +++.-...+.. ++.|+.+++.+|..... +..--.+|+
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 44445555544422 111222333333456666666654 33222222322 45666666666643311 111123566
Q ss_pred CCcEEEccCCcccc-ch----hhhhcCCCCCcEEeCcCCccc-ccCCcCcccCCCCCEEECCCCc
Q 047977 480 NLNRVRFDGNQFTG-NI----TRAFGVHPRLDFIRLSGNHFI-GEISPDWGECRNLSNLQLDRNK 538 (569)
Q Consensus 480 ~L~~L~l~~~~~~~-~~----~~~l~~l~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~n~ 538 (569)
.|+.+.+++|.... .. ...-..+..|+.+-+.+|+.+ +..-+-+..+++|+.+++.+|+
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 66666666665421 11 111123456666666666532 2223335666666666666664
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.12 E-value=1.6e-05 Score=75.98 Aligned_cols=54 Identities=13% Similarity=0.216 Sum_probs=23.1
Q ss_pred CCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccC
Q 047977 309 LTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFN 368 (569)
Q Consensus 309 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 368 (569)
++.++.|++++|.++ .+| .+ -.+|++|.+++|.-....+..+ .++|+.|++++|
T Consensus 51 ~~~l~~L~Is~c~L~-sLP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCc-ccC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 345555555555444 333 11 1245555555543322333222 134444444444
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.07 E-value=1.6e-05 Score=75.88 Aligned_cols=136 Identities=15% Similarity=0.168 Sum_probs=77.1
Q ss_pred cccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCC
Q 047977 354 LWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSL 433 (569)
Q Consensus 354 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L 433 (569)
+..+..++.|++++|.++ .++ .-.++|+.|.+++|.....+|..+. .+|+.|.+++|..- ..+++.|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP---~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L-------~sLP~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP---VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEI-------SGLPESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC---CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccc-------ccccccc
Confidence 445688888888888766 334 1234688888887655545665442 57778888777211 1234567
Q ss_pred ceEEcccCcCc--cccChhhhCCCCCcEEEccCCcce--eeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEe
Q 047977 434 INVSFSNNSFS--GELPYELCSGFALEELTVNGNNFT--GSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIR 509 (569)
Q Consensus 434 ~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 509 (569)
+.|+++.+... +.+| ++|+.|.+.++... ...+..+. ++|++|++++|... ..|..+ ..+|++|+
T Consensus 115 e~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~LP--sSLk~L~Is~c~~i-~LP~~L--P~SLk~L~ 183 (426)
T PRK15386 115 RSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNLIS--PSLKTLSLTGCSNI-ILPEKL--PESLQSIT 183 (426)
T ss_pred ceEEeCCCCCcccccCc------chHhheeccccccccccccccccC--CcccEEEecCCCcc-cCcccc--cccCcEEE
Confidence 77777654432 1122 35666666443211 01111111 56777777777655 233332 35777777
Q ss_pred CcCC
Q 047977 510 LSGN 513 (569)
Q Consensus 510 l~~~ 513 (569)
++.+
T Consensus 184 ls~n 187 (426)
T PRK15386 184 LHIE 187 (426)
T ss_pred eccc
Confidence 7665
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.04 E-value=2e-06 Score=75.27 Aligned_cols=235 Identities=22% Similarity=0.187 Sum_probs=149.2
Q ss_pred ccCCCCCCEEEccCCccccccCccc----ccCCCCCEEEcccCccc---cc-------CCccccCCCCCCEEEccCCccc
Q 047977 330 IGKLTSLEKLDLSGNQLSGTIPPTL----WNLTNLLSLQLFFNNLS---GT-------IPPEIGSMASLVAFDVNTNQLH 395 (569)
Q Consensus 330 l~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~---~~-------~~~~~~~~~~L~~L~l~~~~~~ 395 (569)
+.....+.++++++|.+......++ .+-.+|+..++++--.. .. ....+..||.|+.+++++|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 3446788899999998875544444 34467777777653211 11 2234567899999999998776
Q ss_pred ccCCc----cccCCCCCCEEEccCCcccccCCchhh------------ccCCCCceEEcccCcCccccC----hhhhCCC
Q 047977 396 GELPE----NISRLVNLNKFSVFTNNFSGSIPGDFG------------KFSPSLINVSFSNNSFSGELP----YELCSGF 455 (569)
Q Consensus 396 ~~~~~----~~~~l~~L~~l~l~~~~~~~~~~~~~~------------~~~~~L~~L~l~~~~~~~~~~----~~~~~~~ 455 (569)
...|. .+..-+.|+.|.+.+|.+-...-..+. .-.|.|++..+..|++...-. ..+..-.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 54443 456678888899988876533222111 123588888888888742111 1222225
Q ss_pred CCcEEEccCCcceee-----CCccccCCCCCcEEEccCCcccc----chhhhhcCCCCCcEEeCcCCcccccCCcCc---
Q 047977 456 ALEELTVNGNNFTGS-----LPACMRNCSNLNRVRFDGNQFTG----NITRAFGVHPRLDFIRLSGNHFIGEISPDW--- 523 (569)
Q Consensus 456 ~L~~L~l~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l--- 523 (569)
.|+++.+..|.|... ....+..+.+|+.|||..|-++. .+..++...+.|++|.+.+|-++......+
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~ 265 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR 265 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence 788888888876532 11234677889999998887754 233445566778889888887764433321
Q ss_pred ---ccCCCCCEEECCCCcceecC------CcCc-cCCCCCCeEeCcCCcCc
Q 047977 524 ---GECRNLSNLQLDRNKISGGI------PAEL-GNLTRLGVLSLDSNELT 564 (569)
Q Consensus 524 ---~~~~~L~~L~l~~n~~~~~~------~~~l-~~l~~L~~L~l~~n~~~ 564 (569)
...|+|..|...+|.+.+.. +... ..+|-|..|.++||+|+
T Consensus 266 f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 266 FNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 23678888888888766321 1111 34777777888888875
No 56
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.95 E-value=2e-05 Score=64.31 Aligned_cols=125 Identities=19% Similarity=0.228 Sum_probs=59.1
Q ss_pred CCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEcccccccccCCccccCC
Q 047977 36 IPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTC 115 (569)
Q Consensus 36 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 115 (569)
...+|.++++|+.+.+.. .+......+|.++++|+.+++.++ +..+...+|..+++++++.+.+ .+.......+..+
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 346677777888888764 355455566777777888887764 6666666677777777777765 3332334455666
Q ss_pred CCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCC
Q 047977 116 RNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNL 167 (569)
Q Consensus 116 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 167 (569)
++|+.+++..+ +. .++...|.++ .++.+.+.. .+.......|.++++|
T Consensus 81 ~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 81 TNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTECEEEETTT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccccCcc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 77777776554 33 4444555665 666666654 2332333445555444
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.88 E-value=2.2e-05 Score=65.85 Aligned_cols=105 Identities=17% Similarity=0.164 Sum_probs=63.4
Q ss_pred CCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccch-hhhhcCCCCCcEEeC
Q 047977 432 SLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNI-TRAFGVHPRLDFIRL 510 (569)
Q Consensus 432 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l 510 (569)
....+++++|++... ..+..++.|.+|.+.+|+|+...|.--.-+++|+.|.+.+|++.... ...+..||+|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 555677777766422 23555667777777777777555544445667777777777664321 233556777777777
Q ss_pred cCCcccccCC---cCcccCCCCCEEECCCCc
Q 047977 511 SGNHFIGEIS---PDWGECRNLSNLQLDRNK 538 (569)
Q Consensus 511 ~~~~~~~~~~---~~l~~~~~L~~L~l~~n~ 538 (569)
-+|++...-- -.+..+|+|+.||+++=.
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 7777652210 115566777777776543
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.88 E-value=5.1e-07 Score=70.31 Aligned_cols=130 Identities=16% Similarity=0.222 Sum_probs=76.2
Q ss_pred CCceEEcccCcCcc--ccChhhhCCCCCcEEEccCCcceeeCCccc-cCCCCCcEEEccCCccccchhhhhcCCCCCcEE
Q 047977 432 SLINVSFSNNSFSG--ELPYELCSGFALEELTVNGNNFTGSLPACM-RNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFI 508 (569)
Q Consensus 432 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 508 (569)
.+..++|++|++.. ..+..+.+...|+..++++|.+. ..|+.| ..++..+.|++++|.+++ .|+.+..+|.|+.|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhc
Confidence 44556667776541 12234455556666777777776 455444 345577777777777773 45457777777777
Q ss_pred eCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCc-cCCCCCCeEeCcCCcCccc
Q 047977 509 RLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAEL-GNLTRLGVLSLDSNELTGK 566 (569)
Q Consensus 509 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~~~~~ 566 (569)
+++.|++. ..|..+..+.++-.|+..+|.+-.+.-+.| ...+.| .+++++|+.++
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al--~~lgnepl~~~ 161 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPAL--IKLGNEPLGDE 161 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHH--HHhcCCccccc
Confidence 77777766 445555557777777777776653222211 122222 33366666554
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.86 E-value=1.9e-05 Score=49.57 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=15.9
Q ss_pred CCcEEEccCCccccchhhhhcCCCCCcEEeCcCCccc
Q 047977 480 NLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFI 516 (569)
Q Consensus 480 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 516 (569)
+|++|++++|.++. ++..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 34455555555442 2333445555555555555444
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.81 E-value=2e-05 Score=49.49 Aligned_cols=37 Identities=32% Similarity=0.545 Sum_probs=22.8
Q ss_pred CCcEEEccCCcceeeCCccccCCCCCcEEEccCCcccc
Q 047977 456 ALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTG 493 (569)
Q Consensus 456 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 493 (569)
+|++|++++|+++ .++..++++++|+.|++++|+++.
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 5666666666666 455556667777777777776663
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.79 E-value=7.3e-06 Score=85.19 Aligned_cols=151 Identities=19% Similarity=0.205 Sum_probs=101.9
Q ss_pred CCCCCEEEccCCc-ccccCCchhhccCCCCceEEcccCcCcccc-ChhhhCCCCCcEEEccCCcceeeCCccccCCCCCc
Q 047977 405 LVNLNKFSVFTNN-FSGSIPGDFGKFSPSLINVSFSNNSFSGEL-PYELCSGFALEELTVNGNNFTGSLPACMRNCSNLN 482 (569)
Q Consensus 405 l~~L~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 482 (569)
-.+|+.|++++.. ++..++...+.+.|+|++|.+.+-.+.... ......+++|..||+++++++. + .+++.+++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHH
Confidence 3678888887753 345566777777779999999887764332 2334557889999999988872 2 6788888888
Q ss_pred EEEccCCcccc-chhhhhcCCCCCcEEeCcCCcccccC------CcCcccCCCCCEEECCCCcceecCCcCc-cCCCCCC
Q 047977 483 RVRFDGNQFTG-NITRAFGVHPRLDFIRLSGNHFIGEI------SPDWGECRNLSNLQLDRNKISGGIPAEL-GNLTRLG 554 (569)
Q Consensus 483 ~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~------~~~l~~~~~L~~L~l~~n~~~~~~~~~l-~~l~~L~ 554 (569)
.|.+.+=.+.. .....+-++++|+.||+|+-+..... -+.-..+|.|+.||.+++.+.....+.+ ..-++|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 88888766653 33344667899999999887643221 1123457888888888887775443333 3445555
Q ss_pred eEe
Q 047977 555 VLS 557 (569)
Q Consensus 555 ~L~ 557 (569)
.+.
T Consensus 279 ~i~ 281 (699)
T KOG3665|consen 279 QIA 281 (699)
T ss_pred hhh
Confidence 543
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.68 E-value=2.5e-05 Score=81.31 Aligned_cols=154 Identities=18% Similarity=0.202 Sum_probs=104.0
Q ss_pred CCCCEEEccCCcccc-cCCccc-cCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcE
Q 047977 382 ASLVAFDVNTNQLHG-ELPENI-SRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEE 459 (569)
Q Consensus 382 ~~L~~L~l~~~~~~~-~~~~~~-~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 459 (569)
.+|+.|++++..... .++..+ ..+|+|+.|.+.+-.+....-..++.--|+|..||++++.++.. .+++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 578999998864431 222222 34799999999887665433233333334999999999998743 67888999999
Q ss_pred EEccCCccee-eCCccccCCCCCcEEEccCCccccch--h----hhhcCCCCCcEEeCcCCcccccCCcC-cccCCCCCE
Q 047977 460 LTVNGNNFTG-SLPACMRNCSNLNRVRFDGNQFTGNI--T----RAFGVHPRLDFIRLSGNHFIGEISPD-WGECRNLSN 531 (569)
Q Consensus 460 L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~--~----~~l~~l~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~ 531 (569)
|.+.+=.+.. .....+-++++|+.||+|..+..... . +.-..+|.|+.||.|+..+....-+. +..-|+|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 9998766653 12234667899999999987654321 1 22346899999999999886554444 445567777
Q ss_pred EECCCC
Q 047977 532 LQLDRN 537 (569)
Q Consensus 532 L~l~~n 537 (569)
+.+-++
T Consensus 280 i~~~~~ 285 (699)
T KOG3665|consen 280 IAALDC 285 (699)
T ss_pred hhhhhh
Confidence 765543
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.65 E-value=8.2e-05 Score=62.52 Aligned_cols=124 Identities=14% Similarity=0.100 Sum_probs=86.8
Q ss_pred ceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCC
Q 047977 434 INVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGN 513 (569)
Q Consensus 434 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 513 (569)
+.+++++.++. .+...-....+...+|+++|.+. ....|..++.|..|.++.|.++...|.--..+|.|+.|.+.+|
T Consensus 22 ~e~~LR~lkip-~ienlg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 22 RELDLRGLKIP-VIENLGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccccccccccc-chhhccccccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 34555555543 11111122356788899999886 2345788889999999999998877776667889999999999
Q ss_pred cccccC-CcCcccCCCCCEEECCCCcceec---CCcCccCCCCCCeEeCcC
Q 047977 514 HFIGEI-SPDWGECRNLSNLQLDRNKISGG---IPAELGNLTRLGVLSLDS 560 (569)
Q Consensus 514 ~~~~~~-~~~l~~~~~L~~L~l~~n~~~~~---~~~~l~~l~~L~~L~l~~ 560 (569)
.+.... ...++.||.|+.|.+-+|+++.. -...+-.+|+|+.||.++
T Consensus 99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 876332 12378899999999999988842 122345688898888764
No 64
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.64 E-value=3.1e-06 Score=66.04 Aligned_cols=84 Identities=25% Similarity=0.311 Sum_probs=35.0
Q ss_pred CCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEE
Q 047977 405 LVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRV 484 (569)
Q Consensus 405 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 484 (569)
...|+.+++++|.+. .+|..|...+|..+.+++++|.+. .+|..+..++.|+.|+++.|.+. ..|..+..+.++..|
T Consensus 52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 344444455555444 333333333334444444444443 33444444444444444444444 233333333444444
Q ss_pred EccCCcc
Q 047977 485 RFDGNQF 491 (569)
Q Consensus 485 ~l~~~~~ 491 (569)
+..+|..
T Consensus 129 ds~~na~ 135 (177)
T KOG4579|consen 129 DSPENAR 135 (177)
T ss_pred cCCCCcc
Confidence 4444433
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.47 E-value=8.9e-06 Score=83.48 Aligned_cols=236 Identities=19% Similarity=0.134 Sum_probs=110.6
Q ss_pred CCCCCCEEECCCCCCCCC-C-CccCCCCCCCcEEEcccc-cccccC----CccccCCCCCCEEEcccCc-cccCCchhhh
Q 047977 66 NLRKVRYLDLGGNFLETP-D-WSKFSNMPSLTHLSLCYN-ELTLEF----PSFILTCRNLTYLDLSLNK-LSGLIPERLF 137 (569)
Q Consensus 66 ~l~~L~~L~l~~~~~~~~-~-~~~~~~~~~L~~L~l~~~-~~~~~~----~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~ 137 (569)
.++.|+.+.+.++.-... . ......++.|+.|+++++ ...... ......+++|+.++++.+. +++.....+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 356666666665533222 1 123345667777776652 111011 1223345677777777766 5544444444
Q ss_pred hcCCCCcEEeccCCc-cccc-CCcCCCCCCCCCEEEccCCccccC--CCcCcCCCCCCcEEEcccCcceecCCccccCCC
Q 047977 138 TNLGKLEYLNLTDNQ-FQGK-LSPNVSKLSNLTVLRLATNKFSGP--IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLK 213 (569)
Q Consensus 138 ~~~~~L~~L~l~~~~-~~~~-~~~~l~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 213 (569)
..+++|++|.+..|. ++.. +......+++|++|++++|..... .......+++++.+.+.... .++
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~----------~c~ 335 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN----------GCP 335 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC----------CCc
Confidence 457777777766555 3322 112234566777777776654211 11112345555554433222 133
Q ss_pred CCCEEEcccCCCC---cCCCcCCcCCCCCCEEEcccccceecc-CccCcCCCCCCEEeCcCCcCccccCccccCCCCCCc
Q 047977 214 NLQHLDLRMNALN---STIPPELGLCTNLSFLALAMNQLSGGL-PLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELE 289 (569)
Q Consensus 214 ~L~~L~l~~~~~~---~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 289 (569)
.++.+.+..+... .........+++++.+.+..+...+.. ...+.+++.|+ ..+..+ ......++
T Consensus 336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~----------~~~~~~l~ 404 (482)
T KOG1947|consen 336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR----------LCRSDSLR 404 (482)
T ss_pred cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH----------hccCCccc
Confidence 4444444433221 122223456666777666666533322 23344555552 211111 11122266
Q ss_pred EEEccCCcceeeCC-ccccC-CCCCcEEecccccc
Q 047977 290 SLQIQNNSFMGNIP-PEIGL-LTKLQYLFLYRNHF 322 (569)
Q Consensus 290 ~L~l~~~~~~~~~~-~~~~~-~~~L~~L~l~~~~~ 322 (569)
.+++..+....... ..... +..++.+.+.++..
T Consensus 405 ~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 405 VLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred eEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 77777665432211 11111 44556666666543
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=1.3e-05 Score=70.44 Aligned_cols=98 Identities=17% Similarity=0.155 Sum_probs=72.5
Q ss_pred CCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchh-hhhcCCCCCcEEeC
Q 047977 432 SLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNIT-RAFGVHPRLDFIRL 510 (569)
Q Consensus 432 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l 510 (569)
+.+.|++++|.+.|. ....+++.|+.|.|+-|+|+. ...+..|++|++|+|..|.+..... +-+.++|+|+.|-|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 677888888888642 234567888999999898873 3457888899999998888865332 34778889999888
Q ss_pred cCCcccccCCcC-----cccCCCCCEEE
Q 047977 511 SGNHFIGEISPD-----WGECRNLSNLQ 533 (569)
Q Consensus 511 ~~~~~~~~~~~~-----l~~~~~L~~L~ 533 (569)
..|+.-+..+.. +..+|+|+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 888876554433 67788888876
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.34 E-value=2.9e-05 Score=79.64 Aligned_cols=187 Identities=18% Similarity=0.110 Sum_probs=90.3
Q ss_pred CCCCCcEEeccccccccc--CCccccCCCCCCEEEccCC-cccccc----CcccccCCCCCEEEcccCc-ccccCCcccc
Q 047977 308 LLTKLQYLFLYRNHFSGP--IPSEIGKLTSLEKLDLSGN-QLSGTI----PPTLWNLTNLLSLQLFFNN-LSGTIPPEIG 379 (569)
Q Consensus 308 ~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~-~~~~~~----~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~ 379 (569)
.++.|+.+.+.++.-... .......++.|+.|+++++ ...... ......+++|+.++++.+. ++......+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 367788888877743322 2234456778888888763 111111 1223345677777777766 3322222222
Q ss_pred -CCCCCCEEEccCCc-cccc-CCccccCCCCCCEEEccCCccccc--CCchhhccCCCCceEEcccCcCccccChhhhCC
Q 047977 380 -SMASLVAFDVNTNQ-LHGE-LPENISRLVNLNKFSVFTNNFSGS--IPGDFGKFSPSLINVSFSNNSFSGELPYELCSG 454 (569)
Q Consensus 380 -~~~~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 454 (569)
.|++|+.+.+.+|. ++.. +......++.|+.+++++|..... +...... .++++.|.+.... .+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~-c~~l~~l~~~~~~----------~c 334 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN-CPNLRELKLLSLN----------GC 334 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh-CcchhhhhhhhcC----------CC
Confidence 26677777766665 3322 122334456677776666643211 1111112 2244443332221 13
Q ss_pred CCCcEEEccCCcce---eeCCccccCCCCCcEEEccCCccccch-hhhhcCCCCC
Q 047977 455 FALEELTVNGNNFT---GSLPACMRNCSNLNRVRFDGNQFTGNI-TRAFGVHPRL 505 (569)
Q Consensus 455 ~~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L 505 (569)
..++.+.+.++.-. .........++.++.+.+.++...... ...+..++.|
T Consensus 335 ~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 335 PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 33444444443221 112233466777777777777643322 2344455544
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.06 E-value=0.0003 Score=61.93 Aligned_cols=108 Identities=21% Similarity=0.282 Sum_probs=59.9
Q ss_pred CCCCCCEEEccCCcccccCCchhhccCCCCceEEcccC--cCccccChhhhCCCCCcEEEccCCccee-eCCccccCCCC
Q 047977 404 RLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNN--SFSGELPYELCSGFALEELTVNGNNFTG-SLPACMRNCSN 480 (569)
Q Consensus 404 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~ 480 (569)
.+..++.+++.+..++.. ..+..++ +|++|.++.| +..+.+......+++|++|++++|++.. .....+..+.+
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp-~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLP-KLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcc-hhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 344444444555444422 2333343 6666666666 4444444444455777777777777652 11123456666
Q ss_pred CcEEEccCCcccc---chhhhhcCCCCCcEEeCcCCc
Q 047977 481 LNRVRFDGNQFTG---NITRAFGVHPRLDFIRLSGNH 514 (569)
Q Consensus 481 L~~L~l~~~~~~~---~~~~~l~~l~~L~~L~l~~~~ 514 (569)
|..|++..|+.+. .-...|..+++|++||-....
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 7777777776543 233446667777777665543
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=3.7e-05 Score=67.79 Aligned_cols=100 Identities=18% Similarity=0.118 Sum_probs=75.2
Q ss_pred CCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCC-cCcccCCCCCEE
Q 047977 454 GFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEIS-PDWGECRNLSNL 532 (569)
Q Consensus 454 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L 532 (569)
+.+.+.|+..||.+.+. .....++.|+.|.|+-|+++...| +..|+.|++|+|..|.|.+.-. .-+.++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45678889999988732 234678999999999999985544 7789999999999998864321 237889999999
Q ss_pred ECCCCcceecCCcC-----ccCCCCCCeEe
Q 047977 533 QLDRNKISGGIPAE-----LGNLTRLGVLS 557 (569)
Q Consensus 533 ~l~~n~~~~~~~~~-----l~~l~~L~~L~ 557 (569)
-|..|.-.+..+.. +.-+|+|++||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99998877654443 34578888776
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.87 E-value=0.00047 Score=60.73 Aligned_cols=124 Identities=20% Similarity=0.169 Sum_probs=81.0
Q ss_pred CCceEEcccCcCc-cccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCC--ccccchhhhhcCCCCCcEE
Q 047977 432 SLINVSFSNNSFS-GELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGN--QFTGNITRAFGVHPRLDFI 508 (569)
Q Consensus 432 ~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~--~~~~~~~~~l~~l~~L~~L 508 (569)
..+.+.+..|... +.+......+..|+.|.+.++.++. ...+..+++|+.|.++.| .+....+.....+|+|++|
T Consensus 19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l 96 (260)
T KOG2739|consen 19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVL 96 (260)
T ss_pred hhhhhhcchhhhcCCCcccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEE
Confidence 3444555544322 1233334456678888888888872 345677889999999999 5555444445567999999
Q ss_pred eCcCCccccc-CCcCcccCCCCCEEECCCCcceecCC---cCccCCCCCCeEe
Q 047977 509 RLSGNHFIGE-ISPDWGECRNLSNLQLDRNKISGGIP---AELGNLTRLGVLS 557 (569)
Q Consensus 509 ~l~~~~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~ 557 (569)
++++|++... ....++.+.+|..|++.+|..+...- ..+.-+++|++|+
T Consensus 97 ~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 97 NLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred eecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 9999998631 12336778889999999998774110 1123356666665
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.09 E-value=0.0023 Score=54.16 Aligned_cols=79 Identities=18% Similarity=0.164 Sum_probs=32.1
Q ss_pred CcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccC-CcCc-ccCCCCCEEECCCC-cceecCCcCccCCCCCCeEe
Q 047977 481 LNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEI-SPDW-GECRNLSNLQLDRN-KISGGIPAELGNLTRLGVLS 557 (569)
Q Consensus 481 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~l-~~~~~L~~L~l~~n-~~~~~~~~~l~~l~~L~~L~ 557 (569)
++.+|=+++.+..+..+.+.++++++.|.+.+|+--+.. .+-+ +-.++|+.|+|++| +|++.....+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 444444444444444444444444444444444321110 0000 12344444444444 24444444444444444444
Q ss_pred Cc
Q 047977 558 LD 559 (569)
Q Consensus 558 l~ 559 (569)
+.
T Consensus 183 l~ 184 (221)
T KOG3864|consen 183 LY 184 (221)
T ss_pred hc
Confidence 43
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.03 E-value=0.0098 Score=30.79 Aligned_cols=7 Identities=57% Similarity=1.151 Sum_probs=2.6
Q ss_pred EEeCcCC
Q 047977 507 FIRLSGN 513 (569)
Q Consensus 507 ~L~l~~~ 513 (569)
+||+++|
T Consensus 4 ~Ldls~n 10 (22)
T PF00560_consen 4 YLDLSGN 10 (22)
T ss_dssp EEEETSS
T ss_pred EEECCCC
Confidence 3333333
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.78 E-value=0.016 Score=29.97 Aligned_cols=19 Identities=32% Similarity=0.632 Sum_probs=9.5
Q ss_pred CcEEEccCCccccchhhhhc
Q 047977 481 LNRVRFDGNQFTGNITRAFG 500 (569)
Q Consensus 481 L~~L~l~~~~~~~~~~~~l~ 500 (569)
|++||+++|.++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 3443343
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.29 E-value=0.00025 Score=70.70 Aligned_cols=181 Identities=20% Similarity=0.256 Sum_probs=83.4
Q ss_pred CCCEEEcccCccccc----CCccccCCCCCCEEEccCCcccccCC----ccccCC-CCCCEEEccCCcccccC----Cch
Q 047977 359 NLLSLQLFFNNLSGT----IPPEIGSMASLVAFDVNTNQLHGELP----ENISRL-VNLNKFSVFTNNFSGSI----PGD 425 (569)
Q Consensus 359 ~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~l-~~L~~l~l~~~~~~~~~----~~~ 425 (569)
.+..+.+.+|.+... +...+...+.|..+++++|.+...-. ..+... ..++.+.+..|.++..- .+.
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 367777777776532 22344556777888888777763211 122222 34555556555554332 223
Q ss_pred hhccCCCCceEEcccCcCccc----cChhhh----CCCCCcEEEccCCcceeeC----CccccCCCC-CcEEEccCCccc
Q 047977 426 FGKFSPSLINVSFSNNSFSGE----LPYELC----SGFALEELTVNGNNFTGSL----PACMRNCSN-LNRVRFDGNQFT 492 (569)
Q Consensus 426 ~~~~~~~L~~L~l~~~~~~~~----~~~~~~----~~~~L~~L~l~~~~~~~~~----~~~l~~~~~-L~~L~l~~~~~~ 492 (569)
+.. ...++.++++.|.+... ++..+. ...+++.|.+++|.++... ...+...+. +.++++.+|.+.
T Consensus 168 L~~-~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 168 LEK-NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred Hhc-ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 333 23566666666654211 111111 2344555555555544211 112233333 444555555443
Q ss_pred cc----hhhhhcCC-CCCcEEeCcCCcccccCCc----CcccCCCCCEEECCCCcce
Q 047977 493 GN----ITRAFGVH-PRLDFIRLSGNHFIGEISP----DWGECRNLSNLQLDRNKIS 540 (569)
Q Consensus 493 ~~----~~~~l~~l-~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~n~~~ 540 (569)
+. ....+..+ +.++++++++|.++..... .+..+++++.+.++.|.+.
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 22 22223333 4445555555555432222 2344445555555555544
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.60 E-value=0.02 Score=48.65 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=21.2
Q ss_pred CCCEEEccCCcccccCCccccCCCCCCEEEccCCc
Q 047977 383 SLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNN 417 (569)
Q Consensus 383 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~ 417 (569)
.++.++.+++.+..+-...+.++++++.+.+.+|.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 46666666666665544555666666666666553
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.35 E-value=0.00074 Score=67.39 Aligned_cols=186 Identities=20% Similarity=0.197 Sum_probs=99.9
Q ss_pred ccCCCCCCEEEccCCccccccCc----ccccC-CCCCEEEcccCccccc----CCccccCCCCCCEEEccCCcccc----
Q 047977 330 IGKLTSLEKLDLSGNQLSGTIPP----TLWNL-TNLLSLQLFFNNLSGT----IPPEIGSMASLVAFDVNTNQLHG---- 396 (569)
Q Consensus 330 l~~~~~L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~---- 396 (569)
+...++|+.|++++|.+.+.... .+... ..++.|++..|.++.. +...+.....++.++++.|.+..
T Consensus 111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~ 190 (478)
T KOG4308|consen 111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLL 190 (478)
T ss_pred hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhH
Confidence 34445555555555554422111 11111 3344455555554422 12233335556666666555421
Q ss_pred cCCcc----ccCCCCCCEEEccCCcccccCC----chhhccCCCCceEEcccCcCccccC----hhhhCC-CCCcEEEcc
Q 047977 397 ELPEN----ISRLVNLNKFSVFTNNFSGSIP----GDFGKFSPSLINVSFSNNSFSGELP----YELCSG-FALEELTVN 463 (569)
Q Consensus 397 ~~~~~----~~~l~~L~~l~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~-~~L~~L~l~ 463 (569)
.++.. +....+++.+.+.+|.++...- ..+......+..+++..|.+.+... ..+... ..++.++++
T Consensus 191 ~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~ 270 (478)
T KOG4308|consen 191 VLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLS 270 (478)
T ss_pred HHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhh
Confidence 11112 2346677778888877653221 2223333336678888888765422 233333 567888888
Q ss_pred CCcceeeC----CccccCCCCCcEEEccCCccccch----hhhhcCCCCCcEEeCcCCcc
Q 047977 464 GNNFTGSL----PACMRNCSNLNRVRFDGNQFTGNI----TRAFGVHPRLDFIRLSGNHF 515 (569)
Q Consensus 464 ~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~ 515 (569)
.|.++... ...+..++.++++.++.|++.... ...+.....+.++.+.++..
T Consensus 271 ~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 330 (478)
T KOG4308|consen 271 RNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGK 330 (478)
T ss_pred cCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCc
Confidence 88887533 345667788888888888886432 23344556666677765543
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.90 E-value=0.098 Score=24.99 Aligned_cols=10 Identities=40% Similarity=0.501 Sum_probs=3.2
Q ss_pred CcEEeCcCCc
Q 047977 505 LDFIRLSGNH 514 (569)
Q Consensus 505 L~~L~l~~~~ 514 (569)
|++|++++|+
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3344444443
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.40 E-value=0.11 Score=27.45 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=6.2
Q ss_pred CCCcEEEccCCcccc
Q 047977 479 SNLNRVRFDGNQFTG 493 (569)
Q Consensus 479 ~~L~~L~l~~~~~~~ 493 (569)
++|++|+|++|.+++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 344555555554443
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.15 E-value=0.014 Score=50.61 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=40.1
Q ss_pred CCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeE
Q 047977 477 NCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVL 556 (569)
Q Consensus 477 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 556 (569)
.+...+.||++.|.+.. ....|+-++.+..||++.|.+. ..|++++....+..++.+.|..+ -.|.++...++++++
T Consensus 40 ~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 33444455555444431 2222334444445555555444 44555555555555555555444 345555555555555
Q ss_pred eCcCCcC
Q 047977 557 SLDSNEL 563 (569)
Q Consensus 557 ~l~~n~~ 563 (569)
+.-+|++
T Consensus 117 e~k~~~~ 123 (326)
T KOG0473|consen 117 EQKKTEF 123 (326)
T ss_pred hhccCcc
Confidence 5555544
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.29 E-value=0.44 Score=25.66 Aligned_cols=16 Identities=38% Similarity=0.493 Sum_probs=9.1
Q ss_pred CCCCEEECCCCcceec
Q 047977 527 RNLSNLQLDRNKISGG 542 (569)
Q Consensus 527 ~~L~~L~l~~n~~~~~ 542 (569)
++|+.|++++|++...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4556666666666543
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.29 E-value=0.44 Score=25.66 Aligned_cols=16 Identities=38% Similarity=0.493 Sum_probs=9.1
Q ss_pred CCCCEEECCCCcceec
Q 047977 527 RNLSNLQLDRNKISGG 542 (569)
Q Consensus 527 ~~L~~L~l~~n~~~~~ 542 (569)
++|+.|++++|++...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4556666666666543
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.92 E-value=0.61 Score=25.11 Aligned_cols=13 Identities=31% Similarity=0.588 Sum_probs=5.3
Q ss_pred CCcEEEccCCccc
Q 047977 480 NLNRVRFDGNQFT 492 (569)
Q Consensus 480 ~L~~L~l~~~~~~ 492 (569)
+|+.|++++|.+.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444443
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.92 E-value=0.61 Score=25.11 Aligned_cols=13 Identities=31% Similarity=0.588 Sum_probs=5.3
Q ss_pred CCcEEEccCCccc
Q 047977 480 NLNRVRFDGNQFT 492 (569)
Q Consensus 480 ~L~~L~l~~~~~~ 492 (569)
+|+.|++++|.+.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444443
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.20 E-value=0.016 Score=50.20 Aligned_cols=94 Identities=16% Similarity=0.111 Sum_probs=72.9
Q ss_pred cCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCC
Q 047977 11 PIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSN 90 (569)
Q Consensus 11 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 90 (569)
+.-..+..++..++||++.+.+. ....-|+-++.|..|+++.+.+. ..|..+.....++.++...|..... +..++.
T Consensus 33 ~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~-p~s~~k 109 (326)
T KOG0473|consen 33 IPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQ-PKSQKK 109 (326)
T ss_pred cchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhC-Cccccc
Confidence 34455778889999999998877 56666777888889999988887 6777788888888888877766543 456788
Q ss_pred CCCCcEEEccccccccc
Q 047977 91 MPSLTHLSLCYNELTLE 107 (569)
Q Consensus 91 ~~~L~~L~l~~~~~~~~ 107 (569)
.+++++++..++.+...
T Consensus 110 ~~~~k~~e~k~~~~~~~ 126 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEFFRK 126 (326)
T ss_pred cCCcchhhhccCcchHH
Confidence 89999999998876533
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=74.04 E-value=2.4 Score=23.36 Aligned_cols=14 Identities=36% Similarity=0.449 Sum_probs=8.0
Q ss_pred CCCCeEeCcCCcCc
Q 047977 551 TRLGVLSLDSNELT 564 (569)
Q Consensus 551 ~~L~~L~l~~n~~~ 564 (569)
++|++|+|++|+|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 34566666666553
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=72.02 E-value=3.6 Score=22.26 Aligned_cols=14 Identities=36% Similarity=0.506 Sum_probs=8.8
Q ss_pred CCCCeEeCcCCcCc
Q 047977 551 TRLGVLSLDSNELT 564 (569)
Q Consensus 551 ~~L~~L~l~~n~~~ 564 (569)
++|+.|+++.|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666664
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=62.30 E-value=5.8 Score=21.41 Aligned_cols=14 Identities=21% Similarity=0.522 Sum_probs=10.0
Q ss_pred CCCCEEECCCCcce
Q 047977 527 RNLSNLQLDRNKIS 540 (569)
Q Consensus 527 ~~L~~L~l~~n~~~ 540 (569)
++|+.|++++|+++
T Consensus 2 ~~L~~L~vs~N~Lt 15 (26)
T smart00364 2 PSLKELNVSNNQLT 15 (26)
T ss_pred cccceeecCCCccc
Confidence 45777777777776
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=60.83 E-value=6 Score=21.18 Aligned_cols=12 Identities=42% Similarity=0.581 Sum_probs=6.1
Q ss_pred CCCcEEeCcCCc
Q 047977 503 PRLDFIRLSGNH 514 (569)
Q Consensus 503 ~~L~~L~l~~~~ 514 (569)
++|++|++++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 445555555553
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=50.22 E-value=8.6 Score=38.64 Aligned_cols=65 Identities=23% Similarity=0.359 Sum_probs=29.3
Q ss_pred CCCCCCEEEccCCcccccC-CchhhccCCCCceEEcccC--cCccccChhhhCCCCCcEEEccCCcce
Q 047977 404 RLVNLNKFSVFTNNFSGSI-PGDFGKFSPSLINVSFSNN--SFSGELPYELCSGFALEELTVNGNNFT 468 (569)
Q Consensus 404 ~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~ 468 (569)
+.+.+..+++++|++.... ...+....|+|+.|+|++| .+.......-.+...|++|-+.||.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 3455666666666654321 1223333346666666665 221111111122334555555555544
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=44.52 E-value=12 Score=37.65 Aligned_cols=63 Identities=13% Similarity=0.179 Sum_probs=32.3
Q ss_pred CCCCCCEEEccCCccccc--CCccccCCCCCCEEEccCC--cccccC-CchhhccCCCCceEEcccCcCc
Q 047977 380 SMASLVAFDVNTNQLHGE--LPENISRLVNLNKFSVFTN--NFSGSI-PGDFGKFSPSLINVSFSNNSFS 444 (569)
Q Consensus 380 ~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~l~l~~~--~~~~~~-~~~~~~~~~~L~~L~l~~~~~~ 444 (569)
+.+.+..+.+++|++... +...-...++|+.|+|++| .+.... ...+.. ..|++|.+.+|++.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~--l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG--LPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC--CCHHHeeecCCccc
Confidence 345666666777765421 1112234567777777777 222111 111111 25677777777664
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.29 E-value=59 Score=40.15 Aligned_cols=33 Identities=39% Similarity=0.453 Sum_probs=30.6
Q ss_pred cCCCCCCcccCCcCccCCCCCCEEeCCCCcCcc
Q 047977 2 DLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEG 34 (569)
Q Consensus 2 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 34 (569)
||++|+|..+.+..|..+++|+.|+|++|++..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 799999999999999999999999999998763
Done!