Query 047977
Match_columns 569
No_of_seqs 282 out of 3629
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 08:24:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047977.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047977hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.3E-67 1.8E-71 560.9 46.2 547 14-568 94-721 (768)
2 3rgz_A Protein brassinosteroid 100.0 1E-65 3.5E-70 550.9 47.8 560 1-568 55-697 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-58 4.5E-63 492.3 46.3 566 1-567 30-625 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.8E-56 6.3E-61 475.8 49.5 561 2-568 10-601 (680)
5 3t6q_A CD180 antigen; protein- 100.0 2.6E-54 8.7E-59 453.3 39.6 532 24-567 16-563 (606)
6 3t6q_A CD180 antigen; protein- 100.0 5.7E-53 2E-57 443.0 42.1 527 3-541 19-561 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-52 3.8E-57 440.9 42.1 534 2-568 17-562 (606)
8 3j0a_A TOLL-like receptor 5; m 100.0 6.2E-50 2.1E-54 433.2 40.9 531 2-567 10-563 (844)
9 3vq2_A TLR4, TOLL-like recepto 100.0 4E-50 1.4E-54 421.5 38.1 504 1-518 37-560 (606)
10 2z63_A TOLL-like receptor 4, v 100.0 4.2E-48 1.4E-52 403.6 36.8 514 22-568 9-535 (570)
11 3j0a_A TOLL-like receptor 5; m 100.0 2.5E-47 8.4E-52 412.9 38.8 514 23-568 7-543 (844)
12 2z63_A TOLL-like receptor 4, v 100.0 1.2E-46 4.2E-51 392.5 35.5 508 4-544 15-535 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 1.6E-45 5.6E-50 381.9 31.7 490 21-568 6-514 (549)
14 2z81_A CD282 antigen, TOLL-lik 100.0 1.7E-44 5.9E-49 374.2 30.9 482 2-517 11-511 (549)
15 4g8a_A TOLL-like receptor 4; l 100.0 2E-42 7E-47 365.9 38.7 527 25-565 36-581 (635)
16 2z7x_B TOLL-like receptor 1, v 100.0 1.5E-43 5.1E-48 364.3 27.7 455 71-567 3-484 (520)
17 4eco_A Uncharacterized protein 100.0 2.9E-43 9.8E-48 368.5 22.1 433 92-540 81-600 (636)
18 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-42 3.7E-47 357.9 26.0 451 23-515 3-480 (520)
19 4g8a_A TOLL-like receptor 4; l 100.0 6.8E-41 2.3E-45 354.2 40.1 510 20-540 52-580 (635)
20 4eco_A Uncharacterized protein 100.0 4.5E-43 1.5E-47 367.0 17.4 455 44-520 81-604 (636)
21 4ecn_A Leucine-rich repeat pro 100.0 5.9E-41 2E-45 356.0 26.7 345 86-444 442-840 (876)
22 4ecn_A Leucine-rich repeat pro 100.0 3.1E-40 1.1E-44 350.4 29.6 354 199-565 435-841 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.7E-40 1.6E-44 340.9 26.2 458 68-567 31-513 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.4E-39 8.4E-44 335.5 26.0 459 20-516 31-510 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 3.4E-38 1.2E-42 319.0 31.1 382 169-568 14-412 (455)
26 3v47_A TOLL-like receptor 5B a 100.0 1.5E-36 5.3E-41 306.9 30.5 365 141-543 30-411 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 2E-35 6.9E-40 295.4 27.6 394 91-569 10-434 (454)
28 2id5_A Lingo-1, leucine rich r 100.0 1.5E-34 5E-39 293.9 27.6 302 237-564 32-333 (477)
29 1o6v_A Internalin A; bacterial 100.0 4.4E-34 1.5E-38 288.8 31.0 346 163-541 44-389 (466)
30 1jl5_A Outer protein YOPM; leu 100.0 3.4E-34 1.1E-38 286.6 28.2 388 115-568 10-415 (454)
31 1o6v_A Internalin A; bacterial 100.0 1.2E-33 4.2E-38 285.5 30.6 347 138-517 43-389 (466)
32 2id5_A Lingo-1, leucine rich r 100.0 3.8E-33 1.3E-37 283.4 28.8 301 214-516 33-333 (477)
33 3bz5_A Internalin-J, INLJ; leu 100.0 2.2E-33 7.5E-38 281.0 26.4 354 137-568 38-391 (457)
34 3bz5_A Internalin-J, INLJ; leu 100.0 8.7E-33 3E-37 276.6 28.4 272 9-326 31-302 (457)
35 3o6n_A APL1; leucine-rich repe 100.0 1.5E-32 5.2E-37 271.2 27.1 310 212-565 44-353 (390)
36 4fmz_A Internalin; leucine ric 100.0 1E-31 3.4E-36 261.3 28.0 306 210-564 41-346 (347)
37 4fmz_A Internalin; leucine ric 100.0 1.8E-31 6.1E-36 259.5 28.7 308 184-540 39-346 (347)
38 3oja_B Anopheles plasmodium-re 100.0 1.1E-31 3.7E-36 279.4 27.3 310 212-565 50-359 (597)
39 3o6n_A APL1; leucine-rich repe 100.0 2.2E-31 7.5E-36 263.0 27.1 310 187-540 43-352 (390)
40 1ogq_A PGIP-2, polygalacturona 100.0 1.5E-31 5E-36 254.9 20.8 253 310-565 50-306 (313)
41 3oja_B Anopheles plasmodium-re 100.0 1.8E-30 6E-35 270.3 27.3 310 187-516 49-358 (597)
42 1xku_A Decorin; proteoglycan, 100.0 2E-29 6.7E-34 243.0 27.2 269 286-562 52-330 (330)
43 1z7x_W Ribonuclease inhibitor; 100.0 1E-33 3.5E-38 286.8 -3.1 377 188-565 2-441 (461)
44 2ft3_A Biglycan; proteoglycan, 100.0 9.9E-30 3.4E-34 245.2 24.8 288 262-562 34-331 (332)
45 1z7x_W Ribonuclease inhibitor; 100.0 3.5E-33 1.2E-37 282.8 -2.1 393 164-556 2-460 (461)
46 1ogq_A PGIP-2, polygalacturona 100.0 5.1E-30 1.8E-34 244.2 19.7 252 286-541 50-306 (313)
47 1xku_A Decorin; proteoglycan, 100.0 7.2E-29 2.5E-33 239.0 27.4 269 261-538 52-330 (330)
48 2ft3_A Biglycan; proteoglycan, 100.0 5E-29 1.7E-33 240.2 25.2 268 261-538 54-331 (332)
49 2z66_A Variable lymphocyte rec 100.0 1.8E-27 6.3E-32 226.7 22.4 248 289-565 10-262 (306)
50 3ogk_B Coronatine-insensitive 100.0 2.1E-30 7E-35 271.2 0.3 297 259-558 218-545 (592)
51 3ogk_B Coronatine-insensitive 100.0 4.6E-30 1.6E-34 268.6 -0.3 378 187-566 110-528 (592)
52 2z80_A TOLL-like receptor 2, v 100.0 6.3E-28 2.1E-32 234.7 14.4 274 260-540 30-314 (353)
53 4fcg_A Uncharacterized protein 99.9 6.9E-27 2.4E-31 223.9 20.6 234 309-563 80-313 (328)
54 3zyj_A Leucine-rich repeat-con 99.9 3.7E-26 1.3E-30 229.0 25.0 248 288-564 45-292 (440)
55 3zyi_A Leucine-rich repeat-con 99.9 5E-26 1.7E-30 228.9 25.9 247 288-564 56-303 (452)
56 2z66_A Variable lymphocyte rec 99.9 6.3E-27 2.2E-31 222.9 18.1 280 264-549 10-296 (306)
57 4fcg_A Uncharacterized protein 99.9 2E-26 6.8E-31 220.7 20.4 236 284-540 79-314 (328)
58 2z80_A TOLL-like receptor 2, v 99.9 4.1E-26 1.4E-30 221.8 20.2 253 262-516 53-314 (353)
59 1ozn_A Reticulon 4 receptor; N 99.9 3.5E-26 1.2E-30 215.3 18.3 268 289-561 14-284 (285)
60 1ozn_A Reticulon 4 receptor; N 99.9 1.7E-25 5.8E-30 210.6 21.4 224 313-540 14-238 (285)
61 2p1m_B Transport inhibitor res 99.9 6.3E-29 2.1E-33 260.1 -3.5 436 120-562 47-542 (594)
62 3zyj_A Leucine-rich repeat-con 99.9 5.3E-25 1.8E-29 220.6 25.2 248 21-274 44-292 (440)
63 3zyi_A Leucine-rich repeat-con 99.9 4.2E-25 1.4E-29 222.1 24.3 248 21-274 55-303 (452)
64 2p1m_B Transport inhibitor res 99.9 4.9E-29 1.7E-33 260.9 -4.6 439 95-539 46-543 (594)
65 3o53_A Protein LRIM1, AGAP0063 99.9 2.9E-27 9.9E-32 225.9 6.8 240 282-559 30-270 (317)
66 1wwl_A Monocyte differentiatio 99.9 4E-27 1.4E-31 224.4 4.0 203 357-566 94-311 (312)
67 3o53_A Protein LRIM1, AGAP0063 99.9 1.7E-25 5.8E-30 213.7 11.8 218 332-564 32-250 (317)
68 3g06_A SSPH2 (leucine-rich rep 99.9 2.4E-23 8.3E-28 214.2 27.2 263 238-546 41-303 (622)
69 3oja_A Leucine-rich immune mol 99.9 3.4E-25 1.2E-29 223.7 11.7 235 310-559 34-270 (487)
70 3g06_A SSPH2 (leucine-rich rep 99.9 1.7E-23 5.9E-28 215.3 23.2 268 214-527 41-308 (622)
71 2z62_A TOLL-like receptor 4, v 99.9 2.1E-23 7.2E-28 195.3 20.0 209 334-568 28-241 (276)
72 1wwl_A Monocyte differentiatio 99.9 1.2E-25 4E-30 214.3 4.4 249 259-541 41-310 (312)
73 3oja_A Leucine-rich immune mol 99.9 2.5E-24 8.6E-29 217.3 13.9 219 331-564 31-250 (487)
74 2o6q_A Variable lymphocyte rec 99.9 1.4E-22 4.8E-27 188.8 21.9 203 360-566 18-220 (270)
75 2z62_A TOLL-like receptor 4, v 99.9 3.2E-22 1.1E-26 187.2 20.5 223 290-517 11-238 (276)
76 1p9a_G Platelet glycoprotein I 99.9 4.3E-22 1.5E-26 186.9 20.6 203 355-565 7-209 (290)
77 2ca6_A RAN GTPase-activating p 99.9 1.6E-24 5.6E-29 213.3 4.2 241 328-568 26-320 (386)
78 3goz_A Leucine-rich repeat-con 99.9 6.4E-24 2.2E-28 206.8 6.2 252 291-542 3-299 (362)
79 3rfs_A Internalin B, repeat mo 99.9 1.9E-22 6.4E-27 188.0 15.6 228 311-552 20-247 (272)
80 3rfs_A Internalin B, repeat mo 99.9 1.2E-22 4.1E-27 189.3 13.2 211 306-528 37-247 (272)
81 2o6q_A Variable lymphocyte rec 99.9 4.1E-21 1.4E-25 178.8 23.3 201 21-225 17-217 (270)
82 2ast_B S-phase kinase-associat 99.9 2.1E-23 7.1E-28 201.6 7.0 256 286-549 47-315 (336)
83 2ast_B S-phase kinase-associat 99.9 1.3E-22 4.4E-27 196.1 8.7 254 263-525 49-315 (336)
84 3m19_A Variable lymphocyte rec 99.9 4.6E-21 1.6E-25 176.4 18.6 179 384-566 16-194 (251)
85 1p9a_G Platelet glycoprotein I 99.9 1.1E-20 3.6E-25 177.4 21.1 205 14-226 4-208 (290)
86 4glp_A Monocyte differentiatio 99.9 3.5E-22 1.2E-26 190.2 11.0 202 358-566 91-309 (310)
87 3goz_A Leucine-rich repeat-con 99.9 6.2E-23 2.1E-27 199.8 5.9 256 266-522 3-303 (362)
88 1h6u_A Internalin H; cell adhe 99.9 1E-20 3.6E-25 179.3 16.5 208 315-541 24-231 (308)
89 2ca6_A RAN GTPase-activating p 99.9 1.7E-22 5.8E-27 198.9 4.3 241 282-543 28-319 (386)
90 2xwt_C Thyrotropin receptor; s 99.8 1.1E-20 3.9E-25 172.5 15.6 197 335-562 32-237 (239)
91 2xwt_C Thyrotropin receptor; s 99.8 3.5E-20 1.2E-24 169.2 16.4 203 301-537 25-236 (239)
92 1h6u_A Internalin H; cell adhe 99.8 1.1E-19 3.9E-24 172.2 17.2 193 16-225 37-229 (308)
93 3m19_A Variable lymphocyte rec 99.8 3.4E-19 1.2E-23 163.8 19.5 180 20-203 14-193 (251)
94 4glp_A Monocyte differentiatio 99.8 7.9E-20 2.7E-24 173.9 14.9 226 20-251 64-308 (310)
95 2v70_A SLIT-2, SLIT homolog 2 99.8 1.7E-18 5.7E-23 155.3 15.8 155 409-567 14-169 (220)
96 4ay9_X Follicle-stimulating ho 99.8 2.1E-18 7.1E-23 166.9 17.6 238 265-512 13-255 (350)
97 2o6s_A Variable lymphocyte rec 99.8 1E-18 3.5E-23 155.7 13.2 181 361-552 10-190 (208)
98 2v9t_B SLIT homolog 2 protein 99.8 3.3E-18 1.1E-22 153.4 15.6 153 409-565 14-166 (220)
99 2o6s_A Variable lymphocyte rec 99.8 2E-18 6.7E-23 153.9 13.8 189 337-540 10-198 (208)
100 4ay9_X Follicle-stimulating ho 99.8 6.7E-18 2.3E-22 163.3 18.2 240 289-537 12-256 (350)
101 3cvr_A Invasion plasmid antige 99.8 3.6E-18 1.2E-22 173.5 16.0 187 335-550 60-253 (571)
102 4fs7_A Uncharacterized protein 99.8 6.1E-17 2.1E-21 159.3 23.0 335 8-387 59-393 (394)
103 3e6j_A Variable lymphocyte rec 99.8 1.2E-17 4.1E-22 150.8 16.0 155 408-567 21-175 (229)
104 1h6t_A Internalin B; cell adhe 99.8 6.4E-18 2.2E-22 158.6 14.5 185 340-541 30-214 (291)
105 4ezg_A Putative uncharacterize 99.8 6.9E-18 2.4E-22 148.8 13.8 154 403-565 41-195 (197)
106 4fs7_A Uncharacterized protein 99.8 1E-16 3.5E-21 157.7 23.0 335 56-411 59-393 (394)
107 2xot_A Amphoterin-induced prot 99.7 7.5E-18 2.6E-22 163.6 12.8 157 407-564 40-202 (361)
108 1h6t_A Internalin B; cell adhe 99.7 1.4E-17 4.8E-22 156.3 13.3 190 312-518 26-215 (291)
109 2v9t_B SLIT homolog 2 protein 99.7 5.6E-17 1.9E-21 145.3 15.3 151 361-515 14-164 (220)
110 3sb4_A Hypothetical leucine ri 99.7 4E-17 1.4E-21 156.4 15.3 218 333-557 100-327 (329)
111 1m9s_A Internalin B; cell inva 99.7 6E-17 2E-21 166.6 16.8 191 311-518 22-212 (605)
112 3cvr_A Invasion plasmid antige 99.7 3.8E-17 1.3E-21 166.0 14.9 189 311-528 60-255 (571)
113 1m9s_A Internalin B; cell inva 99.7 5.5E-17 1.9E-21 166.8 15.8 192 336-544 23-214 (605)
114 2v70_A SLIT-2, SLIT homolog 2 99.7 1.1E-16 3.8E-21 143.4 15.4 152 361-516 14-166 (220)
115 4fdw_A Leucine rich hypothetic 99.7 8.8E-16 3E-20 150.0 21.8 268 17-299 110-383 (401)
116 1w8a_A SLIT protein; signaling 99.7 1.3E-16 4.4E-21 139.8 13.3 132 434-568 11-143 (192)
117 3e6j_A Variable lymphocyte rec 99.7 3.1E-16 1.1E-20 141.5 16.2 152 22-178 21-172 (229)
118 4ezg_A Putative uncharacterize 99.7 9.6E-17 3.3E-21 141.4 12.1 150 382-540 44-194 (197)
119 2xot_A Amphoterin-induced prot 99.7 1.9E-16 6.5E-21 153.7 14.2 176 337-516 21-202 (361)
120 1xeu_A Internalin C; cellular 99.7 8.9E-17 3E-21 148.3 10.8 171 356-542 17-187 (263)
121 4fdw_A Leucine rich hypothetic 99.7 5.7E-15 1.9E-19 144.3 24.1 268 40-322 109-382 (401)
122 1xeu_A Internalin C; cellular 99.7 5.6E-16 1.9E-20 142.9 14.1 160 3-178 26-185 (263)
123 3sb4_A Hypothetical leucine ri 99.7 5.6E-16 1.9E-20 148.5 14.6 103 164-268 225-328 (329)
124 1dce_A Protein (RAB geranylger 99.7 2E-19 6.8E-24 183.9 -10.1 209 331-558 346-567 (567)
125 2wfh_A SLIT homolog 2 protein 99.7 1E-15 3.5E-20 133.9 13.3 128 434-565 13-140 (193)
126 2ell_A Acidic leucine-rich nuc 99.6 3.4E-16 1.2E-20 134.1 9.1 131 432-564 25-160 (168)
127 4gt6_A Cell surface protein; l 99.6 7.1E-14 2.4E-18 137.4 26.7 159 8-173 51-213 (394)
128 2o6r_A Variable lymphocyte rec 99.6 1.8E-15 6.2E-20 130.7 12.7 133 432-567 8-140 (177)
129 2je0_A Acidic leucine-rich nuc 99.6 4.3E-16 1.5E-20 130.5 8.2 128 431-560 17-149 (149)
130 1dce_A Protein (RAB geranylger 99.6 3.6E-18 1.2E-22 174.6 -6.6 204 307-534 346-567 (567)
131 2ell_A Acidic leucine-rich nuc 99.6 4.2E-15 1.5E-19 127.2 11.0 133 406-541 24-161 (168)
132 4b8c_D Glucose-repressible alc 99.6 8.1E-16 2.8E-20 162.4 5.8 223 310-564 173-404 (727)
133 4gt6_A Cell surface protein; l 99.6 7.4E-13 2.5E-17 130.1 26.2 124 432-562 266-389 (394)
134 1w8a_A SLIT protein; signaling 99.6 2.5E-14 8.5E-19 125.1 13.3 127 2-131 14-141 (192)
135 2je0_A Acidic leucine-rich nuc 99.6 5.4E-15 1.8E-19 123.8 8.6 127 406-535 17-148 (149)
136 2wfh_A SLIT homolog 2 protein 99.5 5.1E-14 1.7E-18 123.0 13.7 108 432-540 32-139 (193)
137 1a9n_A U2A', U2A'; complex (nu 99.5 1.6E-14 5.3E-19 124.6 8.6 132 402-539 15-152 (176)
138 2o6r_A Variable lymphocyte rec 99.5 1.9E-13 6.5E-18 118.0 13.7 128 23-154 10-137 (177)
139 1ds9_A Outer arm dynein; leuci 99.5 3E-16 1E-20 138.3 -5.8 132 425-564 43-185 (198)
140 4b8c_D Glucose-repressible alc 99.5 8.8E-15 3E-19 154.5 4.3 142 303-448 217-358 (727)
141 3g39_A Variable lymphocyte rec 99.5 1.5E-13 5.2E-18 117.3 11.2 107 457-566 11-117 (170)
142 1a9n_A U2A', U2A'; complex (nu 99.5 9.9E-14 3.4E-18 119.6 9.8 127 432-564 20-153 (176)
143 2r9u_A Variable lymphocyte rec 99.4 4.4E-13 1.5E-17 114.8 11.5 105 458-565 15-119 (174)
144 4h09_A Hypothetical leucine ri 99.4 1.3E-10 4.6E-15 113.5 28.2 118 432-553 241-358 (379)
145 1ds9_A Outer arm dynein; leuci 99.4 4.4E-15 1.5E-19 130.8 -4.0 132 401-540 43-185 (198)
146 4h09_A Hypothetical leucine ri 99.4 1.5E-10 5.1E-15 113.2 27.8 308 207-530 40-359 (379)
147 3un9_A NLR family member X1; l 99.4 2.5E-14 8.6E-19 138.3 -2.0 160 406-565 101-284 (372)
148 3g39_A Variable lymphocyte rec 99.4 3E-12 1E-16 109.2 10.7 103 409-515 12-114 (170)
149 3un9_A NLR family member X1; l 99.4 7.4E-14 2.5E-18 135.0 0.5 162 405-566 71-254 (372)
150 2r9u_A Variable lymphocyte rec 99.3 5E-12 1.7E-16 108.2 10.6 104 409-516 15-118 (174)
151 2ifg_A High affinity nerve gro 99.2 6.1E-11 2.1E-15 114.5 11.0 102 436-540 13-116 (347)
152 2ifg_A High affinity nerve gro 99.1 4.8E-10 1.7E-14 108.1 11.0 102 411-516 13-116 (347)
153 2ra8_A Uncharacterized protein 98.9 5.3E-10 1.8E-14 107.0 5.5 156 401-562 167-341 (362)
154 2ra8_A Uncharacterized protein 98.9 5.8E-10 2E-14 106.7 4.3 137 426-566 168-322 (362)
155 1io0_A Tropomodulin; LRR prote 98.8 1.4E-09 4.7E-14 93.9 1.7 114 451-564 32-164 (185)
156 3e4g_A ATP synthase subunit S, 98.6 7.7E-09 2.6E-13 86.4 1.5 87 454-540 60-153 (176)
157 1io0_A Tropomodulin; LRR prote 98.6 1.6E-08 5.4E-13 87.2 3.5 109 432-540 37-164 (185)
158 3e4g_A ATP synthase subunit S, 98.6 1.9E-08 6.4E-13 84.1 2.7 83 432-514 62-150 (176)
159 3rw6_A Nuclear RNA export fact 98.3 1.5E-07 5.2E-12 85.1 1.8 80 476-557 167-257 (267)
160 3rw6_A Nuclear RNA export fact 98.2 6.5E-07 2.2E-11 80.9 4.5 80 452-533 167-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.7 2E-05 6.8E-10 67.2 3.9 107 432-538 42-168 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.7 1.5E-05 5.3E-10 67.8 2.5 115 449-563 35-169 (197)
163 3rfe_A Platelet glycoprotein I 97.0 0.0012 3.9E-08 52.5 6.2 55 483-539 12-67 (130)
164 3rfe_A Platelet glycoprotein I 96.3 0.0065 2.2E-07 48.1 5.8 55 435-491 12-67 (130)
165 2lz0_A Uncharacterized protein 91.0 0.28 9.5E-06 36.4 4.5 50 4-54 4-53 (100)
166 2lz0_A Uncharacterized protein 84.7 1.8 6.3E-05 31.9 5.5 49 29-78 5-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.3e-67 Score=560.89 Aligned_cols=547 Identities=34% Similarity=0.526 Sum_probs=403.5
Q ss_pred cCccCCCCCCEEeCCCCcCcccCCc--cccCCCCCcEEEccCCccccCcchhc-cCCCCCCEEECCCCCCCCCCCcc---
Q 047977 14 PAIGTLSNLTFLDLNNNLFEGSIPS--EMGDLSELQYLSVYNNSLNGAFPFQL-SNLRKVRYLDLGGNFLETPDWSK--- 87 (569)
Q Consensus 14 ~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~--- 87 (569)
+.|.++++|++|++++|.+.+.+|. .+.++++|++|++++|.+.+..|..+ .++++|++|++++|.+....+..
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 173 (768)
T 3rgz_A 94 SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173 (768)
T ss_dssp CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHH
T ss_pred hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhh
Confidence 4566666666666666666555555 56666666666666666554444433 55666666666666555444333
Q ss_pred CCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCC
Q 047977 88 FSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNL 167 (569)
Q Consensus 88 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 167 (569)
+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+.++. +..+++|++|++++|.+.+..+..+..+++|
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 249 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTEL 249 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSC
T ss_pred hccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCC
Confidence 4556666666666666553332 25566666666666666654444 4666666666666666665555566666666
Q ss_pred CEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCC-CCCCEEEcccCCCCcCCCcCCcCCCCCCEEEccc
Q 047977 168 TVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQL-KNLQHLDLRMNALNSTIPPELGLCTNLSFLALAM 246 (569)
Q Consensus 168 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 246 (569)
++|++++|.+.+..+.. .+++|++|++++|.+.+.+|..+... ++|++|++++|.+....+..++.+++|+++++++
T Consensus 250 ~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 327 (768)
T 3rgz_A 250 KLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327 (768)
T ss_dssp CEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCS
T ss_pred CEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCC
Confidence 66666666665444332 56666666666666666666655553 6677777777766666666667777777777777
Q ss_pred ccceeccCcc-CcCCCCCCEEeCcCCcCccccCccccCCCC-CCcEEEccCCcceeeCCccccC--CCCCcEEecccccc
Q 047977 247 NQLSGGLPLS-LSNLSRLNELGLSDNFLSGEISANLIGNWT-ELESLQIQNNSFMGNIPPEIGL--LTKLQYLFLYRNHF 322 (569)
Q Consensus 247 ~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~ 322 (569)
|.+.+..+.. +..+++|+.|++++|.+.+.++.. +..++ +|+.|++++|.+.+..+..+.. +++|++|++++|.+
T Consensus 328 n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l 406 (768)
T 3rgz_A 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES-LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406 (768)
T ss_dssp SEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT-HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred CcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH-HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcc
Confidence 7666444433 666677777777777666555544 33444 6777777777776666655554 67788888888888
Q ss_pred cccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccc
Q 047977 323 SGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENI 402 (569)
Q Consensus 323 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 402 (569)
++..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.+|..+
T Consensus 407 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 486 (768)
T 3rgz_A 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred ccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH
Confidence 77777888888888888888888887778888888888888888888887788888888888888888888887888888
Q ss_pred cCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCc---------
Q 047977 403 SRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPA--------- 473 (569)
Q Consensus 403 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------- 473 (569)
..+++|+.+++++|++++.+|..+..++ +|++|++++|.+.+.+|..+..+++|+.|++++|.+++.+|.
T Consensus 487 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~ 565 (768)
T 3rgz_A 487 SNCTNLNWISLSNNRLTGEIPKWIGRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 565 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCB
T ss_pred hcCCCCCEEEccCCccCCcCChHHhcCC-CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchh
Confidence 8888888888888888888888888876 888888888888888888888888888888888887755553
Q ss_pred -------------------------------------------------------------cccCCCCCcEEEccCCccc
Q 047977 474 -------------------------------------------------------------CMRNCSNLNRVRFDGNQFT 492 (569)
Q Consensus 474 -------------------------------------------------------------~l~~~~~L~~L~l~~~~~~ 492 (569)
.+.++++|+.||+++|.++
T Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~ 645 (768)
T 3rgz_A 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645 (768)
T ss_dssp CCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB
T ss_pred hhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc
Confidence 3445678999999999999
Q ss_pred cchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCcccCC
Q 047977 493 GNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGKNS 568 (569)
Q Consensus 493 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 568 (569)
+.+|..++.+++|+.|++++|.+++.+|..++.+++|+.|++++|++++.+|..++.+++|++|++++|+++|++|
T Consensus 646 g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred ccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1e-65 Score=550.93 Aligned_cols=560 Identities=32% Similarity=0.469 Sum_probs=514.3
Q ss_pred CcCCCCCCccc---CCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcch--hccCCCCCCEEEC
Q 047977 1 LDLSHNNISGP---IPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPF--QLSNLRKVRYLDL 75 (569)
Q Consensus 1 l~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l 75 (569)
|||+++.+.+. .+.+|.++++|+.++++.+.+. ..+..+.++++|++|++++|.+.+.+|. .+.++++|++|++
T Consensus 55 L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L 133 (768)
T 3rgz_A 55 IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNV 133 (768)
T ss_dssp EECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEEC
T ss_pred EECCCCCcCCccCccChhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEEC
Confidence 57889999887 7889999999999999999886 4678899999999999999999987887 8999999999999
Q ss_pred CCCCCCCCCCccC-CCCCCCcEEEcccccccccCCcc---ccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCC
Q 047977 76 GGNFLETPDWSKF-SNMPSLTHLSLCYNELTLEFPSF---ILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDN 151 (569)
Q Consensus 76 ~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 151 (569)
++|.+....+..+ ..+++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..+. ..+++|++|++++|
T Consensus 134 s~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~l~~L~~L~Ls~n 210 (768)
T 3rgz_A 134 SSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV---SRCVNLEFLDVSSN 210 (768)
T ss_dssp CSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC---TTCTTCCEEECCSS
T ss_pred cCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc---ccCCcCCEEECcCC
Confidence 9998876555444 78999999999999998777666 78999999999999999876553 78999999999999
Q ss_pred cccccCCcCCCCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcCCCc
Q 047977 152 QFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPP 231 (569)
Q Consensus 152 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 231 (569)
.+.+..+. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|.. .+++|++|++++|.+....+.
T Consensus 211 ~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~ 287 (768)
T 3rgz_A 211 NFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPD 287 (768)
T ss_dssp CCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCC
T ss_pred cCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCH
Confidence 99876666 999999999999999998777888999999999999999998777764 889999999999999877777
Q ss_pred CCcC-CCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCC
Q 047977 232 ELGL-CTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLT 310 (569)
Q Consensus 232 ~~~~-~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 310 (569)
.+.. +++|+++++++|.+++..+..+..+++|+.|++++|.+.+.++...+..+++|+.|++++|.+.+..|..+..++
T Consensus 288 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 367 (768)
T 3rgz_A 288 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367 (768)
T ss_dssp CSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHT
T ss_pred HHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhh
Confidence 7766 499999999999999999999999999999999999998888887789999999999999999988888888877
Q ss_pred -CCcEEecccccccccCCccccC--CCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEE
Q 047977 311 -KLQYLFLYRNHFSGPIPSEIGK--LTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAF 387 (569)
Q Consensus 311 -~L~~L~l~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 387 (569)
+|+.|++++|.+++..+..+.. +++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|
T Consensus 368 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 447 (768)
T 3rgz_A 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447 (768)
T ss_dssp TTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred cCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEE
Confidence 9999999999998877777766 8899999999999998899999999999999999999998899999999999999
Q ss_pred EccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcc
Q 047977 388 DVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNF 467 (569)
Q Consensus 388 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 467 (569)
++++|.+.+.+|..+..+++|+.+++++|.+++.+|..+..++ +|++|++++|++.+.+|..+..+++|+.|++++|++
T Consensus 448 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 526 (768)
T 3rgz_A 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT-NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred ECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCC-CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcc
Confidence 9999999999999999999999999999999999999999887 999999999999999999999999999999999999
Q ss_pred eeeCCccccCCCCCcEEEccCCccccchhhhh------------------------------------------------
Q 047977 468 TGSLPACMRNCSNLNRVRFDGNQFTGNITRAF------------------------------------------------ 499 (569)
Q Consensus 468 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l------------------------------------------------ 499 (569)
.+..|..+.++++|+.|++++|.+++.+|..+
T Consensus 527 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (768)
T 3rgz_A 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGG
T ss_pred cCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhc
Confidence 99999999999999999999999886666443
Q ss_pred ----------------------cCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEe
Q 047977 500 ----------------------GVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLS 557 (569)
Q Consensus 500 ----------------------~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 557 (569)
+.+++|+.||+++|.+++.+|..++.+++|+.|++++|++++.+|..++.+++|+.|+
T Consensus 607 l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~Ld 686 (768)
T 3rgz_A 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686 (768)
T ss_dssp GGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEE
Confidence 3457899999999999999999999999999999999999999999999999999999
Q ss_pred CcCCcCcccCC
Q 047977 558 LDSNELTGKNS 568 (569)
Q Consensus 558 l~~n~~~~~~~ 568 (569)
+++|+++|++|
T Consensus 687 Ls~N~l~g~ip 697 (768)
T 3rgz_A 687 LSSNKLDGRIP 697 (768)
T ss_dssp CCSSCCEECCC
T ss_pred CCCCcccCcCC
Confidence 99999999998
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.3e-58 Score=492.29 Aligned_cols=566 Identities=21% Similarity=0.200 Sum_probs=435.6
Q ss_pred CcCCCCCCcccCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCC
Q 047977 1 LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFL 80 (569)
Q Consensus 1 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 80 (569)
|||++|++.++.+.+|.++++|++|++++|.+.+..+.++.++++|++|++++|.++...+.+|.++++|++|++++|.+
T Consensus 30 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l 109 (680)
T 1ziw_A 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109 (680)
T ss_dssp EECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred EECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCcc
Confidence 45666777666666677777777777777776666666666777777777777766644444566777777777777766
Q ss_pred CCCCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhh-hhcCCCCcEEeccCCcccccCCc
Q 047977 81 ETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERL-FTNLGKLEYLNLTDNQFQGKLSP 159 (569)
Q Consensus 81 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~ 159 (569)
....+..|+.+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+ +..+++|++|++++|.+.+..+.
T Consensus 110 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 189 (680)
T 1ziw_A 110 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG 189 (680)
T ss_dssp CCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT
T ss_pred CccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChh
Confidence 66666666667777777777776665556666667777777777776664333222 12346677777777766665566
Q ss_pred CCCCCCCCCEEEccCCccccCCCcCc---CCCCCCcEEEcccCcceecCCccccCCCC--CCEEEcccCCCCcCCCcCCc
Q 047977 160 NVSKLSNLTVLRLATNKFSGPIPGDI---GLMSNIQLVELFNNSFTGQIPSSLGQLKN--LQHLDLRMNALNSTIPPELG 234 (569)
Q Consensus 160 ~l~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~~~~~~~ 234 (569)
.+..+++|+.+++.++.+.......+ ...++|+.|+++++.+.+..+.++..++. |++|++++|.+....+..++
T Consensus 190 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~ 269 (680)
T 1ziw_A 190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA 269 (680)
T ss_dssp GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT
T ss_pred hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccccc
Confidence 66666677777666655432111111 12467899999999888887888877654 99999999999888888899
Q ss_pred CCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCcc--------ccCccccCCCCCCcEEEccCCcceeeCCccc
Q 047977 235 LCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSG--------EISANLIGNWTELESLQIQNNSFMGNIPPEI 306 (569)
Q Consensus 235 ~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 306 (569)
.+++|+++++++|.+....+..+..+++|+.|+++++.... .+....+..+++|+.+++++|.+.+..+..+
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 349 (680)
T 1ziw_A 270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF 349 (680)
T ss_dssp TCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTT
T ss_pred CcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHh
Confidence 99999999999999998888889999999999998765432 2222347788999999999999987777788
Q ss_pred cCCCCCcEEecccccccc--cCCccccC--CCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCC-ccccCC
Q 047977 307 GLLTKLQYLFLYRNHFSG--PIPSEIGK--LTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIP-PEIGSM 381 (569)
Q Consensus 307 ~~~~~L~~L~l~~~~~~~--~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~ 381 (569)
..+++|++|++++|.+.. .....+.. .++|+.|++++|.+....+..|..+++|++|++++|.+.+.++ ..+..+
T Consensus 350 ~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l 429 (680)
T 1ziw_A 350 TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL 429 (680)
T ss_dssp TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTC
T ss_pred ccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCc
Confidence 899999999999987432 11222322 3689999999999988888889999999999999999876554 678899
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCCEEEccCCccc--ccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcE
Q 047977 382 ASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFS--GSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEE 459 (569)
Q Consensus 382 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 459 (569)
++|+++++++|.+.+..+..+..+++|+.+++++|.+. +..|..+..++ +|+.|++++|.+.+..+..+..+++|++
T Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 508 (680)
T 1ziw_A 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR-NLTILDLSNNNIANINDDMLEGLEKLEI 508 (680)
T ss_dssp TTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCC-CCCEEECCCCCCCcCChhhhccccccCE
Confidence 99999999999998777788889999999999999886 45677787777 9999999999998666667888999999
Q ss_pred EEccCCcceeeCC--------ccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCE
Q 047977 460 LTVNGNNFTGSLP--------ACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSN 531 (569)
Q Consensus 460 L~l~~~~~~~~~~--------~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 531 (569)
|++++|+++...+ ..+.++++|++|++++|.+....+..|+.+++|++|++++|.++...+..|+.+++|+.
T Consensus 509 L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 588 (680)
T 1ziw_A 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588 (680)
T ss_dssp EECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCE
Confidence 9999998874321 23788999999999999999666677999999999999999999766667899999999
Q ss_pred EECCCCcceecCCcCcc-CCCCCCeEeCcCCcCcccC
Q 047977 532 LQLDRNKISGGIPAELG-NLTRLGVLSLDSNELTGKN 567 (569)
Q Consensus 532 L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~~~~~~ 567 (569)
|++++|++++..+..+. .+++|++|++++||+...-
T Consensus 589 L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 589 LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp EECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred EECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 99999999987777777 7899999999999998753
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.8e-56 Score=475.82 Aligned_cols=561 Identities=21% Similarity=0.189 Sum_probs=479.3
Q ss_pred cCCCCCCcccCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCC
Q 047977 2 DLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLE 81 (569)
Q Consensus 2 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 81 (569)
|.++++++. .|..+. +++++|++++|.+.+..+.+|.++++|++|++++|.+++..|.++.++++|++|++++|.+.
T Consensus 10 ~cs~~~L~~-ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 86 (680)
T 1ziw_A 10 DCSHLKLTQ-VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86 (680)
T ss_dssp ECCSSCCSS-CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC
T ss_pred ECCCCCccc-cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC
Confidence 567788874 444444 79999999999999888888999999999999999999888899999999999999999999
Q ss_pred CCCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCC
Q 047977 82 TPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNV 161 (569)
Q Consensus 82 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 161 (569)
......|+.+++|++|++++|.+.+..+..++.+++|++|++++|.+++..+. .+.++++|++|++++|.+.+..+..+
T Consensus 87 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~ 165 (680)
T 1ziw_A 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQALKSEEL 165 (680)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCCCBCHHHH
T ss_pred ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCch-hhcccccCCEEEccCCcccccCHHHh
Confidence 88888899999999999999999877778899999999999999999865443 45889999999999999886555443
Q ss_pred --CCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccc---cCCCCCCEEEcccCCCCcCCCcCCcCC
Q 047977 162 --SKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSL---GQLKNLQHLDLRMNALNSTIPPELGLC 236 (569)
Q Consensus 162 --~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~~~~~~~~~~ 236 (569)
..+++|++|++++|.+.+..+..+..+++|+.+++.++.+.......+ ...++|++|++++|.+....+.++..+
T Consensus 166 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l 245 (680)
T 1ziw_A 166 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL 245 (680)
T ss_dssp GGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGG
T ss_pred hccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhcc
Confidence 356899999999999988888889999999999999887653211111 134789999999999998888888887
Q ss_pred CC--CCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCccee-----eCC----cc
Q 047977 237 TN--LSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMG-----NIP----PE 305 (569)
Q Consensus 237 ~~--L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~----~~ 305 (569)
+. |+.+++++|.++...+..+..+++|+.|++++|.+.+.. ...+.++++|+.++++++.... .+| ..
T Consensus 246 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~ 324 (680)
T 1ziw_A 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF-SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324 (680)
T ss_dssp GGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEEC-TTTTTTCTTCCEEECTTCBCCC------CCEECTTT
T ss_pred CcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccC-hhhhcCCCCccEEeccchhhhcccccccccccChhh
Confidence 65 999999999999888888999999999999999988544 4448899999999999764331 122 36
Q ss_pred ccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccc--cccCcccccC--CCCCEEEcccCcccccCCccccCC
Q 047977 306 IGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLS--GTIPPTLWNL--TNLLSLQLFFNNLSGTIPPEIGSM 381 (569)
Q Consensus 306 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~ 381 (569)
+..+++|++|++++|.+.+..+..|..+++|++|++++|.+. ......|..+ ++|+.+++++|.++...+..+..+
T Consensus 325 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 404 (680)
T 1ziw_A 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404 (680)
T ss_dssp TTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTC
T ss_pred cccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCC
Confidence 788999999999999999888888999999999999999743 2223334433 689999999999998888899999
Q ss_pred CCCCEEEccCCcccccCC-ccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCc--cccChhhhCCCCCc
Q 047977 382 ASLVAFDVNTNQLHGELP-ENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFS--GELPYELCSGFALE 458 (569)
Q Consensus 382 ~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~ 458 (569)
++|+.|++++|.+.+.++ ..+..+++|+.+++++|++.+..+..+..++ +|+.|++++|.+. +..|..+..+++|+
T Consensus 405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP-SLQRLMLRRVALKNVDSSPSPFQPLRNLT 483 (680)
T ss_dssp TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCT-TCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCc-ccccchhccccccccccCCcccccCCCCC
Confidence 999999999999987665 6788999999999999999988888888776 9999999999876 45778889999999
Q ss_pred EEEccCCcceeeCCccccCCCCCcEEEccCCccccchh--------hhhcCCCCCcEEeCcCCcccccCCcCcccCCCCC
Q 047977 459 ELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNIT--------RAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLS 530 (569)
Q Consensus 459 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--------~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 530 (569)
.|++++|+++...+..+.++++|++|++++|.+++..+ ..++.+++|++|++++|.+....+..|+.+++|+
T Consensus 484 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~ 563 (680)
T 1ziw_A 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred EEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcc
Confidence 99999999997667789999999999999999986432 2378999999999999999855555699999999
Q ss_pred EEECCCCcceecCCcCccCCCCCCeEeCcCCcCcccCC
Q 047977 531 NLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGKNS 568 (569)
Q Consensus 531 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 568 (569)
.|++++|++++..+..+..+++|++|++++|++++..|
T Consensus 564 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~ 601 (680)
T 1ziw_A 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 601 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCH
T ss_pred eeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccCh
Confidence 99999999998778888999999999999999987543
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.6e-54 Score=453.31 Aligned_cols=532 Identities=18% Similarity=0.188 Sum_probs=343.8
Q ss_pred EEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEccccc
Q 047977 24 FLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNE 103 (569)
Q Consensus 24 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 103 (569)
+++.++..++ .+|..+. +++++|++++|.+++..|.+|.++++|++|++++|.+....+..|.++++|++|++++|.
T Consensus 16 ~~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 16 TYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EEECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 3444444444 3333333 244555555555544444445555555555555554444444444555555555555555
Q ss_pred ccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccCCccccCCCc
Q 047977 104 LTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPG 183 (569)
Q Consensus 104 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 183 (569)
+.+..|..++.+++|++|++++|.+++ ++...+.++++|++|++++|.+.+...+.+..+++|++|++++|.+....+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 171 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSC-GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred ccccChhhhcccccccEeeccccCccc-CCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh
Confidence 444444444555555555555554442 2112234445555555555554432222333345555555555544444344
Q ss_pred CcCCCCCCc--EEEcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccc-----eeccCcc
Q 047977 184 DIGLMSNIQ--LVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQL-----SGGLPLS 256 (569)
Q Consensus 184 ~l~~~~~L~--~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~-----~~~~~~~ 256 (569)
.+..+++|+ .+++++|.+.+..+..+. ...|+++++++|... +..+..+.++....+....+ .......
T Consensus 172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~~~---~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~ 247 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQNL---LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247 (606)
T ss_dssp HHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCSCH---HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGG
T ss_pred hhhhhcccceeEEecCCCccCccChhHhh-hccccccccCCchhH---HHHhhhccccchhheechhhccccccccChhH
Confidence 444444454 445555554443333322 234555555544311 11111111111111111000 0011111
Q ss_pred CcCC--CCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCC
Q 047977 257 LSNL--SRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLT 334 (569)
Q Consensus 257 l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 334 (569)
+..+ .+|+.++++++.+. .++...+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..++
T Consensus 248 ~~~l~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 325 (606)
T 3t6q_A 248 FEGLCEMSVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325 (606)
T ss_dssp GGGGGGSEEEEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT
T ss_pred hchhhcCceeEEEeecCccC-ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccC
Confidence 2222 26788888888776 455555778888888888888877 5677778888888888888888866677788888
Q ss_pred CCCEEEccCCcccccc-CcccccCCCCCEEEcccCcccccC--CccccCCCCCCEEEccCCcccccCCccccCCCCCCEE
Q 047977 335 SLEKLDLSGNQLSGTI-PPTLWNLTNLLSLQLFFNNLSGTI--PPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKF 411 (569)
Q Consensus 335 ~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 411 (569)
+|++|++++|.+.... ...+..+++|++|++++|.+.... +..+..+++|++|++++|.+.+..+..+..+++|+.+
T Consensus 326 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 405 (606)
T 3t6q_A 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405 (606)
T ss_dssp TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEE
T ss_pred cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeE
Confidence 8888888888776333 345788888888888888887554 5677888889999998888887777788888889999
Q ss_pred EccCCcccccCCch-hhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCccee---eCCccccCCCCCcEEEcc
Q 047977 412 SVFTNNFSGSIPGD-FGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTG---SLPACMRNCSNLNRVRFD 487 (569)
Q Consensus 412 ~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~l~~~~~L~~L~l~ 487 (569)
++++|.+.+..+.. +..++ +|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..+..+..+++|++|+++
T Consensus 406 ~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls 484 (606)
T 3t6q_A 406 DLAFTRLKVKDAQSPFQNLH-LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484 (606)
T ss_dssp ECTTCCEECCTTCCTTTTCT-TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECT
T ss_pred ECCCCcCCCcccchhhhCcc-cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECC
Confidence 99988888766554 55555 89999999998887777778888999999999998865 223568889999999999
Q ss_pred CCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCcccC
Q 047977 488 GNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGKN 567 (569)
Q Consensus 488 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 567 (569)
+|.+++..|..++.+++|++|++++|++++..|..++.+++| .|++++|++++..|..+..+++|++|++++||+.+.-
T Consensus 485 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred CCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 999998888889999999999999999988888899999999 9999999999888888889999999999999998754
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.7e-53 Score=443.04 Aligned_cols=527 Identities=18% Similarity=0.168 Sum_probs=423.5
Q ss_pred CCCCCCcccCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCC
Q 047977 3 LSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLET 82 (569)
Q Consensus 3 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 82 (569)
.++..++ ..|..+. +++++|++++|.+++..+.+|.++++|++|++++|.+.+..|.+|.++++|++|++++|.+..
T Consensus 19 c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~ 95 (606)
T 3t6q_A 19 CENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF 95 (606)
T ss_dssp CTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSE
T ss_pred CCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccc
Confidence 4455555 3444444 378999999999988888889999999999999999887778889999999999999998888
Q ss_pred CCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCC
Q 047977 83 PDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVS 162 (569)
Q Consensus 83 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 162 (569)
..+..|+++++|++|++++|.+.+..+..++.+++|++|++++|.+.+..... +..+++|++|++++|.+.+..+..+.
T Consensus 96 ~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~ 174 (606)
T 3t6q_A 96 MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMS 174 (606)
T ss_dssp ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEECHHHHH
T ss_pred cChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccc-ccCCcccCEEEcccCcccccChhhhh
Confidence 87788889999999999999988665777888999999999999887532222 34588999999999988876677788
Q ss_pred CCCCCC--EEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCC-----CcCCCcCCcC
Q 047977 163 KLSNLT--VLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNAL-----NSTIPPELGL 235 (569)
Q Consensus 163 ~~~~L~--~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-----~~~~~~~~~~ 235 (569)
.+++|+ .|++++|.+....+..+. ...|+.+++.++.. .+..+..+..+....+..... .......+..
T Consensus 175 ~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~ 250 (606)
T 3t6q_A 175 SLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250 (606)
T ss_dssp TTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGG
T ss_pred hhcccceeEEecCCCccCccChhHhh-hccccccccCCchh---HHHHhhhccccchhheechhhccccccccChhHhch
Confidence 888888 888999888776655544 46789999888762 223333344333333322211 1122223333
Q ss_pred CC--CCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCc
Q 047977 236 CT--NLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQ 313 (569)
Q Consensus 236 ~~--~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 313 (569)
+. +++.++++++.+++..+..+..+++|+.|++++|.+. .++.. +..+++|+.|++++|.+.+..+..+..+++|+
T Consensus 251 l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 328 (606)
T 3t6q_A 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSG-LVGLSTLKKLVLSANKFENLCQISASNFPSLT 328 (606)
T ss_dssp GGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSS-CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCS
T ss_pred hhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChh-hcccccCCEEECccCCcCcCchhhhhccCcCC
Confidence 32 6888999999888777777888899999999999887 55554 67889999999999988876677788899999
Q ss_pred EEecccccccccCC-ccccCCCCCCEEEccCCcccccc--CcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEcc
Q 047977 314 YLFLYRNHFSGPIP-SEIGKLTSLEKLDLSGNQLSGTI--PPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVN 390 (569)
Q Consensus 314 ~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 390 (569)
+|++++|.+.+.++ ..+..+++|++|++++|.+.... +..+..+++|++|++++|.+....+..+..+++|+.|+++
T Consensus 329 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 408 (606)
T 3t6q_A 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408 (606)
T ss_dssp EEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECT
T ss_pred EEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECC
Confidence 99999998875444 44788999999999999887655 6678889999999999999887778888889999999999
Q ss_pred CCcccccCCc-cccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccc---cChhhhCCCCCcEEEccCCc
Q 047977 391 TNQLHGELPE-NISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGE---LPYELCSGFALEELTVNGNN 466 (569)
Q Consensus 391 ~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~ 466 (569)
+|.+.+..+. .+..+++|+.+++++|.+.+..+..+..++ +|++|++++|.+.+. .+..+..+++|+.|++++|+
T Consensus 409 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~ 487 (606)
T 3t6q_A 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP-ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487 (606)
T ss_dssp TCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCT-TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred CCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCC-CCCEEECCCCCCCccccccchhhccCCCccEEECCCCc
Confidence 9988865543 478899999999999999887787787776 999999999998752 23567888999999999999
Q ss_pred ceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCccee
Q 047977 467 FTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISG 541 (569)
Q Consensus 467 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 541 (569)
+++..|..+.++++|++|++++|.+++..|..++.+++| +|++++|.+++..|..++.+++|+.|++++|++..
T Consensus 488 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred cCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 998888899999999999999999999999999999999 99999999998888889999999999999998874
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-52 Score=440.89 Aligned_cols=534 Identities=20% Similarity=0.199 Sum_probs=384.8
Q ss_pred cCCCCCCcccCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCC
Q 047977 2 DLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLE 81 (569)
Q Consensus 2 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 81 (569)
+.++.+++.+ |..+. +++++|++++|.+++..+.+|.++++|++|++++|.+++..|.+|.++++|++|++++|.+.
T Consensus 17 ~c~~~~l~~i-p~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~ 93 (606)
T 3vq2_A 17 QCMDQKLSKV-PDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93 (606)
T ss_dssp ECTTSCCSSC-CTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EccCCCcccC-CCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccc
Confidence 4556666633 33333 67888888888887777777888888888888888777666777778888888888888777
Q ss_pred CCCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCcccc-CCchhhhhcCCCCcEEeccCCcccccCCcC
Q 047977 82 TPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSG-LIPERLFTNLGKLEYLNLTDNQFQGKLSPN 160 (569)
Q Consensus 82 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 160 (569)
...+..|+++++|++|++++|.+.+..+..++.+++|++|++++|.+.+ .+|.. |.++++|++|++++|.+.+..+..
T Consensus 94 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~~~~ 172 (606)
T 3vq2_A 94 SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTITVND 172 (606)
T ss_dssp CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEECTTT
T ss_pred ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceecChhh
Confidence 7777777788888888888887775555667778888888888887764 34443 477788888888888777666666
Q ss_pred CCCCCCCC----EEEccCCccccCCCcCcCCCCCCcEEEcccCcce-ecCCccccCCCCCCEEEcccCCCCcCCCcCCcC
Q 047977 161 VSKLSNLT----VLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFT-GQIPSSLGQLKNLQHLDLRMNALNSTIPPELGL 235 (569)
Q Consensus 161 l~~~~~L~----~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 235 (569)
+..+++|+ ++++++|.+....+..+... +|+.|++++|.+. ...+..+..++.++.+.+..+.+...
T Consensus 173 ~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~------- 244 (606)
T 3vq2_A 173 LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE------- 244 (606)
T ss_dssp THHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS-------
T ss_pred hhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccC-------
Confidence 65555444 67777777765544444443 7777777777664 34455666777777776654433211
Q ss_pred CCCCCEEEcccccceeccCccCcCCCCCCEEeC-cCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcE
Q 047977 236 CTNLSFLALAMNQLSGGLPLSLSNLSRLNELGL-SDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQY 314 (569)
Q Consensus 236 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 314 (569)
..+..+. ......+..+ .++.+.+ ..+.+.+..+. +..+++|+.++++++.+. .++ .+..+++|++
T Consensus 245 -~~l~~~~-------~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~ 311 (606)
T 3vq2_A 245 -RNLEIFE-------PSIMEGLCDV-TIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQS 311 (606)
T ss_dssp -CCCSCCC-------GGGGTTGGGS-EEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSE
T ss_pred -CcccccC-------hHHhhhhhhc-cHhheeccccccccccccc--cccCCCCCEEEecCccch-hhh-hccccccCCE
Confidence 0010000 0001111111 3455555 34445444443 667788888888888775 344 6777788888
Q ss_pred EecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCccccc--CCccccCCCCCCEEEccCC
Q 047977 315 LFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGT--IPPEIGSMASLVAFDVNTN 392 (569)
Q Consensus 315 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~ 392 (569)
|++++|.+. .+| .+ .+++|++|++++|...... .+..+++|++|++++|.++.. .+..+..+++|+.|++++|
T Consensus 312 L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n 386 (606)
T 3vq2_A 312 LSIIRCQLK-QFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386 (606)
T ss_dssp EEEESCCCS-SCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC
T ss_pred EEcccccCc-ccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC
Confidence 888888884 666 44 7888888888888554332 566788888888888887754 3667778888888888888
Q ss_pred cccccCCccccCCCCCCEEEccCCcccccCC-chhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCccee-e
Q 047977 393 QLHGELPENISRLVNLNKFSVFTNNFSGSIP-GDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTG-S 470 (569)
Q Consensus 393 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~ 470 (569)
.+. .++..+..+++|+.+++++|.+.+..+ ..+..++ +|++|++++|.+.+..+..+..+++|++|++++|.+.+ .
T Consensus 387 ~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 464 (606)
T 3vq2_A 387 GAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE-KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT 464 (606)
T ss_dssp SEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT-TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred ccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccc-cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcc
Confidence 877 455777888888888888888887766 4555665 88889998888887777788888899999999998876 3
Q ss_pred CCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCC
Q 047977 471 LPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNL 550 (569)
Q Consensus 471 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l 550 (569)
.|..+.++++|++|++++|.+++..|..++.+++|++|++++|++++..|..++.+++|+.|++++|+++ .+|..+..+
T Consensus 465 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l 543 (606)
T 3vq2_A 465 LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHF 543 (606)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGS
T ss_pred hHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhh
Confidence 6778888899999999999888888888888999999999999988888888888999999999999888 466668888
Q ss_pred C-CCCeEeCcCCcCcccCC
Q 047977 551 T-RLGVLSLDSNELTGKNS 568 (569)
Q Consensus 551 ~-~L~~L~l~~n~~~~~~~ 568 (569)
+ +|++|++++||+.+.-+
T Consensus 544 ~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 544 PKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CTTCCEEECCSCCCCCSST
T ss_pred cccCcEEEccCCCcccCCc
Confidence 7 59999999999887543
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.2e-50 Score=433.18 Aligned_cols=531 Identities=20% Similarity=0.192 Sum_probs=403.2
Q ss_pred cCCCCCCcccCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCc-chhccCCCCCCEEECCCCCC
Q 047977 2 DLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAF-PFQLSNLRKVRYLDLGGNFL 80 (569)
Q Consensus 2 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~ 80 (569)
|.++++++.+.. ..+++++|++++|.+++..+..|.++++|++|++++|.....+ |.+|.++++|++|++++|.+
T Consensus 10 dcs~~~L~~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l 85 (844)
T 3j0a_A 10 FYRFCNLTQVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85 (844)
T ss_dssp EESCCCSSCCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC
T ss_pred EccCCCCCCCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC
Confidence 456677775543 4578899999999888888888889999999999888554344 77788889999999998888
Q ss_pred CCCCCccCCCCCCCcEEEcccccccccCCcc--ccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCC
Q 047977 81 ETPDWSKFSNMPSLTHLSLCYNELTLEFPSF--ILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLS 158 (569)
Q Consensus 81 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 158 (569)
....+..|..+++|++|++++|.+.+..+.. +..+++|++|++++|.+++..+...|.++++|++|++++|.+.+..+
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 8887888888899999999988887655544 78888899999988888765554556888888888888888877666
Q ss_pred cCCCCC--CCCCEEEccCCccccCCCcCcCCCCC------CcEEEcccCcceecCCccccC---CCCCCEEEcccCCCCc
Q 047977 159 PNVSKL--SNLTVLRLATNKFSGPIPGDIGLMSN------IQLVELFNNSFTGQIPSSLGQ---LKNLQHLDLRMNALNS 227 (569)
Q Consensus 159 ~~l~~~--~~L~~L~l~~~~~~~~~~~~l~~~~~------L~~L~l~~~~~~~~~~~~l~~---l~~L~~L~l~~~~~~~ 227 (569)
..+..+ ++|+.|++++|.+....+..+..+.+ |+.|++++|.+....+..+.. ...++.+.+..+....
T Consensus 166 ~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~ 245 (844)
T 3j0a_A 166 HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245 (844)
T ss_dssp GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC
T ss_pred HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc
Confidence 666666 78888888888877666655555544 777777777665554444432 2456666665332211
Q ss_pred CCCcCCcCCCCCCEEEcccccceeccCccCcC--CCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCcc
Q 047977 228 TIPPELGLCTNLSFLALAMNQLSGGLPLSLSN--LSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPE 305 (569)
Q Consensus 228 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 305 (569)
. + ..+.+.......+.. .++|+.|++++|.+.+ .....+..+++|+.|++++|.+.+..+..
T Consensus 246 ~----~-----------~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 309 (844)
T 3j0a_A 246 G----F-----------GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKINKIADEA 309 (844)
T ss_dssp S----S-----------SCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE-ECSCCSSSCCCCCEEEEESCCCCEECTTT
T ss_pred c----c-----------cccccCCCChhhhhccccCCccEEECCCCcccc-cChhhhhcCCCCCEEECCCCcCCCCChHH
Confidence 1 0 011111112222333 3678888888888774 34444778888999999988888777778
Q ss_pred ccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCC
Q 047977 306 IGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLV 385 (569)
Q Consensus 306 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 385 (569)
+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+....+..|..+++|++|++++|.++. +..+++|+
T Consensus 310 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~L~ 384 (844)
T 3j0a_A 310 FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIP 384 (844)
T ss_dssp TTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-----CSSCCSCS
T ss_pred hcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-----ccCCCCcc
Confidence 8888899999999998887777888888999999999998887777778888999999999988762 23378899
Q ss_pred EEEccCCcccccCCccccCCCCCCEEEccCCcccccCCch-hhccCCCCceEEcccCcCccccCh-hhhCCCCCcEEEcc
Q 047977 386 AFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGD-FGKFSPSLINVSFSNNSFSGELPY-ELCSGFALEELTVN 463 (569)
Q Consensus 386 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~ 463 (569)
.+++++|.+. .+|.. ..+++.+++++|.+++..... +..++ +|+.|++++|.+.+..+. ....+++|+.|+++
T Consensus 385 ~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls 459 (844)
T 3j0a_A 385 DIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVP-HLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459 (844)
T ss_dssp EEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCT-TCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEE
T ss_pred hhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCC-ccceeeCCCCcccccccccccccCCccccccCC
Confidence 9999998887 44432 567888999999887643333 23444 999999999998754332 34457899999999
Q ss_pred CCccee-----eCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCc
Q 047977 464 GNNFTG-----SLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNK 538 (569)
Q Consensus 464 ~~~~~~-----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 538 (569)
+|.+.. ..+..+.++++|+.|++++|.+++..+..|+.+++|++|++++|.+++..+..+. ++|+.|++++|+
T Consensus 460 ~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQ 537 (844)
T ss_dssp SCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEEC
T ss_pred CCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCc
Confidence 998862 3345688899999999999999988888899999999999999999877666666 899999999999
Q ss_pred ceecCCcCccCCCCCCeEeCcCCcCcccC
Q 047977 539 ISGGIPAELGNLTRLGVLSLDSNELTGKN 567 (569)
Q Consensus 539 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 567 (569)
+++..|..+ ++|+.|++++||+..+-
T Consensus 538 l~~~~~~~~---~~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 538 LLAPNPDVF---VSLSVLDITHNKFICEC 563 (844)
T ss_dssp CCCCCSCCC---SSCCEEEEEEECCCCSS
T ss_pred CCCCChhHh---CCcCEEEecCCCccccc
Confidence 998888765 47899999999998643
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4e-50 Score=421.49 Aligned_cols=504 Identities=19% Similarity=0.170 Sum_probs=423.0
Q ss_pred CcCCCCCCcccCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCC
Q 047977 1 LDLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFL 80 (569)
Q Consensus 1 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 80 (569)
|||++|++.++.+.+|.++++|++|++++|.+++..+.+|.++++|++|++++|.+++..|..|.++++|++|++++|.+
T Consensus 37 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 116 (606)
T 3vq2_A 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCC
T ss_pred EECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcc
Confidence 58999999999999999999999999999999988899999999999999999999988899999999999999999999
Q ss_pred CCCCCccCCCCCCCcEEEcccccccc-cCCccccCCCCCCEEEcccCccccCCchhhhhcCCCC----cEEeccCCcccc
Q 047977 81 ETPDWSKFSNMPSLTHLSLCYNELTL-EFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKL----EYLNLTDNQFQG 155 (569)
Q Consensus 81 ~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L----~~L~l~~~~~~~ 155 (569)
....+..++.+++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+. .+..+.+| +++++++|.+.+
T Consensus 117 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~~l~~L~l~~n~l~~ 195 (606)
T 3vq2_A 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN-DLQFLRENPQVNLSLDMSLNPIDF 195 (606)
T ss_dssp CCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT-TTHHHHHCTTCCCEEECTTCCCCE
T ss_pred ccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh-hhhhhhccccccceeeccCCCcce
Confidence 98887889999999999999999985 5689999999999999999999854443 34555554 489999999986
Q ss_pred cCCcCCCCCCCCCEEEccCCccc-cCCCcCcCCCCCCcEEEcccCccee------cCCccccCCC--CCCEEEc-ccCCC
Q 047977 156 KLSPNVSKLSNLTVLRLATNKFS-GPIPGDIGLMSNIQLVELFNNSFTG------QIPSSLGQLK--NLQHLDL-RMNAL 225 (569)
Q Consensus 156 ~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~------~~~~~l~~l~--~L~~L~l-~~~~~ 225 (569)
..+..+... +|+.|++++|.+. ...+..+..++.++.+.+....+.. ..+..+..+. .++.+.+ ..+.+
T Consensus 196 ~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~ 274 (606)
T 3vq2_A 196 IQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDF 274 (606)
T ss_dssp ECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTC
T ss_pred eCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccc
Confidence 665555554 8999999999765 3345567788888888876543321 1111121211 4566666 45555
Q ss_pred CcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCcc
Q 047977 226 NSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPE 305 (569)
Q Consensus 226 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 305 (569)
....+. +..+++|+.+++.++.+... + .+..+++|+.|++++|.+ +.++. + .+++|+.+++++|...+.. .
T Consensus 275 ~~~~~~-~~~l~~L~~L~l~~~~~~~l-~-~l~~~~~L~~L~l~~n~l-~~lp~--~-~l~~L~~L~l~~n~~~~~~--~ 345 (606)
T 3vq2_A 275 SDDIVK-FHCLANVSAMSLAGVSIKYL-E-DVPKHFKWQSLSIIRCQL-KQFPT--L-DLPFLKSLTLTMNKGSISF--K 345 (606)
T ss_dssp CGGGGS-CGGGTTCSEEEEESCCCCCC-C-CCCTTCCCSEEEEESCCC-SSCCC--C-CCSSCCEEEEESCSSCEEC--C
T ss_pred cccccc-cccCCCCCEEEecCccchhh-h-hccccccCCEEEcccccC-ccccc--C-CCCccceeeccCCcCccch--h
Confidence 555554 88899999999999998743 4 788899999999999998 46663 4 8999999999999655444 4
Q ss_pred ccCCCCCcEEeccccccccc--CCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCC-ccccCCC
Q 047977 306 IGLLTKLQYLFLYRNHFSGP--IPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIP-PEIGSMA 382 (569)
Q Consensus 306 ~~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~ 382 (569)
+..+++|+.|++++|.+++. .+..+..+++|++|++++|.+.. .+..+..+++|++|++++|.+.+..+ ..+..++
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 424 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence 66899999999999998755 37788899999999999999874 55788999999999999999987666 6788999
Q ss_pred CCCEEEccCCcccccCCccccCCCCCCEEEccCCcccc-cCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEE
Q 047977 383 SLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSG-SIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELT 461 (569)
Q Consensus 383 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 461 (569)
+|+.|++++|.+.+..+..+..+++|+.+++++|.+++ ..|..+..++ +|++|++++|.+.+..+..+..+++|++|+
T Consensus 425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 503 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT-NLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503 (606)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC-CCCEEECCCCcCCccChhhhcccccCCEEE
Confidence 99999999999998888889999999999999999987 3677777776 999999999999988888899999999999
Q ss_pred ccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCC-CCcEEeCcCCccccc
Q 047977 462 VNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHP-RLDFIRLSGNHFIGE 518 (569)
Q Consensus 462 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~ 518 (569)
+++|++++..|..+.++++|++|++++|.++ .+|..+..++ +|++|++++|++...
T Consensus 504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp CCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred CCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccC
Confidence 9999999888899999999999999999998 5666688887 699999999998743
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.2e-48 Score=403.55 Aligned_cols=514 Identities=17% Similarity=0.182 Sum_probs=390.9
Q ss_pred CCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEccc
Q 047977 22 LTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCY 101 (569)
Q Consensus 22 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 101 (569)
.++++.++.+++ .+|..+. +++++|++++|.+++..+.+|.++++|++|++++|.+....+..|+.+++|++|++++
T Consensus 9 ~~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 9 NITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TTEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence 456777776676 4555554 5788999999988877777888889999999998888887777888888899999988
Q ss_pred ccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccc-cCCcCCCCCCCCCEEEccCCccccC
Q 047977 102 NELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQG-KLSPNVSKLSNLTVLRLATNKFSGP 180 (569)
Q Consensus 102 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~ 180 (569)
|.+....+..+..+++|++|++++|.+++ ++...+.++++|++|++++|.+.+ ..+..+..+++|++|++++|.+...
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCC-STTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred CcCCccCHhhhcCcccccccccccccccc-CCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence 88886667788888888888888888773 343335788888888888888775 3567778888888888888877766
Q ss_pred CCcCcCCCCCC----cEEEcccCcceecCCccccCCCCCCEEEcccCCCCc-CCCcCCcCCCCCCEEEcccccceeccCc
Q 047977 181 IPGDIGLMSNI----QLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNS-TIPPELGLCTNLSFLALAMNQLSGGLPL 255 (569)
Q Consensus 181 ~~~~l~~~~~L----~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 255 (569)
.+..+..+++| +.+++++|.+....+..+... +|+++++++|.... ..+..+..++.++...+....+.
T Consensus 165 ~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~----- 238 (570)
T 2z63_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR----- 238 (570)
T ss_dssp CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECC-----
T ss_pred cHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeecccccc-----
Confidence 56666666666 677777777776655555544 67777777664221 11222334444444433221111
Q ss_pred cCcCCCCCCEEeCcCCcCccccCccccCCCC--CCcEEEccCC-cceeeCCccccCCCCCcEEecccccccccCCccccC
Q 047977 256 SLSNLSRLNELGLSDNFLSGEISANLIGNWT--ELESLQIQNN-SFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGK 332 (569)
Q Consensus 256 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 332 (569)
....++ .+....+.+++ .++.+++.++ .+.+..+..+..+++|+.|++++|.+. .+|..+..
T Consensus 239 ---~~~~l~-----------~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~ 303 (570)
T 2z63_A 239 ---NEGNLE-----------KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYN 303 (570)
T ss_dssp ---CCSSCE-----------ECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSC
T ss_pred ---Cchhhh-----------hcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhcc
Confidence 111111 11111122233 2556677766 555566777888899999999999887 57777777
Q ss_pred CCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccC--CccccCCCCCCE
Q 047977 333 LTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGEL--PENISRLVNLNK 410 (569)
Q Consensus 333 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~ 410 (569)
+ +|++|++++|.+. ..+. ..+++|+.+++++|.+....+. ..+++|+.|++++|.+.+.. +..+..+++|+.
T Consensus 304 ~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~ 377 (570)
T 2z63_A 304 F-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377 (570)
T ss_dssp C-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCE
T ss_pred C-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCE
Confidence 7 9999999999887 3333 4778999999999987654433 67889999999999887543 567788999999
Q ss_pred EEccCCcccccCCchhhccCCCCceEEcccCcCccccC-hhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCC
Q 047977 411 FSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELP-YELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGN 489 (569)
Q Consensus 411 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 489 (569)
+++++|.+.+..+. +..++ +|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+.++++|++|++++|
T Consensus 378 L~l~~n~l~~~~~~-~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 455 (570)
T 2z63_A 378 LDLSFNGVITMSSN-FLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455 (570)
T ss_dssp EECCSCSEEEEEEE-EETCT-TCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred EECCCCcccccccc-ccccC-CCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCC
Confidence 99999988855443 66665 99999999999876555 46778899999999999999888888999999999999999
Q ss_pred ccc-cchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCcccCC
Q 047977 490 QFT-GNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGKNS 568 (569)
Q Consensus 490 ~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 568 (569)
.+. +.+|..++.+++|++|++++|.+++..|..|+.+++|+.|++++|++++..+..+..+++|++|++++|++++..|
T Consensus 456 ~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 997 5688889999999999999999998889999999999999999999998888889999999999999999999876
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.5e-47 Score=412.85 Aligned_cols=514 Identities=19% Similarity=0.215 Sum_probs=410.8
Q ss_pred CEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCC-CCCCCCccCCCCCCCcEEEccc
Q 047977 23 TFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNF-LETPDWSKFSNMPSLTHLSLCY 101 (569)
Q Consensus 23 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~ 101 (569)
++.+.++++++ .+|. -.+++++|++++|.+++..+..|.++++|++|++++|. +..+.+..|..+++|++|++++
T Consensus 7 ~~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 46777888888 4555 34789999999999998888889999999999999994 4445577889999999999999
Q ss_pred ccccccCCccccCCCCCCEEEcccCccccCCch-hhhhcCCCCcEEeccCCcccccCC-cCCCCCCCCCEEEccCCcccc
Q 047977 102 NELTLEFPSFILTCRNLTYLDLSLNKLSGLIPE-RLFTNLGKLEYLNLTDNQFQGKLS-PNVSKLSNLTVLRLATNKFSG 179 (569)
Q Consensus 102 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~ 179 (569)
|.+....|..+..+++|++|++++|.+++.++. ..|.++++|++|++++|.+.+..+ ..+..+++|++|++++|.+..
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 999877889999999999999999998865544 346888999999999998876544 468889999999999988877
Q ss_pred CCCcCcCCC--CCCcEEEcccCcceecCCccccCCCC------CCEEEcccCCCCcCCCcCCcC---CCCCCEEEccccc
Q 047977 180 PIPGDIGLM--SNIQLVELFNNSFTGQIPSSLGQLKN------LQHLDLRMNALNSTIPPELGL---CTNLSFLALAMNQ 248 (569)
Q Consensus 180 ~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~~~~~~---~~~L~~l~l~~~~ 248 (569)
..+..+..+ ++|+.|++++|.+.+..+..+..+++ |++|++++|.+....+..+.. ...++.+.+..+.
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 777777665 78888888888877666655555544 777777777665544443322 1344455444322
Q ss_pred ceeccCccCcCCCCCCEEeCcCCcCccccCccccCC--CCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccC
Q 047977 249 LSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGN--WTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPI 326 (569)
Q Consensus 249 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 326 (569)
.... +..+.+. ......+.+ .++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..
T Consensus 243 ~~~~---------------~~~~~l~-~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 306 (844)
T 3j0a_A 243 MGAG---------------FGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA 306 (844)
T ss_dssp CBCS---------------SSCSSST-TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC
T ss_pred cccc---------------ccccccC-CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC
Confidence 2110 0111121 112222333 378999999999999888888999999999999999999888
Q ss_pred CccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCC
Q 047977 327 PSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLV 406 (569)
Q Consensus 327 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 406 (569)
+..|..+++|++|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+ +..++
T Consensus 307 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~ 381 (844)
T 3j0a_A 307 DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIP 381 (844)
T ss_dssp TTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-----CSSCC
T ss_pred hHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-----ccCCC
Confidence 8899999999999999999987888899999999999999999987777789999999999999999873 33488
Q ss_pred CCCEEEccCCcccccCCchhhccCCCCceEEcccCcCcccc-ChhhhCCCCCcEEEccCCcceeeCC-ccccCCCCCcEE
Q 047977 407 NLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGEL-PYELCSGFALEELTVNGNNFTGSLP-ACMRNCSNLNRV 484 (569)
Q Consensus 407 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L 484 (569)
+|+.+.+++|+++ .+|.. ...++.|++++|.+.+.. +..+..+++|+.|++++|++++..+ ..+..+++|+.|
T Consensus 382 ~L~~L~l~~N~l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L 456 (844)
T 3j0a_A 382 SIPDIFLSGNKLV-TLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQL 456 (844)
T ss_dssp SCSEEEEESCCCC-CCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBC
T ss_pred CcchhccCCCCcc-ccccc----ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccc
Confidence 9999999999988 33332 348999999999987542 2345678999999999999985433 245678999999
Q ss_pred EccCCccc-----cchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCc
Q 047977 485 RFDGNQFT-----GNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLD 559 (569)
Q Consensus 485 ~l~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 559 (569)
++++|.+. +..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|++++..+..+. ++|+.|+++
T Consensus 457 ~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls 534 (844)
T 3j0a_A 457 FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDIS 534 (844)
T ss_dssp EEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEE
T ss_pred cCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECC
Confidence 99999986 34456788999999999999999988888899999999999999999987777666 899999999
Q ss_pred CCcCcccCC
Q 047977 560 SNELTGKNS 568 (569)
Q Consensus 560 ~n~~~~~~~ 568 (569)
+|++++..|
T Consensus 535 ~N~l~~~~~ 543 (844)
T 3j0a_A 535 RNQLLAPNP 543 (844)
T ss_dssp EECCCCCCS
T ss_pred CCcCCCCCh
Confidence 999999876
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-46 Score=392.46 Aligned_cols=508 Identities=21% Similarity=0.207 Sum_probs=375.7
Q ss_pred CCCCCcccCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCC
Q 047977 4 SHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETP 83 (569)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 83 (569)
++.+++. .|..+ .+++++|++++|.+++..+.+|.++++|++|++++|.+++..+.+|.++++|++|++++|.+...
T Consensus 15 ~~~~l~~-ip~~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~ 91 (570)
T 2z63_A 15 MELNFYK-IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (570)
T ss_dssp CSSCCSS-CCSSS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCCCccc-cCCCc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCcc
Confidence 3445553 34434 35899999999999988888999999999999999999977788899999999999999999988
Q ss_pred CCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCcccc-CCchhhhhcCCCCcEEeccCCcccccCCcCCC
Q 047977 84 DWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSG-LIPERLFTNLGKLEYLNLTDNQFQGKLSPNVS 162 (569)
Q Consensus 84 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 162 (569)
.+..|.++++|++|++++|.+....+..++.+++|++|++++|.+.+ .+|.. |.++++|++|++++|.+.+..+..+.
T Consensus 92 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~~~~~~~ 170 (570)
T 2z63_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLR 170 (570)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCEECGGGGH
T ss_pred CHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccceecHHHcc
Confidence 88899999999999999999985555578999999999999999875 35654 58999999999999999877777787
Q ss_pred CCCCC----CEEEccCCccccCCCcCcCCCCCCcEEEcccCcce-ecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCC
Q 047977 163 KLSNL----TVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFT-GQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCT 237 (569)
Q Consensus 163 ~~~~L----~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 237 (569)
.+++| +.+++++|.+....+..+... +|+.+++.++... ...+..+..++.++...+....+.. ..
T Consensus 171 ~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~--------~~ 241 (570)
T 2z63_A 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN--------EG 241 (570)
T ss_dssp HHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC--------CS
T ss_pred chhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC--------ch
Confidence 78888 899999999887777766655 8999999887432 1234456677777776665332211 11
Q ss_pred CCCEEEcccccceeccCccCcCCC--CCCEEeCcCC-cCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcE
Q 047977 238 NLSFLALAMNQLSGGLPLSLSNLS--RLNELGLSDN-FLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQY 314 (569)
Q Consensus 238 ~L~~l~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 314 (569)
+++.+ . ...+..++ .++.+.+.++ .+. ......+..+++|+.++++++.+. .+|..+..+ +|++
T Consensus 242 ~l~~~--~--------~~~~~~l~~l~l~~l~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~ 308 (570)
T 2z63_A 242 NLEKF--D--------KSALEGLCNLTIEEFRLAYLDYYL-DDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQH 308 (570)
T ss_dssp SCEEC--C--------TTTTGGGGGSEEEEEEEEETTEEE-SCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSE
T ss_pred hhhhc--c--------hhhhccccccchhhhhhhcchhhh-hhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccE
Confidence 11111 0 01111111 2344444444 222 222233556677777777777665 455556666 7777
Q ss_pred EecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccC--CccccCCCCCCEEEccCC
Q 047977 315 LFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTI--PPEIGSMASLVAFDVNTN 392 (569)
Q Consensus 315 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~ 392 (569)
|++++|.+. .+|. ..+++|++|++++|.+....+. ..+++|++|++++|.++... +..+..+++|+.|++++|
T Consensus 309 L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n 383 (570)
T 2z63_A 309 LELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383 (570)
T ss_dssp EEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSC
T ss_pred EeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCC
Confidence 777777766 4433 3567777777777776544332 56777777777777766432 455667778888888887
Q ss_pred cccccCCccccCCCCCCEEEccCCcccccCC-chhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcce-ee
Q 047977 393 QLHGELPENISRLVNLNKFSVFTNNFSGSIP-GDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFT-GS 470 (569)
Q Consensus 393 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~ 470 (569)
.+.+. +..+..+++|+.+++++|.+.+..+ ..+..++ +|++|++++|.+.+..+..+..+++|++|++++|.+. +.
T Consensus 384 ~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 461 (570)
T 2z63_A 384 GVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR-NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461 (570)
T ss_dssp SEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCT-TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred ccccc-cccccccCCCCEEEccCCccccccchhhhhcCC-CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcccc
Confidence 77743 3347778888888888888776655 3455554 8888888888887777777888888899999888886 46
Q ss_pred CCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCC
Q 047977 471 LPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIP 544 (569)
Q Consensus 471 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 544 (569)
.|..+..+++|++|++++|.+++..|..++.+++|++|++++|++++..+..|..+++|+.|++++|++++..|
T Consensus 462 ~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred chhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 77888888899999999998888778888888999999999998887777778888899999999988886544
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.6e-45 Score=381.88 Aligned_cols=490 Identities=18% Similarity=0.185 Sum_probs=262.0
Q ss_pred CCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEcc
Q 047977 21 NLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLC 100 (569)
Q Consensus 21 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 100 (569)
...+.+.+++.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+....+..|..+++|++|+++
T Consensus 6 ~~~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 82 (549)
T 2z81_A 6 ASGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82 (549)
T ss_dssp TTSEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred CCceEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECC
Confidence 3334455555555 3444333 566666666666665555556666666666666666655555555556666666666
Q ss_pred cccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcc-cccCCcCCCCCCCCCEEEccCCcccc
Q 047977 101 YNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQF-QGKLSPNVSKLSNLTVLRLATNKFSG 179 (569)
Q Consensus 101 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~ 179 (569)
+|.+.+..+..++.+++|++|++++|.+++......+.++++|++|++++|.. ....+..+..+++|++|++++|.+.
T Consensus 83 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~- 161 (549)
T 2z81_A 83 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR- 161 (549)
T ss_dssp TSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-
T ss_pred CCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc-
Confidence 66555444444555555555555555554211111234455555555555442 2122233444444444444444444
Q ss_pred CCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceecc---Ccc
Q 047977 180 PIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGL---PLS 256 (569)
Q Consensus 180 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~---~~~ 256 (569)
+..|..+..+++|++|+++.|.+.......+..+++|+.+++++|.+++.. ...
T Consensus 162 -----------------------~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 218 (549)
T 2z81_A 162 -----------------------NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPV 218 (549)
T ss_dssp -----------------------EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSS
T ss_pred -----------------------ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccch
Confidence 444444444444444444444432211111223344444444444433210 011
Q ss_pred CcCCCCCCEEeCcCCcCccccCc---cccCCCCCCcEEEccCCcceeeC------CccccCCCCCcEEecccccccccCC
Q 047977 257 LSNLSRLNELGLSDNFLSGEISA---NLIGNWTELESLQIQNNSFMGNI------PPEIGLLTKLQYLFLYRNHFSGPIP 327 (569)
Q Consensus 257 l~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~~~~~ 327 (569)
...+++|+.|+++++.+.+.... ..+..+++++.+++++|.+.+.. ...+..+++++.+.+.++.+....
T Consensus 219 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~- 297 (549)
T 2z81_A 219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY- 297 (549)
T ss_dssp CCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGG-
T ss_pred hhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhh-
Confidence 12234455555555444322211 11234455555555555544211 011233444455555444433110
Q ss_pred ccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccc-cCCCCCCEEEccCCcccccCC---cccc
Q 047977 328 SEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEI-GSMASLVAFDVNTNQLHGELP---ENIS 403 (569)
Q Consensus 328 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~---~~~~ 403 (569)
.+. ..+..+...++|+++++++|.+. .++..+ ..+++|++|++++|.+.+..+ ..+.
T Consensus 298 -~~~-----------------~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 358 (549)
T 2z81_A 298 -LFY-----------------DLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG 358 (549)
T ss_dssp -GSC-----------------CCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTT
T ss_pred -hcc-----------------cchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhh
Confidence 000 00111223345666666665554 333333 345666666666666554332 2245
Q ss_pred CCCCCCEEEccCCcccccCC--chhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCC
Q 047977 404 RLVNLNKFSVFTNNFSGSIP--GDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNL 481 (569)
Q Consensus 404 ~l~~L~~l~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 481 (569)
.+++|+.|++++|.+++..+ ..+..++ +|++|++++|++. .+|..+..+++|++|++++|+++ .++..+. ++|
T Consensus 359 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~-~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~--~~L 433 (549)
T 2z81_A 359 AWPSLQTLVLSQNHLRSMQKTGEILLTLK-NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTL 433 (549)
T ss_dssp SSTTCCEEECTTSCCCCHHHHHHHGGGCT-TCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSC--TTC
T ss_pred ccccCcEEEccCCcccccccchhhhhcCC-CCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhc--CCc
Confidence 56666666666666653321 2344444 7777777777776 56666666778888888888776 4444332 578
Q ss_pred cEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCC
Q 047977 482 NRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSN 561 (569)
Q Consensus 482 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 561 (569)
++|++++|.+++.. +.+++|++|++++|+++ .+|. ...+++|+.|++++|++++..|..++.+++|++|++++|
T Consensus 434 ~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 507 (549)
T 2z81_A 434 EVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507 (549)
T ss_dssp SEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred eEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCC
Confidence 88888888877542 47788888888888887 4554 467888888888888888877777888888888888888
Q ss_pred cCcccCC
Q 047977 562 ELTGKNS 568 (569)
Q Consensus 562 ~~~~~~~ 568 (569)
++.+..|
T Consensus 508 ~~~~~~~ 514 (549)
T 2z81_A 508 PWDCSCP 514 (549)
T ss_dssp CBCCCHH
T ss_pred CccCCCc
Confidence 8887654
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.7e-44 Score=374.18 Aligned_cols=482 Identities=18% Similarity=0.174 Sum_probs=327.8
Q ss_pred cCCCCCCcccCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCC
Q 047977 2 DLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLE 81 (569)
Q Consensus 2 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 81 (569)
|.++++++.+.+ .+. ++|++|++++|.+++..+.++.++++|++|++++|.+++..|.+|.++++|++|++++|.+.
T Consensus 11 ~~~~~~l~~ip~-~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 11 DGRSRSFTSIPS-GLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp ECTTSCCSSCCS-CCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred ECCCCccccccc-cCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC
Confidence 456778875444 443 79999999999999888899999999999999999999888888999999999999999999
Q ss_pred CCCCccCCCCCCCcEEEcccccccc-cCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcC
Q 047977 82 TPDWSKFSNMPSLTHLSLCYNELTL-EFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPN 160 (569)
Q Consensus 82 ~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 160 (569)
...+..|+.+++|++|++++|.+.. ..+..++.+++|++|++++|...+.++...|.++++|++|++++|.+.+..+..
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 167 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence 9888889999999999999999985 356788999999999999998555677666799999999999999999888889
Q ss_pred CCCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecC--C-ccccCCCCCCEEEcccCCCCcCCC----cCC
Q 047977 161 VSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQI--P-SSLGQLKNLQHLDLRMNALNSTIP----PEL 233 (569)
Q Consensus 161 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~-~~l~~l~~L~~L~l~~~~~~~~~~----~~~ 233 (569)
+..+++|++|+++++.........+..+++|+.|++++|.+.+.. + .....+++|+.|+++++.+.+..+ ..+
T Consensus 168 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~ 247 (549)
T 2z81_A 168 LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247 (549)
T ss_dssp TTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGG
T ss_pred hhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHh
Confidence 999999999999988765332222345777778887777765421 1 112335566666666665443211 122
Q ss_pred cCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceee-----CCccccC
Q 047977 234 GLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGN-----IPPEIGL 308 (569)
Q Consensus 234 ~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~ 308 (569)
..+++|+.+++++|.+.+..... ......+..+++++.+++.++.+... .+..+..
T Consensus 248 ~~~~~L~~l~l~~~~~~~~~~~~-------------------~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~ 308 (549)
T 2z81_A 248 RYILELSEVEFDDCTLNGLGDFN-------------------PSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL 308 (549)
T ss_dssp GGCTTCCEEEEESCEEECCSCCC-------------------CCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHH
T ss_pred hhhcccccccccccccccccccc-------------------ccchhhhhhhcccccccccccccchhhhcccchhhhhh
Confidence 34455555555555443211000 00011134556667777666554321 1111233
Q ss_pred CCCCcEEecccccccccCCccc-cCCCCCCEEEccCCccccccC---cccccCCCCCEEEcccCcccccCC--ccccCCC
Q 047977 309 LTKLQYLFLYRNHFSGPIPSEI-GKLTSLEKLDLSGNQLSGTIP---PTLWNLTNLLSLQLFFNNLSGTIP--PEIGSMA 382 (569)
Q Consensus 309 ~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~ 382 (569)
.++|+.|++++|.+. .+|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.++.... ..+..++
T Consensus 309 ~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 309 LEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387 (549)
T ss_dssp STTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT
T ss_pred cccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCC
Confidence 457777777777776 455444 467778888888777765442 235667777777777777753321 3466677
Q ss_pred CCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEc
Q 047977 383 SLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTV 462 (569)
Q Consensus 383 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 462 (569)
+|++|++++|.+. .+|..+..+++|+.+++++|.++. ++..+ +++|++|++++|.+++.. ..+++|++|++
T Consensus 388 ~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~---~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~L 458 (549)
T 2z81_A 388 NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI---PQTLEVLDVSNNNLDSFS----LFLPRLQELYI 458 (549)
T ss_dssp TCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS---CTTCSEEECCSSCCSCCC----CCCTTCCEEEC
T ss_pred CCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh---cCCceEEECCCCChhhhc----ccCChhcEEEC
Confidence 7777777777776 566666667777777777776652 22222 236666666666665321 34556666666
Q ss_pred cCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccc
Q 047977 463 NGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIG 517 (569)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 517 (569)
++|+++ .+|. ...+++|++|++++|.+++..+..++.+++|++|++++|++..
T Consensus 459 s~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 459 SRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp CSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCC
T ss_pred CCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccC
Confidence 666665 4443 3456666666666666666556666666666666666666543
No 15
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2e-42 Score=365.87 Aligned_cols=527 Identities=20% Similarity=0.174 Sum_probs=328.3
Q ss_pred EeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEcccccc
Q 047977 25 LDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNEL 104 (569)
Q Consensus 25 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 104 (569)
.+-++-+++ .+|..++ +++++|++++|.+++..+.+|.++++|++|++++|.+..+.+.+|.++++|++|++++|.+
T Consensus 36 ~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 36 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 344443444 3343333 3455555555555544444555555555555555555555555555555555555555555
Q ss_pred cccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCccccc-CCcCCCCCCCCCEEEccCCccccCCCc
Q 047977 105 TLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGK-LSPNVSKLSNLTVLRLATNKFSGPIPG 183 (569)
Q Consensus 105 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~ 183 (569)
....+..|..+++|++|++++|.++ .++...|.++++|++|++++|.+.+. .+..+..+++|++|++++|.+....+.
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 5433444555555555555555554 33333345555555555555555432 234445555555555555555444443
Q ss_pred CcCCCCC----CcEEEcccCcceecCCccccCCCCCCEEEcccCCCCc-CCCcCCcCCCCCCEEEcccccc------eec
Q 047977 184 DIGLMSN----IQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNS-TIPPELGLCTNLSFLALAMNQL------SGG 252 (569)
Q Consensus 184 ~l~~~~~----L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~------~~~ 252 (569)
.+..+.+ ...++++.+.+....+..+ ....++.+++.++.... .....+..+..++...+..+.. ...
T Consensus 192 ~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 270 (635)
T 4g8a_A 192 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 270 (635)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred cccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccc
Confidence 3332222 2234444444443222222 22233444444443211 1111223333333333221111 111
Q ss_pred cCccCcCCCCCCEEeCcCCcCc--cccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccc
Q 047977 253 LPLSLSNLSRLNELGLSDNFLS--GEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEI 330 (569)
Q Consensus 253 ~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 330 (569)
....+.....+....+..+... .......+....+++.+.+.++.+... ..+.....++.|++.+|.+....+
T Consensus 271 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~--- 345 (635)
T 4g8a_A 271 DKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT--- 345 (635)
T ss_dssp CTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC---
T ss_pred cccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCc---
Confidence 1122223333333333222111 011112245567788888887776543 235566788888888887764332
Q ss_pred cCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccc--cCCccccCCCCCCEEEccCCcccccCCccccCCCCC
Q 047977 331 GKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSG--TIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNL 408 (569)
Q Consensus 331 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 408 (569)
..++.|+.+.+..+..... .....+++|+.+++++|.+.. ..+..+..+.+++.+++..+... ..+..+..++++
T Consensus 346 ~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L 422 (635)
T 4g8a_A 346 LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQL 422 (635)
T ss_dssp CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTC
T ss_pred ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccc
Confidence 3456788888888876533 234567889999998887753 34455567788999999888776 344567788999
Q ss_pred CEEEccCCcccccCCch-hhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcce-eeCCccccCCCCCcEEEc
Q 047977 409 NKFSVFTNNFSGSIPGD-FGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFT-GSLPACMRNCSNLNRVRF 486 (569)
Q Consensus 409 ~~l~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l 486 (569)
+.+++.++......+.. +..+. +++.++++.|.+.+..+..+..+++++.|++++|.+. ...|..+..+++|++|+|
T Consensus 423 ~~l~l~~~~~~~~~~~~~~~~l~-~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~L 501 (635)
T 4g8a_A 423 EHLDFQHSNLKQMSEFSVFLSLR-NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 501 (635)
T ss_dssp CEEECTTSEEESTTSSCTTTTCT-TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred cchhhhhcccccccccccccccc-ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEEC
Confidence 99999888877665544 44444 9999999999998777778888899999999999754 356788999999999999
Q ss_pred cCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCC-CCCCeEeCcCCcCcc
Q 047977 487 DGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNL-TRLGVLSLDSNELTG 565 (569)
Q Consensus 487 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l~~n~~~~ 565 (569)
++|.+++..|..|+.+++|++|++++|++++..+..|+.+++|+.|++++|++++..|..++.+ ++|++|++++||++-
T Consensus 502 s~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 502 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 9999998889999999999999999999998888889999999999999999999999999988 689999999999974
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.5e-43 Score=364.31 Aligned_cols=455 Identities=20% Similarity=0.176 Sum_probs=303.6
Q ss_pred CEEECCCCCCCCCCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccC
Q 047977 71 RYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTD 150 (569)
Q Consensus 71 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 150 (569)
++++++++.+..++.. +. ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+ ..|.++++|++|++++
T Consensus 3 ~~l~ls~n~l~~ip~~-~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKD-LS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI-SVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCSSCCCS-CC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG-GGGTTCTTCCEEECCS
T ss_pred ceEecCCCCccccccc-cc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh-HHhhcccCCCEEecCC
Confidence 4678888877765432 32 778888888888776556677778888888888887774333 3457778888888888
Q ss_pred CcccccCCcCCCCCCCCCEEEccCCccccC-CCcCcCCCCCCcEEEcccCcceecCCccccCCCCC--CEEEcccCCC--
Q 047977 151 NQFQGKLSPNVSKLSNLTVLRLATNKFSGP-IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNL--QHLDLRMNAL-- 225 (569)
Q Consensus 151 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~-- 225 (569)
|.+.. ++.. .+++|++|++++|.+... .+..++.+++|++|++++|.+.+ ..+..+++| ++|++++|.+
T Consensus 79 N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~ 152 (520)
T 2z7x_B 79 NKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG 152 (520)
T ss_dssp SCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT
T ss_pred Cceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc
Confidence 77763 3333 677777777777777652 34566677777777777766653 234455555 6666666665
Q ss_pred CcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCc-------c
Q 047977 226 NSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNS-------F 298 (569)
Q Consensus 226 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~ 298 (569)
....+..+..+.. ....+.+.++.+.+.++...+..+++|+.+++++|. +
T Consensus 153 ~~~~~~~l~~l~~-----------------------~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 209 (520)
T 2z7x_B 153 EKEDPEGLQDFNT-----------------------ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYF 209 (520)
T ss_dssp SSCCTTTTTTCCE-----------------------EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHH
T ss_pred ccccccccccccc-----------------------ceEEEEeccCcchhhhhhhhhhcccceeecccccccccccccee
Confidence 3333333333221 111234444444444444445555666666666554 3
Q ss_pred eeeCCccccCCCCCcEEecccccccccCCccc---cCCCCCCEEEccCCccccccCccc-----ccCCCCCEEEcccCcc
Q 047977 299 MGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEI---GKLTSLEKLDLSGNQLSGTIPPTL-----WNLTNLLSLQLFFNNL 370 (569)
Q Consensus 299 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~ 370 (569)
.+.++ .+..+++|+.|++++|.+.+..+..+ ...++|++|++++|.+.+..+..+ .++++|+.+++++|.+
T Consensus 210 ~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~ 288 (520)
T 2z7x_B 210 LSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF 288 (520)
T ss_dssp HHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC
T ss_pred ecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce
Confidence 32222 45556666666666665543211111 013466667776666665555555 6666777777776665
Q ss_pred cccCC-ccccCC---CCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCcc-
Q 047977 371 SGTIP-PEIGSM---ASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSG- 445 (569)
Q Consensus 371 ~~~~~-~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~- 445 (569)
.++ ..+..+ .+|+.|++++|.+.... ....+++|+.+++++|.+++..|..+..++ +|++|++++|.+.+
T Consensus 289 --~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~l 363 (520)
T 2z7x_B 289 --GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLT-ELETLILQMNQLKEL 363 (520)
T ss_dssp --CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCS-SCCEEECCSSCCCBH
T ss_pred --ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCC-CCCEEEccCCccCcc
Confidence 222 222222 45777777777665321 125677788888888887776777776666 88888888888875
Q ss_pred -ccChhhhCCCCCcEEEccCCcceeeCCc-cccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCc
Q 047977 446 -ELPYELCSGFALEELTVNGNNFTGSLPA-CMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDW 523 (569)
Q Consensus 446 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l 523 (569)
.+|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+++..+..+. ++|++|++++|.++ .+|..+
T Consensus 364 ~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~ 440 (520)
T 2z7x_B 364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQV 440 (520)
T ss_dssp HHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGG
T ss_pred ccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhh
Confidence 4556788889999999999999864554 478889999999999999877776654 79999999999988 778888
Q ss_pred ccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCcccC
Q 047977 524 GECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGKN 567 (569)
Q Consensus 524 ~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 567 (569)
..+++|+.|++++|++++..+..+..+++|++|++++|+++++-
T Consensus 441 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 441 VKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred hcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccC
Confidence 89999999999999999544444889999999999999998753
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.9e-43 Score=368.50 Aligned_cols=433 Identities=18% Similarity=0.242 Sum_probs=210.5
Q ss_pred CCCcEEEcccccccccCCccccCCCCCCEEEcccCcc------cc------CCchhhhhcCCCCcEEeccCCcccccCCc
Q 047977 92 PSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKL------SG------LIPERLFTNLGKLEYLNLTDNQFQGKLSP 159 (569)
Q Consensus 92 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~------~~------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 159 (569)
.+++.|+++++.+.+.+|..++++++|++|++++|.+ .+ .+|... +..++ +++..+.+.+..+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~ 156 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPRE 156 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchh
Confidence 4677777777777777777777778888888877754 11 222221 22333 33333333222222
Q ss_pred CCC-------------------CCCCCCEEEcc--CCccccCCCcCcCCCCCCcEEEcccCcceec--------------
Q 047977 160 NVS-------------------KLSNLTVLRLA--TNKFSGPIPGDIGLMSNIQLVELFNNSFTGQ-------------- 204 (569)
Q Consensus 160 ~l~-------------------~~~~L~~L~l~--~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-------------- 204 (569)
.+. ....++.+.+. ++.+++ .|..++.+++|++|++++|.+.+.
T Consensus 157 ~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 235 (636)
T 4eco_A 157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA 235 (636)
T ss_dssp GSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred hHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchh
Confidence 111 01112222221 233433 344455555555555555555542
Q ss_pred ---CCcccc--CCCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEccccc-cee-ccCccCcCC------CCCCEEeCcCC
Q 047977 205 ---IPSSLG--QLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQ-LSG-GLPLSLSNL------SRLNELGLSDN 271 (569)
Q Consensus 205 ---~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~-~~~~~l~~~------~~L~~L~l~~~ 271 (569)
+|..+. .+++|++|++++|.+....+..++.+++|+++++++|. ++. ..+..+..+ ++|+.|++++|
T Consensus 236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred cccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence 555555 55555555555555555555555555555555555555 443 333333332 55555555555
Q ss_pred cCccccCc-cccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCC-CCEEEccCCccccc
Q 047977 272 FLSGEISA-NLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTS-LEKLDLSGNQLSGT 349 (569)
Q Consensus 272 ~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~ 349 (569)
.+. .++. ..++.+++|+.|++++|.+.+.+| .+..+++|+.|++++|.++ .+|..+..+++ |++|++++|.+. .
T Consensus 316 ~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~ 391 (636)
T 4eco_A 316 NLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-Y 391 (636)
T ss_dssp CCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-S
T ss_pred cCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-c
Confidence 555 3433 124555555555555555554444 4555555555555555555 44444555555 555555555555 3
Q ss_pred cCcccccCC--CCCEEEcccCcccccCCcccc-------CCCCCCEEEccCCcccccCCc-cccCCCCCCEEEccCCccc
Q 047977 350 IPPTLWNLT--NLLSLQLFFNNLSGTIPPEIG-------SMASLVAFDVNTNQLHGELPE-NISRLVNLNKFSVFTNNFS 419 (569)
Q Consensus 350 ~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~ 419 (569)
++..+...+ +|++|++++|.+.+..+..+. .+++|+.|++++|.+. .+|. .+..+++|+.|++++|.++
T Consensus 392 lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS
T ss_pred cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC
Confidence 444443322 555555555555544444444 4445555555555554 2222 2333455555555555554
Q ss_pred ccCCchhhccCC-------CCceEEcccCcCccccChhhh--CCCCCcEEEccCCcceeeCCccccCCCCCcEEEc----
Q 047977 420 GSIPGDFGKFSP-------SLINVSFSNNSFSGELPYELC--SGFALEELTVNGNNFTGSLPACMRNCSNLNRVRF---- 486 (569)
Q Consensus 420 ~~~~~~~~~~~~-------~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l---- 486 (569)
.+|........ +|+.|++++|.+. .+|..+. .+++|+.|++++|++++ +|..+.++++|++|++
T Consensus 471 -~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~ 547 (636)
T 4eco_A 471 -EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR 547 (636)
T ss_dssp -BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB
T ss_pred -CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc
Confidence 33332222111 4455555555544 3444443 44455555555555543 4444444555555555
Q ss_pred --cCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcce
Q 047977 487 --DGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKIS 540 (569)
Q Consensus 487 --~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 540 (569)
++|.+.+.+|..++.+++|++|++++|++ +.+|..+. ++|+.|++++|++.
T Consensus 548 ~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 22334444444444445555555555544 23344333 44555555555444
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-42 Score=357.87 Aligned_cols=451 Identities=19% Similarity=0.239 Sum_probs=242.3
Q ss_pred CEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEcccc
Q 047977 23 TFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYN 102 (569)
Q Consensus 23 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 102 (569)
++|+++++.++ .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|.+....+..|+.+++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 57888888888 4666555 78888888888888777778888888888888888888777777888888888888888
Q ss_pred cccccCCccccCCCCCCEEEcccCcccc-CCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCC--CEEEccCCcc--
Q 047977 103 ELTLEFPSFILTCRNLTYLDLSLNKLSG-LIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNL--TVLRLATNKF-- 177 (569)
Q Consensus 103 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~-- 177 (569)
.+. .+|.. .+++|++|++++|.+++ .+|. .|.++++|++|++++|.+.+ ..+..+++| +.|++++|.+
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~ 152 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICK-EFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG 152 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCG-GGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchh-hhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc
Confidence 877 44544 67788888888887764 2333 34777788888887777654 344555555 7777776665
Q ss_pred ccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcC-CCcCCcCCCCCCEEEccccc-------c
Q 047977 178 SGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNST-IPPELGLCTNLSFLALAMNQ-------L 249 (569)
Q Consensus 178 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~-------~ 249 (569)
....+..+..+.. + ...+++++|.+... ....+..+++|+.+++++|. +
T Consensus 153 ~~~~~~~l~~l~~-~----------------------~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 209 (520)
T 2z7x_B 153 EKEDPEGLQDFNT-E----------------------SLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYF 209 (520)
T ss_dssp SSCCTTTTTTCCE-E----------------------EEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHH
T ss_pred ccccccccccccc-c----------------------eEEEEeccCcchhhhhhhhhhcccceeecccccccccccccee
Confidence 3333433333321 1 11233333333221 12234445555555555543 2
Q ss_pred eeccCccCcCCCCCCEEeCcCCcCccccCcccc--CCCCCCcEEEccCCcceeeCCccc-----cCCCCCcEEecccccc
Q 047977 250 SGGLPLSLSNLSRLNELGLSDNFLSGEISANLI--GNWTELESLQIQNNSFMGNIPPEI-----GLLTKLQYLFLYRNHF 322 (569)
Q Consensus 250 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~ 322 (569)
.+..+ .+..+++|+.|+++++.+.+....... ...++|+.+++++|.+.+.+|..+ ..+++|+.+++++|.+
T Consensus 210 ~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~ 288 (520)
T 2z7x_B 210 LSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF 288 (520)
T ss_dssp HHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC
T ss_pred ecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce
Confidence 22222 344555566666555544422111100 012456666666665554455444 5555555555555555
Q ss_pred cccCC-ccccCC---CCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccc--
Q 047977 323 SGPIP-SEIGKL---TSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHG-- 396 (569)
Q Consensus 323 ~~~~~-~~l~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-- 396 (569)
.+| ..+..+ .+|+.|++++|.+.... .+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 289 --~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 364 (520)
T 2z7x_B 289 --GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS 364 (520)
T ss_dssp --CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH
T ss_pred --ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc
Confidence 222 222222 34555555555543221 11345555555555555554444455555555555555555543
Q ss_pred cCCccccCCCCCCEEEccCCcccccCCch-hhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccc
Q 047977 397 ELPENISRLVNLNKFSVFTNNFSGSIPGD-FGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACM 475 (569)
Q Consensus 397 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 475 (569)
.+|..+..+++|+.|++++|.+++.+|.. +..+ ++|+.|++++|.+++..+..+. ++|+.|++++|+++ .+|..+
T Consensus 365 ~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~ 440 (520)
T 2z7x_B 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT-KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQV 440 (520)
T ss_dssp HHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC-TTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGG
T ss_pred cchHHHhhCCCCCEEECCCCcCCcccccchhccC-ccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhh
Confidence 23334445555555555555554433332 2222 2444444444444433332221 34444444444444 344434
Q ss_pred cCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcc
Q 047977 476 RNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHF 515 (569)
Q Consensus 476 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 515 (569)
..+++|++|++++|.++...+..+..+++|++|++++|++
T Consensus 441 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 441 VKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCC
Confidence 4444444444444444422222244444444444444444
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.8e-41 Score=354.22 Aligned_cols=510 Identities=21% Similarity=0.184 Sum_probs=377.2
Q ss_pred CCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEc
Q 047977 20 SNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSL 99 (569)
Q Consensus 20 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 99 (569)
+++++|++++|.++.+.+.+|.++++|++|++++|++++..+.+|.++++|++|++++|.+.......|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 47899999999998777788999999999999999888777778889999999999999888888888889999999999
Q ss_pred ccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCC----CCEEEccCC
Q 047977 100 CYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSN----LTVLRLATN 175 (569)
Q Consensus 100 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~----L~~L~l~~~ 175 (569)
++|.+.+..+..++.+++|++|++++|.+.+......+..+++|++|++++|.+.+..+..+..+.+ ...++++.+
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 9998886666678889999999999998865433344578889999999999887666666554433 346777777
Q ss_pred ccccCCCcCcCCCCCCcEEEcccCcce-ecCCccccCCCCCCEEEcccCCC------CcCCCcCCcCCCCCCEEEccccc
Q 047977 176 KFSGPIPGDIGLMSNIQLVELFNNSFT-GQIPSSLGQLKNLQHLDLRMNAL------NSTIPPELGLCTNLSFLALAMNQ 248 (569)
Q Consensus 176 ~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~------~~~~~~~~~~~~~L~~l~l~~~~ 248 (569)
.+....+..+ ....++.+++.++... ...+..+..+..++...+..+.. .......+.....+....+..+.
T Consensus 212 ~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 212 PMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred cccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 7765444333 3345666777665432 12233455566666655543221 12222334444555554444332
Q ss_pred ce---eccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEeccccccccc
Q 047977 249 LS---GGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGP 325 (569)
Q Consensus 249 ~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 325 (569)
.. ......+....+++.+.+.++.+... .. +.....++.+++.++.+....+ ..++.|+.+.+.++.....
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~--~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~ 364 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERV-KD--FSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA 364 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEEC-GG--GGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB
T ss_pred hcccccchhhhhhhhcccccccccccccccc-cc--cccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCC
Confidence 21 12334456677888888888776532 22 4556788999998887764322 3467788888888876633
Q ss_pred CCccccCCCCCCEEEccCCccccc--cCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccC-Cccc
Q 047977 326 IPSEIGKLTSLEKLDLSGNQLSGT--IPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGEL-PENI 402 (569)
Q Consensus 326 ~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~ 402 (569)
.....+++|+.+++++|.+... .+..+..+.+|+.+++..+... .....+..++.|+.+++..+...... ...+
T Consensus 365 --~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~ 441 (635)
T 4g8a_A 365 --FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 441 (635)
T ss_dssp --CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTT
T ss_pred --cccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhcccccccccccc
Confidence 2345688999999999887532 3455667888999999988876 34556778889999999887766443 2457
Q ss_pred cCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCc-cccChhhhCCCCCcEEEccCCcceeeCCccccCCCCC
Q 047977 403 SRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFS-GELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNL 481 (569)
Q Consensus 403 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 481 (569)
..+.+++.++++.|.+....+..+...+ .++.|++++|... ...|..+..+++|++|++++|++++..|..|.++++|
T Consensus 442 ~~l~~l~~l~ls~n~l~~~~~~~~~~~~-~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L 520 (635)
T 4g8a_A 442 LSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 520 (635)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ccccccccccccccccccccccccccch-hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCC
Confidence 7888999999999998877777776666 9999999998743 3466677888999999999999987778889999999
Q ss_pred cEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccC-CCCCEEECCCCcce
Q 047977 482 NRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGEC-RNLSNLQLDRNKIS 540 (569)
Q Consensus 482 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~n~~~ 540 (569)
++|+|++|.+++..+..|+.+++|++|++++|++++..|..++.+ ++|+.|++++|++.
T Consensus 521 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 521 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 999999999988888889999999999999999998888888887 68999999988665
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.5e-43 Score=367.02 Aligned_cols=455 Identities=18% Similarity=0.278 Sum_probs=304.4
Q ss_pred CCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCC------C-----CCCCcEEEcccccccccCCccc
Q 047977 44 SELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFS------N-----MPSLTHLSLCYNELTLEFPSFI 112 (569)
Q Consensus 44 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~------~-----~~~L~~L~l~~~~~~~~~~~~l 112 (569)
.+++.|+++++.+.+.+|.++.++++|++|++++|.+.... ..++ . +.+|+ ++++++.+.+..+..+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~-~~~~~~~~~~~~~~~~~~~l~-l~l~~~~l~~~~~~~~ 158 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNE-RLFGPKGISANMSDEQKQKMR-MHYQKTFVDYDPREDF 158 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTC-CSBSTTSBCTTCCHHHHHHHH-THHHHHHTCCCGGGGS
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCC-ccccccccccCchHHHHHHHH-hhHHHhhhccCchhhH
Confidence 57899999999999889999999999999999988542111 0011 1 22344 5555555443333332
Q ss_pred cCC-CCCCEEEcccCccccCCchhhhhcCCCCcEEecc--CCcccccCCcCCCCCCCCCEEEccCCccccC---------
Q 047977 113 LTC-RNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLT--DNQFQGKLSPNVSKLSNLTVLRLATNKFSGP--------- 180 (569)
Q Consensus 113 ~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--------- 180 (569)
..+ ..+..+++....+. ......++.+.+. .|.+++ +|..++++++|++|++++|.+++.
T Consensus 159 ~~~~~~l~~~~l~~~~~~-------~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 230 (636)
T 4eco_A 159 SDLIKDCINSDPQQKSIK-------KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230 (636)
T ss_dssp CHHHHHHHHHCTTSCCCC-------CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred HHHHHHHhhcCccccccc-------cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccccc
Confidence 210 01111111100000 0001111111111 344544 555566666666666666665542
Q ss_pred --------CCcCcC--CCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCC-CCc-CCCcCCcCC------CCCCEE
Q 047977 181 --------IPGDIG--LMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNA-LNS-TIPPELGLC------TNLSFL 242 (569)
Q Consensus 181 --------~~~~l~--~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~~~~~------~~L~~l 242 (569)
.|..+. .+++|++|++++|.+.+.+|..+..+++|++|++++|. +.. ..+..++.+ ++|+++
T Consensus 231 ~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L 310 (636)
T 4eco_A 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310 (636)
T ss_dssp TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE
Confidence 555555 66666666666666666666666666777777777666 554 344444443 677777
Q ss_pred EcccccceeccCc--cCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCC-CcEEeccc
Q 047977 243 ALAMNQLSGGLPL--SLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTK-LQYLFLYR 319 (569)
Q Consensus 243 ~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~ 319 (569)
++++|.++ .++. .+..+++|+.|++++|.+.+.++ .+..+++|+.|++++|.+. .+|..+..+++ |++|++++
T Consensus 311 ~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 311 YIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp ECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCS
T ss_pred ECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccC
Confidence 77777776 5555 66777777777777777776666 3667777888888877777 66666777777 88888888
Q ss_pred ccccccCCccccCCC--CCCEEEccCCccccccCcccc-------cCCCCCEEEcccCcccccCCccccCCCCCCEEEcc
Q 047977 320 NHFSGPIPSEIGKLT--SLEKLDLSGNQLSGTIPPTLW-------NLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVN 390 (569)
Q Consensus 320 ~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 390 (569)
|.++ .+|..+...+ +|++|++++|.+....+..+. .+++|++|++++|.++......+..+++|+.|+++
T Consensus 387 N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls 465 (636)
T 4eco_A 387 NKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLM 465 (636)
T ss_dssp SCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECC
T ss_pred CcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECC
Confidence 8777 6666665543 788888888887766666666 66788888888888774433445567888888888
Q ss_pred CCcccccCCcc-ccC-------CCCCCEEEccCCcccccCCchhh--ccCCCCceEEcccCcCccccChhhhCCCCCcEE
Q 047977 391 TNQLHGELPEN-ISR-------LVNLNKFSVFTNNFSGSIPGDFG--KFSPSLINVSFSNNSFSGELPYELCSGFALEEL 460 (569)
Q Consensus 391 ~~~~~~~~~~~-~~~-------l~~L~~l~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 460 (569)
+|.+. .+|.. +.. +++|+.|++++|.++ .+|..+. .++ +|+.|++++|++.+ +|..+..+++|+.|
T Consensus 466 ~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~-~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L 541 (636)
T 4eco_A 466 GNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLP-YLVGIDLSYNSFSK-FPTQPLNSSTLKGF 541 (636)
T ss_dssp SSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCT-TCCEEECCSSCCSS-CCCGGGGCSSCCEE
T ss_pred CCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCC-CcCEEECCCCCCCC-cChhhhcCCCCCEE
Confidence 88877 44433 222 238889999998888 6777776 555 89999999999886 78888889999999
Q ss_pred Ec------cCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCC
Q 047977 461 TV------NGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEIS 520 (569)
Q Consensus 461 ~l------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 520 (569)
++ ++|++.+..|..+.++++|++|++++|.+. .+|..+. ++|++|++++|++.....
T Consensus 542 ~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 542 GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp ECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred ECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccH
Confidence 99 567778789999999999999999999994 6776654 899999999998875443
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.9e-41 Score=355.98 Aligned_cols=345 Identities=18% Similarity=0.284 Sum_probs=197.4
Q ss_pred ccCCCCCCCcEEEcccccccc-----------------cCCcccc--CCCCCCEEEcccCccccCCchhhhhcCCCCcEE
Q 047977 86 SKFSNMPSLTHLSLCYNELTL-----------------EFPSFIL--TCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYL 146 (569)
Q Consensus 86 ~~~~~~~~L~~L~l~~~~~~~-----------------~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 146 (569)
..|+.+++|++|++++|.+.+ .+|..++ .+++|++|++++|.+.+.+|.. +.++++|++|
T Consensus 442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L 520 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSL 520 (876)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEE
T ss_pred HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEE
Confidence 345555556666665555554 1555544 5666666666666555555533 3555666666
Q ss_pred eccCCc-ccc-cCCcC-------CCCCCCCCEEEccCCccccCCCc--CcCCCCCCcEEEcccCcceecCCccccCCCCC
Q 047977 147 NLTDNQ-FQG-KLSPN-------VSKLSNLTVLRLATNKFSGPIPG--DIGLMSNIQLVELFNNSFTGQIPSSLGQLKNL 215 (569)
Q Consensus 147 ~l~~~~-~~~-~~~~~-------l~~~~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 215 (569)
++++|+ +.+ .+|.. +..+++|+.|++++|.+. ..+. .+..+++|+.|++++|.+. .+| .+..+++|
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L 597 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKL 597 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEE
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcc
Confidence 666665 443 23322 223346666666666665 4444 5566666666666666665 455 55666666
Q ss_pred CEEEcccCCCCcCCCcCCcCCCC-CCEEEcccccceeccCccCcCCC--CCCEEeCcCCcCccccCccc--cC--CCCCC
Q 047977 216 QHLDLRMNALNSTIPPELGLCTN-LSFLALAMNQLSGGLPLSLSNLS--RLNELGLSDNFLSGEISANL--IG--NWTEL 288 (569)
Q Consensus 216 ~~L~l~~~~~~~~~~~~~~~~~~-L~~l~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~--~~--~~~~L 288 (569)
++|++++|.+. ..+..+..+++ |+.|++++|.++ .++..+...+ +|+.|++++|.+.+.++... .. ..++|
T Consensus 598 ~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L 675 (876)
T 4ecn_A 598 TDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675 (876)
T ss_dssp SEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE
T ss_pred eEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc
Confidence 66666666665 44455666666 666666666665 4444444433 36667777666654333210 11 33467
Q ss_pred cEEEccCCcceeeCCcc-ccCCCCCcEEecccccccccCCccccC--------CCCCCEEEccCCccccccCcccc--cC
Q 047977 289 ESLQIQNNSFMGNIPPE-IGLLTKLQYLFLYRNHFSGPIPSEIGK--------LTSLEKLDLSGNQLSGTIPPTLW--NL 357 (569)
Q Consensus 289 ~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~--------~~~L~~L~l~~~~~~~~~~~~~~--~~ 357 (569)
+.|++++|.+. .+|.. +..+++|+.|++++|.+. .+|..+.. +++|++|++++|.+. .++..+. .+
T Consensus 676 ~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l 752 (876)
T 4ecn_A 676 STVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTL 752 (876)
T ss_dssp EEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTC
T ss_pred CEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccC
Confidence 77777777776 34433 336677777777777776 44433222 237888888888777 5566665 77
Q ss_pred CCCCEEEcccCcccccCCccccCCCCCCEEEccC------CcccccCCccccCCCCCCEEEccCCcccccCCchhhccCC
Q 047977 358 TNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNT------NQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSP 431 (569)
Q Consensus 358 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~ 431 (569)
++|+.|++++|.+++ ++..+..+++|+.|++++ |.+.+.+|..+..+++|+.|++++|.+ +.+|..+. +
T Consensus 753 ~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~---~ 827 (876)
T 4ecn_A 753 PYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT---P 827 (876)
T ss_dssp TTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC---S
T ss_pred CCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc---C
Confidence 788888888887774 566677777777777766 444444444454555555555555544 33443322 2
Q ss_pred CCceEEcccCcCc
Q 047977 432 SLINVSFSNNSFS 444 (569)
Q Consensus 432 ~L~~L~l~~~~~~ 444 (569)
+|+.|++++|++.
T Consensus 828 ~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 828 QLYILDIADNPNI 840 (876)
T ss_dssp SSCEEECCSCTTC
T ss_pred CCCEEECCCCCCC
Confidence 4444444444443
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.1e-40 Score=350.42 Aligned_cols=354 Identities=20% Similarity=0.252 Sum_probs=279.8
Q ss_pred CcceecCCccccCCCCCCEEEcccCCCCc-----------------CCCcCCc--CCCCCCEEEcccccceeccCccCcC
Q 047977 199 NSFTGQIPSSLGQLKNLQHLDLRMNALNS-----------------TIPPELG--LCTNLSFLALAMNQLSGGLPLSLSN 259 (569)
Q Consensus 199 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----------------~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~l~~ 259 (569)
|.+.+ +|..+..+++|++|++++|.+.. ..|..++ .+++|+.|++++|.+....+..+.+
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 55665 78888888888888888888876 2666666 8888999999888888788888888
Q ss_pred CCCCCEEeCcCCc-Ccc-ccCcc------ccCCCCCCcEEEccCCcceeeCCc--cccCCCCCcEEecccccccccCCcc
Q 047977 260 LSRLNELGLSDNF-LSG-EISAN------LIGNWTELESLQIQNNSFMGNIPP--EIGLLTKLQYLFLYRNHFSGPIPSE 329 (569)
Q Consensus 260 ~~~L~~L~l~~~~-~~~-~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~ 329 (569)
+++|+.|++++|. +.+ .++.. .+..+++|+.|++++|.+. .+|. .+..+++|+.|++++|.++ .+| .
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~ 590 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-A 590 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-h
Confidence 8899999998887 665 44432 2345568999999988888 6777 7888889999999998888 676 7
Q ss_pred ccCCCCCCEEEccCCccccccCcccccCCC-CCEEEcccCcccccCCccccCCCC--CCEEEccCCcccccCCcc---cc
Q 047977 330 IGKLTSLEKLDLSGNQLSGTIPPTLWNLTN-LLSLQLFFNNLSGTIPPEIGSMAS--LVAFDVNTNQLHGELPEN---IS 403 (569)
Q Consensus 330 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~~~~~~~~---~~ 403 (569)
+..+++|+.|++++|.+. .++..+..+++ |+.|++++|.++ .++..+...+. |+.|++++|.+.+.+|.. +.
T Consensus 591 ~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~ 668 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668 (876)
T ss_dssp CCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred hcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence 888889999999999888 67777888888 999999999887 66666665544 889999998887654422 22
Q ss_pred --CCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCC--------CCCcEEEccCCcceeeCCc
Q 047977 404 --RLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSG--------FALEELTVNGNNFTGSLPA 473 (569)
Q Consensus 404 --~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--------~~L~~L~l~~~~~~~~~~~ 473 (569)
.+++|+.|++++|.++ .+|..+....++|+.|++++|.+. .+|..+... ++|+.|++++|+++ .+|.
T Consensus 669 ~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~ 745 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSD 745 (876)
T ss_dssp TCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCG
T ss_pred cccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchH
Confidence 3458889999999888 566666533348999999999887 666555443 28999999999888 7777
Q ss_pred ccc--CCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcC------CcccccCCcCcccCCCCCEEECCCCcceecCCc
Q 047977 474 CMR--NCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSG------NHFIGEISPDWGECRNLSNLQLDRNKISGGIPA 545 (569)
Q Consensus 474 ~l~--~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~------~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 545 (569)
.+. .+++|+.|+|++|.+.+ +|..++.+++|+.|++++ |.+.+.+|..+..+++|+.|++++|++ +.+|.
T Consensus 746 ~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~ 823 (876)
T 4ecn_A 746 DFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDE 823 (876)
T ss_dssp GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred HhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCH
Confidence 776 88999999999998886 677788899999998876 677778888899999999999999998 56777
Q ss_pred CccCCCCCCeEeCcCCcCcc
Q 047977 546 ELGNLTRLGVLSLDSNELTG 565 (569)
Q Consensus 546 ~l~~l~~L~~L~l~~n~~~~ 565 (569)
.+. ++|+.|++++|++..
T Consensus 824 ~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 824 KLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp CCC--SSSCEEECCSCTTCE
T ss_pred hhc--CCCCEEECCCCCCCc
Confidence 765 689999999998854
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.7e-40 Score=340.89 Aligned_cols=458 Identities=17% Similarity=0.153 Sum_probs=285.4
Q ss_pred CCCCEEECCCCCCCCCCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEe
Q 047977 68 RKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLN 147 (569)
Q Consensus 68 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 147 (569)
...++++++++.+..++.. +. ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+ ..|.++++|++|+
T Consensus 31 ~~~~~l~ls~~~L~~ip~~-~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~ 106 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKD-LP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF-HVFLFNQDLEYLD 106 (562)
T ss_dssp --CCEEECTTSCCCSCCTT-SC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT-TTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCCCccCCCC-CC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH-HHhCCCCCCCEEE
Confidence 3446777777777664432 22 677777777777765555667777777777777777663323 3346677777777
Q ss_pred ccCCcccccCCcCCCCCCCCCEEEccCCccccCC-CcCcCCCCCCcEEEcccCcceecCCccccCCCCC--CEEEcccCC
Q 047977 148 LTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPI-PGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNL--QHLDLRMNA 224 (569)
Q Consensus 148 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~ 224 (569)
+++|.+.. ++.. .+++|++|++++|.+.... +..+..+++|++|+++++.+... .+..+++| ++|++++|.
T Consensus 107 Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 107 VSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp CTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESS
T ss_pred CCCCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccc
Confidence 77776663 3333 5667777777776665432 34556666666666666655432 23333333 666666555
Q ss_pred C--CcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcc----
Q 047977 225 L--NSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSF---- 298 (569)
Q Consensus 225 ~--~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~---- 298 (569)
+ ....+..+..+.. + .+ .+.++++.+.+.++...+..+++|+.+++++|..
T Consensus 181 l~~~~~~~~~l~~l~~-~---------------------~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 237 (562)
T 3a79_B 181 YHIKGGETESLQIPNT-T---------------------VL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR 237 (562)
T ss_dssp CCCCSSSCCEEEECCE-E---------------------EE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHH
T ss_pred ccccccCcccccccCc-c---------------------eE-EEEecCccchhhhhhhcccccceEEEecccccccccch
Confidence 5 3333333322210 0 11 2344444444444444455566666666665531
Q ss_pred eeeCCccccCCCCCcEEeccccccccc----CCccccCCCCCCEEEccCCccccccCccc-----ccCCCCCEEEcccCc
Q 047977 299 MGNIPPEIGLLTKLQYLFLYRNHFSGP----IPSEIGKLTSLEKLDLSGNQLSGTIPPTL-----WNLTNLLSLQLFFNN 369 (569)
Q Consensus 299 ~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~ 369 (569)
.......+..++.|+.+++.++.+.+. .+.. ...++|++|++++|.+.+.++..+ .+++.|+.+++..+.
T Consensus 238 l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~ 316 (562)
T 3a79_B 238 LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQV 316 (562)
T ss_dssp HHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECC
T ss_pred HHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccce
Confidence 001112344556666666665544321 1111 122366677777666664555444 344444444444444
Q ss_pred ccccCC-cccc---CCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCcc
Q 047977 370 LSGTIP-PEIG---SMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSG 445 (569)
Q Consensus 370 ~~~~~~-~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 445 (569)
+ .++ ..+. ...+++.+++++|.+.... ....+++|+.+++++|.+++..|..+..++ +|++|++++|.+.+
T Consensus 317 ~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~ 391 (562)
T 3a79_B 317 F--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLK-RLQTLILQRNGLKN 391 (562)
T ss_dssp C--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCS-SCCEEECCSSCCCB
T ss_pred e--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccC-CCCEEECCCCCcCC
Confidence 3 111 1111 1246777777777765221 125677888888888888877777777766 88888888888874
Q ss_pred --ccChhhhCCCCCcEEEccCCcceeeCCc-cccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcC
Q 047977 446 --ELPYELCSGFALEELTVNGNNFTGSLPA-CMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPD 522 (569)
Q Consensus 446 --~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 522 (569)
.++..+..+++|+.|++++|.+++.+|. .+..+++|++|++++|.+++..+..+. ++|++|++++|.++ .+|..
T Consensus 392 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~ 468 (562)
T 3a79_B 392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKD 468 (562)
T ss_dssp TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTT
T ss_pred cccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChh
Confidence 2345677889999999999999864554 578899999999999999876665543 79999999999988 67777
Q ss_pred cccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCcccC
Q 047977 523 WGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGKN 567 (569)
Q Consensus 523 l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 567 (569)
+..+++|+.|++++|++++..+..+..+++|++|++++|++.++.
T Consensus 469 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 469 VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp TTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred hcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence 779999999999999999544444899999999999999998764
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.4e-39 Score=335.48 Aligned_cols=459 Identities=19% Similarity=0.205 Sum_probs=213.6
Q ss_pred CCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEc
Q 047977 20 SNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSL 99 (569)
Q Consensus 20 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 99 (569)
...++++++++.++. +|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+....+..|.++++|++|++
T Consensus 31 ~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 31 ELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp --CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 334556666655552 444333 45566666666555444455555566666666666555555555555555555555
Q ss_pred ccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCC--CEEEccCCcc
Q 047977 100 CYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNL--TVLRLATNKF 177 (569)
Q Consensus 100 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~ 177 (569)
++|.+. .+|.. .+++|++|++++|.+++.-....|.++++|++|++++|.+... .+..+++| +.|++++|.+
T Consensus 108 s~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 108 SHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp TTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred CCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence 555555 33333 4555555555555554311112235555555555555554431 22223333 5555555444
Q ss_pred ccCCCcCcCCCCCCcEEEcccCcceecCCccccCCC-CCCEEEcccCCCCcCCC-cCCcCCCCCCEEEcccccce----e
Q 047977 178 SGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLK-NLQHLDLRMNALNSTIP-PELGLCTNLSFLALAMNQLS----G 251 (569)
Q Consensus 178 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~----~ 251 (569)
.. ....+..+..+. ..-.+++++|.+....+ ..+..+++|+.++++++... .
T Consensus 182 ~~----------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~ 239 (562)
T 3a79_B 182 HI----------------------KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLM 239 (562)
T ss_dssp CC----------------------CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHH
T ss_pred cc----------------------cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHH
Confidence 00 333333333322 01123344444332211 12334455555555544210 0
Q ss_pred ccCccCcCCCCCCEEeCcCCcCccccCccc--cCCCCCCcEEEccCCcceeeCCccc-----cCCCCCcEEecccccccc
Q 047977 252 GLPLSLSNLSRLNELGLSDNFLSGEISANL--IGNWTELESLQIQNNSFMGNIPPEI-----GLLTKLQYLFLYRNHFSG 324 (569)
Q Consensus 252 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~ 324 (569)
.....+..++.|+.+.+.++.+.+...... ....++|+.|++++|.+.+.+|..+ ..++.|+.+++..+.+
T Consensus 240 ~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-- 317 (562)
T 3a79_B 240 TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-- 317 (562)
T ss_dssp HHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--
T ss_pred HHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--
Confidence 111223444555555555444332111000 1112356666666665554444443 3333333333333333
Q ss_pred cCC-cccc---CCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccc--cC
Q 047977 325 PIP-SEIG---KLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHG--EL 398 (569)
Q Consensus 325 ~~~-~~l~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~ 398 (569)
.+| ..+. ...+|++|++++|.+.... ....+++|++|++++|.+++..+..+..+++|+.|++++|.+.+ .+
T Consensus 318 ~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 395 (562)
T 3a79_B 318 LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKV 395 (562)
T ss_dssp SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHH
T ss_pred ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccc
Confidence 111 1111 1134666666665553221 11445556666666666555455555555666666666655553 12
Q ss_pred CccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCC
Q 047977 399 PENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNC 478 (569)
Q Consensus 399 ~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 478 (569)
+..+..+++|+.+++++|.+++.+|.......++|++|++++|.+++..+..+. ++|+.|++++|+++ .+|..+.++
T Consensus 396 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l 472 (562)
T 3a79_B 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHL 472 (562)
T ss_dssp HHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSS
T ss_pred hhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCC
Confidence 234555556666666666555434433222223555555555555443333222 45555555555555 444444455
Q ss_pred CCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCccc
Q 047977 479 SNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFI 516 (569)
Q Consensus 479 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 516 (569)
++|++|++++|.++...+..++.+++|++|++++|++.
T Consensus 473 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 473 QALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred CCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 55555555555555322223555555555555555544
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.4e-38 Score=318.97 Aligned_cols=382 Identities=19% Similarity=0.166 Sum_probs=279.5
Q ss_pred EEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCC-cCCCcCCcCCCCCCEEEcccc
Q 047977 169 VLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALN-STIPPELGLCTNLSFLALAMN 247 (569)
Q Consensus 169 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~ 247 (569)
.++.+++.+.. .|. -.+++++|++++|.+.+..+..+..+++|++|++++|.+. ...+..++.+++|++|++++|
T Consensus 14 ~~~c~~~~l~~-lp~---l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLHQ-VPE---LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCSS-CCC---CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCccc-CCC---CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 45566655543 233 2367888888888887777777888888888888888775 344566777888888888888
Q ss_pred cceeccCccCcCCCCCCEEeCcCCcCccccC-ccccCCCCCCcEEEccCCcceeeCCcc-ccCCCCCcEEeccccccccc
Q 047977 248 QLSGGLPLSLSNLSRLNELGLSDNFLSGEIS-ANLIGNWTELESLQIQNNSFMGNIPPE-IGLLTKLQYLFLYRNHFSGP 325 (569)
Q Consensus 248 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~ 325 (569)
.++...+..+.++++|+.|++++|.+.+..+ ...+..+++|+.|++++|.+.+..|.. +..+++|++|++++|.+.+.
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 8777767777777888888888877764322 233666777777777777776555544 66777777777777777666
Q ss_pred CCccccCC--CCCCEEEccCCccccccCcc--------cccCCCCCEEEcccCcccccCCccccC---CCCCCEEEccCC
Q 047977 326 IPSEIGKL--TSLEKLDLSGNQLSGTIPPT--------LWNLTNLLSLQLFFNNLSGTIPPEIGS---MASLVAFDVNTN 392 (569)
Q Consensus 326 ~~~~l~~~--~~L~~L~l~~~~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~L~~L~l~~~ 392 (569)
.+..+..+ .+|+.|++++|.+....+.. +..+++|++|++++|.+++..+..+.. .++++.+++++|
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence 55555544 56677777777665433222 224456666666666665443333322 256666666665
Q ss_pred cccccCCccccCCCCCCEEEccCCcccccCCchhhcc-CCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeC
Q 047977 393 QLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKF-SPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSL 471 (569)
Q Consensus 393 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 471 (569)
...+... ..+.+....+..+..+ .++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..
T Consensus 250 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 315 (455)
T 3v47_A 250 YNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID 315 (455)
T ss_dssp TTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred ccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC
Confidence 5442210 0111111112222222 248999999999999888888999999999999999999888
Q ss_pred CccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCC
Q 047977 472 PACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLT 551 (569)
Q Consensus 472 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~ 551 (569)
+..+.++++|++|++++|.+.+..+..++.+++|++|++++|.+.+..|..|..+++|+.|++++|++++..+..++.++
T Consensus 316 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 395 (455)
T 3v47_A 316 DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLT 395 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCC
Confidence 88999999999999999999988899999999999999999999988899999999999999999999987777889999
Q ss_pred CCCeEeCcCCcCcccCC
Q 047977 552 RLGVLSLDSNELTGKNS 568 (569)
Q Consensus 552 ~L~~L~l~~n~~~~~~~ 568 (569)
+|++|++++|++++..|
T Consensus 396 ~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 396 SLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCCEEECCSSCBCCCTT
T ss_pred cccEEEccCCCcccCCC
Confidence 99999999999999887
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.5e-36 Score=306.87 Aligned_cols=365 Identities=17% Similarity=0.143 Sum_probs=191.5
Q ss_pred CCCcEEeccCCcccccCCcCCCCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEc
Q 047977 141 GKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDL 220 (569)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 220 (569)
+++++|++++|.+.+..+..+..+++|++|++++|.+... ..+..+..+++|++|++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~-----------------------i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV-----------------------IRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCE-----------------------ECTTTTTTCTTCCEEEC
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccce-----------------------ECcccccccccCCEEeC
Confidence 4555555555555544455555555555555555544311 12233444445555555
Q ss_pred ccCCCCcCCCcCCcCCCCCCEEEcccccceeccC--ccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcc
Q 047977 221 RMNALNSTIPPELGLCTNLSFLALAMNQLSGGLP--LSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSF 298 (569)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 298 (569)
++|.+....+..++.+++|++|++++|.+++..+ ..+..+++|+.|++++|.+.+..+...+..+++|+.|++++|.+
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 5554444444444555555555555554443222 22455556666666666655443444455666666666666666
Q ss_pred eeeCCccccCC--CCCcEEecccccccccCCcc--------ccCCCCCCEEEccCCccccccCcccccC---CCCCEEEc
Q 047977 299 MGNIPPEIGLL--TKLQYLFLYRNHFSGPIPSE--------IGKLTSLEKLDLSGNQLSGTIPPTLWNL---TNLLSLQL 365 (569)
Q Consensus 299 ~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~--------l~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l 365 (569)
.+..+..+..+ ++++.+++++|.+.+..+.. +..+++|++|++++|.+....+..+... ++|+.+++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 55555544443 56667777777666433222 2345677788888877766555555433 77788888
Q ss_pred ccCcccccCCccccCCCCCCEEEccCCcccccCCcccc--CCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcC
Q 047977 366 FFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENIS--RLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSF 443 (569)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 443 (569)
++|....... ....++. ..+..+. ..++|+.+++++|.+++..+..+..++ +|++|++++|.+
T Consensus 247 ~~~~~~~~~~-~~~~~~~-------------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l 311 (455)
T 3v47_A 247 SNSYNMGSSF-GHTNFKD-------------PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT-DLEQLTLAQNEI 311 (455)
T ss_dssp TTCTTTSCCT-TCCSSCC-------------CCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT-TCCEEECTTSCC
T ss_pred cccccccccc-chhhhcc-------------CcccccccccccCceEEEecCccccccchhhcccCC-CCCEEECCCCcc
Confidence 7776542110 0000000 0000011 124455555555555544444444444 555555555555
Q ss_pred ccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCc
Q 047977 444 SGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDW 523 (569)
Q Consensus 444 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l 523 (569)
.+..+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..++.+++|++|++++|.+++..+..+
T Consensus 312 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 391 (455)
T 3v47_A 312 NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF 391 (455)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred cccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHh
Confidence 54444455555555666665555554445555555666666666665555555555556666666666665554444445
Q ss_pred ccCCCCCEEECCCCcceecC
Q 047977 524 GECRNLSNLQLDRNKISGGI 543 (569)
Q Consensus 524 ~~~~~L~~L~l~~n~~~~~~ 543 (569)
+.+++|+.|++++|+++...
T Consensus 392 ~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 392 DRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp TTCTTCCEEECCSSCBCCCT
T ss_pred ccCCcccEEEccCCCcccCC
Confidence 55566666666666555433
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2e-35 Score=295.41 Aligned_cols=394 Identities=23% Similarity=0.272 Sum_probs=156.4
Q ss_pred CCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCC-------------cEEeccCCcccccC
Q 047977 91 MPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKL-------------EYLNLTDNQFQGKL 157 (569)
Q Consensus 91 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L-------------~~L~l~~~~~~~~~ 157 (569)
..+|++|+++++.+ +.+|..++++++|++|++++|.+.+.+|..+ ..+.+| ++|+++++.+.+ +
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l 86 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSS-L 86 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence 47888888888888 4888888888889999988888877777654 555544 566666665543 2
Q ss_pred CcCCCCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCC
Q 047977 158 SPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCT 237 (569)
Q Consensus 158 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 237 (569)
+. ..++|++|++++|.+.+ .+. ..++|+.|++++|.+.+ ++.. .++|++|++++|.+.. .+ .++.++
T Consensus 87 p~---~~~~L~~L~l~~n~l~~-lp~---~~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~ 153 (454)
T 1jl5_A 87 PE---LPPHLESLVASCNSLTE-LPE---LPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSS 153 (454)
T ss_dssp CS---CCTTCSEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCT
T ss_pred CC---CcCCCCEEEccCCcCCc-ccc---ccCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCC
Confidence 22 12456666666655543 222 12455555555555442 1111 1455555555555543 22 355555
Q ss_pred CCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEec
Q 047977 238 NLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFL 317 (569)
Q Consensus 238 ~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 317 (569)
+|+++++++|.++. .+.. .++|+.|++++|.+.+ ++. ++.+++|+.+++++|.+.+ +|.. .++|++|++
T Consensus 154 ~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~~--~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l 222 (454)
T 1jl5_A 154 FLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LPE--LQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVA 222 (454)
T ss_dssp TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCC--CTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEEC
T ss_pred CCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Ccc--ccCCCCCCEEECCCCcCCc-CCCC---cCcccEEEC
Confidence 55555555555442 1211 1345555555554442 221 4444455555555444432 2211 134444444
Q ss_pred ccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCccccc
Q 047977 318 YRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGE 397 (569)
Q Consensus 318 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 397 (569)
++|.+. .+| . +..+++|++|++++|.+++ ++. .+++|+.|++++|.+.+
T Consensus 223 ~~n~l~-~lp-~------------------------~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~- 271 (454)
T 1jl5_A 223 GNNILE-ELP-E------------------------LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD- 271 (454)
T ss_dssp CSSCCS-SCC-C------------------------CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-
T ss_pred cCCcCC-ccc-c------------------------cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-
Confidence 444444 333 2 4444444455554444442 111 12445555555554442
Q ss_pred CCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCC-CCCcEEEccCCcceeeCCcccc
Q 047977 398 LPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSG-FALEELTVNGNNFTGSLPACMR 476 (569)
Q Consensus 398 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~ 476 (569)
+|.. .++|+.+++++|.+++. + ..+++|+.|++++|.+.+ ++ .. ++|++|++++|++++ +|..
T Consensus 272 l~~~---~~~L~~L~ls~N~l~~l-~----~~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~-- 335 (454)
T 1jl5_A 272 LPEL---PQSLTFLDVSENIFSGL-S----ELPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL-- 335 (454)
T ss_dssp CCCC---CTTCCEEECCSSCCSEE-S----CCCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC--
T ss_pred cCcc---cCcCCEEECcCCccCcc-c----CcCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc--
Confidence 2221 24455555555544431 0 112355555555555442 11 11 355555555555552 3322
Q ss_pred CCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccc--cCCcCcccC-------------CCCCEEECCCCccee
Q 047977 477 NCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIG--EISPDWGEC-------------RNLSNLQLDRNKISG 541 (569)
Q Consensus 477 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~~-------------~~L~~L~l~~n~~~~ 541 (569)
+++|++|++++|.++. +|. .+++|++|++++|++.+ .+|..++.+ ++|+.|++++|.+++
T Consensus 336 -~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 336 -PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp -CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred -CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 3455555555555552 332 24555555555555554 344444444 789999999998886
Q ss_pred --cCCcCccCCCCCCeEeCcCCcCcccCCC
Q 047977 542 --GIPAELGNLTRLGVLSLDSNELTGKNSY 569 (569)
Q Consensus 542 --~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 569 (569)
.+|. +++.|.+.+|.+.++.||
T Consensus 411 ~~~iP~------sl~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 411 FPDIPE------SVEDLRMNSERVVDPYEF 434 (454)
T ss_dssp ------------------------------
T ss_pred cccchh------hHhheeCcCcccCCcccc
Confidence 4553 467778888888888765
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=293.86 Aligned_cols=302 Identities=20% Similarity=0.174 Sum_probs=149.9
Q ss_pred CCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEe
Q 047977 237 TNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLF 316 (569)
Q Consensus 237 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 316 (569)
++++.|++++|.++...+..+..+++|+.|++++|.+.+ +....+.++++|+.|++++|.+.+..+..+..+++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA-VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCE-eChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 345555555555554444445555555555555554442 2222244445555555555444433333344444555555
Q ss_pred cccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccc
Q 047977 317 LYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHG 396 (569)
Q Consensus 317 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 396 (569)
+++|.+.+..+..|..+++|++|++++|.+....+..|..+++|++|++++|.++.....
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------------------- 170 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE-------------------- 170 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH--------------------
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh--------------------
Confidence 555544444444444444555555555444444444444444444444444444433323
Q ss_pred cCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCcccc
Q 047977 397 ELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMR 476 (569)
Q Consensus 397 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 476 (569)
.+..+++|+.+++++|.+.+..+..+..++ +|+.|++++|...+.++.......+|++|++++|+++...+..+.
T Consensus 171 ----~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 245 (477)
T 2id5_A 171 ----ALSHLHGLIVLRLRHLNINAIRDYSFKRLY-RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR 245 (477)
T ss_dssp ----HHTTCTTCCEEEEESCCCCEECTTCSCSCT-TCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHT
T ss_pred ----HhcccCCCcEEeCCCCcCcEeChhhcccCc-ccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhc
Confidence 344445555555555544444333444443 555555555544444444444444555555555555522223455
Q ss_pred CCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeE
Q 047977 477 NCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVL 556 (569)
Q Consensus 477 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 556 (569)
++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..|..+++|+.|++++|.+++..+..+..+++|++|
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 325 (477)
T 2id5_A 246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325 (477)
T ss_dssp TCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEE
T ss_pred CccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEE
Confidence 55555555555555555445555555555555555555555555555555555555555555555444445555555555
Q ss_pred eCcCCcCc
Q 047977 557 SLDSNELT 564 (569)
Q Consensus 557 ~l~~n~~~ 564 (569)
++++|++.
T Consensus 326 ~l~~N~l~ 333 (477)
T 2id5_A 326 ILDSNPLA 333 (477)
T ss_dssp ECCSSCEE
T ss_pred EccCCCcc
Confidence 55555554
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.4e-34 Score=288.80 Aligned_cols=346 Identities=27% Similarity=0.341 Sum_probs=269.8
Q ss_pred CCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEE
Q 047977 163 KLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFL 242 (569)
Q Consensus 163 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 242 (569)
.+++++.|++.++.+... ..+..+++|++|++++|.+.+.. . +..+++|++|++++|.+....+ ++.+++|+++
T Consensus 44 ~l~~l~~L~l~~~~i~~l--~~~~~l~~L~~L~Ls~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT-P-LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCccC--cchhhhcCCCEEECCCCccCCch-h-hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 357899999999887643 34788899999999999988543 3 8889999999999998876544 8888999999
Q ss_pred EcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccc
Q 047977 243 ALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHF 322 (569)
Q Consensus 243 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 322 (569)
++++|.+++..+ +..+++|+.|++++|.+.+ ++ .+..+++|+.+++.+ .+.+. ..+..+++|+.|++++|.+
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS--ALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKV 189 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG--GGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch--hhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcC
Confidence 999998876543 7888999999999888763 33 277888999999864 33322 2377888999999999888
Q ss_pred cccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccc
Q 047977 323 SGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENI 402 (569)
Q Consensus 323 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 402 (569)
.+. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+... ..+..+++|+.|++++|.+.+..+ +
T Consensus 190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~ 261 (466)
T 1o6v_A 190 SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L 261 (466)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--h
Confidence 743 357788899999999988875543 77788899999999887742 457778889999998888875432 7
Q ss_pred cCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCc
Q 047977 403 SRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLN 482 (569)
Q Consensus 403 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 482 (569)
..+++|+.+++++|.+++..+ +..++ +|+.|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|+
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 334 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNISP--LAGLT-ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 334 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCGG--GTTCT-TCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCC
T ss_pred hcCCCCCEEECCCCccCcccc--ccCCC-ccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCC
Confidence 788888888888888875433 55554 88888888888875433 6778888888888888875443 67888888
Q ss_pred EEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCccee
Q 047977 483 RVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISG 541 (569)
Q Consensus 483 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 541 (569)
+|++++|++.+. ..++.+++|++|++++|++.+..| +..+++|+.|++++|++++
T Consensus 335 ~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 335 RLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp EEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred EeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 888888888764 457788888888888888876655 7888888888888888885
No 30
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.4e-34 Score=286.59 Aligned_cols=388 Identities=23% Similarity=0.289 Sum_probs=268.8
Q ss_pred CCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccCCccccCCCcCcCCCCCCcEE
Q 047977 115 CRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLV 194 (569)
Q Consensus 115 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 194 (569)
.++|++++++++.+ +.+|..+ +++++|++|++++|.+.+..+..++.+++|+.+++.+|.. .+++.|
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i-~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L 76 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHEL 76 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEE
T ss_pred cccchhhhcccCch-hhCChhH-hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEE
Confidence 47888999999888 5788765 8888999999999888888888888888776666655542 346777
Q ss_pred EcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCc
Q 047977 195 ELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLS 274 (569)
Q Consensus 195 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 274 (569)
++++|.+++ +|. ..++|++|++++|.+.. .+. ..++|+.+++++|.+++... + .++|+.|++++|.+.
T Consensus 77 ~l~~~~l~~-lp~---~~~~L~~L~l~~n~l~~-lp~---~~~~L~~L~l~~n~l~~l~~--~--~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 77 ELNNLGLSS-LPE---LPPHLESLVASCNSLTE-LPE---LPQSLKSLLVDNNNLKALSD--L--PPLLEYLGVSNNQLE 144 (454)
T ss_dssp ECTTSCCSC-CCS---CCTTCSEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCCS--C--CTTCCEEECCSSCCS
T ss_pred EecCCcccc-CCC---CcCCCCEEEccCCcCCc-ccc---ccCCCcEEECCCCccCcccC--C--CCCCCEEECcCCCCC
Confidence 777777663 333 23678888888888775 332 23778888888887764221 1 168999999999887
Q ss_pred cccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCccc
Q 047977 275 GEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTL 354 (569)
Q Consensus 275 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 354 (569)
+ ++. ++.+++|+.|++++|.+.+ +|.. .++|++|++++|.+++ +| .+..+++|++|++++|.+.. ++..
T Consensus 145 ~-lp~--~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~- 213 (454)
T 1jl5_A 145 K-LPE--LQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL- 213 (454)
T ss_dssp S-CCC--CTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC-
T ss_pred C-Ccc--cCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC-
Confidence 4 552 8889999999999998874 4443 3589999999999985 55 68899999999999999874 3322
Q ss_pred ccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCc
Q 047977 355 WNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLI 434 (569)
Q Consensus 355 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~ 434 (569)
.++|++|++++|.+. .++ .+..+++|+.|++++|.+.+ +|. ..++|+.+++++|.+++ +|.. +++|+
T Consensus 214 --~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~----~~~L~ 280 (454)
T 1jl5_A 214 --PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL----PQSLT 280 (454)
T ss_dssp --CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC----CTTCC
T ss_pred --cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc----cCcCC
Confidence 268999999999988 555 48899999999999999984 543 24899999999999885 4432 35999
Q ss_pred eEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCC-CCCcEEEccCCccccchhhhhcCCCCCcEEeCcCC
Q 047977 435 NVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNC-SNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGN 513 (569)
Q Consensus 435 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 513 (569)
.|++++|.+.+ ++. ..++|+.|++++|++++ ++ .+ ++|++|++++|.+.+ +|.. +++|++|++++|
T Consensus 281 ~L~ls~N~l~~-l~~---~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N 347 (454)
T 1jl5_A 281 FLDVSENIFSG-LSE---LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFN 347 (454)
T ss_dssp EEECCSSCCSE-ESC---CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSS
T ss_pred EEECcCCccCc-ccC---cCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCC
Confidence 99999999875 221 12689999999999884 33 23 589999999999986 4443 699999999999
Q ss_pred cccccCCcCcccCCCCCEEECCCCccee--cCCcCccCC-------------CCCCeEeCcCCcCcc--cCC
Q 047977 514 HFIGEISPDWGECRNLSNLQLDRNKISG--GIPAELGNL-------------TRLGVLSLDSNELTG--KNS 568 (569)
Q Consensus 514 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~--~~~~~l~~l-------------~~L~~L~l~~n~~~~--~~~ 568 (569)
.++ .+|. .+++|+.|++++|++++ .+|.+++.+ ++|++|++++|+++| ++|
T Consensus 348 ~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP 415 (454)
T 1jl5_A 348 HLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP 415 (454)
T ss_dssp CCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------
T ss_pred ccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch
Confidence 988 4565 47899999999999998 788888888 899999999999998 776
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.2e-33 Score=285.53 Aligned_cols=347 Identities=26% Similarity=0.365 Sum_probs=293.7
Q ss_pred hcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCE
Q 047977 138 TNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQH 217 (569)
Q Consensus 138 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 217 (569)
..+++++.|++.++.+.. ++ .+..+++|++|++++|.+....+ +..+++|++|++++|.+.+..+ +..+++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 446789999999998874 33 57889999999999999876543 8999999999999999986543 889999999
Q ss_pred EEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCc
Q 047977 218 LDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNS 297 (569)
Q Consensus 218 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 297 (569)
|++++|.+.... .+..+++|+++++++|.+.+.. .+..+++|+.|.+.+ .+. ... .+..+++|+.|++++|.
T Consensus 117 L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~-~~~-~~~--~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 117 LTLFNNQITDID--PLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGN-QVT-DLK--PLANLTTLERLDISSNK 188 (466)
T ss_dssp EECCSSCCCCCG--GGTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEEE-SCC-CCG--GGTTCTTCCEEECCSSC
T ss_pred EECCCCCCCCCh--HHcCCCCCCEEECCCCccCCCh--hhccCCcccEeecCC-ccc-Cch--hhccCCCCCEEECcCCc
Confidence 999999988653 3889999999999999988542 488899999999964 333 222 27899999999999999
Q ss_pred ceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCcc
Q 047977 298 FMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPE 377 (569)
Q Consensus 298 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 377 (569)
+.+. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|++|++++|.+....+
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-- 260 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-- 260 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--
Confidence 8743 447889999999999999986543 77899999999999998754 468899999999999999875433
Q ss_pred ccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCC
Q 047977 378 IGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFAL 457 (569)
Q Consensus 378 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 457 (569)
+..+++|+.|++++|.+.+. +. +..+++|+.+++++|.+.+..+ +..++ +|+.|++++|.+.+..+ +..+++|
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~-~L~~L~L~~n~l~~~~~--~~~l~~L 333 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLK-NLTYLTLYFNNISDISP--VSSLTKL 333 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCT-TCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCC-CCCEEECcCCcCCCchh--hccCccC
Confidence 88899999999999999854 33 8889999999999999986543 55665 99999999999986654 7789999
Q ss_pred cEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccc
Q 047977 458 EELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIG 517 (569)
Q Consensus 458 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 517 (569)
+.|++++|++++. ..+.++++|+.|++++|.+++..| +..+++|++|++++|++++
T Consensus 334 ~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 334 QRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 9999999999843 578999999999999999998777 8899999999999999885
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.8e-33 Score=283.42 Aligned_cols=301 Identities=22% Similarity=0.198 Sum_probs=175.3
Q ss_pred CCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEc
Q 047977 214 NLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQI 293 (569)
Q Consensus 214 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 293 (569)
++++|++++|.+....+..|..+++|++|++++|.++...+..+.++++|+.|++++|.+. .++...+.++++|+.|++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEEC
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEEC
Confidence 4444555544444444444445555555555555554444444555555555555555544 333333555556666666
Q ss_pred cCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCccccc
Q 047977 294 QNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGT 373 (569)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 373 (569)
++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|+.|++++|.+...
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 66655555555555666666666666666555555566666666666666666544444556666666666666666555
Q ss_pred CCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhC
Q 047977 374 IPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCS 453 (569)
Q Consensus 374 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 453 (569)
....+..+++|+.|++++|...+.++.......+|+.|++++|.++...+..+..++ +|+.|++++|.+.+..+..+..
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV-YLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT-TCCEEECCSSCCCEECTTSCTT
T ss_pred ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc-ccCeeECCCCcCCccChhhccc
Confidence 555566666666666666655545444444445666666666666533223344443 6666666666666544455566
Q ss_pred CCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCccc
Q 047977 454 GFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFI 516 (569)
Q Consensus 454 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 516 (569)
+++|+.|++++|++.+..+..+.++++|++|++++|.+++..+..|..+++|++|++++|++.
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 666777777777666655666666677777777777666655666666667777777766654
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.2e-33 Score=280.96 Aligned_cols=354 Identities=18% Similarity=0.192 Sum_probs=228.6
Q ss_pred hhcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCC
Q 047977 137 FTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQ 216 (569)
Q Consensus 137 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 216 (569)
+..+++|++|+++++.+.+. + .+..+++|++|++++|.+.+. .+..+++|++|++++|.+.+. + +..+++|+
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~ 109 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNL-D--VTPLTKLT 109 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCC
T ss_pred hhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCcee-e--cCCCCcCC
Confidence 46788889999988888753 3 678888888888888887754 277788888888888887753 2 67788888
Q ss_pred EEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCC
Q 047977 217 HLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNN 296 (569)
Q Consensus 217 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 296 (569)
+|++++|.+... .++.+++|+++++++|.++.. .+..+++|+.|++++|...+.+ .+..+++|+.|++++|
T Consensus 110 ~L~L~~N~l~~l---~~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 110 YLNCDTNKLTKL---DVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp EEECCSSCCSCC---CCTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSS
T ss_pred EEECCCCcCCee---cCCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCC
Confidence 888888887653 267778888888888777753 2667777777777777544343 2566677777777777
Q ss_pred cceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCc
Q 047977 297 SFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPP 376 (569)
Q Consensus 297 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 376 (569)
.+.+ ++ +..+++|+.|++++|.+++. .+..+++|++|++++|.+.+ ++ +..+++|+.|++++|.+++..
T Consensus 181 ~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~-- 249 (457)
T 3bz5_A 181 KITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD-- 249 (457)
T ss_dssp CCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC--
T ss_pred ccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC--
Confidence 7664 33 56667777777777777643 36667777777777777764 33 666677777777777766432
Q ss_pred cccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCC
Q 047977 377 EIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFA 456 (569)
Q Consensus 377 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 456 (569)
...+++|+.++++.+ +|+.+++++|.+.+.+| +..++ +|+.|++++|...+.+|. ...+
T Consensus 250 -~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~-~L~~L~Ls~n~~l~~l~~---~~~~ 308 (457)
T 3bz5_A 250 -VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCR-KIKELDVTHNTQLYLLDC---QAAG 308 (457)
T ss_dssp -CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCT-TCCCCCCTTCTTCCEEEC---TTCC
T ss_pred -HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccc-cCCEEECCCCcccceecc---CCCc
Confidence 344566666665543 34445555555544443 12233 677777776665444432 1222
Q ss_pred CcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCC
Q 047977 457 LEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDR 536 (569)
Q Consensus 457 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 536 (569)
|+.|+ ++++++|++|++++|.+++. + ++.+++|+.|++++|++.+ +++|+.|++++
T Consensus 309 L~~L~-------------l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~ 364 (457)
T 3bz5_A 309 ITELD-------------LSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALN 364 (457)
T ss_dssp CSCCC-------------CTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGG
T ss_pred ceEec-------------hhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccC
Confidence 33332 23346677777777777653 2 6667777777777777653 23455555666
Q ss_pred CcceecCCcCccCCCCCCeEeCcCCcCcccCC
Q 047977 537 NKISGGIPAELGNLTRLGVLSLDSNELTGKNS 568 (569)
Q Consensus 537 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 568 (569)
|.+.+. ..+..|+.+++++|+++|++|
T Consensus 365 n~l~g~-----~~~~~l~~l~l~~N~l~g~ip 391 (457)
T 3bz5_A 365 NNFEAE-----GQTITMPKETLTNNSLTIAVS 391 (457)
T ss_dssp TSEEEE-----EEEEECCCBCCBTTBEEEECC
T ss_pred CcEEec-----ceeeecCccccccCcEEEEcC
Confidence 666643 234456666666666666665
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=8.7e-33 Score=276.62 Aligned_cols=272 Identities=24% Similarity=0.219 Sum_probs=208.1
Q ss_pred cccCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccC
Q 047977 9 SGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKF 88 (569)
Q Consensus 9 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 88 (569)
....+..+.++++|++|+++++.+++. | .+..+++|++|++++|.+++. + +..+++|++|++++|.+.... +
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~---~ 102 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLD---V 102 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC---C
T ss_pred CcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceee---c
Confidence 344456788899999999999998854 4 688899999999999998854 3 788999999999999888763 7
Q ss_pred CCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCCC
Q 047977 89 SNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLT 168 (569)
Q Consensus 89 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 168 (569)
+.+++|++|++++|.+.+ .+ ++.+++|++|++++|.+++ ++ +..+++|++|++++|...+.. .+..+++|+
T Consensus 103 ~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~ 173 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLT 173 (457)
T ss_dssp TTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred CCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence 889999999999998884 33 7888999999999999885 33 578899999999998654343 477888999
Q ss_pred EEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEccccc
Q 047977 169 VLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQ 248 (569)
Q Consensus 169 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 248 (569)
.|++++|.++.. + +..+++|+.|++++|.+.+. .+..+++|++|++++|.+... + ++.+++|+.+++++|.
T Consensus 174 ~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 174 TLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp EEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSC
T ss_pred EEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCc
Confidence 999999988763 2 77888999999999988754 377888999999999988763 3 7788889999999988
Q ss_pred ceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccC
Q 047977 249 LSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPI 326 (569)
Q Consensus 249 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 326 (569)
+++.. ...+++|+.+.++.+ +|+.+++++|...+.+| +..+++|+.|++++|...+.+
T Consensus 245 l~~~~---~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l 302 (457)
T 3bz5_A 245 LTELD---VSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLL 302 (457)
T ss_dssp CSCCC---CTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEE
T ss_pred CCCcC---HHHCCCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECCCCccccee
Confidence 87543 445666776665543 34455555555544443 345667777777777654443
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.5e-32 Score=271.25 Aligned_cols=310 Identities=19% Similarity=0.191 Sum_probs=162.9
Q ss_pred CCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEE
Q 047977 212 LKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESL 291 (569)
Q Consensus 212 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 291 (569)
+++++.++++++.+....+..++.+++|++++++++.+++..+..+..+++|+.|++++|.+. .++...++.+++|+.|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEE
Confidence 456666666666665554444555666666666666665554455555566666666665554 2333334555555555
Q ss_pred EccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCccc
Q 047977 292 QIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLS 371 (569)
Q Consensus 292 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 371 (569)
++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+... .+..+++|+.+++++|.+.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 5555555533223345555555555555555544444455555555555555555432 2334455555555555443
Q ss_pred ccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhh
Q 047977 372 GTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYEL 451 (569)
Q Consensus 372 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 451 (569)
. +...++|+.+++++|.+... +. ...+ +|+.|++++|.+.+. ..+
T Consensus 200 ~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~-------------------------~L~~L~l~~n~l~~~--~~l 244 (390)
T 3o6n_A 200 T-----LAIPIAVEELDASHNSINVV-RG--PVNV-------------------------ELTILKLQHNNLTDT--AWL 244 (390)
T ss_dssp E-----EECCSSCSEEECCSSCCCEE-EC--CCCS-------------------------SCCEEECCSSCCCCC--GGG
T ss_pred c-----cCCCCcceEEECCCCeeeec-cc--cccc-------------------------cccEEECCCCCCccc--HHH
Confidence 1 12223455555554444421 11 1123 555555555555432 344
Q ss_pred hCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCE
Q 047977 452 CSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSN 531 (569)
Q Consensus 452 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 531 (569)
..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+ ++..++.+++|++|++++|++. .+|..++.+++|+.
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~ 322 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN 322 (390)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSE
T ss_pred cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCE
Confidence 555566666666665555555555556666666666665553 2333445566666666666554 34444555566666
Q ss_pred EECCCCcceecCCcCccCCCCCCeEeCcCCcCcc
Q 047977 532 LQLDRNKISGGIPAELGNLTRLGVLSLDSNELTG 565 (569)
Q Consensus 532 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 565 (569)
|++++|+++.. + +..+++|++|++++|++.+
T Consensus 323 L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 323 LYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp EECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred EECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence 66666665532 1 4555566666666666543
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1e-31 Score=261.26 Aligned_cols=306 Identities=24% Similarity=0.346 Sum_probs=178.3
Q ss_pred cCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCc
Q 047977 210 GQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELE 289 (569)
Q Consensus 210 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 289 (569)
..+++|++|+++++.+... ..+..+++|+++++++|.+++..+ +..+++|+.|++++|.+.+ ++ .+..+++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~--~~~~l~~L~ 113 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS--ALQNLTNLR 113 (347)
T ss_dssp HHHTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG--GGTTCTTCS
T ss_pred hhcccccEEEEeCCccccc--hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch--HHcCCCcCC
Confidence 3456667777766666543 125555666666666655553322 4555555555555555442 21 144445555
Q ss_pred EEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCc
Q 047977 290 SLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNN 369 (569)
Q Consensus 290 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 369 (569)
.|++++|.+.+. +. +..+++|+.|++++|...... .. +..+++|++|++++|.
T Consensus 114 ~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~-~~------------------------~~~l~~L~~L~l~~~~ 166 (347)
T 4fmz_A 114 ELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDL-SP------------------------LSNMTGLNYLTVTESK 166 (347)
T ss_dssp EEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC-GG------------------------GTTCTTCCEEECCSSC
T ss_pred EEECcCCcccCc-hh-hccCCceeEEECCCCCCcccc-cc------------------------hhhCCCCcEEEecCCC
Confidence 555555444422 11 444444444444444333222 22 4444555555555554
Q ss_pred ccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccCh
Q 047977 370 LSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPY 449 (569)
Q Consensus 370 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 449 (569)
+.... .+..+++|+.+++++|.+.+ ++. +..+++|+.+++++|.+.+..+ +..++ +|++|++++|.+.+..+
T Consensus 167 ~~~~~--~~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~-~L~~L~l~~n~l~~~~~- 238 (347)
T 4fmz_A 167 VKDVT--PIANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDITP--VANMT-RLNSLKIGNNKITDLSP- 238 (347)
T ss_dssp CCCCG--GGGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCT-TCCEEECCSSCCCCCGG-
T ss_pred cCCch--hhccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCCCCCCch--hhcCC-cCCEEEccCCccCCCcc-
Confidence 43211 14445555555555555542 211 4555666666666665553322 33443 67777777776653322
Q ss_pred hhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCC
Q 047977 450 ELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNL 529 (569)
Q Consensus 450 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L 529 (569)
+..+++|++|++++|.++. . ..+..+++|++|++++|.+.+. ..+..+++|++|++++|++.+..+..++.+++|
T Consensus 239 -~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 313 (347)
T 4fmz_A 239 -LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313 (347)
T ss_dssp -GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred -hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence 6667778888888887763 2 4577778888888888877754 347778888888888888877777778888888
Q ss_pred CEEECCCCcceecCCcCccCCCCCCeEeCcCCcCc
Q 047977 530 SNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELT 564 (569)
Q Consensus 530 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 564 (569)
+.|++++|++++..| +..+++|++|++++|+|+
T Consensus 314 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 314 TTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 888888888886555 777888888888888875
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.8e-31 Score=259.49 Aligned_cols=308 Identities=23% Similarity=0.319 Sum_probs=234.6
Q ss_pred CcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCC
Q 047977 184 DIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRL 263 (569)
Q Consensus 184 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L 263 (569)
.+..+++|+.|++.++.+... + .+..+++|++|++++|.+....+ +..+++|+++++++|.+++. ..+..+++|
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L 112 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNL 112 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred cchhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence 345778999999999998743 3 48889999999999999886543 88999999999999998864 358899999
Q ss_pred CEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccC
Q 047977 264 NELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSG 343 (569)
Q Consensus 264 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 343 (569)
++|++++|.+.+ ++. +..+++|+.+++++|...... ..+..+++|+.|++++|.+.+.. .+..+++|++|++++
T Consensus 113 ~~L~l~~n~i~~-~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 113 RELYLNEDNISD-ISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVT--PIANLTDLYSLSLNY 186 (347)
T ss_dssp SEEECTTSCCCC-CGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECTT
T ss_pred CEEECcCCcccC-chh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCch--hhccCCCCCEEEccC
Confidence 999999999874 333 789999999999999766444 44888999999999999987443 377888999999999
Q ss_pred CccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCC
Q 047977 344 NQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIP 423 (569)
Q Consensus 344 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 423 (569)
|.+.+..+ +..+++|+.+++++|.+....+ +..+++|+.|++++|.+.+. +. +..++
T Consensus 187 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~~l~----------------- 243 (347)
T 4fmz_A 187 NQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL-SP-LANLS----------------- 243 (347)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCT-----------------
T ss_pred Cccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC-cc-hhcCC-----------------
Confidence 88874422 6777888888888877663222 55666677777766666522 11 33444
Q ss_pred chhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCC
Q 047977 424 GDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHP 503 (569)
Q Consensus 424 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 503 (569)
+|++|++++|.+.+. ..+..+++|+.|++++|.+++ . ..+..+++|++|++++|.+.+..+..++.++
T Consensus 244 --------~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 311 (347)
T 4fmz_A 244 --------QLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311 (347)
T ss_dssp --------TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCT
T ss_pred --------CCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccc
Confidence 555555555555431 345667788888888887773 3 4577888899999999988888888888899
Q ss_pred CCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcce
Q 047977 504 RLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKIS 540 (569)
Q Consensus 504 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 540 (569)
+|++|++++|++++..| ++.+++|+.|++++|.++
T Consensus 312 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 312 NLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp TCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 99999999998876544 788899999999998876
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.1e-31 Score=279.42 Aligned_cols=310 Identities=19% Similarity=0.182 Sum_probs=166.0
Q ss_pred CCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEE
Q 047977 212 LKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESL 291 (569)
Q Consensus 212 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 291 (569)
+++++.++++++.+....+..++.+++|+.|++++|.++...+..+..+++|+.|++++|.+. .++...++.+++|+.|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEE
Confidence 345566666665555544444555555555555555555444445555555555555555544 2333334455555555
Q ss_pred EccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCccc
Q 047977 292 QIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLS 371 (569)
Q Consensus 292 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 371 (569)
++++|.+.+..+..++.+++|+.|++++|.+++..+..|..+++|++|++++|.+... .+..++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~------------- 192 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIP------------- 192 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCT-------------
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---Chhhhh-------------
Confidence 5555554433333344455555555555555444444444455555555555544422 133344
Q ss_pred ccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhh
Q 047977 372 GTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYEL 451 (569)
Q Consensus 372 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 451 (569)
+|+.+++++|.+.+ +...++|+.+++++|.+....+. .+++|+.|++++|.+.+ +..+
T Consensus 193 -----------~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~----~~~~L~~L~L~~n~l~~--~~~l 250 (597)
T 3oja_B 193 -----------SLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP----VNVELTILKLQHNNLTD--TAWL 250 (597)
T ss_dssp -----------TCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECS----CCSCCCEEECCSSCCCC--CGGG
T ss_pred -----------hhhhhhcccCcccc-----ccCCchhheeeccCCcccccccc----cCCCCCEEECCCCCCCC--Chhh
Confidence 44555554444431 22334455555555544422111 11356666666666653 2445
Q ss_pred hCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCE
Q 047977 452 CSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSN 531 (569)
Q Consensus 452 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 531 (569)
..+++|+.|++++|.+.+..|..+.++++|+.|++++|.+++ +|..++.+++|++|++++|.+. .+|..+..+++|+.
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~ 328 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN 328 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSE
T ss_pred ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCE
Confidence 566666666666666665556666666666666666666664 3444455666666666666665 45555666666666
Q ss_pred EECCCCcceecCCcCccCCCCCCeEeCcCCcCcc
Q 047977 532 LQLDRNKISGGIPAELGNLTRLGVLSLDSNELTG 565 (569)
Q Consensus 532 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 565 (569)
|++++|.+++. + +..+++|+.|++++|++.+
T Consensus 329 L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 329 LYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp EECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred EECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCC
Confidence 66666666643 1 4556666666666666654
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.2e-31 Score=262.97 Aligned_cols=310 Identities=19% Similarity=0.196 Sum_probs=227.5
Q ss_pred CCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEE
Q 047977 187 LMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNEL 266 (569)
Q Consensus 187 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L 266 (569)
.+++++.+++.++.+...-+..+..+++|++|++++|.+....+..++.+++|+++++++|.++...+..+..+++|+.|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 45789999999999886555557889999999999999998888899999999999999999998888889999999999
Q ss_pred eCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCcc
Q 047977 267 GLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQL 346 (569)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 346 (569)
++++|.+. .++...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++. .+..+++|+.|++++|.+
T Consensus 123 ~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 123 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred ECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 99999988 66766678999999999999999877777899999999999999999854 356789999999999988
Q ss_pred ccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchh
Q 047977 347 SGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDF 426 (569)
Q Consensus 347 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~ 426 (569)
.. +...++|++|++++|.+..... ...++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+..+
T Consensus 199 ~~-----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (390)
T 3o6n_A 199 ST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 268 (390)
T ss_dssp SE-----EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cc-----cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence 63 3445789999999999874422 2357999999999988743 456666666666666666655444444
Q ss_pred hccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCc
Q 047977 427 GKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLD 506 (569)
Q Consensus 427 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 506 (569)
..++ +|+.|++++|.+ + .++..+..+++|++|++++|.+. .+|..++.+++|+
T Consensus 269 ~~l~-~L~~L~L~~n~l------------------------~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~ 321 (390)
T 3o6n_A 269 VKMQ-RLERLYISNNRL------------------------V-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE 321 (390)
T ss_dssp TTCS-SCCEEECCSSCC------------------------C-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCS
T ss_pred cccc-cCCEEECCCCcC------------------------c-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCC
Confidence 4443 555555555544 4 22333344455555555555544 2333344455555
Q ss_pred EEeCcCCcccccCCcCcccCCCCCEEECCCCcce
Q 047977 507 FIRLSGNHFIGEISPDWGECRNLSNLQLDRNKIS 540 (569)
Q Consensus 507 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 540 (569)
+|++++|+++.. .+..+++|+.|++++|++.
T Consensus 322 ~L~L~~N~i~~~---~~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 322 NLYLDHNSIVTL---KLSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp EEECCSSCCCCC---CCCTTCCCSEEECCSSCEE
T ss_pred EEECCCCcccee---CchhhccCCEEEcCCCCcc
Confidence 555555554422 1444455555555555544
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.98 E-value=1.5e-31 Score=254.94 Aligned_cols=253 Identities=29% Similarity=0.483 Sum_probs=197.2
Q ss_pred CCCcEEecccccccc--cCCccccCCCCCCEEEccC-CccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCE
Q 047977 310 TKLQYLFLYRNHFSG--PIPSEIGKLTSLEKLDLSG-NQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVA 386 (569)
Q Consensus 310 ~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 386 (569)
.+++.|++++|.+.+ .+|..+..+++|++|++++ |.+....+..|.++++|++|++++|.+++..+..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 356666666666665 5566666666666666663 6666556666666677777777777666666666667777777
Q ss_pred EEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCc
Q 047977 387 FDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNN 466 (569)
Q Consensus 387 L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 466 (569)
|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+.+.|+.|++++|.+.+..|..+..+. |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 777777776666677777777777777777777777777777666788888888888777777777776 9999999999
Q ss_pred ceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcC
Q 047977 467 FTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAE 546 (569)
Q Consensus 467 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~ 546 (569)
+++..+..+..+++|+.|++++|.+++..+. +..+++|++|++++|.+.+.+|..+..+++|+.|++++|++++.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 8877888888999999999999999866665 788899999999999998888999999999999999999999888886
Q ss_pred ccCCCCCCeEeCcCCc-Ccc
Q 047977 547 LGNLTRLGVLSLDSNE-LTG 565 (569)
Q Consensus 547 l~~l~~L~~L~l~~n~-~~~ 565 (569)
..+++|+.+++++|+ +.|
T Consensus 288 -~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 288 -GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp -TTGGGSCGGGTCSSSEEES
T ss_pred -ccccccChHHhcCCCCccC
Confidence 888999999999998 665
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.8e-30 Score=270.34 Aligned_cols=310 Identities=19% Similarity=0.182 Sum_probs=223.7
Q ss_pred CCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEE
Q 047977 187 LMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNEL 266 (569)
Q Consensus 187 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L 266 (569)
.+.+++.+++.++.+...-+..+..+++|++|++++|.+....+..++.+++|+.|++++|.++...+..+..+++|+.|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 35788999999999886656667889999999999999998888899999999999999999998888888999999999
Q ss_pred eCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCcc
Q 047977 267 GLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQL 346 (569)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 346 (569)
++++|.+. .++...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++. .+..+++|+.|++++|.+
T Consensus 129 ~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 129 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence 99999998 66666688999999999999999987788899999999999999999854 356688999999999987
Q ss_pred ccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchh
Q 047977 347 SGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDF 426 (569)
Q Consensus 347 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~ 426 (569)
.. +...++|+.|++++|.+...... ..++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..|..+
T Consensus 205 ~~-----l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 205 ST-----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp SE-----EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cc-----ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHh
Confidence 63 34456888888888887633221 125677777777776632 455556666666666666555555555
Q ss_pred hccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCc
Q 047977 427 GKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLD 506 (569)
Q Consensus 427 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 506 (569)
..++ +|+.|++++|.+.+ ++..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+.. ++.+++|+
T Consensus 275 ~~l~-~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~ 348 (597)
T 3oja_B 275 VKMQ-RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLK 348 (597)
T ss_dssp TTCS-SCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCS
T ss_pred cCcc-CCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCC
Confidence 5544 55555555555542 2333344455555555555554 34444444555555555555554321 34445555
Q ss_pred EEeCcCCccc
Q 047977 507 FIRLSGNHFI 516 (569)
Q Consensus 507 ~L~l~~~~~~ 516 (569)
.|++++|++.
T Consensus 349 ~L~l~~N~~~ 358 (597)
T 3oja_B 349 NLTLSHNDWD 358 (597)
T ss_dssp EEECCSSCEE
T ss_pred EEEeeCCCCC
Confidence 5555555543
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2e-29 Score=242.97 Aligned_cols=269 Identities=19% Similarity=0.251 Sum_probs=183.6
Q ss_pred CCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEc
Q 047977 286 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQL 365 (569)
Q Consensus 286 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 365 (569)
+.++.|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.. ++..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEEC
Confidence 445555555555554444445555556666666555554445555556666666666665552 222222 55666666
Q ss_pred ccCcccccCCccccCCCCCCEEEccCCcccc--cCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcC
Q 047977 366 FFNNLSGTIPPEIGSMASLVAFDVNTNQLHG--ELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSF 443 (569)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 443 (569)
++|.+....+..+..+++|+.|++++|.+.. ..+..+..+++|+.+++++|.++. +|..+. ++|++|++++|.+
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~---~~L~~L~l~~n~l 204 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP---PSLTELHLDGNKI 204 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC---TTCSEEECTTSCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc---ccCCEEECCCCcC
Confidence 6666654444455566666666666665542 344556667777777777776663 343332 4888888888888
Q ss_pred ccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCc
Q 047977 444 SGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDW 523 (569)
Q Consensus 444 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l 523 (569)
.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|++++..+..|
T Consensus 205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence 8777778888889999999999988776778888999999999999888 567778889999999999999887666666
Q ss_pred cc------CCCCCEEECCCCccee--cCCcCccCCCCCCeEeCcCCc
Q 047977 524 GE------CRNLSNLQLDRNKISG--GIPAELGNLTRLGVLSLDSNE 562 (569)
Q Consensus 524 ~~------~~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~ 562 (569)
.. .++|+.|++++|++.. ..|..+..+.+++.+++++|+
T Consensus 284 ~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 43 4788999999998863 567788889999999999885
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1e-33 Score=286.77 Aligned_cols=377 Identities=18% Similarity=0.182 Sum_probs=283.0
Q ss_pred CCCCcEEEcccCcceecCC-ccccCCCCCCEEEcccCCCCcC----CCcCCcCCCCCCEEEcccccceeccCccC-cCCC
Q 047977 188 MSNIQLVELFNNSFTGQIP-SSLGQLKNLQHLDLRMNALNST----IPPELGLCTNLSFLALAMNQLSGGLPLSL-SNLS 261 (569)
Q Consensus 188 ~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~~l-~~~~ 261 (569)
.+++++|+++++.+.+... ..+..+++|++|++++|.+... .+..+..+++|+++++++|.+.+.....+ ..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 3568899999998865332 2366789999999999998743 24456778999999999999876433222 2334
Q ss_pred ----CCCEEeCcCCcCccc---cCccccCCCCCCcEEEccCCcceeeCCccc-----cCCCCCcEEecccccccccC---
Q 047977 262 ----RLNELGLSDNFLSGE---ISANLIGNWTELESLQIQNNSFMGNIPPEI-----GLLTKLQYLFLYRNHFSGPI--- 326 (569)
Q Consensus 262 ----~L~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~--- 326 (569)
+|++|++++|.+.+. .....+..+++|+.|++++|.+.+..+..+ ...++|++|++++|.+++..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 799999999998742 223447889999999999998765433322 23568999999999988643
Q ss_pred -CccccCCCCCCEEEccCCccccccCcccc-----cCCCCCEEEcccCccccc----CCccccCCCCCCEEEccCCcccc
Q 047977 327 -PSEIGKLTSLEKLDLSGNQLSGTIPPTLW-----NLTNLLSLQLFFNNLSGT----IPPEIGSMASLVAFDVNTNQLHG 396 (569)
Q Consensus 327 -~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~ 396 (569)
+..+..+++|++|++++|.+.+.....+. ..++|++|++++|.++.. ++..+..+++|+.|++++|.+.+
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 45566789999999999998765444443 356999999999998753 35566778999999999998875
Q ss_pred cC-----CccccCCCCCCEEEccCCccccc----CCchhhccCCCCceEEcccCcCccccChhhhC-----CCCCcEEEc
Q 047977 397 EL-----PENISRLVNLNKFSVFTNNFSGS----IPGDFGKFSPSLINVSFSNNSFSGELPYELCS-----GFALEELTV 462 (569)
Q Consensus 397 ~~-----~~~~~~l~~L~~l~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l 462 (569)
.. +.....+++|+.|++++|.++.. ++..+..++ +|++|++++|.+.+..+..+.. .++|++|++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE-SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT-TCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCC-CcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence 32 22233589999999999988764 445555565 9999999999987654444433 269999999
Q ss_pred cCCcceee----CCccccCCCCCcEEEccCCccccchhhhhcC-----CCCCcEEeCcCCcccc----cCCcCcccCCCC
Q 047977 463 NGNNFTGS----LPACMRNCSNLNRVRFDGNQFTGNITRAFGV-----HPRLDFIRLSGNHFIG----EISPDWGECRNL 529 (569)
Q Consensus 463 ~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~-----l~~L~~L~l~~~~~~~----~~~~~l~~~~~L 529 (569)
++|.++.. ++..+..+++|++|++++|.+.+..+..+.. .++|++|++++|.+++ .++..+..+++|
T Consensus 321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L 400 (461)
T 1z7x_W 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 400 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred CCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc
Confidence 99998754 3556778899999999999998765554442 7899999999999886 677788899999
Q ss_pred CEEECCCCcceecCCcCcc-----CCCCCCeEeCcCCcCcc
Q 047977 530 SNLQLDRNKISGGIPAELG-----NLTRLGVLSLDSNELTG 565 (569)
Q Consensus 530 ~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~~~~ 565 (569)
++|++++|++++.....+. ....|++|.+.++.+..
T Consensus 401 ~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 401 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp CEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred cEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 9999999999864333332 24578888888877654
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=9.9e-30 Score=245.16 Aligned_cols=288 Identities=19% Similarity=0.221 Sum_probs=212.8
Q ss_pred CCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEc
Q 047977 262 RLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDL 341 (569)
Q Consensus 262 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 341 (569)
+++.++++++.+. .++... .++++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4566666666554 344321 256777777777776655566777777777777777777666667777777777777
Q ss_pred cCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccc--cCCccccCCCCCCEEEccCCccc
Q 047977 342 SGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHG--ELPENISRLVNLNKFSVFTNNFS 419 (569)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~l~l~~~~~~ 419 (569)
++|.+. .++..+. ++|++|++++|.+.......+..+++|+.|++++|.+.. ..+..+..+ +|+.+++++|.++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 777776 3333332 677777777777775555567777778888877777752 445556666 8888888888877
Q ss_pred ccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhh
Q 047977 420 GSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAF 499 (569)
Q Consensus 420 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l 499 (569)
+ +|..+. ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. .+|..+
T Consensus 186 ~-l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 260 (332)
T 2ft3_A 186 G-IPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL 260 (332)
T ss_dssp S-CCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTG
T ss_pred c-cCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhh
Confidence 4 444443 48999999999988766677888899999999999998766678899999999999999998 677778
Q ss_pred cCCCCCcEEeCcCCcccccCCcCccc------CCCCCEEECCCCcce--ecCCcCccCCCCCCeEeCcCCc
Q 047977 500 GVHPRLDFIRLSGNHFIGEISPDWGE------CRNLSNLQLDRNKIS--GGIPAELGNLTRLGVLSLDSNE 562 (569)
Q Consensus 500 ~~l~~L~~L~l~~~~~~~~~~~~l~~------~~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~ 562 (569)
+.+++|++|++++|++++..+..|.. .++|+.|++++|++. +..|.++..+++|+.+++++|+
T Consensus 261 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 99999999999999998776666654 477999999999987 6777889999999999999885
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.5e-33 Score=282.81 Aligned_cols=393 Identities=19% Similarity=0.146 Sum_probs=295.0
Q ss_pred CCCCCEEEccCCccccCCCcC-cCCCCCCcEEEcccCccee----cCCccccCCCCCCEEEcccCCCCcCCCcCC-cCCC
Q 047977 164 LSNLTVLRLATNKFSGPIPGD-IGLMSNIQLVELFNNSFTG----QIPSSLGQLKNLQHLDLRMNALNSTIPPEL-GLCT 237 (569)
Q Consensus 164 ~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~ 237 (569)
.++|++|+++++.++...... +..+++|++|++++|.+.+ .++..+..+++|++|++++|.+.+.....+ ..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 367899999999876543333 6678999999999999874 345667888999999999999865433222 2233
Q ss_pred ----CCCEEEccccccee----ccCccCcCCCCCCEEeCcCCcCccccCc----cccCCCCCCcEEEccCCcceeeC---
Q 047977 238 ----NLSFLALAMNQLSG----GLPLSLSNLSRLNELGLSDNFLSGEISA----NLIGNWTELESLQIQNNSFMGNI--- 302 (569)
Q Consensus 238 ----~L~~l~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~--- 302 (569)
+|+++++++|.+++ ..+..+..+++|+.|++++|.+.+.... ......++|+.|++++|.+.+..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 79999999999885 3467788999999999999998744332 22334578999999999887543
Q ss_pred -CccccCCCCCcEEecccccccccCCcccc-----CCCCCCEEEccCCccccc----cCcccccCCCCCEEEcccCcccc
Q 047977 303 -PPEIGLLTKLQYLFLYRNHFSGPIPSEIG-----KLTSLEKLDLSGNQLSGT----IPPTLWNLTNLLSLQLFFNNLSG 372 (569)
Q Consensus 303 -~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~ 372 (569)
+..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+.+. ++..+..+++|++|++++|.+..
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 44566789999999999998754333332 366999999999998854 35667789999999999998874
Q ss_pred cC-----CccccCCCCCCEEEccCCccccc----CCccccCCCCCCEEEccCCcccccCCchhhc----cCCCCceEEcc
Q 047977 373 TI-----PPEIGSMASLVAFDVNTNQLHGE----LPENISRLVNLNKFSVFTNNFSGSIPGDFGK----FSPSLINVSFS 439 (569)
Q Consensus 373 ~~-----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~----~~~~L~~L~l~ 439 (569)
.. ...+..+++|+.|++++|.++.. ++..+..+++|+.|++++|.+....+..+.. ..++|++|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 32 22233588999999999998853 5666777999999999999887554444433 22499999999
Q ss_pred cCcCccc----cChhhhCCCCCcEEEccCCcceeeCCcccc----C-CCCCcEEEccCCcccc----chhhhhcCCCCCc
Q 047977 440 NNSFSGE----LPYELCSGFALEELTVNGNNFTGSLPACMR----N-CSNLNRVRFDGNQFTG----NITRAFGVHPRLD 506 (569)
Q Consensus 440 ~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~----~-~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~ 506 (569)
+|.+++. ++..+..+++|++|++++|.+++..+..+. . .++|++|++++|.+++ .++..+..+++|+
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence 9998865 455667789999999999998765444333 2 6899999999999986 6788888999999
Q ss_pred EEeCcCCcccccCCcCc-----ccCCCCCEEECCCCcceecCCcCcc----CCCCCCeE
Q 047977 507 FIRLSGNHFIGEISPDW-----GECRNLSNLQLDRNKISGGIPAELG----NLTRLGVL 556 (569)
Q Consensus 507 ~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~n~~~~~~~~~l~----~l~~L~~L 556 (569)
+|++++|++.+.....+ .....|+.|++.++......++.++ ..|+|+.+
T Consensus 402 ~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~~~~p~l~i~ 460 (461)
T 1z7x_W 402 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460 (461)
T ss_dssp EEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred EEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHhccCCCcEee
Confidence 99999999875432222 2345799999888877644333332 34555543
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=5.1e-30 Score=244.25 Aligned_cols=252 Identities=26% Similarity=0.466 Sum_probs=219.9
Q ss_pred CCCcEEEccCCccee--eCCccccCCCCCcEEeccc-ccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCE
Q 047977 286 TELESLQIQNNSFMG--NIPPEIGLLTKLQYLFLYR-NHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLS 362 (569)
Q Consensus 286 ~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 362 (569)
.+++.|+++++.+.+ .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+....+..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467888888888876 6778888888888888885 7787778888888888999999888888778888888899999
Q ss_pred EEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCC-CCCEEEccCCcccccCCchhhccCCCCceEEcccC
Q 047977 363 LQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLV-NLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNN 441 (569)
Q Consensus 363 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 441 (569)
|++++|.+.+..+..+..+++|++|++++|.+.+.+|..+..++ +|+.+++++|.+++..|..+..+ .|+.|++++|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l--~L~~L~Ls~N 207 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--NLAFVDLSRN 207 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC--CCSEEECCSS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC--cccEEECcCC
Confidence 99999988877888888889999999999998888888888887 89999999999988888888776 3999999999
Q ss_pred cCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCc
Q 047977 442 SFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISP 521 (569)
Q Consensus 442 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 521 (569)
.+.+..+..+..+++|+.|++++|.+++..+. +..+++|++|++++|.+++.+|..++.+++|++|++++|++++.+|.
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 99888888888999999999999999855544 78899999999999999988999999999999999999999988888
Q ss_pred CcccCCCCCEEECCCCc-cee
Q 047977 522 DWGECRNLSNLQLDRNK-ISG 541 (569)
Q Consensus 522 ~l~~~~~L~~L~l~~n~-~~~ 541 (569)
. +.+++|+.+++++|+ +.+
T Consensus 287 ~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 287 G-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp S-TTGGGSCGGGTCSSSEEES
T ss_pred C-ccccccChHHhcCCCCccC
Confidence 7 889999999999998 443
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=7.2e-29 Score=239.02 Aligned_cols=269 Identities=19% Similarity=0.243 Sum_probs=176.5
Q ss_pred CCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEE
Q 047977 261 SRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLD 340 (569)
Q Consensus 261 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 340 (569)
+.++.|++++|.+. .++...+..+++|+.|++++|.+.+..|..+..+++|++|++++|+++ .+|..+. ++|++|+
T Consensus 52 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELR 127 (330)
T ss_dssp TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEE
Confidence 34555555555554 233333555566666666666655444555666666666666666655 3333332 4666666
Q ss_pred ccCCccccccCcccccCCCCCEEEcccCcccc--cCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcc
Q 047977 341 LSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSG--TIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNF 418 (569)
Q Consensus 341 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~ 418 (569)
+++|.+....+..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.+. .+|..+. ++|+.+++++|.+
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l 204 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKI 204 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCC
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcC
Confidence 66666665555556666666666666666642 34455666677777777777666 3444332 6777777777777
Q ss_pred cccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhh
Q 047977 419 SGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRA 498 (569)
Q Consensus 419 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 498 (569)
++..+..+..++ +|++|++++|.+.+..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++..+..
T Consensus 205 ~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~ 282 (330)
T 1xku_A 205 TKVDAASLKGLN-NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND 282 (330)
T ss_dssp CEECTGGGTTCT-TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTS
T ss_pred CccCHHHhcCCC-CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhh
Confidence 766666666665 7888888888777665666777888888888888887 67777888888888888888888766666
Q ss_pred hcC------CCCCcEEeCcCCcccc--cCCcCcccCCCCCEEECCCCc
Q 047977 499 FGV------HPRLDFIRLSGNHFIG--EISPDWGECRNLSNLQLDRNK 538 (569)
Q Consensus 499 l~~------l~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~n~ 538 (569)
|.. .++++.|++++|++.. ..|..|..+++++.+++++|+
T Consensus 283 f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 283 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 543 3788888999888753 455678888889999888874
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=5e-29 Score=240.24 Aligned_cols=268 Identities=20% Similarity=0.233 Sum_probs=179.8
Q ss_pred CCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEE
Q 047977 261 SRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLD 340 (569)
Q Consensus 261 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 340 (569)
++++.|++++|.+. .++...+..+++|+.|++++|.+.+..+.++..+++|++|++++|.++ .+|..+. ++|++|+
T Consensus 54 ~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 54 PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELR 129 (332)
T ss_dssp TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEE
Confidence 45555555555554 233333555666666666666665555555666666666666666665 3333332 5666666
Q ss_pred ccCCccccccCcccccCCCCCEEEcccCcccc--cCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcc
Q 047977 341 LSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSG--TIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNF 418 (569)
Q Consensus 341 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~ 418 (569)
+++|.+....+..|..+++|++|++++|.++. ..+..+..+ +|+.+++++|.+. .+|..+. ++|+.+++++|.+
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~i 205 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKI 205 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC--SSCSCCBCCSSCC
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCcccc--CCCCEEECCCCcC
Confidence 66666665545556666677777777666642 344455555 6777777777766 3444332 6777777777777
Q ss_pred cccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhh
Q 047977 419 SGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRA 498 (569)
Q Consensus 419 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 498 (569)
++..+..+..++ +|+.|++++|.+.+..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++..+..
T Consensus 206 ~~~~~~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~ 283 (332)
T 2ft3_A 206 QAIELEDLLRYS-KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVND 283 (332)
T ss_dssp CCCCTTSSTTCT-TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTS
T ss_pred CccCHHHhcCCC-CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhH
Confidence 766666666665 8888888888887666667777888888888888888 67777888888888888888888766666
Q ss_pred hcC------CCCCcEEeCcCCccc--ccCCcCcccCCCCCEEECCCCc
Q 047977 499 FGV------HPRLDFIRLSGNHFI--GEISPDWGECRNLSNLQLDRNK 538 (569)
Q Consensus 499 l~~------l~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~n~ 538 (569)
|.. .++|+.|++++|++. ...|..|..+++|+.+++++|+
T Consensus 284 ~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 284 FCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 654 367888999999876 5566778888999999988874
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.8e-27 Score=226.67 Aligned_cols=248 Identities=23% Similarity=0.249 Sum_probs=137.0
Q ss_pred cEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCcccccc--CcccccCCCCCEEEcc
Q 047977 289 ESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTI--PPTLWNLTNLLSLQLF 366 (569)
Q Consensus 289 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~ 366 (569)
+.++.+++.+. .+|..+ .+++++|++++|.+++..+..|..+++|++|++++|.+.... +..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 45566555554 333322 246666666666666433334566666666666666655221 3344455666666666
Q ss_pred cCcccccCCccccCCCCCCEEEccCCcccccCC-ccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCcc
Q 047977 367 FNNLSGTIPPEIGSMASLVAFDVNTNQLHGELP-ENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSG 445 (569)
Q Consensus 367 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 445 (569)
+|.+. .++..+..+++|+.|++++|.+.+..+ ..+..++ +|++|++++|.+.+
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-------------------------~L~~L~l~~n~l~~ 140 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR-------------------------NLIYLDISHTHTRV 140 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCT-------------------------TCCEEECTTSCCEE
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhcc-------------------------CCCEEECCCCcCCc
Confidence 66554 233334455555555555555442221 2334444 55555555555544
Q ss_pred ccChhhhCCCCCcEEEccCCccee-eCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcc
Q 047977 446 ELPYELCSGFALEELTVNGNNFTG-SLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWG 524 (569)
Q Consensus 446 ~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~ 524 (569)
..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+..+..++.+++|++|++++|.+++..+..+.
T Consensus 141 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 220 (306)
T 2z66_A 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220 (306)
T ss_dssp CSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGT
T ss_pred cchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhcc
Confidence 444445555566666666665553 3455556666666666666666655555566666666666666666554444556
Q ss_pred cCCCCCEEECCCCcceecCCcCccCCC-CCCeEeCcCCcCcc
Q 047977 525 ECRNLSNLQLDRNKISGGIPAELGNLT-RLGVLSLDSNELTG 565 (569)
Q Consensus 525 ~~~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~ 565 (569)
.+++|+.|++++|.+++..+..+..++ +|++|++++|++++
T Consensus 221 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 666666666666666655565566553 56666666666654
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=2.1e-30 Score=271.17 Aligned_cols=297 Identities=12% Similarity=0.015 Sum_probs=144.7
Q ss_pred CCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcce---eeCCccccCCCCCcEEecccccccccCCccccCCCC
Q 047977 259 NLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFM---GNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTS 335 (569)
Q Consensus 259 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 335 (569)
.+++|+.|++++|.+.+ ++ ..+..+++|+.++++..... ......+..+++|+.+.++++... .++..+..+++
T Consensus 218 ~~~~L~~L~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~ 294 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILE-LV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQ 294 (592)
T ss_dssp HCTTCCEEECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGG
T ss_pred hCCCCcEEeccCccHHH-HH-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCC
Confidence 44555555555544432 22 22444455555555432111 011223344555555555553222 33444455556
Q ss_pred CCEEEccCCccccccC-cccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccC-----------Cccccc-CCccc
Q 047977 336 LEKLDLSGNQLSGTIP-PTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNT-----------NQLHGE-LPENI 402 (569)
Q Consensus 336 L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-----------~~~~~~-~~~~~ 402 (569)
|++|++++|.+.+... ..+..+++|++|++.++.....+......+++|++|++++ +.++.. +....
T Consensus 295 L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~ 374 (592)
T 3ogk_B 295 IRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA 374 (592)
T ss_dssp CCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH
T ss_pred CcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHH
Confidence 6666666555432221 2234556666666652221111222223455566666652 233221 11123
Q ss_pred cCCCCCCEEEccCCcccccCCchhhccCCCCceEEcc----cCcCccc-----cChhhhCCCCCcEEEccCCc--ceeeC
Q 047977 403 SRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFS----NNSFSGE-----LPYELCSGFALEELTVNGNN--FTGSL 471 (569)
Q Consensus 403 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~----~~~~~~~-----~~~~~~~~~~L~~L~l~~~~--~~~~~ 471 (569)
..+++|+.|.++.+.+++..+..+....++|+.|+++ .+.+++. ++..+..+++|+.|+++.|. +++..
T Consensus 375 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~ 454 (592)
T 3ogk_B 375 QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG 454 (592)
T ss_dssp HHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred hhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH
Confidence 3456666666655555554444444422366666665 3344431 22234456677777776543 33322
Q ss_pred Cccc-cCCCCCcEEEccCCcccc-chhhhhcCCCCCcEEeCcCCcccccC-CcCcccCCCCCEEECCCCcceecCCcCc-
Q 047977 472 PACM-RNCSNLNRVRFDGNQFTG-NITRAFGVHPRLDFIRLSGNHFIGEI-SPDWGECRNLSNLQLDRNKISGGIPAEL- 547 (569)
Q Consensus 472 ~~~l-~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~n~~~~~~~~~l- 547 (569)
+..+ ..+++|++|++++|.+++ ..+..+..+++|++|++++|++++.. +...+.+++|+.|++++|+++......+
T Consensus 455 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~ 534 (592)
T 3ogk_B 455 LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQ 534 (592)
T ss_dssp HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGG
T ss_pred HHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHH
Confidence 2222 346667777777776654 23344566677777777777654332 2224556777777777777665443333
Q ss_pred cCCCCCCeEeC
Q 047977 548 GNLTRLGVLSL 558 (569)
Q Consensus 548 ~~l~~L~~L~l 558 (569)
+.++.++...+
T Consensus 535 ~~~p~l~~~~~ 545 (592)
T 3ogk_B 535 MARPYWNIELI 545 (592)
T ss_dssp GCCTTEEEEEE
T ss_pred HhCCCcEEEEe
Confidence 34555554433
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=4.6e-30 Score=268.55 Aligned_cols=378 Identities=14% Similarity=0.061 Sum_probs=262.5
Q ss_pred CCCCCcEEEcccCcceecCCccccC-CCC-CCEEEcccCCC-Cc-CCCcCCcCCCCCCEEEcccccceec----cCccCc
Q 047977 187 LMSNIQLVELFNNSFTGQIPSSLGQ-LKN-LQHLDLRMNAL-NS-TIPPELGLCTNLSFLALAMNQLSGG----LPLSLS 258 (569)
Q Consensus 187 ~~~~L~~L~l~~~~~~~~~~~~l~~-l~~-L~~L~l~~~~~-~~-~~~~~~~~~~~L~~l~l~~~~~~~~----~~~~l~ 258 (569)
.+++|++|++++|.+.+..+.++.. ++. |++|++++|.. .. ........+++|++|++++|.+++. ......
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 4556666666666554433333333 233 77777766541 11 0111223567777777777766543 222345
Q ss_pred CCCCCCEEeCcCCcCcc---ccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEeccccccc---ccCCccccC
Q 047977 259 NLSRLNELGLSDNFLSG---EISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFS---GPIPSEIGK 332 (569)
Q Consensus 259 ~~~~L~~L~l~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~l~~ 332 (569)
.+++|+.|+++++.+.+ ......+..+++|+.|++++|.+.+ ++..+..+++|++|.++..... ...+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 67889999998887751 1222335678999999999998874 5567888999999999864322 234456778
Q ss_pred CCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCC-ccccCCCCCCEEEccCCcccccCCccccCCCCCCEE
Q 047977 333 LTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIP-PEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKF 411 (569)
Q Consensus 333 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 411 (569)
+++|+.+.++++... ..+..+..+++|++|++++|.++.... ..+..+++|+.|+++++.....++.....+++|+.|
T Consensus 269 ~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp CTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred cccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence 899999999986443 566677889999999999999653322 345789999999998443333344445678999999
Q ss_pred EccC-----------CcccccCCchhhccCCCCceEEcccCcCccccChhhhC-CCCCcEEEcc----CCcceee-----
Q 047977 412 SVFT-----------NNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCS-GFALEELTVN----GNNFTGS----- 470 (569)
Q Consensus 412 ~l~~-----------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~~----- 470 (569)
++++ +.++......+....++|++|+++.+.+++..+..+.. +++|+.|+++ .+.+++.
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~ 427 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence 9994 44543322233332349999999989998776666665 8999999997 4556532
Q ss_pred CCccccCCCCCcEEEccCCc--cccchhhhhc-CCCCCcEEeCcCCcccccC-CcCcccCCCCCEEECCCCcceec-CCc
Q 047977 471 LPACMRNCSNLNRVRFDGNQ--FTGNITRAFG-VHPRLDFIRLSGNHFIGEI-SPDWGECRNLSNLQLDRNKISGG-IPA 545 (569)
Q Consensus 471 ~~~~l~~~~~L~~L~l~~~~--~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~n~~~~~-~~~ 545 (569)
++..+.++++|++|++++|. +++.....++ .+++|++|++++|++++.. +..+..+++|+.|++++|.+++. .+.
T Consensus 428 ~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 507 (592)
T 3ogk_B 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA 507 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHH
T ss_pred HHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHH
Confidence 22336779999999998765 5555554444 5899999999999987533 34468899999999999998754 333
Q ss_pred CccCCCCCCeEeCcCCcCccc
Q 047977 546 ELGNLTRLGVLSLDSNELTGK 566 (569)
Q Consensus 546 ~l~~l~~L~~L~l~~n~~~~~ 566 (569)
....+++|++|++++|++++.
T Consensus 508 ~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 508 AVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHCSSCCEEEEESCBCCTT
T ss_pred HHHhcCccCeeECcCCcCCHH
Confidence 446799999999999999865
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=6.3e-28 Score=234.66 Aligned_cols=274 Identities=17% Similarity=0.140 Sum_probs=159.4
Q ss_pred CCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEE
Q 047977 260 LSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKL 339 (569)
Q Consensus 260 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 339 (569)
++.....+.+++.++ .++.. -.++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..|..+++|++|
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~---~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSG---LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTT---CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCcc-ccccc---ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 344445666666655 44432 22467777777777776555567777777777777777776556667777777777
Q ss_pred EccCCccccccCcccccCCCCCEEEcccCcccccCC-ccccCCCCCCEEEccCCc-ccccCCccccCCCCCCEEEccCCc
Q 047977 340 DLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIP-PEIGSMASLVAFDVNTNQ-LHGELPENISRLVNLNKFSVFTNN 417 (569)
Q Consensus 340 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~l~l~~~~ 417 (569)
++++|.+....+..+..+++|++|++++|+++.... ..+..+++|++|++++|. +....+..+..+++|+.+++++|.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 777777765444456777777777777777763333 356667777777777763 443334556666667777776666
Q ss_pred ccccCCchhhccCCCCceEEcccCcCccccCh-hhhCCCCCcEEEccCCcceeeCCccc---cCCCCCcEEEccCCcccc
Q 047977 418 FSGSIPGDFGKFSPSLINVSFSNNSFSGELPY-ELCSGFALEELTVNGNNFTGSLPACM---RNCSNLNRVRFDGNQFTG 493 (569)
Q Consensus 418 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~ 493 (569)
+++..+..+..++ +|+.|++++|.+. .++. .+..+++|+.|++++|++++..+..+ ...+.++.++++++.+.+
T Consensus 186 l~~~~~~~l~~l~-~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~ 263 (353)
T 2z80_A 186 LQSYEPKSLKSIQ-NVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263 (353)
T ss_dssp CCEECTTTTTTCS-EEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH
T ss_pred cCccCHHHHhccc-cCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC
Confidence 6665566665555 6666666666654 2232 22335666666666666553322222 233445555555554433
Q ss_pred ----chhhhhcCCCCCcEEeCcCCcccccCCcC-cccCCCCCEEECCCCcce
Q 047977 494 ----NITRAFGVHPRLDFIRLSGNHFIGEISPD-WGECRNLSNLQLDRNKIS 540 (569)
Q Consensus 494 ----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~n~~~ 540 (569)
.+|..++.+++|++|++++|.++ .+|.. |+.+++|+.|++++|++.
T Consensus 264 ~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 264 ESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCcc
Confidence 23444455555555555555554 22322 344555555555555444
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=6.9e-27 Score=223.88 Aligned_cols=234 Identities=18% Similarity=0.247 Sum_probs=155.0
Q ss_pred CCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEE
Q 047977 309 LTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFD 388 (569)
Q Consensus 309 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 388 (569)
.+.++.|++++|.++ .+|..+..+++|++|++++|.+. .++..+..+++|++|++++|.++ .++..+..+++|+.|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 456777777777776 55666666777777777777776 56666777777777777777766 5566666777777777
Q ss_pred ccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcce
Q 047977 389 VNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFT 468 (569)
Q Consensus 389 l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 468 (569)
+++|...+.+|..+.. . ..+..+..++ +|++|++++|.+. .+|..+..+++|++|++++|.++
T Consensus 157 L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~-~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 157 IRACPELTELPEPLAS------T---------DASGEHQGLV-NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEETTCCCCCSCSEE------E---------C-CCCEEEST-TCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred CCCCCCccccChhHhh------c---------cchhhhccCC-CCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 7776665555544332 0 0001122233 6666666666665 56666666677777777777766
Q ss_pred eeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCcc
Q 047977 469 GSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELG 548 (569)
Q Consensus 469 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~ 548 (569)
.+|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+.
T Consensus 220 -~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 220 -ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp -CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred -cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 4555666677777777777777666666677777777777777766666676777777777777777777767777777
Q ss_pred CCCCCCeEeCcCCcC
Q 047977 549 NLTRLGVLSLDSNEL 563 (569)
Q Consensus 549 ~l~~L~~L~l~~n~~ 563 (569)
.+++|+.+++..+.+
T Consensus 299 ~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 299 QLPANCIILVPPHLQ 313 (328)
T ss_dssp GSCTTCEEECCGGGS
T ss_pred hccCceEEeCCHHHH
Confidence 777777777665544
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=3.7e-26 Score=228.97 Aligned_cols=248 Identities=17% Similarity=0.157 Sum_probs=150.9
Q ss_pred CcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEccc
Q 047977 288 LESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFF 367 (569)
Q Consensus 288 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 367 (569)
...++.++..+. .+|..+ .++++.|++++|.+....+..|..+++|++|++++|.+....+..|.++++|++|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 455666655554 344433 25667777777766655556666667777777777766655556666666666666666
Q ss_pred CcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCcccc
Q 047977 368 NNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGEL 447 (569)
Q Consensus 368 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 447 (569)
|.++......+..+++|+.|++++|.+....+..+..+++|+.|++++|...+.++
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~------------------------ 177 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS------------------------ 177 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC------------------------
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC------------------------
Confidence 66664444455666666666666666654333445555555555555432221221
Q ss_pred ChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCC
Q 047977 448 PYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECR 527 (569)
Q Consensus 448 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~ 527 (569)
+..+..+++|++|++++|+++ .+| .+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..++
T Consensus 178 ~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 255 (440)
T 3zyj_A 178 EGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ 255 (440)
T ss_dssp TTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCT
T ss_pred cchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCC
Confidence 223445556666666666665 333 356666677777777766666666666677777777777766666666666667
Q ss_pred CCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCc
Q 047977 528 NLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELT 564 (569)
Q Consensus 528 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 564 (569)
+|+.|++++|++++..+..+..+++|++|++++||+.
T Consensus 256 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 256 SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 7777777777766666666666677777777777654
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=5e-26 Score=228.88 Aligned_cols=247 Identities=18% Similarity=0.186 Sum_probs=157.3
Q ss_pred CcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEccc
Q 047977 288 LESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFF 367 (569)
Q Consensus 288 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 367 (569)
...++.++..+. .+|..+ .++++.|++++|.+++..+..|..+++|++|++++|.+....+..|.++++|++|++++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 345555555554 334333 24666666666666655555666666666666666666655555566666666666666
Q ss_pred CcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCcccc
Q 047977 368 NNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGEL 447 (569)
Q Consensus 368 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 447 (569)
|.++......+..+++|++|++++|.+....+..+..++ +|+.|++++|...+.+
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-------------------------~L~~L~l~~~~~l~~i 187 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP-------------------------SLMRLDLGELKKLEYI 187 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCT-------------------------TCCEEECCCCTTCCEE
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCC-------------------------cccEEeCCCCCCcccc
Confidence 665544444455555566665555555533333444444 4555555543222222
Q ss_pred C-hhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccC
Q 047977 448 P-YELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGEC 526 (569)
Q Consensus 448 ~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~ 526 (569)
+ ..+..+++|+.|++++|+++ .++ .+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 265 (452)
T 3zyi_A 188 SEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265 (452)
T ss_dssp CTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred ChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC
Confidence 2 24555667777777777776 333 36677778888888888877777777888888888888888777777777888
Q ss_pred CCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCc
Q 047977 527 RNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELT 564 (569)
Q Consensus 527 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 564 (569)
++|+.|++++|++++..+..+..+++|++|++++||+.
T Consensus 266 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 88888888888887766677777888888888888765
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=6.3e-27 Score=222.93 Aligned_cols=280 Identities=19% Similarity=0.205 Sum_probs=201.5
Q ss_pred CEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEeccccccccc--CCccccCCCCCCEEEc
Q 047977 264 NELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGP--IPSEIGKLTSLEKLDL 341 (569)
Q Consensus 264 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l 341 (569)
+.++.+++.++ .++.. -.++++.|++++|.+.+..+..+..+++|++|++++|.++.. .+..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~-~ip~~---~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCS-SCCSC---CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcc-cCCCC---CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 46777777766 45543 236899999999999855445578999999999999998733 2456677999999999
Q ss_pred cCCccccccCcccccCCCCCEEEcccCcccccCC-ccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccc
Q 047977 342 SGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIP-PEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSG 420 (569)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 420 (569)
++|.+. ..+..+..+++|++|++++|.++.... ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 999988 456678899999999999999986544 578899999999999999987777778888899999999888875
Q ss_pred -cCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhh
Q 047977 421 -SIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAF 499 (569)
Q Consensus 421 -~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l 499 (569)
..|..+..++ +|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+
T Consensus 165 ~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 165 NFLPDIFTELR-NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp GEECSCCTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred ccchhHHhhCc-CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 4555665555 77777777777765556666666777777777777765444556667777777777777766666666
Q ss_pred cCCC-CCcEEeCcCCcccccCCc-C-cccCCCCCEEECCCCcceecCCcCccC
Q 047977 500 GVHP-RLDFIRLSGNHFIGEISP-D-WGECRNLSNLQLDRNKISGGIPAELGN 549 (569)
Q Consensus 500 ~~l~-~L~~L~l~~~~~~~~~~~-~-l~~~~~L~~L~l~~n~~~~~~~~~l~~ 549 (569)
..++ +|++|++++|++...-.. . ..-+...+.+.+..+.+.-..|..+++
T Consensus 244 ~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 296 (306)
T ss_dssp CCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred HhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence 6663 677777777766532110 0 111223334444555555445555444
No 57
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=2e-26 Score=220.68 Aligned_cols=236 Identities=17% Similarity=0.208 Sum_probs=198.4
Q ss_pred CCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEE
Q 047977 284 NWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSL 363 (569)
Q Consensus 284 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 363 (569)
..+.++.|+++++.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .++..+..+++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 3578999999999988 67777888999999999999999 88888999999999999999998 778889999999999
Q ss_pred EcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcC
Q 047977 364 QLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSF 443 (569)
Q Consensus 364 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 443 (569)
++++|...+.++..+.. . .....+..+++|+.|++++|.++ .+|..+..++ +|++|++++|.+
T Consensus 156 ~L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~-~L~~L~L~~N~l 218 (328)
T 4fcg_A 156 SIRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ-NLKSLKIRNSPL 218 (328)
T ss_dssp EEEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCT-TCCEEEEESSCC
T ss_pred ECCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCC-CCCEEEccCCCC
Confidence 99998877666654432 1 11234566777777777777777 6666676666 888888888887
Q ss_pred ccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCc
Q 047977 444 SGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDW 523 (569)
Q Consensus 444 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l 523 (569)
. .++..+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..++.+++|++|++++|++.+.+|..+
T Consensus 219 ~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 219 S-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp C-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred C-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 7 466678888899999999988888888889999999999999999888889889999999999999999988999999
Q ss_pred ccCCCCCEEECCCCcce
Q 047977 524 GECRNLSNLQLDRNKIS 540 (569)
Q Consensus 524 ~~~~~L~~L~l~~n~~~ 540 (569)
+.+++|+.+++..+.+.
T Consensus 298 ~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 298 AQLPANCIILVPPHLQA 314 (328)
T ss_dssp GGSCTTCEEECCGGGSC
T ss_pred hhccCceEEeCCHHHHH
Confidence 99999999998877655
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=4.1e-26 Score=221.82 Aligned_cols=253 Identities=19% Similarity=0.186 Sum_probs=127.8
Q ss_pred CCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEc
Q 047977 262 RLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDL 341 (569)
Q Consensus 262 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 341 (569)
+|+.|++++|.+. .++...+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 53 ~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 53 AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred cCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 5555555555554 333333555555555555555555444445555555555555555555333333555555555555
Q ss_pred cCCccccccC-cccccCCCCCEEEcccCc-ccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccc
Q 047977 342 SGNQLSGTIP-PTLWNLTNLLSLQLFFNN-LSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFS 419 (569)
Q Consensus 342 ~~~~~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 419 (569)
++|.+..... ..+..+++|++|++++|. +....+..+..+++|++|++++|.+.+..+..+..+++|+.+++++|.+.
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 5555553322 245555555555555552 33333445555555555555555555444555555555555555555553
Q ss_pred ccCCchhhccCCCCceEEcccCcCccccChhh---hCCCCCcEEEccCCccee----eCCccccCCCCCcEEEccCCccc
Q 047977 420 GSIPGDFGKFSPSLINVSFSNNSFSGELPYEL---CSGFALEELTVNGNNFTG----SLPACMRNCSNLNRVRFDGNQFT 492 (569)
Q Consensus 420 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~ 492 (569)
.++..+....++|+.|++++|.+.+..+..+ .....++.++++++.+.+ .+|..+.++++|++|++++|.++
T Consensus 212 -~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 212 -LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK 290 (353)
T ss_dssp -THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred -cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence 2222222222355555555555543322211 123445555555554433 23344555555555555555555
Q ss_pred cchhhhhcCCCCCcEEeCcCCccc
Q 047977 493 GNITRAFGVHPRLDFIRLSGNHFI 516 (569)
Q Consensus 493 ~~~~~~l~~l~~L~~L~l~~~~~~ 516 (569)
...+..|+.+++|++|++++|++.
T Consensus 291 ~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 291 SVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCHHHHhcCCCCCEEEeeCCCcc
Confidence 333333455555555555555554
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=3.5e-26 Score=215.35 Aligned_cols=268 Identities=18% Similarity=0.209 Sum_probs=177.5
Q ss_pred cEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccC
Q 047977 289 ESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFN 368 (569)
Q Consensus 289 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 368 (569)
+.++.++..+. .+|..+ .+++++|++++|.+++..+..|..+++|++|++++|.+....+..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 34555554444 233222 346666666666666544455666666666666666666555556666666666666666
Q ss_pred c-ccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCcccc
Q 047977 369 N-LSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGEL 447 (569)
Q Consensus 369 ~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 447 (569)
. +....+..+..+++|++|++++|.+.+..+..+..+++|+.+++++|.+++..+..+..++ +|+.|++++|.+.+..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG-NLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCC-CccEEECCCCcccccC
Confidence 5 4444455566666677777776666655555666677777777777777655444555555 7888888888777544
Q ss_pred ChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCC
Q 047977 448 PYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECR 527 (569)
Q Consensus 448 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~ 527 (569)
+..+..+++|+.|++++|.+++..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|++...-+.. ....
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~ 248 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWA 248 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHH
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHH
Confidence 455777888889999888888777888888899999999999888777777888999999999999876332211 1123
Q ss_pred CCCEEECCCCcceecCCcCccC--CCCCCeEeCcCC
Q 047977 528 NLSNLQLDRNKISGGIPAELGN--LTRLGVLSLDSN 561 (569)
Q Consensus 528 ~L~~L~l~~n~~~~~~~~~l~~--l~~L~~L~l~~n 561 (569)
.++.+..+.+.+....|..+++ +..++..++.||
T Consensus 249 ~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 249 WLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp HHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred HHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 3555556777777677777654 555666666655
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.7e-25 Score=210.64 Aligned_cols=224 Identities=20% Similarity=0.197 Sum_probs=143.1
Q ss_pred cEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCC
Q 047977 313 QYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTN 392 (569)
Q Consensus 313 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 392 (569)
+.++.+++.++ .+|..+ .++|++|++++|.+....+..|..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 56677676666 444433 357888888888887666667777888888888888777666667777777888888777
Q ss_pred c-ccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeC
Q 047977 393 Q-LHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSL 471 (569)
Q Consensus 393 ~-~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 471 (569)
. +....+..+..+++|+.|++++|.+++..+..+..++ +|++|++++|.+.+..+..+..+++|++|++++|+++...
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA-ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc-CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 6 5544455666677777777777766655555555554 6666666666665443344555566666666666665444
Q ss_pred CccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcce
Q 047977 472 PACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKIS 540 (569)
Q Consensus 472 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 540 (569)
+..+.++++|++|++++|.+.+..+..++.+++|++|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 444556666666666666665555555666666666666666665444444556666666666666555
No 61
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=6.3e-29 Score=260.12 Aligned_cols=436 Identities=14% Similarity=0.120 Sum_probs=252.8
Q ss_pred EEEcccCccccCCchhhhhcCCCCcEEeccCCccccc---CCc------------CCCCCCCCCEEEccCCccccCCCcC
Q 047977 120 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGK---LSP------------NVSKLSNLTVLRLATNKFSGPIPGD 184 (569)
Q Consensus 120 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~------------~l~~~~~L~~L~l~~~~~~~~~~~~ 184 (569)
.+++..+.. ..+..++..+++|+++++.++..... .+. ....+++|++|+++++.++......
T Consensus 47 ~l~~~~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 47 KVFIGNCYA--VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp EEEESSTTS--SCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred EEeeccccc--cCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 455544332 34556678889999999998753211 111 1235678888888888766544444
Q ss_pred cC-CCCCCcEEEcccCc-ceec-CCccccCCCCCCEEEcccCCCCcCCCcCC----cCCCCCCEEEccccc--cee-ccC
Q 047977 185 IG-LMSNIQLVELFNNS-FTGQ-IPSSLGQLKNLQHLDLRMNALNSTIPPEL----GLCTNLSFLALAMNQ--LSG-GLP 254 (569)
Q Consensus 185 l~-~~~~L~~L~l~~~~-~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~l~l~~~~--~~~-~~~ 254 (569)
+. .+++|++|++.+|. +... ++.....+++|++|++++|.+.+....++ ..+++|++++++++. +.. ...
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence 43 57888888888883 3321 33334467888888888887655443333 356688888887775 211 111
Q ss_pred ccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCc-------ceeeCCccccCCCCCcEE-ecccccccccC
Q 047977 255 LSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNS-------FMGNIPPEIGLLTKLQYL-FLYRNHFSGPI 326 (569)
Q Consensus 255 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~~L~~L-~l~~~~~~~~~ 326 (569)
.....+++|+.|++++|...+.+ ...+..+++|+.+++..+. +. .++..+.++++|+.+ .+.+.... .+
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~~~~L~~Ls~~~~~~~~-~l 281 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLEKL-ATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSGCKELRCLSGFWDAVPA-YL 281 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHHHH-HHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHTCTTCCEEECCBTCCGG-GG
T ss_pred HHHHhCCCCcEEecCCCCcHHHH-HHHHhcCCcceEcccccccCccchhhHH-HHHHHHhcCCCcccccCCcccchh-hH
Confidence 11234678888888877433232 2335667778888765543 11 122345667777777 34332221 33
Q ss_pred CccccCCCCCCEEEccCCccccccC-cccccCCCCCEEEcccCccccc-CCccccCCCCCCEEEccC---------Cccc
Q 047977 327 PSEIGKLTSLEKLDLSGNQLSGTIP-PTLWNLTNLLSLQLFFNNLSGT-IPPEIGSMASLVAFDVNT---------NQLH 395 (569)
Q Consensus 327 ~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~---------~~~~ 395 (569)
+..+..+++|++|++++|.+.+... ..+..+++|++|++.+| +... .......+++|++|++.+ +.++
T Consensus 282 ~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~ 360 (594)
T 2p1m_B 282 PAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALT 360 (594)
T ss_dssp GGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCC
T ss_pred HHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCC
Confidence 3344456788888888877553322 22456778888888877 3321 222223467788887743 2333
Q ss_pred ccCCccc-cCCCCCCEEEccCCcccccCCchhhccCCCCceEEcc--c----CcCcc-----ccChhhhCCCCCcEEEcc
Q 047977 396 GELPENI-SRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFS--N----NSFSG-----ELPYELCSGFALEELTVN 463 (569)
Q Consensus 396 ~~~~~~~-~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~--~----~~~~~-----~~~~~~~~~~~L~~L~l~ 463 (569)
+.....+ ..+++|+.+.+..+.+++.....+....++|+.|+++ + +.+++ .++..+..+++|+.|+++
T Consensus 361 ~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~ 440 (594)
T 2p1m_B 361 EQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS 440 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeec
Confidence 2211122 2367777777766666654444444322377777777 2 23331 111224556777777776
Q ss_pred CCcceeeCCccccC-CCCCcEEEccCCccccchhhhh-cCCCCCcEEeCcCCcccccCCc-CcccCCCCCEEECCCCcce
Q 047977 464 GNNFTGSLPACMRN-CSNLNRVRFDGNQFTGNITRAF-GVHPRLDFIRLSGNHFIGEISP-DWGECRNLSNLQLDRNKIS 540 (569)
Q Consensus 464 ~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~n~~~ 540 (569)
+ .+++.....+.. +++|++|++++|.+++.....+ ..+++|++|++++|++++.... ....+++|+.|++++|+++
T Consensus 441 ~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 441 G-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp S-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred C-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 6 444333333433 6777777777777765544444 5677777777777777543333 3445677777777777775
Q ss_pred ecCCcCc-cCCCCCCeEeCcCCc
Q 047977 541 GGIPAEL-GNLTRLGVLSLDSNE 562 (569)
Q Consensus 541 ~~~~~~l-~~l~~L~~L~l~~n~ 562 (569)
......+ +.+++|+...+..+.
T Consensus 520 ~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 520 FGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp HHHHHHHHHHCTTEEEEEECSSS
T ss_pred HHHHHHHHHhCCCCEEEEecCCC
Confidence 4433334 456666665555543
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=5.3e-25 Score=220.56 Aligned_cols=248 Identities=21% Similarity=0.222 Sum_probs=164.4
Q ss_pred CCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEcc
Q 047977 21 NLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLC 100 (569)
Q Consensus 21 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 100 (569)
..+.++.++..+. .+|..+. +++++|++++|.+....+..|.++++|++|++++|.+..+....|.++++|++|+++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3456666666666 4455444 566777777777665555666777777777777776666666666677777777777
Q ss_pred cccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCc-ccccCCcCCCCCCCCCEEEccCCcccc
Q 047977 101 YNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQ-FQGKLSPNVSKLSNLTVLRLATNKFSG 179 (569)
Q Consensus 101 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~ 179 (569)
+|.+....+..+..+++|++|++++|.+. .++...|..+++|++|+++++. +.......+..+++|++|++++|.+..
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence 77766444455666777777777777666 3444455667777777776633 333333456667777777777776653
Q ss_pred CCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcC
Q 047977 180 PIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSN 259 (569)
Q Consensus 180 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~ 259 (569)
. + .+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++...+..+..
T Consensus 200 ~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 200 I-P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277 (440)
T ss_dssp C-C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred c-c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence 3 2 4666677777777777777666666777777777777777777666667777777777777777777666666667
Q ss_pred CCCCCEEeCcCCcCc
Q 047977 260 LSRLNELGLSDNFLS 274 (569)
Q Consensus 260 ~~~L~~L~l~~~~~~ 274 (569)
+++|+.|++++|.+.
T Consensus 278 l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 278 LHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTCCEEECCSSCEE
T ss_pred ccCCCEEEcCCCCcc
Confidence 777777777777654
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=4.2e-25 Score=222.11 Aligned_cols=248 Identities=22% Similarity=0.210 Sum_probs=189.6
Q ss_pred CCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEcc
Q 047977 21 NLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLC 100 (569)
Q Consensus 21 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 100 (569)
..+.++.++..++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+....+..|.++++|++|+++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3567777777777 4555554 578888888888876667778888888888888888877777778888888888888
Q ss_pred cccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCC-cccccCCcCCCCCCCCCEEEccCCcccc
Q 047977 101 YNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDN-QFQGKLSPNVSKLSNLTVLRLATNKFSG 179 (569)
Q Consensus 101 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 179 (569)
+|.+....+..+..+++|++|++++|.+. .++...|..+++|++|+++++ .+.......+..+++|+.|++++|.+..
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 88887655666777888888888888877 455556678888888888874 3443344467778888888888887764
Q ss_pred CCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcC
Q 047977 180 PIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSN 259 (569)
Q Consensus 180 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~ 259 (569)
. ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.+++++|.++...+..+..
T Consensus 211 ~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 211 M--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp C--CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred c--ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 4 34677888888888888888777777888888888888888888777777888888888888888888766667778
Q ss_pred CCCCCEEeCcCCcCc
Q 047977 260 LSRLNELGLSDNFLS 274 (569)
Q Consensus 260 ~~~L~~L~l~~~~~~ 274 (569)
+++|+.|++++|.+.
T Consensus 289 l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 289 LRYLVELHLHHNPWN 303 (452)
T ss_dssp CTTCCEEECCSSCEE
T ss_pred ccCCCEEEccCCCcC
Confidence 888888888888764
No 64
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=4.9e-29 Score=260.91 Aligned_cols=439 Identities=14% Similarity=0.091 Sum_probs=295.8
Q ss_pred cEEEcccccccccCCccccCCCCCCEEEcccCccccCC---c-----------hhhhhcCCCCcEEeccCCcccccCCcC
Q 047977 95 THLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLI---P-----------ERLFTNLGKLEYLNLTDNQFQGKLSPN 160 (569)
Q Consensus 95 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~-----------~~~~~~~~~L~~L~l~~~~~~~~~~~~ 160 (569)
+.++++.+... .....+..+++|++|++.++...... + ..++..+++|++|+++++.+.+.....
T Consensus 46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 35666555432 22334667899999999987532111 1 233467899999999999877544444
Q ss_pred CC-CCCCCCEEEccCC-ccccC-CCcCcCCCCCCcEEEcccCcceecCCcccc----CCCCCCEEEcccCC--CCcC-CC
Q 047977 161 VS-KLSNLTVLRLATN-KFSGP-IPGDIGLMSNIQLVELFNNSFTGQIPSSLG----QLKNLQHLDLRMNA--LNST-IP 230 (569)
Q Consensus 161 l~-~~~~L~~L~l~~~-~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~----~l~~L~~L~l~~~~--~~~~-~~ 230 (569)
+. .+++|++|++++| .+... .+.....+++|++|++++|.+.+..+.++. .+++|++|++++|. +... ..
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence 43 5899999999998 44322 222334789999999999997764444443 67799999999886 2211 11
Q ss_pred cCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCc------cccCccccCCCCCCcEE-EccCCcceeeCC
Q 047977 231 PELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLS------GEISANLIGNWTELESL-QIQNNSFMGNIP 303 (569)
Q Consensus 231 ~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~------~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~ 303 (569)
.....+++|+++++.+|......+..+..+++|+.|.+..+... ..+.. .+.++++|+.+ .+.+... ..++
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~-~l~~~~~L~~Ls~~~~~~~-~~l~ 282 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV-ALSGCKELRCLSGFWDAVP-AYLP 282 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH-HHHTCTTCCEEECCBTCCG-GGGG
T ss_pred HHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH-HHhcCCCcccccCCcccch-hhHH
Confidence 12345799999999988332235566778899999997765420 11222 36788999998 4443322 1234
Q ss_pred ccccCCCCCcEEecccccccccC-CccccCCCCCCEEEccCCcccccc-CcccccCCCCCEEEccc---------Ccccc
Q 047977 304 PEIGLLTKLQYLFLYRNHFSGPI-PSEIGKLTSLEKLDLSGNQLSGTI-PPTLWNLTNLLSLQLFF---------NNLSG 372 (569)
Q Consensus 304 ~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~---------~~~~~ 372 (569)
..+..+++|++|++++|.+++.. ...+..+++|++|++++| +.+.. ......+++|++|++.+ +.++.
T Consensus 283 ~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~ 361 (594)
T 2p1m_B 283 AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE 361 (594)
T ss_dssp GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH
T ss_pred HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH
Confidence 44446799999999999876432 223568899999999998 44332 22334689999999954 23332
Q ss_pred cCCccc-cCCCCCCEEEccCCcccccCCcccc-CCCCCCEEEcc--C----CcccccC-----CchhhccCCCCceEEcc
Q 047977 373 TIPPEI-GSMASLVAFDVNTNQLHGELPENIS-RLVNLNKFSVF--T----NNFSGSI-----PGDFGKFSPSLINVSFS 439 (569)
Q Consensus 373 ~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~l~l~--~----~~~~~~~-----~~~~~~~~~~L~~L~l~ 439 (569)
.....+ ..+++|+.|.+..+.+++.....+. .+++|+.++++ + +.++... +..+..++ +|+.|+++
T Consensus 362 ~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~L~~L~L~ 440 (594)
T 2p1m_B 362 QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCK-DLRRLSLS 440 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCT-TCCEEECC
T ss_pred HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCC-CccEEeec
Confidence 211122 3489999998888888755444443 58999999998 3 3444211 11234455 99999998
Q ss_pred cCcCccccChhhhC-CCCCcEEEccCCcceeeCCccc-cCCCCCcEEEccCCccccchhh-hhcCCCCCcEEeCcCCccc
Q 047977 440 NNSFSGELPYELCS-GFALEELTVNGNNFTGSLPACM-RNCSNLNRVRFDGNQFTGNITR-AFGVHPRLDFIRLSGNHFI 516 (569)
Q Consensus 440 ~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~ 516 (569)
+ .+++.....+.. +++|+.|++++|.+++.....+ .++++|++|++++|.+++.... ....+++|++|++++|+++
T Consensus 441 ~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 441 G-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp S-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred C-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 7 666555555655 8899999999999875544444 6799999999999999655443 4556899999999999986
Q ss_pred ccCCcCc-ccCCCCCEEECCCCcc
Q 047977 517 GEISPDW-GECRNLSNLQLDRNKI 539 (569)
Q Consensus 517 ~~~~~~l-~~~~~L~~L~l~~n~~ 539 (569)
......+ ..+|.|+...+..+.-
T Consensus 520 ~~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 520 FGACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp HHHHHHHHHHCTTEEEEEECSSSC
T ss_pred HHHHHHHHHhCCCCEEEEecCCCc
Confidence 4444444 5678887777766643
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.9e-27 Score=225.94 Aligned_cols=240 Identities=16% Similarity=0.144 Sum_probs=110.6
Q ss_pred cCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCC
Q 047977 282 IGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLL 361 (569)
Q Consensus 282 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 361 (569)
+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+ +..+++|++|++++|.+.+. ...++|+
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~ 102 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIE 102 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-----EECTTCC
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-----cCCCCcC
Confidence 4444555555555555554433445555555555555555543321 45555555555555554421 1224555
Q ss_pred EEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccC
Q 047977 362 SLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNN 441 (569)
Q Consensus 362 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 441 (569)
+|++++|.++.... ..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+.
T Consensus 103 ~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-------------- 165 (317)
T 3o53_A 103 TLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA-------------- 165 (317)
T ss_dssp EEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG--------------
T ss_pred EEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh--------------
Confidence 55555555443221 1234455555555544433333444444444444444444433333332
Q ss_pred cCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCc
Q 047977 442 SFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISP 521 (569)
Q Consensus 442 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 521 (569)
..+++|++|++++|.++.. + ....+++|++|++++|.+++..+ .+..+++|++|++++|.+. .+|.
T Consensus 166 ----------~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~ 231 (317)
T 3o53_A 166 ----------ASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEK 231 (317)
T ss_dssp ----------GGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECT
T ss_pred ----------hccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhh
Confidence 1344455555555544422 1 11224455555555555543222 2444555555555555544 2344
Q ss_pred CcccCCCCCEEECCCCcce-ecCCcCccCCCCCCeEeCc
Q 047977 522 DWGECRNLSNLQLDRNKIS-GGIPAELGNLTRLGVLSLD 559 (569)
Q Consensus 522 ~l~~~~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~ 559 (569)
.+..+++|+.|++++|++. +..+..+..+++|+.|+++
T Consensus 232 ~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 4444555555555555544 3344444444444444444
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=4e-27 Score=224.41 Aligned_cols=203 Identities=19% Similarity=0.224 Sum_probs=137.8
Q ss_pred CCCCCEEEcccCcccccCCccc--cCCCCCCEEEccCCcccccCCccccCC-----CCCCEEEccCCcccccCCchhhcc
Q 047977 357 LTNLLSLQLFFNNLSGTIPPEI--GSMASLVAFDVNTNQLHGELPENISRL-----VNLNKFSVFTNNFSGSIPGDFGKF 429 (569)
Q Consensus 357 ~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~l~l~~~~~~~~~~~~~~~~ 429 (569)
+++|++|++++|.+++..+..+ ..+++|+.|++++|.+.+. |..+..+ ++|++|++++|.+.+..+..+..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 4455555555555544344333 4455555555555555533 4444433 666666666666665555555555
Q ss_pred CCCCceEEcccCcCccc--cChhh--hCCCCCcEEEccCCccee---eCCccccCCCCCcEEEccCCccccchh-hhhcC
Q 047977 430 SPSLINVSFSNNSFSGE--LPYEL--CSGFALEELTVNGNNFTG---SLPACMRNCSNLNRVRFDGNQFTGNIT-RAFGV 501 (569)
Q Consensus 430 ~~~L~~L~l~~~~~~~~--~~~~~--~~~~~L~~L~l~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~ 501 (569)
+ +|++|++++|++.+. .+..+ ..+++|++|++++|+++. .....+.++++|++|++++|.+.+..+ ..+..
T Consensus 173 ~-~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 173 P-ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp S-SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred C-CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 5 777777777765443 22233 567888888888888772 112334677889999999998887664 45667
Q ss_pred CCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCccc
Q 047977 502 HPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGK 566 (569)
Q Consensus 502 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 566 (569)
+++|++|++++|.++ .+|..+. ++|+.|++++|++++. |. +..+++|++|++++|+|+++
T Consensus 252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 899999999999988 6677766 8899999999999865 65 88999999999999999874
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1.7e-25 Score=213.69 Aligned_cols=218 Identities=21% Similarity=0.194 Sum_probs=153.1
Q ss_pred CCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEE
Q 047977 332 KLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKF 411 (569)
Q Consensus 332 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 411 (569)
.+++|++|++++|.+....+..|..+++|++|++++|.+++..+ +..+++|++|++++|.+.+ +...++|+.+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-----l~~~~~L~~L 104 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIETL 104 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-----EEECTTCCEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-----ccCCCCcCEE
Confidence 33444444444444443333444444555555555554442221 4445555555555555442 1223566666
Q ss_pred EccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccc-cCCCCCcEEEccCCc
Q 047977 412 SVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACM-RNCSNLNRVRFDGNQ 490 (569)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~ 490 (569)
++++|.+++..+.. + ++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.
T Consensus 105 ~l~~n~l~~~~~~~---~-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 105 HAANNNISRVSCSR---G-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp ECCSSCCSEEEECC---C-SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred ECCCCccCCcCccc---c-CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence 66666665433322 2 378888888888876666677778999999999999987666666 478999999999999
Q ss_pred cccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCc
Q 047977 491 FTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELT 564 (569)
Q Consensus 491 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 564 (569)
+++... ...+++|++|++++|.+.+ +|..+..+++|+.|++++|.+++ +|..+..+++|++|++++|++.
T Consensus 181 l~~~~~--~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 181 IYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCB
T ss_pred Cccccc--ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCcc
Confidence 986532 3469999999999999985 45669999999999999999995 6788999999999999999998
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=2.4e-23 Score=214.16 Aligned_cols=263 Identities=26% Similarity=0.350 Sum_probs=122.2
Q ss_pred CCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEec
Q 047977 238 NLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFL 317 (569)
Q Consensus 238 ~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 317 (569)
+++.++++++.++ .++..+. ++|+.|++++|.++ .++. .+++|+.|++++|.+.+ +|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence 3556666666655 3333232 45666666666554 3332 34556666666655542 332 3455566666
Q ss_pred ccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCccccc
Q 047977 318 YRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGE 397 (569)
Q Consensus 318 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 397 (569)
++|.+++ +|. .+++|+.|++++|.++. ++. .+++|++|++++|.++. ++. .+++|+.|++++|.+. .
T Consensus 109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~ 175 (622)
T 3g06_A 109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT-S 175 (622)
T ss_dssp CSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-C
T ss_pred cCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC-C
Confidence 6555552 222 34455555555555542 222 12555555555555542 111 2345555555555554 2
Q ss_pred CCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccC
Q 047977 398 LPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRN 477 (569)
Q Consensus 398 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 477 (569)
+| ..+++|+.|++++|.+++ +|. .+++|+.|++++|.+. .++. .+++|+.|++++|.++ .+| ..
T Consensus 176 l~---~~~~~L~~L~Ls~N~l~~-l~~----~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~-~lp---~~ 239 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQLAS-LPT----LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLT-SLP---VL 239 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCS-CCC---CC
T ss_pred Cc---ccCCCCcEEECCCCCCCC-CCC----ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccC-cCC---CC
Confidence 33 233455555555555442 211 1124555555555444 2221 1234555555555444 223 22
Q ss_pred CCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcC
Q 047977 478 CSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAE 546 (569)
Q Consensus 478 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~ 546 (569)
+++|+.|++++|.++. +|. .+++|++|++++|.++ .+|..+..+++|+.|++++|.+++..|..
T Consensus 240 l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 240 PSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred CCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence 3445555555554442 222 3444555555555444 33444444455555555555444444433
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=3.4e-25 Score=223.72 Aligned_cols=235 Identities=20% Similarity=0.150 Sum_probs=136.9
Q ss_pred CCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEc
Q 047977 310 TKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDV 389 (569)
Q Consensus 310 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 389 (569)
++|+.|++++|.+++..|..|..+++|++|++++|.+....+ +..+++|++|++++|.++.. ...++|+.|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-----~~~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-----EECTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-----CCCCCcCEEEC
Confidence 355555555555554444455555555555555555543322 55555555555555555421 12255666666
Q ss_pred cCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhh-CCCCCcEEEccCCcce
Q 047977 390 NTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELC-SGFALEELTVNGNNFT 468 (569)
Q Consensus 390 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~ 468 (569)
++|.+.+..+ ..+++|+.|++++|.+++..|..+..++ +|+.|++++|.+.+..|..+. .+++|+.|++++|.++
T Consensus 107 ~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 107 ANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGS-SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred cCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCC-CCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 6665553322 2345666666666666655555555554 666666666666655555554 4666777777777666
Q ss_pred eeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcce-ecCCcCc
Q 047977 469 GSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKIS-GGIPAEL 547 (569)
Q Consensus 469 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~-~~~~~~l 547 (569)
+.. ....+++|+.|++++|.+++..+ .++.+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+. +..|..+
T Consensus 183 ~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 183 DVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp EEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred ccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 432 22346677777777777765433 36666777777777777663 5556666677777777777666 4455555
Q ss_pred cCCCCCCeEeCc
Q 047977 548 GNLTRLGVLSLD 559 (569)
Q Consensus 548 ~~l~~L~~L~l~ 559 (569)
..++.|+.+++.
T Consensus 259 ~~l~~L~~l~~~ 270 (487)
T 3oja_A 259 SKNQRVQTVAKQ 270 (487)
T ss_dssp TTCHHHHHHHHH
T ss_pred HhCCCCcEEecc
Confidence 666666665554
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=1.7e-23 Score=215.26 Aligned_cols=268 Identities=26% Similarity=0.354 Sum_probs=178.1
Q ss_pred CCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEc
Q 047977 214 NLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQI 293 (569)
Q Consensus 214 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 293 (569)
.++.|+++++.+... +..+. ++|+.|++++|.++.. +. .+++|+.|++++|.++ .++. .+++|+.|++
T Consensus 41 ~l~~L~ls~n~L~~l-p~~l~--~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLTTL-PDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCSCC-CSCCC--TTCSEEEECSCCCSCC-CC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEE
T ss_pred CCcEEEecCCCcCcc-ChhhC--CCCcEEEecCCCCCCC-CC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEEC
Confidence 477788877777643 33332 6778888887777633 22 4577888888877766 3433 5677888888
Q ss_pred cCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCccccc
Q 047977 294 QNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGT 373 (569)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 373 (569)
++|.+.+ +|. .+++|+.|++++|.++. +|.. +++|++|++++|.+.. ++. .+++|+.|++++|.++.
T Consensus 109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~- 175 (622)
T 3g06_A 109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS- 175 (622)
T ss_dssp CSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-
T ss_pred cCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-
Confidence 8777764 333 45677788888777763 4432 4677888888877763 222 34677778888877763
Q ss_pred CCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhC
Q 047977 374 IPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCS 453 (569)
Q Consensus 374 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 453 (569)
++ ..+++|+.|++++|.+. .++. ..++|+.|.+++|.++. +|. .+++|+.|++++|.+.+ +| ..
T Consensus 176 l~---~~~~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~l~~-l~~----~~~~L~~L~Ls~N~L~~-lp---~~ 239 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQLA-SLPT---LPSELYKLWAYNNRLTS-LPA----LPSGLKELIVSGNRLTS-LP---VL 239 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSC-CC---CC
T ss_pred Cc---ccCCCCcEEECCCCCCC-CCCC---ccchhhEEECcCCcccc-cCC----CCCCCCEEEccCCccCc-CC---CC
Confidence 33 34577888888877776 3433 24677778887777763 332 22477888888877763 44 34
Q ss_pred CCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCC
Q 047977 454 GFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECR 527 (569)
Q Consensus 454 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~ 527 (569)
+++|+.|++++|.++ .+|. .+++|+.|++++|.++ .+|..+..+++|+.|++++|++.+..|..+..++
T Consensus 240 l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 240 PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 567788888888777 4554 5577888888888777 5566777788888888888877766666555433
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=2.1e-23 Score=195.26 Aligned_cols=209 Identities=21% Similarity=0.195 Sum_probs=126.1
Q ss_pred CCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEc
Q 047977 334 TSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSV 413 (569)
Q Consensus 334 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 413 (569)
++|++|++++|.+....+..|.++++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.+++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 36777777777776555556667777777777777666555555666666666666666666444455555555555555
Q ss_pred cCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceee-CCccccCCCCCcEEEccCCccc
Q 047977 414 FTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGS-LPACMRNCSNLNRVRFDGNQFT 492 (569)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~ 492 (569)
++|.+.+..+ ..+..+++|++|++++|.+... +|..+.++++|++|++++|.+.
T Consensus 108 ~~n~l~~~~~-------------------------~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 108 VETNLASLEN-------------------------FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp TTSCCCCSTT-------------------------CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCCccccCc-------------------------hhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 5555543332 2344455566666666655532 3555666666666666666666
Q ss_pred cchhhhhcCCCCCc----EEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCcccCC
Q 047977 493 GNITRAFGVHPRLD----FIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGKNS 568 (569)
Q Consensus 493 ~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 568 (569)
+..+..+..+++|+ +|++++|.+.+..+..+.. .+|+.|++++|.+++..+..++.+++|++|++++|++++.-|
T Consensus 163 ~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp EECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 55555555444444 6667777666444433333 367777777777665555556667777777777777766543
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=1.2e-25 Score=214.30 Aligned_cols=249 Identities=18% Similarity=0.165 Sum_probs=141.5
Q ss_pred CCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCccee-eCCcccc-------CCCCCcEEecccccccccCCccc
Q 047977 259 NLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMG-NIPPEIG-------LLTKLQYLFLYRNHFSGPIPSEI 330 (569)
Q Consensus 259 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~l 330 (569)
..++|+.++++++.+ .++..... .++.++++++.+.. ..+..+. .+++|++|++++|.+++..|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred cCCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 344566666666655 33332111 15555666655532 2332222 35566666666666655555443
Q ss_pred --cCCCCCCEEEccCCccccccCcccccC-----CCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCcccc
Q 047977 331 --GKLTSLEKLDLSGNQLSGTIPPTLWNL-----TNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENIS 403 (569)
Q Consensus 331 --~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 403 (569)
..+++|++|++++|.+... +..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---- 190 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG---- 190 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH----
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH----
Confidence 5556666666666665543 4444444 555555555555554444455555555555555555432210
Q ss_pred CCCCCCEEEccCCcccccCCchh--hccCCCCceEEcccCcCcc--ccC-hhhhCCCCCcEEEccCCcceeeCC-ccccC
Q 047977 404 RLVNLNKFSVFTNNFSGSIPGDF--GKFSPSLINVSFSNNSFSG--ELP-YELCSGFALEELTVNGNNFTGSLP-ACMRN 477 (569)
Q Consensus 404 ~l~~L~~l~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~--~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~ 477 (569)
.+..+ ..++ +|++|++++|.+.+ .++ ..+..+++|++|++++|++++..+ ..+..
T Consensus 191 ------------------~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 191 ------------------LISALCPLKFP-TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp ------------------HHHHSCTTSCT-TCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred ------------------HHHHHHhccCC-CCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 11111 2232 56666666665542 112 223456777888888887775443 44566
Q ss_pred CCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCccee
Q 047977 478 CSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISG 541 (569)
Q Consensus 478 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 541 (569)
+++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|+.|++++|++++
T Consensus 252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 778888888888887 5565554 7888888888888755 44 7788888888888888774
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2.5e-24 Score=217.35 Aligned_cols=219 Identities=21% Similarity=0.183 Sum_probs=191.7
Q ss_pred cCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCE
Q 047977 331 GKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNK 410 (569)
Q Consensus 331 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 410 (569)
..+++|++|++++|.+....+..|..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+. ...++|+.
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-----~~~~~L~~ 103 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIET 103 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-----EECTTCCE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-----CCCCCcCE
Confidence 345589999999999998778899999999999999999986544 88999999999999998842 33489999
Q ss_pred EEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCcccc-CCCCCcEEEccCC
Q 047977 411 FSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMR-NCSNLNRVRFDGN 489 (569)
Q Consensus 411 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~ 489 (569)
|++++|.+++..+.. + ++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..|..+. .+++|++|++++|
T Consensus 104 L~L~~N~l~~~~~~~---l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 104 LHAANNNISRVSCSR---G-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp EECCSSCCCCEEECC---C-SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EECcCCcCCCCCccc---c-CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 999999998765443 3 4999999999999987787888899999999999999987777775 7999999999999
Q ss_pred ccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCc
Q 047977 490 QFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELT 564 (569)
Q Consensus 490 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 564 (569)
.+++..+ ...+++|++|++++|.+++ +|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.
T Consensus 180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 180 FIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred ccccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 9986633 4469999999999999985 45569999999999999999996 6778999999999999999998
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.4e-22 Score=188.77 Aligned_cols=203 Identities=19% Similarity=0.231 Sum_probs=126.1
Q ss_pred CCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcc
Q 047977 360 LLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFS 439 (569)
Q Consensus 360 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 439 (569)
.+.++++++.++ .++..+. +.++.|++++|.+.+..+..+..+++|+.|++++|.++...+..+..++ +|++|+++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~-~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELK-NLETLWVT 93 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCT-TCCEEECC
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCC-CCCEEECC
Confidence 445555555544 2222221 3455555555555533333455555666666665555533333333443 66666666
Q ss_pred cCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccC
Q 047977 440 NNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEI 519 (569)
Q Consensus 440 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 519 (569)
+|.+.+..+..+..+++|++|++++|.++...+..+.++++|++|++++|.+.+..+..++.+++|++|++++|.+.+..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 66665444444556677777777777776555556677777777777777777666666777777777777777777655
Q ss_pred CcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCccc
Q 047977 520 SPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGK 566 (569)
Q Consensus 520 ~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 566 (569)
+..|..+++|+.|++++|.+++..+..+..+++|++|++++||+...
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 55677777777777777777766666677777777777777777543
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=3.2e-22 Score=187.21 Aligned_cols=223 Identities=19% Similarity=0.165 Sum_probs=175.0
Q ss_pred EEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCc
Q 047977 290 SLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNN 369 (569)
Q Consensus 290 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 369 (569)
.++..+..+. .+|..+ .+++++|++++|.+++..+..+..+++|++|++++|.+....+..|..+++|++|++++|.
T Consensus 11 ~~~c~~~~l~-~ip~~l--~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCS-SCCSSS--CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCcc-ccCCCC--CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 3444444444 345444 3689999999999997776789999999999999999987777789999999999999999
Q ss_pred ccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccccc-CCchhhccCCCCceEEcccCcCccccC
Q 047977 370 LSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGS-IPGDFGKFSPSLINVSFSNNSFSGELP 448 (569)
Q Consensus 370 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~ 448 (569)
++...+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++. +|..+..++ +|+.|++++|.+.+..+
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~-~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-TCCEEECCSSCCCEECG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCC-CCCEEECCCCCCCcCCH
Confidence 9977778899999999999999999866555788899999999999988764 477777776 88888888888876555
Q ss_pred hhhhCCCCCc----EEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccc
Q 047977 449 YELCSGFALE----ELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIG 517 (569)
Q Consensus 449 ~~~~~~~~L~----~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 517 (569)
..+..+.+|+ +|++++|.+....+..+. ..+|++|++++|.+++..+..++.+++|++|++++|++..
T Consensus 167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp GGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred HHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 5555555555 788888887744444443 3478888888888776666667778888888888887763
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=4.3e-22 Score=186.85 Aligned_cols=203 Identities=19% Similarity=0.208 Sum_probs=138.3
Q ss_pred ccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCc
Q 047977 355 WNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLI 434 (569)
Q Consensus 355 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~ 434 (569)
.+++++++++++++.++ .++..+ .+.++.|++++|.+.+..+..+..+++|+.|++++|.+++..+. ..+ ++|+
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l-~~L~ 80 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTL-PVLG 80 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCC-TTCC
T ss_pred cccCCccEEECCCCCCC-cCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCC-CcCC
Confidence 34445555555555544 222222 13555555555555544444555556666666666655533222 233 3777
Q ss_pred eEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCc
Q 047977 435 NVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNH 514 (569)
Q Consensus 435 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 514 (569)
+|++++|.+. .+|..+..+++|++|++++|+++...+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 7777777776 556666777888888888888885555678888888888888888887777778888888888888888
Q ss_pred ccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCcc
Q 047977 515 FIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTG 565 (569)
Q Consensus 515 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 565 (569)
++...+..|..+++|+.|++++|+++ .+|..+..+++|+.|++++||+.-
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 87655556788888888888888888 567777778888888888888753
No 77
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1.6e-24 Score=213.30 Aligned_cols=241 Identities=16% Similarity=0.218 Sum_probs=145.2
Q ss_pred ccccCCCCCCEEEccCCccccccC----cccccCCCCCEEEcccCccc---ccCCc-------cccCCCCCCEEEccCCc
Q 047977 328 SEIGKLTSLEKLDLSGNQLSGTIP----PTLWNLTNLLSLQLFFNNLS---GTIPP-------EIGSMASLVAFDVNTNQ 393 (569)
Q Consensus 328 ~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~---~~~~~-------~~~~~~~L~~L~l~~~~ 393 (569)
..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+. +.++. .+..+++|+.|++++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 344444455555555554443221 22334455555555554221 11111 12455666666666666
Q ss_pred ccc----cCCccccCCCCCCEEEccCCcccccCCchhhccC------------CCCceEEcccCcCcc-ccC---hhhhC
Q 047977 394 LHG----ELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFS------------PSLINVSFSNNSFSG-ELP---YELCS 453 (569)
Q Consensus 394 ~~~----~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~------------~~L~~L~l~~~~~~~-~~~---~~~~~ 453 (569)
+.. .++..+..+++|+.|++++|.++...+..+.... ++|++|++++|.+.+ .++ ..+..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 554 2444556666666666666666533322222210 377777777777752 233 35556
Q ss_pred CCCCcEEEccCCccee-----eCCccccCCCCCcEEEccCCccc----cchhhhhcCCCCCcEEeCcCCccccc----CC
Q 047977 454 GFALEELTVNGNNFTG-----SLPACMRNCSNLNRVRFDGNQFT----GNITRAFGVHPRLDFIRLSGNHFIGE----IS 520 (569)
Q Consensus 454 ~~~L~~L~l~~~~~~~-----~~~~~l~~~~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~----~~ 520 (569)
+++|++|++++|.++. ..+..+..+++|++|+|++|.++ ..++..+..+++|++|++++|.+.+. ++
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 7788888888887762 22336677788888888888875 45667777888888888888887654 34
Q ss_pred cCccc--CCCCCEEECCCCccee----cCCcCc-cCCCCCCeEeCcCCcCcccCC
Q 047977 521 PDWGE--CRNLSNLQLDRNKISG----GIPAEL-GNLTRLGVLSLDSNELTGKNS 568 (569)
Q Consensus 521 ~~l~~--~~~L~~L~l~~n~~~~----~~~~~l-~~l~~L~~L~l~~n~~~~~~~ 568 (569)
..+.. +++|+.|++++|.+++ .+|..+ .++++|++|++++|++++.-|
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 45533 7888888888888876 366666 557888888888888877654
No 78
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=6.4e-24 Score=206.80 Aligned_cols=252 Identities=14% Similarity=0.130 Sum_probs=150.9
Q ss_pred EEccCCcceeeCCccccCCCCCcEEecccccccccCC----ccccCCC-CCCEEEccCCccccccCcccccC-----CCC
Q 047977 291 LQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIP----SEIGKLT-SLEKLDLSGNQLSGTIPPTLWNL-----TNL 360 (569)
Q Consensus 291 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~~L 360 (569)
..++.+.+.+.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+.+..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4566666666555555555668888888888775554 5666777 78888888888776655555554 778
Q ss_pred CEEEcccCcccccCCcc----ccCC-CCCCEEEccCCcccccCCcc----ccC-CCCCCEEEccCCcccccCCchh----
Q 047977 361 LSLQLFFNNLSGTIPPE----IGSM-ASLVAFDVNTNQLHGELPEN----ISR-LVNLNKFSVFTNNFSGSIPGDF---- 426 (569)
Q Consensus 361 ~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~~~----~~~-l~~L~~l~l~~~~~~~~~~~~~---- 426 (569)
++|++++|.++...+.. +..+ ++|++|++++|.+.+..+.. +.. .++|+.|++++|.++......+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 88888888776444332 3333 67777777777776443322 222 2577777777777664333222
Q ss_pred hccCCCCceEEcccCcCccccChhh----hCC-CCCcEEEccCCcceee----CCccccC-CCCCcEEEccCCccccchh
Q 047977 427 GKFSPSLINVSFSNNSFSGELPYEL----CSG-FALEELTVNGNNFTGS----LPACMRN-CSNLNRVRFDGNQFTGNIT 496 (569)
Q Consensus 427 ~~~~~~L~~L~l~~~~~~~~~~~~~----~~~-~~L~~L~l~~~~~~~~----~~~~l~~-~~~L~~L~l~~~~~~~~~~ 496 (569)
...+++|++|++++|.+++..+..+ ..+ ++|++|++++|.+++. ++..+.. .++|++|++++|.+.+..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 2333367777777777665444322 333 4677777777766631 2333333 3467777777776655333
Q ss_pred ----hhhcCCCCCcEEeCcCCccccc-------CCcCcccCCCCCEEECCCCcceec
Q 047977 497 ----RAFGVHPRLDFIRLSGNHFIGE-------ISPDWGECRNLSNLQLDRNKISGG 542 (569)
Q Consensus 497 ----~~l~~l~~L~~L~l~~~~~~~~-------~~~~l~~~~~L~~L~l~~n~~~~~ 542 (569)
..+..+++|++|++++|.+... ++..+..+++|+.|++++|.+...
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 2345566677777777663222 223455666666666766666644
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.9e-22 Score=188.04 Aligned_cols=228 Identities=18% Similarity=0.214 Sum_probs=162.7
Q ss_pred CCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEcc
Q 047977 311 KLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVN 390 (569)
Q Consensus 311 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 390 (569)
.+..+.+.++.+.+. ..+..+++|+.|++++|.+... ..+..+++|++|++++|.+... ..+..+++|++|+++
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence 444555555555433 2345677888888888887633 3577788888888888887642 467778888888888
Q ss_pred CCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceee
Q 047977 391 TNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGS 470 (569)
Q Consensus 391 ~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 470 (569)
+|.+.+..+..+..+++|+.|++++|.+++..+..+..++ +|++|++++|.+.+..+..+..+++|+.|++++|++++.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT-NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCC-CCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence 8888755555677788888888888887765555566665 788888888877755555566777788888888877755
Q ss_pred CCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCC
Q 047977 471 LPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNL 550 (569)
Q Consensus 471 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l 550 (569)
.+..+.++++|++|++++|.+.+..+..++.+++|++|++++|++.. .+++|+.++++.|.+++.+|..++.+
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCccccc
Confidence 55556777778888888887777666667777788888887777652 35567777777777777777777665
Q ss_pred CC
Q 047977 551 TR 552 (569)
Q Consensus 551 ~~ 552 (569)
+.
T Consensus 246 ~~ 247 (272)
T 3rfs_A 246 AP 247 (272)
T ss_dssp CG
T ss_pred CC
Confidence 54
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=1.2e-22 Score=189.34 Aligned_cols=211 Identities=19% Similarity=0.223 Sum_probs=140.3
Q ss_pred ccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCC
Q 047977 306 IGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLV 385 (569)
Q Consensus 306 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 385 (569)
...+++|+.|++++|.+.. + ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 3456677777777776653 2 3466677777777777776642 3566777777777777777655555566777777
Q ss_pred EEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCC
Q 047977 386 AFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGN 465 (569)
Q Consensus 386 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 465 (569)
+|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..++ +|+.|++++|.+.+..+..+..+++|+.|++++|
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT-NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc-cCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 777777777655555566777777777777777655554455554 7777777777776554445566777777777777
Q ss_pred cceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCC
Q 047977 466 NFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRN 528 (569)
Q Consensus 466 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~ 528 (569)
.+++..+..+..+++|++|++++|++. +.+++|+.++++.|.+.+.+|..++.++.
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred cCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 777555555677777777777777665 23556777777777777777766655443
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=4.1e-21 Score=178.82 Aligned_cols=201 Identities=27% Similarity=0.333 Sum_probs=125.2
Q ss_pred CCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEcc
Q 047977 21 NLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLC 100 (569)
Q Consensus 21 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 100 (569)
+.++++++++.++ .+|..+. +++++|++++|.+....+..|.++++|++|++++|.+..+....|..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 4667777777776 4454444 567777777777765555567777777777777777776666666667777777777
Q ss_pred cccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccCCccccC
Q 047977 101 YNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGP 180 (569)
Q Consensus 101 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 180 (569)
+|.+....+..+..+++|++|++++|.++ .++...|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+...
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 77766544555566667777777766665 33434456666666666666666644444456666666666666666554
Q ss_pred CCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCC
Q 047977 181 IPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNAL 225 (569)
Q Consensus 181 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 225 (569)
.+..+..+++|+.|++++|.+....+..+..+++|+.|++++|++
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 444455555555555555555543333455555555555555554
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=2.1e-23 Score=201.62 Aligned_cols=256 Identities=14% Similarity=0.164 Sum_probs=170.7
Q ss_pred CCCcEEEccCCcceeeCCccccCC--CCCcEEecccccccccCCccccCCCCCCEEEccCCccccc-cCcccccCCCCCE
Q 047977 286 TELESLQIQNNSFMGNIPPEIGLL--TKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGT-IPPTLWNLTNLLS 362 (569)
Q Consensus 286 ~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~ 362 (569)
..++.++++++.+. +..+..+ +.++.+++++|.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 34788888887765 2334445 7888888888888765544 55688888888888887654 5666778888888
Q ss_pred EEcccCcccccCCccccCCCCCCEEEccCC-ccccc-CCccccCCCCCCEEEccCC-ccccc-CCchhhccCCCCceEEc
Q 047977 363 LQLFFNNLSGTIPPEIGSMASLVAFDVNTN-QLHGE-LPENISRLVNLNKFSVFTN-NFSGS-IPGDFGKFSPSLINVSF 438 (569)
Q Consensus 363 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~l~l~~~-~~~~~-~~~~~~~~~~~L~~L~l 438 (569)
|++++|.++...+..+..+++|++|++++| .+.+. ++..+..+++|+.|++++| .+++. ++..+..++++|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 888888877656666777888888888888 55542 4455667778888888887 66643 33334444337777777
Q ss_pred ccC--cCc-cccChhhhCCCCCcEEEccCCc-ceeeCCccccCCCCCcEEEccCCc-cccchhhhhcCCCCCcEEeCcCC
Q 047977 439 SNN--SFS-GELPYELCSGFALEELTVNGNN-FTGSLPACMRNCSNLNRVRFDGNQ-FTGNITRAFGVHPRLDFIRLSGN 513 (569)
Q Consensus 439 ~~~--~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~ 513 (569)
++| .++ +.++..+..+++|+.|++++|. +++..+..+..+++|++|++++|. +.......++.+++|++|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 777 343 2345555667777777777777 554555667777777777777774 33222335667777777777777
Q ss_pred cccccCCcCcccC-CCCCEEECCCCcceecCCcCccC
Q 047977 514 HFIGEISPDWGEC-RNLSNLQLDRNKISGGIPAELGN 549 (569)
Q Consensus 514 ~~~~~~~~~l~~~-~~L~~L~l~~n~~~~~~~~~l~~ 549 (569)
+.. ..+..+ .+++.|++++|.+++..|..+..
T Consensus 283 -i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 283 -VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp -SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred -cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence 321 233333 23556667777777766665543
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=1.3e-22 Score=196.07 Aligned_cols=254 Identities=14% Similarity=0.174 Sum_probs=130.3
Q ss_pred CCEEeCcCCcCccccCccccCCC--CCCcEEEccCCcceeeCCccccCCCCCcEEeccccccccc-CCccccCCCCCCEE
Q 047977 263 LNELGLSDNFLSGEISANLIGNW--TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGP-IPSEIGKLTSLEKL 339 (569)
Q Consensus 263 L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L 339 (569)
++.++++++.+.. ..+..+ +.++.++++++.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|
T Consensus 49 ~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred heeeccccccCCH----HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 5556665554431 112333 5566666666655543333 33456666666666655433 44455556666666
Q ss_pred EccCCccccccCcccccCCCCCEEEcccC-ccccc-CCccccCCCCCCEEEccCC-ccccc-CCccccCCC-CCCEEEcc
Q 047977 340 DLSGNQLSGTIPPTLWNLTNLLSLQLFFN-NLSGT-IPPEIGSMASLVAFDVNTN-QLHGE-LPENISRLV-NLNKFSVF 414 (569)
Q Consensus 340 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~l~-~L~~l~l~ 414 (569)
++++|.+.+..+..+..+++|++|++++| .++.. ++..+..+++|++|++++| .+.+. ++..+..++ +|+.|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 66666655445555555666666666666 34321 2333455566666666666 55432 334455556 66666666
Q ss_pred CC--ccc-ccCCchhhccCCCCceEEcccCc-CccccChhhhCCCCCcEEEccCCc-ceeeCCccccCCCCCcEEEccCC
Q 047977 415 TN--NFS-GSIPGDFGKFSPSLINVSFSNNS-FSGELPYELCSGFALEELTVNGNN-FTGSLPACMRNCSNLNRVRFDGN 489 (569)
Q Consensus 415 ~~--~~~-~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~ 489 (569)
+| .++ +.++..+..++ +|+.|++++|. +++..+..+..+++|+.|++++|. +.......+.++++|++|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCP-NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCT-TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCcccCCHHHHHHHHhhCC-CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 66 233 22333334443 66666666665 444445555556666666666663 22222224555666666666666
Q ss_pred ccccchhhhhcCCCCCcEEeCcCCcccccCCcCccc
Q 047977 490 QFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGE 525 (569)
Q Consensus 490 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 525 (569)
+.......+. ..++.|++++|.+++..|..++.
T Consensus 283 -i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 283 -VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp -SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred -cCHHHHHHHH--hhCcceEEecccCccccCCcccc
Confidence 3321111121 12334445666665555554443
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=4.6e-21 Score=176.40 Aligned_cols=179 Identities=16% Similarity=0.228 Sum_probs=114.4
Q ss_pred CCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEcc
Q 047977 384 LVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVN 463 (569)
Q Consensus 384 L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 463 (569)
.+.++++++.+. .+|..+. +.++.|++++|.+++..+..+..++ +|++|++++|.+.+..+..+..+++|++|+++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLT-KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcc-cCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 344444444444 3333332 3555555555555544444454444 66666666666655445555666677777777
Q ss_pred CCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecC
Q 047977 464 GNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGI 543 (569)
Q Consensus 464 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 543 (569)
+|+++...+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+.+..+..|+.+++|+.|++++|++++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 77776544556677777777777777777666666677777777777777777555556777777777777777777666
Q ss_pred CcCccCCCCCCeEeCcCCcCccc
Q 047977 544 PAELGNLTRLGVLSLDSNELTGK 566 (569)
Q Consensus 544 ~~~l~~l~~L~~L~l~~n~~~~~ 566 (569)
+..+..+++|++|++++|++.+.
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCC
Confidence 66677777777777777777654
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=1.1e-20 Score=177.37 Aligned_cols=205 Identities=22% Similarity=0.247 Sum_probs=165.0
Q ss_pred cCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCC
Q 047977 14 PAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPS 93 (569)
Q Consensus 14 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 93 (569)
..+.+++++++++++++.++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.+..... ...+++
T Consensus 4 C~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~ 78 (290)
T 1p9a_G 4 CEVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPV 78 (290)
T ss_dssp SEEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTT
T ss_pred ccccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCc
Confidence 34778899999999999998 5565554 689999999999987777889999999999999998876543 367889
Q ss_pred CcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEcc
Q 047977 94 LTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLA 173 (569)
Q Consensus 94 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 173 (569)
|++|++++|.+. .+|..+..+++|++|++++|.++ .++...|.++++|++|++++|++.+..+..+..+++|+.|+++
T Consensus 79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 156 (290)
T 1p9a_G 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156 (290)
T ss_dssp CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC
Confidence 999999999888 67777888889999999999887 4555556888889999998888886666667788888888888
Q ss_pred CCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCC
Q 047977 174 TNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALN 226 (569)
Q Consensus 174 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 226 (569)
+|.+....+..+..+++|+.|++++|.+. .+|..+...++|+.+++++|++.
T Consensus 157 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 157 NNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 88887666666677888888888888777 56666666777778887777654
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=3.5e-22 Score=190.16 Aligned_cols=202 Identities=16% Similarity=0.165 Sum_probs=134.2
Q ss_pred CCCCEEEcccCcccccCCccc--cCCCCCCEEEccCCcccccCC----ccccCCCCCCEEEccCCcccccCCchhhccCC
Q 047977 358 TNLLSLQLFFNNLSGTIPPEI--GSMASLVAFDVNTNQLHGELP----ENISRLVNLNKFSVFTNNFSGSIPGDFGKFSP 431 (569)
Q Consensus 358 ~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~ 431 (569)
++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+..+..+..++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~- 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP- 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT-
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC-
Confidence 445555555555544444443 445555555555555543222 1223466666666666666655555555554
Q ss_pred CCceEEcccCcCccc--c--ChhhhCCCCCcEEEccCCcceeeCCc----cccCCCCCcEEEccCCccccchhhhhcCC-
Q 047977 432 SLINVSFSNNSFSGE--L--PYELCSGFALEELTVNGNNFTGSLPA----CMRNCSNLNRVRFDGNQFTGNITRAFGVH- 502 (569)
Q Consensus 432 ~L~~L~l~~~~~~~~--~--~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~l~~l- 502 (569)
+|++|++++|++.+. + +..+..+++|++|++++|+++ ..+. .+.++++|++|++++|.+.+..|..++.+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 777777777765432 1 112346778888888888876 3332 24677889999999998887767666666
Q ss_pred --CCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCccc
Q 047977 503 --PRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGK 566 (569)
Q Consensus 503 --~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 566 (569)
++|++|++++|.++ .+|..+. ++|+.|++++|++++. |. +..+++|++|++++|+|+++
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSCC
T ss_pred CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCCC
Confidence 69999999999988 5677664 7899999999999853 43 67889999999999999864
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=6.2e-23 Score=199.80 Aligned_cols=256 Identities=18% Similarity=0.183 Sum_probs=185.7
Q ss_pred EeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCC----ccccCCC-CCcEEecccccccccCCccccCC-----CC
Q 047977 266 LGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIP----PEIGLLT-KLQYLFLYRNHFSGPIPSEIGKL-----TS 335 (569)
Q Consensus 266 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~-----~~ 335 (569)
+.++.+.+.+.++. +....++|+.|++++|.+.+..+ .++..++ +|++|++++|.+++..+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEE-FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHH-HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHH-HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46677777754443 35555669999999999876554 5677777 89999999999887666555553 89
Q ss_pred CCEEEccCCccccccCccc----ccC-CCCCEEEcccCcccccCCccc----cC-CCCCCEEEccCCcccccC----Ccc
Q 047977 336 LEKLDLSGNQLSGTIPPTL----WNL-TNLLSLQLFFNNLSGTIPPEI----GS-MASLVAFDVNTNQLHGEL----PEN 401 (569)
Q Consensus 336 L~~L~l~~~~~~~~~~~~~----~~~-~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~~----~~~ 401 (569)
|++|++++|.+.+..+..+ ..+ ++|++|++++|.++......+ .. +++|++|++++|.+.+.. +..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999999886655543 344 899999999999875544333 33 468999999999887532 334
Q ss_pred ccCCC-CCCEEEccCCcccccCCchhhc----cCCCCceEEcccCcCccc----cChhhhC-CCCCcEEEccCCcceeeC
Q 047977 402 ISRLV-NLNKFSVFTNNFSGSIPGDFGK----FSPSLINVSFSNNSFSGE----LPYELCS-GFALEELTVNGNNFTGSL 471 (569)
Q Consensus 402 ~~~l~-~L~~l~l~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~----~~~~~~~-~~~L~~L~l~~~~~~~~~ 471 (569)
+...+ +|+.|++++|.+++..+..+.. .+++|+.|++++|.+.+. ++..+.. .++|++|++++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 45555 8999999999988766554433 324899999999998753 3444544 458999999999887533
Q ss_pred C----ccccCCCCCcEEEccCCcccc-------chhhhhcCCCCCcEEeCcCCcccccCCcC
Q 047977 472 P----ACMRNCSNLNRVRFDGNQFTG-------NITRAFGVHPRLDFIRLSGNHFIGEISPD 522 (569)
Q Consensus 472 ~----~~l~~~~~L~~L~l~~~~~~~-------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 522 (569)
+ ..+..+++|++|++++|.+.. .++..+..+++|++||+++|++....+..
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~ 303 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP 303 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHH
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHH
Confidence 3 345778899999999998433 23445778889999999999987654443
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1e-20 Score=179.33 Aligned_cols=208 Identities=17% Similarity=0.270 Sum_probs=157.6
Q ss_pred EecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcc
Q 047977 315 LFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQL 394 (569)
Q Consensus 315 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 394 (569)
+.+..+.+.+. .....+++|++|++++|.+... + .+..+++|++|++++|.+.... . +..+++|+.|++++|.+
T Consensus 24 ~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~~n~l 97 (308)
T 1h6u_A 24 IAAGKSNVTDT--VTQADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLA-P-LKNLTKITELELSGNPL 97 (308)
T ss_dssp HHTTCSSTTSE--ECHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECCSCCC
T ss_pred HHhCCCCcCce--ecHHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEccCCcC
Confidence 34444444432 2345678899999999988743 3 5888999999999999887433 3 88889999999999988
Q ss_pred cccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCcc
Q 047977 395 HGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPAC 474 (569)
Q Consensus 395 ~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 474 (569)
.+ + ..+..+++|+.|++++|.+++. + .+..++ +|+.|++++|.+.+..+ +..+++|+.|++++|.+++ .+.
T Consensus 98 ~~-~-~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~-~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~- 168 (308)
T 1h6u_A 98 KN-V-SAIAGLQSIKTLDLTSTQITDV-T-PLAGLS-NLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP- 168 (308)
T ss_dssp SC-C-GGGTTCTTCCEEECTTSCCCCC-G-GGTTCT-TCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-
T ss_pred CC-c-hhhcCCCCCCEEECCCCCCCCc-h-hhcCCC-CCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-
Confidence 74 3 3678888999999999988753 2 355555 88888888888874332 7778888888888888874 333
Q ss_pred ccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCccee
Q 047977 475 MRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISG 541 (569)
Q Consensus 475 l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 541 (569)
+..+++|++|++++|.+.+..+ +..+++|++|++++|++.+.. .+..+++|+.|++++|++++
T Consensus 169 l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 7888888888888888875544 778888888888888887553 37888888888888888874
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=1.7e-22 Score=198.86 Aligned_cols=241 Identities=20% Similarity=0.207 Sum_probs=130.7
Q ss_pred cCCCCCCcEEEccCCcceeeCC----ccccCCCCCcEEeccccccc---ccCCccc-------cCCCCCCEEEccCCccc
Q 047977 282 IGNWTELESLQIQNNSFMGNIP----PEIGLLTKLQYLFLYRNHFS---GPIPSEI-------GKLTSLEKLDLSGNQLS 347 (569)
Q Consensus 282 ~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~---~~~~~~l-------~~~~~L~~L~l~~~~~~ 347 (569)
+..+++|+.|++++|.+....+ ..+..+++|+.|++++|.+. +.+|..+ ..+++|++|++++|.+.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 3445556666666665543322 22445556666666554322 2222222 34455555555555554
Q ss_pred c----ccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCC---------CCCCEEEcc
Q 047977 348 G----TIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRL---------VNLNKFSVF 414 (569)
Q Consensus 348 ~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l---------~~L~~l~l~ 414 (569)
. .++..+..+++|++|++++|.++...+..+ +..+..+ ++|+.|+++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l--------------------~~~l~~l~~~~~~~~~~~L~~L~L~ 167 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI--------------------ARALQELAVNKKAKNAPPLRSIICG 167 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHH--------------------HHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHH--------------------HHHHHHHhhhhhcccCCCCcEEECC
Confidence 3 123334444555555555554432111111 1112222 566666666
Q ss_pred CCcccc-cCC---chhhccCCCCceEEcccCcCccc-----cChhhhCCCCCcEEEccCCcce----eeCCccccCCCCC
Q 047977 415 TNNFSG-SIP---GDFGKFSPSLINVSFSNNSFSGE-----LPYELCSGFALEELTVNGNNFT----GSLPACMRNCSNL 481 (569)
Q Consensus 415 ~~~~~~-~~~---~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L 481 (569)
+|.++. .++ ..+..++ +|++|++++|.+.+. .+..+..+++|+.|++++|.++ ..++..+..+++|
T Consensus 168 ~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L 246 (386)
T 2ca6_A 168 RNRLENGSMKEWAKTFQSHR-LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 246 (386)
T ss_dssp SSCCTGGGHHHHHHHHHHCT-TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred CCCCCcHHHHHHHHHHHhCC-CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc
Confidence 665542 222 2333444 677777777666521 2225556677777777777764 3455666777777
Q ss_pred cEEEccCCccccc----hhhhhc--CCCCCcEEeCcCCcccc----cCCcCc-ccCCCCCEEECCCCcceecC
Q 047977 482 NRVRFDGNQFTGN----ITRAFG--VHPRLDFIRLSGNHFIG----EISPDW-GECRNLSNLQLDRNKISGGI 543 (569)
Q Consensus 482 ~~L~l~~~~~~~~----~~~~l~--~l~~L~~L~l~~~~~~~----~~~~~l-~~~~~L~~L~l~~n~~~~~~ 543 (569)
++|++++|.+.+. ++..+. .+++|++|++++|.+.+ .+|..+ ..+++|+.|++++|.+++..
T Consensus 247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 7777777777654 345553 37777777777777775 355555 55677777777777777544
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=1.1e-20 Score=172.50 Aligned_cols=197 Identities=18% Similarity=0.236 Sum_probs=128.2
Q ss_pred CCCEEEccCCccccccCcccccCCCCCEEEcccCc-ccccCCccccCCCCCCEEEccC-CcccccCCccccCCCCCCEEE
Q 047977 335 SLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNN-LSGTIPPEIGSMASLVAFDVNT-NQLHGELPENISRLVNLNKFS 412 (569)
Q Consensus 335 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~l~ 412 (569)
+|++|++++|.+....+..|..+++|++|++++|. ++...+..|..+++|+.|++++ |.+....+..+..+++|+.++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67777777777765555566667777777777775 5544445566666666666665 555533334455555555555
Q ss_pred ccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCc---EEEccCC-cceeeCCccccCCCCCc-EEEcc
Q 047977 413 VFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALE---ELTVNGN-NFTGSLPACMRNCSNLN-RVRFD 487 (569)
Q Consensus 413 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~l~~~~~L~-~L~l~ 487 (569)
+++|.+++ +|. +..+++|+ +|++++| .++...+..|.++++|+ +|+++
T Consensus 112 l~~n~l~~--------------------------lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 112 IFNTGLKM--------------------------FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164 (239)
T ss_dssp EEEECCCS--------------------------CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC
T ss_pred CCCCCCcc--------------------------ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcC
Confidence 55554432 332 44455555 7777777 77755556677788888 88888
Q ss_pred CCccccchhhhhcCCCCCcEEeCcCCc-ccccCCcCcccC-CCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCc
Q 047977 488 GNQFTGNITRAFGVHPRLDFIRLSGNH-FIGEISPDWGEC-RNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNE 562 (569)
Q Consensus 488 ~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~~-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 562 (569)
+|.+....+..+.. ++|++|++++|+ +....+..|+.+ ++|+.|++++|++++ .|.. .+++|+.|+++++.
T Consensus 165 ~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 165 NNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp SCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred CCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence 88887444444544 788888888884 776656667887 888888888888874 3332 56778888887763
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=3.5e-20 Score=169.24 Aligned_cols=203 Identities=16% Similarity=0.209 Sum_probs=140.5
Q ss_pred eCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCc-cccccCcccccCCCCCEEEccc-CcccccCCccc
Q 047977 301 NIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQ-LSGTIPPTLWNLTNLLSLQLFF-NNLSGTIPPEI 378 (569)
Q Consensus 301 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~ 378 (569)
.+|. + .++++.|++++|.+++..+..|..+++|++|++++|. +....+..|..+++|++|++++ |.++...+..|
T Consensus 25 ~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 25 RIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp SCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 4555 3 4589999999999997776789999999999999997 8867777899999999999999 99987777889
Q ss_pred cCCCCCCEEEccCCcccccCCccccCCCCCC---EEEccCC-cccccCCchhhccCCCCceEEcccCcCccccChhhhCC
Q 047977 379 GSMASLVAFDVNTNQLHGELPENISRLVNLN---KFSVFTN-NFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSG 454 (569)
Q Consensus 379 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~---~l~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 454 (569)
..+++|+.|++++|.+.+ +|. +..+++|+ .+++++| .+++..+. .+..+
T Consensus 102 ~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~-------------------------~~~~l 154 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVN-------------------------AFQGL 154 (239)
T ss_dssp ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTT-------------------------TTTTT
T ss_pred CCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcc-------------------------cccch
Confidence 999999999999999884 554 66666665 6666665 44433333 34444
Q ss_pred CCCc-EEEccCCcceeeCCccccCCCCCcEEEccCCc-cccchhhhhcCC-CCCcEEeCcCCcccccCCcCcccCCCCCE
Q 047977 455 FALE-ELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQ-FTGNITRAFGVH-PRLDFIRLSGNHFIGEISPDWGECRNLSN 531 (569)
Q Consensus 455 ~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 531 (569)
++|+ .|++++|+++...+..+.. ++|++|++++|+ +....+..|+.+ ++|++|++++|+++.. |.. .+++|+.
T Consensus 155 ~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~ 230 (239)
T 2xwt_C 155 CNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKE 230 (239)
T ss_dssp BSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSE
T ss_pred hcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCce
Confidence 5555 5555555555222223333 566666666663 555555556666 6666666666666532 322 4556666
Q ss_pred EECCCC
Q 047977 532 LQLDRN 537 (569)
Q Consensus 532 L~l~~n 537 (569)
|+++++
T Consensus 231 L~l~~~ 236 (239)
T 2xwt_C 231 LIARNT 236 (239)
T ss_dssp EECTTC
T ss_pred eeccCc
Confidence 666554
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=1.1e-19 Score=172.19 Aligned_cols=193 Identities=27% Similarity=0.357 Sum_probs=118.6
Q ss_pred ccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCc
Q 047977 16 IGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLT 95 (569)
Q Consensus 16 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 95 (569)
+.++++|++|+++++.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+... ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 4466777777777777763 33 56777777777777777764433 77777777777777776654 2566777777
Q ss_pred EEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccCC
Q 047977 96 HLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATN 175 (569)
Q Consensus 96 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 175 (569)
+|++++|.+.+ .+ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+.+. +. +..+++|+.|++++|
T Consensus 111 ~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~-~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 111 TLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNI-SP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDN 183 (308)
T ss_dssp EEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCC-GG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSS
T ss_pred EEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcC-cc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCC
Confidence 77777777763 33 266677777777777776632 32 46667777777777666532 22 556666666666666
Q ss_pred ccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCC
Q 047977 176 KFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNAL 225 (569)
Q Consensus 176 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 225 (569)
.+.... .+..+++|+.|++++|.+.+.. .+..+++|++|++++|++
T Consensus 184 ~l~~~~--~l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 184 KISDIS--PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CCCCCG--GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEE
T ss_pred ccCcCh--hhcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCee
Confidence 654322 1444555555555555544322 244445555555555444
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=3.4e-19 Score=163.83 Aligned_cols=180 Identities=27% Similarity=0.346 Sum_probs=138.4
Q ss_pred CCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEc
Q 047977 20 SNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSL 99 (569)
Q Consensus 20 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 99 (569)
...++++++++.+. .+|..+. +++++|++++|.+.+..+..+.++++|++|++++|.+....+..|..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 35677888888777 4555555 57888888888887766777788888888888888887777777788888888888
Q ss_pred ccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccCCcccc
Q 047977 100 CYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSG 179 (569)
Q Consensus 100 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 179 (569)
++|.+....+..+..+++|++|++++|.++ .++...|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 888887666667778888888888888877 4555556778888888888888876655567788888888888888877
Q ss_pred CCCcCcCCCCCCcEEEcccCccee
Q 047977 180 PIPGDIGLMSNIQLVELFNNSFTG 203 (569)
Q Consensus 180 ~~~~~l~~~~~L~~L~l~~~~~~~ 203 (569)
..+..+..+++|+.|++++|.+..
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeC
Confidence 666677788888888888887753
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=7.9e-20 Score=173.85 Aligned_cols=226 Identities=19% Similarity=0.129 Sum_probs=163.8
Q ss_pred CCCCEEeCCCCcCcccCCc---cccCCCCCcEEEccCCccccCcchhc--cCCCCCCEEECCCCCCCCCCC----ccCCC
Q 047977 20 SNLTFLDLNNNLFEGSIPS---EMGDLSELQYLSVYNNSLNGAFPFQL--SNLRKVRYLDLGGNFLETPDW----SKFSN 90 (569)
Q Consensus 20 ~~L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~----~~~~~ 90 (569)
..++.+.+.++.+...... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+..... ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4577788877766421111 11234668888888888887777776 788888888888888775432 33456
Q ss_pred CCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccC--C-chhhhhcCCCCcEEeccCCcccccCCc----CCCC
Q 047977 91 MPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGL--I-PERLFTNLGKLEYLNLTDNQFQGKLSP----NVSK 163 (569)
Q Consensus 91 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~-~~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~ 163 (569)
+++|++|++++|.+....+..+..+++|++|++++|.+.+. + +...+..+++|++|++++|.++.. +. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-TGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-HHHHHHHHhc
Confidence 88888888888888877777888888888898888876532 1 112235678888888888887521 11 2456
Q ss_pred CCCCCEEEccCCccccCCCcCcCCC---CCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCC
Q 047977 164 LSNLTVLRLATNKFSGPIPGDIGLM---SNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLS 240 (569)
Q Consensus 164 ~~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 240 (569)
+++|++|++++|.+....+..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|++... + .+..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~-~~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-P-QPDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-C-CTTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-c-hhhhCCCcc
Confidence 7888889998888877666666655 68889999888888 5566553 7899999999988754 2 267788899
Q ss_pred EEEccccccee
Q 047977 241 FLALAMNQLSG 251 (569)
Q Consensus 241 ~l~l~~~~~~~ 251 (569)
.+++++|.+++
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 99999888764
No 95
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=1.7e-18 Score=155.34 Aligned_cols=155 Identities=16% Similarity=0.179 Sum_probs=127.2
Q ss_pred CEEEccCCcccccCCchhhccCCCCceEEcccCcCccccC-hhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEcc
Q 047977 409 NKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELP-YELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFD 487 (569)
Q Consensus 409 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 487 (569)
+.++++++.++ .+|..+ ++.++.|++++|.+.+..+ ..+..+++|+.|++++|+++...+..|.++++|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 46677777665 345433 2367788888888875534 346778899999999999887767788999999999999
Q ss_pred CCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCcccC
Q 047977 488 GNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGKN 567 (569)
Q Consensus 488 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 567 (569)
+|.+++..+..|+.+++|++|++++|.+.+..|..|..+++|+.|++++|.+++..|..+..+++|++|++++|++.+.-
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 99998888888999999999999999998888888999999999999999999888889999999999999999987653
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=2.1e-18 Score=166.91 Aligned_cols=238 Identities=16% Similarity=0.081 Sum_probs=115.7
Q ss_pred EEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCC-ccccCCCCCCE-EEcc
Q 047977 265 ELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIP-SEIGKLTSLEK-LDLS 342 (569)
Q Consensus 265 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~-L~l~ 342 (569)
.++.+++.++ ++|... .++++.|++++|.+....+.+|.++++|++|++++|++.+.++ ..|.+++++.+ +.+.
T Consensus 13 ~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred EEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 3444444444 444321 2456666666666664444456666666666666666543322 34555665554 3344
Q ss_pred CCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCC-cccccCCccccCCC-CCCEEEccCCcccc
Q 047977 343 GNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTN-QLHGELPENISRLV-NLNKFSVFTNNFSG 420 (569)
Q Consensus 343 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~-~L~~l~l~~~~~~~ 420 (569)
+|.+....+..|..+++|+++++++|.+.......+.....+..+++.++ .+....+..+..+. .++.+++++|+++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 45565555556666666666666666665444444444455555555443 33322222333332 35555555555553
Q ss_pred cCCchhhccCCCCceEEcccCcCccccCh-hhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhh
Q 047977 421 SIPGDFGKFSPSLINVSFSNNSFSGELPY-ELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAF 499 (569)
Q Consensus 421 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l 499 (569)
. +....... +++.+++.++.....+|. .+..+++|+.|++++|+++ .+|. ..+.+|+.|++.++.-...+| .+
T Consensus 169 i-~~~~f~~~-~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~--~~~~~L~~L~~l~~~~l~~lP-~l 242 (350)
T 4ay9_X 169 I-HNSAFNGT-QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS--YGLENLKKLRARSTYNLKKLP-TL 242 (350)
T ss_dssp E-CTTSSTTE-EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCS--SSCTTCCEEECTTCTTCCCCC-CT
T ss_pred C-Chhhcccc-chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccCh--hhhccchHhhhccCCCcCcCC-Cc
Confidence 2 22222222 455555554322223332 3344555555555555555 3332 123344444444433322333 24
Q ss_pred cCCCCCcEEeCcC
Q 047977 500 GVHPRLDFIRLSG 512 (569)
Q Consensus 500 ~~l~~L~~L~l~~ 512 (569)
..+++|+.+++.+
T Consensus 243 ~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 243 EKLVALMEASLTY 255 (350)
T ss_dssp TTCCSCCEEECSC
T ss_pred hhCcChhhCcCCC
Confidence 4555555555543
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=1e-18 Score=155.74 Aligned_cols=181 Identities=21% Similarity=0.253 Sum_probs=138.2
Q ss_pred CEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEccc
Q 047977 361 LSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSN 440 (569)
Q Consensus 361 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 440 (569)
+.++++++.++ .++..+ .+++++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..++ +|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT-SLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCC-CcCEEECCC
Confidence 56777777766 333332 45889999999988855555677888899999998888855555556665 888888888
Q ss_pred CcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCC
Q 047977 441 NSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEIS 520 (569)
Q Consensus 441 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 520 (569)
|.+.+..+..+..+++|++|++++|+++...+..+.++++|++|++++|.+++..+..+..+++|++|++++|++.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---- 161 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---- 161 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee----
Confidence 8887555555677888888888888888555556788888888888888888766767888888888888888765
Q ss_pred cCcccCCCCCEEECCCCcceecCCcCccCCCC
Q 047977 521 PDWGECRNLSNLQLDRNKISGGIPAELGNLTR 552 (569)
Q Consensus 521 ~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~ 552 (569)
..++.|+.|+++.|++++.+|..++.++.
T Consensus 162 ---~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 ---CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ---CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ---cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 34567888888888888888888777765
No 98
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=3.3e-18 Score=153.41 Aligned_cols=153 Identities=17% Similarity=0.216 Sum_probs=118.4
Q ss_pred CEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccC
Q 047977 409 NKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDG 488 (569)
Q Consensus 409 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 488 (569)
+.++.+++.++ .+|..+. +.++.|++++|.+.+..+..+..+++|+.|++++|.++...+..|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 34555555555 3344332 3777888888877755555677778888888888888877778888888888888888
Q ss_pred CccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCcc
Q 047977 489 NQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTG 565 (569)
Q Consensus 489 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 565 (569)
|.++...+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+..+..+++|++|++++|++..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 88887666777888888888888888887777788888888888888888887777778888888888888888754
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=2e-18 Score=153.93 Aligned_cols=189 Identities=15% Similarity=0.178 Sum_probs=132.2
Q ss_pred CEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCC
Q 047977 337 EKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTN 416 (569)
Q Consensus 337 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~ 416 (569)
+.++.+++.++ .++..+ .+++++|++++|.++......+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 45666666655 233222 357888888888877555556777888888888888777544455677888888888888
Q ss_pred cccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchh
Q 047977 417 NFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNIT 496 (569)
Q Consensus 417 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 496 (569)
.+++..+..+..++ +|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.
T Consensus 87 ~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---- 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLT-QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---- 161 (208)
T ss_dssp CCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred cCCccCHhHhcCcc-CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee----
Confidence 87755555555665 8888888888877555555677788888888888887555555777888888888888665
Q ss_pred hhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcce
Q 047977 497 RAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKIS 540 (569)
Q Consensus 497 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 540 (569)
+.+++|++|+++.|.+++.+|..++.++. ++..|...
T Consensus 162 ---~~~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~ 198 (208)
T 2o6s_A 162 ---CTCPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCSGS 198 (208)
T ss_dssp ---CCTTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTT
T ss_pred ---cCCCCHHHHHHHHHhCCceeeccCccccC----CccccccC
Confidence 34667888888888888777777776554 34444443
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=6.7e-18 Score=163.33 Aligned_cols=240 Identities=15% Similarity=0.130 Sum_probs=175.0
Q ss_pred cEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCcccccc-CcccccCCCCCE-EEcc
Q 047977 289 ESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTI-PPTLWNLTNLLS-LQLF 366 (569)
Q Consensus 289 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~-L~l~ 366 (569)
++++.+++.++ .+|..+ ++++++|++++|+++...+..|.++++|++|++++|.+.+.+ ...|.+++++.+ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56777877777 566554 468999999999998665567899999999999999886544 456788888776 4556
Q ss_pred cCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccC-CcccccCCchhhccCCCCceEEcccCcCcc
Q 047977 367 FNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFT-NNFSGSIPGDFGKFSPSLINVSFSNNSFSG 445 (569)
Q Consensus 367 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 445 (569)
+|+++...+..|..+++|+.+++++|.+....+..+....++..+++.+ +.+....+..+......++.|++++|++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~- 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence 6888877778888999999999999988755444555666777787765 45554444556666557888888888887
Q ss_pred ccChhhhCCCCCcEEEccC-CcceeeCC-ccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCc
Q 047977 446 ELPYELCSGFALEELTVNG-NNFTGSLP-ACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDW 523 (569)
Q Consensus 446 ~~~~~~~~~~~L~~L~l~~-~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l 523 (569)
.++.......+|++|++.+ |.++ .+| ..|+++++|++||+++|.++...+. .+.+|+.|.+.++.-...+| .+
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~---~~~~L~~L~~l~~~~l~~lP-~l 242 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSY---GLENLKKLRARSTYNLKKLP-TL 242 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSS---SCTTCCEEECTTCTTCCCCC-CT
T ss_pred CCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChh---hhccchHhhhccCCCcCcCC-Cc
Confidence 5565666667888888875 5565 444 5678888888888888888854443 35566666666665444555 47
Q ss_pred ccCCCCCEEECCCC
Q 047977 524 GECRNLSNLQLDRN 537 (569)
Q Consensus 524 ~~~~~L~~L~l~~n 537 (569)
..+++|+.+++.++
T Consensus 243 ~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 243 EKLVALMEASLTYP 256 (350)
T ss_dssp TTCCSCCEEECSCH
T ss_pred hhCcChhhCcCCCC
Confidence 78888888888764
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=3.6e-18 Score=173.48 Aligned_cols=187 Identities=26% Similarity=0.347 Sum_probs=121.2
Q ss_pred CCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEcc
Q 047977 335 SLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVF 414 (569)
Q Consensus 335 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 414 (569)
+++.|++++|.+.. ++..+ +++|+.|++++|.++ .++ ..+++|+.|++++|.+.+ +|. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 77888888887764 44433 267888888888776 344 345777777777777774 555 433 77777777
Q ss_pred CCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccc
Q 047977 415 TNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGN 494 (569)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 494 (569)
+|.+++ +|. . .++|+.|++++|.+++ +|. .+++|+.|++++|.+++ +|. +. ++|+.|++++|.++ .
T Consensus 129 ~N~l~~-lp~---~-l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 129 NNQLTM-LPE---L-PALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp SSCCSC-CCC---C-CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCcCCC-CCC---c-CccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 777765 444 2 2377777777777763 443 45677777777777763 555 44 67777777777776 3
Q ss_pred hhhhhcCCCCC-------cEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCC
Q 047977 495 ITRAFGVHPRL-------DFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNL 550 (569)
Q Consensus 495 ~~~~l~~l~~L-------~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l 550 (569)
+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|++++..|..+..+
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 443 332 55 77777777766 456666667777777777777776666665554
No 102
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.76 E-value=6.1e-17 Score=159.29 Aligned_cols=335 Identities=12% Similarity=0.021 Sum_probs=175.3
Q ss_pred CcccCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCcc
Q 047977 8 ISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSK 87 (569)
Q Consensus 8 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 87 (569)
++.+...||..|++|+.+.+..+ ++.+...+|.+|++|+.+++.++ ++.....+|.++..|+.+.+..+ +..+...+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 44455556666666666666532 44455555666666666665433 33233444555555555544322 33333334
Q ss_pred CCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCC
Q 047977 88 FSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNL 167 (569)
Q Consensus 88 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 167 (569)
|.++..++....... . .+...+|.++++|+.+.+..+. ......+|..+.+|
T Consensus 136 F~~~~~~~~~~~~~~--~-------------------------~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L 187 (394)
T 4fs7_A 136 FKGCDFKEITIPEGV--T-------------------------VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKL 187 (394)
T ss_dssp TTTCCCSEEECCTTC--C-------------------------EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTC
T ss_pred eecccccccccCccc--c-------------------------ccchhhhcccCCCcEEecCCcc-ceeccccccCCCCc
Confidence 444332221111111 1 1222334444445544443322 11233344444555
Q ss_pred CEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccc
Q 047977 168 TVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMN 247 (569)
Q Consensus 168 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 247 (569)
+.+.+..+ +.......+..+..|+.+.+...... +.........|+.+.+... +......++..+..++.+.+..+
T Consensus 188 ~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 188 KSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN 263 (394)
T ss_dssp CBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT
T ss_pred eEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCC
Confidence 55544432 22233344445555555444433221 1122233445666665432 23344455666666666666554
Q ss_pred cceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCC
Q 047977 248 QLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIP 327 (569)
Q Consensus 248 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 327 (569)
... .....+..+..++.+...... ++...+..+.+|+.+.+.++ +......+|.++.+|+.+.+.++ ++....
T Consensus 264 ~~~-i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~ 336 (394)
T 4fs7_A 264 KLR-IGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGK 336 (394)
T ss_dssp TCE-ECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT
T ss_pred cce-eeccccccccccceeccCcee----eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhH
Confidence 332 444556666667666655432 33344667777787777654 44445566777788888887653 444555
Q ss_pred ccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEE
Q 047977 328 SEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAF 387 (569)
Q Consensus 328 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 387 (569)
.+|.+|.+|+.+.+..+ +......+|.+|++|+.+++..+- . .....|.+|++|+.+
T Consensus 337 ~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 337 RSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEEE
T ss_pred HhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcEE
Confidence 67788888888888665 555666778888888888886542 2 234567777777665
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=1.2e-17 Score=150.82 Aligned_cols=155 Identities=17% Similarity=0.156 Sum_probs=123.3
Q ss_pred CCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEcc
Q 047977 408 LNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFD 487 (569)
Q Consensus 408 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 487 (569)
.+.++.+++.+. .+|..+. ++|+.|++++|.+.+..+..+..+++|+.|++++|++....+..+.++++|+.|+++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 345666665554 3444332 488888888888877667777788889999999988875545667888999999999
Q ss_pred CCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCcccC
Q 047977 488 GNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGKN 567 (569)
Q Consensus 488 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 567 (569)
+|.+++..+..|+.+++|++|++++|.+. .+|..+..+++|+.|++++|++++..+..+..+++|++|++++|++.+.-
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 99988777777888999999999999987 67888888999999999999998777777888999999999999987653
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=6.4e-18 Score=158.62 Aligned_cols=185 Identities=18% Similarity=0.210 Sum_probs=141.2
Q ss_pred EccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccc
Q 047977 340 DLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFS 419 (569)
Q Consensus 340 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 419 (569)
.+....+.+. ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+. +. +..+++|+.|++++|.++
T Consensus 30 ~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~ 103 (291)
T 1h6t_A 30 NLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVK 103 (291)
T ss_dssp HTTCSCTTSE--ECHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC
T ss_pred HhcCCCcccc--cchhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCC
Confidence 3444444332 2345778899999999988743 3477889999999999988843 33 788899999999999887
Q ss_pred ccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhh
Q 047977 420 GSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAF 499 (569)
Q Consensus 420 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l 499 (569)
+. ..+..++ +|+.|++++|.+.+. ..+..+++|+.|++++|++++. ..+..+++|++|++++|.+.+..+ +
T Consensus 104 ~~--~~l~~l~-~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l 174 (291)
T 1h6t_A 104 DL--SSLKDLK-KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L 174 (291)
T ss_dssp CG--GGGTTCT-TCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CC--hhhccCC-CCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--h
Confidence 52 2355555 888899988888743 4577788888888888888743 567888888888888888886555 7
Q ss_pred cCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCccee
Q 047977 500 GVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISG 541 (569)
Q Consensus 500 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 541 (569)
..+++|++|++++|.+.+. ..+..+++|+.|++++|+++.
T Consensus 175 ~~l~~L~~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEEEEEEC
T ss_pred cCCCccCEEECCCCcCCCC--hhhccCCCCCEEECcCCcccC
Confidence 8888888888888888754 347888888888888888875
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=6.9e-18 Score=148.76 Aligned_cols=154 Identities=14% Similarity=0.191 Sum_probs=120.4
Q ss_pred cCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCc
Q 047977 403 SRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLN 482 (569)
Q Consensus 403 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 482 (569)
..+++|+.+++++|.++ .++ .+..++ +|++|++++|.+. .+..+..+++|++|++++|++++..+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~-~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAH-NIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCT-TCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCC-CCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 34556666666666665 333 344554 7778888877654 234677788999999999999876788899999999
Q ss_pred EEEccCCccccchhhhhcCCCCCcEEeCcCCc-ccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCC
Q 047977 483 RVRFDGNQFTGNITRAFGVHPRLDFIRLSGNH-FIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSN 561 (569)
Q Consensus 483 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 561 (569)
+|++++|.+.+..+..++.+++|++|++++|. +. .++ .+..+++|+.|++++|.+++. + .+..+++|++|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCc
Confidence 99999999998788889999999999999998 55 444 689999999999999999863 3 7899999999999999
Q ss_pred cCcc
Q 047977 562 ELTG 565 (569)
Q Consensus 562 ~~~~ 565 (569)
++.+
T Consensus 192 ~i~~ 195 (197)
T 4ezg_A 192 TIGG 195 (197)
T ss_dssp ----
T ss_pred ccCC
Confidence 9865
No 106
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.75 E-value=1e-16 Score=157.71 Aligned_cols=335 Identities=12% Similarity=0.022 Sum_probs=238.4
Q ss_pred cccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchh
Q 047977 56 LNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPER 135 (569)
Q Consensus 56 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 135 (569)
++.+-..+|.++.+|+.+.+.. .+..+...+|.++.+|+.+++.++ +......++..+++|+.+.+..+ +. .+...
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~ 134 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVE 134 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecce
Confidence 3334445677777777777753 356666667777777777777654 33344556677777777666544 22 34445
Q ss_pred hhhcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCC
Q 047977 136 LFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNL 215 (569)
Q Consensus 136 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 215 (569)
.|.++...+....... ......+|..+++|+.+.+..+. .......|..+.+|+.+.+..+ +......++..+..|
T Consensus 135 aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L 210 (394)
T 4fs7_A 135 AFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILL 210 (394)
T ss_dssp TTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTC
T ss_pred eeecccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhcccccc
Confidence 5677655444433332 22445678999999999998653 4466678899999999999776 444556778889999
Q ss_pred CEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCcEEEccC
Q 047977 216 QHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWTELESLQIQN 295 (569)
Q Consensus 216 ~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 295 (569)
+.+.+..+... . ........+|+.+.+... .+.....++..+..++.+.+..+.. .+....+..++.++.+....
T Consensus 211 ~~i~~~~~~~~-i-~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~ 285 (394)
T 4fs7_A 211 ENMEFPNSLYY-L-GDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGS 285 (394)
T ss_dssp CBCCCCTTCCE-E-CTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECS
T ss_pred ceeecCCCceE-e-ehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc--eeeccccccccccceeccCc
Confidence 99988765432 2 223345578898888654 3445566788899999999977643 45556688899999998876
Q ss_pred CcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCC
Q 047977 296 NSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIP 375 (569)
Q Consensus 296 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 375 (569)
..+ ....+..+.+|+.+.+.++ ++.....+|.+|.+|+.+++..+ +......+|.+|.+|+.+.+..+ ++....
T Consensus 286 ~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~ 359 (394)
T 4fs7_A 286 VIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGA 359 (394)
T ss_dssp SEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT
T ss_pred eee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehH
Confidence 543 3356788999999999765 55456678999999999999754 66677789999999999999876 665777
Q ss_pred ccccCCCCCCEEEccCCcccccCCccccCCCCCCEE
Q 047977 376 PEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKF 411 (569)
Q Consensus 376 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 411 (569)
.+|.+|++|+.+++..+- . .+..++.++++|+.+
T Consensus 360 ~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 360 NAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEEE
T ss_pred HHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcEE
Confidence 899999999999997652 2 234578888888765
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=7.5e-18 Score=163.61 Aligned_cols=157 Identities=18% Similarity=0.074 Sum_probs=99.8
Q ss_pred CCCEEEccCCcccccCCchhh-ccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEE
Q 047977 407 NLNKFSVFTNNFSGSIPGDFG-KFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVR 485 (569)
Q Consensus 407 ~L~~l~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 485 (569)
.++.|++++|.+++..+..+. .+. +|+.|++++|.+.+..+..+..+++|++|++++|++....+..|.++++|++|+
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLT-NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCCCCccChhhhhhccc-ccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 345555555555544443343 333 666666666666544445566667777777777777655555677777777777
Q ss_pred ccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCc---ccCCCCCEEECCCCcceecCCcCccCCCC--CCeEeCcC
Q 047977 486 FDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDW---GECRNLSNLQLDRNKISGGIPAELGNLTR--LGVLSLDS 560 (569)
Q Consensus 486 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~n~~~~~~~~~l~~l~~--L~~L~l~~ 560 (569)
|++|.+....+..|..+++|++|++++|.+....+..| ..+++|+.|++++|.+++..+..+..++. ++.|++++
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence 77777776667777777777777777777764333334 55777777777777777655555666665 37777777
Q ss_pred CcCc
Q 047977 561 NELT 564 (569)
Q Consensus 561 n~~~ 564 (569)
||+.
T Consensus 199 N~~~ 202 (361)
T 2xot_A 199 NPLE 202 (361)
T ss_dssp SCEE
T ss_pred CCcc
Confidence 7765
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=1.4e-17 Score=156.26 Aligned_cols=190 Identities=17% Similarity=0.239 Sum_probs=155.5
Q ss_pred CcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccC
Q 047977 312 LQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNT 391 (569)
Q Consensus 312 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 391 (569)
+..+.+....+.+. ..+..+++|++|++++|.+... ..+..+++|++|++++|.++...+ +..+++|+.|++++
T Consensus 26 ~~~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 26 TIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE 99 (291)
T ss_dssp HHHHHTTCSCTTSE--ECHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred HHHHHhcCCCcccc--cchhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence 34445555555433 2345688999999999998754 358889999999999999985433 88999999999999
Q ss_pred CcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeC
Q 047977 392 NQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSL 471 (569)
Q Consensus 392 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 471 (569)
|.+.+ + ..+..+++|+.|++++|.+++. ..+..++ +|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..
T Consensus 100 n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~-~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~ 172 (291)
T 1h6t_A 100 NKVKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLP-QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 172 (291)
T ss_dssp SCCCC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCT-TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred CcCCC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCC-CCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch
Confidence 99874 3 3588999999999999999864 4566666 999999999999754 57888999999999999998543
Q ss_pred CccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCccccc
Q 047977 472 PACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGE 518 (569)
Q Consensus 472 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 518 (569)
+ +..+++|++|++++|.+++. + .+..+++|+.|++++|++...
T Consensus 173 ~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 173 P--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp G--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECC
T ss_pred h--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCC
Confidence 3 89999999999999999864 3 489999999999999998753
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=5.6e-17 Score=145.33 Aligned_cols=151 Identities=18% Similarity=0.222 Sum_probs=84.5
Q ss_pred CEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEccc
Q 047977 361 LSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSN 440 (569)
Q Consensus 361 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 440 (569)
+.++++++.++ .++..+. +.++.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..++ +|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR-SLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS-SCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc-CCCEEECCC
Confidence 45666666665 3333322 4666677766666644444566666666666666666655555555554 566666666
Q ss_pred CcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcc
Q 047977 441 NSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHF 515 (569)
Q Consensus 441 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 515 (569)
|.+....+..+..+++|+.|++++|++....+..|.++++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 655532222334455555555555555544445555555555555555555555555555555555555555554
No 110
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=4e-17 Score=156.45 Aligned_cols=218 Identities=14% Similarity=0.051 Sum_probs=146.4
Q ss_pred CCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcc----cccCCccccCCCCC
Q 047977 333 LTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQL----HGELPENISRLVNL 408 (569)
Q Consensus 333 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----~~~~~~~~~~l~~L 408 (569)
|++|+++++.+ .+..+...+|..|++|+++++.+|.+.......|.++..+..+....... .......+..+..+
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 66666666666 55545555666666666666666665555555565555555554443211 11112234445555
Q ss_pred C-EEEccCCcccccCCchhhc---cCCCCceEEcccCcCccccChhh-hCCCCCcEEEccCCcceeeCCccccCCCCCcE
Q 047977 409 N-KFSVFTNNFSGSIPGDFGK---FSPSLINVSFSNNSFSGELPYEL-CSGFALEELTVNGNNFTGSLPACMRNCSNLNR 483 (569)
Q Consensus 409 ~-~l~l~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 483 (569)
+ .+.+.... .++..+.. .+.++..+.+.+.-.. .....+ ..+++|+++++++|+++......|.+|++|++
T Consensus 179 ~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 179 ETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK 254 (329)
T ss_dssp EEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred ceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence 5 33333221 11111111 1235666666655322 111222 23789999999999998777788999999999
Q ss_pred EEccCCccccchhhhhcCCCCCc-EEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEe
Q 047977 484 VRFDGNQFTGNITRAFGVHPRLD-FIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLS 557 (569)
Q Consensus 484 L~l~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 557 (569)
+++.+| +......+|.++++|+ .+++.+ .++...+.+|.+|++|+.|++++|+++.+.+.+|.++++|+.+.
T Consensus 255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 999988 7777788999999999 999988 77767778899999999999999999999999999999999885
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=6e-17 Score=166.56 Aligned_cols=191 Identities=17% Similarity=0.255 Sum_probs=128.8
Q ss_pred CCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEcc
Q 047977 311 KLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVN 390 (569)
Q Consensus 311 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 390 (569)
.+..+.+..+.+.... .+..+++|+.|++++|.+... ..+..+++|+.|++++|.+....+ +..+++|+.|+++
T Consensus 22 ~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHHhccCCCccccc--chhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 3445555555555332 345677888888888887643 257788888888888888774332 7778888888888
Q ss_pred CCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceee
Q 047977 391 TNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGS 470 (569)
Q Consensus 391 ~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 470 (569)
+|.+.+ ++ .+..+++|+.|++++|.+.+. ..+..++ +|+.|++++|.+.+. ..+..+++|+.|++++|.+.+.
T Consensus 96 ~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~-~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 96 ENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLP-QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp SSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCT-TCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred CCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCC-ccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 887763 33 567777777787777777642 3455554 777777777777643 4566677777777777777643
Q ss_pred CCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCccccc
Q 047977 471 LPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGE 518 (569)
Q Consensus 471 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 518 (569)
.+ +..+++|+.|+|++|.+.+. ..+..+++|+.|++++|++...
T Consensus 169 ~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 169 VP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred hh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 33 66777777777777777643 2466777777777777776643
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=3.8e-17 Score=166.03 Aligned_cols=189 Identities=28% Similarity=0.300 Sum_probs=149.3
Q ss_pred CCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEcc
Q 047977 311 KLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVN 390 (569)
Q Consensus 311 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 390 (569)
+++.|++++|.+++ +|..+ .++|++|++++|.+. .++ ..+++|++|++++|.++. ++. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 89999999999885 55544 378999999999988 444 457899999999999885 554 444 89999999
Q ss_pred CCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceee
Q 047977 391 TNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGS 470 (569)
Q Consensus 391 ~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 470 (569)
+|.+.+ +|. .+++|+.|++++|.+++ +|. ..++|+.|++++|.+++ +|. +. ++|+.|++++|+++ .
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 999885 665 67899999999999885 554 33599999999999875 665 44 89999999999988 6
Q ss_pred CCccccCCCCC-------cEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCC
Q 047977 471 LPACMRNCSNL-------NRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRN 528 (569)
Q Consensus 471 ~~~~l~~~~~L-------~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~ 528 (569)
+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|++++..|..+..+++
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 666 554 67 99999999998 46777777999999999999998887777666443
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=5.5e-17 Score=166.80 Aligned_cols=192 Identities=18% Similarity=0.215 Sum_probs=155.8
Q ss_pred CCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccC
Q 047977 336 LEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFT 415 (569)
Q Consensus 336 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 415 (569)
+..+.+..+.+.+.. .+..+++|+.|++++|.+... + .+..+++|+.|++++|.+.+..+ +..+++|+.|++++
T Consensus 23 l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCccccc--chhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 334455555555332 356789999999999998743 3 58889999999999999985433 88899999999999
Q ss_pred CcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccch
Q 047977 416 NNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNI 495 (569)
Q Consensus 416 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 495 (569)
|.+.+. ..+..++ +|+.|++++|.+.+ + ..+..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+.+..
T Consensus 97 N~l~~l--~~l~~l~-~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 97 NKIKDL--SSLKDLK-KLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp SCCCCC--TTSTTCT-TCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred CCCCCC--hhhccCC-CCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 998753 3566665 99999999999875 3 4688899999999999999843 67889999999999999998766
Q ss_pred hhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcceecCC
Q 047977 496 TRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKISGGIP 544 (569)
Q Consensus 496 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 544 (569)
+ +..+++|++|++++|.+.+. ..+..+++|+.|++++|+++....
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence 6 88999999999999998854 568999999999999999886433
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.71 E-value=1.1e-16 Score=143.41 Aligned_cols=152 Identities=18% Similarity=0.168 Sum_probs=83.2
Q ss_pred CEEEcccCcccccCCccccCCCCCCEEEccCCcccccCC-ccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcc
Q 047977 361 LSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELP-ENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFS 439 (569)
Q Consensus 361 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 439 (569)
+.++++++.++ .++..+ .+.++.|++++|.+.+..+ ..+..+++|+.|++++|.+++..+..+..++ +|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS-GVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECC
T ss_pred CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC-CCCEEECC
Confidence 36666666665 233332 2345666666666664422 2355566666666666666554444455444 55555555
Q ss_pred cCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCccc
Q 047977 440 NNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFI 516 (569)
Q Consensus 440 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 516 (569)
+|.+.+..+..+..+++|++|++++|++.+..+..+.++++|++|++++|.+++..|..|..+++|++|++++|++.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 55555444444555555555555555555444555555555555555555555555555555555555555555543
No 115
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.71 E-value=8.8e-16 Score=149.99 Aligned_cols=268 Identities=13% Similarity=0.132 Sum_probs=199.5
Q ss_pred cCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcE
Q 047977 17 GTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTH 96 (569)
Q Consensus 17 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 96 (569)
.-+..++.+.+.+. ++.+...+|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+..+...+|.+|++|+.
T Consensus 110 ~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 110 EILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp EECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred EecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 34477788887764 555677778776 6888888765 555566677775 688888875 567777778888888888
Q ss_pred EEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccCCc
Q 047977 97 LSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNK 176 (569)
Q Consensus 97 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 176 (569)
+++.++.+......+|. +.+|+.+.+..+ ++ .++..+|.++++|+.+.+..+ +......+|.. .+|+.+.+.. .
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~ 258 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-G 258 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-T
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-C
Confidence 88888877755555555 578888888754 44 566777888888888888764 45455566666 6788888854 4
Q ss_pred cccCCCcCcCCCCCCcEEEcccCcce-----ecCCccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEccccccee
Q 047977 177 FSGPIPGDIGLMSNIQLVELFNNSFT-----GQIPSSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSG 251 (569)
Q Consensus 177 ~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 251 (569)
+.......|..|++|+.+.+.++... ..-..+|..|++|+.+.+.+ .+..+...+|.+|++|+.+.+..+ ++.
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 55566778888888998888876654 35567788899999999984 577777888999999999999654 666
Q ss_pred ccCccCcCCCCCCEEeCcCCcCccccCccccCCCC-CCcEEEccCCcce
Q 047977 252 GLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWT-ELESLQIQNNSFM 299 (569)
Q Consensus 252 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~ 299 (569)
....+|.++ +|+.+.+.++... .+....+.+++ .++.+++..+.+.
T Consensus 337 I~~~aF~~~-~L~~l~l~~n~~~-~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 337 INFSAFNNT-GIKEVKVEGTTPP-QVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp ECTTSSSSS-CCCEEEECCSSCC-BCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred EcHHhCCCC-CCCEEEEcCCCCc-ccccccccCCCCCccEEEeCHHHHH
Confidence 777888888 9999999988776 45555577775 6889988876543
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=1.3e-16 Score=139.75 Aligned_cols=132 Identities=22% Similarity=0.272 Sum_probs=108.3
Q ss_pred ceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCc-cccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcC
Q 047977 434 INVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPA-CMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSG 512 (569)
Q Consensus 434 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 512 (569)
+.++++++.+. .+|..+.. ++++|++++|.+....+. .+..+++|++|++++|.+++..|..|+.+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 66777777775 56654433 788888888888754443 478888999999999999888888888999999999999
Q ss_pred CcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCcccCC
Q 047977 513 NHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGKNS 568 (569)
Q Consensus 513 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 568 (569)
|.+.+..+..|+.+++|+.|++++|++++..|..+..+++|++|++++|++.+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99887777778889999999999999998888888899999999999999887643
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.70 E-value=3.1e-16 Score=141.50 Aligned_cols=152 Identities=26% Similarity=0.282 Sum_probs=109.4
Q ss_pred CCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEccc
Q 047977 22 LTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCY 101 (569)
Q Consensus 22 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 101 (569)
-+.++.+++.+. .+|..+. ++|++|++++|.+.+..+..|..+++|++|++++|.+..+....|..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 456777777666 4454443 6777777777777766677777777777777777777776666677777777777777
Q ss_pred ccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccCCccc
Q 047977 102 NELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFS 178 (569)
Q Consensus 102 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 178 (569)
|.+....+..+..+++|++|++++|.++ .+|..+ ..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGI-ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTG-GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCccc-ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 7777555556677777888888777776 555554 67777888888887777555556777778888888877664
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=9.6e-17 Score=141.41 Aligned_cols=150 Identities=13% Similarity=0.142 Sum_probs=86.2
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEE
Q 047977 382 ASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELT 461 (569)
Q Consensus 382 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 461 (569)
++|+.+++++|.+. .++ .+..+++|+.|++++|.++ .+..+..++ +|++|++++|.+.+..+..+..+++|++|+
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLS-NLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCT-TCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCC-CCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 33444444444443 222 3444444444444444332 112333333 666666666666554555566666777777
Q ss_pred ccCCcceeeCCccccCCCCCcEEEccCCc-cccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcce
Q 047977 462 VNGNNFTGSLPACMRNCSNLNRVRFDGNQ-FTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKIS 540 (569)
Q Consensus 462 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 540 (569)
+++|.+++..+..+..+++|++|++++|. +.. ++ .++.+++|++|++++|.+.+. + .+..+++|+.|++++|++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 77777765556666777777777777776 443 33 467777777777777777643 2 6777777777777777765
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.69 E-value=1.9e-16 Score=153.71 Aligned_cols=176 Identities=18% Similarity=0.109 Sum_probs=98.6
Q ss_pred CEEEccCCccccccCcccccCCCCCEEEcccCcccccCCcccc-CCCCCCEEEccCCcccccCCccccCCCCCCEEEccC
Q 047977 337 EKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIG-SMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFT 415 (569)
Q Consensus 337 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 415 (569)
+.++++++.+. .+|..+. +.++.|++++|.++......+. .+++|+.|++++|.+.+..+..+..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 45666666665 3333332 3466677777766655555555 666666666666666654445566666666666666
Q ss_pred CcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccc---cCCCCCcEEEccCCccc
Q 047977 416 NNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACM---RNCSNLNRVRFDGNQFT 492 (569)
Q Consensus 416 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~ 492 (569)
|.++...+..+..+. +|+.|++++|.+.+..+..+..+++|+.|++++|.++...+..+ ..+++|+.|+|++|.+.
T Consensus 98 N~l~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQ-ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCc-CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 666544444444444 66666666666654445555555666666666666552222222 34556666666666665
Q ss_pred cchhhhhcCCCC--CcEEeCcCCccc
Q 047977 493 GNITRAFGVHPR--LDFIRLSGNHFI 516 (569)
Q Consensus 493 ~~~~~~l~~l~~--L~~L~l~~~~~~ 516 (569)
...+..+..++. ++.|++++|++.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 544455555554 255666665543
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=8.9e-17 Score=148.29 Aligned_cols=171 Identities=16% Similarity=0.280 Sum_probs=118.8
Q ss_pred cCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCce
Q 047977 356 NLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLIN 435 (569)
Q Consensus 356 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~ 435 (569)
.+.++..++++++.+++.. .+..+++|+.|++++|.+. .++ .+..+++|+.|++++|.+++..+ +..++ +|+.
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~-~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLT-KLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCS-SCCE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCC-CCCE
Confidence 3455666677777766332 4667788888888888776 444 57778888888888887775433 55555 7888
Q ss_pred EEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcc
Q 047977 436 VSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHF 515 (569)
Q Consensus 436 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 515 (569)
|++++|++.+ ++. +.. ++|+.|++++|++++ . ..+..+++|++|++++|.+++. + .++.+++|++|++++|++
T Consensus 90 L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 90 LSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp EECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCC
T ss_pred EECCCCccCC-cCc-ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcC
Confidence 8888887764 332 222 677888888887773 3 3477777788888888777754 2 567777888888888877
Q ss_pred cccCCcCcccCCCCCEEECCCCcceec
Q 047977 516 IGEISPDWGECRNLSNLQLDRNKISGG 542 (569)
Q Consensus 516 ~~~~~~~l~~~~~L~~L~l~~n~~~~~ 542 (569)
.+. ..+..+++|+.|++++|.++..
T Consensus 163 ~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 163 TNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cch--HHhccCCCCCEEeCCCCcccCC
Confidence 655 5677777788888877777743
No 121
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.68 E-value=5.7e-15 Score=144.27 Aligned_cols=268 Identities=16% Similarity=0.119 Sum_probs=217.7
Q ss_pred ccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEcccccccccCCccccCCCCCC
Q 047977 40 MGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLT 119 (569)
Q Consensus 40 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 119 (569)
+..+..++.+.+.+. ++.....+|.++ +|+.+++..+ +..+...+|.++ +|+.+.+.+ .+......+|..|++|+
T Consensus 109 ~~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 109 TEILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp EEECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred EEecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence 445688999999864 665667788886 8999999866 777888889884 799999987 56656678899999999
Q ss_pred EEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCCCCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccC
Q 047977 120 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSKLSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNN 199 (569)
Q Consensus 120 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 199 (569)
.+++..+.++ .++...|. +.+|+.+.+..+ +......+|..+++|+.+.+..+ +..+....|.. .+|+.+.+. +
T Consensus 184 ~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~ 257 (401)
T 4fdw_A 184 KADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-N 257 (401)
T ss_dssp EEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-T
T ss_pred eeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-C
Confidence 9999999887 67777777 589999999854 66677788999999999999874 55566677777 789999994 4
Q ss_pred cceecCCccccCCCCCCEEEcccCCCC-----cCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCc
Q 047977 200 SFTGQIPSSLGQLKNLQHLDLRMNALN-----STIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLS 274 (569)
Q Consensus 200 ~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 274 (569)
.+...-..+|..|++|+.+.+.++... .....+|..|++|+.+.+.. .++.....+|.++++|+.+.+..+ +.
T Consensus 258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~ 335 (401)
T 4fdw_A 258 GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT 335 (401)
T ss_dssp TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC
T ss_pred CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc
Confidence 455566788999999999999887664 46678899999999999984 577777888999999999999665 43
Q ss_pred cccCccccCCCCCCcEEEccCCcceeeCCccccCCC-CCcEEecccccc
Q 047977 275 GEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLT-KLQYLFLYRNHF 322 (569)
Q Consensus 275 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~ 322 (569)
.+...+|.++ +|+.+++.++.........|..++ .++.+++..+.+
T Consensus 336 -~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 336 -QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp -EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred -EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 6677779999 999999999987765566677774 788999987654
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=5.6e-16 Score=142.95 Aligned_cols=160 Identities=23% Similarity=0.332 Sum_probs=84.8
Q ss_pred CCCCCCcccCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCC
Q 047977 3 LSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLET 82 (569)
Q Consensus 3 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 82 (569)
++++.+.++. .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+..
T Consensus 26 l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~ 99 (263)
T 1xeu_A 26 LGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN 99 (263)
T ss_dssp HTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC
T ss_pred hcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC
Confidence 4455555433 35566666666666666552 23 45556666666666666653332 5566666666666665554
Q ss_pred CCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCC
Q 047977 83 PDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVS 162 (569)
Q Consensus 83 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 162 (569)
... +.. ++|++|++++|.+.+ . ..+..+++|++|++++|.+++. + .+..+++|++|++++|.+.+. ..+.
T Consensus 100 l~~--~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~--~l~~l~~L~~L~L~~N~i~~~--~~l~ 169 (263)
T 1xeu_A 100 LNG--IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI-V--MLGFLSKLEVLDLHGNEITNT--GGLT 169 (263)
T ss_dssp CTT--CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC-G--GGGGCTTCCEEECTTSCCCBC--TTST
T ss_pred cCc--ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC-h--HHccCCCCCEEECCCCcCcch--HHhc
Confidence 332 222 556666666665552 2 2355555555555555555532 2 235555555555555555433 3444
Q ss_pred CCCCCCEEEccCCccc
Q 047977 163 KLSNLTVLRLATNKFS 178 (569)
Q Consensus 163 ~~~~L~~L~l~~~~~~ 178 (569)
.+++|+.|++++|.+.
T Consensus 170 ~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 170 RLKKVNWIDLTGQKCV 185 (263)
T ss_dssp TCCCCCEEEEEEEEEE
T ss_pred cCCCCCEEeCCCCccc
Confidence 5555555555555443
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=5.6e-16 Score=148.48 Aligned_cols=103 Identities=12% Similarity=0.048 Sum_probs=84.3
Q ss_pred CCCCCEEEccCCccccCCCcCcCCCCCCcEEEcccCcceecCCccccCCCCCC-EEEcccCCCCcCCCcCCcCCCCCCEE
Q 047977 164 LSNLTVLRLATNKFSGPIPGDIGLMSNIQLVELFNNSFTGQIPSSLGQLKNLQ-HLDLRMNALNSTIPPELGLCTNLSFL 242 (569)
Q Consensus 164 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~l 242 (569)
+++|+.++++++.+..+....|..|.+|+.+++..+ +..+-+.+|..+++|+ .+++.+ .+..+...+|.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 678888888888887777778888888888888886 6656667788888888 888887 6777777888888888888
Q ss_pred EcccccceeccCccCcCCCCCCEEeC
Q 047977 243 ALAMNQLSGGLPLSLSNLSRLNELGL 268 (569)
Q Consensus 243 ~l~~~~~~~~~~~~l~~~~~L~~L~l 268 (569)
++..+.++.....+|.++++|+.++.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 88888888777788888888888764
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=2e-19 Score=183.90 Aligned_cols=209 Identities=14% Similarity=0.091 Sum_probs=134.7
Q ss_pred cCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCE
Q 047977 331 GKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNK 410 (569)
Q Consensus 331 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 410 (569)
..++.|+.|++++|.+. .+|..++.+++|++|++++|......+... ..+...+..|..+..+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhccc
Confidence 45677888888888776 567777778888888776553110000000 001122233334444455555
Q ss_pred EE-ccCCcccccC--------CchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCC
Q 047977 411 FS-VFTNNFSGSI--------PGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNL 481 (569)
Q Consensus 411 l~-l~~~~~~~~~--------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 481 (569)
++ ++.+.+.... ...+.. ..|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+.++++|
T Consensus 414 L~~l~~n~~~~L~~l~l~~n~i~~l~~--~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 488 (567)
T 1dce_A 414 VDPMRAAYLDDLRSKFLLENSVLKMEY--ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCL 488 (567)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHHHHHH--TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTC
T ss_pred CcchhhcccchhhhhhhhcccccccCc--cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCC
Confidence 44 3332221000 001111 267888888888874 564 777888888888888888 778888888888
Q ss_pred cEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccC-CcCcccCCCCCEEECCCCcceecCCcC---ccCCCCCCeEe
Q 047977 482 NRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEI-SPDWGECRNLSNLQLDRNKISGGIPAE---LGNLTRLGVLS 557 (569)
Q Consensus 482 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~n~~~~~~~~~---l~~l~~L~~L~ 557 (569)
+.|++++|.+++ +| .++.+++|++|++++|.+++.. |..++.+++|+.|++++|++++..+.. +..+++|+.|+
T Consensus 489 ~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 489 EVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 888888888885 45 6888888888888888887665 788888888888888888888654432 23478888876
Q ss_pred C
Q 047977 558 L 558 (569)
Q Consensus 558 l 558 (569)
+
T Consensus 567 l 567 (567)
T 1dce_A 567 T 567 (567)
T ss_dssp C
T ss_pred C
Confidence 4
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=1e-15 Score=133.87 Aligned_cols=128 Identities=24% Similarity=0.290 Sum_probs=95.0
Q ss_pred ceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCC
Q 047977 434 INVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGN 513 (569)
Q Consensus 434 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 513 (569)
+.++++++.+. .+|..+ .+++++|++++|.++ .+|..+.++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45666666665 455433 247777888887777 56677777888888888888887777777788888888888888
Q ss_pred cccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCcc
Q 047977 514 HFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTG 565 (569)
Q Consensus 514 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 565 (569)
.++...+..|..+++|+.|++++|.++...+..+..+++|++|++++|++..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 8776666678888888888888888886666667778888888888888754
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=3.4e-16 Score=134.12 Aligned_cols=131 Identities=16% Similarity=0.146 Sum_probs=79.4
Q ss_pred CCceEEcccCcCc-cccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeC
Q 047977 432 SLINVSFSNNSFS-GELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRL 510 (569)
Q Consensus 432 ~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 510 (569)
+++.|++++|.+. +.+|..+..+++|+.|++++|.++.. ..+..+++|++|++++|.+.+..|..++.+++|++|++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 5666666666654 34455555566666666666666533 55566666666666666666555555556666666666
Q ss_pred cCCcccccC-CcCcccCCCCCEEECCCCcceecCC---cCccCCCCCCeEeCcCCcCc
Q 047977 511 SGNHFIGEI-SPDWGECRNLSNLQLDRNKISGGIP---AELGNLTRLGVLSLDSNELT 564 (569)
Q Consensus 511 ~~~~~~~~~-~~~l~~~~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l~~n~~~ 564 (569)
++|.+.+.. +..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|++.
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 666665431 1456666666666666666664333 35566666666666666653
No 127
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.64 E-value=7.1e-14 Score=137.39 Aligned_cols=159 Identities=12% Similarity=0.090 Sum_probs=81.2
Q ss_pred CcccCCcCccCCC-CCCEEeCCCCcCcccCCccccCCCCCcEEEccCCc---cccCcchhccCCCCCCEEECCCCCCCCC
Q 047977 8 ISGPIPPAIGTLS-NLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNS---LNGAFPFQLSNLRKVRYLDLGGNFLETP 83 (569)
Q Consensus 8 ~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 83 (569)
++.+...+|.+++ .|+.+.+..+ ++.+...+|.+|.+|+.+.+..+. ++..-..+|.++.+|+.+.+..+ +..+
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 4455566676664 4777777654 554666677777777777765542 33333455666666666655433 3444
Q ss_pred CCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCcccccCCcCCCC
Q 047977 84 DWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQGKLSPNVSK 163 (569)
Q Consensus 84 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 163 (569)
...+|..+.+|+.+.+...... .....+..+..|+.+.+..+. + .+...+|.+ ..|+.+.+...-. .....++..
T Consensus 129 ~~~aF~~c~~L~~i~lp~~~~~-I~~~~F~~c~~L~~i~~~~~~-~-~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~ 203 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEGVTS-VADGMFSYCYSLHTVTLPDSV-T-AIEERAFTG-TALTQIHIPAKVT-RIGTNAFSE 203 (394)
T ss_dssp CTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTTC-C-EECTTTTTT-CCCSEEEECTTCC-EECTTTTTT
T ss_pred hhhhhhhhcccccccccceeee-ecccceeccccccccccccee-e-Eeccccccc-cceeEEEECCccc-ccccchhhh
Confidence 4455556666666665443222 333445555555555554431 1 233333332 3455555443221 133334444
Q ss_pred CCCCCEEEcc
Q 047977 164 LSNLTVLRLA 173 (569)
Q Consensus 164 ~~~L~~L~l~ 173 (569)
+.+++.....
T Consensus 204 c~~l~~~~~~ 213 (394)
T 4gt6_A 204 CFALSTITSD 213 (394)
T ss_dssp CTTCCEEEEC
T ss_pred ccccceeccc
Confidence 4455444443
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=1.8e-15 Score=130.75 Aligned_cols=133 Identities=16% Similarity=0.208 Sum_probs=102.7
Q ss_pred CCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCc
Q 047977 432 SLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLS 511 (569)
Q Consensus 432 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 511 (569)
..+.++++++.+. .+|..+ .++|++|++++|++.+..+..+.++++|++|++++|.+++..+..++.+++|++|+++
T Consensus 8 ~~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 8 SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp ETTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 3456777777665 444333 3578888888888875555567888888888888888887767777888888888888
Q ss_pred CCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCcCcccC
Q 047977 512 GNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNELTGKN 567 (569)
Q Consensus 512 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 567 (569)
+|.+++..+..++.+++|+.|++++|.+++..+..+..+++|++|++++|++.+..
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 88888666666788888888888888888766666788888888999888888754
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=4.3e-16 Score=130.54 Aligned_cols=128 Identities=19% Similarity=0.168 Sum_probs=104.9
Q ss_pred CCCceEEcccCcCc-cccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEe
Q 047977 431 PSLINVSFSNNSFS-GELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIR 509 (569)
Q Consensus 431 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 509 (569)
++++.|++++|.+. +.+|..+..+++|+.|++++|.+++. ..+.++++|++|++++|.+.+.+|..++.+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 47888888888887 56777777788899999999988744 6788889999999999999877788888899999999
Q ss_pred CcCCccccc-CCcCcccCCCCCEEECCCCcceecCC---cCccCCCCCCeEeCcC
Q 047977 510 LSGNHFIGE-ISPDWGECRNLSNLQLDRNKISGGIP---AELGNLTRLGVLSLDS 560 (569)
Q Consensus 510 l~~~~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l~~ 560 (569)
+++|++.+. .+..++.+++|+.|++++|.+++..+ ..+..+++|++|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999998753 34678889999999999999886555 4678899999998864
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=3.6e-18 Score=174.64 Aligned_cols=204 Identities=16% Similarity=0.151 Sum_probs=144.0
Q ss_pred cCCCCCcEEecccccccccCCccccCCCCCCEEEccCCc-------------cccccCcccccCCCCCEEE-cccCcccc
Q 047977 307 GLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQ-------------LSGTIPPTLWNLTNLLSLQ-LFFNNLSG 372 (569)
Q Consensus 307 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~L~~L~-l~~~~~~~ 372 (569)
...+.|+.|++++|.+. .+|..++.+++|++|++++|. .....+..+..+++|+.|+ ++.+.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 34567777777777766 566667777777777775543 2223344556666666666 4444322
Q ss_pred cCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhh
Q 047977 373 TIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELC 452 (569)
Q Consensus 373 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 452 (569)
.|+.+.+.+|.+.. ++ ...|+.|++++|.+++ +|. +..++ +|+.|++++|.+. .+|..+.
T Consensus 424 ----------~L~~l~l~~n~i~~-l~-----~~~L~~L~Ls~n~l~~-lp~-~~~l~-~L~~L~Ls~N~l~-~lp~~~~ 483 (567)
T 1dce_A 424 ----------DLRSKFLLENSVLK-ME-----YADVRVLHLAHKDLTV-LCH-LEQLL-LVTHLDLSHNRLR-ALPPALA 483 (567)
T ss_dssp ----------HHHHHHHHHHHHHH-HH-----HTTCSEEECTTSCCSS-CCC-GGGGT-TCCEEECCSSCCC-CCCGGGG
T ss_pred ----------hhhhhhhhcccccc-cC-----ccCceEEEecCCCCCC-CcC-ccccc-cCcEeecCccccc-ccchhhh
Confidence 23333334444432 11 1247788888888875 454 66666 8888999988887 7788888
Q ss_pred CCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccch-hhhhcCCCCCcEEeCcCCcccccCCcC---cccCCC
Q 047977 453 SGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNI-TRAFGVHPRLDFIRLSGNHFIGEISPD---WGECRN 528 (569)
Q Consensus 453 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~---l~~~~~ 528 (569)
.+++|+.|++++|.+++ +| .+.++++|+.|++++|.+++.. |..++.+++|+.|++++|++.+..+.. +..+|+
T Consensus 484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~ 561 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 561 (567)
T ss_dssp GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTT
T ss_pred cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcc
Confidence 89999999999999984 56 7889999999999999998776 888999999999999999988654432 445889
Q ss_pred CCEEEC
Q 047977 529 LSNLQL 534 (569)
Q Consensus 529 L~~L~l 534 (569)
|+.|++
T Consensus 562 L~~L~l 567 (567)
T 1dce_A 562 VSSILT 567 (567)
T ss_dssp CSEEEC
T ss_pred cCccCC
Confidence 998864
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=4.2e-15 Score=127.24 Aligned_cols=133 Identities=16% Similarity=0.116 Sum_probs=87.7
Q ss_pred CCCCEEEccCCccc-ccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEE
Q 047977 406 VNLNKFSVFTNNFS-GSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRV 484 (569)
Q Consensus 406 ~~L~~l~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 484 (569)
++++.+++++|.++ +.+|..+..++ +|++|++++|.+.+. ..+..+++|++|++++|.+.+..|..+.++++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFV-NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGG-GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCC-CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 45556666666555 34444444444 666666666666533 455666777777777777775566666667777777
Q ss_pred EccCCccccch-hhhhcCCCCCcEEeCcCCcccccCC---cCcccCCCCCEEECCCCccee
Q 047977 485 RFDGNQFTGNI-TRAFGVHPRLDFIRLSGNHFIGEIS---PDWGECRNLSNLQLDRNKISG 541 (569)
Q Consensus 485 ~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~n~~~~ 541 (569)
++++|.+++.. +..++.+++|++|++++|++.+..+ ..+..+++|+.|++++|.+..
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 77777776532 2567777778888887777774433 357777778888887777763
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.58 E-value=8.1e-16 Score=162.36 Aligned_cols=223 Identities=18% Similarity=0.180 Sum_probs=109.3
Q ss_pred CCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCCCCCEEEc
Q 047977 310 TKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDV 389 (569)
Q Consensus 310 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 389 (569)
+.++.|++.++.+.. .+.. .|+.++++.+.+. .+++..|.+. ..+..+..++.|+.|++
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~-----~l~~l~Ls~~~i~--------------~~~~~~n~~~-~~~~~~~~l~~L~~L~L 231 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQA-----LLQHKKLSQYSID--------------EDDDIENRMV-MPKDSKYDDQLWHALDL 231 (727)
T ss_dssp ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred CccceEEeeCCCCCc-chhh-----HhhcCccCccccc--------------Ccccccccee-cChhhhccCCCCcEEEC
Confidence 456777777776653 2222 2344444444433 1222233333 34555666777777777
Q ss_pred cCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCccee
Q 047977 390 NTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTG 469 (569)
Q Consensus 390 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 469 (569)
++|.+. .++..+..+++|+.|++++|.++ .+|..+..+. +|+.|+|++|.++ .+|..+..+++|+.|+|++|.++
T Consensus 232 s~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~-~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~- 306 (727)
T 4b8c_D 232 SNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLS-NLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT- 306 (727)
T ss_dssp TTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGT-TCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-
T ss_pred CCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCC-CCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-
Confidence 777776 56666667788888888888877 6777777776 8888888888887 67888888889999999999887
Q ss_pred eCCccccCCCCCcEEEccCCccccchhhhhcCCCC-CcEEeCcCCcccccCCcCcccCCCCCEEECCCC--------cce
Q 047977 470 SLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPR-LDFIRLSGNHFIGEISPDWGECRNLSNLQLDRN--------KIS 540 (569)
Q Consensus 470 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n--------~~~ 540 (569)
.+|..|.++++|+.|+|++|.+++.+|..+..+.. ...+++++|.+.+.+|.. |+.|+++.| .+.
T Consensus 307 ~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~ 380 (727)
T 4b8c_D 307 TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQ 380 (727)
T ss_dssp CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--------------------------
T ss_pred ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCcc
Confidence 77878888999999999999998888877755432 233678888887666643 556666666 333
Q ss_pred ecCCcCccCCCCCCeEeCcCCcCc
Q 047977 541 GGIPAELGNLTRLGVLSLDSNELT 564 (569)
Q Consensus 541 ~~~~~~l~~l~~L~~L~l~~n~~~ 564 (569)
+..+..+..+..++...++.|.+.
T Consensus 381 ~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 381 QSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ---------------------CCC
T ss_pred ccccchhhcccccceeeeeccccc
Confidence 344444555666677777777775
No 133
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.57 E-value=7.4e-13 Score=130.13 Aligned_cols=124 Identities=15% Similarity=0.212 Sum_probs=63.4
Q ss_pred CCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCc
Q 047977 432 SLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLS 511 (569)
Q Consensus 432 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 511 (569)
.|+.+.+.+.... .....+..+.+|+.+.+.. .+......+|.+|.+|+.++|..+ ++.....+|.+|++|+++.+.
T Consensus 266 ~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 266 YLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIP 342 (394)
T ss_dssp SCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred cccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEEC
Confidence 4555554433221 2223445556666666643 333344456666777777776543 444455666677777777765
Q ss_pred CCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCCCeEeCcCCc
Q 047977 512 GNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRLGVLSLDSNE 562 (569)
Q Consensus 512 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 562 (569)
.+ ++.....+|.+|++|+.+++.++.... .++..+++|+.+.+..+.
T Consensus 343 ~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 343 SS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp TT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC---------
T ss_pred cc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCC
Confidence 43 443444557777777777776665432 345566666666665543
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.57 E-value=2.5e-14 Score=125.13 Aligned_cols=127 Identities=25% Similarity=0.295 Sum_probs=69.2
Q ss_pred cCCCCCCcccCCcCccCCCCCCEEeCCCCcCcccCCc-cccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCC
Q 047977 2 DLSHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPS-EMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFL 80 (569)
Q Consensus 2 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 80 (569)
+++++++.. +|..+.. ++++|++++|.+....+. .+.++++|++|++++|.+++..|..|.++++|++|++++|.+
T Consensus 14 ~~s~~~l~~-ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 14 DCTGRGLKE-IPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp ECTTSCCSS-CCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred EcCCCCcCc-CccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence 455555542 2332222 556666666655544332 355555666666666655555555555556666666666655
Q ss_pred CCCCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcccCccccC
Q 047977 81 ETPDWSKFSNMPSLTHLSLCYNELTLEFPSFILTCRNLTYLDLSLNKLSGL 131 (569)
Q Consensus 81 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 131 (569)
....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 555555555555566666665555555555555555555555555555433
No 135
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=5.4e-15 Score=123.78 Aligned_cols=127 Identities=17% Similarity=0.186 Sum_probs=78.2
Q ss_pred CCCCEEEccCCccc-ccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEE
Q 047977 406 VNLNKFSVFTNNFS-GSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRV 484 (569)
Q Consensus 406 ~~L~~l~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 484 (569)
++++.+++++|.++ +.+|..+..++ +|+.|++++|.+.+. ..+..+++|+.|++++|.+++..|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFE-ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCT-TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcC-CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 44455555555544 34444444443 555556655555433 445556677777777777764455556667777777
Q ss_pred EccCCccccc-hhhhhcCCCCCcEEeCcCCcccccCC---cCcccCCCCCEEECC
Q 047977 485 RFDGNQFTGN-ITRAFGVHPRLDFIRLSGNHFIGEIS---PDWGECRNLSNLQLD 535 (569)
Q Consensus 485 ~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~ 535 (569)
++++|.+++. .+..++.+++|++|++++|++.+..+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777777653 33667777777777777777765544 357777777777765
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=5.1e-14 Score=123.03 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=66.2
Q ss_pred CCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCc
Q 047977 432 SLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLS 511 (569)
Q Consensus 432 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 511 (569)
+++.|++++|.+. .+|..+..+++|+.|++++|.++...+..|.++++|++|++++|.++...+..|+.+++|++|+++
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 5566666666554 445555556666666666666664444556666666666666666665555566666666666666
Q ss_pred CCcccccCCcCcccCCCCCEEECCCCcce
Q 047977 512 GNHFIGEISPDWGECRNLSNLQLDRNKIS 540 (569)
Q Consensus 512 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 540 (569)
+|.+....+..|..+++|+.|++++|++.
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 66666444445666666666666666554
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=1.6e-14 Score=124.63 Aligned_cols=132 Identities=13% Similarity=0.116 Sum_probs=59.9
Q ss_pred ccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCC
Q 047977 402 ISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNL 481 (569)
Q Consensus 402 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 481 (569)
+..+.+++.+++++|.++. ++ .+....++|+.|++++|.+.+. ..+..+++|+.|++++|.++...+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch-hH-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 3445555666666655552 22 2333333555555555554432 234444455555555555542222223444555
Q ss_pred cEEEccCCccccchhh--hhcCCCCCcEEeCcCCcccccCCcC----cccCCCCCEEECCCCcc
Q 047977 482 NRVRFDGNQFTGNITR--AFGVHPRLDFIRLSGNHFIGEISPD----WGECRNLSNLQLDRNKI 539 (569)
Q Consensus 482 ~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~n~~ 539 (569)
++|++++|.+.. ++. .++.+++|++|++++|++. ..|.. +..+++|+.|++++|..
T Consensus 91 ~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 555555554432 222 3444555555555555544 22322 44444555555544443
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=1.9e-13 Score=117.99 Aligned_cols=128 Identities=23% Similarity=0.262 Sum_probs=66.7
Q ss_pred CEEeCCCCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEEcccc
Q 047977 23 TFLDLNNNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGNFLETPDWSKFSNMPSLTHLSLCYN 102 (569)
Q Consensus 23 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 102 (569)
+.++++++++. .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.......|..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 45555555554 2232222 45555555555555444444555555555555555555554444555555555555555
Q ss_pred cccccCCccccCCCCCCEEEcccCccccCCchhhhhcCCCCcEEeccCCccc
Q 047977 103 ELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTDNQFQ 154 (569)
Q Consensus 103 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 154 (569)
.+.+..+..+..+++|++|++++|.++ .++...|..+++|++|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCee
Confidence 555444444455555555555555555 334444455555555555555544
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=3e-16 Score=138.35 Aligned_cols=132 Identities=14% Similarity=0.168 Sum_probs=71.9
Q ss_pred hhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCC
Q 047977 425 DFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPR 504 (569)
Q Consensus 425 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 504 (569)
.+..++ +|++|++++|.+.+ +| .+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+++ ++ .++.+++
T Consensus 43 ~~~~l~-~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLK-ACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHTT-TCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred HHhcCC-CCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 444444 55555555555543 34 4555556666666666555 445445555566666666666554 22 3555666
Q ss_pred CcEEeCcCCcccccCC-cCcccCCCCCEEECCCCcceecCCcC----------ccCCCCCCeEeCcCCcCc
Q 047977 505 LDFIRLSGNHFIGEIS-PDWGECRNLSNLQLDRNKISGGIPAE----------LGNLTRLGVLSLDSNELT 564 (569)
Q Consensus 505 L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~----------l~~l~~L~~L~l~~n~~~ 564 (569)
|++|++++|.+.+..+ ..+..+++|+.|++++|++.+..|.. +..+++|++|+ +|+++
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 6666666666553221 24555666666666666665443332 55566666665 55554
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.49 E-value=8.8e-15 Score=154.48 Aligned_cols=142 Identities=27% Similarity=0.248 Sum_probs=77.2
Q ss_pred CccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCccccccCcccccCCCCCEEEcccCcccccCCccccCCC
Q 047977 303 PPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSGTIPPTLWNLTNLLSLQLFFNNLSGTIPPEIGSMA 382 (569)
Q Consensus 303 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 382 (569)
+..+..++.|+.|++++|.+. .++..+..+++|++|+|++|.+. .++..|..+++|++|++++|.++ .++..+..++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 344555556666666666555 44444445566666666666655 44555566666666666666655 4455556666
Q ss_pred CCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccC
Q 047977 383 SLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELP 448 (569)
Q Consensus 383 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 448 (569)
+|+.|++++|.+. .+|..+..+++|+.|++++|.+++.+|..+.........+++++|.+.+.+|
T Consensus 294 ~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 294 QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 6666666666555 5555566666666666666666655555443322122234555555554444
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=1.5e-13 Score=117.35 Aligned_cols=107 Identities=18% Similarity=0.194 Sum_probs=71.8
Q ss_pred CcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCC
Q 047977 457 LEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDR 536 (569)
Q Consensus 457 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 536 (569)
.+.++++++.++ .+|..+. ++|++|++++|.+++..+..|+.+++|++|++++|.+.+..+..|..+++|+.|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 356666666666 4554442 6677777777777766666677777777777777777655555567777777777777
Q ss_pred CcceecCCcCccCCCCCCeEeCcCCcCccc
Q 047977 537 NKISGGIPAELGNLTRLGVLSLDSNELTGK 566 (569)
Q Consensus 537 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 566 (569)
|++++..+..+..+++|++|++++|+++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 777765555677777777777777777654
No 142
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=9.9e-14 Score=119.56 Aligned_cols=127 Identities=13% Similarity=0.145 Sum_probs=90.7
Q ss_pred CCceEEcccCcCccccChhhhCC-CCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeC
Q 047977 432 SLINVSFSNNSFSGELPYELCSG-FALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRL 510 (569)
Q Consensus 432 ~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 510 (569)
+|+.|++++|.+. .++. +..+ ++|+.|++++|.+++. ..+..+++|++|++++|.+++..+..++.+++|++|++
T Consensus 20 ~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 20 RDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp SCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 7788888888776 3343 3343 4788888888877743 56777788888888888887655555677888888888
Q ss_pred cCCcccccCCc--CcccCCCCCEEECCCCcceecCCc----CccCCCCCCeEeCcCCcCc
Q 047977 511 SGNHFIGEISP--DWGECRNLSNLQLDRNKISGGIPA----ELGNLTRLGVLSLDSNELT 564 (569)
Q Consensus 511 ~~~~~~~~~~~--~l~~~~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~l~~n~~~ 564 (569)
++|.+. .+|. .++.+++|+.|++++|+++. .|. .+..+++|+.|++++|++.
T Consensus 96 ~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 96 TNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 888775 3444 67778888888888888773 444 3677888888888777653
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=4.4e-13 Score=114.81 Aligned_cols=105 Identities=18% Similarity=0.224 Sum_probs=57.2
Q ss_pred cEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCC
Q 047977 458 EELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRN 537 (569)
Q Consensus 458 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n 537 (569)
+.+++++++++ .+|..+. ++|++|++++|.+.+..+..|+.+++|++|++++|.+++..+..|+.+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 44555555554 4444332 55555555555555555555555555666666655555443334555556666666666
Q ss_pred cceecCCcCccCCCCCCeEeCcCCcCcc
Q 047977 538 KISGGIPAELGNLTRLGVLSLDSNELTG 565 (569)
Q Consensus 538 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 565 (569)
++++..+..+..+++|++|++++|++..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 5554444445556666666666665543
No 144
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.42 E-value=1.3e-10 Score=113.47 Aligned_cols=118 Identities=17% Similarity=0.176 Sum_probs=68.5
Q ss_pred CCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCc
Q 047977 432 SLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLS 511 (569)
Q Consensus 432 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 511 (569)
.|+.+.+..+ +.......+..+.+|+.+.+..+ +.......|.+|++|+.+++.++.+......+|.+|++|+.+++.
T Consensus 241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred cceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 5555555443 22122334455566666666543 332444566677777777776666665556667777777777775
Q ss_pred CCcccccCCcCcccCCCCCEEECCCCcceecCCcCccCCCCC
Q 047977 512 GNHFIGEISPDWGECRNLSNLQLDRNKISGGIPAELGNLTRL 553 (569)
Q Consensus 512 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L 553 (569)
.+ ++.....+|.+|++|+.+.+..+ ++.+...+|.+++.+
T Consensus 319 ~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 319 TA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp TT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred cc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 43 44344456777777777777544 555566666666433
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=4.4e-15 Score=130.80 Aligned_cols=132 Identities=20% Similarity=0.234 Sum_probs=87.0
Q ss_pred cccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCC
Q 047977 401 NISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSN 480 (569)
Q Consensus 401 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 480 (569)
.+..+++|+.|++++|.+++ +| .+..++ +|+.|++++|.+. .+|..+..+++|+.|++++|++++ ++ .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~-~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGME-NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHT-TCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCC-CCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 55566666666666666654 44 555554 7777777777665 455555556677777777777763 33 4667777
Q ss_pred CcEEEccCCccccchh-hhhcCCCCCcEEeCcCCcccccCCcC----------cccCCCCCEEECCCCcce
Q 047977 481 LNRVRFDGNQFTGNIT-RAFGVHPRLDFIRLSGNHFIGEISPD----------WGECRNLSNLQLDRNKIS 540 (569)
Q Consensus 481 L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~----------l~~~~~L~~L~l~~n~~~ 540 (569)
|++|++++|.+....+ ..+..+++|++|++++|++.+..|.. +..+++|+.|+ ++.++
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 7777777777765332 46777778888888888776554432 67777888776 55554
No 146
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.41 E-value=1.5e-10 Score=113.15 Aligned_cols=308 Identities=9% Similarity=0.041 Sum_probs=207.8
Q ss_pred ccccCCCCCCEEEcccCCCCcCCCcCCcCCCCCCEEEcccccceeccCccCcCCCCCCEEeCcCCcCccccCccccCCCC
Q 047977 207 SSLGQLKNLQHLDLRMNALNSTIPPELGLCTNLSFLALAMNQLSGGLPLSLSNLSRLNELGLSDNFLSGEISANLIGNWT 286 (569)
Q Consensus 207 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 286 (569)
.|+....+|+++.+.+ .++.+...+|.+|.+|+.+.+..+ ++.....+|.++ +|+.+.+..+ +. .+...++..+
T Consensus 40 ~~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~- 113 (379)
T 4h09_A 40 PWYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGT- 113 (379)
T ss_dssp TTGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTC-
T ss_pred cccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccC-
Confidence 4666778899999975 566677888999999999998754 565667777776 6777776543 22 4455556554
Q ss_pred CCcEEEccCCcceeeCCccccCCCCCcEEecccccccccCCccccCCCCCCEEEccCCcccc------------ccCccc
Q 047977 287 ELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNHFSGPIPSEIGKLTSLEKLDLSGNQLSG------------TIPPTL 354 (569)
Q Consensus 287 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~------------~~~~~~ 354 (569)
+|+.+.+.... ......+|..+ +++.+.+..+ ++......|..+..++.+.+....... .....+
T Consensus 114 ~L~~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (379)
T 4h09_A 114 DLDDFEFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESY 190 (379)
T ss_dssp CCSEEECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEEC
T ss_pred CcccccCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccc
Confidence 78999887643 33444555554 5777666553 333445677788888888876653321 112234
Q ss_pred ccCCCCCEEEcccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCchhhccCCCCc
Q 047977 355 WNLTNLLSLQLFFNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLI 434 (569)
Q Consensus 355 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~ 434 (569)
..+..+..+.+...... .....+..+..++.+.+..+ +.......+..+..|+.+.+..+ ++..-...+..+. .|+
T Consensus 191 ~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~-~l~ 266 (379)
T 4h09_A 191 PAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCT-ALK 266 (379)
T ss_dssp CTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCT-TCC
T ss_pred cccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceee-hhc
Confidence 45566666666554332 44556677788888888654 33234456778888999888765 4434445555555 888
Q ss_pred eEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCCc
Q 047977 435 NVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGNH 514 (569)
Q Consensus 435 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 514 (569)
.+.+... +.......+..|.+|+.+.+.++.+......+|.+|.+|+.++|..+ +......+|.+|++|+++.+..+
T Consensus 267 ~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~- 343 (379)
T 4h09_A 267 TLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS- 343 (379)
T ss_dssp EEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-
T ss_pred ccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-
Confidence 8888654 33233446677889999999888887666788999999999999754 66566788999999999988654
Q ss_pred ccccCCcCcccCCCCC
Q 047977 515 FIGEISPDWGECRNLS 530 (569)
Q Consensus 515 ~~~~~~~~l~~~~~L~ 530 (569)
++.....+|.++..++
T Consensus 344 v~~I~~~aF~~c~~~~ 359 (379)
T 4h09_A 344 ITLIESGAFEGSSITK 359 (379)
T ss_dssp CCEECTTTTTTSSCCC
T ss_pred cCEEchhHhhCCCCCc
Confidence 5545566788775443
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.37 E-value=2.5e-14 Score=138.31 Aligned_cols=160 Identities=13% Similarity=0.102 Sum_probs=86.2
Q ss_pred CCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhh-----hCCCCCcEEEccCCcceee----CCcccc
Q 047977 406 VNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYEL-----CSGFALEELTVNGNNFTGS----LPACMR 476 (569)
Q Consensus 406 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~----~~~~l~ 476 (569)
.+|+.|++++|.++......+....++|+.|++++|.+++.....+ ...++|++|++++|.++.. +...+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 3444455555444322222222211256666666666654332222 1345677777777766532 223345
Q ss_pred CCCCCcEEEccCCccccc----hhhhhcCCCCCcEEeCcCCccccc----CCcCcccCCCCCEEECCCCcceecCCcCcc
Q 047977 477 NCSNLNRVRFDGNQFTGN----ITRAFGVHPRLDFIRLSGNHFIGE----ISPDWGECRNLSNLQLDRNKISGGIPAELG 548 (569)
Q Consensus 477 ~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~ 548 (569)
.+++|++|+|++|.+... +...+..+++|++|++++|.+++. +...+..+++|+.|++++|.++......+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 667777777777777543 245566677777777777777643 223345567778888888777754444443
Q ss_pred CC---C--CCCeEe--CcCCcCcc
Q 047977 549 NL---T--RLGVLS--LDSNELTG 565 (569)
Q Consensus 549 ~l---~--~L~~L~--l~~n~~~~ 565 (569)
.+ . .|+.+. +.+|.++.
T Consensus 261 ~~~~~~~~~L~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 261 DLGGAAEGGARVVVSLTEGTAVSE 284 (372)
T ss_dssp HCC------CEEECCCC----CHH
T ss_pred HHhcCCCccchhhHhhhcCCccCH
Confidence 32 1 156666 66665543
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.36 E-value=3e-12 Score=109.23 Aligned_cols=103 Identities=16% Similarity=0.179 Sum_probs=47.9
Q ss_pred CEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccC
Q 047977 409 NKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDG 488 (569)
Q Consensus 409 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 488 (569)
+.++++++.++. +|..+. +.++.|++++|.+.+..+..+..+++|++|++++|+++...+..|.++++|++|++++
T Consensus 12 ~~l~~s~n~l~~-ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCSS-CCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 445555555442 333221 2455555555555443344444445555555555554433333344445555555555
Q ss_pred CccccchhhhhcCCCCCcEEeCcCCcc
Q 047977 489 NQFTGNITRAFGVHPRLDFIRLSGNHF 515 (569)
Q Consensus 489 ~~~~~~~~~~l~~l~~L~~L~l~~~~~ 515 (569)
|.+.+..+..|+.+++|++|++++|++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 555444444444455555555555544
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.36 E-value=7.4e-14 Score=135.04 Aligned_cols=162 Identities=14% Similarity=0.123 Sum_probs=120.5
Q ss_pred CCCCCEEEccCCcccccCCchhhcc----CCCCceEEcccCcCccccChhhh-CCCCCcEEEccCCcceeeCCccc----
Q 047977 405 LVNLNKFSVFTNNFSGSIPGDFGKF----SPSLINVSFSNNSFSGELPYELC-SGFALEELTVNGNNFTGSLPACM---- 475 (569)
Q Consensus 405 l~~L~~l~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l---- 475 (569)
++.++.+++++|.++......+... +++|+.|++++|.+++.....+. .+.+|+.|++++|.+++.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3567777777777664333333322 24999999999998754433333 35689999999999875433333
Q ss_pred -cCCCCCcEEEccCCccccc----hhhhhcCCCCCcEEeCcCCcccccC----CcCcccCCCCCEEECCCCcceecC---
Q 047977 476 -RNCSNLNRVRFDGNQFTGN----ITRAFGVHPRLDFIRLSGNHFIGEI----SPDWGECRNLSNLQLDRNKISGGI--- 543 (569)
Q Consensus 476 -~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~n~~~~~~--- 543 (569)
...++|++|+|++|.++.. +...+..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 3578999999999999753 4455678999999999999987543 456788899999999999998643
Q ss_pred -CcCccCCCCCCeEeCcCCcCccc
Q 047977 544 -PAELGNLTRLGVLSLDSNELTGK 566 (569)
Q Consensus 544 -~~~l~~l~~L~~L~l~~n~~~~~ 566 (569)
+.++..+++|++|++++|+|++.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHH
Confidence 34455679999999999999753
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.33 E-value=5e-12 Score=108.17 Aligned_cols=104 Identities=17% Similarity=0.193 Sum_probs=50.5
Q ss_pred CEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccC
Q 047977 409 NKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDG 488 (569)
Q Consensus 409 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 488 (569)
+.++++++.+. .+|..+. ++|+.|++++|.+.+..+..+..+++|+.|++++|+++...+..|.++++|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 44555555543 3333322 2555555555555544444444555555555555555532223344555555555555
Q ss_pred CccccchhhhhcCCCCCcEEeCcCCccc
Q 047977 489 NQFTGNITRAFGVHPRLDFIRLSGNHFI 516 (569)
Q Consensus 489 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 516 (569)
|.+.+..+..|+.+++|++|++++|++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 5555444444555555555555555543
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.19 E-value=6.1e-11 Score=114.45 Aligned_cols=102 Identities=19% Similarity=0.156 Sum_probs=51.0
Q ss_pred EEcccC-cCccccChhhhCCCCCcEEEccC-CcceeeCCccccCCCCCcEEEccCCccccchhhhhcCCCCCcEEeCcCC
Q 047977 436 VSFSNN-SFSGELPYELCSGFALEELTVNG-NNFTGSLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHPRLDFIRLSGN 513 (569)
Q Consensus 436 L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 513 (569)
++++++ .+. .+|. +..+++|+.|+|++ |.+....+..|.++++|+.|+|++|.+++..+..|+.+++|++|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 445544 444 3444 44455555555553 5555433344555555555555555555555555555555555555555
Q ss_pred cccccCCcCcccCCCCCEEECCCCcce
Q 047977 514 HFIGEISPDWGECRNLSNLQLDRNKIS 540 (569)
Q Consensus 514 ~~~~~~~~~l~~~~~L~~L~l~~n~~~ 540 (569)
.+.+..+..|..++ |+.|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 55433333344333 555555555444
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.07 E-value=4.8e-10 Score=108.10 Aligned_cols=102 Identities=16% Similarity=0.120 Sum_probs=56.2
Q ss_pred EEccCC-cccccCCchhhccCCCCceEEccc-CcCccccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccC
Q 047977 411 FSVFTN-NFSGSIPGDFGKFSPSLINVSFSN-NSFSGELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDG 488 (569)
Q Consensus 411 l~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 488 (569)
++.+++ .++ .+|. +..+. +|+.|+|++ |.+.+..+..+..+++|+.|+|++|++++..+..|.++++|++|+|++
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~-~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCC-ccCC-CCCCC-CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 444444 444 2444 44443 566666664 555544444555566666666666666655555556666666666666
Q ss_pred CccccchhhhhcCCCCCcEEeCcCCccc
Q 047977 489 NQFTGNITRAFGVHPRLDFIRLSGNHFI 516 (569)
Q Consensus 489 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 516 (569)
|.+++..+..+..++ |++|++.+|++.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 666554444444444 666666666554
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.94 E-value=5.3e-10 Score=106.96 Aligned_cols=156 Identities=15% Similarity=0.204 Sum_probs=93.2
Q ss_pred cccCCCCCCEEEccCCcccccCCchhhccCCCCceEEcccCcCccccChhhh--CCCCCcEEEccCC--cc-ee----eC
Q 047977 401 NISRLVNLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPYELC--SGFALEELTVNGN--NF-TG----SL 471 (569)
Q Consensus 401 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~--~~-~~----~~ 471 (569)
.+..+++|+.|.+.++.-. ..+. + .. ++|+.|++..|.+.+.....+. .+++|+.|+|+.+ .. .. .+
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~-~~-~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-K-PR-PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-C-BC-TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-c-cC-CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 3455666666666655211 1121 1 22 3777887777776544333443 5778888877531 11 10 11
Q ss_pred Cccc--cCCCCCcEEEccCCccccchhhhh---cCCCCCcEEeCcCCccccc----CCcCcccCCCCCEEECCCCcceec
Q 047977 472 PACM--RNCSNLNRVRFDGNQFTGNITRAF---GVHPRLDFIRLSGNHFIGE----ISPDWGECRNLSNLQLDRNKISGG 542 (569)
Q Consensus 472 ~~~l--~~~~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~ 542 (569)
...+ ..+|+|+.|++++|.+....+..+ ..+++|++|+++.|.+.+. ++..++.+++|+.|++++|.++..
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 1122 357888888888888765433333 3578888888888887653 334456678888888888887754
Q ss_pred CCcCccC-CCCCCeEeCcCCc
Q 047977 543 IPAELGN-LTRLGVLSLDSNE 562 (569)
Q Consensus 543 ~~~~l~~-l~~L~~L~l~~n~ 562 (569)
....+.. + ..++++++++
T Consensus 323 ~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 323 MKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHHc--CCEEEecCCc
Confidence 4444443 3 4557777765
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.91 E-value=5.8e-10 Score=106.73 Aligned_cols=137 Identities=11% Similarity=0.176 Sum_probs=96.3
Q ss_pred hhccCCCCceEEcccCcCccccChhhhCCCCCcEEEccCCcceeeCCcccc--CCCCCcEEEccCC--cc-cc----chh
Q 047977 426 FGKFSPSLINVSFSNNSFSGELPYELCSGFALEELTVNGNNFTGSLPACMR--NCSNLNRVRFDGN--QF-TG----NIT 496 (569)
Q Consensus 426 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~--~~-~~----~~~ 496 (569)
+..+ |+|+.|.+++|.-. .++. + ..++|+.|++..|.++......+. .+|+|++|+|+.+ .. .. .+.
T Consensus 168 l~~~-P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 168 LDAM-PLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHTC-TTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HhcC-CCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 3344 49999999988311 2232 2 378999999999987644333343 7899999999642 11 11 111
Q ss_pred hhh--cCCCCCcEEeCcCCcccccCCcCc---ccCCCCCEEECCCCcceecC----CcCccCCCCCCeEeCcCCcCccc
Q 047977 497 RAF--GVHPRLDFIRLSGNHFIGEISPDW---GECRNLSNLQLDRNKISGGI----PAELGNLTRLGVLSLDSNELTGK 566 (569)
Q Consensus 497 ~~l--~~l~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~n~~~~~~----~~~l~~l~~L~~L~l~~n~~~~~ 566 (569)
..+ ..+|+|++|++++|.+.+..+..+ ..+++|+.|+++.|.+.+.. +.++..+++|+.|++++|.++.+
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 223 358999999999999875443333 35789999999999998643 44556789999999999998753
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.77 E-value=1.4e-09 Score=93.92 Aligned_cols=114 Identities=13% Similarity=0.193 Sum_probs=57.9
Q ss_pred hhCCCCCcEEEccCC-cceee----CCccccCCCCCcEEEccCCccccc----hhhhhcCCCCCcEEeCcCCccccc---
Q 047977 451 LCSGFALEELTVNGN-NFTGS----LPACMRNCSNLNRVRFDGNQFTGN----ITRAFGVHPRLDFIRLSGNHFIGE--- 518 (569)
Q Consensus 451 ~~~~~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~--- 518 (569)
+...++|++|++++| .+... +...+...++|++|+|++|.+... +...+...++|++|++++|.+.+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 334455555555555 44321 122344455566666666655432 223344455666666666665432
Q ss_pred -CCcCcccCCCCCEEEC--CCCcceecC----CcCccCCCCCCeEeCcCCcCc
Q 047977 519 -ISPDWGECRNLSNLQL--DRNKISGGI----PAELGNLTRLGVLSLDSNELT 564 (569)
Q Consensus 519 -~~~~l~~~~~L~~L~l--~~n~~~~~~----~~~l~~l~~L~~L~l~~n~~~ 564 (569)
+...+...++|++|++ ++|.+.... ...+...++|++|++++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2334555566666666 556655322 233344456666666666553
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.61 E-value=7.7e-09 Score=86.41 Aligned_cols=87 Identities=8% Similarity=0.045 Sum_probs=68.3
Q ss_pred CCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCc-cccchhhhhcCC----CCCcEEeCcCCc-ccccCCcCcccCC
Q 047977 454 GFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQ-FTGNITRAFGVH----PRLDFIRLSGNH-FIGEISPDWGECR 527 (569)
Q Consensus 454 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~l----~~L~~L~l~~~~-~~~~~~~~l~~~~ 527 (569)
...|++|++++|.+++.-...+.+|++|++|+|++|. +++.....+..+ ++|++|++++|. +++.....+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3578999999998876666677889999999999985 676666666664 579999999985 7766556678889
Q ss_pred CCCEEECCCCc-ce
Q 047977 528 NLSNLQLDRNK-IS 540 (569)
Q Consensus 528 ~L~~L~l~~n~-~~ 540 (569)
+|+.|++++|. ++
T Consensus 140 ~L~~L~L~~c~~It 153 (176)
T 3e4g_A 140 NLKYLFLSDLPGVK 153 (176)
T ss_dssp TCCEEEEESCTTCC
T ss_pred CCCEEECCCCCCCC
Confidence 99999999885 55
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.61 E-value=1.6e-08 Score=87.21 Aligned_cols=109 Identities=13% Similarity=0.182 Sum_probs=67.1
Q ss_pred CCceEEcccC-cCccc----cChhhhCCCCCcEEEccCCcceee----CCccccCCCCCcEEEccCCccccc----hhhh
Q 047977 432 SLINVSFSNN-SFSGE----LPYELCSGFALEELTVNGNNFTGS----LPACMRNCSNLNRVRFDGNQFTGN----ITRA 498 (569)
Q Consensus 432 ~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~ 498 (569)
.|++|++++| .+.+. +...+...++|++|++++|.+.+. +...+...++|++|+|++|.+... +..+
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~ 116 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA 116 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence 5666666666 55432 223344456677777777766532 223445556777777777777643 3455
Q ss_pred hcCCCCCcEEeC--cCCccccc----CCcCcccCCCCCEEECCCCcce
Q 047977 499 FGVHPRLDFIRL--SGNHFIGE----ISPDWGECRNLSNLQLDRNKIS 540 (569)
Q Consensus 499 l~~l~~L~~L~l--~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~ 540 (569)
+...++|++|++ ++|.+.+. +...+..+++|++|++++|.+.
T Consensus 117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 666777888888 66776543 2334566677888888877765
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.57 E-value=1.9e-08 Score=84.09 Aligned_cols=83 Identities=7% Similarity=-0.018 Sum_probs=65.7
Q ss_pred CCceEEcccCcCccccChhhhCCCCCcEEEccCCc-ceeeCCccccCC----CCCcEEEccCCc-cccchhhhhcCCCCC
Q 047977 432 SLINVSFSNNSFSGELPYELCSGFALEELTVNGNN-FTGSLPACMRNC----SNLNRVRFDGNQ-FTGNITRAFGVHPRL 505 (569)
Q Consensus 432 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~----~~L~~L~l~~~~-~~~~~~~~l~~l~~L 505 (569)
.|+.|++++|.+++.....+..+++|++|++++|. +++.-...+..+ ++|++|+|++|. +++.....+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 78899999998887766777888999999999984 665444455553 479999999885 777666778888999
Q ss_pred cEEeCcCCc
Q 047977 506 DFIRLSGNH 514 (569)
Q Consensus 506 ~~L~l~~~~ 514 (569)
++|++++|+
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 999999986
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.30 E-value=1.5e-07 Score=85.07 Aligned_cols=80 Identities=21% Similarity=0.334 Sum_probs=63.8
Q ss_pred cCCCCCcEEEccCCcccc--chhhhhcCCCCCcEEeCcCCcccccCCcCcccCC--CCCEEECCCCcceecCCc------
Q 047977 476 RNCSNLNRVRFDGNQFTG--NITRAFGVHPRLDFIRLSGNHFIGEISPDWGECR--NLSNLQLDRNKISGGIPA------ 545 (569)
Q Consensus 476 ~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~n~~~~~~~~------ 545 (569)
.++++|+.|+|++|.+++ .++..++.+++|+.|+|++|.+.+. ..+..+. +|++|++++|++.+..|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 578999999999999987 4456778899999999999998755 3344444 899999999999865552
Q ss_pred -CccCCCCCCeEe
Q 047977 546 -ELGNLTRLGVLS 557 (569)
Q Consensus 546 -~l~~l~~L~~L~ 557 (569)
.+..+|+|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 367789999876
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.24 E-value=6.5e-07 Score=80.93 Aligned_cols=80 Identities=18% Similarity=0.259 Sum_probs=60.8
Q ss_pred hCCCCCcEEEccCCccee--eCCccccCCCCCcEEEccCCccccchhhhhcCCC--CCcEEeCcCCcccccCCc------
Q 047977 452 CSGFALEELTVNGNNFTG--SLPACMRNCSNLNRVRFDGNQFTGNITRAFGVHP--RLDFIRLSGNHFIGEISP------ 521 (569)
Q Consensus 452 ~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~------ 521 (569)
..+++|++|+|++|++++ .++..+..+++|+.|+|++|.+.+. ..+..+. +|++|++++|++.+..|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 457889999999999885 3445667889999999999998864 2233334 899999999998765542
Q ss_pred -CcccCCCCCEEE
Q 047977 522 -DWGECRNLSNLQ 533 (569)
Q Consensus 522 -~l~~~~~L~~L~ 533 (569)
.+..+|+|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 367888998886
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.72 E-value=2e-05 Score=67.15 Aligned_cols=107 Identities=15% Similarity=0.179 Sum_probs=46.6
Q ss_pred CCceEEcccC-cCccc----cChhhhCCCCCcEEEccCCcceeeC----CccccCCCCCcEEEccCCccccc----hhhh
Q 047977 432 SLINVSFSNN-SFSGE----LPYELCSGFALEELTVNGNNFTGSL----PACMRNCSNLNRVRFDGNQFTGN----ITRA 498 (569)
Q Consensus 432 ~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~----~~~~ 498 (569)
.|+.|+++++ .+.+. +...+.....|+.|+|++|.+.+.- .+.+..-+.|++|+|++|.+... +.++
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a 121 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence 4555555543 44322 2223333445555555555554321 12233334555555555555432 2233
Q ss_pred hcCCCCCcEEeCcCCc---ccc----cCCcCcccCCCCCEEECCCCc
Q 047977 499 FGVHPRLDFIRLSGNH---FIG----EISPDWGECRNLSNLQLDRNK 538 (569)
Q Consensus 499 l~~l~~L~~L~l~~~~---~~~----~~~~~l~~~~~L~~L~l~~n~ 538 (569)
+...+.|++|++++|. +.. .+.+.+...+.|+.|+++.|.
T Consensus 122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 4444555555555431 111 122234445555555555443
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.67 E-value=1.5e-05 Score=67.81 Aligned_cols=115 Identities=10% Similarity=0.170 Sum_probs=86.6
Q ss_pred hhhhCCCCCcEEEccCC-cceee----CCccccCCCCCcEEEccCCcccc----chhhhhcCCCCCcEEeCcCCccccc-
Q 047977 449 YELCSGFALEELTVNGN-NFTGS----LPACMRNCSNLNRVRFDGNQFTG----NITRAFGVHPRLDFIRLSGNHFIGE- 518 (569)
Q Consensus 449 ~~~~~~~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~- 518 (569)
..+..-+.|++|+++++ .+.+. +.+.+..-+.|++|+|++|.+.. .+.+.+...+.|++|+|++|.+.+.
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 34455678999999986 77542 33556677899999999999975 3445566889999999999999754
Q ss_pred ---CCcCcccCCCCCEEECCCCc---cee----cCCcCccCCCCCCeEeCcCCcC
Q 047977 519 ---ISPDWGECRNLSNLQLDRNK---ISG----GIPAELGNLTRLGVLSLDSNEL 563 (569)
Q Consensus 519 ---~~~~l~~~~~L~~L~l~~n~---~~~----~~~~~l~~l~~L~~L~l~~n~~ 563 (569)
+.+.+...+.|++|++++|. +.. .+..++..-++|++|+++.|.+
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 33447888999999998764 342 2345567788999999987764
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.02 E-value=0.0012 Score=52.51 Aligned_cols=55 Identities=16% Similarity=0.101 Sum_probs=27.7
Q ss_pred EEEccCCccc-cchhhhhcCCCCCcEEeCcCCcccccCCcCcccCCCCCEEECCCCcc
Q 047977 483 RVRFDGNQFT-GNITRAFGVHPRLDFIRLSGNHFIGEISPDWGECRNLSNLQLDRNKI 539 (569)
Q Consensus 483 ~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~ 539 (569)
.++.+++.++ ..+|.. -.++|++|+|++|.++...+..|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSC--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCC--CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555555554 123322 223556666666665544444455555566665555544
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.27 E-value=0.0065 Score=48.10 Aligned_cols=55 Identities=22% Similarity=0.370 Sum_probs=26.4
Q ss_pred eEEcccCcCc-cccChhhhCCCCCcEEEccCCcceeeCCccccCCCCCcEEEccCCcc
Q 047977 435 NVSFSNNSFS-GELPYELCSGFALEELTVNGNNFTGSLPACMRNCSNLNRVRFDGNQF 491 (569)
Q Consensus 435 ~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 491 (569)
.++.++..++ ..+|..+ ..+++.|+|++|+++...+..|..+++|+.|+|++|++
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4455555443 1333222 12455555555555533334455555555555555544
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=91.04 E-value=0.28 Score=36.37 Aligned_cols=50 Identities=8% Similarity=0.024 Sum_probs=36.8
Q ss_pred CCCCCcccCCcCccCCCCCCEEeCCCCcCcccCCccccCCCCCcEEEccCC
Q 047977 4 SHNNISGPIPPAIGTLSNLTFLDLNNNLFEGSIPSEMGDLSELQYLSVYNN 54 (569)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 54 (569)
.|-.++.+-..+|..|..|+.+.+..+ ++.+...+|.+|.+|+.+.+...
T Consensus 4 ~g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 4 EGEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 355677777888888888888888775 44466777888888888887653
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=84.74 E-value=1.8 Score=31.87 Aligned_cols=49 Identities=16% Similarity=0.109 Sum_probs=30.0
Q ss_pred CCcCcccCCccccCCCCCcEEEccCCccccCcchhccCCCCCCEEECCCC
Q 047977 29 NNLFEGSIPSEMGDLSELQYLSVYNNSLNGAFPFQLSNLRKVRYLDLGGN 78 (569)
Q Consensus 29 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 78 (569)
+.+++.+...+|.+|.+|+.+.+..+ ++.+-..+|.+|.+|+.+.+.+.
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34455556667777777777777653 44344556667777776666543
Done!