BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047980
(718 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FT2|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4FT2|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4FT4|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
pdb|4FT4|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
Length = 784
Score = 555 bits (1431), Expect = e-158, Method: Compositional matrix adjust.
Identities = 297/591 (50%), Positives = 362/591 (61%), Gaps = 32/591 (5%)
Query: 128 DDEPEARFLGDPVPDGEARQRWPKRYEVXXXXXXXXXXXXEEEIIQAKCHYMWAEVDGHI 187
D EPE F+G PV EAR WPKRY EEE ++A+CHY A+VD ++
Sbjct: 4 DHEPE--FIGSPVAADEARSNWPKRY----GRSTAAKKPDEEEELKARCHYRSAKVD-NV 56
Query: 188 TYDLFDDAHVKAESGEEDYICKIVEMFEAVDGTPYFTAQWYYRARDTVIES------NAH 241
Y L DD +VKA E DYI +I E FE D YFT +W++RA DTVI S + H
Sbjct: 57 VYCLGDDVYVKAGENEADYIGRITEFFEGTDQCHYFTCRWFFRAEDTVINSLVSISVDGH 116
Query: 242 LIDQRRVFFSEIQNDNPLECLVKKLNIARVPLNIDLEAKKLAIPHCDYYCDMMYLLPYST 301
D RRVF SE +NDN L+C++ K+ I V N+D +AK I CD Y DM Y + YST
Sbjct: 117 KHDPRRVFLSEEKNDNVLDCIISKVKIVHVDPNMDPKAKAQLIESCDLYYDMSYSVAYST 176
Query: 302 FFSLPPENKRVXXXXXXXXXXDVDANECEVGEPQKMDVKLLDLYSGCGAMSTXXXXXXXX 361
F ++ EN + D E P + LLDLYSGCG MST
Sbjct: 177 FANISSENGQSGSDTASGISSDDVDLETSSSMPTRT-ATLLDLYSGCGGMSTGLCLGAAL 235
Query: 362 XXXXXVTRWAVDINEYACQSLKLNHPETEVRNESAEDFLTLLREWEKLCISFSLIARKDP 421
TRWAVD N +ACQSLK NHP+TEVRNE A++FL LL+EW LC + +D
Sbjct: 236 SGLKLETRWAVDFNSFACQSLKYNHPQTEVRNEKADEFLALLKEWAVLCKKYV----QDV 291
Query: 422 QQQLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKILKICYGDPKEIKKRGLYLKVRW 481
L K++ ICYG ++ G+Y KV+W
Sbjct: 292 DSNL-----------ASSEDQADEDSPLDKDEFVVEKLVGICYGGSD--RENGIYFKVQW 338
Query: 482 RNYGPSEDTWEPIEGLSNCGEKIKEFVTHGFKSKILPLPGDVDVICGGPPCQGVSGFNRF 541
YGP EDTWEPI+ LS+C +KI+EFV G K KILPLPGDVDVICGGPPCQG+SGFNR+
Sbjct: 339 EGYGPEEDTWEPIDNLSDCPQKIREFVQEGHKRKILPLPGDVDVICGGPPCQGISGFNRY 398
Query: 542 RNKDNPLADEKNKQLIVFMDIVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQ 601
RN+D PL DEKNKQ++ FMDIV +LKPK+VLMENVVDI+KFA G LG+YAL+ L+ M YQ
Sbjct: 399 RNRDEPLKDEKNKQMVTFMDIVAYLKPKYVLMENVVDILKFADGYLGKYALSCLVAMKYQ 458
Query: 602 VRMGMMAAGAYGLPQFRMRVFLWGAQPTEKLPPYALPTHDVVLRGVIPTEFERNTVAYDE 661
R+GMM AG YGLPQFRMRVFLWGA + LP Y LPT+DVV+RG P F + VAYDE
Sbjct: 459 ARLGMMVAGCYGLPQFRMRVFLWGALSSMVLPKYPLPTYDVVVRGGAPNAFSQCMVAYDE 518
Query: 662 GQQAELARKLLLQDAISDLPSVDNYESRDEIPYDREPETEFQCFIRL-RKD 711
Q+ L + LLL DAISDLP V N++ D + Y P+TEFQ +IRL RKD
Sbjct: 519 TQKPSLKKALLLGDAISDLPKVQNHQPNDVMEYGGSPKTEFQRYIRLSRKD 569
>pdb|4FSX|A Chain A, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In
Complex With Sah
pdb|4FSX|B Chain B, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In
Complex With Sah
Length = 784
Score = 532 bits (1371), Expect = e-151, Method: Compositional matrix adjust.
Identities = 289/591 (48%), Positives = 351/591 (59%), Gaps = 32/591 (5%)
Query: 128 DDEPEARFLGDPVPDGEARQRWPKRYEVXXXXXXXXXXXXEEEIIQAKCHYMWAEVDGHI 187
D EPE F+G PV EAR WPKRY EEE ++A+CHY A+VD ++
Sbjct: 4 DHEPE--FIGSPVAADEARSNWPKRY----GRSTAAKKPDEEEELKARCHYRSAKVD-NV 56
Query: 188 TYDLFDDAHVKAESGEEDYICKIVEMFEAVDGTPYFTAQWYYRARDTVIES------NAH 241
Y L DD +VKA E DYI +I E FE D YFT +W++RA DTVI S + H
Sbjct: 57 VYCLGDDVYVKAGENEADYIGRITEFFEGTDQCHYFTCRWFFRAEDTVINSLVSISVDGH 116
Query: 242 LIDQRRVFFSEIQNDNPLECLVKKLNIARVPLNIDLEAKKLAIPHCDYYCDMMYLLPYST 301
D RRVF SE +NDN L+C++ K+ I V N D +AK I CD Y D Y + YST
Sbjct: 117 KHDPRRVFLSEEKNDNVLDCIISKVKIVHVDPNXDPKAKAQLIESCDLYYDXSYSVAYST 176
Query: 302 FFSLPPENKRVXXXXXXXXXXDVDANECEVGEPQKMDVKLLDLYSGCGAMSTXXXXXXXX 361
F ++ EN + D E P + LLDLYSGCG ST
Sbjct: 177 FANISSENGQSGSDTASGISSDDVDLETSSSXPTRT-ATLLDLYSGCGGXSTGLCLGAAL 235
Query: 362 XXXXXVTRWAVDINEYACQSLKLNHPETEVRNESAEDFLTLLREWEKLCISFSLIARKDP 421
TRWAVD N +ACQSLK NHP+TEVRNE A++FL LL+EW LC + +D
Sbjct: 236 SGLKLETRWAVDFNSFACQSLKYNHPQTEVRNEKADEFLALLKEWAVLCKKYV----QDV 291
Query: 422 QQQLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKILKICYGDPKEIKKRGLYLKVRW 481
L K++ ICYG ++ G+Y KV+W
Sbjct: 292 DSNL-----------ASSEDQADEDSPLDKDEFVVEKLVGICYGGSD--RENGIYFKVQW 338
Query: 482 RNYGPSEDTWEPIEGLSNCGEKIKEFVTHGFKSKILPLPGDVDVICGGPPCQGVSGFNRF 541
YGP EDTWEPI+ LS+C +KI+EFV G K KILPLPGDVDVICGGPPCQG+SGFNR+
Sbjct: 339 EGYGPEEDTWEPIDNLSDCPQKIREFVQEGHKRKILPLPGDVDVICGGPPCQGISGFNRY 398
Query: 542 RNKDNPLADEKNKQLIVFMDIVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQ 601
RN+D PL DEKNKQ + F DIV +LKPK+VL ENVVDI+KFA G LG+YAL+ L+ YQ
Sbjct: 399 RNRDEPLKDEKNKQXVTFXDIVAYLKPKYVLXENVVDILKFADGYLGKYALSCLVAXKYQ 458
Query: 602 VRMGMMAAGAYGLPQFRMRVFLWGAQPTEKLPPYALPTHDVVLRGVIPTEFERNTVAYDE 661
R+G AG YGLPQFR RVFLWGA + LP Y LPT+DVV+RG P F + VAYDE
Sbjct: 459 ARLGXXVAGCYGLPQFRXRVFLWGALSSXVLPKYPLPTYDVVVRGGAPNAFSQCXVAYDE 518
Query: 662 GQQAELARKLLLQDAISDLPSVDNYESRDEIPYDREPETEFQCFIRL-RKD 711
Q+ L + LLL DAISDLP V N++ D Y P+TEFQ +IRL RKD
Sbjct: 519 TQKPSLKKALLLGDAISDLPKVQNHQPNDVXEYGGSPKTEFQRYIRLSRKD 569
>pdb|3AV4|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1
pdb|3AV5|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adohcy
pdb|3AV6|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adomet
Length = 1330
Score = 135 bits (341), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 107/197 (54%), Gaps = 12/197 (6%)
Query: 517 LPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLKPKFVLMENV 576
LP GDV+++CGGPPCQG SG NRF ++ + KN ++ F+ D+ +P+F L+ENV
Sbjct: 924 LPQKGDVEMLCGGPPCQGFSGMNRFNSRT--YSKFKNSLVVSFLSYCDYYRPRFFLLENV 981
Query: 577 VDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFRMRVFLWGAQPTEKLPPYA 636
+ V + + ++ + L L++M YQ G++ AG YG+ Q R R + A P EKLP +
Sbjct: 982 RNFVSYRRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFP 1041
Query: 637 LPTHDVVLRG------VIPTEFERNTVAYDEGQQAELARKLLLQDAISDLPSVDNYESRD 690
P H R V +F N G R + ++D +SDLP + N S
Sbjct: 1042 EPLHVFAPRACQLSVVVDDKKFVSNITRLSSGP----FRTITVRDTMSDLPEIQNGASNS 1097
Query: 691 EIPYDREPETEFQCFIR 707
EIPY+ EP + FQ +R
Sbjct: 1098 EIPYNGEPLSWFQRQLR 1114
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 339 VKLLDLYSGCGAMSTXXXXXXXXXXXXXVTRWAVDINEYACQSLKLNHPETEVRNESAED 398
++ LD++SGCG +S T WA+++ + A Q+ +LN+P T V E
Sbjct: 852 LRTLDVFSGCGGLSEGFHQAGISE-----TLWAIEMWDPAAQAFRLNNPGTTVFTEDCNV 906
Query: 399 FLTLLREWE 407
L L+ E
Sbjct: 907 LLKLVMAGE 915
>pdb|3PT6|A Chain A, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
pdb|3PT6|B Chain B, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
Length = 954
Score = 135 bits (340), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 107/197 (54%), Gaps = 12/197 (6%)
Query: 517 LPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLKPKFVLMENV 576
LP GDV+++CGGPPCQG SG NRF ++ + KN ++ F+ D+ +P+F L+ENV
Sbjct: 566 LPQKGDVEMLCGGPPCQGFSGMNRFNSRT--YSKFKNSLVVSFLSYCDYYRPRFFLLENV 623
Query: 577 VDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFRMRVFLWGAQPTEKLPPYA 636
+ V + + ++ + L L++M YQ G++ AG YG+ Q R R + A P EKLP +
Sbjct: 624 RNFVSYRRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFP 683
Query: 637 LPTHDVVLRG------VIPTEFERNTVAYDEGQQAELARKLLLQDAISDLPSVDNYESRD 690
P H R V +F N G R + ++D +SDLP + N S
Sbjct: 684 EPLHVFAPRACQLSVVVDDKKFVSNITRLSSGP----FRTITVRDTMSDLPEIQNGASNS 739
Query: 691 EIPYDREPETEFQCFIR 707
EIPY+ EP + FQ +R
Sbjct: 740 EIPYNGEPLSWFQRQLR 756
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 339 VKLLDLYSGCGAMSTXXXXXXXXXXXXXVTRWAVDINEYACQSLKLNHPETEVRNESAED 398
++ LD++SGCG +S T WA+++ + A Q+ +LN+P T V E
Sbjct: 494 LRTLDVFSGCGGLSEGFHQAGISE-----TLWAIEMWDPAAQAFRLNNPGTTVFTEDCNV 548
Query: 399 FLTLLREWE 407
L L+ E
Sbjct: 549 LLKLVMAGE 557
>pdb|3PT9|A Chain A, Crystal Structure Of Mouse Dnmt1(731-1602) In The Free
State
pdb|4DA4|A Chain A, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
pdb|4DA4|B Chain B, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
Length = 873
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 107/197 (54%), Gaps = 12/197 (6%)
Query: 517 LPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLKPKFVLMENV 576
LP GDV+++CGGPPCQG SG NRF ++ + KN ++ F+ D+ +P+F L+ENV
Sbjct: 485 LPQKGDVEMLCGGPPCQGFSGMNRFNSRT--YSKFKNSLVVSFLSYCDYYRPRFFLLENV 542
Query: 577 VDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFRMRVFLWGAQPTEKLPPYA 636
+ V + + ++ + L L++M YQ G++ AG YG+ Q R R + A P EKLP +
Sbjct: 543 RNFVSYRRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFP 602
Query: 637 LPTHDVVLRG------VIPTEFERNTVAYDEGQQAELARKLLLQDAISDLPSVDNYESRD 690
P H R V +F N G R + ++D +SDLP + N S
Sbjct: 603 EPLHVFAPRACQLSVVVDDKKFVSNITRLSSGP----FRTITVRDTMSDLPEIQNGASNS 658
Query: 691 EIPYDREPETEFQCFIR 707
EIPY+ EP + FQ +R
Sbjct: 659 EIPYNGEPLSWFQRQLR 675
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 339 VKLLDLYSGCGAMSTXXXXXXXXXXXXXVTRWAVDINEYACQSLKLNHPETEVRNESAED 398
++ LD++SGCG +S T WA+++ + A Q+ +LN+P T V E
Sbjct: 413 LRTLDVFSGCGGLSEGFHQAGISE-----TLWAIEMWDPAAQAFRLNNPGTTVFTEDCNV 467
Query: 399 FLTLLREWE 407
L L+ E
Sbjct: 468 LLKLVMAGE 476
>pdb|3SWR|A Chain A, Structure Of Human Dnmt1 (601-1600) In Complex With
Sinefungin
Length = 1002
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 110/205 (53%), Gaps = 12/205 (5%)
Query: 509 THGFKSKILPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLKP 568
T + + LP GDV+++CGGPPCQG SG NRF ++ + KN ++ F+ D+ +P
Sbjct: 605 TTNSRGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRT--YSKFKNSLVVSFLSYCDYYRP 662
Query: 569 KFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFRMRVFLWGAQP 628
+F L+ENV + V F + ++ + L L++M YQ G++ AG YG+ Q R R + A P
Sbjct: 663 RFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAP 722
Query: 629 TEKLPPYALPTHDVVLRG------VIPTEFERNTVAYDEGQQAELARKLLLQDAISDLPS 682
EKLP + P H R V +F N G R + ++D +SDLP
Sbjct: 723 GEKLPLFPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSGP----FRTITVRDTMSDLPE 778
Query: 683 VDNYESRDEIPYDREPETEFQCFIR 707
V N S EI Y+ EP++ FQ +R
Sbjct: 779 VRNGASALEISYNGEPQSWFQRQLR 803
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 326 ANECEVGEPQKMDVKL-----LDLYSGCGAMSTXXXXXXXXXXXXXVTRWAVDINEYACQ 380
+ CE EP+ +++KL LD++SGCG +S T WA+++ + A Q
Sbjct: 524 SQACEPSEPE-IEIKLPKLRTLDVFSGCGGLSEGFHQAGISD-----TLWAIEMWDPAAQ 577
Query: 381 SLKLNHPETEVRNESAEDFLTLLREWE 407
+ +LN+P + V E L L+ E
Sbjct: 578 AFRLNNPGSTVFTEDCNILLKLVMAGE 604
>pdb|3PTA|A Chain A, Crystal Structure Of Human Dnmt1(646-1600) In Complex With
Dna
Length = 956
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 110/205 (53%), Gaps = 12/205 (5%)
Query: 509 THGFKSKILPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLKP 568
T + + LP GDV+++CGGPPCQG SG NRF ++ + KN ++ F+ D+ +P
Sbjct: 559 TTNSRGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRT--YSKFKNSLVVSFLSYCDYYRP 616
Query: 569 KFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFRMRVFLWGAQP 628
+F L+ENV + V F + ++ + L L++M YQ G++ AG YG+ Q R R + A P
Sbjct: 617 RFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAP 676
Query: 629 TEKLPPYALPTHDVVLRG------VIPTEFERNTVAYDEGQQAELARKLLLQDAISDLPS 682
EKLP + P H R V +F N G R + ++D +SDLP
Sbjct: 677 GEKLPLFPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSGP----FRTITVRDTMSDLPE 732
Query: 683 VDNYESRDEIPYDREPETEFQCFIR 707
V N S EI Y+ EP++ FQ +R
Sbjct: 733 VRNGASALEISYNGEPQSWFQRQLR 757
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 326 ANECEVGEPQKMDVKL-----LDLYSGCGAMSTXXXXXXXXXXXXXVTRWAVDINEYACQ 380
+ CE EP+ +++KL LD++SGCG +S T WA+++ + A Q
Sbjct: 478 SQACEPSEPE-IEIKLPKLRTLDVFSGCGGLSEGFHQAGISD-----TLWAIEMWDPAAQ 531
Query: 381 SLKLNHPETEVRNESAEDFLTLLREWE 407
+ +LN+P + V E L L+ E
Sbjct: 532 AFRLNNPGSTVFTEDCNILLKLVMAGE 558
>pdb|3G7U|A Chain A, Crystal Structure Of Putative Dna Modification
Methyltransferase Encoded Within Prophage Cp-933r
(E.Coli)
Length = 376
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 59/126 (46%), Gaps = 11/126 (8%)
Query: 508 VTHGFKSKILPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLK 567
+ GF +P +D I GGPPCQG S K NP D +N+ + F +V L+
Sbjct: 61 IIKGFFKNDMP----IDGIIGGPPCQGFSSI----GKGNP-DDSRNQLYMHFYRLVSELQ 111
Query: 568 PKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGM-MAAGAYGLPQFRMRVFLWGA 626
P F L ENV I++ + A L+ +Y + + + A YG P R R F G
Sbjct: 112 PLFFLAENVPGIMQEKYSGIRNKAF-NLVSGDYDILDPIKVKASDYGAPTIRTRYFFIGV 170
Query: 627 QPTEKL 632
+ + KL
Sbjct: 171 KKSLKL 176
>pdb|1SVU|A Chain A, Structure Of The Q237w Mutant Of Hhai Dna
Methyltransferase: An Insight Into Protein-Protein
Interactions
pdb|1SVU|B Chain B, Structure Of The Q237w Mutant Of Hhai Dna
Methyltransferase: An Insight Into Protein-Protein
Interactions
Length = 327
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 83/218 (38%), Gaps = 32/218 (14%)
Query: 499 NCGEKIKEFVTHGFKSKILPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIV 558
N GEK + +T K +P D D++C G PCQ S K D +
Sbjct: 52 NFGEKPEGDITQ-VNEKTIP---DHDILCAGFPCQAFS----ISGKQKGFEDSRGTLFFD 103
Query: 559 FMDIVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFR 618
IV KPK V MENV + G + +++Y ++ A YG+PQ R
Sbjct: 104 IARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKR 163
Query: 619 MRVFLWGAQPTEKLPPYALPTHDVVLRGVIPTEFERNTVAYDEGQQAELARKLLLQDAIS 678
R+++ + + + P FE NT D LLL D+
Sbjct: 164 ERIYMICFRNDLNIQNFQF-----------PKPFELNTFVKD----------LLLPDSEV 202
Query: 679 DLPSVDNYESRDEIPYDREPETEFQCFIRLRKDGKKLW 716
+ +D +D + ++E E +RL GK W
Sbjct: 203 EHLVID---RKDLVMTNQEIEQTTPKTVRLGIVGKGGW 237
>pdb|2UYH|A Chain A, Hhai Dna Methyltransferase S87q-Q237s Mutant Complex With
13mer Gcgc-Gmgc Oligonucleotide And Sah
Length = 327
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 8/125 (6%)
Query: 499 NCGEKIKEFVTHGFKSKILPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIV 558
N GEK + +T K +P D D++C G PCQ S + K D +
Sbjct: 52 NFGEKPEGDITQ-VNEKTIP---DHDILCAGFPCQAFS----IQGKQKGFEDSRGTLFFD 103
Query: 559 FMDIVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFR 618
IV KPK V MENV + G + +++Y ++ A YG+PQ R
Sbjct: 104 IARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKR 163
Query: 619 MRVFL 623
R+++
Sbjct: 164 ERIYM 168
>pdb|1MHT|A Chain A, Covalent Ternary Structure Of Hhai Methyltransferase, Dna
And S-Adenosyl-L-Homocysteine
pdb|3MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With
Unmodified Dna And Adohcy
pdb|4MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Native
Dna And Adohcy
pdb|5MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With
Hemimethylated Dna And Adohcy
pdb|6MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Adohcy
And Dna Containing 4'-Thio-2'deoxycytidine At The Target
pdb|7MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
pdb|8MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
pdb|9MHT|A Chain A, Cytosine-specific Methyltransferase Hhai/dna Complex
pdb|10MH|A Chain A, Ternary Structure Of Hhai Methyltransferase With Adohcy
And Hemimethylated Dna Containing
5,6-Dihydro-5-Azacytosine At The Target
pdb|2HMY|B Chain B, Binary Complex Of Hhai Methyltransferase With Adomet
Formed In The Presence Of A Short Nonpsecific Dna
Oligonucleotide
pdb|1M0E|A Chain A, Zebularine: A Novel Dna Methylation Inhibitor That Forms A
Covalent Complex With Dna Methyltransferase
pdb|1SKM|A Chain A, Hhai Methyltransferase In Complex With Dna Containing An
Abasic South Carbocyclic Sugar At Its Target Site
pdb|2C7O|A Chain A, Hhai Dna Methyltransferase Complex With 13mer
Oligonucleotide Containing 2-Aminopurine Adjacent To The
Target Base (Pcgc:gmgc) And Sah
pdb|2C7P|A Chain A, Hhai Dna Methyltransferase Complex With Oligonucleotide
Containing 2-Aminopurine Opposite To The Target Base (
Gcgc:gmpc) And Sah
pdb|2C7Q|A Chain A, Hhai Dna Methyltransferase Complex With Oligonucleotide
Containing 2-Aminopurine Outside The Recognition
Sequence (Paired With G) And Sah
pdb|2HR1|A Chain A, Ternary Structure Of Wt M.hhai C5-cytosine Dna
Methyltransferase With Unmodified Dna And Adohcy
pdb|1HMY|A Chain A, Crystal Structure Of The Hhai Dna Methyltransferase
Complexed With S- Adenosyl-L-Methionine
pdb|3EEO|A Chain A, M. Hhai Co-Crystallized With Synthetic Dsdna Containing A
Propane Diol In Place Of The Deoxycytidine Residue
Targeted For Methylation
Length = 327
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 8/125 (6%)
Query: 499 NCGEKIKEFVTHGFKSKILPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIV 558
N GEK + +T K +P D D++C G PCQ S K D +
Sbjct: 52 NFGEKPEGDITQ-VNEKTIP---DHDILCAGFPCQAFS----ISGKQKGFEDSRGTLFFD 103
Query: 559 FMDIVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFR 618
IV KPK V MENV + G + +++Y ++ A YG+PQ R
Sbjct: 104 IARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKR 163
Query: 619 MRVFL 623
R+++
Sbjct: 164 ERIYM 168
>pdb|1FJX|A Chain A, Structure Of Ternary Complex Of Hhai Methyltransferase
Mutant (T250g) In Complex With Dna And Adohcy
pdb|2C7R|A Chain A, Hhai Dna Methyltransferase (T250g Mutant) Complex With
Oligonucleotide Containing 2-Aminopurine As A Target
Base (Gpgc:gmgc) And Sah
Length = 327
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 8/125 (6%)
Query: 499 NCGEKIKEFVTHGFKSKILPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIV 558
N GEK + +T K +P D D++C G PCQ S K D +
Sbjct: 52 NFGEKPEGDITQ-VNEKTIP---DHDILCAGFPCQAFS----ISGKQKGFEDSRGTLFFD 103
Query: 559 FMDIVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFR 618
IV KPK V MENV + G + +++Y ++ A YG+PQ R
Sbjct: 104 IARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKR 163
Query: 619 MRVFL 623
R+++
Sbjct: 164 ERIYM 168
>pdb|2I9K|A Chain A, Engineered Extrahelical Base Destabilization Enhances
Sequence Discrimination Of Dna Methyltransferase M.Hhai
Length = 327
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 8/125 (6%)
Query: 499 NCGEKIKEFVTHGFKSKILPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIV 558
N GEK + +T K +P D D++C G PCQ S K D +
Sbjct: 52 NFGEKPEGDITQ-VNEKTIP---DHDILCAGFPCQAFS----ISGKQKGFEDSRGTLFFD 103
Query: 559 FMDIVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFR 618
IV KPK V MENV + G + +++Y ++ A YG+PQ R
Sbjct: 104 IARIVREKKPKVVFMENVKNAASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKR 163
Query: 619 MRVFL 623
R+++
Sbjct: 164 ERIYM 168
>pdb|2ZCJ|A Chain A, Ternary Structure Of The Glu119gln M.Hhai, C5-Cytosine Dna
Methyltransferase, With Unmodified Dna And Adohcy
Length = 327
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 8/125 (6%)
Query: 499 NCGEKIKEFVTHGFKSKILPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIV 558
N GEK + +T K +P D D++C G PCQ S K D +
Sbjct: 52 NFGEKPEGDITQ-VNEKTIP---DHDILCAGFPCQAFS----ISGKQKGFEDSRGTLFFD 103
Query: 559 FMDIVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFR 618
IV KPK V M+NV + G + +++Y ++ A YG+PQ R
Sbjct: 104 IARIVREKKPKVVFMQNVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKR 163
Query: 619 MRVFL 623
R+++
Sbjct: 164 ERIYM 168
>pdb|1DCT|A Chain A, Dna (Cytosine-5) Methylase From Haeiii Covalently Bound To
Dna
pdb|1DCT|B Chain B, Dna (Cytosine-5) Methylase From Haeiii Covalently Bound To
Dna
Length = 324
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 54/121 (44%), Gaps = 21/121 (17%)
Query: 524 DVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLKPKFVLMENVVDIVKFA 583
D I GGPPCQ S R D+P + K ++ I+ KP F L ENV
Sbjct: 63 DGIIGGPPCQSWSEGGSLRGIDDP----RGKLFYEYIRILKQKKPIFFLAENV------- 111
Query: 584 KGLLGRY---ALARLIQ----MNYQVRMGMMAAGAYGLPQFRMRVFLWGAQP---TEKLP 633
KG++ + A+ IQ Y V + ++ A YG+ Q R RVF G + LP
Sbjct: 112 KGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIGFRKELNINYLP 171
Query: 634 P 634
P
Sbjct: 172 P 172
>pdb|1G55|A Chain A, Structure Of Human Dnmt2, An Enigmatic Dna
Methyltransferase Homologue
Length = 343
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 20/166 (12%)
Query: 524 DVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLK--PKFVLMENVVDI-V 580
D+I PPCQ + R + D + + +DI+ L+ PK++L+ENV V
Sbjct: 70 DMILMSPPCQPFTRIGR----QGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFEV 125
Query: 581 KFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFRMRVFLWGAQPTEKLPPYALPTH 640
+ LL + + +Q + +++ + G+P R+R FL +E L P+ P
Sbjct: 126 SSTRDLL----IQTIENXGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPL-PFQAP-- 178
Query: 641 DVVLRGVIPTEFERNTVAYDEGQQAELARKLLLQDAISDLPSVDNY 686
G + EF + + Q ++L+ K +L+D + D V+ Y
Sbjct: 179 -----GQVLMEFPKIEIHRKNQQDSDLSVK-MLKDFLEDDTDVNQY 218
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 339 VKLLDLYSGCGAMSTXXXXXXXXXXXXXVTRWAVDINEYACQSLKLNHPETEVRNESAED 398
+++L+LYSG G M A+D+N A + K N P T++ ++ E
Sbjct: 3 LRVLELYSGVGGMHHALRESCIPAQVVA----AIDVNTVANEVYKYNFPHTQLLAKTIEG 58
Query: 399 FLTLLREWEKLCISFSLIARKDPQQ 423
L E+++L SF +I P Q
Sbjct: 59 I--TLEEFDRL--SFDMILMSPPCQ 79
>pdb|2Z6U|A Chain A, Ternary Structure Of The Glu119ala M.Hhai, C5-Cytosine Dna
Methyltransferase, With Unmodified Dna And Adohcy
Length = 327
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 8/125 (6%)
Query: 499 NCGEKIKEFVTHGFKSKILPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIV 558
N GEK + +T K +P D D++C G PCQ S K D +
Sbjct: 52 NFGEKPEGDITQ-VNEKTIP---DHDILCAGFPCQAFS----ISGKQKGFEDSRGTLFFD 103
Query: 559 FMDIVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFR 618
IV KPK V M NV + G + +++Y ++ A YG+PQ R
Sbjct: 104 IARIVREKKPKVVFMANVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKR 163
Query: 619 MRVFL 623
R+++
Sbjct: 164 ERIYM 168
>pdb|2UZ4|A Chain A, Hhai Dna Methyltransferase R165n Mutant Complex With 13mer
Gcgc-Gmgc Oligonucleotide And Sah
Length = 327
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 8/125 (6%)
Query: 499 NCGEKIKEFVTHGFKSKILPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIV 558
N GEK + +T K +P D D++C G PCQ S K D +
Sbjct: 52 NFGEKPEGDITQ-VNEKTIP---DHDILCAGFPCQAFS----ISGKQKGFEDSRGTLFFD 103
Query: 559 FMDIVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFR 618
IV KPK V MENV + G + +++Y ++ A YG+PQ R
Sbjct: 104 IARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKR 163
Query: 619 MRVFL 623
+++
Sbjct: 164 ENIYM 168
>pdb|2UYC|A Chain A, Hhai Dna Methyltransferase R163n Mutant Complex With 13mer
Gcgc-Gmgc Oligonucleotide And Sah
Length = 327
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 8/125 (6%)
Query: 499 NCGEKIKEFVTHGFKSKILPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIV 558
N GEK + +T K +P D D++C G PCQ S K D +
Sbjct: 52 NFGEKPEGDITQ-VNEKTIP---DHDILCAGFPCQAFS----ISGKQKGFEDSRGTLFFD 103
Query: 559 FMDIVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFR 618
IV KPK V MENV + G + +++Y ++ A YG+PQ
Sbjct: 104 IARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKN 163
Query: 619 MRVFL 623
R+++
Sbjct: 164 ERIYM 168
>pdb|2Z6Q|A Chain A, Ternary Structure Of Arg165ala M.Hhai C5-Cytosine Dna
Methyltransferase With Unmodified Dna And Adohcy
Length = 327
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 8/125 (6%)
Query: 499 NCGEKIKEFVTHGFKSKILPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIV 558
N GEK + +T K +P D D++C G PCQ S K D +
Sbjct: 52 NFGEKPEGDITQ-VNEKTIP---DHDILCAGFPCQAFS----ISGKQKGFEDSRGTLFFD 103
Query: 559 FMDIVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFR 618
IV KPK V MENV + G + +++Y ++ A YG+PQ R
Sbjct: 104 IARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKR 163
Query: 619 MRVFL 623
+++
Sbjct: 164 EAIYM 168
>pdb|2Z6A|A Chain A, S-Adenosyl-L-Methionine-Dependent Methyl Transfer:
Observable Precatalytic Intermediates During Dna
Cytosine Methylation
Length = 327
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 8/125 (6%)
Query: 499 NCGEKIKEFVTHGFKSKILPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIV 558
N GEK + +T K +P D D++C G P Q S K D +
Sbjct: 52 NFGEKPEGDITQ-VNEKTIP---DHDILCAGFPAQAFS----ISGKQKGFEDSRGTLFFD 103
Query: 559 FMDIVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFR 618
IV KPK V MENV + G + +++Y ++ A YG+PQ R
Sbjct: 104 IARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKR 163
Query: 619 MRVFL 623
R+++
Sbjct: 164 ERIYM 168
>pdb|3UBT|Y Chain Y, Crystal Structure Of C71s Mutant Of Dna Cytosine-5
Methyltransferase M.Haeiii Bound To Dna
pdb|3UBT|A Chain A, Crystal Structure Of C71s Mutant Of Dna Cytosine-5
Methyltransferase M.Haeiii Bound To Dna
pdb|3UBT|B Chain B, Crystal Structure Of C71s Mutant Of Dna Cytosine-5
Methyltransferase M.Haeiii Bound To Dna
Length = 331
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 53/121 (43%), Gaps = 21/121 (17%)
Query: 524 DVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLKPKFVLMENVVDIVKFA 583
D I GGPP Q S R D+P + K ++ I+ KP F L ENV
Sbjct: 63 DGIIGGPPSQSWSEGGSLRGIDDP----RGKLFYEYIRILKQKKPIFFLAENV------- 111
Query: 584 KGLLGRY---ALARLIQ----MNYQVRMGMMAAGAYGLPQFRMRVFLWGAQP---TEKLP 633
KG++ + A+ IQ Y V + ++ A YG+ Q R RVF G + LP
Sbjct: 112 KGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIGFRKELNINYLP 171
Query: 634 P 634
P
Sbjct: 172 P 172
>pdb|4HAE|A Chain A, Crystal Structure Of The Cdyl2-Chromodomain
Length = 81
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 466 DPKEIKKRGLYLKVRWRNYGPSEDTWEPIEGLSNCGEKIKEF 507
D ++ KK +RW+ YG +EDTWEP L +C E I EF
Sbjct: 31 DKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEF 72
>pdb|3ME5|A Chain A, Crystal Structure Of Putative Dna Cytosine Methylase From
Shigella Flexneri 2a Str. 2457t
Length = 482
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 13/115 (11%)
Query: 524 DVICGGPPCQ-----GVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLKPKFVLMENVVD 578
DV+ G PCQ GVS N D + + I+D +P ++ENV +
Sbjct: 171 DVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARRPAXFVLENVKN 230
Query: 579 IVKFAKGLLGRYALARLIQMNYQVRMG--------MMAAGAYGLPQFRMRVFLWG 625
+ KG R L ++ Y V + G + LPQ R R+ L G
Sbjct: 231 LKSHDKGKTFRIIXQTLDELGYDVADAEDNGPDDPKIIDGKHFLPQHRERIVLVG 285
>pdb|3LX6|A Chain A, Crystal Structure Of Putative Dna Cytosine Methylase From
Shigella Flexneri 2a Str. 2457t
pdb|3LX6|B Chain B, Crystal Structure Of Putative Dna Cytosine Methylase From
Shigella Flexneri 2a Str. 2457t
Length = 410
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 13/115 (11%)
Query: 524 DVICGGPPCQ-----GVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLKPKFVLMENVVD 578
DV+ G PCQ GVS N D + + I+D +P ++ENV +
Sbjct: 109 DVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARRPAXFVLENVKN 168
Query: 579 IVKFAKGLLGRYALARLIQMNYQVRMG--------MMAAGAYGLPQFRMRVFLWG 625
+ KG R L ++ Y V + G + LPQ R R+ L G
Sbjct: 169 LKSHDKGKTFRIIXQTLDELGYDVADAEDNGPDDPKIIDGKHFLPQHRERIVLVG 223
>pdb|2DNT|A Chain A, Solution Structure Of Rsgi Ruh-064, A Chromo Domain From
Human Cdna
Length = 78
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 466 DPKEIKKRGLYLKVRWRNYGPSEDTWEPIEGLSNCGEKIKEF 507
D ++ KK VRW+ Y +DTWEP + L NC E I +F
Sbjct: 21 DKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDF 62
>pdb|1G6Z|A Chain A, Solution Structure Of The Clr4 Chromo Domain
Length = 70
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 478 KVRWRNYGPSEDTWEPIEGLSNCGEKIKEF 507
++RW NY DTWEP E LS C + E+
Sbjct: 29 RIRWLNYSSRSDTWEPPENLSGCSAVLAEW 58
>pdb|3QO2|A Chain A, Structural Insights For Mpp8 Chromodomain Interaction With
Histone H3 Lysine 9
pdb|3QO2|B Chain B, Structural Insights For Mpp8 Chromodomain Interaction With
Histone H3 Lysine 9
pdb|3QO2|C Chain C, Structural Insights For Mpp8 Chromodomain Interaction With
Histone H3 Lysine 9
pdb|3QO2|D Chain D, Structural Insights For Mpp8 Chromodomain Interaction With
Histone H3 Lysine 9
Length = 64
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 478 KVRWRNYGPSEDTWEPIEGLSNCGEKIKEF 507
KVRW+ Y +DTWEP L +C E + EF
Sbjct: 25 KVRWKGYTSDDDTWEPEIHLEDCKEVLLEF 54
>pdb|3LWE|A Chain A, The Crystal Structure Of Mpp8
pdb|3LWE|B Chain B, The Crystal Structure Of Mpp8
pdb|3R93|A Chain A, Crystal Structure Of The Chromo Domain Of M-Phase
Phosphoprotein 8 Bound To H3k9me3 Peptide
pdb|3R93|B Chain B, Crystal Structure Of The Chromo Domain Of M-Phase
Phosphoprotein 8 Bound To H3k9me3 Peptide
pdb|3R93|C Chain C, Crystal Structure Of The Chromo Domain Of M-Phase
Phosphoprotein 8 Bound To H3k9me3 Peptide
pdb|3R93|D Chain D, Crystal Structure Of The Chromo Domain Of M-Phase
Phosphoprotein 8 Bound To H3k9me3 Peptide
pdb|3SVM|A Chain A, Human Mpp8 - Human Dnmt3ak47me2 Peptide
Length = 62
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 478 KVRWRNYGPSEDTWEPIEGLSNCGEKIKEF 507
KVRW+ Y +DTWEP L +C E + EF
Sbjct: 23 KVRWKGYTSDDDTWEPEIHLEDCKEVLLEF 52
>pdb|4H0N|A Chain A, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|B Chain B, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|C Chain C, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|D Chain D, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
Length = 333
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 522 DVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFL-KPKFVLMENVVDIV 580
+VD I PPCQ + ++ + ++P + + + I+D L ++LMENV
Sbjct: 69 NVDTILMSPPCQPFTRNGKYLDDNDP----RTNSFLYLIGILDQLDNVDYILMENVKG-- 122
Query: 581 KFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFRMRVF 622
F + + +L + N+ + ++ G+P R+R +
Sbjct: 123 -FENSTVRNLFIDKLKECNFIYQEFLLCPSTVGVPNSRLRYY 163
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 337 MDVKLLDLYSGCGAMSTXXXXXXXXXXXXXVTRWAVDINEYACQSLKLNHPETEVRNESA 396
M K+L+LYSG G M AVDIN A K N PET + N +
Sbjct: 2 MSHKILELYSGIGGMHCAWKESGLDGEIVA----AVDINTVANSVYKHNFPETNLLNRNI 57
Query: 397 EDFL-TLLREW 406
+ ++++W
Sbjct: 58 QQLTPQVIKKW 68
>pdb|3MTS|A Chain A, Chromo Domain Of Human Histone-lysine N-methyltransferase
Suv39h1
pdb|3MTS|B Chain B, Chromo Domain Of Human Histone-lysine N-methyltransferase
Suv39h1
pdb|3MTS|C Chain C, Chromo Domain Of Human Histone-lysine N-methyltransferase
Suv39h1
Length = 64
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 466 DPKEIKKRGLYLKVRWRNYGPSEDTWEPIEGLSNCGEKIKEF 507
D K+I+++ YL V+WR Y SE TWEP + L C +K+F
Sbjct: 8 DYKKIREQEYYL-VKWRGYPDSESTWEPRQNL-KCVRILKQF 47
>pdb|1AP0|A Chain A, Structure Of The Chromatin Binding (Chromo) Domain From
Mouse Modifier Protein 1, Nmr, 26 Structures
pdb|1GUW|A Chain A, Structure Of The Chromodomain From Mouse Hp1beta In
Complex With The Lysine 9-Methyl Histone H3 N-Terminal
Peptide, Nmr, 25 Structures
Length = 73
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 466 DPKEIKKRGLYLKVRWRNYGPSEDTWEPIEGLSNCGEKIKEFV 508
D + +K + YL ++W+ + ++TWEP E L +C + I EF+
Sbjct: 21 DRRVVKGKVEYL-LKWKGFSDEDNTWEPEENL-DCPDLIAEFL 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,343,893
Number of Sequences: 62578
Number of extensions: 737215
Number of successful extensions: 1334
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1255
Number of HSP's gapped (non-prelim): 55
length of query: 718
length of database: 14,973,337
effective HSP length: 106
effective length of query: 612
effective length of database: 8,340,069
effective search space: 5104122228
effective search space used: 5104122228
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)