Query 047980
Match_columns 718
No_of_seqs 444 out of 2419
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 05:06:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047980.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047980hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00145 DNA_methylase: C-5 cy 100.0 4E-43 8.7E-48 374.4 15.3 168 339-633 1-168 (335)
2 TIGR00675 dcm DNA-methyltransf 100.0 1.3E-40 2.9E-45 357.8 19.4 173 341-640 1-175 (315)
3 cd00315 Cyt_C5_DNA_methylase C 100.0 3.1E-40 6.6E-45 348.7 18.2 169 339-633 1-169 (275)
4 COG0270 Dcm Site-specific DNA 100.0 1.6E-40 3.5E-45 359.0 14.1 167 337-629 2-169 (328)
5 PRK10458 DNA cytosine methylas 100.0 6.6E-38 1.4E-42 350.3 17.0 191 335-632 85-292 (467)
6 cd04716 BAH_plantDCM_I BAH, or 100.0 9.5E-33 2.1E-37 256.9 12.6 122 185-307 1-122 (122)
7 cd04708 BAH_plantDCM_II BAH, o 100.0 8.4E-30 1.8E-34 253.7 14.1 167 181-351 1-202 (202)
8 cd04713 BAH_plant_3 BAH, or Br 99.9 1.9E-27 4.2E-32 228.7 14.2 132 173-308 6-139 (146)
9 cd04714 BAH_BAHCC1 BAH, or Bro 99.9 5.6E-26 1.2E-30 212.0 10.4 115 185-301 1-118 (121)
10 cd04760 BAH_Dnmt1_I BAH, or Br 99.9 1E-25 2.2E-30 208.9 10.9 115 185-303 1-124 (124)
11 cd04717 BAH_polybromo BAH, or 99.9 1.6E-25 3.5E-30 208.9 11.2 118 185-306 1-120 (121)
12 cd04709 BAH_MTA BAH, or Bromo 99.9 2.9E-25 6.2E-30 216.4 12.4 125 188-314 3-148 (164)
13 smart00439 BAH Bromo adjacent 99.9 1.2E-24 2.6E-29 200.7 11.6 118 188-306 1-120 (120)
14 cd04370 BAH BAH, or Bromo Adja 99.9 1.4E-24 3E-29 200.3 11.6 120 185-306 1-123 (123)
15 PF01426 BAH: BAH domain; Int 99.9 1.1E-24 2.3E-29 201.0 10.5 116 187-306 1-119 (119)
16 cd04715 BAH_Orc1p_like BAH, or 99.9 1.9E-24 4.2E-29 209.9 12.2 127 173-301 15-150 (159)
17 cd04710 BAH_fungalPHD BAH, or 99.9 2.7E-24 5.8E-29 203.8 11.5 117 181-303 5-134 (135)
18 cd04712 BAH_DCM_I BAH, or Brom 99.9 3.4E-23 7.3E-28 195.4 13.1 114 184-307 2-130 (130)
19 cd04721 BAH_plant_1 BAH, or Br 99.9 1.8E-22 3.8E-27 190.5 9.5 115 182-298 2-117 (130)
20 cd04718 BAH_plant_2 BAH, or Br 99.8 1.6E-21 3.6E-26 184.9 1.8 96 204-305 52-147 (148)
21 KOG0919 C-5 cytosine-specific 99.8 1.5E-20 3.4E-25 188.8 6.5 166 337-628 2-170 (338)
22 cd04711 BAH_Dnmt1_II BAH, or B 99.8 5.9E-20 1.3E-24 171.3 9.2 112 196-307 15-137 (137)
23 cd04719 BAH_Orc1p_animal BAH, 99.8 6.1E-19 1.3E-23 165.4 9.6 111 187-298 2-121 (128)
24 cd04720 BAH_Orc1p_Yeast BAH, o 99.7 1.4E-17 3E-22 165.4 10.8 120 184-305 49-177 (179)
25 KOG1886 BAH domain proteins [T 99.5 5.6E-15 1.2E-19 162.1 7.4 133 173-309 35-172 (464)
26 KOG1827 Chromatin remodeling c 99.5 3.3E-14 7.1E-19 161.5 5.8 131 176-309 178-310 (629)
27 KOG3554 Histone deacetylase co 98.8 8.7E-10 1.9E-14 119.4 -0.5 121 188-310 5-168 (693)
28 TIGR02085 meth_trns_rumB 23S r 97.1 0.003 6.5E-08 70.3 11.5 41 339-386 235-275 (374)
29 TIGR00479 rumA 23S rRNA (uraci 97.1 0.0064 1.4E-07 68.8 14.1 42 338-386 293-334 (431)
30 PF13659 Methyltransf_26: Meth 97.1 0.0011 2.5E-08 60.2 6.6 43 339-388 2-45 (117)
31 TIGR03704 PrmC_rel_meth putati 97.0 0.0035 7.6E-08 66.0 10.2 44 338-386 87-130 (251)
32 PRK11783 rlmL 23S rRNA m(2)G24 97.0 0.01 2.2E-07 71.3 14.6 43 338-386 539-581 (702)
33 PF09445 Methyltransf_15: RNA 96.9 0.0031 6.7E-08 62.3 7.7 39 340-385 2-40 (163)
34 PRK03522 rumB 23S rRNA methylu 96.9 0.0042 9.1E-08 67.4 9.5 42 338-386 174-215 (315)
35 PF03602 Cons_hypoth95: Conser 96.7 0.0036 7.9E-08 62.9 7.2 44 336-386 41-85 (183)
36 COG2265 TrmA SAM-dependent met 96.7 0.015 3.3E-07 65.9 12.2 43 336-385 292-334 (432)
37 TIGR00095 RNA methyltransferas 96.5 0.0036 7.7E-08 63.2 5.2 57 338-400 50-112 (189)
38 PHA03411 putative methyltransf 96.4 0.028 6.1E-07 60.0 11.5 52 339-396 66-118 (279)
39 KOG3420 Predicted RNA methylas 96.4 0.0028 6.1E-08 61.0 3.4 47 336-388 47-93 (185)
40 COG2263 Predicted RNA methylas 96.3 0.0039 8.5E-08 62.6 4.4 56 338-399 46-105 (198)
41 PRK13168 rumA 23S rRNA m(5)U19 96.3 0.046 1E-06 62.2 13.1 42 338-386 298-339 (443)
42 TIGR00537 hemK_rel_arch HemK-r 96.3 0.058 1.3E-06 53.4 12.2 41 339-386 21-61 (179)
43 TIGR00446 nop2p NOL1/NOP2/sun 96.1 0.029 6.3E-07 59.4 10.0 47 336-386 70-116 (264)
44 PF02475 Met_10: Met-10+ like- 96.0 0.0063 1.4E-07 62.1 4.1 45 336-385 100-144 (200)
45 PHA03412 putative methyltransf 95.9 0.014 3E-07 61.0 5.9 55 338-395 50-105 (241)
46 PRK15128 23S rRNA m(5)C1962 me 95.7 0.056 1.2E-06 60.8 10.6 43 338-386 221-263 (396)
47 TIGR00308 TRM1 tRNA(guanine-26 95.7 0.013 2.9E-07 65.3 5.3 58 338-400 45-108 (374)
48 PRK14967 putative methyltransf 95.7 0.14 3E-06 52.7 12.4 43 338-386 37-79 (223)
49 PRK10909 rsmD 16S rRNA m(2)G96 95.6 0.02 4.3E-07 58.4 5.8 56 338-399 54-114 (199)
50 PRK04338 N(2),N(2)-dimethylgua 95.5 0.023 4.9E-07 63.6 6.1 58 338-400 58-120 (382)
51 COG0742 N6-adenine-specific me 95.3 0.031 6.7E-07 56.4 5.7 60 335-400 41-106 (187)
52 PRK05031 tRNA (uracil-5-)-meth 95.2 0.03 6.5E-07 62.1 6.1 55 339-400 208-267 (362)
53 PRK14904 16S rRNA methyltransf 95.2 0.1 2.2E-06 59.5 10.4 46 337-386 250-295 (445)
54 PRK14901 16S rRNA methyltransf 94.7 0.13 2.7E-06 58.6 9.5 47 336-386 251-297 (434)
55 COG2520 Predicted methyltransf 94.7 0.026 5.6E-07 62.0 3.8 44 337-386 188-231 (341)
56 cd00024 CHROMO Chromatin organ 94.6 0.0069 1.5E-07 48.0 -0.7 35 473-507 18-52 (55)
57 PRK10901 16S rRNA methyltransf 94.5 0.12 2.6E-06 58.6 8.5 46 336-387 243-289 (427)
58 TIGR02143 trmA_only tRNA (urac 94.3 0.058 1.3E-06 59.7 5.2 54 340-400 200-258 (353)
59 PRK09328 N5-glutamine S-adenos 94.1 0.9 2E-05 47.7 13.6 46 336-386 107-152 (275)
60 TIGR03534 RF_mod_PrmC protein- 94.0 0.48 1E-05 48.9 11.1 45 337-386 87-131 (251)
61 PRK14902 16S rRNA methyltransf 93.9 0.11 2.3E-06 59.2 6.6 45 338-386 251-295 (444)
62 PRK00121 trmB tRNA (guanine-N( 93.6 0.57 1.2E-05 47.6 10.7 45 337-386 40-84 (202)
63 smart00650 rADc Ribosomal RNA 93.4 0.095 2.1E-06 51.5 4.5 54 338-398 14-70 (169)
64 PF05958 tRNA_U5-meth_tr: tRNA 93.3 0.069 1.5E-06 59.1 3.6 39 340-385 199-237 (352)
65 PRK01544 bifunctional N5-gluta 93.2 1.3 2.9E-05 51.4 14.2 44 338-386 139-182 (506)
66 TIGR01177 conserved hypothetic 93.1 0.51 1.1E-05 51.6 10.0 44 336-386 181-224 (329)
67 PRK14968 putative methyltransf 92.9 1.5 3.3E-05 42.9 12.2 43 337-386 23-65 (188)
68 KOG1227 Putative methyltransfe 92.6 0.07 1.5E-06 57.1 2.3 43 339-386 196-238 (351)
69 cd02440 AdoMet_MTases S-adenos 92.4 1 2.2E-05 38.0 9.0 39 340-384 1-39 (107)
70 PRK14903 16S rRNA methyltransf 92.4 0.33 7.1E-06 55.3 7.6 46 337-386 237-282 (431)
71 PRK11805 N5-glutamine S-adenos 91.9 0.33 7.1E-06 52.8 6.5 43 339-386 135-177 (307)
72 KOG1911 Heterochromatin-associ 91.7 0.11 2.5E-06 55.3 2.7 54 451-510 46-99 (270)
73 PF05175 MTS: Methyltransferas 91.6 0.26 5.6E-06 48.6 4.9 45 337-386 31-75 (170)
74 PF00385 Chromo: Chromo (CHRro 91.4 0.057 1.2E-06 43.1 0.0 33 475-507 19-52 (55)
75 PRK03612 spermidine synthase; 91.4 2.3 4.9E-05 49.7 13.2 87 521-628 372-460 (521)
76 PF12847 Methyltransf_18: Meth 91.3 0.34 7.4E-06 43.4 5.0 54 338-396 2-61 (112)
77 PF10672 Methyltrans_SAM: S-ad 91.2 1.1 2.3E-05 48.4 9.4 43 338-386 124-166 (286)
78 PRK07402 precorrin-6B methylas 90.9 0.41 8.8E-06 48.1 5.7 57 337-398 40-101 (196)
79 TIGR00563 rsmB ribosomal RNA s 90.8 0.44 9.5E-06 54.0 6.4 45 336-386 237-282 (426)
80 smart00298 CHROMO Chromatin or 90.6 0.055 1.2E-06 42.7 -0.8 47 456-507 4-50 (55)
81 PF13847 Methyltransf_31: Meth 90.5 0.36 7.9E-06 46.2 4.7 59 336-398 2-65 (152)
82 COG4123 Predicted O-methyltran 90.3 0.46 9.9E-06 50.1 5.5 42 338-385 45-87 (248)
83 COG2890 HemK Methylase of poly 90.0 0.3 6.5E-06 52.4 3.9 42 340-386 113-154 (280)
84 KOG2078 tRNA modification enzy 88.7 0.46 1E-05 53.2 4.2 60 334-400 246-312 (495)
85 PRK11933 yebU rRNA (cytosine-C 88.3 1.2 2.6E-05 51.4 7.4 47 336-386 112-158 (470)
86 PRK00274 ksgA 16S ribosomal RN 88.0 0.61 1.3E-05 49.6 4.6 55 337-398 42-98 (272)
87 TIGR00755 ksgA dimethyladenosi 87.9 0.64 1.4E-05 48.8 4.6 55 337-398 29-86 (253)
88 COG1092 Predicted SAM-dependen 87.6 7.9 0.00017 43.7 13.1 43 338-386 218-260 (393)
89 KOG2730 Methylase [General fun 87.3 0.82 1.8E-05 47.3 4.7 58 339-406 96-159 (263)
90 TIGR03533 L3_gln_methyl protei 87.1 0.71 1.5E-05 49.5 4.5 44 338-386 122-165 (284)
91 PRK00377 cbiT cobalt-precorrin 87.0 1.1 2.3E-05 45.3 5.4 59 337-399 40-104 (198)
92 COG5076 Transcription factor i 86.9 0.099 2.1E-06 58.2 -2.3 91 179-271 268-359 (371)
93 KOG2904 Predicted methyltransf 86.9 0.69 1.5E-05 49.3 4.0 43 338-385 149-191 (328)
94 PRK14896 ksgA 16S ribosomal RN 86.4 0.78 1.7E-05 48.4 4.2 54 337-397 29-85 (258)
95 PF02005 TRM: N2,N2-dimethylgu 86.2 1.2 2.6E-05 49.9 5.8 60 337-400 49-115 (377)
96 PLN02336 phosphoethanolamine N 86.0 3.1 6.7E-05 47.7 9.2 39 338-383 38-76 (475)
97 PF13649 Methyltransf_25: Meth 85.5 1.3 2.8E-05 39.3 4.6 57 341-399 1-61 (101)
98 PRK01581 speE spermidine synth 85.1 40 0.00087 37.8 16.8 92 521-632 225-318 (374)
99 TIGR02021 BchM-ChlM magnesium 84.6 1.3 2.9E-05 45.1 4.8 44 337-387 55-98 (219)
100 PLN02585 magnesium protoporphy 83.8 1.4 3.1E-05 48.1 4.9 43 338-387 145-187 (315)
101 PRK06202 hypothetical protein; 83.7 1.6 3.4E-05 45.0 5.0 50 336-386 59-108 (232)
102 PRK08287 cobalt-precorrin-6Y C 83.2 1.4 3.1E-05 43.8 4.2 45 337-386 31-75 (187)
103 TIGR02469 CbiT precorrin-6Y C5 83.1 2.6 5.7E-05 38.0 5.6 42 338-385 20-62 (124)
104 PRK01683 trans-aconitate 2-met 82.4 2 4.2E-05 44.9 5.1 58 336-398 30-87 (258)
105 PRK11036 putative S-adenosyl-L 82.2 2.3 5E-05 44.5 5.6 57 336-399 43-105 (255)
106 TIGR03587 Pse_Me-ase pseudamin 82.0 2.1 4.4E-05 43.8 5.0 54 337-396 43-97 (204)
107 TIGR00536 hemK_fam HemK family 81.4 1.6 3.4E-05 46.7 4.1 42 339-385 116-157 (284)
108 PRK00517 prmA ribosomal protei 81.1 1.9 4E-05 45.3 4.4 45 336-386 118-162 (250)
109 TIGR00406 prmA ribosomal prote 81.0 1.9 4.1E-05 46.3 4.5 44 337-386 159-202 (288)
110 TIGR03840 TMPT_Se_Te thiopurin 80.2 2.5 5.3E-05 43.6 4.8 40 337-383 34-73 (213)
111 PLN02396 hexaprenyldihydroxybe 79.9 2.9 6.3E-05 45.9 5.5 56 337-399 131-192 (322)
112 PLN02781 Probable caffeoyl-CoA 79.3 3.7 8.1E-05 42.8 5.9 60 337-400 68-133 (234)
113 PRK10258 biotin biosynthesis p 78.7 2.8 6.2E-05 43.6 4.8 55 337-398 42-96 (251)
114 TIGR00417 speE spermidine synt 78.7 70 0.0015 34.0 15.4 46 338-388 73-118 (270)
115 TIGR00138 gidB 16S rRNA methyl 78.6 3.1 6.7E-05 41.7 4.8 56 338-398 43-103 (181)
116 COG0144 Sun tRNA and rRNA cyto 77.8 6 0.00013 44.0 7.3 50 335-387 154-203 (355)
117 PRK04148 hypothetical protein; 77.7 4 8.8E-05 39.2 5.1 51 337-396 16-67 (134)
118 PRK11727 23S rRNA mA1618 methy 77.4 2.9 6.4E-05 45.8 4.6 46 336-386 113-158 (321)
119 PTZ00338 dimethyladenosine tra 77.0 3.6 7.7E-05 44.6 5.1 55 337-398 36-96 (294)
120 PF06325 PrmA: Ribosomal prote 76.7 2.6 5.6E-05 45.7 3.9 44 336-385 160-203 (295)
121 PRK11207 tellurite resistance 76.6 3.5 7.5E-05 41.6 4.6 42 337-385 30-71 (197)
122 PRK10742 putative methyltransf 75.7 3.9 8.4E-05 43.3 4.7 42 338-386 89-130 (250)
123 PLN02823 spermine synthase 75.2 76 0.0016 35.2 14.8 67 558-628 200-268 (336)
124 PRK15001 SAM-dependent 23S rib 75.0 2.9 6.4E-05 46.9 3.9 43 339-386 230-272 (378)
125 PLN02244 tocopherol O-methyltr 74.8 4.1 8.9E-05 44.8 4.9 44 336-385 117-160 (340)
126 PRK13255 thiopurine S-methyltr 74.6 3.6 7.8E-05 42.5 4.2 39 338-383 38-76 (218)
127 COG2264 PrmA Ribosomal protein 74.5 3.8 8.2E-05 44.5 4.4 46 335-386 160-205 (300)
128 PRK09489 rsmC 16S ribosomal RN 74.2 3.6 7.8E-05 45.5 4.3 43 339-386 198-240 (342)
129 KOG3191 Predicted N6-DNA-methy 74.0 55 0.0012 33.4 12.0 40 338-381 44-83 (209)
130 PF00398 RrnaAD: Ribosomal RNA 73.7 4.3 9.3E-05 42.9 4.6 54 337-397 30-86 (262)
131 PF02086 MethyltransfD12: D12 73.6 2.8 6.1E-05 43.5 3.2 40 337-383 20-59 (260)
132 PRK00050 16S rRNA m(4)C1402 me 73.5 7.8 0.00017 42.1 6.5 63 337-405 19-86 (296)
133 TIGR02752 MenG_heptapren 2-hep 73.1 4.5 9.7E-05 41.3 4.5 58 336-397 44-106 (231)
134 PRK14966 unknown domain/N5-glu 72.7 3.8 8.3E-05 46.5 4.1 43 339-386 253-295 (423)
135 PRK07580 Mg-protoporphyrin IX 72.1 4.2 9.1E-05 41.4 3.9 45 336-387 62-106 (230)
136 PF01189 Nol1_Nop2_Fmu: NOL1/N 71.5 18 0.00039 38.9 8.7 47 336-386 84-130 (283)
137 PRK04266 fibrillarin; Provisio 71.4 7.6 0.00016 40.4 5.7 44 337-385 72-115 (226)
138 TIGR02987 met_A_Alw26 type II 71.0 4.7 0.0001 47.0 4.5 49 337-386 31-83 (524)
139 PF01170 UPF0020: Putative RNA 70.6 3.3 7.3E-05 41.3 2.8 49 336-386 27-81 (179)
140 TIGR00091 tRNA (guanine-N(7)-) 70.4 11 0.00023 37.9 6.4 58 337-399 16-78 (194)
141 PRK00811 spermidine synthase; 70.2 8.4 0.00018 41.4 5.9 58 338-400 77-144 (283)
142 PRK11524 putative methyltransf 69.9 5 0.00011 43.0 4.1 44 336-386 207-250 (284)
143 COG2226 UbiE Methylase involve 69.8 6.6 0.00014 41.3 4.8 58 337-399 51-113 (238)
144 KOG2748 Uncharacterized conser 69.8 4.7 0.0001 44.1 3.8 42 452-499 9-50 (369)
145 TIGR00080 pimt protein-L-isoas 69.7 6.7 0.00014 40.0 4.8 47 336-386 76-122 (215)
146 PF01555 N6_N4_Mtase: DNA meth 69.4 5.6 0.00012 39.8 4.1 41 336-383 190-230 (231)
147 COG1867 TRM1 N2,N2-dimethylgua 69.2 6.6 0.00014 43.7 4.8 58 338-400 53-115 (380)
148 PF11599 AviRa: RRNA methyltra 69.1 6.6 0.00014 40.8 4.5 55 327-386 41-97 (246)
149 PRK12335 tellurite resistance 68.7 5.7 0.00012 42.5 4.2 40 339-385 122-161 (287)
150 PRK11188 rrmJ 23S rRNA methylt 68.1 4.2 9.1E-05 41.6 2.9 52 336-399 50-103 (209)
151 PRK05134 bifunctional 3-demeth 67.7 11 0.00024 38.5 6.0 44 336-386 47-90 (233)
152 TIGR01934 MenG_MenH_UbiE ubiqu 67.2 8.9 0.00019 38.4 5.1 56 337-396 39-97 (223)
153 PRK13944 protein-L-isoaspartat 66.1 7.3 0.00016 39.6 4.2 46 337-386 72-117 (205)
154 TIGR00478 tly hemolysin TlyA f 66.1 9.9 0.00022 39.7 5.2 47 336-388 74-120 (228)
155 KOG2133 Transcriptional corepr 65.2 4.1 8.8E-05 49.7 2.4 122 182-304 140-282 (1229)
156 PRK15451 tRNA cmo(5)U34 methyl 65.0 8.8 0.00019 40.1 4.6 58 337-397 56-119 (247)
157 PF02384 N6_Mtase: N-6 DNA Met 62.8 8 0.00017 41.6 4.0 47 336-385 45-96 (311)
158 TIGR01983 UbiG ubiquinone bios 61.9 13 0.00028 37.6 5.1 43 337-386 45-87 (224)
159 COG2227 UbiG 2-polyprenyl-3-me 60.0 11 0.00023 39.8 4.0 49 336-391 58-106 (243)
160 PF13489 Methyltransf_23: Meth 59.5 11 0.00025 35.4 4.0 39 336-381 21-59 (161)
161 TIGR02072 BioC biotin biosynth 58.5 18 0.00038 36.6 5.4 56 337-397 34-90 (240)
162 PRK08317 hypothetical protein; 58.1 14 0.00031 37.2 4.6 57 336-396 18-78 (241)
163 PF03848 TehB: Tellurite resis 57.8 13 0.00029 37.8 4.2 40 337-383 30-69 (192)
164 PLN02233 ubiquinone biosynthes 57.6 13 0.00028 39.3 4.4 45 337-385 73-117 (261)
165 PF09926 DUF2158: Uncharacteri 57.3 15 0.00033 29.6 3.7 39 189-230 1-39 (53)
166 KOG2187 tRNA uracil-5-methyltr 57.1 5.6 0.00012 45.9 1.6 40 339-385 385-424 (534)
167 TIGR00477 tehB tellurite resis 56.8 15 0.00033 36.9 4.6 42 337-385 30-71 (195)
168 TIGR00438 rrmJ cell division p 56.4 7.6 0.00016 38.7 2.2 51 336-396 31-81 (188)
169 PRK00216 ubiE ubiquinone/menaq 55.6 17 0.00037 36.8 4.7 44 337-387 51-97 (239)
170 PTZ00098 phosphoethanolamine N 55.6 20 0.00044 37.9 5.4 46 336-387 51-96 (263)
171 PRK11088 rrmA 23S rRNA methylt 54.9 20 0.00043 38.0 5.2 58 337-397 85-143 (272)
172 PRK00107 gidB 16S rRNA methylt 54.7 16 0.00036 36.8 4.3 43 338-385 46-88 (187)
173 COG1041 Predicted DNA modifica 54.2 11 0.00023 41.9 3.0 44 336-386 196-239 (347)
174 PLN02672 methionine S-methyltr 53.7 14 0.00029 47.0 4.2 43 339-386 120-162 (1082)
175 PRK06922 hypothetical protein; 53.3 21 0.00046 42.9 5.5 45 337-386 418-462 (677)
176 PF05185 PRMT5: PRMT5 arginine 53.2 14 0.00029 42.6 3.9 62 337-399 186-253 (448)
177 TIGR02081 metW methionine bios 53.1 22 0.00048 35.5 5.0 52 338-397 14-65 (194)
178 PTZ00146 fibrillarin; Provisio 52.4 24 0.00053 38.3 5.4 40 336-379 131-170 (293)
179 PF03291 Pox_MCEL: mRNA cappin 52.2 14 0.00031 40.7 3.8 43 337-385 62-104 (331)
180 PRK13699 putative methylase; P 51.7 18 0.00038 37.7 4.1 42 337-385 163-204 (227)
181 PRK14103 trans-aconitate 2-met 50.6 24 0.00051 36.9 4.9 56 336-398 28-83 (255)
182 PRK00312 pcm protein-L-isoaspa 50.3 18 0.00039 36.6 3.9 45 336-387 77-121 (212)
183 COG0030 KsgA Dimethyladenosine 47.3 28 0.0006 37.2 4.8 52 338-396 31-85 (259)
184 PF01209 Ubie_methyltran: ubiE 47.2 26 0.00057 36.6 4.6 57 336-398 46-109 (233)
185 PLN02476 O-methyltransferase 46.8 39 0.00085 36.5 5.9 61 336-400 117-183 (278)
186 PRK13942 protein-L-isoaspartat 45.4 25 0.00055 35.9 4.1 45 336-386 75-121 (212)
187 PRK04457 spermidine synthase; 45.3 45 0.00097 35.4 6.1 58 338-400 67-130 (262)
188 COG3963 Phospholipid N-methylt 45.2 47 0.001 33.5 5.6 67 335-405 46-112 (194)
189 TIGR01444 fkbM_fam methyltrans 44.7 29 0.00062 32.4 4.1 42 340-386 1-42 (143)
190 COG2242 CobL Precorrin-6B meth 44.6 50 0.0011 33.6 5.9 60 336-400 33-97 (187)
191 PF02254 TrkA_N: TrkA-N domain 44.5 48 0.001 29.8 5.4 51 344-399 2-52 (116)
192 PRK15068 tRNA mo(5)U34 methylt 44.1 29 0.00064 38.0 4.6 56 337-398 122-183 (322)
193 PRK10708 hypothetical protein; 44.0 54 0.0012 26.9 4.8 43 190-233 2-51 (62)
194 COG3897 Predicted methyltransf 43.6 11 0.00025 38.6 1.2 45 336-386 78-122 (218)
195 PRK09496 trkA potassium transp 42.8 37 0.0008 38.3 5.3 53 344-399 235-287 (453)
196 PF01728 FtsJ: FtsJ-like methy 42.6 20 0.00043 35.3 2.7 50 337-396 23-72 (181)
197 PRK11705 cyclopropane fatty ac 42.6 36 0.00079 38.2 5.1 46 337-388 167-212 (383)
198 TIGR00452 methyltransferase, p 40.3 43 0.00093 36.7 5.1 57 336-398 120-182 (314)
199 TIGR03438 probable methyltrans 39.5 41 0.00089 36.3 4.8 58 338-399 64-127 (301)
200 PRK05785 hypothetical protein; 39.3 33 0.00072 35.5 3.9 41 338-385 52-93 (226)
201 PF10781 DSRB: Dextransucrase 38.1 74 0.0016 26.1 4.7 43 190-233 2-51 (62)
202 COG2230 Cfa Cyclopropane fatty 38.0 41 0.0009 36.4 4.4 44 336-385 71-114 (283)
203 PRK13943 protein-L-isoaspartat 37.9 40 0.00087 37.1 4.4 55 337-396 80-140 (322)
204 TIGR00740 methyltransferase, p 37.1 62 0.0013 33.4 5.5 59 337-398 53-117 (239)
205 PF02390 Methyltransf_4: Putat 36.9 64 0.0014 32.7 5.4 56 340-400 20-80 (195)
206 PLN02490 MPBQ/MSBQ methyltrans 36.8 55 0.0012 36.3 5.3 58 336-398 112-171 (340)
207 PRK14121 tRNA (guanine-N(7)-)- 35.5 72 0.0016 36.1 6.0 59 337-400 122-185 (390)
208 PLN02336 phosphoethanolamine N 35.2 44 0.00096 38.3 4.4 44 337-386 266-309 (475)
209 PF08241 Methyltransf_11: Meth 35.1 51 0.0011 27.7 3.8 49 342-397 1-52 (95)
210 KOG1270 Methyltransferases [Co 34.9 37 0.00079 36.4 3.3 41 338-385 90-130 (282)
211 PF11717 Tudor-knot: RNA bindi 34.6 89 0.0019 25.1 4.9 36 189-226 1-36 (55)
212 KOG1122 tRNA and rRNA cytosine 34.0 38 0.00082 38.6 3.4 62 334-399 238-304 (460)
213 cd05834 HDGF_related The PWWP 33.4 64 0.0014 28.3 4.1 43 188-231 2-44 (83)
214 PF11302 DUF3104: Protein of u 33.1 64 0.0014 28.1 3.9 28 189-216 6-39 (75)
215 KOG0739 AAA+-type ATPase [Post 33.1 1.7E+02 0.0037 32.3 7.9 94 490-583 131-241 (439)
216 PRK11873 arsM arsenite S-adeno 32.1 75 0.0016 33.4 5.3 58 336-397 76-138 (272)
217 PF08940 DUF1918: Domain of un 31.9 69 0.0015 26.5 3.7 40 188-228 2-42 (58)
218 COG1743 Adenine-specific DNA m 31.7 44 0.00095 40.7 3.6 64 336-406 89-156 (875)
219 cd05291 HicDH_like L-2-hydroxy 31.7 3.7E+02 0.0079 29.0 10.6 34 346-382 6-41 (306)
220 PF07021 MetW: Methionine bios 31.6 89 0.0019 32.0 5.3 55 338-400 14-68 (193)
221 PF10383 Clr2: Transcription-s 30.4 1.8E+02 0.0039 28.0 7.0 51 177-228 2-70 (139)
222 TIGR01228 hutU urocanate hydra 30.1 90 0.002 36.2 5.6 64 341-408 159-222 (545)
223 COG4014 Uncharacterized protei 29.9 1E+02 0.0023 27.6 4.7 38 190-232 10-51 (97)
224 PF13651 EcoRI_methylase: Aden 29.6 1.1E+02 0.0024 33.7 6.0 79 487-602 111-191 (336)
225 PF00467 KOW: KOW motif; Inte 28.4 97 0.0021 22.0 3.7 26 191-217 1-26 (32)
226 cd05835 Dnmt3b_related The PWW 28.0 69 0.0015 28.2 3.5 40 189-229 1-43 (87)
227 PF13679 Methyltransf_32: Meth 26.7 90 0.002 29.6 4.3 48 335-385 23-72 (141)
228 PF01175 Urocanase: Urocanase; 26.0 1.2E+02 0.0027 35.3 5.8 62 342-408 159-221 (546)
229 PRK05414 urocanate hydratase; 26.0 1.2E+02 0.0026 35.5 5.6 63 342-408 169-231 (556)
230 PF03807 F420_oxidored: NADP o 25.1 1.1E+02 0.0025 26.4 4.3 41 345-387 4-47 (96)
231 smart00828 PKS_MT Methyltransf 24.4 98 0.0021 31.3 4.4 42 340-387 2-44 (224)
232 COG4671 Predicted glycosyl tra 23.7 1.1E+02 0.0023 34.4 4.6 57 521-578 42-117 (400)
233 COG0569 TrkA K+ transport syst 23.6 1.1E+02 0.0024 31.8 4.5 51 345-398 5-55 (225)
234 PRK13256 thiopurine S-methyltr 22.7 1.3E+02 0.0027 31.6 4.8 40 338-384 44-83 (226)
235 PTZ00112 origin recognition co 22.2 1.3E+02 0.0029 37.8 5.4 57 177-234 442-522 (1164)
236 PF01488 Shikimate_DH: Shikima 21.4 1.2E+02 0.0025 28.7 3.9 54 344-399 16-69 (135)
237 PF02737 3HCDH_N: 3-hydroxyacy 21.4 1.2E+02 0.0025 30.3 4.1 37 346-385 5-41 (180)
238 PLN02366 spermidine synthase 21.1 1.9E+02 0.0041 31.6 6.0 59 337-400 91-158 (308)
239 smart00739 KOW KOW (Kyprides, 20.7 1.5E+02 0.0032 19.7 3.3 25 189-214 2-26 (28)
240 COG5475 Uncharacterized small 20.6 1.9E+02 0.004 23.9 4.2 38 187-232 3-40 (60)
241 PRK11783 rlmL 23S rRNA m(2)G24 20.4 1.2E+02 0.0026 36.9 4.7 30 369-398 259-294 (702)
No 1
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=100.00 E-value=4e-43 Score=374.39 Aligned_cols=168 Identities=39% Similarity=0.694 Sum_probs=141.2
Q ss_pred cceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCCCceeecCchHHHHHHHHHHHHhhhccccccc
Q 047980 339 VKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHPETEVRNESAEDFLTLLREWEKLCISFSLIAR 418 (718)
Q Consensus 339 ~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p~~~v~~~~~~~~l~~lke~~~l~~~~~~~~~ 418 (718)
+++||||||||||++|| +++||+++ ||+|+|+.|++||++||| .+...||.++-
T Consensus 1 ~~~~dlFsG~Gg~~~g~----~~ag~~~~--~a~e~~~~a~~~y~~N~~--~~~~~Di~~~~------------------ 54 (335)
T PF00145_consen 1 MKVIDLFSGIGGFSLGL----EQAGFEVV--WAVEIDPDACETYKANFP--EVICGDITEID------------------ 54 (335)
T ss_dssp EEEEEET-TTTHHHHHH----HHTTEEEE--EEEESSHHHHHHHHHHHT--EEEESHGGGCH------------------
T ss_pred CcEEEEccCccHHHHHH----HhcCcEEE--EEeecCHHHHHhhhhccc--ccccccccccc------------------
Confidence 58999999999999999 88998887 999999999999999999 66666664320
Q ss_pred CCccccccccCCCCCCCcCCCCCCCCCCCCCchhHHHHHHHHhHhcCCchhhhcccceeeEeeccCCCCCCCCccccccc
Q 047980 419 KDPQQQLYSFNDDGESEEDDDNGNVEDESEDDSEIFEVEKILKICYGDPKEIKKRGLYLKVRWRNYGPSEDTWEPIEGLS 498 (718)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~i~~g~p~~~~~~~l~~~~~w~~~~~~~d~w~~~~~~~ 498 (718)
. . .
T Consensus 55 --------------------------------~-----~---~------------------------------------- 57 (335)
T PF00145_consen 55 --------------------------------P-----S---D------------------------------------- 57 (335)
T ss_dssp --------------------------------H-----H---H-------------------------------------
T ss_pred --------------------------------c-----c---c-------------------------------------
Confidence 0 0 0
Q ss_pred ccccchhhhhhcccccccCCCCCCccEEEecCCCCccccccccCCCCCCcccchhhHHHHHHHHhhhcCCcEEEEecchh
Q 047980 499 NCGEKIKEFVTHGFKSKILPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLKPKFVLMENVVD 578 (718)
Q Consensus 499 ~~~~~i~e~~~~~~~~~l~p~~~~vDll~gGPPCQ~fS~ag~~r~~~~~~~D~rn~L~~~~~riv~~~kPk~~v~ENV~g 578 (718)
+++++|||+||||||+||.+|+++ +.+|+|+.||++|+|+|+.++|++||||||+|
T Consensus 58 --------------------l~~~~D~l~ggpPCQ~fS~ag~~~----~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~ 113 (335)
T PF00145_consen 58 --------------------LPKDVDLLIGGPPCQGFSIAGKRK----GFDDPRNSLFFEFLRIVKELKPKYFLLENVPG 113 (335)
T ss_dssp --------------------HHHT-SEEEEE---TTTSTTSTHH----CCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGG
T ss_pred --------------------ccccceEEEeccCCceEecccccc----ccccccchhhHHHHHHHhhccceEEEecccce
Confidence 012589999999999999999744 46899999999999999999999999999999
Q ss_pred hhhcccchHHHHHHHHHHhCCceEEEEEEeccccCCCCCCcEEEEEEecCCCCCC
Q 047980 579 IVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFRMRVFLWGAQPTEKLP 633 (718)
Q Consensus 579 ll~~~~g~~~~~i~~~L~~lGY~v~~~vLnA~dyGvPQ~R~R~fivg~r~~~~~p 633 (718)
|++..++..++.+++.|.++||++.+.+|||++|||||+|+|+||||++++...+
T Consensus 114 l~~~~~~~~~~~i~~~l~~lGY~v~~~vlna~~yGvPQ~R~R~fivg~r~~~~~~ 168 (335)
T PF00145_consen 114 LLSSKNGEVFKEILEELEELGYNVQWRVLNAADYGVPQNRERVFIVGIRKDLPLP 168 (335)
T ss_dssp GGTGGGHHHHHHHHHHHHHTTEEEEEEEEEGGGGTSSBE-EEEEEEEEEGGG--T
T ss_pred eeccccccccccccccccccceeehhccccHhhCCCCCceeeEEEEEECCCCCcc
Confidence 9999888999999999999999999999999999999999999999999987653
No 2
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.3e-40 Score=357.81 Aligned_cols=173 Identities=28% Similarity=0.487 Sum_probs=149.7
Q ss_pred eeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCCCceeecCchHHHHHHHHHHHHhhhcccccccCC
Q 047980 341 LLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHPETEVRNESAEDFLTLLREWEKLCISFSLIARKD 420 (718)
Q Consensus 341 ~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p~~~v~~~~~~~~l~~lke~~~l~~~~~~~~~~~ 420 (718)
+||||||||||++|| +++|++++ ||+|+|+.|++||+.|||+ .+.+.||.++.
T Consensus 1 vidLF~G~GG~~~Gl----~~aG~~~~--~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~-------------------- 53 (315)
T TIGR00675 1 FIDLFAGIGGIRLGF----EQAGFKCV--FASEIDKYAQKTYEANFGN-KVPFGDITKIS-------------------- 53 (315)
T ss_pred CEEEecCccHHHHHH----HHcCCeEE--EEEeCCHHHHHHHHHhCCC-CCCccChhhhh--------------------
Confidence 689999999999999 78999987 9999999999999999998 55556664320
Q ss_pred ccccccccCCCCCCCcCCCCCCCCCCCCCchhHHHHHHHHhHhcCCchhhhcccceeeEeeccCCCCCCCCccccccccc
Q 047980 421 PQQQLYSFNDDGESEEDDDNGNVEDESEDDSEIFEVEKILKICYGDPKEIKKRGLYLKVRWRNYGPSEDTWEPIEGLSNC 500 (718)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~i~~g~p~~~~~~~l~~~~~w~~~~~~~d~w~~~~~~~~~ 500 (718)
.
T Consensus 54 ~------------------------------------------------------------------------------- 54 (315)
T TIGR00675 54 P------------------------------------------------------------------------------- 54 (315)
T ss_pred h-------------------------------------------------------------------------------
Confidence 0
Q ss_pred ccchhhhhhcccccccCCCCCCccEEEecCCCCccccccccCCCCCCcccchhhHHHHHHHHhhhcCCcEEEEecchhhh
Q 047980 501 GEKIKEFVTHGFKSKILPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLKPKFVLMENVVDIV 580 (718)
Q Consensus 501 ~~~i~e~~~~~~~~~l~p~~~~vDll~gGPPCQ~fS~ag~~r~~~~~~~D~rn~L~~~~~riv~~~kPk~~v~ENV~gll 580 (718)
. . .+++|||+||||||+||.+|+++ +.+|+|+.|+++|+++|+.++|++||||||+||+
T Consensus 55 ----~---------~----~~~~dvl~gg~PCq~fS~ag~~~----~~~d~r~~L~~~~~r~i~~~~P~~~v~ENV~~l~ 113 (315)
T TIGR00675 55 ----S---------D----IPDFDILLGGFPCQPFSIAGKRK----GFEDTRGTLFFEIVRILKEKKPKFFLLENVKGLV 113 (315)
T ss_pred ----h---------h----CCCcCEEEecCCCcccchhcccC----CCCCchhhHHHHHHHHHhhcCCCEEEeeccHHHH
Confidence 0 0 03689999999999999999754 4578999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHhCCceEEEEEEeccccCCCCCCcEEEEEEec-CCCC-CCCCCCCcc
Q 047980 581 KFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFRMRVFLWGAQ-PTEK-LPPYALPTH 640 (718)
Q Consensus 581 ~~~~g~~~~~i~~~L~~lGY~v~~~vLnA~dyGvPQ~R~R~fivg~r-~~~~-~p~~P~PtH 640 (718)
+..+|..++.++..|+++||.+.+.+|||++|||||+|+|+||||++ .+.. ...||.|||
T Consensus 114 ~~~~~~~~~~i~~~l~~~GY~v~~~~l~a~dyGvPQ~R~R~f~ia~r~~~~~~~~~~p~~~~ 175 (315)
T TIGR00675 114 SHDKGRTFKVIIETLEELGYKVYYKVLNAKDFGVPQNRERIYIVGFRDFDDKLNFEFPKPIY 175 (315)
T ss_pred hcccchHHHHHHHHHHhCCCEEEEEEEcHHHCCCCCCccEEEEEEEeCCCcCcCCCCCCCcc
Confidence 99888899999999999999999999999999999999999999999 4432 245676665
No 3
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=100.00 E-value=3.1e-40 Score=348.72 Aligned_cols=169 Identities=28% Similarity=0.505 Sum_probs=147.7
Q ss_pred cceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCCCceeecCchHHHHHHHHHHHHhhhccccccc
Q 047980 339 VKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHPETEVRNESAEDFLTLLREWEKLCISFSLIAR 418 (718)
Q Consensus 339 ~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p~~~v~~~~~~~~l~~lke~~~l~~~~~~~~~ 418 (718)
++++|||||||||++|| +++|++++ ||+|+|+.|++||++|||++ +++.|+.++ .
T Consensus 1 ~~v~dLFsG~Gg~~~gl----~~~G~~~v--~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~-----------------~- 55 (275)
T cd00315 1 LRVIDLFAGIGGFRLGL----EKAGFEIV--AANEIDKSAAETYEANFPNK-LIEGDITKI-----------------D- 55 (275)
T ss_pred CcEEEEccCcchHHHHH----HHcCCEEE--EEEeCCHHHHHHHHHhCCCC-CccCccccC-----------------c-
Confidence 57999999999999999 78999877 89999999999999999986 444444321 0
Q ss_pred CCccccccccCCCCCCCcCCCCCCCCCCCCCchhHHHHHHHHhHhcCCchhhhcccceeeEeeccCCCCCCCCccccccc
Q 047980 419 KDPQQQLYSFNDDGESEEDDDNGNVEDESEDDSEIFEVEKILKICYGDPKEIKKRGLYLKVRWRNYGPSEDTWEPIEGLS 498 (718)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~i~~g~p~~~~~~~l~~~~~w~~~~~~~d~w~~~~~~~ 498 (718)
+
T Consensus 56 ------------------------------------------------~------------------------------- 56 (275)
T cd00315 56 ------------------------------------------------E------------------------------- 56 (275)
T ss_pred ------------------------------------------------h-------------------------------
Confidence 0
Q ss_pred ccccchhhhhhcccccccCCCCCCccEEEecCCCCccccccccCCCCCCcccchhhHHHHHHHHhhhcCCcEEEEecchh
Q 047980 499 NCGEKIKEFVTHGFKSKILPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLKPKFVLMENVVD 578 (718)
Q Consensus 499 ~~~~~i~e~~~~~~~~~l~p~~~~vDll~gGPPCQ~fS~ag~~r~~~~~~~D~rn~L~~~~~riv~~~kPk~~v~ENV~g 578 (718)
. . ..+++|+|+||||||+||.+|+++ +.+|+|+.|+.+|+++|+.++|++|+||||+|
T Consensus 57 ------~---------~---~~~~~D~l~~gpPCq~fS~ag~~~----~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~g 114 (275)
T cd00315 57 ------K---------D---FIPDIDLLTGGFPCQPFSIAGKRK----GFEDTRGTLFFEIIRILKEKKPKYFLLENVKG 114 (275)
T ss_pred ------h---------h---cCCCCCEEEeCCCChhhhHHhhcC----CCCCchHHHHHHHHHHHHhcCCCEEEEEcCcc
Confidence 0 0 014699999999999999999743 45889999999999999999999999999999
Q ss_pred hhhcccchHHHHHHHHHHhCCceEEEEEEeccccCCCCCCcEEEEEEecCCCCCC
Q 047980 579 IVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFRMRVFLWGAQPTEKLP 633 (718)
Q Consensus 579 ll~~~~g~~~~~i~~~L~~lGY~v~~~vLnA~dyGvPQ~R~R~fivg~r~~~~~p 633 (718)
|++..++..++.+++.|.++||++.+.+|||++||+||+|+|+||||++++...+
T Consensus 115 ~~~~~~~~~~~~i~~~l~~~GY~~~~~~l~a~~~GvPQ~R~R~~~ia~~~~~~~~ 169 (275)
T cd00315 115 LLTHDNGNTLKVILNTLEELGYNVYWKLLNASDYGVPQNRERVFIIGIRKDLILN 169 (275)
T ss_pred hhccCchHHHHHHHHHHHhCCcEEEEEEEEHHHcCCCCCCcEEEEEEEeCCCCcc
Confidence 9998888899999999999999999999999999999999999999999986643
No 4
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.6e-40 Score=359.04 Aligned_cols=167 Identities=32% Similarity=0.566 Sum_probs=147.6
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCCCceeecCchHHHHHHHHHHHHhhhccccc
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHPETEVRNESAEDFLTLLREWEKLCISFSLI 416 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p~~~v~~~~~~~~l~~lke~~~l~~~~~~~ 416 (718)
..+++|||||||||+++|| +.+||+++ ||+|||+.|++||++|||.+.+...|+..+.
T Consensus 2 ~~~~~idLFsG~GG~~lGf----~~agf~~~--~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~---------------- 59 (328)
T COG0270 2 EKMKVIDLFAGIGGLSLGF----EEAGFEIV--FANEIDPPAVATYKANFPHGDIILGDIKELD---------------- 59 (328)
T ss_pred CCceEEeeccCCchHHHHH----HhcCCeEE--EEEecCHHHHHHHHHhCCCCceeechHhhcC----------------
Confidence 4689999999999999999 88999987 9999999999999999997666555553320
Q ss_pred ccCCccccccccCCCCCCCcCCCCCCCCCCCCCchhHHHHHHHHhHhcCCchhhhcccceeeEeeccCCCCCCCCccccc
Q 047980 417 ARKDPQQQLYSFNDDGESEEDDDNGNVEDESEDDSEIFEVEKILKICYGDPKEIKKRGLYLKVRWRNYGPSEDTWEPIEG 496 (718)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~i~~g~p~~~~~~~l~~~~~w~~~~~~~d~w~~~~~ 496 (718)
.+
T Consensus 60 ----------------------------------~~-------------------------------------------- 61 (328)
T COG0270 60 ----------------------------------GE-------------------------------------------- 61 (328)
T ss_pred ----------------------------------hh--------------------------------------------
Confidence 00
Q ss_pred ccccccchhhhhhcccccccCCCCC-CccEEEecCCCCccccccccCCCCCCcccchhhHHHHHHHHhhhcCCcEEEEec
Q 047980 497 LSNCGEKIKEFVTHGFKSKILPLPG-DVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLKPKFVLMEN 575 (718)
Q Consensus 497 ~~~~~~~i~e~~~~~~~~~l~p~~~-~vDll~gGPPCQ~fS~ag~~r~~~~~~~D~rn~L~~~~~riv~~~kPk~~v~EN 575 (718)
. ..+ ++|+|+||||||+||.||++ ++.+|+|+.|+++|+|+|..++|++|||||
T Consensus 62 ------~---------------~~~~~~DvligGpPCQ~FS~aG~r----~~~~D~R~~L~~~~~r~I~~~~P~~fv~EN 116 (328)
T COG0270 62 ------A---------------LRKSDVDVLIGGPPCQDFSIAGKR----RGYDDPRGSLFLEFIRLIEQLRPKFFVLEN 116 (328)
T ss_pred ------h---------------ccccCCCEEEeCCCCcchhhcCcc----cCCcCccceeeHHHHHHHHhhCCCEEEEec
Confidence 0 012 79999999999999999975 357999999999999999999999999999
Q ss_pred chhhhhcccchHHHHHHHHHHhCCceEEEEEEeccccCCCCCCcEEEEEEecCC
Q 047980 576 VVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFRMRVFLWGAQPT 629 (718)
Q Consensus 576 V~gll~~~~g~~~~~i~~~L~~lGY~v~~~vLnA~dyGvPQ~R~R~fivg~r~~ 629 (718)
|+||++. ++..++.|++.|+++||.+.+.+|||++|||||+|+|+||||++++
T Consensus 117 V~gl~~~-~~~~~~~i~~~L~~~GY~~~~~ilna~dyGvPQ~ReRvfiig~~~~ 169 (328)
T COG0270 117 VKGLLSS-KGQTFDEIKKELEELGYGVEFNILNAADYGVPQSRERVFIVGFRRD 169 (328)
T ss_pred CchHHhc-CchHHHHHHHHHHHcCCcchHheeeHHhcCCCCCccEEEEEEecCc
Confidence 9999998 7889999999999999999999999999999999999999999874
No 5
>PRK10458 DNA cytosine methylase; Provisional
Probab=100.00 E-value=6.6e-38 Score=350.25 Aligned_cols=191 Identities=24% Similarity=0.368 Sum_probs=151.6
Q ss_pred CccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC---CCceeecCchHHHHHHHHHHHHhhh
Q 047980 335 QKMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH---PETEVRNESAEDFLTLLREWEKLCI 411 (718)
Q Consensus 335 ~~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~---p~~~v~~~~~~~~l~~lke~~~l~~ 411 (718)
....+++||||||||||++|| +.+|++++ ||+|+|+.|++||++|| |++.+++.||.++.
T Consensus 85 ~~~~~~~iDLFsGiGGl~lGf----e~aG~~~v--~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~----------- 147 (467)
T PRK10458 85 PHYAFRFIDLFAGIGGIRRGF----EAIGGQCV--FTSEWNKHAVRTYKANWYCDPATHRFNEDIRDIT----------- 147 (467)
T ss_pred cCCCceEEEeCcCccHHHHHH----HHcCCEEE--EEEechHHHHHHHHHHcCCCCccceeccChhhCc-----------
Confidence 345799999999999999999 78999877 99999999999999998 66777777775531
Q ss_pred cccccccCCccccccccCCCCCCCcCCCCCCCCCCCCCchhHHHHHHHHhHhcCCchhhhcccceeeEeeccCCCCCCCC
Q 047980 412 SFSLIARKDPQQQLYSFNDDGESEEDDDNGNVEDESEDDSEIFEVEKILKICYGDPKEIKKRGLYLKVRWRNYGPSEDTW 491 (718)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~i~~g~p~~~~~~~l~~~~~w~~~~~~~d~w 491 (718)
.... . ..... .+..
T Consensus 148 ------~~~~-------------------~------~~~~~-----~~~~------------------------------ 161 (467)
T PRK10458 148 ------LSHK-------------------E------GVSDE-----EAAE------------------------------ 161 (467)
T ss_pred ------cccc-------------------c------ccchh-----hhhh------------------------------
Confidence 0000 0 00000 0000
Q ss_pred cccccccccccchhhhhhcccccccCCCCCCccEEEecCCCCccccccccCCCC----CCc-ccchhhHHHHHHHHhhhc
Q 047980 492 EPIEGLSNCGEKIKEFVTHGFKSKILPLPGDVDVICGGPPCQGVSGFNRFRNKD----NPL-ADEKNKQLIVFMDIVDFL 566 (718)
Q Consensus 492 ~~~~~~~~~~~~i~e~~~~~~~~~l~p~~~~vDll~gGPPCQ~fS~ag~~r~~~----~~~-~D~rn~L~~~~~riv~~~ 566 (718)
. +....+++|||+||||||+||.+|+.+... .+. +|+|+.||++|+|+|+.+
T Consensus 162 ---------------~--------~~~~~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~rii~~~ 218 (467)
T PRK10458 162 ---------------H--------IRQHIPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVARIIDAK 218 (467)
T ss_pred ---------------h--------hhccCCCCCEEEEcCCCCccchhcccccccccccccccCCccccHHHHHHHHHHHh
Confidence 0 000114689999999999999999754211 233 478999999999999999
Q ss_pred CCcEEEEecchhhhhcccchHHHHHHHHHHhCCceEE---------EEEEeccccCCCCCCcEEEEEEecCCCCC
Q 047980 567 KPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVR---------MGMMAAGAYGLPQFRMRVFLWGAQPTEKL 632 (718)
Q Consensus 567 kPk~~v~ENV~gll~~~~g~~~~~i~~~L~~lGY~v~---------~~vLnA~dyGvPQ~R~R~fivg~r~~~~~ 632 (718)
+|++||||||+||+++.+|..++.|++.|.++||.|. +.||||.+| |||+|+|+||||++++..+
T Consensus 219 kPk~fvlENV~gl~s~~~g~~f~~i~~~L~~lGY~v~~~~~~g~~~~~vlna~~f-VPQ~R~RvfiVg~r~~~~~ 292 (467)
T PRK10458 219 RPAIFVLENVKNLKSHDKGKTFRIIMQTLDELGYDVADAEDNGPDDPKIIDGKHF-LPQHRERIVLVGFRRDLNL 292 (467)
T ss_pred CCCEEEEeCcHhhhcccccHHHHHHHHHHHHcCCeEEeccccCcccceEeehhhC-CCccCcEEEEEEEeCCccc
Confidence 9999999999999999989999999999999999995 689999999 9999999999999987643
No 6
>cd04716 BAH_plantDCM_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=100.00 E-value=9.5e-33 Score=256.90 Aligned_cols=122 Identities=57% Similarity=0.980 Sum_probs=116.0
Q ss_pred CEEEEecCCeEEEecCCCCCCeEEEEeEEeecCCCceEEEEEEEEecccCccccccccCCCCceEeeCCccccccccccc
Q 047980 185 GHITYDLFDDAHVKAESGEEDYICKIVEMFEAVDGTPYFTAQWYYRARDTVIESNAHLIDQRRVFFSEIQNDNPLECLVK 264 (718)
Q Consensus 185 G~~~y~vGD~VyV~~~~~~p~yIgrI~~iwe~~~g~~~v~v~WFyRpeET~~~~~~~~~d~rELF~S~~~d~~~l~~I~g 264 (718)
|+ +|++||+|||.+++++|+|||||++||++.+|..+|+|+|||||+||+++++.+.++++|||+|+|+|+||++||+|
T Consensus 1 g~-~~~lgD~V~v~~~~~~~~yi~rI~~i~e~~~g~~~~~v~WyyRpeet~~~r~~~~~~~rEvFlS~~~D~~pl~~I~~ 79 (122)
T cd04716 1 GI-TYNLGDDAYVQGGEGEEPFICKITEFFEGTDGKTYFTAQWFYRAEDTVIERQATNHDKKRVFYSEIKNDNPLDCLIS 79 (122)
T ss_pred Cc-EEEcCCEEEEECCCCCCCEEEEEEEEEEcCCCceEEEEEEEEcHHHhccccccccCCCceEEEecccCccchhheee
Confidence 56 89999999999999899999999999999999999999999999999988878899999999999999999999999
Q ss_pred eeEEEeeCCccchhhhhccCCCCcEEEeeeeeCCCCeeeCCCc
Q 047980 265 KLNIARVPLNIDLEAKKLAIPHCDYYCDMMYLLPYSTFFSLPP 307 (718)
Q Consensus 265 KC~V~~~~~~~~~~~~~~~~~~~dfyc~~~Yd~~~~~F~~lp~ 307 (718)
||+|++++++..++.+....+.+||||+|.|+..+++|.+||+
T Consensus 80 Kc~V~~~~~~~~~~~~~~~~~~~df~c~~~Y~~~~~tF~~~~~ 122 (122)
T cd04716 80 KVKILQVPPNVGTKRKKPNSEKCDYYYDMEYCVPYSTFQTLRN 122 (122)
T ss_pred eeEEEEeCCCCCcccccccCCCceEEEeeEeccchhheEeCCC
Confidence 9999999999988777788889999999999999999999984
No 7
>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.96 E-value=8.4e-30 Score=253.70 Aligned_cols=167 Identities=22% Similarity=0.362 Sum_probs=129.7
Q ss_pred EEECCEEEEecCCeEEEecC------------------CCCCCeEEEEeEEeecCCC------ceEEEEEEEEecccCcc
Q 047980 181 AEVDGHITYDLFDDAHVKAE------------------SGEEDYICKIVEMFEAVDG------TPYFTAQWYYRARDTVI 236 (718)
Q Consensus 181 ~~v~G~~~y~vGD~VyV~~~------------------~~~p~yIgrI~~iwe~~~g------~~~v~v~WFyRpeET~~ 236 (718)
+.++|+ +|+|||+|||.++ +.+|++||||.+|++.+++ ..+|+|+|||||+||.+
T Consensus 1 f~~~Gv-~Y~vgD~VYv~p~~f~~~~~~~~~~~~G~N~~~~p~~I~qI~ei~~~k~~~~~~~~~~~vrVrwFYRPEdt~~ 79 (202)
T cd04708 1 FVYDGV-TYSVGDFLYVSPDAFAEEERERATFKAGRNVGLKAFVVCQVLEIVVEKESKQADVASTQVKVRRFYRPEDVSP 79 (202)
T ss_pred CcCCCE-EEecCCeEEECcccccccccccccccccccCCCCCcEEEEEEEEEecccCCCCCCcceEEEEEEEechhhcCc
Confidence 357898 9999999999998 4579999999999987665 67999999999999985
Q ss_pred ccccccCCCCceEeeCCccccccccccceeEEEeeCCccchhhhhccCCCCcEEEeeeeeCCCCeeeCCCccCc-cccCC
Q 047980 237 ESNAHLIDQRRVFFSEIQNDNPLECLVKKLNIARVPLNIDLEAKKLAIPHCDYYCDMMYLLPYSTFFSLPPENK-RVSSE 315 (718)
Q Consensus 237 ~~~~~~~d~rELF~S~~~d~~~l~~I~gKC~V~~~~~~~~~~~~~~~~~~~dfyc~~~Yd~~~~~F~~lp~e~~-~~~s~ 315 (718)
...+..|.+|||+|++.+++|+++|.|||+|++.....++. ......++|||+..||+.++.|+.||+..+ ...|-
T Consensus 80 -~~~y~sd~rely~Sde~~~~~~~~I~GKC~V~~~~d~~~~~--~~~~~~~~Ffc~~~Yd~~tg~f~~lP~~~~~~~~~~ 156 (202)
T cd04708 80 -EKAYASDIREVYYSEDTLTVPVEAVEGKCEVRKKSDLPDSD--APVIFEHVFFCELLYDPAKGSLKQLPPNIKEEAYST 156 (202)
T ss_pred -ccceecCceeEEEeccceeechhHcceEEEEEecCcchhhh--ccccCCCceEEEEEEcCCCCccCCCCchhccccccc
Confidence 44676799999999999999999999999999988766553 233457889999999999999999999987 22221
Q ss_pred CccccccCCCCCcc----------ccCCCCccccceeccccccchh
Q 047980 316 TSSTISSDVDANEC----------EVGEPQKMDVKLLDLYSGCGAM 351 (718)
Q Consensus 316 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~lDLFsG~Gg~ 351 (718)
.............| ....+....|..||+|||||||
T Consensus 157 ~~~~~~~~k~kgkgk~~~~~~~~~~~~~~~~~~LaTLDIFAGCGGL 202 (202)
T cd04708 157 GASDSALRKRKGKGKGDSESDSEAPVKAPKENRLATLDIFAGCGGL 202 (202)
T ss_pred cccccccccCCCCCcCccccccccccccccccccceeeeecccCCC
Confidence 11000000000112 1123456789999999999986
No 8
>cd04713 BAH_plant_3 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.95 E-value=1.9e-27 Score=228.66 Aligned_cols=132 Identities=23% Similarity=0.436 Sum_probs=115.7
Q ss_pred hhcceeeEEEECCEEEEecCCeEEEecCCCCCCeEEEEeEEeecCCCceEEEEEEEEecccCcccccc--ccCCCCceEe
Q 047980 173 QAKCHYMWAEVDGHITYDLFDDAHVKAESGEEDYICKIVEMFEAVDGTPYFTAQWYYRARDTVIESNA--HLIDQRRVFF 250 (718)
Q Consensus 173 ~~r~~Y~s~~v~G~~~y~vGD~VyV~~~~~~p~yIgrI~~iwe~~~g~~~v~v~WFyRpeET~~~~~~--~~~d~rELF~ 250 (718)
++|+||.++.++|. +|+|||||||.++++.++|||+|++||++.+|.++|+|+|||||+||.....+ ..++++|||+
T Consensus 6 ~~~~~y~s~~~dg~-~y~vgD~Vlv~~~~~~~pyI~~I~~i~~~~~~~~~v~V~WFyRpeEi~~~~~~~~~~~~~~ElF~ 84 (146)
T cd04713 6 KKKCHYTSFEKDGN-KYRLEDCVLLVPEDDQKPYIAIIKDIYKQEEGSLKLEVQWLYRPEEIEKKKGGNWKAEDPRELFY 84 (146)
T ss_pred cceeeeeeEEECCE-EEECCCEEEEeCCCCCCCEEEEEEEEEEcCCCCEEEEEEeeECHHHhccccccccccCCCCeEEE
Confidence 68899999999999 99999999999988788899999999999889999999999999999854332 3457899999
Q ss_pred eCCccccccccccceeEEEeeCCccchhhhhccCCCCcEEEeeeeeCCCCeeeCCCcc
Q 047980 251 SEIQNDNPLECLVKKLNIARVPLNIDLEAKKLAIPHCDYYCDMMYLLPYSTFFSLPPE 308 (718)
Q Consensus 251 S~~~d~~~l~~I~gKC~V~~~~~~~~~~~~~~~~~~~dfyc~~~Yd~~~~~F~~lp~e 308 (718)
|+|.|+|+++||+|||+|++++.+.+++. ....+.|||+..||...++|..|-..
T Consensus 85 S~~~d~~~~~~I~gkc~V~~~~~~~~~~~---~~~~~~F~cr~~yD~~~~~~~~~~~~ 139 (146)
T cd04713 85 SFHRDEVPAESVLHPCKVAFVPKGKQIPL---RKGHSGFIVRRVYDNVNKKLWKLTDQ 139 (146)
T ss_pred eCCCCcCCHHHCcceeEEEECCccccCCc---cCCCCeEEEEEEEcCCCCcEeecccc
Confidence 99999999999999999999887776532 12456799999999999999988654
No 9
>cd04714 BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.93 E-value=5.6e-26 Score=212.04 Aligned_cols=115 Identities=19% Similarity=0.257 Sum_probs=98.7
Q ss_pred CEEEEecCCeEEEecCCC-CCCeEEEEeEEeecCCCceEEEEEEEEecccCccccccccCCCCceEeeCCcccccccccc
Q 047980 185 GHITYDLFDDAHVKAESG-EEDYICKIVEMFEAVDGTPYFTAQWYYRARDTVIESNAHLIDQRRVFFSEIQNDNPLECLV 263 (718)
Q Consensus 185 G~~~y~vGD~VyV~~~~~-~p~yIgrI~~iwe~~~g~~~v~v~WFyRpeET~~~~~~~~~d~rELF~S~~~d~~~l~~I~ 263 (718)
|+ +|+|||||||.++++ .++|||||++||++.+|+++|+|+|||||+||..+. .+.++++|||+|+|.|+|++++|.
T Consensus 1 ~~-~~~vGD~V~v~~~~~~~~pyIgrI~~i~e~~~g~~~~~v~WfyrPeEt~~~~-~~~~~~~EvF~S~~~d~~~~~~I~ 78 (121)
T cd04714 1 KE-IIRVGDCVLFKSPGRPSLPYVARIESLWEDPEGNMVVRVKWYYRPEETKGGR-KPNHGEKELFASDHQDENSVQTIE 78 (121)
T ss_pred CC-EEEcCCEEEEeCCCCCCCCEEEEEEEEEEcCCCCEEEEEEEEEcHHHccCcc-cccCCCCceEecCCcccccHHHhC
Confidence 45 899999999999874 788999999999999999999999999999999654 566999999999999999999999
Q ss_pred ceeEEEeeCCccchhhhh-c-cCCCCcEEEeeeeeCCCCe
Q 047980 264 KKLNIARVPLNIDLEAKK-L-AIPHCDYYCDMMYLLPYST 301 (718)
Q Consensus 264 gKC~V~~~~~~~~~~~~~-~-~~~~~dfyc~~~Yd~~~~~ 301 (718)
|||.|++++.+.+..... . .....-|+|++.||+....
T Consensus 79 gkc~V~~~~ey~~~~~~~~~~~~~~d~~~Ce~~yn~~~~~ 118 (121)
T cd04714 79 HKCYVLTFAEYERLARVKKKPQDGVDFYYCAGTYNPDTGM 118 (121)
T ss_pred cccEEEehhHheecccccCCCCcCCCEEEEeccCCCCcCc
Confidence 999999999887754321 1 1234459999999998754
No 10
>cd04760 BAH_Dnmt1_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.93 E-value=1e-25 Score=208.93 Aligned_cols=115 Identities=21% Similarity=0.325 Sum_probs=98.6
Q ss_pred CEEEEecCCeEEEecCC-CCCCeEEEEeEEeecCCCceEEEEEEEEecccCccccccccCCCCceEeeCCcccccccccc
Q 047980 185 GHITYDLFDDAHVKAES-GEEDYICKIVEMFEAVDGTPYFTAQWYYRARDTVIESNAHLIDQRRVFFSEIQNDNPLECLV 263 (718)
Q Consensus 185 G~~~y~vGD~VyV~~~~-~~p~yIgrI~~iwe~~~g~~~v~v~WFyRpeET~~~~~~~~~d~rELF~S~~~d~~~l~~I~ 263 (718)
|. +|++||||+|++++ ++|+|||+|++||++.+|.+||||||||||+||+++.. ++++|||+|++|+++++++|.
T Consensus 1 g~-~i~vGD~V~v~~~~~~~p~~I~rV~~mfe~~~g~k~~h~rWf~Rg~dTVlG~~---~~~kEvFlsd~c~d~~l~~I~ 76 (124)
T cd04760 1 GE-ELEAGDCVSVKPDDPTKPLYIARVTYMWKDSIGGKMFHAHWFCRGSDTVLGET---SDPLELFLVDECEDMALSSIH 76 (124)
T ss_pred CC-EEecCCEEEEecCCCCCCcEEEEEhhheecCCCCcEEEEEEEEECCccccccc---CCCcEEEeecccCCcchHHhe
Confidence 45 89999999999875 78899999999999999999999999999999997764 789999999999999999999
Q ss_pred ceeEEEeeCCccch--------hhhhccCCCCcEEEeeeeeCCCCeee
Q 047980 264 KKLNIARVPLNIDL--------EAKKLAIPHCDYYCDMMYLLPYSTFF 303 (718)
Q Consensus 264 gKC~V~~~~~~~~~--------~~~~~~~~~~dfyc~~~Yd~~~~~F~ 303 (718)
+||+|+.+++..+. +......+...|||++.|+++..+|.
T Consensus 77 ~Kv~V~~~~p~~~w~~~~g~~~~~~~~~ddg~tffyq~~yd~~~arf~ 124 (124)
T cd04760 77 GKVNVIYKAPSENWSMEGGMDEEDEIFEDDGKTFFYQKWYDPECARFE 124 (124)
T ss_pred eeeEEEEeCCCcchhhhcCCCCccccccCCCCeEEEEEeeChhhhccC
Confidence 99999999987442 22222223344999999999988874
No 11
>cd04717 BAH_polybromo BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2. The human polybromo protein (BAF180) is a component of the SWI/SNF chromatin-remodeling complex PBAF. It is thought that polybromo participates in transcriptional regulation. Saccharomyces cerevisiae RSC1 and RSC2 are part of the 15-subunit nucleosome remodeling RSC complex. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.92 E-value=1.6e-25 Score=208.89 Aligned_cols=118 Identities=25% Similarity=0.392 Sum_probs=103.0
Q ss_pred CEEEEecCCeEEEecCCC-CCCeEEEEeEEeecCCCceEEEEEEEEecccCccccccccCCCCceEeeCCcccccccccc
Q 047980 185 GHITYDLFDDAHVKAESG-EEDYICKIVEMFEAVDGTPYFTAQWYYRARDTVIESNAHLIDQRRVFFSEIQNDNPLECLV 263 (718)
Q Consensus 185 G~~~y~vGD~VyV~~~~~-~p~yIgrI~~iwe~~~g~~~v~v~WFyRpeET~~~~~~~~~d~rELF~S~~~d~~~l~~I~ 263 (718)
|. +|++||||||.+++. .++|||||.+||++.+|.++|+|+|||||+||..+ ..+.+.++|||+|++.|+||+++|+
T Consensus 1 g~-~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~~~~Wf~rP~et~~~-~~~~~~~~Evfls~~~d~~~~~~I~ 78 (121)
T cd04717 1 GL-QYRVGDCVYVANPEDPSKPIIFRIERLWKDEDGEKFFFGCWFYRPEETFHE-PTRKFYKNEVFKSPLYETVPVEEIV 78 (121)
T ss_pred CC-EEECCCEEEEeCCCCCCCCEEEEEeEEEECCCCCEEEEEEEEeChHHccCC-CccccccCceEEcCccccccHHHhc
Confidence 45 899999999999875 77899999999999999999999999999999844 4567899999999999999999999
Q ss_pred ceeEEEeeCCccchhhhhccCCCCc-EEEeeeeeCCCCeeeCCC
Q 047980 264 KKLNIARVPLNIDLEAKKLAIPHCD-YYCDMMYLLPYSTFFSLP 306 (718)
Q Consensus 264 gKC~V~~~~~~~~~~~~~~~~~~~d-fyc~~~Yd~~~~~F~~lp 306 (718)
|||+|++.+.+.+.... ....+| |||++.|+...+.|++|.
T Consensus 79 ~kc~Vl~~~~y~~~~p~--~~~~~dvy~ce~~y~~~~~~~~~~k 120 (121)
T cd04717 79 GKCAVMDVKDYIKGRPT--EISEEDVYVCESRYNESAKSFKKIK 120 (121)
T ss_pred CeeEEEehHHHhcCCCC--CCCCCCEEEEeEEECcccccEeccc
Confidence 99999998877765322 223345 889999999999999885
No 12
>cd04709 BAH_MTA BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.92 E-value=2.9e-25 Score=216.36 Aligned_cols=125 Identities=17% Similarity=0.187 Sum_probs=109.8
Q ss_pred EEecCCeEEEecCCCCCCeEEEEeEEeecCCCceEEEEEEEEecccCcccc---------------------ccccCCCC
Q 047980 188 TYDLFDDAHVKAESGEEDYICKIVEMFEAVDGTPYFTAQWYYRARDTVIES---------------------NAHLIDQR 246 (718)
Q Consensus 188 ~y~vGD~VyV~~~~~~p~yIgrI~~iwe~~~g~~~v~v~WFyRpeET~~~~---------------------~~~~~d~r 246 (718)
+|+|||||||.++.+.|+|||||++||++++|.++|+|+|||||+||.... ..+.++.|
T Consensus 3 ~yrvGD~Vy~~~~~~~Py~I~rI~e~~~~~~~~~~vkV~wfYRp~DI~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~r 82 (164)
T cd04709 3 MYRVGDYVYFESSPNNPYLIRRIEELNKTARGHVEAKVVCYYRRRDIPDSLYQLADQHRRELEEKSDDLTPKQRHQLRHR 82 (164)
T ss_pred EEecCCEEEEECCCCCCCEEEEEEEEEeCCCCCEEEEEEEEEChhHccchhhhhcccccccccccccccchhhhhccCcc
Confidence 899999999999988899999999999999999999999999999986321 23456899
Q ss_pred ceEeeCCccccccccccceeEEEeeCCccchhhhhccCCCCcEEEeeeeeCCCCeeeCCCccCccccC
Q 047980 247 RVFFSEIQNDNPLECLVKKLNIARVPLNIDLEAKKLAIPHCDYYCDMMYLLPYSTFFSLPPENKRVSS 314 (718)
Q Consensus 247 ELF~S~~~d~~~l~~I~gKC~V~~~~~~~~~~~~~~~~~~~dfyc~~~Yd~~~~~F~~lp~e~~~~~s 314 (718)
|||+|+|.|.+|+++|+|||.|+++..+.++. ......+.|||+..||+.+++|..-..+++...+
T Consensus 83 ELF~S~~~d~~p~~~IrGKC~V~~~~d~~~l~--~~~~~~d~Ff~~~~YDP~~k~l~~~~geirvg~~ 148 (164)
T cd04709 83 ELFLSRQVETLPATHIRGKCSVTLLNDTESAR--SYLAREDTFFYSLVYDPEQKTLLADQGEIRVGPS 148 (164)
T ss_pred eeEEecccccccHHHeeeeEEEEEehhhhhhh--hccCCCCEEEEEEEECCCCCeecccceeEEecCc
Confidence 99999999999999999999999999887763 3334566799999999999999999999986654
No 13
>smart00439 BAH Bromo adjacent homology domain.
Probab=99.91 E-value=1.2e-24 Score=200.72 Aligned_cols=118 Identities=27% Similarity=0.437 Sum_probs=103.7
Q ss_pred EEecCCeEEEecCC-CCCCeEEEEeEEeecCCCc-eEEEEEEEEecccCccccccccCCCCceEeeCCccccccccccce
Q 047980 188 TYDLFDDAHVKAES-GEEDYICKIVEMFEAVDGT-PYFTAQWYYRARDTVIESNAHLIDQRRVFFSEIQNDNPLECLVKK 265 (718)
Q Consensus 188 ~y~vGD~VyV~~~~-~~p~yIgrI~~iwe~~~g~-~~v~v~WFyRpeET~~~~~~~~~d~rELF~S~~~d~~~l~~I~gK 265 (718)
+|++||+|||.+++ .+++|||+|++||++.+|. ++++|+|||||+||..+. .+.++++|||+|++++++++++|.||
T Consensus 1 ~~~vgd~V~v~~~~~~~~~~i~~I~~i~~~~~~~~~~~~v~Wf~rp~e~~~~~-~~~~~~~Elf~s~~~~~i~~~~I~~k 79 (120)
T smart00439 1 TIRVGDFVLVEPDDADEPYYIGRIEEIFETKKNSEKMVRVRWFYRPEETVLEK-AALFDKNEVFLSDEYDTVPLSDIIGK 79 (120)
T ss_pred CcccCCEEEEeCCCCCCCCEEEEEEEEEECCCCCEEEEEEEEEEChhhccccc-cccCCCcceEEEccCccCChHHeeeE
Confidence 48999999999998 6789999999999999998 899999999999999554 44578999999999999999999999
Q ss_pred eEEEeeCCccchhhhhccCCCCcEEEeeeeeCCCCeeeCCC
Q 047980 266 LNIARVPLNIDLEAKKLAIPHCDYYCDMMYLLPYSTFFSLP 306 (718)
Q Consensus 266 C~V~~~~~~~~~~~~~~~~~~~dfyc~~~Yd~~~~~F~~lp 306 (718)
|+|++.+++............+.|||++.|+..+++|.++|
T Consensus 80 c~V~~~~~~~~~~~~~~~~~~~~f~cr~~yd~~~~~f~~~~ 120 (120)
T smart00439 80 CNVLSKSDYPGLRPEGKIGEPDVFFCESLYDPEKGAFKKLP 120 (120)
T ss_pred EEEEEcchhcccccccCCCCCCeEEEEEEEccccCcccCCC
Confidence 99999998777544333334677999999999999999875
No 14
>cd04370 BAH BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions.
Probab=99.91 E-value=1.4e-24 Score=200.33 Aligned_cols=120 Identities=24% Similarity=0.473 Sum_probs=104.6
Q ss_pred CEEEEecCCeEEEecCCC---CCCeEEEEeEEeecCCCceEEEEEEEEecccCccccccccCCCCceEeeCCcccccccc
Q 047980 185 GHITYDLFDDAHVKAESG---EEDYICKIVEMFEAVDGTPYFTAQWYYRARDTVIESNAHLIDQRRVFFSEIQNDNPLEC 261 (718)
Q Consensus 185 G~~~y~vGD~VyV~~~~~---~p~yIgrI~~iwe~~~g~~~v~v~WFyRpeET~~~~~~~~~d~rELF~S~~~d~~~l~~ 261 (718)
|. +|++||||||.+++. +++|||+|.+||++.+|.++++|+|||||+||..+. ...++++|||+|++++++++++
T Consensus 1 g~-~y~vgd~V~v~~~~~~~~~~~~i~~I~~i~~~~~~~~~~~v~wf~rp~e~~~~~-~~~~~~~Elf~s~~~~~i~v~~ 78 (123)
T cd04370 1 GI-TYEVGDSVYVEPDDSIKSDPPYIARIEELWEDTNGSKQVKVRWFYRPEETPKGL-SPFALRRELFLSDHLDEIPVES 78 (123)
T ss_pred CC-EEecCCEEEEecCCcCCCCCCEEEEEeeeeECCCCCEEEEEEEEEchhHhcccc-ccccccceeEEecCccccCHHH
Confidence 45 899999999999885 888999999999999999999999999999999544 4468899999999999999999
Q ss_pred ccceeEEEeeCCccchhhhhccCCCCcEEEeeeeeCCCCeeeCCC
Q 047980 262 LVKKLNIARVPLNIDLEAKKLAIPHCDYYCDMMYLLPYSTFFSLP 306 (718)
Q Consensus 262 I~gKC~V~~~~~~~~~~~~~~~~~~~dfyc~~~Yd~~~~~F~~lp 306 (718)
|.|||.|++.+++.+..........+.|||++.||..+++|+.+.
T Consensus 79 I~gkc~V~~~~~~~~~~~~~~~~~~~~f~~r~~yd~~~~~fk~~~ 123 (123)
T cd04370 79 IIGKCKVLFVSEFEGLKQRPNKIDTDDFFCRLAYDPTTKEFKALE 123 (123)
T ss_pred hccccEEEechHhhccccccccCCCCeEEEEEEECcCcceEEeCC
Confidence 999999999987766432233445677999999999999998763
No 15
>PF01426 BAH: BAH domain; InterPro: IPR001025 The BAH (bromo-adjacent homology) family contains proteins such as eukaryotic DNA (cytosine-5) methyltransferases IPR001525 from INTERPRO, the origin recognition complex 1 (Orc1) proteins, as well as several proteins involved in transcriptional regulation. The BAH domain appears to act as a protein-protein interaction module specialised in gene silencing, as suggested for example by its interaction within yeast Orc1p with the silent information regulator Sir1p. The BAH module might therefore play an important role by linking DNA methylation, replication and transcriptional regulation [].; GO: 0003677 DNA binding; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 3SWR_A 3PTA_A 1M4Z_A 1ZBX_A ....
Probab=99.91 E-value=1.1e-24 Score=201.01 Aligned_cols=116 Identities=26% Similarity=0.450 Sum_probs=100.1
Q ss_pred EEEecCCeEEEecCC-CCCCeEEEEeEEeecCCCc--eEEEEEEEEecccCccccccccCCCCceEeeCCcccccccccc
Q 047980 187 ITYDLFDDAHVKAES-GEEDYICKIVEMFEAVDGT--PYFTAQWYYRARDTVIESNAHLIDQRRVFFSEIQNDNPLECLV 263 (718)
Q Consensus 187 ~~y~vGD~VyV~~~~-~~p~yIgrI~~iwe~~~g~--~~v~v~WFyRpeET~~~~~~~~~d~rELF~S~~~d~~~l~~I~ 263 (718)
++|++||||||.+++ +.++|||+|++||++.++. ++++|+|||||+||. ..+...++|||+|++++++|+++|.
T Consensus 1 ~~~~vGD~V~v~~~~~~~~~~v~~I~~i~~~~~~~~~~~~~v~Wf~rp~d~~---~~~~~~~~Elf~s~~~~~~~~~~I~ 77 (119)
T PF01426_consen 1 VTYKVGDFVYVKPDDPPEPPYVARIEEIWEDKDGNKEKMVKVRWFYRPEDTS---LGKTFSPRELFLSDHCDDIPVESIR 77 (119)
T ss_dssp EEEETTSEEEEECTSTTSEEEEEEEEEEEEETTTSEEEEEEEEEEEEGGGST---TGGHSCTTEEEEEEEEEEEEGGGEE
T ss_pred CEEeCCCEEEEeCCCCCCCCEEEEEEEEEcCCCCCEEEEEEEEEeECccccc---ccccCCCCEEEEECcEeEEehhhEE
Confidence 489999999999998 7888999999999998888 999999999999993 2344556999999999999999999
Q ss_pred ceeEEEeeCCccchhhhhccCCCCcEEEeeeeeCCCCeeeCCC
Q 047980 264 KKLNIARVPLNIDLEAKKLAIPHCDYYCDMMYLLPYSTFFSLP 306 (718)
Q Consensus 264 gKC~V~~~~~~~~~~~~~~~~~~~dfyc~~~Yd~~~~~F~~lp 306 (718)
|||.|++...+.+....... ..+.|||++.||...++|.++|
T Consensus 78 gkc~V~~~~~~~~~~~~~~~-~~~~F~cr~~yd~~~~~f~~~~ 119 (119)
T PF01426_consen 78 GKCNVLHLEDYEQARPYGKE-EPDTFFCRYAYDPQKKRFKKLP 119 (119)
T ss_dssp EEEEEEEHHHHTTGCCHCHH-TTTEEEEEEEEETTTTEEEE-S
T ss_pred eeeEEEECCccccccccccC-CCCEEEEEEEEeCCcCEEeCCC
Confidence 99999998766664333223 6778999999999999999886
No 16
>cd04715 BAH_Orc1p_like BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins. Orc1 is part of the Yeast Sir1-origin recognition complex, the Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.91 E-value=1.9e-24 Score=209.91 Aligned_cols=127 Identities=21% Similarity=0.321 Sum_probs=104.3
Q ss_pred hhcceeeEEEECCEEEEecCCeEEEecCCCCCCeEEEEeEEeecCC--CceEEEEEEEEecccCcccccc-ccCCCCceE
Q 047980 173 QAKCHYMWAEVDGHITYDLFDDAHVKAESGEEDYICKIVEMFEAVD--GTPYFTAQWYYRARDTVIESNA-HLIDQRRVF 249 (718)
Q Consensus 173 ~~r~~Y~s~~v~G~~~y~vGD~VyV~~~~~~p~yIgrI~~iwe~~~--g~~~v~v~WFyRpeET~~~~~~-~~~d~rELF 249 (718)
++++||+++.++|. +|+|||||||.+++ .++|||+|++||++.+ |.++++|+|||||+||+.+... ..++++|||
T Consensus 15 ~~~~~Y~s~~~~g~-~y~lGD~Vlv~s~~-~~~yIgkI~~iwe~~~~~g~~~~~v~WfyRp~E~~~~~~~~~~~~~nEvF 92 (159)
T cd04715 15 KDGQFYRSFTYDGV-EYRLYDDVYVHNGD-SEPYIGKIIKIYETAIDSGKKKVKVIWFFRPSEIRMELKGEPKRHINEVF 92 (159)
T ss_pred CCceEEEEEEECCE-EEeCCCEEEEeCCC-CCCEEEEEEEEEEcCCcCCceEEEEEeeeCHHHhccccccCcccCCCcEE
Confidence 67789999999999 99999999999876 6779999999999876 9999999999999999854322 367899999
Q ss_pred eeCCc-----cccccccccceeEEEeeCCccchhhh-hccCCCCcEEEeeeeeCCCCe
Q 047980 250 FSEIQ-----NDNPLECLVKKLNIARVPLNIDLEAK-KLAIPHCDYYCDMMYLLPYST 301 (718)
Q Consensus 250 ~S~~~-----d~~~l~~I~gKC~V~~~~~~~~~~~~-~~~~~~~dfyc~~~Yd~~~~~ 301 (718)
+|+|. ++||+++|+|||+|++++.+..-++. .......+|.|...|+...+.
T Consensus 93 lS~~~d~~~~~~n~l~sI~gKC~Vl~~~ey~~~~~~s~~~~~~~~~~f~~~f~~~~~~ 150 (159)
T cd04715 93 LACGRGEGLANINLLESIIGKCNVVCISEDFRNPQPSDGIPTSADFLFPCNFDVGRCV 150 (159)
T ss_pred EecCcCccccccCcHHHccceeEEEEehHhhhCCCCcCCccccCcceeeeEEEecCce
Confidence 99985 67999999999999999966653222 233456667776778876654
No 17
>cd04710 BAH_fungalPHD BAH, or Bromo Adjacent Homology domain, as present in fungal proteins containing PHD domains. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.91 E-value=2.7e-24 Score=203.81 Aligned_cols=117 Identities=21% Similarity=0.312 Sum_probs=100.1
Q ss_pred EEECCEEEEecCCeEEEecCC-CCCCeEEEEeEEeecCCC------------ceEEEEEEEEecccCccccccccCCCCc
Q 047980 181 AEVDGHITYDLFDDAHVKAES-GEEDYICKIVEMFEAVDG------------TPYFTAQWYYRARDTVIESNAHLIDQRR 247 (718)
Q Consensus 181 ~~v~G~~~y~vGD~VyV~~~~-~~p~yIgrI~~iwe~~~g------------~~~v~v~WFyRpeET~~~~~~~~~d~rE 247 (718)
+..+|. +|++||+|||.+++ ++|+|||||++|+..+++ ..+|+|+|||||+||..+. .+|.||
T Consensus 5 ~~~~g~-~~~vgD~Vyv~~~~~~ePyyIgrI~e~~~~~~~~~~~~~~~~~~~~~~vrV~wfYRp~Di~~~~---~~d~re 80 (135)
T cd04710 5 VLKNGE-LLKVNDHIYMSSEPPGEPYYIGRIMEFVPKHEFPSGIHARVFPASYFQVRLNWYYRPRDISRRV---VADSRL 80 (135)
T ss_pred EccCCe-EEeCCCEEEEecCCCCCCCEEEEEEEEEecCCCCccccccccCCCcEEEEEEEEeCHHHcCCcc---cCCceE
Confidence 345788 99999999999986 799999999999986533 3689999999999987332 579999
Q ss_pred eEeeCCccccccccccceeEEEeeCCccchhhhhccCCCCcEEEeeeeeCCCCeee
Q 047980 248 VFFSEIQNDNPLECLVKKLNIARVPLNIDLEAKKLAIPHCDYYCDMMYLLPYSTFF 303 (718)
Q Consensus 248 LF~S~~~d~~~l~~I~gKC~V~~~~~~~~~~~~~~~~~~~dfyc~~~Yd~~~~~F~ 303 (718)
||+|+|.|++|+++|+|||+|++..+..++. .....++.|||+..||+.+++|.
T Consensus 81 lf~S~h~d~~p~~si~gKC~V~~~~di~~l~--~~~~~~~~Fyf~~lyD~~~~r~~ 134 (135)
T cd04710 81 LYASMHSDICPIGSVRGKCTVRHRDQIPDLE--EYKKRPNHFYFDQLFDRYILRYY 134 (135)
T ss_pred EEEEeeEeeechHHEEeEEEEEEecccchhh--hhccCCCEEEEEeeeCcchhhcc
Confidence 9999999999999999999999998776653 34445788999999999999986
No 18
>cd04712 BAH_DCM_I BAH, or Bromo Adjacent Homology domain, as present in DNA (Cytosine-5)-methyltransferases (DCM) 1. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.90 E-value=3.4e-23 Score=195.40 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=98.6
Q ss_pred CCEEEEecCCeEEEecCCCC-----------CCeEEEEeEEeecCCCceEEEEEEEEecccCccccccccCCCCceEeeC
Q 047980 184 DGHITYDLFDDAHVKAESGE-----------EDYICKIVEMFEAVDGTPYFTAQWYYRARDTVIESNAHLIDQRRVFFSE 252 (718)
Q Consensus 184 ~G~~~y~vGD~VyV~~~~~~-----------p~yIgrI~~iwe~~~g~~~v~v~WFyRpeET~~~~~~~~~d~rELF~S~ 252 (718)
.|. .|+|||+|+|.++++. ++||++|++||++.+|.+||+++|||||+||+++. .+++||||+|+
T Consensus 2 ~~~-~i~vGD~V~v~~d~~~~~~~~~~~~~~~~~i~~V~~~~e~~~g~~~~h~~W~yrp~eTv~g~---~~~~~ElFLSd 77 (130)
T cd04712 2 HGL-TIRVGDVVSVERDDADSTTKWNDDHRWLPLVQFVEYMKKGSDGSKMFHGRWLYRGCDTVLGN---YANERELFLTN 77 (130)
T ss_pred CCC-EEeCCCEEEEcCCCCCccccccccccccceEEEEEEeeecCCCceEEEEEEEEcchhccccc---cCCCceEEEec
Confidence 466 8999999999998854 88999999999999999999999999999999776 68899999999
Q ss_pred Cccccccc----cccceeEEEeeCCccchhhhhccCCCCcEEEeeeeeCCCCeeeCCCc
Q 047980 253 IQNDNPLE----CLVKKLNIARVPLNIDLEAKKLAIPHCDYYCDMMYLLPYSTFFSLPP 307 (718)
Q Consensus 253 ~~d~~~l~----~I~gKC~V~~~~~~~~~~~~~~~~~~~dfyc~~~Yd~~~~~F~~lp~ 307 (718)
||++++++ +|.+||.|.+...... ...+..|||++.|+++.+.|.+||.
T Consensus 78 ~c~~~~~~~~~~~I~~k~~V~~~~~~~~------~~~~~~F~r~syy~~e~~~F~~l~~ 130 (130)
T cd04712 78 ECTCLELDLLSTEIKGVHKVDWSGTPWG------KGLPEFFVRQSYYWPERGAFTSLKR 130 (130)
T ss_pred cccccccccccceeEEEEEEEEecCcCC------cCCCCEEEEEEEECccCCceEcCCC
Confidence 99999999 9999999998765442 1233447777777779999999873
No 19
>cd04721 BAH_plant_1 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.87 E-value=1.8e-22 Score=190.50 Aligned_cols=115 Identities=15% Similarity=0.245 Sum_probs=97.1
Q ss_pred EECCEEEEecCCeEEEecCCCCCCeEEEEeEEeecCCCceEEEEEEEEecccCccccccccCCCCceEeeCCcccccccc
Q 047980 182 EVDGHITYDLFDDAHVKAESGEEDYICKIVEMFEAVDGTPYFTAQWYYRARDTVIESNAHLIDQRRVFFSEIQNDNPLEC 261 (718)
Q Consensus 182 ~v~G~~~y~vGD~VyV~~~~~~p~yIgrI~~iwe~~~g~~~v~v~WFyRpeET~~~~~~~~~d~rELF~S~~~d~~~l~~ 261 (718)
..+|. ++++||||||.++++++ |||+|++||++.+|.++|+|+||+||+||..+.....+.++|||+|++.++|+++|
T Consensus 2 ~r~~~-~i~vGD~V~v~~~~~~~-~va~Ie~i~ed~~g~~~v~v~WF~~p~E~~~~~~~~~~~~~EvFlS~~~d~i~~~~ 79 (130)
T cd04721 2 CRNGV-TISVHDFVYVLSEEEDR-YVAYIEDLYEDKKGSKMVKVRWFHTTDEVGAALSPDSVNPREIFLSPNLQVISVEC 79 (130)
T ss_pred ccCCE-EEECCCEEEEeCCCCCc-EEEEEEEEEEcCCCCEEEEEEEecCHHHhccccCCCCCCCCeEEEcCCccccchHH
Confidence 45788 99999999999987454 99999999999999999999999999999854433338999999999999999999
Q ss_pred ccceeEEEeeCCccchhhhhcc-CCCCcEEEeeeeeCC
Q 047980 262 LVKKLNIARVPLNIDLEAKKLA-IPHCDYYCDMMYLLP 298 (718)
Q Consensus 262 I~gKC~V~~~~~~~~~~~~~~~-~~~~dfyc~~~Yd~~ 298 (718)
|.|||+|++...+.+....... .....|+|+..||..
T Consensus 80 I~gk~~Vls~~~y~k~~~~~~~~~~~~~f~C~~~~d~~ 117 (130)
T cd04721 80 IDGLATVLTREHYEKFQSVPKNSSELQAYFCYRQIDNN 117 (130)
T ss_pred eeeeeEECCHHHHhhhhccccCccccccEEEEEEecCC
Confidence 9999999998877765432222 234579999999875
No 20
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.82 E-value=1.6e-21 Score=184.88 Aligned_cols=96 Identities=18% Similarity=0.369 Sum_probs=86.2
Q ss_pred CCeEEEEeEEeecCCCceEEEEEEEEecccCccccccccCCCCceEeeCCccccccccccceeEEEeeCCccchhhhhcc
Q 047980 204 EDYICKIVEMFEAVDGTPYFTAQWYYRARDTVIESNAHLIDQRRVFFSEIQNDNPLECLVKKLNIARVPLNIDLEAKKLA 283 (718)
Q Consensus 204 p~yIgrI~~iwe~~~g~~~v~v~WFyRpeET~~~~~~~~~d~rELF~S~~~d~~~l~~I~gKC~V~~~~~~~~~~~~~~~ 283 (718)
.+|||||++||++. |+.+|+|+|||||+||..+ ...+|..+|||+|+|.|++++++|+|||.|+....+.++ ..
T Consensus 52 ~~~vArIekiW~~~-G~~~~~grWy~rPEET~~g-r~~~~~~kEvFlS~~~d~~~~~~I~gkC~V~~~keY~k~----e~ 125 (148)
T cd04718 52 DLWLARIEKLWEEN-GTYWYAARWYTLPEETHMG-RQPHNLRRELYLTNDFADIEMECILRHCSVKCPKEFRDA----SN 125 (148)
T ss_pred chHHHHHHHHHhcc-CceEEEEEEEeCchhccCc-cccccccceeeeccccccccHHHHhcccEEcCHHHcccc----cC
Confidence 35999999999987 9999999999999999955 467799999999999999999999999999998777653 35
Q ss_pred CCCCcEEEeeeeeCCCCeeeCC
Q 047980 284 IPHCDYYCDMMYLLPYSTFFSL 305 (718)
Q Consensus 284 ~~~~dfyc~~~Yd~~~~~F~~l 305 (718)
.+.++|||++.||..++.|+++
T Consensus 126 ~g~Dvy~Ce~~Yd~~~~~Fkr~ 147 (148)
T cd04718 126 DGDDVFLCEYEYDVHWQSFKRL 147 (148)
T ss_pred CCCceEEEEEEEhhhcCceeec
Confidence 5778899999999999999986
No 21
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=99.81 E-value=1.5e-20 Score=188.84 Aligned_cols=166 Identities=20% Similarity=0.317 Sum_probs=133.7
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCCCceeec-CchHHHHHHHHHHHHhhhcccc
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHPETEVRN-ESAEDFLTLLREWEKLCISFSL 415 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p~~~v~~-~~~~~~l~~lke~~~l~~~~~~ 415 (718)
++++|++||||.|||-..| +.|.+....+.|+|+|+.|-++|++| |++.+.. .+|+.
T Consensus 2 ~pLrVlelysg~ggmhyal----~~a~ipaqiVaAiDvNtvANevY~~N-~h~~L~k~~~I~~----------------- 59 (338)
T KOG0919|consen 2 MPLRVLELYSGHGGMHYAL----EDAQIPAQIVAAIDVNTVANEVYAHN-YHSNLVKTRNIQS----------------- 59 (338)
T ss_pred CceehhhhhhccchhhhhH----hhhcCchhhEEEEecchhHHHHHhcC-cccchhhccccce-----------------
Confidence 5789999999999999998 56666555558999999999999999 5544321 11110
Q ss_pred cccCCccccccccCCCCCCCcCCCCCCCCCCCCCchhHHHHHHHHhHhcCCchhhhcccceeeEeeccCCCCCCCCcccc
Q 047980 416 IARKDPQQQLYSFNDDGESEEDDDNGNVEDESEDDSEIFEVEKILKICYGDPKEIKKRGLYLKVRWRNYGPSEDTWEPIE 495 (718)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~i~~g~p~~~~~~~l~~~~~w~~~~~~~d~w~~~~ 495 (718)
+..+||
T Consensus 60 ---------------------------------lt~kef----------------------------------------- 65 (338)
T KOG0919|consen 60 ---------------------------------LTVKEF----------------------------------------- 65 (338)
T ss_pred ---------------------------------eeHhhh-----------------------------------------
Confidence 011111
Q ss_pred cccccccchhhhhhcccccccCCCCCCccEEEecCCCCccccccccCCCCCCcccchhhHHHHHHHHhhhcC--CcEEEE
Q 047980 496 GLSNCGEKIKEFVTHGFKSKILPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLK--PKFVLM 573 (718)
Q Consensus 496 ~~~~~~~~i~e~~~~~~~~~l~p~~~~vDll~gGPPCQ~fS~ag~~r~~~~~~~D~rn~L~~~~~riv~~~k--Pk~~v~ 573 (718)
..-+.++|..+||||+|...|+++ ...|+|...|.+.+.++-+++ |+|++|
T Consensus 66 -----------------------d~l~~~m~lMSPpCQPfTRiG~q~----D~~D~Rs~aflhil~~lP~~q~LPeYIL~ 118 (338)
T KOG0919|consen 66 -----------------------DKLQANMLLMSPPCQPFTRIGLQR----DTEDKRSDAFLHILGLLPECQELPEYILM 118 (338)
T ss_pred -----------------------hhcccceEeeCCCCCchhhhcccc----cccCchhHHHHHHHhhhhhhhhhhHHHHH
Confidence 013579999999999999999765 468999999999999999885 999999
Q ss_pred ecchhhhhcccchHHHHHHHHHHhCCceEEEEEEeccccCCCCCCcEEEEEEecC
Q 047980 574 ENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFRMRVFLWGAQP 628 (718)
Q Consensus 574 ENV~gll~~~~g~~~~~i~~~L~~lGY~v~~~vLnA~dyGvPQ~R~R~fivg~r~ 628 (718)
|||.|+-.+. ..+.+++.|+..||+.+..+|....||+|.+|-|+|.||...
T Consensus 119 ENVkGFE~S~---ar~~~i~~lencGf~~~EfiLsPtqfniPNsR~Ryy~iArl~ 170 (338)
T KOG0919|consen 119 ENVKGFESSQ---ARNQFIESLENCGFHWREFILSPTQFNIPNSRYRYYCIARLG 170 (338)
T ss_pred hhcccchhhh---HHHHHHHHHHhcCchhhheeccccccCCCCcchheeehhhhC
Confidence 9999998764 356678899999999999999999999999999999998654
No 22
>cd04711 BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.81 E-value=5.9e-20 Score=171.33 Aligned_cols=112 Identities=14% Similarity=0.092 Sum_probs=90.6
Q ss_pred EEecCC---CCCCeEEEEeEEeecCCCc-------eEEEEEEEEecccCccccc-cccCCCCceEeeCCccccccccccc
Q 047980 196 HVKAES---GEEDYICKIVEMFEAVDGT-------PYFTAQWYYRARDTVIESN-AHLIDQRRVFFSEIQNDNPLECLVK 264 (718)
Q Consensus 196 yV~~~~---~~p~yIgrI~~iwe~~~g~-------~~v~v~WFyRpeET~~~~~-~~~~d~rELF~S~~~d~~~l~~I~g 264 (718)
||++++ ++|+|||||++|...+++. .+|+|+|||||+||..+.. ..+.|.+|||+|+|.+++|+.+|.|
T Consensus 15 ~~~~~~~d~~ePy~VgrI~eI~~~k~~~~k~~~~~ikvrV~~fYRPEdi~~g~~~ayhsDirevy~Sd~~~~~~~~~I~G 94 (137)
T cd04711 15 YIKGSNLDAPEPFRIGRIKEIFCAKRSNGKPNESDIKLRINKFYRPENTHKGFKATYHADINMLYWSDEEATVDFSAVQG 94 (137)
T ss_pred ccccccCCCCCCcEEEEEEEEecCCCCCCCCCccceEEEEEEEecccccccccccccccceeeEEeecceeecChhhccc
Confidence 455544 7999999999999765443 5799999999999995443 3556779999999999999999999
Q ss_pred eeEEEeeCCccchhhhhccCCCCcEEEeeeeeCCCCeeeCCCc
Q 047980 265 KLNIARVPLNIDLEAKKLAIPHCDYYCDMMYLLPYSTFFSLPP 307 (718)
Q Consensus 265 KC~V~~~~~~~~~~~~~~~~~~~dfyc~~~Yd~~~~~F~~lp~ 307 (718)
||+|++...-...-......++++|||++.|+..++.|..+|+
T Consensus 95 KC~V~~~~di~~s~~~y~~~gpd~Fyf~~~Y~a~t~~F~d~p~ 137 (137)
T cd04711 95 RCTVEYGEDLPESVQEYSGGGPDRFYFLEAYNAKTKSFEDPPN 137 (137)
T ss_pred eEEEEeccccchhHHHHhcCCCcceEEhhhhccccCcccCCCC
Confidence 9999987754432222344678999999999999999999884
No 23
>cd04719 BAH_Orc1p_animal BAH, or Bromo Adjacent Homology domain, as present in animal homologs of Saccharomyces cerevisiae Orc1p. Orc1 is part of the Yeast Sir1-origin recognition complex. The Orc1p BAH doman functions in epigenetic silencing. In vertebrates, a similar ORC protein complex exists, which has been shown essential for DNA replication in Xenopus laevis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.78 E-value=6.1e-19 Score=165.41 Aligned_cols=111 Identities=17% Similarity=0.263 Sum_probs=89.8
Q ss_pred EEEecCCeEEEecCCCCCCeEEEEeEEeecCCC---ceEEEEEEEEecccCcccc---ccccCCCCceEeeCCc---ccc
Q 047980 187 ITYDLFDDAHVKAESGEEDYICKIVEMFEAVDG---TPYFTAQWYYRARDTVIES---NAHLIDQRRVFFSEIQ---NDN 257 (718)
Q Consensus 187 ~~y~vGD~VyV~~~~~~p~yIgrI~~iwe~~~g---~~~v~v~WFyRpeET~~~~---~~~~~d~rELF~S~~~---d~~ 257 (718)
.+|+|||||+|++++.+++|||+|+.||+..++ .+.++|||||||+|+.... .++..+++|||+++|. +++
T Consensus 2 ~~i~vGd~VlI~~~d~~~~yVAkI~~i~e~~~~~~~~~~~~VqWy~R~~Ev~~~~~~~~~~~~~~~EvF~~~~~~~~~~i 81 (128)
T cd04719 2 LTIEVGDFVLIEGEDADGPDVARILHLYEDGNEDDDPKRAIVQWFSRPSEVPKNKRKLLGREPHSQEVFFYSRSSCDNDI 81 (128)
T ss_pred eEEecCCEEEEECCCCCCCcEeeehhhhccccCCcccceEEEEcccChHHccccchhhccCCCCCcEEEEecCccccCcE
Confidence 389999999999999777799999999999776 5689999999999995222 3455789999999987 589
Q ss_pred ccccccceeEEEeeCCccchhhhhccCCCCcEEEeeeeeCC
Q 047980 258 PLECLVKKLNIARVPLNIDLEAKKLAIPHCDYYCDMMYLLP 298 (718)
Q Consensus 258 ~l~~I~gKC~V~~~~~~~~~~~~~~~~~~~dfyc~~~Yd~~ 298 (718)
+++||.|||.|+.++++.+++... ......||++..|+..
T Consensus 82 ~~etI~gkc~V~~~~~y~~l~~~~-~~~~~~~F~r~~~~~k 121 (128)
T cd04719 82 DAETIIGKVRVEPVEPKTDLPETK-KKTGGPLFVKRYWDTK 121 (128)
T ss_pred eHHHcccEEEEEEcCCccchhhhc-cccCceEEEEEEeccc
Confidence 999999999999999999876411 1234557776666543
No 24
>cd04720 BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology domain, as present in Orc1p, which again is part of the Saccharomyces cerevisiae Sir1-origin recognition complex, and as present in Sir3p. The Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.73 E-value=1.4e-17 Score=165.44 Aligned_cols=120 Identities=14% Similarity=0.149 Sum_probs=98.6
Q ss_pred CCEEEEecCCeEEEecCCCCCCeEEEEeEEeecCC-CceEEEEEEEEecccCccccccccCC--------CCceEeeCCc
Q 047980 184 DGHITYDLFDDAHVKAESGEEDYICKIVEMFEAVD-GTPYFTAQWYYRARDTVIESNAHLID--------QRRVFFSEIQ 254 (718)
Q Consensus 184 ~G~~~y~vGD~VyV~~~~~~p~yIgrI~~iwe~~~-g~~~v~v~WFyRpeET~~~~~~~~~d--------~rELF~S~~~ 254 (718)
+|. .|++||+|+|++++..++|||.|.+|++... +.+.+.|+|||||.|+...+....++ ++|||+|.|.
T Consensus 49 d~~-~~~vGD~Vlik~~~~~~~~V~iI~ei~~~~~~~~v~i~v~Wy~r~~Ei~~~~~~~~~~~~~~~~~~~nElflT~~~ 127 (179)
T cd04720 49 DGL-ELSVGDTILVKDDVANSPSVYLIHEIRLNTLNNEVELWVMWFLRWFEINPARYYKQFDPEFRSESNKNELYLTAEL 127 (179)
T ss_pred CCe-EEeCCCEEEEeCCCCCCCEEEEEEEEEeCCCCCEEEEEEEEcCCHHHcccccccccccchhcccCCCceEEEeccc
Confidence 677 9999999999999888889999999998865 55789999999999997433322333 7999999999
Q ss_pred cccccccccceeEEEeeCCccchhhhhccCCCCcEEEeeeeeCCCCeeeCC
Q 047980 255 NDNPLECLVKKLNIARVPLNIDLEAKKLAIPHCDYYCDMMYLLPYSTFFSL 305 (718)
Q Consensus 255 d~~~l~~I~gKC~V~~~~~~~~~~~~~~~~~~~dfyc~~~Yd~~~~~F~~l 305 (718)
|.+++.+|+|||+|+....+.++... ......+|||+..|++..+.|..+
T Consensus 128 d~i~l~~Ii~k~~Vls~~ef~~~~~~-~~~~~~~F~cR~~~d~~~~~F~~~ 177 (179)
T cd04720 128 SEIKLKDIIDKANVLSESEFNDLSTD-DKNGERTFFCRYACEPDGEEFVWI 177 (179)
T ss_pred ceEEhhheeeeEEEecHHHhhhhccc-ccCCCceEEEEEEEeCCCCeEccc
Confidence 99999999999999987766554322 123467899999999999988744
No 25
>KOG1886 consensus BAH domain proteins [Transcription]
Probab=99.55 E-value=5.6e-15 Score=162.14 Aligned_cols=133 Identities=19% Similarity=0.297 Sum_probs=111.6
Q ss_pred hhcceeeEEEECCEEEEec-CCeEEEecCC-CCCCeEEEEeEEeecCC-CceEEEEEEEEecccCcccccc--ccCCCCc
Q 047980 173 QAKCHYMWAEVDGHITYDL-FDDAHVKAES-GEEDYICKIVEMFEAVD-GTPYFTAQWYYRARDTVIESNA--HLIDQRR 247 (718)
Q Consensus 173 ~~r~~Y~s~~v~G~~~y~v-GD~VyV~~~~-~~p~yIgrI~~iwe~~~-g~~~v~v~WFyRpeET~~~~~~--~~~d~rE 247 (718)
..++||.++.+.|. .|.. +|+|++.+++ +.++|||+|..||.... +.+.+.|+|||||+|+..+... ..-+++|
T Consensus 35 ~k~~h~~t~~~~~g-~~~~~~d~vllvped~~~pPyvaii~~i~a~~~g~~~k~ev~W~YrPee~~~~~~~~~~a~~~re 113 (464)
T KOG1886|consen 35 VKSLHFETFIYRGG-RYINYGDSVLLVPEDPGKPPYVAIIEDIYAQERGGNVKVEVQWFYRPEESEGGGSGKWGAKQPRE 113 (464)
T ss_pred cccccccceeeccC-cccccCcceeecCCCCCCCCeeEEEeeeeccccCCCcceecccccCCCccCCCCCCCcccCCCcc
Confidence 56899999999988 7777 9999999987 88899999999998866 5899999999999999844321 2225679
Q ss_pred eEeeCCccccccccccceeEEEeeCCccchhhhhccCCCCcEEEeeeeeCCCCeeeCCCccC
Q 047980 248 VFFSEIQNDNPLECLVKKLNIARVPLNIDLEAKKLAIPHCDYYCDMMYLLPYSTFFSLPPEN 309 (718)
Q Consensus 248 LF~S~~~d~~~l~~I~gKC~V~~~~~~~~~~~~~~~~~~~dfyc~~~Yd~~~~~F~~lp~e~ 309 (718)
||+|.|+|.+++++|.+||.|.+++-+.++. ......+|+|+..||.-++.|..+....
T Consensus 114 lF~SfH~De~~A~ti~~rC~V~fvp~~kqlp---~~~~~~~f~~r~vYd~~~~~~~~~~~~~ 172 (464)
T KOG1886|consen 114 LFLSFHEDEAFAETILHRCKVHFVPAYKQLP---NRVGHESFICRRVYDAVTSKLRKLRDGD 172 (464)
T ss_pred ccccccccchhhhhhcccceeeecccccccc---ccCCCCCcccccccccccccccCccccc
Confidence 9999999999999999999999999877653 2245677999999999999988776554
No 26
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.47 E-value=3.3e-14 Score=161.46 Aligned_cols=131 Identities=18% Similarity=0.296 Sum_probs=113.2
Q ss_pred ceeeE-EEECCEEEEecCCeEEEecCCC-CCCeEEEEeEEeecCCCceEEEEEEEEecccCccccccccCCCCceEeeCC
Q 047980 176 CHYMW-AEVDGHITYDLFDDAHVKAESG-EEDYICKIVEMFEAVDGTPYFTAQWYYRARDTVIESNAHLIDQRRVFFSEI 253 (718)
Q Consensus 176 ~~Y~s-~~v~G~~~y~vGD~VyV~~~~~-~p~yIgrI~~iwe~~~g~~~v~v~WFyRpeET~~~~~~~~~d~rELF~S~~ 253 (718)
.|+.. +.++|. .|.+||+|||.+..+ ..+.|++|.++|++.+|..|..++|||||++|+ |...+.|.++|+|.+..
T Consensus 178 ~~~~~~~~i~~~-~~~~gd~vlv~~~~d~~~p~v~~Ier~w~~~dg~k~~~~~w~~rP~~T~-H~a~r~F~k~Evfkt~~ 255 (629)
T KOG1827|consen 178 YHELGPVEIDGT-KYIVGDYVLVQNPADNLKPIVAQIERLWKLPDGEKWPQGCWIYRPEETV-HRADRKFYKQEVFKTSL 255 (629)
T ss_pred cccCCCccccCc-ccccCceeeecCcccccCCceeeecccccCcccccccceeEeeCCccCc-cccccchhcccceeccc
Confidence 44445 799999 999999999999875 788999999999999999999999999999999 88899999999999999
Q ss_pred ccccccccccceeEEEeeCCccchhhhhccCCCCcEEEeeeeeCCCCeeeCCCccC
Q 047980 254 QNDNPLECLVKKLNIARVPLNIDLEAKKLAIPHCDYYCDMMYLLPYSTFFSLPPEN 309 (718)
Q Consensus 254 ~d~~~l~~I~gKC~V~~~~~~~~~~~~~~~~~~~dfyc~~~Yd~~~~~F~~lp~e~ 309 (718)
..+.+++.|+|+|.|+++..+....... ...-..|.|+++|+...+.|.++-.=.
T Consensus 256 ~~~~~~q~l~g~c~v~~~~~yi~~~p~~-ls~~dv~lcesRyn~~~K~f~kirsw~ 310 (629)
T KOG1827|consen 256 YRDDLVQRLLGKCYVMKPTEYISGDPEN-LSEEDVFLCESRYNEQLKKFNKIRSWK 310 (629)
T ss_pred ccccHHHHhhcceEEeehhHhhhcCccc-ccccceeeEEeeeccchhhhccccCch
Confidence 9999999999999999988666542211 112344999999999999999876544
No 27
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=98.78 E-value=8.7e-10 Score=119.43 Aligned_cols=121 Identities=17% Similarity=0.218 Sum_probs=99.1
Q ss_pred EEecCCeEEEecCCCCCCeEEEEeEEeecCCCceEEEEEEEEecccCcccc-----------------------------
Q 047980 188 TYDLFDDAHVKAESGEEDYICKIVEMFEAVDGTPYFTAQWYYRARDTVIES----------------------------- 238 (718)
Q Consensus 188 ~y~vGD~VyV~~~~~~p~yIgrI~~iwe~~~g~~~v~v~WFyRpeET~~~~----------------------------- 238 (718)
+|+|||+||+..+...||.|-||+++-.+.+|+.-.+|-.|||-.|+.-+.
T Consensus 5 ~y~vgd~vYf~~sss~PYliRrIEELnKTa~GnVeAkvVc~~RRRDIs~~L~~lAD~~ar~~~~y~a~~~a~~~~e~e~E 84 (693)
T KOG3554|consen 5 MYRVGDYVYFENSSSNPYLIRRIEELNKTANGNVEAKVVCYLRRRDISSHLLKLADKHARRFDNYAAPEAAPEATEAEIE 84 (693)
T ss_pred cceecceEEEecCCCChHHHHHHHHHhccccCCcceEEEEEEEccchHHHHHHHHHHHhhhcccccCcccCcccchhhhh
Confidence 799999999999998899999999999999999999999999999874111
Q ss_pred --------------ccccCCCCceEeeCCccccccccccceeEEEeeCCccchhhhhccCCCCcEEEeeeeeCCCCeeeC
Q 047980 239 --------------NAHLIDQRRVFFSEIQNDNPLECLVKKLNIARVPLNIDLEAKKLAIPHCDYYCDMMYLLPYSTFFS 304 (718)
Q Consensus 239 --------------~~~~~d~rELF~S~~~d~~~l~~I~gKC~V~~~~~~~~~~~~~~~~~~~dfyc~~~Yd~~~~~F~~ 304 (718)
+++..-.+|||+|-.....|+..|+|||.|.-+...+.+. ......+.|||.+.||+.-+++--
T Consensus 85 Ee~e~p~~vdlt~~qrhqLrhrElFlsRQ~EsLPAthIRGKCsV~LLnete~~~--~YL~~eDtFfySLVyDP~~kTLLA 162 (693)
T KOG3554|consen 85 EESECPAPVDLTEKQRHQLRHRELFLSRQSESLPATHIRGKCSVTLLNETESLQ--SYLEKEDTFFYSLVYDPNQKTLLA 162 (693)
T ss_pred hhccCCCcCCCCHHHHHHHHHHHHHHhhhhccCchhhhccceeEEEecChHHHH--hhccccceeEEEeeeccchhhhhc
Confidence 2233346899999999999999999999999987666542 233334559999999999888765
Q ss_pred CCccCc
Q 047980 305 LPPENK 310 (718)
Q Consensus 305 lp~e~~ 310 (718)
=..+++
T Consensus 163 DkGeIR 168 (693)
T KOG3554|consen 163 DKGEIR 168 (693)
T ss_pred cCccee
Confidence 566665
No 28
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.13 E-value=0.003 Score=70.29 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=33.5
Q ss_pred cceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 339 VKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 339 ~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
-++||||||+|.+++.+ ...|-.+ ++||+++.|++..+.|.
T Consensus 235 ~~vLDL~cG~G~~~l~l----a~~~~~v---~~vE~~~~av~~a~~N~ 275 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHC----AGPDTQL---TGIEIESEAIACAQQSA 275 (374)
T ss_pred CEEEEccCCccHHHHHH----hhcCCeE---EEEECCHHHHHHHHHHH
Confidence 47999999999999887 3345443 59999999999988884
No 29
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.12 E-value=0.0064 Score=68.82 Aligned_cols=42 Identities=14% Similarity=0.295 Sum_probs=33.7
Q ss_pred ccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
..++||||||.|.+++-|. ..+.++ .|||+++.|++..+.|.
T Consensus 293 ~~~vLDl~cG~G~~sl~la----~~~~~V---~~vE~~~~av~~a~~n~ 334 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLA----KQAKSV---VGIEVVPESVEKAQQNA 334 (431)
T ss_pred CCEEEEcCCCcCHHHHHHH----HhCCEE---EEEEcCHHHHHHHHHHH
Confidence 3589999999999998883 333343 59999999999888874
No 30
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.11 E-value=0.0011 Score=60.18 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=35.6
Q ss_pred cceeccccccchhhHhHhhhhhhcC-CeeEeEEeecccHHHHHHHHhhCCC
Q 047980 339 VKLLDLYSGCGAMSTGLCLGANLAG-LNLVTRWAVDINEYACQSLKLNHPE 388 (718)
Q Consensus 339 ~~~lDLFsG~Gg~s~Gl~~g~~~aG-~~~~~~~avd~~~~A~~t~~~N~p~ 388 (718)
.+|||+|||.|-+...+ ...| .++ .++|+|+.|++..+.|++.
T Consensus 2 ~~vlD~~~G~G~~~~~~----~~~~~~~~---~gvdi~~~~~~~a~~~~~~ 45 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAA----LRRGAARV---TGVDIDPEAVELARRNLPR 45 (117)
T ss_dssp EEEEEETSTTCHHHHHH----HHHCTCEE---EEEESSHHHHHHHHHHCHH
T ss_pred CEEEEcCcchHHHHHHH----HHHCCCeE---EEEEECHHHHHHHHHHHHH
Confidence 47999999999988877 4556 444 5999999999999999754
No 31
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.03 E-value=0.0035 Score=65.99 Aligned_cols=44 Identities=32% Similarity=0.508 Sum_probs=34.8
Q ss_pred ccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
..++||||||+|.+++.+.. ...|.++ ++||+|+.|++..+.|.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~--~~~~~~v---~~vDis~~al~~A~~N~ 130 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAA--ALDGIEL---HAADIDPAAVRCARRNL 130 (251)
T ss_pred CCEEEEecCchHHHHHHHHH--hCCCCEE---EEEECCHHHHHHHHHHH
Confidence 45899999999999988732 2234554 59999999999998884
No 32
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.96 E-value=0.01 Score=71.35 Aligned_cols=43 Identities=21% Similarity=0.242 Sum_probs=35.5
Q ss_pred ccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
.-+|||||||.|++++-+ ...|..-+ .+||+++.|++..+.|.
T Consensus 539 g~rVLDlf~gtG~~sl~a----a~~Ga~~V--~~vD~s~~al~~a~~N~ 581 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHA----ALGGAKST--TTVDMSNTYLEWAERNF 581 (702)
T ss_pred CCeEEEcCCCCCHHHHHH----HHCCCCEE--EEEeCCHHHHHHHHHHH
Confidence 458999999999998877 44566544 59999999999999886
No 33
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.88 E-value=0.0031 Score=62.27 Aligned_cols=39 Identities=26% Similarity=0.399 Sum_probs=31.0
Q ss_pred ceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhh
Q 047980 340 KLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLN 385 (718)
Q Consensus 340 ~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N 385 (718)
++||+|||+||-+..| .+. ++.| .|||+|+.-++..++|
T Consensus 2 ~vlD~fcG~GGNtIqF----A~~-~~~V--iaidid~~~~~~a~hN 40 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQF----ART-FDRV--IAIDIDPERLECAKHN 40 (163)
T ss_dssp EEEETT-TTSHHHHHH----HHT-T-EE--EEEES-HHHHHHHHHH
T ss_pred EEEEeccCcCHHHHHH----HHh-CCeE--EEEECCHHHHHHHHHH
Confidence 5899999999999999 444 4444 5999999999999999
No 34
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=96.87 E-value=0.0042 Score=67.45 Aligned_cols=42 Identities=21% Similarity=0.354 Sum_probs=34.3
Q ss_pred ccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
..++||||||.|.++.-| ...|.++ .|||+++.|.+..+.|.
T Consensus 174 ~~~VLDl~cG~G~~sl~l----a~~~~~V---~gvD~s~~av~~A~~n~ 215 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHC----ATPGMQL---TGIEISAEAIACAKQSA 215 (315)
T ss_pred CCEEEEccCCCCHHHHHH----HhcCCEE---EEEeCCHHHHHHHHHHH
Confidence 468999999999999888 3456554 59999999999888774
No 35
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.75 E-value=0.0036 Score=62.89 Aligned_cols=44 Identities=32% Similarity=0.413 Sum_probs=31.9
Q ss_pred ccccceeccccccchhhH-hHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 336 KMDVKLLDLYSGCGAMST-GLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~-Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
-...++||||||.|.|++ .| .-|..-+ +.||.|+.|+..++.|.
T Consensus 41 ~~g~~vLDLFaGSGalGlEAL-----SRGA~~v--~fVE~~~~a~~~i~~N~ 85 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEAL-----SRGAKSV--VFVEKNRKAIKIIKKNL 85 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHH-----HTT-SEE--EEEES-HHHHHHHHHHH
T ss_pred cCCCeEEEcCCccCccHHHHH-----hcCCCeE--EEEECCHHHHHHHHHHH
Confidence 567799999999998764 33 3455555 59999999999999994
No 36
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.66 E-value=0.015 Score=65.92 Aligned_cols=43 Identities=26% Similarity=0.346 Sum_probs=35.2
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhh
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLN 385 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N 385 (718)
....++||||||.|.+++.| .....+| .|||+++.|.+..+.|
T Consensus 292 ~~~~~vlDlYCGvG~f~l~l----A~~~~~V---~gvEi~~~aV~~A~~N 334 (432)
T COG2265 292 AGGERVLDLYCGVGTFGLPL----AKRVKKV---HGVEISPEAVEAAQEN 334 (432)
T ss_pred cCCCEEEEeccCCChhhhhh----cccCCEE---EEEecCHHHHHHHHHH
Confidence 45678999999999999988 3344444 5999999999988888
No 37
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=96.49 E-value=0.0036 Score=63.18 Aligned_cols=57 Identities=28% Similarity=0.348 Sum_probs=42.8
Q ss_pred ccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC------CCceeecCchHHHH
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH------PETEVRNESAEDFL 400 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~------p~~~v~~~~~~~~l 400 (718)
..++||||||.|++++-+ ...|...+ .+||+++.|++..+.|. ..+.+++.|+.+++
T Consensus 50 g~~vLDLfaGsG~lglea----~srga~~v--~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l 112 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEA----LSRGAKVA--FLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRAL 112 (189)
T ss_pred CCEEEEecCCCcHHHHHH----HhCCCCEE--EEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHH
Confidence 457999999999887666 44565444 59999999999888884 13567787775553
No 38
>PHA03411 putative methyltransferase; Provisional
Probab=96.41 E-value=0.028 Score=59.98 Aligned_cols=52 Identities=25% Similarity=0.233 Sum_probs=40.8
Q ss_pred cceeccccccchhhHhHhhhhhhc-CCeeEeEEeecccHHHHHHHHhhCCCceeecCch
Q 047980 339 VKLLDLYSGCGAMSTGLCLGANLA-GLNLVTRWAVDINEYACQSLKLNHPETEVRNESA 396 (718)
Q Consensus 339 ~~~lDLFsG~Gg~s~Gl~~g~~~a-G~~~~~~~avd~~~~A~~t~~~N~p~~~v~~~~~ 396 (718)
-+||||+||+|.++..+. ... +.++ .+||+++.+++..+.|+|+..+++.|+
T Consensus 66 grVLDLGcGsGilsl~la---~r~~~~~V---~gVDisp~al~~Ar~n~~~v~~v~~D~ 118 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCML---HRCKPEKI---VCVELNPEFARIGKRLLPEAEWITSDV 118 (279)
T ss_pred CeEEEcCCCCCHHHHHHH---HhCCCCEE---EEEECCHHHHHHHHHhCcCCEEEECch
Confidence 479999999999887662 222 4554 599999999999999988877766554
No 39
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.37 E-value=0.0028 Score=60.99 Aligned_cols=47 Identities=30% Similarity=0.367 Sum_probs=38.9
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCCC
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHPE 388 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p~ 388 (718)
.....++||.||||.+|+|+ ..-+-+.+ .++|||+.|.+++.+|--+
T Consensus 47 iEgkkl~DLgcgcGmLs~a~----sm~~~e~v--lGfDIdpeALEIf~rNaeE 93 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAF----SMPKNESV--LGFDIDPEALEIFTRNAEE 93 (185)
T ss_pred ccCcchhhhcCchhhhHHHh----hcCCCceE--EeeecCHHHHHHHhhchHH
Confidence 45678999999999999998 44555555 7999999999999999544
No 40
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.34 E-value=0.0039 Score=62.59 Aligned_cols=56 Identities=32% Similarity=0.429 Sum_probs=46.6
Q ss_pred ccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCC----CceeecCchHHH
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHP----ETEVRNESAEDF 399 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p----~~~v~~~~~~~~ 399 (718)
.-+|+||-||+|.++.|. ...|-.-| .|||+|+.|.++.+.|-. +..+.+.|+.+|
T Consensus 46 g~~V~DlG~GTG~La~ga----~~lGa~~V--~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~ 105 (198)
T COG2263 46 GKTVLDLGAGTGILAIGA----ALLGASRV--LAVDIDPEALEIARANAEELLGDVEFVVADVSDF 105 (198)
T ss_pred CCEEEEcCCCcCHHHHHH----HhcCCcEE--EEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc
Confidence 447999999999999888 67886655 699999999999999987 566666666665
No 41
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=96.27 E-value=0.046 Score=62.23 Aligned_cols=42 Identities=21% Similarity=0.285 Sum_probs=33.7
Q ss_pred ccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
..++||||||.|.++.-| ...+..+ .|+|+++.|.+..+.|.
T Consensus 298 ~~~VLDlgcGtG~~sl~l----a~~~~~V---~gvD~s~~al~~A~~n~ 339 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPL----ARQAAEV---VGVEGVEAMVERARENA 339 (443)
T ss_pred CCEEEEEeccCCHHHHHH----HHhCCEE---EEEeCCHHHHHHHHHHH
Confidence 458999999999999887 3334443 59999999999888874
No 42
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=96.25 E-value=0.058 Score=53.37 Aligned_cols=41 Identities=27% Similarity=0.425 Sum_probs=33.6
Q ss_pred cceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 339 VKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 339 ~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
.++|||.||.|.++..+ ...|.++ .++|+++.+.+..+.|.
T Consensus 21 ~~vLdlG~G~G~~~~~l----~~~~~~v---~~vD~s~~~~~~a~~~~ 61 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRL----KGKGKCI---LTTDINPFAVKELRENA 61 (179)
T ss_pred CeEEEeCCChhHHHHHH----HhcCCEE---EEEECCHHHHHHHHHHH
Confidence 46999999999998887 4455533 69999999999888874
No 43
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=96.13 E-value=0.029 Score=59.42 Aligned_cols=47 Identities=17% Similarity=0.166 Sum_probs=35.5
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
+...+|||+|||.||.++-+..-+...| .+ +|+|+++...+..+.|.
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g-~v---~a~D~~~~~l~~~~~n~ 116 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEG-AI---VANEFSKSRTKVLIANI 116 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCC-EE---EEEcCCHHHHHHHHHHH
Confidence 3456899999999999987743222234 33 69999999999888884
No 44
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.01 E-value=0.0063 Score=62.06 Aligned_cols=45 Identities=33% Similarity=0.451 Sum_probs=31.7
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhh
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLN 385 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N 385 (718)
+..-+|+|+|||+|.+++-+. +.+....+ +|+|+||+|++.++.|
T Consensus 100 ~~~e~VlD~faGIG~f~l~~a---k~~~~~~V--~A~d~Np~a~~~L~~N 144 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIA---KHGKAKRV--YAVDLNPDAVEYLKEN 144 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHH---HHT-SSEE--EEEES-HHHHHHHHHH
T ss_pred CcceEEEEccCCccHHHHHHh---hhcCccEE--EEecCCHHHHHHHHHH
Confidence 345589999999999998772 32333434 7999999999999888
No 45
>PHA03412 putative methyltransferase; Provisional
Probab=95.88 E-value=0.014 Score=61.05 Aligned_cols=55 Identities=20% Similarity=0.137 Sum_probs=40.6
Q ss_pred ccceeccccccchhhHhHhhhhh-hcCCeeEeEEeecccHHHHHHHHhhCCCceeecCc
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGAN-LAGLNLVTRWAVDINEYACQSLKLNHPETEVRNES 395 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~-~aG~~~~~~~avd~~~~A~~t~~~N~p~~~v~~~~ 395 (718)
..++|||.||.|.++..+..-+. +...+ +.|||+|+.|++..+.|.+...+++.|
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~---V~aVEID~~Al~~Ar~n~~~~~~~~~D 105 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPRE---IVCVELNHTYYKLGKRIVPEATWINAD 105 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcE---EEEEECCHHHHHHHHhhccCCEEEEcc
Confidence 56999999999999987732111 11233 369999999999999998876666543
No 46
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=95.75 E-value=0.056 Score=60.75 Aligned_cols=43 Identities=21% Similarity=0.290 Sum_probs=32.7
Q ss_pred ccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
..+|||||||+||+++.. ...|..-+ .+||+++.|.+..+.|.
T Consensus 221 g~rVLDlfsgtG~~~l~a----a~~ga~~V--~~VD~s~~al~~a~~N~ 263 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSA----LMGGCSQV--VSVDTSQEALDIARQNV 263 (396)
T ss_pred CCeEEEeccCCCHHHHHH----HhCCCCEE--EEEECCHHHHHHHHHHH
Confidence 457999999999987654 23454333 59999999998888775
No 47
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=95.71 E-value=0.013 Score=65.26 Aligned_cols=58 Identities=34% Similarity=0.403 Sum_probs=46.0
Q ss_pred ccceeccccccchhhHhHhhhhhh-cCCeeEeEEeecccHHHHHHHHhhC-----CCceeecCchHHHH
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANL-AGLNLVTRWAVDINEYACQSLKLNH-----PETEVRNESAEDFL 400 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~-aG~~~~~~~avd~~~~A~~t~~~N~-----p~~~v~~~~~~~~l 400 (718)
.+++||+|||+|.+++=+ +.+ .|.+.+ +++|+|+.|++..+.|. .+.++++.|+..++
T Consensus 45 ~~~vLD~faGsG~rgir~---a~e~~ga~~V--v~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l 108 (374)
T TIGR00308 45 YINIADALSASGIRAIRY---AHEIEGVREV--FANDINPKAVESIKNNVEYNSVENIEVPNEDAANVL 108 (374)
T ss_pred CCEEEECCCchhHHHHHH---HhhCCCCCEE--EEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHH
Confidence 589999999999877655 233 377666 79999999999998875 24678899988775
No 48
>PRK14967 putative methyltransferase; Provisional
Probab=95.67 E-value=0.14 Score=52.67 Aligned_cols=43 Identities=40% Similarity=0.530 Sum_probs=32.8
Q ss_pred ccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
..++||++||.|.++.-+ ...|..-+ .++|+++.+.+..+.|.
T Consensus 37 ~~~vLDlGcG~G~~~~~l----a~~~~~~v--~~vD~s~~~l~~a~~n~ 79 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAA----AAAGAGSV--TAVDISRRAVRSARLNA 79 (223)
T ss_pred CCeEEEecCCHHHHHHHH----HHcCCCeE--EEEECCHHHHHHHHHHH
Confidence 458999999999988766 33465222 59999999998777764
No 49
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=95.60 E-value=0.02 Score=58.39 Aligned_cols=56 Identities=23% Similarity=0.264 Sum_probs=39.4
Q ss_pred ccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC-----CCceeecCchHHH
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH-----PETEVRNESAEDF 399 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~-----p~~~v~~~~~~~~ 399 (718)
..++||||||+|.+++.+ +.+ |..-+ .+||+++.|++..+.|. .+..+++.|+.++
T Consensus 54 ~~~vLDl~~GsG~l~l~~---lsr-~a~~V--~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~ 114 (199)
T PRK10909 54 DARCLDCFAGSGALGLEA---LSR-YAAGA--TLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF 114 (199)
T ss_pred CCEEEEcCCCccHHHHHH---HHc-CCCEE--EEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH
Confidence 358999999999888743 122 22223 59999999999888873 2466777776554
No 50
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=95.48 E-value=0.023 Score=63.61 Aligned_cols=58 Identities=28% Similarity=0.261 Sum_probs=44.8
Q ss_pred ccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC-----CCceeecCchHHHH
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH-----PETEVRNESAEDFL 400 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~-----p~~~v~~~~~~~~l 400 (718)
..++||+|||+|.+++-+. ...|..-+ +++|+|+.|++..+.|. .+..+++.|++.++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a---~~~~~~~V--~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l 120 (382)
T PRK04338 58 RESVLDALSASGIRGIRYA---LETGVEKV--TLNDINPDAVELIKKNLELNGLENEKVFNKDANALL 120 (382)
T ss_pred CCEEEECCCcccHHHHHHH---HHCCCCEE--EEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHH
Confidence 4689999999999988773 34554333 79999999999998874 34558888887764
No 51
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=95.25 E-value=0.031 Score=56.36 Aligned_cols=60 Identities=30% Similarity=0.330 Sum_probs=45.2
Q ss_pred CccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC------CCceeecCchHHHH
Q 047980 335 QKMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH------PETEVRNESAEDFL 400 (718)
Q Consensus 335 ~~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~------p~~~v~~~~~~~~l 400 (718)
.....++||||||.|+|+ | +++ .-|...+ ..||.|..|+.+++.|- .+++++..|+..+|
T Consensus 41 ~i~g~~~LDlFAGSGaLG--l-EAl-SRGA~~~--~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L 106 (187)
T COG0742 41 EIEGARVLDLFAGSGALG--L-EAL-SRGAARV--VFVEKDRKAVKILKENLKALGLEGEARVLRNDALRAL 106 (187)
T ss_pred ccCCCEEEEecCCccHhH--H-HHH-hCCCceE--EEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHH
Confidence 356779999999999764 4 222 3455555 49999999999999993 57778888887654
No 52
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=95.24 E-value=0.03 Score=62.14 Aligned_cols=55 Identities=27% Similarity=0.414 Sum_probs=42.8
Q ss_pred cceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC-----CCceeecCchHHHH
Q 047980 339 VKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH-----PETEVRNESAEDFL 400 (718)
Q Consensus 339 ~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~-----p~~~v~~~~~~~~l 400 (718)
.++||||||.|+++..|..+ +.-+ .+||+++.|++..+.|. .+..+++.|+.+++
T Consensus 208 ~~vLDl~~G~G~~sl~la~~-----~~~v--~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l 267 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN-----FRRV--LATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFT 267 (362)
T ss_pred CeEEEEeccccHHHHHHHhh-----CCEE--EEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHH
Confidence 35999999999999977422 2333 69999999999888873 25678889998775
No 53
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=95.20 E-value=0.1 Score=59.48 Aligned_cols=46 Identities=22% Similarity=0.160 Sum_probs=34.7
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
...++||+|||.||.++-+...+...| .+ +|+|+++...+..+.|.
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~-~V---~avD~s~~~l~~~~~~~ 295 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRG-QI---TAVDRYPQKLEKIRSHA 295 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCc-EE---EEEECCHHHHHHHHHHH
Confidence 346899999999999987753322223 33 69999999999888874
No 54
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=94.75 E-value=0.13 Score=58.58 Aligned_cols=47 Identities=23% Similarity=0.289 Sum_probs=34.9
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
+...+|||++||.||.++-+..-+...| .+ .|+|+++..++..+.|.
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g-~v---~a~D~~~~rl~~~~~n~ 297 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQG-EI---WAVDRSASRLKKLQENA 297 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCc-eE---EEEcCCHHHHHHHHHHH
Confidence 3446899999999999988843221123 33 59999999999888874
No 55
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=94.74 E-value=0.026 Score=61.99 Aligned_cols=44 Identities=34% Similarity=0.476 Sum_probs=35.8
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
..-+|+|+|||.|-+|.-+ ...|-.-+ .|+|+||+|++-++.|-
T Consensus 188 ~GE~V~DmFAGVGpfsi~~----Ak~g~~~V--~A~diNP~A~~~L~eNi 231 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPI----AKKGRPKV--YAIDINPDAVEYLKENI 231 (341)
T ss_pred CCCEEEEccCCcccchhhh----hhcCCceE--EEEecCHHHHHHHHHHH
Confidence 3668999999999999877 45554323 79999999999999883
No 56
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=94.63 E-value=0.0069 Score=48.01 Aligned_cols=35 Identities=49% Similarity=0.904 Sum_probs=29.8
Q ss_pred ccceeeEeeccCCCCCCCCcccccccccccchhhh
Q 047980 473 RGLYLKVRWRNYGPSEDTWEPIEGLSNCGEKIKEF 507 (718)
Q Consensus 473 ~~l~~~~~w~~~~~~~d~w~~~~~~~~~~~~i~e~ 507 (718)
..+.+.|.|+|+...++||++..+|..+...|.+|
T Consensus 18 ~~~~y~VkW~g~~~~~~tWe~~~~l~~~~~~i~~~ 52 (55)
T cd00024 18 GEYEYLVKWKGYSYSEDTWEPEENLEDCKELIDEF 52 (55)
T ss_pred CcEEEEEEECCCCCccCccccHHHhCchHHHHHHH
Confidence 56788999999999999999999888776666655
No 57
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=94.47 E-value=0.12 Score=58.58 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=35.2
Q ss_pred ccccceeccccccchhhHhHhhhhhhc-CCeeEeEEeecccHHHHHHHHhhCC
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLA-GLNLVTRWAVDINEYACQSLKLNHP 387 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~a-G~~~~~~~avd~~~~A~~t~~~N~p 387 (718)
....++|||+||.||.++-+. +.. +..+ +|+|+++.+.+..+.|..
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la---~~~~~~~v---~a~D~s~~~l~~~~~n~~ 289 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHIL---ELAPQAQV---VALDIDAQRLERVRENLQ 289 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHH---HHcCCCEE---EEEeCCHHHHHHHHHHHH
Confidence 345689999999999998773 222 2333 699999999999988853
No 58
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=94.26 E-value=0.058 Score=59.70 Aligned_cols=54 Identities=30% Similarity=0.422 Sum_probs=41.8
Q ss_pred ceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC-----CCceeecCchHHHH
Q 047980 340 KLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH-----PETEVRNESAEDFL 400 (718)
Q Consensus 340 ~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~-----p~~~v~~~~~~~~l 400 (718)
++||||||.|.++.-|..+ + .-+ .+||+++.|++..+.|. .+..+++.|+.+++
T Consensus 200 ~vlDl~~G~G~~sl~la~~---~--~~v--~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~ 258 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQN---F--RRV--LATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFT 258 (353)
T ss_pred cEEEEeccccHHHHHHHHh---C--CEE--EEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHH
Confidence 5999999999999977432 2 223 59999999999888874 24667888887764
No 59
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=94.07 E-value=0.9 Score=47.72 Aligned_cols=46 Identities=30% Similarity=0.346 Sum_probs=34.4
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
....++||+.||.|.++.-+... ....++ .++|+++.+++..+.|.
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~--~~~~~v---~~iDis~~~l~~a~~n~ 152 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKE--RPDAEV---TAVDISPEALAVARRNA 152 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHH--CCCCEE---EEEECCHHHHHHHHHHH
Confidence 34568999999999988877321 112333 69999999999988884
No 60
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=93.97 E-value=0.48 Score=48.87 Aligned_cols=45 Identities=29% Similarity=0.327 Sum_probs=33.4
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
...++||+.||.|.++.-+.. ...+..+ .++|+++.+++..+.|.
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~--~~~~~~v---~~iD~~~~~~~~a~~~~ 131 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAK--ERPDARV---TAVDISPEALAVARKNA 131 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHH--HCCCCEE---EEEECCHHHHHHHHHHH
Confidence 345899999999998887732 1123444 59999999998887773
No 61
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=93.90 E-value=0.11 Score=59.24 Aligned_cols=45 Identities=22% Similarity=0.224 Sum_probs=33.7
Q ss_pred ccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
.-++||++||.||.++-+..-+...| .+ .|+|+++.+.+..+.|.
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~~-~v---~avDi~~~~l~~~~~n~ 295 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNTG-KV---VALDIHEHKLKLIEENA 295 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCC-EE---EEEeCCHHHHHHHHHHH
Confidence 45899999999999988743111122 33 59999999999888874
No 62
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=93.61 E-value=0.57 Score=47.57 Aligned_cols=45 Identities=11% Similarity=0.089 Sum_probs=33.9
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
...++|||.||.|.++..|.. ...+.++ ++||+++.+++..+.|.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~--~~p~~~v---~gVD~s~~~i~~a~~~~ 84 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAK--ANPDINF---IGIEVHEPGVGKALKKI 84 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHH--HCCCccE---EEEEechHHHHHHHHHH
Confidence 456899999999999988832 1123343 69999999998887764
No 63
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=93.42 E-value=0.095 Score=51.47 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=42.0
Q ss_pred ccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCC---CceeecCchHH
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHP---ETEVRNESAED 398 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p---~~~v~~~~~~~ 398 (718)
..++||++||.|.++.-+. ..+.++ +|||+|+.+++..+.|+. +.++++.|+.+
T Consensus 14 ~~~vLEiG~G~G~lt~~l~----~~~~~v---~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~ 70 (169)
T smart00650 14 GDTVLEIGPGKGALTEELL----ERAARV---TAIEIDPRLAPRLREKFAAADNLTVIHGDALK 70 (169)
T ss_pred cCEEEEECCCccHHHHHHH----hcCCeE---EEEECCHHHHHHHHHHhccCCCEEEEECchhc
Confidence 3479999999999998883 335444 599999999999999864 46677776644
No 64
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=93.30 E-value=0.069 Score=59.11 Aligned_cols=39 Identities=36% Similarity=0.480 Sum_probs=28.3
Q ss_pred ceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhh
Q 047980 340 KLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLN 385 (718)
Q Consensus 340 ~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N 385 (718)
.+||||||+|-+|+-| ...+-+ | .|||+++.|++.-+.|
T Consensus 199 ~vlDlycG~G~fsl~l----a~~~~~-V--~gvE~~~~av~~A~~N 237 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPL----AKKAKK-V--IGVEIVEEAVEDAREN 237 (352)
T ss_dssp EEEEES-TTTCCHHHH----HCCSSE-E--EEEES-HHHHHHHHHH
T ss_pred cEEEEeecCCHHHHHH----HhhCCe-E--EEeeCCHHHHHHHHHH
Confidence 6999999999999888 233333 3 5999999988776666
No 65
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=93.25 E-value=1.3 Score=51.42 Aligned_cols=44 Identities=30% Similarity=0.356 Sum_probs=34.5
Q ss_pred ccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
..++||++||.|.++..+.. ...+.++ .|+|+++.|++..+.|.
T Consensus 139 ~~~VLDlG~GsG~iai~la~--~~p~~~v---~avDis~~al~~A~~N~ 182 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLC--ELPNANV---IATDISLDAIEVAKSNA 182 (506)
T ss_pred CCEEEEccCchhHHHHHHHH--HCCCCeE---EEEECCHHHHHHHHHHH
Confidence 45899999999999987732 2234554 59999999999988883
No 66
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=93.10 E-value=0.51 Score=51.60 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=33.2
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
+...++||+|||.|++..-+ ...|..+ .++|+|+.+....+.|.
T Consensus 181 ~~g~~vLDp~cGtG~~liea----a~~~~~v---~g~Di~~~~~~~a~~nl 224 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEA----GLMGAKV---IGCDIDWKMVAGARINL 224 (329)
T ss_pred CCcCEEEECCCCCCHHHHHH----HHhCCeE---EEEcCCHHHHHHHHHHH
Confidence 34558999999999886543 3456665 59999999988777773
No 67
>PRK14968 putative methyltransferase; Provisional
Probab=92.86 E-value=1.5 Score=42.85 Aligned_cols=43 Identities=28% Similarity=0.386 Sum_probs=34.1
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
...++||+.||.|.++..+ ...|.++ .++|+++.+.+..+.|.
T Consensus 23 ~~~~vLd~G~G~G~~~~~l----~~~~~~v---~~~D~s~~~~~~a~~~~ 65 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVA----AKNGKKV---VGVDINPYAVECAKCNA 65 (188)
T ss_pred CCCEEEEEccccCHHHHHH----HhhcceE---EEEECCHHHHHHHHHHH
Confidence 3457999999999998887 3336665 59999999998887774
No 68
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=92.58 E-value=0.07 Score=57.12 Aligned_cols=43 Identities=28% Similarity=0.485 Sum_probs=37.0
Q ss_pred cceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 339 VKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 339 ~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
-.++|||+|+|=+.+-| +-.+|.+.| +|+|+|++|.+++++|-
T Consensus 196 eviVDLYAGIGYFTlpf---lV~agAk~V--~A~EwNp~svEaLrR~~ 238 (351)
T KOG1227|consen 196 EVIVDLYAGIGYFTLPF---LVTAGAKTV--FACEWNPWSVEALRRNA 238 (351)
T ss_pred chhhhhhcccceEEeeh---hhccCccEE--EEEecCHHHHHHHHHHH
Confidence 57899999999999844 267888876 89999999999999983
No 69
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=92.44 E-value=1 Score=38.00 Aligned_cols=39 Identities=31% Similarity=0.391 Sum_probs=29.6
Q ss_pred ceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHh
Q 047980 340 KLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKL 384 (718)
Q Consensus 340 ~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~ 384 (718)
+++|+.||.|+++..+.. ..+.++ .++|+++.+....+.
T Consensus 1 ~ildig~G~G~~~~~~~~---~~~~~~---~~~d~~~~~~~~~~~ 39 (107)
T cd02440 1 RVLDLGCGTGALALALAS---GPGARV---TGVDISPVALELARK 39 (107)
T ss_pred CeEEEcCCccHHHHHHhc---CCCCEE---EEEeCCHHHHHHHHH
Confidence 589999999999988842 233333 699999999887763
No 70
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=92.42 E-value=0.33 Score=55.27 Aligned_cols=46 Identities=20% Similarity=0.167 Sum_probs=34.6
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
...+|||+|||.||.++-+..-+.. +..+ +|+|+++...+..+.|.
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V---~a~Dis~~rl~~~~~n~ 282 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKD-QGKI---LAVDISREKIQLVEKHA 282 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCC-CCEE---EEEECCHHHHHHHHHHH
Confidence 3458999999999999877422111 3344 59999999999998884
No 71
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=91.88 E-value=0.33 Score=52.78 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=33.8
Q ss_pred cceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 339 VKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 339 ~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
.++||++||.|.++..+.. ...+.++ .|+|+++.|.+..+.|.
T Consensus 135 ~~VLDlG~GsG~iai~la~--~~p~~~V---~avDis~~al~~A~~n~ 177 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAY--AFPDAEV---DAVDISPDALAVAEINI 177 (307)
T ss_pred CEEEEEechhhHHHHHHHH--HCCCCEE---EEEeCCHHHHHHHHHHH
Confidence 5799999999999988832 1123444 59999999999999884
No 72
>KOG1911 consensus Heterochromatin-associated protein HP1 and related CHROMO domain proteins [Chromatin structure and dynamics]
Probab=91.72 E-value=0.11 Score=55.25 Aligned_cols=54 Identities=39% Similarity=0.647 Sum_probs=43.0
Q ss_pred hhHHHHHHHHhHhcCCchhhhcccceeeEeeccCCCCCCCCcccccccccccchhhhhhc
Q 047980 451 SEIFEVEKILKICYGDPKEIKKRGLYLKVRWRNYGPSEDTWEPIEGLSNCGEKIKEFVTH 510 (718)
Q Consensus 451 ~~~~~v~~l~~i~~g~p~~~~~~~l~~~~~w~~~~~~~d~w~~~~~~~~~~~~i~e~~~~ 510 (718)
.++|.|+++++- ...+..+.+-|.|+||....+||+|...+.+|++.|.+|...
T Consensus 46 ~~~~vvEki~~~------r~~~g~~eYlvkW~Gy~~~~ntWEPee~~~~C~~li~~~~~~ 99 (270)
T KOG1911|consen 46 EEEYVVEKILKR------RKKNGKIEYLVKWKGYPDPDNTWEPEEHNLDCPELIDEFEKS 99 (270)
T ss_pred cchhhhhhhhhc------cccCCCceeeeecCCCCCccccCCchhhccccHHHHHHHHHH
Confidence 456788888764 222233667899999999999999999899999999999754
No 73
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=91.57 E-value=0.26 Score=48.59 Aligned_cols=45 Identities=36% Similarity=0.323 Sum_probs=36.1
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
...++|||.||+|.++.-+ ...+-+.. +.++|+++.|.+..+.|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~l----a~~~~~~~-v~~vDi~~~a~~~a~~n~ 75 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLAL----AKRGPDAK-VTAVDINPDALELAKRNA 75 (170)
T ss_dssp TTCEEEEETSTTSHHHHHH----HHTSTCEE-EEEEESBHHHHHHHHHHH
T ss_pred cCCeEEEecCChHHHHHHH----HHhCCCCE-EEEEcCCHHHHHHHHHHH
Confidence 5668999999999999887 44444432 379999999999999884
No 74
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=91.43 E-value=0.057 Score=43.10 Aligned_cols=33 Identities=52% Similarity=0.949 Sum_probs=28.8
Q ss_pred ceeeEeeccCCCCCCCCccccccccc-ccchhhh
Q 047980 475 LYLKVRWRNYGPSEDTWEPIEGLSNC-GEKIKEF 507 (718)
Q Consensus 475 l~~~~~w~~~~~~~d~w~~~~~~~~~-~~~i~e~ 507 (718)
+.+.|.|+|+..+++||++..++.++ ++.|.+|
T Consensus 19 ~~ylVkW~g~~~~~~tWe~~~~l~~~~~~li~~f 52 (55)
T PF00385_consen 19 YEYLVKWKGYPYSENTWEPEENLKNCFPELIEEF 52 (55)
T ss_dssp EEEEEEETTSSGGGEEEEEGGGCSSHCHHHHHHH
T ss_pred EEEEEEECCCCCCCCeEeeHHHHhHhhHHHHHHH
Confidence 58999999999999999999999887 5657766
No 75
>PRK03612 spermidine synthase; Provisional
Probab=91.41 E-value=2.3 Score=49.69 Aligned_cols=87 Identities=15% Similarity=0.043 Sum_probs=51.7
Q ss_pred CCccEEEecCCCCccccccccCCCCCCcccchhhHH-HHHH-HHhhhcCCcEEEEecchhhhhcccchHHHHHHHHHHhC
Q 047980 521 GDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQL-IVFM-DIVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQM 598 (718)
Q Consensus 521 ~~vDll~gGPPCQ~fS~ag~~r~~~~~~~D~rn~L~-~~~~-riv~~~kPk~~v~ENV~gll~~~~g~~~~~i~~~L~~l 598 (718)
...|+|+..+|-...... +.|+ .+|+ .+.+.++|.-+++=|...-. .....+..+.+.|++.
T Consensus 372 ~~fDvIi~D~~~~~~~~~--------------~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~--~~~~~~~~i~~~l~~~ 435 (521)
T PRK03612 372 EKFDVIIVDLPDPSNPAL--------------GKLYSVEFYRLLKRRLAPDGLLVVQSTSPY--FAPKAFWSIEATLEAA 435 (521)
T ss_pred CCCCEEEEeCCCCCCcch--------------hccchHHHHHHHHHhcCCCeEEEEecCCcc--cchHHHHHHHHHHHHc
Confidence 468999988664221100 1122 2344 34456799877665543211 1134567788999999
Q ss_pred CceEEEEEEeccccCCCCCCcEEEEEEecC
Q 047980 599 NYQVRMGMMAAGAYGLPQFRMRVFLWGAQP 628 (718)
Q Consensus 599 GY~v~~~vLnA~dyGvPQ~R~R~fivg~r~ 628 (718)
|+.+.....+-..|| ..-|++|++.
T Consensus 436 gf~v~~~~~~vps~g-----~w~f~~as~~ 460 (521)
T PRK03612 436 GLATTPYHVNVPSFG-----EWGFVLAGAG 460 (521)
T ss_pred CCEEEEEEeCCCCcc-----hhHHHeeeCC
Confidence 996666555555554 6778898764
No 76
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=91.26 E-value=0.34 Score=43.36 Aligned_cols=54 Identities=24% Similarity=0.284 Sum_probs=42.3
Q ss_pred ccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC------CCceeecCch
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH------PETEVRNESA 396 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~------p~~~v~~~~~ 396 (718)
.-++|||=||.|.++.-|.. ...|.+++ |||+++.+.+..+.|. +...+++.|+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~--~~~~~~v~---gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~ 61 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALAR--LFPGARVV---GVDISPEMLEIARERAAEEGLSDRITFVQGDA 61 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHH--HHTTSEEE---EEESSHHHHHHHHHHHHHTTTTTTEEEEESCC
T ss_pred CCEEEEEcCcCCHHHHHHHh--cCCCCEEE---EEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc
Confidence 45799999999999988832 23788864 9999999999999887 4555666555
No 77
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=91.21 E-value=1.1 Score=48.43 Aligned_cols=43 Identities=28% Similarity=0.300 Sum_probs=32.8
Q ss_pred ccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
..+||||||=.||+|+-. ..+|..-+ ++||+++.|.+..+.|+
T Consensus 124 gkrvLnlFsYTGgfsv~A----a~gGA~~v--~~VD~S~~al~~a~~N~ 166 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAA----AAGGAKEV--VSVDSSKRALEWAKENA 166 (286)
T ss_dssp TCEEEEET-TTTHHHHHH----HHTTESEE--EEEES-HHHHHHHHHHH
T ss_pred CCceEEecCCCCHHHHHH----HHCCCCEE--EEEeCCHHHHHHHHHHH
Confidence 459999999999888754 56776555 59999999998888774
No 78
>PRK07402 precorrin-6B methylase; Provisional
Probab=90.95 E-value=0.41 Score=48.12 Aligned_cols=57 Identities=23% Similarity=0.233 Sum_probs=40.6
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC-----CCceeecCchHH
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH-----PETEVRNESAED 398 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~-----p~~~v~~~~~~~ 398 (718)
..-++||++||.|.++..+.. ...+.++ .+||+++.+++..+.|. .+..+++.|+.+
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~--~~~~~~V---~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~ 101 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGL--LCPKGRV---IAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPE 101 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHH--HCCCCEE---EEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHH
Confidence 345899999999999887731 1123444 59999999998888764 345666666644
No 79
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=90.85 E-value=0.44 Score=54.04 Aligned_cols=45 Identities=24% Similarity=0.241 Sum_probs=35.1
Q ss_pred ccccceeccccccchhhHhHhhhhhhcC-CeeEeEEeecccHHHHHHHHhhC
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAG-LNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG-~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
....+|||++||.||.++=+.. ..+ .++ +|+|+++..++..+.|.
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~---~~~~~~v---~a~D~~~~~l~~~~~n~ 282 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILE---LAPQAQV---VALDIHEHRLKRVYENL 282 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHH---HcCCCeE---EEEeCCHHHHHHHHHHH
Confidence 3456899999999999987742 233 333 69999999999998885
No 80
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=90.57 E-value=0.055 Score=42.66 Aligned_cols=47 Identities=49% Similarity=0.848 Sum_probs=34.7
Q ss_pred HHHHHhHhcCCchhhhcccceeeEeeccCCCCCCCCcccccccccccchhhh
Q 047980 456 VEKILKICYGDPKEIKKRGLYLKVRWRNYGPSEDTWEPIEGLSNCGEKIKEF 507 (718)
Q Consensus 456 v~~l~~i~~g~p~~~~~~~l~~~~~w~~~~~~~d~w~~~~~~~~~~~~i~e~ 507 (718)
|++|++... ..+..+.|.|.|+|+...++||.+..++..+...|.+|
T Consensus 4 v~~Il~~r~-----~~~~~~~ylVkW~g~~~~~~tW~~~~~l~~~~~~v~~~ 50 (55)
T smart00298 4 VEKILDHRW-----KKKGELEYLVKWKGYSYSEDTWEPEENLLNCSKKLDNY 50 (55)
T ss_pred hheeeeeee-----cCCCcEEEEEEECCCCCccCceeeHHHHHHHHHHHHHH
Confidence 556665532 12345788999999999999999999887666666655
No 81
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=90.54 E-value=0.36 Score=46.25 Aligned_cols=59 Identities=29% Similarity=0.294 Sum_probs=42.7
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhh-----CCCceeecCchHH
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLN-----HPETEVRNESAED 398 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N-----~p~~~v~~~~~~~ 398 (718)
+...++|||-||.|.+...|.. ....+.++ ++||+++.+++..+.+ +++.++.+.|+.+
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~-~~~~~~~i---~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~ 65 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAK-ELNPGAKI---IGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED 65 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHH-HSTTTSEE---EEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC
T ss_pred CCCCEEEEecCcCcHHHHHHHH-hcCCCCEE---EEEECcHHHHHHhhcccccccccccceEEeehhc
Confidence 4578999999999999999831 01225564 5999999999887773 4567777777754
No 82
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=90.32 E-value=0.46 Score=50.15 Aligned_cols=42 Identities=29% Similarity=0.348 Sum_probs=31.6
Q ss_pred ccceeccccccchhhHhHhhhhhhcC-CeeEeEEeecccHHHHHHHHhh
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAG-LNLVTRWAVDINEYACQSLKLN 385 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG-~~~~~~~avd~~~~A~~t~~~N 385 (718)
.-++|||.||+|.+++-+. .+-. .++ .+||+++.+.+--+.|
T Consensus 45 ~~~IlDlGaG~G~l~L~la---~r~~~a~I---~~VEiq~~~a~~A~~n 87 (248)
T COG4123 45 KGRILDLGAGNGALGLLLA---QRTEKAKI---VGVEIQEEAAEMAQRN 87 (248)
T ss_pred CCeEEEecCCcCHHHHHHh---ccCCCCcE---EEEEeCHHHHHHHHHH
Confidence 7789999999999988773 3322 454 4999999877666555
No 83
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=89.97 E-value=0.3 Score=52.44 Aligned_cols=42 Identities=33% Similarity=0.400 Sum_probs=34.4
Q ss_pred ceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 340 KLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 340 ~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
++|||+||.|..+.++ ...+-+. .++|+|+|+.|++.-+.|-
T Consensus 113 ~ilDlGTGSG~iai~l----a~~~~~~-~V~a~Dis~~Al~~A~~Na 154 (280)
T COG2890 113 RILDLGTGSGAIAIAL----AKEGPDA-EVIAVDISPDALALARENA 154 (280)
T ss_pred cEEEecCChHHHHHHH----HhhCcCC-eEEEEECCHHHHHHHHHHH
Confidence 8999999999999998 4444432 2379999999999999883
No 84
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=88.73 E-value=0.46 Score=53.24 Aligned_cols=60 Identities=28% Similarity=0.358 Sum_probs=49.3
Q ss_pred CCccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCC------C-ceeecCchHHHH
Q 047980 334 PQKMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHP------E-TEVRNESAEDFL 400 (718)
Q Consensus 334 ~~~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p------~-~~v~~~~~~~~l 400 (718)
..+..-.+.|+|||+|-++.-+ ..-|..+ .|+|.|+.+.+-++.|.+ . ..++|.|+.+||
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa----~kK~crV---~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPA----AKKGCRV---YANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred ccCCcchhhhhhcCcCccccch----hhcCcEE---EecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 3456668999999999888765 4556544 699999999999999975 3 788999999998
No 85
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=88.32 E-value=1.2 Score=51.36 Aligned_cols=47 Identities=19% Similarity=0.212 Sum_probs=36.4
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
+...+|||+|||.||-|+-|..-+...| .+ +|+|+++.-++.++.|.
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g-~l---vA~D~~~~R~~~L~~nl 158 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQG-AI---VANEYSASRVKVLHANI 158 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCC-EE---EEEeCCHHHHHHHHHHH
Confidence 4556899999999999998843333345 23 69999999999998884
No 86
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=88.00 E-value=0.61 Score=49.65 Aligned_cols=55 Identities=18% Similarity=0.166 Sum_probs=43.2
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC--CCceeecCchHH
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH--PETEVRNESAED 398 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~--p~~~v~~~~~~~ 398 (718)
...++||+-||.|.++.-| ...|.++ .|+|+|+.+++.++.|+ ++..+++.|+.+
T Consensus 42 ~~~~VLEiG~G~G~lt~~L----~~~~~~v---~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~ 98 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPL----LERAAKV---TAVEIDRDLAPILAETFAEDNLTIIEGDALK 98 (272)
T ss_pred CcCeEEEeCCCccHHHHHH----HHhCCcE---EEEECCHHHHHHHHHhhccCceEEEEChhhc
Confidence 3458999999999999888 3445454 59999999999999887 566777776644
No 87
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=87.92 E-value=0.64 Score=48.79 Aligned_cols=55 Identities=20% Similarity=0.175 Sum_probs=42.8
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC---CCceeecCchHH
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH---PETEVRNESAED 398 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~---p~~~v~~~~~~~ 398 (718)
...++||+.||.|.++.-| ...+-.+ .++|+|+..++.++.++ ++..+.+.|+.+
T Consensus 29 ~~~~VLEiG~G~G~lt~~L----~~~~~~v---~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~ 86 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPL----LKRAKKV---TAIEIDPRLAEILRKLLSLYERLEVIEGDALK 86 (253)
T ss_pred CcCEEEEeCCCCCHHHHHH----HHhCCcE---EEEECCHHHHHHHHHHhCcCCcEEEEECchhc
Confidence 4568999999999999998 3445443 59999999999998886 456677766643
No 88
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=87.56 E-value=7.9 Score=43.69 Aligned_cols=43 Identities=30% Similarity=0.397 Sum_probs=35.5
Q ss_pred ccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
.-+||+|||=.||+|.-. ..+|-.-+| +||++..|.+.-+.|+
T Consensus 218 GkrvLNlFsYTGgfSv~A----a~gGA~~vt--~VD~S~~al~~a~~N~ 260 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHA----ALGGASEVT--SVDLSKRALEWARENA 260 (393)
T ss_pred CCeEEEecccCcHHHHHH----HhcCCCceE--EEeccHHHHHHHHHHH
Confidence 557999999999888655 678884443 9999999999888886
No 89
>KOG2730 consensus Methylase [General function prediction only]
Probab=87.27 E-value=0.82 Score=47.32 Aligned_cols=58 Identities=21% Similarity=0.334 Sum_probs=42.2
Q ss_pred cceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC-----C-CceeecCchHHHHHHHHHH
Q 047980 339 VKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH-----P-ETEVRNESAEDFLTLLREW 406 (718)
Q Consensus 339 ~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~-----p-~~~v~~~~~~~~l~~lke~ 406 (718)
-.+||-|||+||-.+=| ...|..|. |||||+.-+..-++|- | ...++++|. |.+.+-|
T Consensus 96 ~~iidaf~g~gGntiqf----a~~~~~Vi---sIdiDPikIa~AkhNaeiYGI~~rItFI~GD~---ld~~~~l 159 (263)
T KOG2730|consen 96 EVIVDAFCGVGGNTIQF----ALQGPYVI---AIDIDPVKIACARHNAEVYGVPDRITFICGDF---LDLASKL 159 (263)
T ss_pred chhhhhhhcCCchHHHH----HHhCCeEE---EEeccHHHHHHHhccceeecCCceeEEEechH---HHHHHHH
Confidence 36899999999999988 55677654 9999999988888884 3 344555544 4444444
No 90
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=87.13 E-value=0.71 Score=49.55 Aligned_cols=44 Identities=25% Similarity=0.339 Sum_probs=34.5
Q ss_pred ccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
..++|||+||.|.++..+.. ...+.++ .|+|+++.|++..+.|.
T Consensus 122 ~~~vLDlG~GsG~i~~~la~--~~~~~~v---~avDis~~al~~A~~n~ 165 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAY--AFPEAEV---DAVDISPDALAVAEINI 165 (284)
T ss_pred CCEEEEEeCchhHHHHHHHH--HCCCCEE---EEEECCHHHHHHHHHHH
Confidence 45899999999999988842 1124454 59999999999998884
No 91
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=87.01 E-value=1.1 Score=45.27 Aligned_cols=59 Identities=20% Similarity=0.189 Sum_probs=38.9
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC------CCceeecCchHHH
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH------PETEVRNESAEDF 399 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~------p~~~v~~~~~~~~ 399 (718)
...++||+.||+|.++.-+...+ ..+.++ .++|+++.+++..+.|. .+..+++.|+.++
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~-~~~~~v---~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~ 104 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLV-GETGKV---YAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI 104 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHh-CCCCEE---EEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh
Confidence 44589999999999998773211 112343 59999999988766552 2345555555443
No 92
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=86.93 E-value=0.099 Score=58.23 Aligned_cols=91 Identities=13% Similarity=0.014 Sum_probs=78.7
Q ss_pred eEEEECCEEEEecCCeEEEecCC-CCCCeEEEEeEEeecCCCceEEEEEEEEecccCccccccccCCCCceEeeCCcccc
Q 047980 179 MWAEVDGHITYDLFDDAHVKAES-GEEDYICKIVEMFEAVDGTPYFTAQWYYRARDTVIESNAHLIDQRRVFFSEIQNDN 257 (718)
Q Consensus 179 ~s~~v~G~~~y~vGD~VyV~~~~-~~p~yIgrI~~iwe~~~g~~~v~v~WFyRpeET~~~~~~~~~d~rELF~S~~~d~~ 257 (718)
..+.+.+. ...+|+++++.+.. ...+.++.+...|.+.+...+.-++|||||++++ ......+..+++......+.+
T Consensus 268 ~~~~i~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 345 (371)
T COG5076 268 ESVLITNS-QAHVGAWPFLRPVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEETF-VRDAKLFFDNCVMYNGEVTDY 345 (371)
T ss_pred hhhccccc-ccccccccccccCCcccccchhhhhhcccccccchhhhhcccCCCcccc-ccccchhhhcccccchhhhhh
Confidence 35777887 89999999999875 5666999999999999998888999999999777 555777888999999999999
Q ss_pred ccccccceeEEEee
Q 047980 258 PLECLVKKLNIARV 271 (718)
Q Consensus 258 ~l~~I~gKC~V~~~ 271 (718)
.+..+.+.|.|...
T Consensus 346 ~~~~~~~~~~~~~~ 359 (371)
T COG5076 346 YKNANVLEDFVIKK 359 (371)
T ss_pred hhhccchhhhHhhh
Confidence 99999999988763
No 93
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=86.88 E-value=0.69 Score=49.30 Aligned_cols=43 Identities=35% Similarity=0.390 Sum_probs=34.3
Q ss_pred ccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhh
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLN 385 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N 385 (718)
...++||+||.|.+|+++..++ + -.+.-|||..+.|...-..|
T Consensus 149 ~~~ildlgtGSGaIslsll~~L---~--~~~v~AiD~S~~Ai~La~eN 191 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGL---P--QCTVTAIDVSKAAIKLAKEN 191 (328)
T ss_pred cceEEEecCCccHHHHHHHhcC---C--CceEEEEeccHHHHHHHHHH
Confidence 3479999999999999995443 2 22346999999999988888
No 94
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=86.36 E-value=0.78 Score=48.45 Aligned_cols=54 Identities=17% Similarity=0.259 Sum_probs=41.2
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCC---CceeecCchH
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHP---ETEVRNESAE 397 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p---~~~v~~~~~~ 397 (718)
..-++||+.||.|.++.-|. ..+.++ .+||+|+..++..+.+.. +..+++.|+.
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~----~~~~~v---~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~ 85 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELA----KRAKKV---YAIELDPRLAEFLRDDEIAAGNVEIIEGDAL 85 (258)
T ss_pred CcCeEEEEeCccCHHHHHHH----HhCCEE---EEEECCHHHHHHHHHHhccCCCEEEEEeccc
Confidence 34689999999999999883 345554 599999999998888753 4556666553
No 95
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=86.16 E-value=1.2 Score=49.89 Aligned_cols=60 Identities=30% Similarity=0.331 Sum_probs=43.0
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC------C-CceeecCchHHHH
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH------P-ETEVRNESAEDFL 400 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~------p-~~~v~~~~~~~~l 400 (718)
.++++||.+||+|--+.=+.. +..|..-+ |++|+|+.|++..+.|. . ...+.+.|++.+|
T Consensus 49 ~~~~~lDalaasGvR~iRy~~--E~~~~~~v--~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll 115 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAK--ELAGVDKV--TANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLL 115 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHH--H-SSECEE--EEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHH
T ss_pred CCceEEeccccccHHHHHHHH--HcCCCCEE--EEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHh
Confidence 468999999999977766632 33676654 89999999999999994 2 2567788998875
No 96
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=86.03 E-value=3.1 Score=47.66 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=30.3
Q ss_pred ccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHH
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLK 383 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~ 383 (718)
..++|||.||.|.++..|. ..+.++ .+||+++.+++.-+
T Consensus 38 ~~~vLDlGcG~G~~~~~la----~~~~~v---~giD~s~~~l~~a~ 76 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELA----KKAGQV---IALDFIESVIKKNE 76 (475)
T ss_pred CCEEEEeCCCcCHHHHHHH----hhCCEE---EEEeCCHHHHHHHH
Confidence 4589999999999999883 344454 59999999886533
No 97
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=85.51 E-value=1.3 Score=39.35 Aligned_cols=57 Identities=26% Similarity=0.290 Sum_probs=38.6
Q ss_pred eeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC----CCceeecCchHHH
Q 047980 341 LLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH----PETEVRNESAEDF 399 (718)
Q Consensus 341 ~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~----p~~~v~~~~~~~~ 399 (718)
+|||=||.|.....|...+ .+|... ..++||+++.+.+..+.++ +.+.++..|+.++
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~~~~~~-~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l 61 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-DAGPSS-RVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDL 61 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS------S-EEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCH
T ss_pred CEEeecCCcHHHHHHHHHh-hhcccc-eEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHC
Confidence 6899999999998885433 346322 2379999999999888887 6778888877653
No 98
>PRK01581 speE spermidine synthase; Validated
Probab=85.08 E-value=40 Score=37.84 Aligned_cols=92 Identities=13% Similarity=0.003 Sum_probs=54.2
Q ss_pred CCccEEEecCCCCccccccccCCCCCCcccchhhHH-HHHHHH-hhhcCCcEEEEecchhhhhcccchHHHHHHHHHHhC
Q 047980 521 GDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQL-IVFMDI-VDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQM 598 (718)
Q Consensus 521 ~~vDll~gGPPCQ~fS~ag~~r~~~~~~~D~rn~L~-~~~~ri-v~~~kPk~~v~ENV~gll~~~~g~~~~~i~~~L~~l 598 (718)
+..|+|+.-+| .+. + ..-+.|+ .+|++. -+.++|.-+++=+....... ...+..+.+.|.+.
T Consensus 225 ~~YDVIIvDl~-DP~---~----------~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~--~~~~~~i~~tL~~a 288 (374)
T PRK01581 225 SLYDVIIIDFP-DPA---T----------ELLSTLYTSELFARIATFLTEDGAFVCQSNSPADA--PLVYWSIGNTIEHA 288 (374)
T ss_pred CCccEEEEcCC-Ccc---c----------cchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhh--HHHHHHHHHHHHHh
Confidence 46899998754 111 1 0112344 455554 45579986654332222111 23445578889999
Q ss_pred CceEEEEEEeccccCCCCCCcEEEEEEecCCCCC
Q 047980 599 NYQVRMGMMAAGAYGLPQFRMRVFLWGAQPTEKL 632 (718)
Q Consensus 599 GY~v~~~vLnA~dyGvPQ~R~R~fivg~r~~~~~ 632 (718)
|+.+.........||- ...|++|++....+
T Consensus 289 f~~v~~y~t~vPsyg~----~WgF~~as~~~~~~ 318 (374)
T PRK01581 289 GLTVKSYHTIVPSFGT----DWGFHIAANSAYVL 318 (374)
T ss_pred CCceEEEEEecCCCCC----ceEEEEEeCCcccc
Confidence 9988776666666754 28899998765544
No 99
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=84.58 E-value=1.3 Score=45.06 Aligned_cols=44 Identities=30% Similarity=0.288 Sum_probs=35.1
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCC
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHP 387 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p 387 (718)
...++||+.||.|.++.-+ ...|.++ .++|+++.++...+.+.+
T Consensus 55 ~~~~vLDiGcG~G~~~~~l----a~~~~~v---~gvD~s~~~i~~a~~~~~ 98 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIEL----AKRGAIV---KAVDISEQMVQMARNRAQ 98 (219)
T ss_pred CCCEEEEEeCCCCHHHHHH----HHCCCEE---EEEECCHHHHHHHHHHHH
Confidence 4678999999999988877 3456554 599999999988877654
No 100
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=83.83 E-value=1.4 Score=48.14 Aligned_cols=43 Identities=23% Similarity=0.254 Sum_probs=36.0
Q ss_pred ccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCC
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHP 387 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p 387 (718)
..++|||.||.|.++.-| ...|.++ .++|+++.+++..+.|.+
T Consensus 145 ~~~VLDlGcGtG~~a~~l----a~~g~~V---~gvD~S~~ml~~A~~~~~ 187 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPL----ALEGAIV---SASDISAAMVAEAERRAK 187 (315)
T ss_pred CCEEEEecCCCCHHHHHH----HHCCCEE---EEEECCHHHHHHHHHHHH
Confidence 468999999999999888 4568776 499999999988887754
No 101
>PRK06202 hypothetical protein; Provisional
Probab=83.71 E-value=1.6 Score=44.99 Aligned_cols=50 Identities=28% Similarity=0.280 Sum_probs=37.4
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
....++|||-||.|.++.-|..-+...|.... +.+||+++.+++..+.+.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~-v~gvD~s~~~l~~a~~~~ 108 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLE-VTAIDPDPRAVAFARANP 108 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcE-EEEEcCCHHHHHHHHhcc
Confidence 44578999999999998887543334565332 369999999998887775
No 102
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=83.21 E-value=1.4 Score=43.81 Aligned_cols=45 Identities=27% Similarity=0.353 Sum_probs=34.1
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
...++||+.||+|.++..+.. ...+.++ .++|+++.+++..+.|.
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~--~~~~~~v---~~vD~s~~~~~~a~~n~ 75 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAAL--QFPSLQV---TAIERNPDALRLIKENR 75 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHH--HCCCCEE---EEEECCHHHHHHHHHHH
Confidence 345899999999999988832 1123444 59999999999888774
No 103
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=83.06 E-value=2.6 Score=37.97 Aligned_cols=42 Identities=21% Similarity=0.308 Sum_probs=31.8
Q ss_pred ccceeccccccchhhHhHhhhhhhc-CCeeEeEEeecccHHHHHHHHhh
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLA-GLNLVTRWAVDINEYACQSLKLN 385 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~a-G~~~~~~~avd~~~~A~~t~~~N 385 (718)
..++|||.||.|.++.=|. +.. +.++ +++|+++.+++..+.|
T Consensus 20 ~~~vldlG~G~G~~~~~l~---~~~~~~~v---~~vD~s~~~~~~a~~~ 62 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAA---RLVPNGRV---YAIERNPEALRLIERN 62 (124)
T ss_pred CCEEEEeCCCCCHHHHHHH---HHCCCceE---EEEcCCHHHHHHHHHH
Confidence 4589999999999987773 222 3333 6999999998887665
No 104
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=82.40 E-value=2 Score=44.91 Aligned_cols=58 Identities=12% Similarity=0.111 Sum_probs=44.9
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCCCceeecCchHH
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHPETEVRNESAED 398 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p~~~v~~~~~~~ 398 (718)
....++||+-||.|.++.-|.. ...+.++ .+||+++..++..+.+.++..++..|+.+
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~--~~~~~~v---~gvD~s~~~i~~a~~~~~~~~~~~~d~~~ 87 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVE--RWPAARI---TGIDSSPAMLAEARSRLPDCQFVEADIAS 87 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHH--HCCCCEE---EEEECCHHHHHHHHHhCCCCeEEECchhc
Confidence 3456899999999999877731 1124444 59999999999999999988888887754
No 105
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=82.20 E-value=2.3 Score=44.54 Aligned_cols=57 Identities=19% Similarity=0.200 Sum_probs=43.7
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCC------CceeecCchHHH
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHP------ETEVRNESAEDF 399 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p------~~~v~~~~~~~~ 399 (718)
..+.++||+-||.|.++.-| ...|.++ .+||+++.+++..+.+.. ...+++.|+.++
T Consensus 43 ~~~~~vLDiGcG~G~~a~~l----a~~g~~v---~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l 105 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKL----AELGHQV---ILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDI 105 (255)
T ss_pred CCCCEEEEeCCCchHHHHHH----HHcCCEE---EEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHH
Confidence 45679999999999999888 4568776 499999999888777642 345666677654
No 106
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=82.05 E-value=2.1 Score=43.77 Aligned_cols=54 Identities=26% Similarity=0.323 Sum_probs=41.9
Q ss_pred cccceeccccccchhhHhHhhhhhh-cCCeeEeEEeecccHHHHHHHHhhCCCceeecCch
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANL-AGLNLVTRWAVDINEYACQSLKLNHPETEVRNESA 396 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~-aG~~~~~~~avd~~~~A~~t~~~N~p~~~v~~~~~ 396 (718)
..-++||+=||.|-++..|. .. .|.++ .|||+++.+++..+.|+|+..+...|+
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~---~~~~~~~v---~giDiS~~~l~~A~~~~~~~~~~~~d~ 97 (204)
T TIGR03587 43 KIASILELGANIGMNLAALK---RLLPFKHI---YGVEINEYAVEKAKAYLPNINIIQGSL 97 (204)
T ss_pred CCCcEEEEecCCCHHHHHHH---HhCCCCeE---EEEECCHHHHHHHHhhCCCCcEEEeec
Confidence 34579999999999998883 22 25554 599999999999999988877665444
No 107
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=81.39 E-value=1.6 Score=46.73 Aligned_cols=42 Identities=29% Similarity=0.419 Sum_probs=33.3
Q ss_pred cceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhh
Q 047980 339 VKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLN 385 (718)
Q Consensus 339 ~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N 385 (718)
.++|||+||.|.++..+.. ...+.++ .|+|+++.|++..+.|
T Consensus 116 ~~vLDlG~GsG~i~l~la~--~~~~~~v---~avDis~~al~~a~~n 157 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAY--EFPNAEV---IAVDISPDALAVAEEN 157 (284)
T ss_pred CEEEEEeccHhHHHHHHHH--HCCCCEE---EEEECCHHHHHHHHHH
Confidence 5899999999998888732 1233444 5999999999998888
No 108
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=81.12 E-value=1.9 Score=45.28 Aligned_cols=45 Identities=27% Similarity=0.313 Sum_probs=35.6
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
....++||+-||.|.++..+ ...|..-+ .|+|+|+.+.+..+.|.
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~----~~~g~~~v--~giDis~~~l~~A~~n~ 162 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAA----AKLGAKKV--LAVDIDPQAVEAARENA 162 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHH----HHcCCCeE--EEEECCHHHHHHHHHHH
Confidence 45678999999999888766 45666533 69999999999888774
No 109
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=81.01 E-value=1.9 Score=46.29 Aligned_cols=44 Identities=27% Similarity=0.350 Sum_probs=35.0
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
...++||+.||.|.++..+ ...|..-+ .|+|+++.|.+.-+.|.
T Consensus 159 ~g~~VLDvGcGsG~lai~a----a~~g~~~V--~avDid~~al~~a~~n~ 202 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAA----LKLGAAKV--VGIDIDPLAVESARKNA 202 (288)
T ss_pred CCCEEEEeCCChhHHHHHH----HHcCCCeE--EEEECCHHHHHHHHHHH
Confidence 4579999999999988776 44565433 69999999998888774
No 110
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=80.24 E-value=2.5 Score=43.58 Aligned_cols=40 Identities=15% Similarity=0.176 Sum_probs=34.0
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHH
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLK 383 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~ 383 (718)
..-++||+.||.|--+.-| ...|++|+ |||+++.|++...
T Consensus 34 ~~~rvLd~GCG~G~da~~L----A~~G~~V~---gvD~S~~Ai~~~~ 73 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWL----AEQGHRVL---GVELSEIAVEQFF 73 (213)
T ss_pred CCCeEEEeCCCchhHHHHH----HhCCCeEE---EEeCCHHHHHHHH
Confidence 3459999999999888777 67899975 9999999999753
No 111
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=79.90 E-value=2.9 Score=45.89 Aligned_cols=56 Identities=25% Similarity=0.338 Sum_probs=41.1
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC---C---CceeecCchHHH
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH---P---ETEVRNESAEDF 399 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~---p---~~~v~~~~~~~~ 399 (718)
...++||+-||.|.++.-| ...|.++ ++||+++..++..+.+. + ...+++.+++++
T Consensus 131 ~g~~ILDIGCG~G~~s~~L----a~~g~~V---~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l 192 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPL----ARMGATV---TGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKL 192 (322)
T ss_pred CCCEEEEeeCCCCHHHHHH----HHcCCEE---EEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHh
Confidence 4468999999999988776 4567765 59999999988877653 1 345566666553
No 112
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=79.32 E-value=3.7 Score=42.78 Aligned_cols=60 Identities=17% Similarity=0.014 Sum_probs=43.6
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCC------CceeecCchHHHH
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHP------ETEVRNESAEDFL 400 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p------~~~v~~~~~~~~l 400 (718)
..-++||+.+|+|..++.|..++...| ++ .++|+|+.+.+..+.|+. ...++..|+.++|
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g-~v---~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L 133 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDG-RI---TAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSAL 133 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCC-EE---EEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH
Confidence 455899999999987777754433334 44 499999999888887752 3567778876654
No 113
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=78.69 E-value=2.8 Score=43.55 Aligned_cols=55 Identities=18% Similarity=0.103 Sum_probs=42.3
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCCCceeecCchHH
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHPETEVRNESAED 398 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p~~~v~~~~~~~ 398 (718)
...++||+=||.|.++.-| ...|..+ .++|+++.+++..+.+++...+.+.|+++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l----~~~~~~v---~~~D~s~~~l~~a~~~~~~~~~~~~d~~~ 96 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYW----RERGSQV---TALDLSPPMLAQARQKDAADHYLAGDIES 96 (251)
T ss_pred CCCeEEEeeCCCCHHHHHH----HHcCCeE---EEEECCHHHHHHHHhhCCCCCEEEcCccc
Confidence 3467999999999887766 4457655 59999999999999888765566666543
No 114
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=78.68 E-value=70 Score=33.96 Aligned_cols=46 Identities=20% Similarity=0.152 Sum_probs=32.9
Q ss_pred ccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCCC
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHPE 388 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p~ 388 (718)
+.+||+|.+|.|+++.-+. +..+..-+ .+||+|+...+..+.++|.
T Consensus 73 p~~VL~iG~G~G~~~~~ll---~~~~~~~v--~~veid~~vi~~a~~~~~~ 118 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVL---KHKSVEKA--TLVDIDEKVIELSKKFLPS 118 (270)
T ss_pred CCEEEEEcCCchHHHHHHH---hCCCcceE--EEEeCCHHHHHHHHHHhHh
Confidence 3489999999998876552 22223333 5999999998888877653
No 115
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=78.62 E-value=3.1 Score=41.66 Aligned_cols=56 Identities=27% Similarity=0.281 Sum_probs=37.3
Q ss_pred ccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhh-----CCCceeecCchHH
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLN-----HPETEVRNESAED 398 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N-----~p~~~v~~~~~~~ 398 (718)
..++||+-||.|.++.-|.. ...+.++ .|||+++.+++..+.| .++..+++.|+++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~--~~~~~~V---~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~ 103 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAI--ARPELKL---TLLESNHKKVAFLREVKAELGLNNVEIVNGRAED 103 (181)
T ss_pred CCeEEEecCCCCccHHHHHH--HCCCCeE---EEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhh
Confidence 56899999999988877621 1123343 5999999877655544 2345666666644
No 116
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=77.83 E-value=6 Score=43.96 Aligned_cols=50 Identities=26% Similarity=0.234 Sum_probs=39.0
Q ss_pred CccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCC
Q 047980 335 QKMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHP 387 (718)
Q Consensus 335 ~~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p 387 (718)
.+...+|||++|+.||=++=+.+-+..-|..| +|+|+++.-...++.|--
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV---~A~D~~~~Rl~~l~~nl~ 203 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIV---VAVDVSPKRLKRLRENLK 203 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceE---EEEcCCHHHHHHHHHHHH
Confidence 35558999999999999998855444434433 599999999999998843
No 117
>PRK04148 hypothetical protein; Provisional
Probab=77.71 E-value=4 Score=39.20 Aligned_cols=51 Identities=22% Similarity=0.270 Sum_probs=38.6
Q ss_pred cccceeccccccch-hhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCCCceeecCch
Q 047980 337 MDVKLLDLYSGCGA-MSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHPETEVRNESA 396 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg-~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p~~~v~~~~~ 396 (718)
+.++++|+=+|.|. ++.-| ...|++|+ |+|+|+.|++..+.+. +.++..|+
T Consensus 16 ~~~kileIG~GfG~~vA~~L----~~~G~~Vi---aIDi~~~aV~~a~~~~--~~~v~dDl 67 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKL----KESGFDVI---VIDINEKAVEKAKKLG--LNAFVDDL 67 (134)
T ss_pred cCCEEEEEEecCCHHHHHHH----HHCCCEEE---EEECCHHHHHHHHHhC--CeEEECcC
Confidence 34689999888664 55555 67899875 9999999999888874 55555555
No 118
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=77.44 E-value=2.9 Score=45.84 Aligned_cols=46 Identities=24% Similarity=0.303 Sum_probs=36.1
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
....++|||=||+|++..-| |.+..|.+++ |+|+|+.|++.-+.|.
T Consensus 113 ~~~~~vLDIGtGag~I~~lL--a~~~~~~~~~---atDId~~Al~~A~~Nv 158 (321)
T PRK11727 113 GANVRVLDIGVGANCIYPLI--GVHEYGWRFV---GSDIDPQALASAQAII 158 (321)
T ss_pred CCCceEEEecCCccHHHHHH--HhhCCCCEEE---EEeCCHHHHHHHHHHH
Confidence 35678999999999887554 4455577764 9999999999888773
No 119
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=77.05 E-value=3.6 Score=44.59 Aligned_cols=55 Identities=20% Similarity=0.239 Sum_probs=42.0
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC------CCceeecCchHH
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH------PETEVRNESAED 398 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~------p~~~v~~~~~~~ 398 (718)
..-+|||+-||.|.++.-|. ..+-++ +|||+|+.+++.++.|+ ++..+++.|+.+
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll----~~~~~V---~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~ 96 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLL----QLAKKV---IAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALK 96 (294)
T ss_pred CcCEEEEecCchHHHHHHHH----HhCCcE---EEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhh
Confidence 34589999999999998773 334444 59999999999888764 456788887754
No 120
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=76.65 E-value=2.6 Score=45.73 Aligned_cols=44 Identities=27% Similarity=0.382 Sum_probs=35.8
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhh
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLN 385 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N 385 (718)
....+|||+=||.|-++.+- ...|..-+ .|+|+|+.|.++-+.|
T Consensus 160 ~~g~~vLDvG~GSGILaiaA----~klGA~~v--~a~DiDp~Av~~a~~N 203 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAA----AKLGAKKV--VAIDIDPLAVEAAREN 203 (295)
T ss_dssp STTSEEEEES-TTSHHHHHH----HHTTBSEE--EEEESSCHHHHHHHHH
T ss_pred cCCCEEEEeCCcHHHHHHHH----HHcCCCeE--EEecCCHHHHHHHHHH
Confidence 33459999999999888766 66787655 6999999999998888
No 121
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=76.58 E-value=3.5 Score=41.65 Aligned_cols=42 Identities=31% Similarity=0.228 Sum_probs=34.6
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhh
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLN 385 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N 385 (718)
...++||+=||.|.++.-| ...|+++ .|+|+++.+++..+.+
T Consensus 30 ~~~~vLDiGcG~G~~a~~L----a~~g~~V---~gvD~S~~~i~~a~~~ 71 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYL----AANGFDV---TAWDKNPMSIANLERI 71 (197)
T ss_pred CCCcEEEECCCCCHHHHHH----HHCCCEE---EEEeCCHHHHHHHHHH
Confidence 3468999999999999887 4568876 4999999998877765
No 122
>PRK10742 putative methyltransferase; Provisional
Probab=75.73 E-value=3.9 Score=43.29 Aligned_cols=42 Identities=17% Similarity=0.105 Sum_probs=34.7
Q ss_pred ccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
..+|||+|+|-|.++.=+ ...|.+| .+||-++.++..++.|.
T Consensus 89 ~p~VLD~TAGlG~Da~~l----as~G~~V---~~vEr~p~vaalL~dgL 130 (250)
T PRK10742 89 LPDVVDATAGLGRDAFVL----ASVGCRV---RMLERNPVVAALLDDGL 130 (250)
T ss_pred CCEEEECCCCccHHHHHH----HHcCCEE---EEEECCHHHHHHHHHHH
Confidence 359999999999887655 4569884 39999999999999884
No 123
>PLN02823 spermine synthase
Probab=75.20 E-value=76 Score=35.18 Aligned_cols=67 Identities=9% Similarity=-0.022 Sum_probs=40.7
Q ss_pred HHHH--HhhhcCCcEEEEecchhhhhcccchHHHHHHHHHHhCCceEEEEEEeccccCCCCCCcEEEEEEecC
Q 047980 558 VFMD--IVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFRMRVFLWGAQP 628 (718)
Q Consensus 558 ~~~r--iv~~~kPk~~v~ENV~gll~~~~g~~~~~i~~~L~~lGY~v~~~vLnA~dyGvPQ~R~R~fivg~r~ 628 (718)
+|++ +.+.++|.-+++=|+.....+.....+..+++.|.+..-.+......--.||- ...|++|++.
T Consensus 200 eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~~v~~y~~~vPsf~~----~w~f~~aS~~ 268 (336)
T PLN02823 200 SFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFKYVVPYTAHVPSFAD----TWGWVMASDH 268 (336)
T ss_pred HHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCCCEEEEEeecCCCCC----ceEEEEEeCC
Confidence 5554 45668999888767543111112335667778887766556555555555653 2688999864
No 124
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=75.00 E-value=2.9 Score=46.87 Aligned_cols=43 Identities=26% Similarity=0.217 Sum_probs=32.8
Q ss_pred cceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 339 VKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 339 ~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
-++|||.||.|-++.-+.. +.-+.++ .+||+++.|.++-+.|.
T Consensus 230 ~~VLDLGCGtGvi~i~la~--~~P~~~V---~~vD~S~~Av~~A~~N~ 272 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLD--KNPQAKV---VFVDESPMAVASSRLNV 272 (378)
T ss_pred CeEEEEeccccHHHHHHHH--hCCCCEE---EEEECCHHHHHHHHHHH
Confidence 4899999999998877621 1123444 59999999999988874
No 125
>PLN02244 tocopherol O-methyltransferase
Probab=74.77 E-value=4.1 Score=44.85 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=33.5
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhh
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLN 385 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N 385 (718)
....+|||+-||.|+++.-|. +..|.+++ +||+++..++..+.+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La---~~~g~~v~---gvD~s~~~i~~a~~~ 160 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLA---RKYGANVK---GITLSPVQAARANAL 160 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHH---HhcCCEEE---EEECCHHHHHHHHHH
Confidence 345689999999999998773 33366664 999999987766554
No 126
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=74.63 E-value=3.6 Score=42.50 Aligned_cols=39 Identities=18% Similarity=0.195 Sum_probs=33.5
Q ss_pred ccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHH
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLK 383 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~ 383 (718)
.-+|||+.||.|--+.-| ...|++|+ |||+++.|++.+.
T Consensus 38 ~~rvL~~gCG~G~da~~L----A~~G~~V~---avD~s~~Ai~~~~ 76 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWL----AEQGHEVL---GVELSELAVEQFF 76 (218)
T ss_pred CCeEEEeCCCChHhHHHH----HhCCCeEE---EEccCHHHHHHHH
Confidence 459999999999888777 67899975 9999999999753
No 127
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=74.52 E-value=3.8 Score=44.50 Aligned_cols=46 Identities=26% Similarity=0.313 Sum_probs=39.3
Q ss_pred CccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 335 QKMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 335 ~~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
-++..++||+=||.|-+|.+. ...|..-+ .|+|+|+.|.++-+.|.
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa----~kLGA~~v--~g~DiDp~AV~aa~eNa 205 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAA----AKLGAKKV--VGVDIDPQAVEAARENA 205 (300)
T ss_pred hcCCCEEEEecCChhHHHHHH----HHcCCceE--EEecCCHHHHHHHHHHH
Confidence 458889999999999999887 67887755 69999999999988883
No 128
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=74.15 E-value=3.6 Score=45.51 Aligned_cols=43 Identities=26% Similarity=0.278 Sum_probs=32.4
Q ss_pred cceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 339 VKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 339 ~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
-++|||.||.|.++.-+.. ...+.++ .++|+++.|.+.-+.|.
T Consensus 198 g~VLDlGCG~G~ls~~la~--~~p~~~v---~~vDis~~Al~~A~~nl 240 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLAR--HSPKIRL---TLSDVSAAALESSRATL 240 (342)
T ss_pred CeEEEeccCcCHHHHHHHH--hCCCCEE---EEEECCHHHHHHHHHHH
Confidence 3799999999998887731 1133454 59999999998887764
No 129
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=74.04 E-value=55 Score=33.42 Aligned_cols=40 Identities=30% Similarity=0.274 Sum_probs=30.4
Q ss_pred ccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHH
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQS 381 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t 381 (718)
...++++=||.|-.|+-|.. .-|-.+ ...|.|||+.||++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~---~i~~~~-~~latDiNp~A~~~ 83 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLAS---VIGPQA-LYLATDINPEALEA 83 (209)
T ss_pred ceeEEEecCCcchHHHHHHH---hcCCCc-eEEEecCCHHHHHH
Confidence 66789999999999998843 233222 34899999999874
No 130
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=73.74 E-value=4.3 Score=42.94 Aligned_cols=54 Identities=28% Similarity=0.310 Sum_probs=43.8
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC---CCceeecCchH
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH---PETEVRNESAE 397 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~---p~~~v~~~~~~ 397 (718)
....|||+..|.|.++.-| ...|-++ .+||+|+.-++.++..+ ++.+++++|+-
T Consensus 30 ~~~~VlEiGpG~G~lT~~L----~~~~~~v---~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l 86 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTREL----LKRGKRV---IAVEIDPDLAKHLKERFASNPNVEVINGDFL 86 (262)
T ss_dssp TTSEEEEESSTTSCCHHHH----HHHSSEE---EEEESSHHHHHHHHHHCTTCSSEEEEES-TT
T ss_pred CCCEEEEeCCCCccchhhH----hcccCcc---eeecCcHhHHHHHHHHhhhcccceeeecchh
Confidence 6789999999999999999 4555444 59999999999999965 57788887763
No 131
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=73.64 E-value=2.8 Score=43.53 Aligned_cols=40 Identities=20% Similarity=0.240 Sum_probs=27.8
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHH
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLK 383 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~ 383 (718)
...+++|+|||.|+++..+ ...+..+ +++|+|+.....++
T Consensus 20 ~~~~~vepF~G~g~V~~~~----~~~~~~v---i~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNL----KQPGKRV---IINDINPDLINFWK 59 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC-------SSEE---EEEES-HHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHh----cccccce---eeeechHHHHHHHH
Confidence 5678999999999888776 3345554 59999999887776
No 132
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=73.45 E-value=7.8 Score=42.08 Aligned_cols=63 Identities=21% Similarity=0.120 Sum_probs=48.5
Q ss_pred cccceeccccccchhhHhHhhhhhhcC--CeeEeEEeecccHHHHHHHHhhC---CCceeecCchHHHHHHHHH
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAG--LNLVTRWAVDINEYACQSLKLNH---PETEVRNESAEDFLTLLRE 405 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG--~~~~~~~avd~~~~A~~t~~~N~---p~~~v~~~~~~~~l~~lke 405 (718)
...++||+=||.||.|..|. +..+ .+| .|+|.|+.|.+..+.+. ....+++.+..++...+.+
T Consensus 19 pg~~vlD~TlG~GGhS~~il---~~~~~~g~V---igiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~ 86 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAIL---ERLGPKGRL---IAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAE 86 (296)
T ss_pred CCCEEEEeCcCChHHHHHHH---HhCCCCCEE---EEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHc
Confidence 34589999999999999994 3322 444 59999999998877664 3577888888888766655
No 133
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=73.13 E-value=4.5 Score=41.34 Aligned_cols=58 Identities=16% Similarity=0.117 Sum_probs=38.4
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC-----CCceeecCchH
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH-----PETEVRNESAE 397 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~-----p~~~v~~~~~~ 397 (718)
+...++||+.||.|.++.-|.... ..+.++ .++|+++..++..+.|. ++..+++.|+.
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~-~~~~~v---~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~ 106 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAV-GPEGHV---IGLDFSENMLSVGRQKVKDAGLHNVELVHGNAM 106 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHh-CCCCEE---EEEECCHHHHHHHHHHHHhcCCCceEEEEechh
Confidence 345689999999999887663211 123344 59999999888777664 34455555553
No 134
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=72.70 E-value=3.8 Score=46.54 Aligned_cols=43 Identities=26% Similarity=0.305 Sum_probs=33.4
Q ss_pred cceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 339 VKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 339 ~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
.++|||+||.|.++..|.. +..+.++ .|+|+++.|.+..+.|.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~--~~p~a~V---tAVDiS~~ALe~AreNa 295 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVAL--ERPDAFV---RASDISPPALETARKNA 295 (423)
T ss_pred CEEEEEeChhhHHHHHHHH--hCCCCEE---EEEECCHHHHHHHHHHH
Confidence 4899999999999887721 2234444 59999999999998884
No 135
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=72.09 E-value=4.2 Score=41.35 Aligned_cols=45 Identities=24% Similarity=0.353 Sum_probs=35.8
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCC
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHP 387 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p 387 (718)
....+|||+.||.|.++.-| ...|..+ .++|+++.+++..+.+..
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l----~~~~~~v---~~~D~s~~~i~~a~~~~~ 106 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPL----ARRGAKV---VASDISPQMVEEARERAP 106 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHH----HHcCCEE---EEEECCHHHHHHHHHHHH
Confidence 34578999999999988877 4567663 599999999888877654
No 136
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=71.48 E-value=18 Score=38.92 Aligned_cols=47 Identities=26% Similarity=0.240 Sum_probs=36.1
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
.....|||++||.||=++-|..-+...| .+ +|+|++..-+..++.|.
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g-~i---~A~D~~~~Rl~~l~~~~ 130 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKG-EI---VANDISPKRLKRLKENL 130 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTS-EE---EEEESSHHHHHHHHHHH
T ss_pred cccccccccccCCCCceeeeeecccchh-HH---HHhccCHHHHHHHHHHH
Confidence 4455699999999999998854443333 23 69999999999998773
No 137
>PRK04266 fibrillarin; Provisional
Probab=71.37 E-value=7.6 Score=40.41 Aligned_cols=44 Identities=16% Similarity=0.123 Sum_probs=31.2
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhh
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLN 385 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N 385 (718)
...++||+-||+|+++.-|.. ..| . -+++|+|+++.+.+.+..+
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~---~v~-~-g~V~avD~~~~ml~~l~~~ 115 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSD---IVE-E-GVVYAVEFAPRPMRELLEV 115 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHH---hcC-C-CeEEEEECCHHHHHHHHHH
Confidence 446899999999999988842 222 1 1237999999877655444
No 138
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=71.00 E-value=4.7 Score=47.02 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=36.7
Q ss_pred cccceeccccccchhhHhHhhhhhh----cCCeeEeEEeecccHHHHHHHHhhC
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANL----AGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~----aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
...+++|.+||+|++...+-.-+.. .++.. ..+++|+|+.|+...+.|.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~-~i~g~DId~~a~~~a~~~l 83 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVEL-NIYFADIDKTLLKRAKKLL 83 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCccccee-eeeeechhHHHHHHHHHHH
Confidence 5679999999999999888543321 12333 3489999999999888774
No 139
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=70.63 E-value=3.3 Score=41.33 Aligned_cols=49 Identities=18% Similarity=0.178 Sum_probs=30.0
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCe------eEeEEeecccHHHHHHHHhhC
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLN------LVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~------~~~~~avd~~~~A~~t~~~N~ 386 (718)
+..-.+||-|||.|.+-.=-. +...++- ....+++|+|+.+++.-+.|.
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa--~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~ 81 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAA--LMGANIPPLNDINELKIIGSDIDPKAVRGARENL 81 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHH--HHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHH
T ss_pred CCCCEEeecCCCCCHHHHHHH--HHhhCcccccccccccEEecCCCHHHHHHHHHHH
Confidence 345689999999998763221 1112222 011379999999999988884
No 140
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=70.43 E-value=11 Score=37.94 Aligned_cols=58 Identities=12% Similarity=0.107 Sum_probs=41.1
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhh-----CCCceeecCchHHH
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLN-----HPETEVRNESAEDF 399 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N-----~p~~~v~~~~~~~~ 399 (718)
....+|||-||.|.++..|.. ...+.++ .+||+++..++..+.| ..+..+++.|+.++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~--~~p~~~v---~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~ 78 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAK--QNPDKNF---LGIEIHTPIVLAANNKANKLGLKNLHVLCGDANEL 78 (194)
T ss_pred CCceEEEeCCCccHHHHHHHH--hCCCCCE---EEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHH
Confidence 445899999999999988832 2224444 5999999876554433 34677888888765
No 141
>PRK00811 spermidine synthase; Provisional
Probab=70.19 E-value=8.4 Score=41.36 Aligned_cols=58 Identities=16% Similarity=0.193 Sum_probs=42.6
Q ss_pred ccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC----------CCceeecCchHHHH
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH----------PETEVRNESAEDFL 400 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~----------p~~~v~~~~~~~~l 400 (718)
+-+||+|-+|.|++..-+. +..++.-+ .+||+|+...+..+.++ |...++.+|+..|+
T Consensus 77 p~~VL~iG~G~G~~~~~~l---~~~~~~~V--~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l 144 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVL---KHPSVEKI--TLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFV 144 (283)
T ss_pred CCEEEEEecCchHHHHHHH---cCCCCCEE--EEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHH
Confidence 4589999999998877662 33455434 49999999888777655 45677888887764
No 142
>PRK11524 putative methyltransferase; Provisional
Probab=69.94 E-value=5 Score=43.02 Aligned_cols=44 Identities=20% Similarity=0.206 Sum_probs=35.0
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
...=.|||-|+|.| +|++ +|++.|=+.+ ++|+++..|+.-+...
T Consensus 207 ~~GD~VLDPF~GSG--TT~~--AA~~lgR~~I---G~Ei~~~Y~~~a~~Rl 250 (284)
T PRK11524 207 NPGDIVLDPFAGSF--TTGA--VAKASGRKFI---GIEINSEYIKMGLRRL 250 (284)
T ss_pred CCCCEEEECCCCCc--HHHH--HHHHcCCCEE---EEeCCHHHHHHHHHHH
Confidence 44557999999998 5555 4578898876 9999999999877774
No 143
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=69.77 E-value=6.6 Score=41.31 Aligned_cols=58 Identities=24% Similarity=0.229 Sum_probs=44.3
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCCC-----ceeecCchHHH
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHPE-----TEVRNESAEDF 399 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p~-----~~v~~~~~~~~ 399 (718)
...++||+.||.|=++.-+. +..| ... +.++|+++.=++.-+..+.+ ...+..|++.+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~---k~~g-~g~-v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L 113 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLA---KSVG-TGE-VVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENL 113 (238)
T ss_pred CCCEEEEecCCccHHHHHHH---HhcC-Cce-EEEEECCHHHHHHHHHHhhccCccceEEEEechhhC
Confidence 67899999999999999984 5555 322 36999999988888877765 44566677653
No 144
>KOG2748 consensus Uncharacterized conserved protein, contains chromo domain [Chromatin structure and dynamics]
Probab=69.76 E-value=4.7 Score=44.07 Aligned_cols=42 Identities=33% Similarity=0.699 Sum_probs=36.2
Q ss_pred hHHHHHHHHhHhcCCchhhhcccceeeEeeccCCCCCCCCcccccccc
Q 047980 452 EIFEVEKILKICYGDPKEIKKRGLYLKVRWRNYGPSEDTWEPIEGLSN 499 (718)
Q Consensus 452 ~~~~v~~l~~i~~g~p~~~~~~~l~~~~~w~~~~~~~d~w~~~~~~~~ 499 (718)
..|.+|.|+.- .+.|..+.+-|.|+|+...++||+|-.|+-+
T Consensus 9 ~VfAaEsIlkk------RirKGrvEYlVKWkGWs~kyNTWEPEENILD 50 (369)
T KOG2748|consen 9 RVFAAESILKK------RIRKGRVEYLVKWKGWSQKYNTWEPEENILD 50 (369)
T ss_pred hHHHHHHHHHH------HhhccceEEEEEecccccccCccCccccccC
Confidence 45889999864 6788899999999999999999999987543
No 145
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=69.72 E-value=6.7 Score=40.01 Aligned_cols=47 Identities=15% Similarity=0.168 Sum_probs=33.6
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
+...++||+.||.|.++.=|. +..+-+. .+++||+++...+..+.|.
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la---~~~~~~g-~V~~vD~~~~~~~~A~~~~ 122 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLA---EIVGRDG-LVVSIERIPELAEKAERRL 122 (215)
T ss_pred CCcCEEEEECCCccHHHHHHH---HHhCCCC-EEEEEeCCHHHHHHHHHHH
Confidence 455689999999999997663 2233211 1269999999888777664
No 146
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=69.39 E-value=5.6 Score=39.84 Aligned_cols=41 Identities=27% Similarity=0.486 Sum_probs=28.7
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHH
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLK 383 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~ 383 (718)
...-.|||.|+|.| +|++ ++.+.|-+.+ ++|+++..++..+
T Consensus 190 ~~gdiVlDpF~GSG--TT~~--aa~~l~R~~i---g~E~~~~y~~~a~ 230 (231)
T PF01555_consen 190 NPGDIVLDPFAGSG--TTAV--AAEELGRRYI---GIEIDEEYCEIAK 230 (231)
T ss_dssp -TT-EEEETT-TTT--HHHH--HHHHTT-EEE---EEESSHHHHHHHH
T ss_pred ccceeeehhhhccC--hHHH--HHHHcCCeEE---EEeCCHHHHHHhc
Confidence 34567999999998 4444 4478888875 9999999988653
No 147
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=69.16 E-value=6.6 Score=43.71 Aligned_cols=58 Identities=28% Similarity=0.259 Sum_probs=44.1
Q ss_pred ccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC-----CCceeecCchHHHH
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH-----PETEVRNESAEDFL 400 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~-----p~~~v~~~~~~~~l 400 (718)
..+++|-|||.|-=..=+ +...|... .|++|+|+.|++..+.|. -+..++|+|++.+|
T Consensus 53 ~~~v~DalsatGiRgIRy---a~E~~~~~--v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm 115 (380)
T COG1867 53 PKRVLDALSATGIRGIRY---AVETGVVK--VVLNDISPKAVELIKENVRLNSGEDAEVINKDANALL 115 (380)
T ss_pred CeEEeecccccchhHhhh---hhhcCccE--EEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHH
Confidence 889999999999544333 34556542 379999999999998884 25678888998875
No 148
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=69.12 E-value=6.6 Score=40.75 Aligned_cols=55 Identities=25% Similarity=0.170 Sum_probs=39.7
Q ss_pred CccccCCCCccccceeccccccchhh--HhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 327 NECEVGEPQKMDVKLLDLYSGCGAMS--TGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 327 ~~~~~~~~~~~~~~~lDLFsG~Gg~s--~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
..|...-.+..++++-|-|||.|.|- +||+++- .+.-+.|.|||+.|.+.-+.|-
T Consensus 41 qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~-----~l~~v~aSDId~~aL~lA~kNL 97 (246)
T PF11599_consen 41 QRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRR-----RLRRVYASDIDEDALELARKNL 97 (246)
T ss_dssp HHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGG-----GEEEEEEEES-HHHHHHHHHHH
T ss_pred HHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhH-----HHHhHhcccCCHHHHHHHHHhh
Confidence 45766666789999999999999984 5775443 3334479999999999999995
No 149
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=68.74 E-value=5.7 Score=42.52 Aligned_cols=40 Identities=40% Similarity=0.405 Sum_probs=33.4
Q ss_pred cceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhh
Q 047980 339 VKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLN 385 (718)
Q Consensus 339 ~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N 385 (718)
-++|||=||.|..+.-| ...|+++ .|+|+++.|++..+.|
T Consensus 122 ~~vLDlGcG~G~~~~~l----a~~g~~V---~avD~s~~ai~~~~~~ 161 (287)
T PRK12335 122 GKALDLGCGQGRNSLYL----ALLGFDV---TAVDINQQSLENLQEI 161 (287)
T ss_pred CCEEEeCCCCCHHHHHH----HHCCCEE---EEEECCHHHHHHHHHH
Confidence 48999999999988777 4568876 4999999999887765
No 150
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=68.06 E-value=4.2 Score=41.64 Aligned_cols=52 Identities=19% Similarity=0.063 Sum_probs=36.9
Q ss_pred ccccceeccccccchhhHhHhhhhhhcC--CeeEeEEeecccHHHHHHHHhhCCCceeecCchHHH
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAG--LNLVTRWAVDINEYACQSLKLNHPETEVRNESAEDF 399 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG--~~~~~~~avd~~~~A~~t~~~N~p~~~v~~~~~~~~ 399 (718)
++..++|||-||.|+++.-+. +..| ..+ .|||+++ ..+.|+..+++.|+.+.
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~---~~~~~~~~V---~aVDi~~------~~~~~~v~~i~~D~~~~ 103 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAV---TQIGDKGRV---IACDILP------MDPIVGVDFLQGDFRDE 103 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHH---HHcCCCceE---EEEeccc------ccCCCCcEEEecCCCCh
Confidence 344589999999999987663 3333 233 5999998 23567888888887653
No 151
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=67.74 E-value=11 Score=38.49 Aligned_cols=44 Identities=20% Similarity=0.336 Sum_probs=33.8
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
....++|||.||.|.++.-+ ...|.++ .++|+++.+.+..+.|.
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l----~~~~~~v---~~iD~s~~~~~~a~~~~ 90 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESM----ARLGADV---TGIDASEENIEVARLHA 90 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHH----HHcCCeE---EEEcCCHHHHHHHHHHH
Confidence 45678999999999888766 3457664 59999999887776653
No 152
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=67.17 E-value=8.9 Score=38.41 Aligned_cols=56 Identities=20% Similarity=0.182 Sum_probs=39.1
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCC---CceeecCch
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHP---ETEVRNESA 396 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p---~~~v~~~~~ 396 (718)
...++||+-||.|.++.-+. ..+.......++|+++.+++..+.|.+ ...++..|+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~----~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~ 97 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELA----KSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADA 97 (223)
T ss_pred CCCeEEEeCCCCChhHHHHH----HhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecch
Confidence 56799999999999988773 333321123699999999988888764 344444444
No 153
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=66.11 E-value=7.3 Score=39.56 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=32.6
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
...++||+.||.|.++.-|...+...| ++ +++|+++.+.+..+.|.
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g-~V---~~iD~~~~~~~~a~~~l 117 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRG-KV---YTVEIVKELAIYAAQNI 117 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCC-EE---EEEeCCHHHHHHHHHHH
Confidence 446899999999999876643221123 33 69999999887766664
No 154
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=66.11 E-value=9.9 Score=39.71 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=33.7
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCCC
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHPE 388 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p~ 388 (718)
....++||+-||.|+++.-| .+.|...+ .|||+++.-...-..++|.
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l----~~~ga~~v--~avD~~~~~l~~~l~~~~~ 120 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCA----LQKGAKEV--YGVDVGYNQLAEKLRQDER 120 (228)
T ss_pred CCCCEEEEcccCCCHHHHHH----HHcCCCEE--EEEeCCHHHHHHHHhcCCC
Confidence 35568999999999999877 55676655 6999999655442333344
No 155
>KOG2133 consensus Transcriptional corepressor Atrophin-1/DRPLA [General function prediction only]
Probab=65.20 E-value=4.1 Score=49.68 Aligned_cols=122 Identities=19% Similarity=0.104 Sum_probs=86.0
Q ss_pred EECCEEEEecCCeEEEecCCCCCCeEEEEeEEeecCC-CceEEEEEEEEecccCc-cc---c-------------ccccC
Q 047980 182 EVDGHITYDLFDDAHVKAESGEEDYICKIVEMFEAVD-GTPYFTAQWYYRARDTV-IE---S-------------NAHLI 243 (718)
Q Consensus 182 ~v~G~~~y~vGD~VyV~~~~~~p~yIgrI~~iwe~~~-g~~~v~v~WFyRpeET~-~~---~-------------~~~~~ 243 (718)
..++. .|.++|.|+++....+++.|+.|-.+-.+++ ...+++.-.++|++++. ++ . .....
T Consensus 140 s~~e~-~y~~~~~l~~~v~~~~p~lia~~~~~~~~Kr~~~~~~k~s~~~r~~d~Pet~y~~~m~pe~Ar~e~~P~~~pq~ 218 (1229)
T KOG2133|consen 140 SHDET-LYDLRDSLFVEVSQPEPYLIAAICGFKYTKRDDRQVVKLSFYFRADDIPETGYLNLMKPERARLEINPHLCPQP 218 (1229)
T ss_pred cccch-hhhhhhhhhhhhccCCccccccccCccccccccccccccccccccccCcccccccccCchhhhhccCCccCCCc
Confidence 45666 8999999999999999999999988887775 56778888999999987 22 0 11123
Q ss_pred CCCceEeeCCc-cccccccccceeEEEeeCCccchh--hhhccCCCCcEEEeeeeeCCCCeeeC
Q 047980 244 DQRRVFFSEIQ-NDNPLECLVKKLNIARVPLNIDLE--AKKLAIPHCDYYCDMMYLLPYSTFFS 304 (718)
Q Consensus 244 d~rELF~S~~~-d~~~l~~I~gKC~V~~~~~~~~~~--~~~~~~~~~dfyc~~~Yd~~~~~F~~ 304 (718)
..++||.|... -+-+..|..|||.+++........ ......+...||+...|.+++.....
T Consensus 219 ~sq~l~~s~l~~i~qppscp~gk~~~~~skd~~h~~~~n~p~~ld~~i~fk~agglpps~k~a~ 282 (1229)
T KOG2133|consen 219 LSQELFNSELQGITQPPSCPRGKGIAEYSKDVRHGGNTNAPFSLDNDIFFKCAGGLPPSTKPAS 282 (1229)
T ss_pred chhhhhcccccCCCCCCcCCCCCceEEeecccccCCccCCCCcccceeeeecccCCCCCCCCCC
Confidence 56889999988 788999999999998433111110 00111222236666889888776655
No 156
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=64.98 E-value=8.8 Score=40.11 Aligned_cols=58 Identities=12% Similarity=0.096 Sum_probs=39.6
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCC------CceeecCchH
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHP------ETEVRNESAE 397 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p------~~~v~~~~~~ 397 (718)
...++|||=||.|.++..|...+...+.++ .+||+++.+++..+.|.. ...+...|+.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v---~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~ 119 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKI---IAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIR 119 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeE---EEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChh
Confidence 346799999999998877732222245565 499999999888777753 3445555543
No 157
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=62.78 E-value=8 Score=41.61 Aligned_cols=47 Identities=21% Similarity=0.256 Sum_probs=31.4
Q ss_pred ccccceeccccccchhhHhHhhhh-----hhcCCeeEeEEeecccHHHHHHHHhh
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGA-----NLAGLNLVTRWAVDINEYACQSLKLN 385 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~-----~~aG~~~~~~~avd~~~~A~~t~~~N 385 (718)
...-+|+|.+||.||+-..+..-+ ..... .++++|+|+.++..-+.|
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~---~i~G~ei~~~~~~la~~n 96 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEI---NIYGIEIDPEAVALAKLN 96 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCE---EEEEEES-HHHHHHHHHH
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccc---eeEeecCcHHHHHHHHhh
Confidence 445579999999999987764321 11233 347999999999887766
No 158
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=61.88 E-value=13 Score=37.65 Aligned_cols=43 Identities=28% Similarity=0.394 Sum_probs=33.2
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
...++|||-||.|.++.-+ ...|.++ .++|+++.+++..+.|.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l----~~~~~~v---~~iD~s~~~~~~a~~~~ 87 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPL----ARLGANV---TGIDASEENIEVAKLHA 87 (224)
T ss_pred CCCeEEEECCCCCHHHHHH----HhcCCeE---EEEeCCHHHHHHHHHHH
Confidence 4679999999999888766 4456664 59999998877766653
No 159
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=59.98 E-value=11 Score=39.84 Aligned_cols=49 Identities=27% Similarity=0.356 Sum_probs=40.4
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCCCcee
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHPETEV 391 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p~~~v 391 (718)
-..+++||.=||.|-+|.-+ .+.|.+|. |+|+.+.++++-+..-.+.-+
T Consensus 58 l~g~~vLDvGCGgG~Lse~m----Ar~Ga~Vt---giD~se~~I~~Ak~ha~e~gv 106 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPL----ARLGASVT---GIDASEKPIEVAKLHALESGV 106 (243)
T ss_pred CCCCeEEEecCCccHhhHHH----HHCCCeeE---EecCChHHHHHHHHhhhhccc
Confidence 57889999999999888877 78998764 999999999998877655443
No 160
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=59.53 E-value=11 Score=35.37 Aligned_cols=39 Identities=26% Similarity=0.386 Sum_probs=33.9
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHH
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQS 381 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t 381 (718)
....+|||+=||.|.++.-| +..|+++ .++|+++.+.+.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l----~~~~~~~---~g~D~~~~~~~~ 59 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRAL----AKRGFEV---TGVDISPQMIEK 59 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHH----HHTTSEE---EEEESSHHHHHH
T ss_pred CCCCEEEEEcCCCCHHHHHH----HHhCCEE---EEEECCHHHHhh
Confidence 56779999999999998888 6789965 499999999887
No 161
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=58.54 E-value=18 Score=36.57 Aligned_cols=56 Identities=20% Similarity=0.142 Sum_probs=38.8
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCC-CceeecCchH
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHP-ETEVRNESAE 397 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p-~~~v~~~~~~ 397 (718)
...++|||-||.|.++.-| ...|... ...++|+++...+..+.+.+ ...+...|++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l----~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~ 90 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRAL----LKRFPQA-EFIALDISAGMLAQAKTKLSENVQFICGDAE 90 (240)
T ss_pred CCCeEEEECCCccHHHHHH----HHhCCCC-cEEEEeChHHHHHHHHHhcCCCCeEEecchh
Confidence 4578999999999988777 3444333 23699999999887776654 3344455554
No 162
>PRK08317 hypothetical protein; Provisional
Probab=58.09 E-value=14 Score=37.16 Aligned_cols=57 Identities=19% Similarity=0.121 Sum_probs=37.3
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhh----CCCceeecCch
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLN----HPETEVRNESA 396 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N----~p~~~v~~~~~ 396 (718)
....+|||+-||.|.++..+..-. ..+.++ .++|+++...+..+.+ .+...+.+.|+
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~-~~~~~v---~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~ 78 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRV-GPEGRV---VGIDRSEAMLALAKERAAGLGPNVEFVRGDA 78 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhc-CCCcEE---EEEeCCHHHHHHHHHHhhCCCCceEEEeccc
Confidence 345689999999999888773211 012343 5999999887766665 33445555444
No 163
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=57.77 E-value=13 Score=37.84 Aligned_cols=40 Identities=35% Similarity=0.373 Sum_probs=32.1
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHH
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLK 383 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~ 383 (718)
++-++|||=||-|.-++=| ...|++|. |+|+++.|.+.++
T Consensus 30 ~~g~~LDlgcG~GRNalyL----A~~G~~Vt---AvD~s~~al~~l~ 69 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYL----ASQGFDVT---AVDISPVALEKLQ 69 (192)
T ss_dssp -SSEEEEES-TTSHHHHHH----HHTT-EEE---EEESSHHHHHHHH
T ss_pred CCCcEEEcCCCCcHHHHHH----HHCCCeEE---EEECCHHHHHHHH
Confidence 4669999999999999877 78999975 9999999987654
No 164
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=57.55 E-value=13 Score=39.30 Aligned_cols=45 Identities=20% Similarity=0.232 Sum_probs=31.4
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhh
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLN 385 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N 385 (718)
...++||+-||.|.++.-|. +..|... .+.|||+++...+..+.+
T Consensus 73 ~~~~VLDlGcGtG~~~~~la---~~~~~~~-~V~gvD~S~~ml~~A~~r 117 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLS---EKVGSDG-KVMGLDFSSEQLAVAASR 117 (261)
T ss_pred CCCEEEEECCcCCHHHHHHH---HHhCCCC-EEEEEECCHHHHHHHHHH
Confidence 35689999999999876552 3334221 125999999988877654
No 165
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=57.30 E-value=15 Score=29.65 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=26.2
Q ss_pred EecCCeEEEecCCCCCCeEEEEeEEeecCCCceEEEEEEEEe
Q 047980 189 YDLFDDAHVKAESGEEDYICKIVEMFEAVDGTPYFTAQWYYR 230 (718)
Q Consensus 189 y~vGD~VyV~~~~~~p~yIgrI~~iwe~~~g~~~v~v~WFyR 230 (718)
|++||.|.++++.+.= -|..|..- ......++.++||--
T Consensus 1 f~~GDvV~LKSGGp~M-TV~~v~~~--~~~~~~~v~C~WFd~ 39 (53)
T PF09926_consen 1 FKIGDVVQLKSGGPRM-TVTEVGPN--AGASGGWVECQWFDG 39 (53)
T ss_pred CCCCCEEEEccCCCCe-EEEEcccc--ccCCCCeEEEEeCCC
Confidence 5799999999986543 44444332 123446899999964
No 166
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=57.12 E-value=5.6 Score=45.95 Aligned_cols=40 Identities=30% Similarity=0.459 Sum_probs=32.9
Q ss_pred cceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhh
Q 047980 339 VKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLN 385 (718)
Q Consensus 339 ~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N 385 (718)
-.++|+|||.|-.++.++ .|+.-| .+||+++.|..--+.|
T Consensus 385 k~llDv~CGTG~iglala-----~~~~~V--iGvEi~~~aV~dA~~n 424 (534)
T KOG2187|consen 385 KTLLDVCCGTGTIGLALA-----RGVKRV--IGVEISPDAVEDAEKN 424 (534)
T ss_pred cEEEEEeecCCceehhhh-----ccccce--eeeecChhhcchhhhc
Confidence 689999999998888773 556555 6999999998877777
No 167
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=56.77 E-value=15 Score=36.89 Aligned_cols=42 Identities=36% Similarity=0.267 Sum_probs=34.2
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhh
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLN 385 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N 385 (718)
...++||+=||.|.++.-| ...|.+| .|+|+++.+++..+.+
T Consensus 30 ~~~~vLDiGcG~G~~a~~l----a~~g~~V---~~iD~s~~~l~~a~~~ 71 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYL----SLAGYDV---RAWDHNPASIASVLDM 71 (195)
T ss_pred CCCcEEEeCCCCCHHHHHH----HHCCCeE---EEEECCHHHHHHHHHH
Confidence 3569999999999988777 4568765 4999999999887655
No 168
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=56.37 E-value=7.6 Score=38.65 Aligned_cols=51 Identities=18% Similarity=0.075 Sum_probs=33.0
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCCCceeecCch
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHPETEVRNESA 396 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p~~~v~~~~~ 396 (718)
....++||+-||.|+++.-+..-+. ...++ +++|+++.. ..++..+.+.|+
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~-~~~~v---~~vDis~~~------~~~~i~~~~~d~ 81 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVG-GKGRV---IAVDLQPMK------PIENVDFIRGDF 81 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhC-CCceE---EEEeccccc------cCCCceEEEeeC
Confidence 3456899999999999887732110 11233 699999854 345666655554
No 169
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=55.59 E-value=17 Score=36.79 Aligned_cols=44 Identities=23% Similarity=0.172 Sum_probs=33.9
Q ss_pred cccceeccccccchhhHhHhhhhhhcC---CeeEeEEeecccHHHHHHHHhhCC
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAG---LNLVTRWAVDINEYACQSLKLNHP 387 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG---~~~~~~~avd~~~~A~~t~~~N~p 387 (718)
...++||+-||.|.++.-+. ..+ .++ .++|+++.+.+..+.|..
T Consensus 51 ~~~~vldiG~G~G~~~~~l~----~~~~~~~~v---~~~D~s~~~~~~a~~~~~ 97 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALA----KAVGKTGEV---VGLDFSEGMLAVGREKLR 97 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHH----HHcCCCCeE---EEEeCCHHHHHHHHHhhc
Confidence 35799999999999988773 233 343 699999999888887753
No 170
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=55.57 E-value=20 Score=37.91 Aligned_cols=46 Identities=28% Similarity=0.315 Sum_probs=35.5
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCC
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHP 387 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p 387 (718)
....+|||+=||.|+.+.-|. ...|.++ .++|+++.+++..+.+.+
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la---~~~~~~v---~giD~s~~~~~~a~~~~~ 96 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYIN---EKYGAHV---HGVDICEKMVNIAKLRNS 96 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHH---hhcCCEE---EEEECCHHHHHHHHHHcC
Confidence 455789999999999887663 3346665 499999999888887765
No 171
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=54.87 E-value=20 Score=37.99 Aligned_cols=58 Identities=21% Similarity=0.233 Sum_probs=42.5
Q ss_pred cccceeccccccchhhHhHhhhhhhc-CCeeEeEEeecccHHHHHHHHhhCCCceeecCchH
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLA-GLNLVTRWAVDINEYACQSLKLNHPETEVRNESAE 397 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~a-G~~~~~~~avd~~~~A~~t~~~N~p~~~v~~~~~~ 397 (718)
...++||+=||.|.++..|..-+... |..+ .++|+++.+.+..+.++|+..+...|+.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v---~giD~s~~~l~~A~~~~~~~~~~~~d~~ 143 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQL---FGLDISKVAIKYAAKRYPQVTFCVASSH 143 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeE---EEECCCHHHHHHHHHhCCCCeEEEeecc
Confidence 44679999999999988884322112 2233 5999999999998888888777665553
No 172
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=54.66 E-value=16 Score=36.80 Aligned_cols=43 Identities=23% Similarity=0.176 Sum_probs=32.8
Q ss_pred ccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhh
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLN 385 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N 385 (718)
..++||+=||+|.++.-+.. ...+.++ .+||+++.+++..+.|
T Consensus 46 g~~VLDiGcGtG~~al~la~--~~~~~~V---~giD~s~~~l~~A~~~ 88 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAI--ARPELKV---TLVDSLGKKIAFLREV 88 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHH--HCCCCeE---EEEeCcHHHHHHHHHH
Confidence 67899999999998887732 2234554 4999999888777766
No 173
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=54.23 E-value=11 Score=41.89 Aligned_cols=44 Identities=27% Similarity=0.428 Sum_probs=35.1
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
++.-.+||=|||.||+-.=. ..-|.+++ ++|++.....--+.|.
T Consensus 196 ~~G~~vlDPFcGTGgiLiEa----gl~G~~vi---G~Did~~mv~gak~Nl 239 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEA----GLMGARVI---GSDIDERMVRGAKINL 239 (347)
T ss_pred ccCCEeecCcCCccHHHHhh----hhcCceEe---ecchHHHHHhhhhhhh
Confidence 44458999999999876433 45788876 8999999998888885
No 174
>PLN02672 methionine S-methyltransferase
Probab=53.72 E-value=14 Score=46.96 Aligned_cols=43 Identities=21% Similarity=0.250 Sum_probs=33.3
Q ss_pred cceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 339 VKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 339 ~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
.++|||.||.|.++..+.. +....++ .|+|+++.|++..+.|-
T Consensus 120 ~~VLDlG~GSG~Iai~La~--~~~~~~v---~avDis~~Al~~A~~Na 162 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAE--KWLPSKV---YGLDINPRAVKVAWINL 162 (1082)
T ss_pred CEEEEEecchHHHHHHHHH--HCCCCEE---EEEECCHHHHHHHHHHH
Confidence 4799999999999988832 1112333 59999999999999883
No 175
>PRK06922 hypothetical protein; Provisional
Probab=53.29 E-value=21 Score=42.87 Aligned_cols=45 Identities=20% Similarity=0.292 Sum_probs=34.2
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
...++||+.||.|.++.-|.. ...+.++ .|+|+++.+++..+.+.
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~--~~P~~kV---tGIDIS~~MLe~Ararl 462 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEE--ETEDKRI---YGIDISENVIDTLKKKK 462 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHH--hCCCCEE---EEEECCHHHHHHHHHHh
Confidence 356899999999998877732 1245555 59999999988887764
No 176
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=53.23 E-value=14 Score=42.60 Aligned_cols=62 Identities=24% Similarity=0.227 Sum_probs=41.3
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHh----hC--CCceeecCchHHH
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKL----NH--PETEVRNESAEDF 399 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~----N~--p~~~v~~~~~~~~ 399 (718)
+...|+|+=||-|-++.-...+++.+|..+. ++|||.|+.|+.+++. |. ...+|+++|++++
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~-VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v 253 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVK-VYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREV 253 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESE-EEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTS
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeE-EEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCC
Confidence 5688999999999998654333333443333 4899999999988742 32 4577888888765
No 177
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=53.10 E-value=22 Score=35.46 Aligned_cols=52 Identities=15% Similarity=0.202 Sum_probs=35.2
Q ss_pred ccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCCCceeecCchH
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHPETEVRNESAE 397 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p~~~v~~~~~~ 397 (718)
..++||+.||.|.++.-|. ...+..+ +++|+++.+.+..+.+ +..++..|++
T Consensus 14 ~~~iLDiGcG~G~~~~~l~---~~~~~~~---~giD~s~~~i~~a~~~--~~~~~~~d~~ 65 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLR---DEKQVRG---YGIEIDQDGVLACVAR--GVNVIQGDLD 65 (194)
T ss_pred CCEEEEeCCCCCHHHHHHH---hccCCcE---EEEeCCHHHHHHHHHc--CCeEEEEEhh
Confidence 3589999999999876662 2234443 6999999888776554 3445555553
No 178
>PTZ00146 fibrillarin; Provisional
Probab=52.40 E-value=24 Score=38.28 Aligned_cols=40 Identities=20% Similarity=0.200 Sum_probs=28.1
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHH
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYAC 379 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~ 379 (718)
+...+||||.||.|.++.-+..-....| . ++|||+++.+.
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G--~--VyAVD~s~r~~ 170 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEG--V--VYAVEFSHRSG 170 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCC--E--EEEEECcHHHH
Confidence 3446899999999999988853221123 2 37999997654
No 179
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=52.24 E-value=14 Score=40.65 Aligned_cols=43 Identities=21% Similarity=0.239 Sum_probs=29.5
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhh
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLN 385 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N 385 (718)
...+||||+||=||=-.=. ..+++... +++||+..+++--+..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw----~~~~i~~~--vg~Dis~~si~ea~~R 104 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKW----QKAKIKHY--VGIDISEESIEEARER 104 (331)
T ss_dssp TT-EEEEET-TTTTTHHHH----HHTT-SEE--EEEES-HHHHHHHHHH
T ss_pred CCCeEEEecCCCchhHHHH----HhcCCCEE--EEEeCCHHHHHHHHHH
Confidence 7889999999988755445 45777766 7999999887655544
No 180
>PRK13699 putative methylase; Provisional
Probab=51.66 E-value=18 Score=37.72 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=31.6
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhh
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLN 385 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N 385 (718)
..-.|||-|||.| |+++ ++.+.|-+.+ ++|+++..++.....
T Consensus 163 ~g~~vlDpf~Gsg--tt~~--aa~~~~r~~~---g~e~~~~y~~~~~~r 204 (227)
T PRK13699 163 PNAIVLDPFAGSG--STCV--AALQSGRRYI---GIELLEQYHRAGQQR 204 (227)
T ss_pred CCCEEEeCCCCCC--HHHH--HHHHcCCCEE---EEecCHHHHHHHHHH
Confidence 4447999999998 4444 3477898875 999999888765544
No 181
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=50.64 E-value=24 Score=36.92 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=39.9
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCCCceeecCchHH
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHPETEVRNESAED 398 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p~~~v~~~~~~~ 398 (718)
....+||||=||.|.++.-|.. ...|.++ .++|+++...+..+.+ +..++..|+++
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~--~~p~~~v---~gvD~s~~~~~~a~~~--~~~~~~~d~~~ 83 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLAR--RWPGAVI---EALDSSPEMVAAARER--GVDARTGDVRD 83 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHH--HCCCCEE---EEEECCHHHHHHHHhc--CCcEEEcChhh
Confidence 3457899999999998877731 1125554 5999999998877664 45666666654
No 182
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=50.31 E-value=18 Score=36.64 Aligned_cols=45 Identities=16% Similarity=0.094 Sum_probs=33.4
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCC
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHP 387 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p 387 (718)
+...++||+.||.|.++.-|. ..+.++ .+||+++.+.+..+.|+.
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la----~~~~~v---~~vd~~~~~~~~a~~~~~ 121 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLA----HLVRRV---FSVERIKTLQWEAKRRLK 121 (212)
T ss_pred CCCCEEEEECCCccHHHHHHH----HHhCEE---EEEeCCHHHHHHHHHHHH
Confidence 456799999999999887552 222233 599999999887777753
No 183
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=47.34 E-value=28 Score=37.21 Aligned_cols=52 Identities=23% Similarity=0.288 Sum_probs=43.7
Q ss_pred ccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC---CCceeecCch
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH---PETEVRNESA 396 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~---p~~~v~~~~~ 396 (718)
.-+||++=.|.|+++.-| ...|-.+. |||+|+.-+..++... ++.+++++|+
T Consensus 31 ~d~VlEIGpG~GaLT~~L----l~~~~~v~---aiEiD~~l~~~L~~~~~~~~n~~vi~~Da 85 (259)
T COG0030 31 GDNVLEIGPGLGALTEPL----LERAARVT---AIEIDRRLAEVLKERFAPYDNLTVINGDA 85 (259)
T ss_pred CCeEEEECCCCCHHHHHH----HhhcCeEE---EEEeCHHHHHHHHHhcccccceEEEeCch
Confidence 678999999999999999 45566653 9999999999999885 4678888877
No 184
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=47.18 E-value=26 Score=36.59 Aligned_cols=57 Identities=23% Similarity=0.285 Sum_probs=34.4
Q ss_pred ccccceeccccccchhhHhHhhhhhhcC--CeeEeEEeecccHHHHHHHHhhC-----CCceeecCchHH
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAG--LNLVTRWAVDINEYACQSLKLNH-----PETEVRNESAED 398 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG--~~~~~~~avd~~~~A~~t~~~N~-----p~~~v~~~~~~~ 398 (718)
....++|||.||.|-++.-|. +..| .++ .++|+++.=.+.-+... .+..+...|+++
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~---~~~~~~~~v---~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~ 109 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELA---RRVGPNGKV---VGVDISPGMLEVARKKLKREGLQNIEFVQGDAED 109 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHG---GGSS---EE---EEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB
T ss_pred CCCCEEEEeCCChHHHHHHHH---HHCCCccEE---EEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHH
Confidence 455699999999999988773 3344 344 49999997776665442 355566666654
No 185
>PLN02476 O-methyltransferase
Probab=46.80 E-value=39 Score=36.45 Aligned_cols=61 Identities=16% Similarity=0.073 Sum_probs=46.0
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC------CCceeecCchHHHH
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH------PETEVRNESAEDFL 400 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~------p~~~v~~~~~~~~l 400 (718)
.+.-++|++.+|.|..++-|.+++...| .+ .++|+|+.+.+.-+.|+ ....++.+|+.++|
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G-~V---~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L 183 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESG-CL---VACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESL 183 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCC-EE---EEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence 3456899999999999988865544344 34 59999999988888887 24567778886665
No 186
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=45.44 E-value=25 Score=35.89 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=33.5
Q ss_pred ccccceeccccccchhhHhHhhhhhhcC--CeeEeEEeecccHHHHHHHHhhC
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAG--LNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG--~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
+...++||+.||.|.++.=|. +..| .++ .++|+++...+..+.|.
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la---~~~~~~~~V---~~vE~~~~~~~~a~~~l 121 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVA---EIVGKSGKV---VTIERIPELAEKAKKTL 121 (212)
T ss_pred CCcCEEEEECCcccHHHHHHH---HhcCCCCEE---EEEeCCHHHHHHHHHHH
Confidence 445689999999999997663 2333 233 59999999888777663
No 187
>PRK04457 spermidine synthase; Provisional
Probab=45.35 E-value=45 Score=35.41 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=41.4
Q ss_pred ccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC------CCceeecCchHHHH
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH------PETEVRNESAEDFL 400 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~------p~~~v~~~~~~~~l 400 (718)
.-++|||=+|.|.++.-+.. ...+.++ .+||+|+...+..+.++ +...++..|+.+|+
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~--~~p~~~v---~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l 130 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYT--YLPDTRQ---TAVEINPQVIAVARNHFELPENGERFEVIEADGAEYI 130 (262)
T ss_pred CCEEEEECCCHhHHHHHHHH--hCCCCeE---EEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHH
Confidence 44799998888877766632 1224444 59999999999888775 34577888887764
No 188
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=45.24 E-value=47 Score=33.49 Aligned_cols=67 Identities=21% Similarity=0.228 Sum_probs=57.2
Q ss_pred CccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCCCceeecCchHHHHHHHHH
Q 047980 335 QKMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHPETEVRNESAEDFLTLLRE 405 (718)
Q Consensus 335 ~~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p~~~v~~~~~~~~l~~lke 405 (718)
....+.||+|=-|.|-++..+ -..|++-....++|++++=...+..-+|+..++|+|+.+.-..|+|
T Consensus 46 pesglpVlElGPGTGV~TkaI----L~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e 112 (194)
T COG3963 46 PESGLPVLELGPGTGVITKAI----LSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGE 112 (194)
T ss_pred cccCCeeEEEcCCccHhHHHH----HhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhh
Confidence 356788999999999999888 5678877777899999999999999999999999999886545555
No 189
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=44.75 E-value=29 Score=32.42 Aligned_cols=42 Identities=19% Similarity=0.063 Sum_probs=33.0
Q ss_pred ceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 340 KLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 340 ~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
++||+-||.|-.+..| ...|... ..+++|.++.+.+.++.|+
T Consensus 1 ~vlDiGa~~G~~~~~~----~~~~~~~-~v~~~E~~~~~~~~l~~~~ 42 (143)
T TIGR01444 1 VVIDVGANIGDTSLYF----ARKGAEG-RVIAFEPLPDAYEILEENV 42 (143)
T ss_pred CEEEccCCccHHHHHH----HHhCCCC-EEEEEecCHHHHHHHHHHH
Confidence 5899999999998887 3445432 2379999999999888874
No 190
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=44.58 E-value=50 Score=33.63 Aligned_cols=60 Identities=25% Similarity=0.279 Sum_probs=43.6
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC-----CCceeecCchHHHH
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH-----PETEVRNESAEDFL 400 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~-----p~~~v~~~~~~~~l 400 (718)
...-.++|+=||+|+++.=+ ..+|-... ..|+|-|+.|.+..+.|. ++.+++..++-+.|
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~----a~~~p~~~-v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L 97 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEW----ALAGPSGR-VIAIERDEEALELIERNAARFGVDNLEVVEGDAPEAL 97 (187)
T ss_pred CCCCEEEEeCCCccHHHHHH----HHhCCCce-EEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhh
Confidence 44458999989998777655 23454333 379999999999999994 67777777776553
No 191
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=44.50 E-value=48 Score=29.80 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=40.3
Q ss_pred cccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCCCceeecCchHHH
Q 047980 344 LYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHPETEVRNESAEDF 399 (718)
Q Consensus 344 LFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p~~~v~~~~~~~~ 399 (718)
+.+|+|-++..+...+...|.+++ .+|.|+..++.++... ..++.+|..+.
T Consensus 2 vI~G~g~~~~~i~~~L~~~~~~vv---vid~d~~~~~~~~~~~--~~~i~gd~~~~ 52 (116)
T PF02254_consen 2 VIIGYGRIGREIAEQLKEGGIDVV---VIDRDPERVEELREEG--VEVIYGDATDP 52 (116)
T ss_dssp EEES-SHHHHHHHHHHHHTTSEEE---EEESSHHHHHHHHHTT--SEEEES-TTSH
T ss_pred EEEcCCHHHHHHHHHHHhCCCEEE---EEECCcHHHHHHHhcc--cccccccchhh
Confidence 468999999999888888776776 8999999999998775 67778888764
No 192
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=44.14 E-value=29 Score=37.97 Aligned_cols=56 Identities=20% Similarity=0.150 Sum_probs=37.1
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHH---h---hCCCceeecCchHH
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLK---L---NHPETEVRNESAED 398 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~---~---N~p~~~v~~~~~~~ 398 (718)
...+|||+=||.|..+..+ ...|...+ .+||.++....-.+ . +.++..+...++++
T Consensus 122 ~g~~VLDIGCG~G~~~~~l----a~~g~~~V--~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~ 183 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRM----LGAGAKLV--VGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQ 183 (322)
T ss_pred CCCEEEEeccCCcHHHHHH----HHcCCCEE--EEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHH
Confidence 3468999999999988877 45676544 59999986543221 1 13355666666654
No 193
>PRK10708 hypothetical protein; Provisional
Probab=44.04 E-value=54 Score=26.90 Aligned_cols=43 Identities=21% Similarity=0.427 Sum_probs=32.6
Q ss_pred ecCCeEEEecCCCCCCeEEEEeEEeecCCCceEE-------EEEEEEeccc
Q 047980 190 DLFDDAHVKAESGEEDYICKIVEMFEAVDGTPYF-------TAQWYYRARD 233 (718)
Q Consensus 190 ~vGD~VyV~~~~~~p~yIgrI~~iwe~~~g~~~v-------~v~WFyRpeE 233 (718)
+|+|.|.|+.+.+. .-.|.|..+-.=..|.||+ .+-||+--.+
T Consensus 2 kvnD~VtVKTDG~~-rR~G~iLavE~F~EG~MyLvaL~dYP~GiWFFNE~~ 51 (62)
T PRK10708 2 KVNDRVTVKTDGGP-RRPGVVLAVEEFSEGTMYLVSLEDYPLGIWFFNEAG 51 (62)
T ss_pred ccccEEEEecCCCc-cccceEEEEeeccCcEEEEEEcCcCCCceEEEeccC
Confidence 68999999987644 3788888888777888875 4578886443
No 194
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=43.64 E-value=11 Score=38.56 Aligned_cols=45 Identities=31% Similarity=0.408 Sum_probs=37.7
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
-+..+||||.||.|=.+..- ..+|-.-+ ++.|+++++....++|-
T Consensus 78 VrgkrVLd~gagsgLvaIAa----a~aGA~~v--~a~d~~P~~~~ai~lNa 122 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAA----ARAGAAEV--VAADIDPWLEQAIRLNA 122 (218)
T ss_pred cccceeeecccccChHHHHH----HHhhhHHH--HhcCCChHHHHHhhcch
Confidence 56779999999999777654 67887766 79999999999999983
No 195
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=42.76 E-value=37 Score=38.33 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=45.1
Q ss_pred cccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCCCceeecCchHHH
Q 047980 344 LYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHPETEVRNESAEDF 399 (718)
Q Consensus 344 LFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p~~~v~~~~~~~~ 399 (718)
+.+|+|-+...+..-+...|.+++ .+|.|+..++.++..+++..++.+|+.+.
T Consensus 235 iIiG~G~~g~~l~~~L~~~~~~v~---vid~~~~~~~~~~~~~~~~~~i~gd~~~~ 287 (453)
T PRK09496 235 MIVGGGNIGYYLAKLLEKEGYSVK---LIERDPERAEELAEELPNTLVLHGDGTDQ 287 (453)
T ss_pred EEECCCHHHHHHHHHHHhCCCeEE---EEECCHHHHHHHHHHCCCCeEEECCCCCH
Confidence 578999999888887778899875 89999999999999888888888887653
No 196
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=42.61 E-value=20 Score=35.32 Aligned_cols=50 Identities=20% Similarity=0.056 Sum_probs=31.3
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCCCceeecCch
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHPETEVRNESA 396 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p~~~v~~~~~ 396 (718)
...++|||.|+.||++.=+ ...+-..-.++|||+.+. ...++...+..|+
T Consensus 23 ~~~~vlDlG~aPGGws~~~----~~~~~~~~~v~avDl~~~------~~~~~~~~i~~d~ 72 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVL----LQRGGPAGRVVAVDLGPM------DPLQNVSFIQGDI 72 (181)
T ss_dssp TTEEEEEET-TTSHHHHHH----HTSTTTEEEEEEEESSST------GS-TTEEBTTGGG
T ss_pred cccEEEEcCCcccceeeee----eecccccceEEEEecccc------ccccceeeeeccc
Confidence 5689999999999999777 344411112379999987 2334555544433
No 197
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=42.60 E-value=36 Score=38.24 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=35.7
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCCC
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHPE 388 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p~ 388 (718)
...++||+=||.|+++.-+. +..|.++ .++|+++...+..+.+..+
T Consensus 167 ~g~rVLDIGcG~G~~a~~la---~~~g~~V---~giDlS~~~l~~A~~~~~~ 212 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAA---EHYGVSV---VGVTISAEQQKLAQERCAG 212 (383)
T ss_pred CCCEEEEeCCCccHHHHHHH---HHCCCEE---EEEeCCHHHHHHHHHHhcc
Confidence 44689999999999887662 3457765 4999999999888877643
No 198
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=40.30 E-value=43 Score=36.72 Aligned_cols=57 Identities=14% Similarity=0.029 Sum_probs=37.8
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHH------HhhCCCceeecCchHH
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSL------KLNHPETEVRNESAED 398 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~------~~N~p~~~v~~~~~~~ 398 (718)
....+|||+=||.|.+...+ ...|...+ .+||.++.....+ ..+.+...+.+.++++
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~----~~~g~~~v--~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~ 182 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRM----LGHGAKSL--VGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQ 182 (314)
T ss_pred CCCCEEEEeccCCcHHHHHH----HHcCCCEE--EEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHH
Confidence 33468999999999988777 45676544 5999998654322 2234455566656654
No 199
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=39.48 E-value=41 Score=36.32 Aligned_cols=58 Identities=21% Similarity=0.168 Sum_probs=38.9
Q ss_pred ccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHH----HHHhhCCCcee--ecCchHHH
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQ----SLKLNHPETEV--RNESAEDF 399 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~----t~~~N~p~~~v--~~~~~~~~ 399 (718)
..++|||=||.|-++.-|...+. .|.++ .+||+++...+ -++..+|+..+ ++.|..+.
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~-~~~~~---~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~ 127 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALR-QPARY---VPIDISADALKESAAALAADYPQLEVHGICADFTQP 127 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhc-cCCeE---EEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccch
Confidence 45799999999999988843221 15555 59999997654 34445677554 46666543
No 200
>PRK05785 hypothetical protein; Provisional
Probab=39.34 E-value=33 Score=35.46 Aligned_cols=41 Identities=22% Similarity=0.213 Sum_probs=31.5
Q ss_pred ccceeccccccchhhHhHhhhhhhc-CCeeEeEEeecccHHHHHHHHhh
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLA-GLNLVTRWAVDINEYACQSLKLN 385 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~a-G~~~~~~~avd~~~~A~~t~~~N 385 (718)
..++|||-||.|-++.-| ... |.++ .++|+++..++.-+..
T Consensus 52 ~~~VLDlGcGtG~~~~~l----~~~~~~~v---~gvD~S~~Ml~~a~~~ 93 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHF----KKVFKYYV---VALDYAENMLKMNLVA 93 (226)
T ss_pred CCeEEEEcCCCCHHHHHH----HHhcCCEE---EEECCCHHHHHHHHhc
Confidence 568999999999888777 333 5554 5999999998875543
No 201
>PF10781 DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose [].
Probab=38.13 E-value=74 Score=26.14 Aligned_cols=43 Identities=23% Similarity=0.468 Sum_probs=32.3
Q ss_pred ecCCeEEEecCCCCCCeEEEEeEEeecCCCceEE-------EEEEEEeccc
Q 047980 190 DLFDDAHVKAESGEEDYICKIVEMFEAVDGTPYF-------TAQWYYRARD 233 (718)
Q Consensus 190 ~vGD~VyV~~~~~~p~yIgrI~~iwe~~~g~~~v-------~v~WFyRpeE 233 (718)
+|+|.|.|+.+.+. ---|.|..+-+=..|.||+ .+-||+--.+
T Consensus 2 kvnD~VtVKTDG~~-rR~G~ilavE~F~EG~MYLvaL~dYP~GiWFFNE~~ 51 (62)
T PF10781_consen 2 KVNDRVTVKTDGGP-RREGVILAVEPFNEGTMYLVALEDYPAGIWFFNEKD 51 (62)
T ss_pred ccccEEEEecCCcc-cccceEEEEeeccCcEEEEEEcCcCCcceEEEecCC
Confidence 68999999987644 3788888887777888875 3578886443
No 202
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=38.02 E-value=41 Score=36.37 Aligned_cols=44 Identities=25% Similarity=0.307 Sum_probs=35.4
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhh
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLN 385 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N 385 (718)
+..++|||+=||.|||+.=+ |+.-|++|+ +|++++...+-.+..
T Consensus 71 ~~G~~lLDiGCGWG~l~~~a---A~~y~v~V~---GvTlS~~Q~~~~~~r 114 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYA---AEEYGVTVV---GVTLSEEQLAYAEKR 114 (283)
T ss_pred CCCCEEEEeCCChhHHHHHH---HHHcCCEEE---EeeCCHHHHHHHHHH
Confidence 66789999999999988654 466688876 999999887766653
No 203
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=37.89 E-value=40 Score=37.07 Aligned_cols=55 Identities=18% Similarity=0.267 Sum_probs=35.2
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCe-eEeEEeecccHHHHHHHHhh-----CCCceeecCch
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLN-LVTRWAVDINEYACQSLKLN-----HPETEVRNESA 396 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~-~~~~~avd~~~~A~~t~~~N-----~p~~~v~~~~~ 396 (718)
...+|||+.||.|.++.=++ +..|-. .+ .+||+++..++..+.| ..+..+...|+
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA---~~~~~~g~V--vgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~ 140 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMS---RVVGEKGLV--VSVEYSRKICEIAKRNVRRLGIENVIFVCGDG 140 (322)
T ss_pred CCCEEEEEeCCccHHHHHHH---HhcCCCCEE--EEEECCHHHHHHHHHHHHHcCCCcEEEEeCCh
Confidence 45689999999999887774 233321 12 5999999876555443 22344555544
No 204
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=37.13 E-value=62 Score=33.36 Aligned_cols=59 Identities=14% Similarity=0.141 Sum_probs=38.8
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCC------CceeecCchHH
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHP------ETEVRNESAED 398 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p------~~~v~~~~~~~ 398 (718)
...++|||=||.|.++..|..-+...+.++ .++|+++.+++..+.+.. ...+...|+.+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v---~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~ 117 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKI---IGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH 117 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeE---EEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhh
Confidence 455899999999988877732111135555 499999998887776532 23455555543
No 205
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=36.90 E-value=64 Score=32.71 Aligned_cols=56 Identities=16% Similarity=0.270 Sum_probs=41.8
Q ss_pred ceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHH-----HHHHhhCCCceeecCchHHHH
Q 047980 340 KLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYAC-----QSLKLNHPETEVRNESAEDFL 400 (718)
Q Consensus 340 ~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~-----~t~~~N~p~~~v~~~~~~~~l 400 (718)
.+||+=||-|.+...++. ...+.+++ +||+....+ ...+.+.++..+++.|+..+|
T Consensus 20 l~lEIG~G~G~~l~~~A~--~~Pd~n~i---GiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l 80 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAK--RNPDINFI---GIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELL 80 (195)
T ss_dssp EEEEET-TTSHHHHHHHH--HSTTSEEE---EEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHH
T ss_pred eEEEecCCCCHHHHHHHH--HCCCCCEE---EEecchHHHHHHHHHHHhhcccceEEEEccHHHHH
Confidence 899999999999988843 55677775 999987554 455667899999999998765
No 206
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=36.80 E-value=55 Score=36.31 Aligned_cols=58 Identities=22% Similarity=0.324 Sum_probs=39.6
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCC--CceeecCchHH
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHP--ETEVRNESAED 398 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p--~~~v~~~~~~~ 398 (718)
....++|||=||.|.++..+... ..+.++ .++|+++...+..+.+.+ +..++..|+++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~--~~~~~V---tgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~ 171 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKH--VDAKNV---TILDQSPHQLAKAKQKEPLKECKIIEGDAED 171 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHH--CCCCEE---EEEECCHHHHHHHHHhhhccCCeEEeccHHh
Confidence 45679999999999988877321 123343 599999998887777643 44555555543
No 207
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=35.54 E-value=72 Score=36.15 Aligned_cols=59 Identities=14% Similarity=0.063 Sum_probs=41.3
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhh-----CCCceeecCchHHHH
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLN-----HPETEVRNESAEDFL 400 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N-----~p~~~v~~~~~~~~l 400 (718)
....+||+=||.|.+...+.. +.-+..+ .|||+++.++.....+ ..+..+++.|+..++
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~--~~P~~~~---iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll 185 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAK--NNPNKLF---IGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLL 185 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHH--hCCCCCE---EEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhh
Confidence 345899999999999988832 2224454 4999998775544333 457778888887764
No 208
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=35.24 E-value=44 Score=38.27 Aligned_cols=44 Identities=14% Similarity=0.079 Sum_probs=34.2
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH 386 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~ 386 (718)
...++||+=||.|+.+.-|. ...|.++ .++|+++.+.+.-+.|.
T Consensus 266 ~~~~vLDiGcG~G~~~~~la---~~~~~~v---~gvDiS~~~l~~A~~~~ 309 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMA---ENFDVHV---VGIDLSVNMISFALERA 309 (475)
T ss_pred CCCEEEEEeccCCHHHHHHH---HhcCCEE---EEEECCHHHHHHHHHHh
Confidence 45689999999999887773 3346654 59999999988777664
No 209
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=35.06 E-value=51 Score=27.66 Aligned_cols=49 Identities=24% Similarity=0.350 Sum_probs=32.7
Q ss_pred eccccccchhhHhHhhhhhhc-CCeeEeEEeecccHHHHHHHHhhCCCce--eecCchH
Q 047980 342 LDLYSGCGAMSTGLCLGANLA-GLNLVTRWAVDINEYACQSLKLNHPETE--VRNESAE 397 (718)
Q Consensus 342 lDLFsG~Gg~s~Gl~~g~~~a-G~~~~~~~avd~~~~A~~t~~~N~p~~~--v~~~~~~ 397 (718)
||+=||.|-.+..| ... +.++ +++|+++.+.+..+.+..... ++..|++
T Consensus 1 LdiG~G~G~~~~~l----~~~~~~~v---~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~ 52 (95)
T PF08241_consen 1 LDIGCGTGRFAAAL----AKRGGASV---TGIDISEEMLEQARKRLKNEGVSFRQGDAE 52 (95)
T ss_dssp EEET-TTSHHHHHH----HHTTTCEE---EEEES-HHHHHHHHHHTTTSTEEEEESBTT
T ss_pred CEecCcCCHHHHHH----HhccCCEE---EEEeCCHHHHHHHHhcccccCchheeehHH
Confidence 56667877777776 344 6665 599999999998888876543 4554443
No 210
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=34.85 E-value=37 Score=36.44 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=35.8
Q ss_pred ccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhh
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLN 385 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N 385 (718)
.+++||.=||.|=+|.-| .+.|..|. +||..+.+.++++..
T Consensus 90 g~~ilDvGCGgGLLSepL----Arlga~V~---GID~s~~~V~vA~~h 130 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPL----ARLGAQVT---GIDASDDMVEVANEH 130 (282)
T ss_pred CceEEEeccCccccchhh----HhhCCeeE---eecccHHHHHHHHHh
Confidence 467999999999999888 78898775 999999999998866
No 211
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=34.64 E-value=89 Score=25.06 Aligned_cols=36 Identities=22% Similarity=0.468 Sum_probs=24.6
Q ss_pred EecCCeEEEecCCCCCCeEEEEeEEeecCCCceEEEEE
Q 047980 189 YDLFDDAHVKAESGEEDYICKIVEMFEAVDGTPYFTAQ 226 (718)
Q Consensus 189 y~vGD~VyV~~~~~~p~yIgrI~~iwe~~~g~~~v~v~ 226 (718)
+.||+-|++.-.++.. |-|+|+.+-.. .|...+.|.
T Consensus 1 ~~vG~~v~~~~~~~~~-y~A~I~~~r~~-~~~~~YyVH 36 (55)
T PF11717_consen 1 FEVGEKVLCKYKDGQW-YEAKILDIREK-NGEPEYYVH 36 (55)
T ss_dssp --TTEEEEEEETTTEE-EEEEEEEEEEC-TTCEEEEEE
T ss_pred CCcCCEEEEEECCCcE-EEEEEEEEEec-CCCEEEEEE
Confidence 4689999999855554 99999999985 344333343
No 212
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=33.98 E-value=38 Score=38.56 Aligned_cols=62 Identities=27% Similarity=0.344 Sum_probs=48.0
Q ss_pred CCccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCC-----CceeecCchHHH
Q 047980 334 PQKMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHP-----ETEVRNESAEDF 399 (718)
Q Consensus 334 ~~~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p-----~~~v~~~~~~~~ 399 (718)
.++...++||++|-.||=++-+..=++..|. + +|.|.|..-+..++.|.+ +|.+.|.|...|
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~--I--~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef 304 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGV--I--FANDSNENRLKSLKANLHRLGVTNTIVSNYDGREF 304 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCce--E--EecccchHHHHHHHHHHHHhCCCceEEEccCcccc
Confidence 3577889999999999999877544566673 3 799999999999999854 666666665444
No 213
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=33.45 E-value=64 Score=28.33 Aligned_cols=43 Identities=9% Similarity=0.059 Sum_probs=34.1
Q ss_pred EEecCCeEEEecCCCCCCeEEEEeEEeecCCCceEEEEEEEEec
Q 047980 188 TYDLFDDAHVKAESGEEDYICKIVEMFEAVDGTPYFTAQWYYRA 231 (718)
Q Consensus 188 ~y~vGD~VyV~~~~~~p~yIgrI~~iwe~~~g~~~v~v~WFyRp 231 (718)
.|++||.|+-+- .+-|+|=|+|+..-+.......+.|+||.-.
T Consensus 2 ~f~~GdlVwaK~-kGyp~WPa~I~~~~~~~~~~~~~~V~FfGt~ 44 (83)
T cd05834 2 QFKAGDLVFAKV-KGYPAWPARVDEPEDWKPPGKKYPVYFFGTH 44 (83)
T ss_pred CCCCCCEEEEec-CCCCCCCEEEecccccCCCCCEEEEEEeCCC
Confidence 478999999998 4677799999998765444567899999854
No 214
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=33.14 E-value=64 Score=28.06 Aligned_cols=28 Identities=11% Similarity=0.113 Sum_probs=23.2
Q ss_pred EecCCeEEEecCC------CCCCeEEEEeEEeec
Q 047980 189 YDLFDDAHVKAES------GEEDYICKIVEMFEA 216 (718)
Q Consensus 189 y~vGD~VyV~~~~------~~p~yIgrI~~iwe~ 216 (718)
++.||+|.|+..+ ++..|+|+|+..-..
T Consensus 6 Vk~Gd~ViV~~~~~~~~~~~~dWWmg~Vi~~~gg 39 (75)
T PF11302_consen 6 VKPGDTVIVQDEQEVGQKQDKDWWMGQVIHCEGG 39 (75)
T ss_pred cCCCCEEEEecCccccccCCCCcEEEEEEEEecc
Confidence 5789999999976 467899999987654
No 215
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=33.08 E-value=1.7e+02 Score=32.29 Aligned_cols=94 Identities=18% Similarity=0.299 Sum_probs=60.9
Q ss_pred CCcccccccccccchhhhhhccccc-ccCCC--CCCccEEEecCCCCccccccccCCCC--------------CCcccch
Q 047980 490 TWEPIEGLSNCGEKIKEFVTHGFKS-KILPL--PGDVDVICGGPPCQGVSGFNRFRNKD--------------NPLADEK 552 (718)
Q Consensus 490 ~w~~~~~~~~~~~~i~e~~~~~~~~-~l~p~--~~~vDll~gGPPCQ~fS~ag~~r~~~--------------~~~~D~r 552 (718)
-|..+.+|.+-.+.++|-|.-..+= +++-- .+=--||..|||-.|-|-..+.-... ..+-.+.
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGES 210 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 210 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccH
Confidence 4999999999888888876532210 11100 01125899999999877433210000 0112345
Q ss_pred hhHHHHHHHHhhhcCCcEEEEecchhhhhcc
Q 047980 553 NKQLIVFMDIVDFLKPKFVLMENVVDIVKFA 583 (718)
Q Consensus 553 n~L~~~~~riv~~~kPk~~v~ENV~gll~~~ 583 (718)
-.|+...+.+.++.+|.++++.-|-.+-..+
T Consensus 211 EkLVknLFemARe~kPSIIFiDEiDslcg~r 241 (439)
T KOG0739|consen 211 EKLVKNLFEMARENKPSIIFIDEIDSLCGSR 241 (439)
T ss_pred HHHHHHHHHHHHhcCCcEEEeehhhhhccCC
Confidence 5688888999999999999999998766544
No 216
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=32.13 E-value=75 Score=33.39 Aligned_cols=58 Identities=26% Similarity=0.137 Sum_probs=36.3
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC-----CCceeecCchH
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH-----PETEVRNESAE 397 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~-----p~~~v~~~~~~ 397 (718)
....+||||=||.|..+.-+ ++..|.... +.+||+++...+..+.|. +.+.++..|++
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~---a~~~g~~~~-v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~ 138 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLA---ARRVGPTGK-VIGVDMTPEMLAKARANARKAGYTNVEFRLGEIE 138 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHH---HHHhCCCCE-EEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchh
Confidence 34569999988887655433 233343321 259999999888877663 34455555553
No 217
>PF08940 DUF1918: Domain of unknown function (DUF1918); InterPro: IPR015035 This domain is found in various hypothetical bacterial proteins, and has no known function. ; PDB: 2A7Y_A.
Probab=31.93 E-value=69 Score=26.49 Aligned_cols=40 Identities=28% Similarity=0.442 Sum_probs=25.8
Q ss_pred EEecCCeEEEecCC-CCCCeEEEEeEEeecCCCceEEEEEEE
Q 047980 188 TYDLFDDAHVKAES-GEEDYICKIVEMFEAVDGTPYFTAQWY 228 (718)
Q Consensus 188 ~y~vGD~VyV~~~~-~~p~yIgrI~~iwe~~~g~~~v~v~WF 228 (718)
.-++||.+.|.... +.+...|.|+++-.. +|..=+.|+|-
T Consensus 2 ~A~vGD~lvv~g~~vg~~~r~GeIveV~g~-dG~PPY~VRw~ 42 (58)
T PF08940_consen 2 HASVGDRLVVHGRTVGQPDRHGEIVEVRGP-DGSPPYLVRWD 42 (58)
T ss_dssp ---TTEEEEES-TTTS--EEEEEEEE-S-S-SS-S-EEEEET
T ss_pred CCCCCCEEEEcCCcCCCCCcEeEEEEEECC-CCCCCEEEEec
Confidence 34789999999987 788899999998775 67777789995
No 218
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=31.74 E-value=44 Score=40.74 Aligned_cols=64 Identities=33% Similarity=0.315 Sum_probs=45.8
Q ss_pred ccccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC--C--CceeecCchHHHHHHHHHH
Q 047980 336 KMDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH--P--ETEVRNESAEDFLTLLREW 406 (718)
Q Consensus 336 ~~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~--p--~~~v~~~~~~~~l~~lke~ 406 (718)
.+..+++|=|+|.|..- | + +.+.|.+++ |||.||.|.-.++.-+ | -.....+|.+.|...+++|
T Consensus 89 ~~~~~~lDPfAG~GSIP--l-E-AlRLG~~v~---AvelnPvAylfLKavlEyPkkfg~~liedv~~~~~wI~e~ 156 (875)
T COG1743 89 FEGPKLLDPFAGGGSIP--L-E-ALRLGLEVV---AVELNPVAYLFLKAVLEYPKKFGPELIEDVERWGAWITEQ 156 (875)
T ss_pred ccCCcccccccCCCccc--h-H-HHhcCceeE---EEecccHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHH
Confidence 45568999999988543 3 2 256888886 9999999988877664 2 1223356778888888776
No 219
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=31.73 E-value=3.7e+02 Score=29.04 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=24.1
Q ss_pred cccchhhHhHhhhhhhcCC--eeEeEEeecccHHHHHHH
Q 047980 346 SGCGAMSTGLCLGANLAGL--NLVTRWAVDINEYACQSL 382 (718)
Q Consensus 346 sG~Gg~s~Gl~~g~~~aG~--~~~~~~avd~~~~A~~t~ 382 (718)
-|+|++...+...+...|+ ++ ..+|+++..++..
T Consensus 6 IGaG~vG~~~a~~l~~~g~~~ei---~l~D~~~~~~~~~ 41 (306)
T cd05291 6 IGAGHVGSSFAYSLVNQGIADEL---VLIDINEEKAEGE 41 (306)
T ss_pred ECCCHHHHHHHHHHHhcCCCCEE---EEEeCCcchhhHh
Confidence 4889888888777777785 34 4788877665544
No 220
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=31.60 E-value=89 Score=32.00 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=41.6
Q ss_pred ccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCCCceeecCchHHHH
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHPETEVRNESAEDFL 400 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p~~~v~~~~~~~~l 400 (718)
.-+||||=||-|-+-.=|. ..-++.. .+||+|+..+..-..+ +..|+..|+++-|
T Consensus 14 gsrVLDLGCGdG~LL~~L~---~~k~v~g---~GvEid~~~v~~cv~r--Gv~Viq~Dld~gL 68 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLK---DEKQVDG---YGVEIDPDNVAACVAR--GVSVIQGDLDEGL 68 (193)
T ss_pred CCEEEecCCCchHHHHHHH---HhcCCeE---EEEecCHHHHHHHHHc--CCCEEECCHHHhH
Confidence 4689999999987765552 2345554 6999999987776666 6778999998764
No 221
>PF10383 Clr2: Transcription-silencing protein Clr2 ; InterPro: IPR018839 Clr2 (cryptic loci regulator) is a chromatin silencing protein, one of a quartet of proteins forming the core of SHREC, a multienzyme effector complex that mediates hetero-chromatic transcriptional gene silencing in fission yeast []. Clr2 does not have any obvious well-conserved domains but, along with the other core proteins, binds to the histone deacetylase Clr3, and on its own might also have a role in chromatin organisation at the cnt domain, the site of kinetochore assembly.
Probab=30.35 E-value=1.8e+02 Score=28.04 Aligned_cols=51 Identities=16% Similarity=0.050 Sum_probs=35.5
Q ss_pred eeeEEEECCEEEEecCCeEEEecC-----------CCCCCeEEEEeEEeecCCC-------ceEEEEEEE
Q 047980 177 HYMWAEVDGHITYDLFDDAHVKAE-----------SGEEDYICKIVEMFEAVDG-------TPYFTAQWY 228 (718)
Q Consensus 177 ~Y~s~~v~G~~~y~vGD~VyV~~~-----------~~~p~yIgrI~~iwe~~~g-------~~~v~v~WF 228 (718)
||+.+-++.+ .+.|||.|-|++. .++..-|=.|.+|...... ...|++.=|
T Consensus 2 ~y~GiflGAE-~I~vGD~VRl~~~~~~~~~~~~~~~~~~tdvMvI~~I~~~~~~~~~~~~~~v~~~G~lY 70 (139)
T PF10383_consen 2 YYRGIFLGAE-MIWVGDAVRLKPLNASPSPNQSDGNPDVTDVMVIDEIQLRLINCDPDSPSTVRFRGDLY 70 (139)
T ss_pred eECeEEEeeE-EEEeCCEEEECccCCCcccccccCCCCceeEEEEeEEEEecccCCCCCCceEEEEeEec
Confidence 7888889888 9999999999542 1334467777777765433 355655544
No 222
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=30.11 E-value=90 Score=36.24 Aligned_cols=64 Identities=20% Similarity=0.252 Sum_probs=47.8
Q ss_pred eeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCCCceeecCchHHHHHHHHHHHH
Q 047980 341 LLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHPETEVRNESAEDFLTLLREWEK 408 (718)
Q Consensus 341 ~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p~~~v~~~~~~~~l~~lke~~~ 408 (718)
-+-|=||.|||+-.=-+++..+|.-.+ .||+|+.+++. ++...-...+..|+++.|.++++..+
T Consensus 159 ~~~lTaGLGGMgGAQPlA~~mag~v~i---~vEvd~~ri~k-R~~~gyld~~~~~ldeal~~~~~a~~ 222 (545)
T TIGR01228 159 KWVLTAGLGGMGGAQPLAVTMNGGVSI---AVEVDESRIDK-RLETKYCDEQTDSLDEALARAEEAKA 222 (545)
T ss_pred eEEEEeCCCccccccHHHHHHcCceEE---EEEECHHHHHH-HHhcCcceeEcCCHHHHHHHHHHHHH
Confidence 345679999999554467788887554 89999999875 34444466678899999988888754
No 223
>COG4014 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.89 E-value=1e+02 Score=27.59 Aligned_cols=38 Identities=18% Similarity=0.362 Sum_probs=29.7
Q ss_pred ecCCe-EEEecCCCCCCeEEEEeEEeecCCCceEEEEE---EEEecc
Q 047980 190 DLFDD-AHVKAESGEEDYICKIVEMFEAVDGTPYFTAQ---WYYRAR 232 (718)
Q Consensus 190 ~vGD~-VyV~~~~~~p~yIgrI~~iwe~~~g~~~v~v~---WFyRpe 232 (718)
.|||. +||..+ -+|||..|.+..+|..||.+- -+||+.
T Consensus 10 ~VG~avrYvnTg-----TvgrV~dIkkdEdG~~WV~LdstdLwYre~ 51 (97)
T COG4014 10 KVGDAVRYVNTG-----TVGRVVDIKKDEDGDIWVVLDSTDLWYREH 51 (97)
T ss_pred hhcceEEEeecC-----ceeeEEEEEeecCCceEEEEecCCceeccc
Confidence 48888 566665 699999999999999999763 356654
No 224
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=29.60 E-value=1.1e+02 Score=33.74 Aligned_cols=79 Identities=19% Similarity=0.273 Sum_probs=52.4
Q ss_pred CCCCCcccccccccc--cchhhhhhcccccccCCCCCCccEEEecCCCCccccccccCCCCCCcccchhhHHHHHHHHhh
Q 047980 487 SEDTWEPIEGLSNCG--EKIKEFVTHGFKSKILPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVD 564 (718)
Q Consensus 487 ~~d~w~~~~~~~~~~--~~i~e~~~~~~~~~l~p~~~~vDll~gGPPCQ~fS~ag~~r~~~~~~~D~rn~L~~~~~riv~ 564 (718)
+.-.|.+..+.++++ |.|. +-.+.|||+--|| || ||.+|+.+|-
T Consensus 111 ~~~~~~~l~GdGDFrS~E~i~-------------Ll~eADIVVTNPP---FS------------------LFrEyv~~Li 156 (336)
T PF13651_consen 111 DDIEVTPLKGDGDFRSDECIE-------------LLKEADIVVTNPP---FS------------------LFREYVAQLI 156 (336)
T ss_pred cccceeeccCCCCcCcHHHHH-------------HHhcCCEEEeCCC---cH------------------HHHHHHHHHH
Confidence 344677777777664 3221 1247899999998 66 7889999999
Q ss_pred hcCCcEEEEecchhhhhcccchHHHHHHHHHHhCCceE
Q 047980 565 FLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQV 602 (718)
Q Consensus 565 ~~kPk~~v~ENV~gll~~~~g~~~~~i~~~L~~lGY~v 602 (718)
+.+=+++|+=|...+.-. .+|..|...-.=+||..
T Consensus 157 ~~~KkFlIIGN~NaiTYk---eiFplik~nk~WlG~~~ 191 (336)
T PF13651_consen 157 EYDKKFLIIGNINAITYK---EIFPLIKENKIWLGYTF 191 (336)
T ss_pred HhCCCEEEEeccccccHH---HHHHHHhcCcEEecccc
Confidence 999999999998655321 23333333222357766
No 225
>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The KOW (Kyprides, Ouzounis, Woese) motif is found in a variety of ribosomal proteins and the bacterial transcription antitermination proteins NusG []. ; PDB: 3BBO_W 2HGJ_X 2HGQ_X 2HGU_X 1NPP_B 1M1G_D 1NPR_A 2XHC_A 2KVQ_G 2JVV_A ....
Probab=28.37 E-value=97 Score=22.01 Aligned_cols=26 Identities=27% Similarity=0.144 Sum_probs=22.6
Q ss_pred cCCeEEEecCCCCCCeEEEEeEEeecC
Q 047980 191 LFDDAHVKAESGEEDYICKIVEMFEAV 217 (718)
Q Consensus 191 vGD~VyV~~~~~~p~yIgrI~~iwe~~ 217 (718)
+||.|.|..+...- .+|+|.++....
T Consensus 1 ~Gd~V~V~~G~~~G-~~G~I~~i~~~~ 26 (32)
T PF00467_consen 1 VGDTVKVISGPFKG-KIGKIVEIDRSK 26 (32)
T ss_dssp TTSEEEESSSTTTT-EEEEEEEEETTT
T ss_pred CCCEEEEeEcCCCC-ceEEEEEEECCC
Confidence 59999999998776 899999998765
No 226
>cd05835 Dnmt3b_related The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis. In tumorigenesis, DNA methylation by Dnmt3b is known to play a role in the inactivation of tumor suppressor genes. In addition, a point mutation in the PWWP domain of Dnmt3b has been identified in patients with ICF syndrome (immunodeficiency, centromeric instability, and facial anomalies), a rare autosomal recessive disorder characterized by hypomethylation of classical satellite DNA. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=28.02 E-value=69 Score=28.25 Aligned_cols=40 Identities=13% Similarity=0.094 Sum_probs=30.7
Q ss_pred EecCCeEEEecCCCCCCeEEEEeEEeecC---CCceEEEEEEEE
Q 047980 189 YDLFDDAHVKAESGEEDYICKIVEMFEAV---DGTPYFTAQWYY 229 (718)
Q Consensus 189 y~vGD~VyV~~~~~~p~yIgrI~~iwe~~---~g~~~v~v~WFy 229 (718)
|++||-|..+-. +-|.|=|+|++..... .....+.|+||-
T Consensus 1 f~vGDlVWaK~k-g~pwWP~~V~~~~~~~~~~~~~~~~~V~fFG 43 (87)
T cd05835 1 FNVGDLVWGKIK-GFPWWPGRVVSITVTSKRPPVVGMRWVTWFG 43 (87)
T ss_pred CCCCCEEEEecC-CCCCCCeEEechhhcccccCCCCeEEEEEeC
Confidence 578999999984 5667999999987653 123568899997
No 227
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=26.66 E-value=90 Score=29.61 Aligned_cols=48 Identities=27% Similarity=0.271 Sum_probs=34.4
Q ss_pred CccccceeccccccchhhHhHhhhhh--hcCCeeEeEEeecccHHHHHHHHhh
Q 047980 335 QKMDVKLLDLYSGCGAMSTGLCLGAN--LAGLNLVTRWAVDINEYACQSLKLN 385 (718)
Q Consensus 335 ~~~~~~~lDLFsG~Gg~s~Gl~~g~~--~aG~~~~~~~avd~~~~A~~t~~~N 385 (718)
.....+++|+-||-|=+|.-|..-+. ..+.++ .+||.++...+.....
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v---~~iD~~~~~~~~a~~~ 72 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRV---LGIDCNESLVESAQKR 72 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeE---EEEECCcHHHHHHHHH
Confidence 46678999999999999988843221 245665 4999998876654443
No 228
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=26.04 E-value=1.2e+02 Score=35.27 Aligned_cols=62 Identities=21% Similarity=0.224 Sum_probs=42.6
Q ss_pred eccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHH-HHhhCCCceeecCchHHHHHHHHHHHH
Q 047980 342 LDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQS-LKLNHPETEVRNESAEDFLTLLREWEK 408 (718)
Q Consensus 342 lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t-~~~N~p~~~v~~~~~~~~l~~lke~~~ 408 (718)
+=|=||.||||-.=-+++..+|.-.+ .||+|+.+++. ++..+ ......|+++.+.++++...
T Consensus 159 ~~lTaGLGGMgGAQplA~~m~g~v~l---~vEvd~~ri~kR~~~g~--ld~~~~~ldea~~~~~ea~~ 221 (546)
T PF01175_consen 159 LFLTAGLGGMGGAQPLAATMAGGVGL---IVEVDPSRIEKRLEQGY--LDEVTDDLDEALARAKEARA 221 (546)
T ss_dssp EEEEE--STTCCHHHHHHHHTT-EEE---EEES-HHHHHHHHHTTS--SSEEESSHHHHHHHHHHHHH
T ss_pred EEEEecccccccchHHHHHhcCceEE---EEEECHHHHHHHHhCCC--eeEEcCCHHHHHHHHHHhhc
Confidence 44679999999555567788887554 89999999875 34443 45567889999999988754
No 229
>PRK05414 urocanate hydratase; Provisional
Probab=25.97 E-value=1.2e+02 Score=35.49 Aligned_cols=63 Identities=25% Similarity=0.344 Sum_probs=47.3
Q ss_pred eccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCCCceeecCchHHHHHHHHHHHH
Q 047980 342 LDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHPETEVRNESAEDFLTLLREWEK 408 (718)
Q Consensus 342 lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p~~~v~~~~~~~~l~~lke~~~ 408 (718)
+=|=||.||||-.=-+++..+|.-.+ .||+|+.+++. +++..-...+..|+++.+.++++..+
T Consensus 169 ~~lTaGLGGMgGAQPlA~~mag~v~i---~vEvd~~ri~k-R~~~gyld~~~~~Ldeal~~~~~a~~ 231 (556)
T PRK05414 169 LVLTAGLGGMGGAQPLAATMAGAVCL---AVEVDESRIDK-RLRTGYLDEKADDLDEALALAEEAKA 231 (556)
T ss_pred EEEEecCCccccccHHHHHhcCceEE---EEEECHHHHHH-HHhCCcceeEcCCHHHHHHHHHHHHH
Confidence 44679999999544467788887554 89999999875 44445566678889999988888654
No 230
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=25.09 E-value=1.1e+02 Score=26.38 Aligned_cols=41 Identities=17% Similarity=0.201 Sum_probs=34.1
Q ss_pred ccccchhhHhHhhhhhhcC---CeeEeEEeecccHHHHHHHHhhCC
Q 047980 345 YSGCGAMSTGLCLGANLAG---LNLVTRWAVDINEYACQSLKLNHP 387 (718)
Q Consensus 345 FsG~Gg~s~Gl~~g~~~aG---~~~~~~~avd~~~~A~~t~~~N~p 387 (718)
|-|+|.|...|-.|+..+| .++. +..+.++...+.+...++
T Consensus 4 iIG~G~mg~al~~~l~~~g~~~~~v~--~~~~r~~~~~~~~~~~~~ 47 (96)
T PF03807_consen 4 IIGAGNMGSALARGLLASGIKPHEVI--IVSSRSPEKAAELAKEYG 47 (96)
T ss_dssp EESTSHHHHHHHHHHHHTTS-GGEEE--EEEESSHHHHHHHHHHCT
T ss_pred EECCCHHHHHHHHHHHHCCCCceeEE--eeccCcHHHHHHHHHhhc
Confidence 4599999999999999999 6654 355999999988888877
No 231
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=24.44 E-value=98 Score=31.29 Aligned_cols=42 Identities=19% Similarity=0.186 Sum_probs=31.6
Q ss_pred ceeccccccchhhHhHhhhhhhc-CCeeEeEEeecccHHHHHHHHhhCC
Q 047980 340 KLLDLYSGCGAMSTGLCLGANLA-GLNLVTRWAVDINEYACQSLKLNHP 387 (718)
Q Consensus 340 ~~lDLFsG~Gg~s~Gl~~g~~~a-G~~~~~~~avd~~~~A~~t~~~N~p 387 (718)
++||+=||.|+++.-+. +.. +.++ .++|+++...+..+.++.
T Consensus 2 ~vLDiGcG~G~~~~~la---~~~~~~~v---~gid~s~~~~~~a~~~~~ 44 (224)
T smart00828 2 RVLDFGCGYGSDLIDLA---ERHPHLQL---HGYTISPEQAEVGRERIR 44 (224)
T ss_pred eEEEECCCCCHHHHHHH---HHCCCCEE---EEEECCHHHHHHHHHHHH
Confidence 58999999999887663 222 4554 499999998887777754
No 232
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=23.71 E-value=1.1e+02 Score=34.35 Aligned_cols=57 Identities=25% Similarity=0.396 Sum_probs=33.9
Q ss_pred CCccEEEecCCCCcccc-ccc----------cCCCCCCcccchhhHHHH--------HHHHhhhcCCcEEEEecchh
Q 047980 521 GDVDVICGGPPCQGVSG-FNR----------FRNKDNPLADEKNKQLIV--------FMDIVDFLKPKFVLMENVVD 578 (718)
Q Consensus 521 ~~vDll~gGPPCQ~fS~-ag~----------~r~~~~~~~D~rn~L~~~--------~~riv~~~kPk~~v~ENV~g 578 (718)
-+|-+|.||||-++|-. +|- .+++.-+..|-.+. +.+ .+..++.++|++||+||+|-
T Consensus 42 ~~Il~IsG~~~~~~F~~~~gVd~V~LPsl~k~~~G~~~~~d~~~~-l~e~~~~Rs~lil~t~~~fkPDi~IVd~~P~ 117 (400)
T COG4671 42 FDILIISGGPPAGGFPGPAGVDFVKLPSLIKGDNGEYGLVDLDGD-LEETKKLRSQLILSTAETFKPDIFIVDKFPF 117 (400)
T ss_pred ceEEEEeCCCccCCCCCcccCceEecCceEecCCCceeeeecCCC-HHHHHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 46889999999999976 221 11111111111111 112 23456678999999999984
No 233
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=23.58 E-value=1.1e+02 Score=31.76 Aligned_cols=51 Identities=22% Similarity=0.271 Sum_probs=43.3
Q ss_pred ccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCCCceeecCchHH
Q 047980 345 YSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHPETEVRNESAED 398 (718)
Q Consensus 345 FsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p~~~v~~~~~~~ 398 (718)
..|||=+...++.-+...|.+++ +||.|+..++.+...-..+.+++.|+.+
T Consensus 5 IiG~G~vG~~va~~L~~~g~~Vv---~Id~d~~~~~~~~~~~~~~~~v~gd~t~ 55 (225)
T COG0569 5 IIGAGRVGRSVARELSEEGHNVV---LIDRDEERVEEFLADELDTHVVIGDATD 55 (225)
T ss_pred EECCcHHHHHHHHHHHhCCCceE---EEEcCHHHHHHHhhhhcceEEEEecCCC
Confidence 46999999999988999999987 8999999999988866677777777755
No 234
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=22.72 E-value=1.3e+02 Score=31.56 Aligned_cols=40 Identities=18% Similarity=0.190 Sum_probs=32.3
Q ss_pred ccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHh
Q 047980 338 DVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKL 384 (718)
Q Consensus 338 ~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~ 384 (718)
..+||+.=||-|-=..=| ...|++|+ |||+++.|++.+..
T Consensus 44 ~~rvLvPgCGkg~D~~~L----A~~G~~V~---GvDlS~~Ai~~~~~ 83 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFF----LSKGVKVI---GIELSEKAVLSFFS 83 (226)
T ss_pred CCeEEEeCCCChHHHHHH----HhCCCcEE---EEecCHHHHHHHHH
Confidence 458999988888655555 67899975 99999999998755
No 235
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=22.19 E-value=1.3e+02 Score=37.81 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=42.5
Q ss_pred eeeEEEECCEEEEecCCeEEEecCCCC-----------------------CCeEEEEeEEeecCC-CceEEEEEEEEecc
Q 047980 177 HYMWAEVDGHITYDLFDDAHVKAESGE-----------------------EDYICKIVEMFEAVD-GTPYFTAQWYYRAR 232 (718)
Q Consensus 177 ~Y~s~~v~G~~~y~vGD~VyV~~~~~~-----------------------p~yIgrI~~iwe~~~-g~~~v~v~WFyRpe 232 (718)
-|.++.++++ .|.+||.|+|--..+. ..-=|+|-.|+.+.. ....+.|+.||--.
T Consensus 442 iye~~~in~~-~ys~g~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~kg~is~fy~~~~~~~~~~e~c~y~d~~ 520 (1164)
T PTZ00112 442 IYESIQINDV-EYSIGDDVLIFCTGNGNTYNGKSGTKKNQNNKNIKENIYQLRKGKISSFYKNTNSNQVEAEVCIYYDQH 520 (1164)
T ss_pred EEEEEEEcce-eeccCCcEEEEEcCCCCccccccCccccccccchhhhhheecccccchhhhcCCCceeeEEEEEEEccc
Confidence 4679999999 9999999887654210 223588999997654 44668999999777
Q ss_pred cC
Q 047980 233 DT 234 (718)
Q Consensus 233 ET 234 (718)
|-
T Consensus 521 d~ 522 (1164)
T PTZ00112 521 DA 522 (1164)
T ss_pred cH
Confidence 64
No 236
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=21.41 E-value=1.2e+02 Score=28.71 Aligned_cols=54 Identities=17% Similarity=0.219 Sum_probs=37.0
Q ss_pred cccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhCCCceeecCchHHH
Q 047980 344 LYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNHPETEVRNESAEDF 399 (718)
Q Consensus 344 LFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~p~~~v~~~~~~~~ 399 (718)
|.-|+||++.+.+..+...|++-++ -+.-+..-.+.+...+++..+...+.+++
T Consensus 16 lviGaGg~ar~v~~~L~~~g~~~i~--i~nRt~~ra~~l~~~~~~~~~~~~~~~~~ 69 (135)
T PF01488_consen 16 LVIGAGGAARAVAAALAALGAKEIT--IVNRTPERAEALAEEFGGVNIEAIPLEDL 69 (135)
T ss_dssp EEESSSHHHHHHHHHHHHTTSSEEE--EEESSHHHHHHHHHHHTGCSEEEEEGGGH
T ss_pred EEECCHHHHHHHHHHHHHcCCCEEE--EEECCHHHHHHHHHHcCccccceeeHHHH
Confidence 3459999999999999999998553 45566666666666665554433344443
No 237
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=21.40 E-value=1.2e+02 Score=30.34 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=28.8
Q ss_pred cccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhh
Q 047980 346 SGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLN 385 (718)
Q Consensus 346 sG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N 385 (718)
-|+|-|..|+..-+..+|++|. .+|.|+.+.+.....
T Consensus 5 iGaG~mG~~iA~~~a~~G~~V~---l~d~~~~~l~~~~~~ 41 (180)
T PF02737_consen 5 IGAGTMGRGIAALFARAGYEVT---LYDRSPEALERARKR 41 (180)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEE---EE-SSHHHHHHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCcEE---EEECChHHHHhhhhH
Confidence 4899999999888888999986 799999988766543
No 238
>PLN02366 spermidine synthase
Probab=21.15 E-value=1.9e+02 Score=31.60 Aligned_cols=59 Identities=15% Similarity=0.201 Sum_probs=40.4
Q ss_pred cccceeccccccchhhHhHhhhhhhcCCeeEeEEeecccHHHHHHHHhhC---------CCceeecCchHHHH
Q 047980 337 MDVKLLDLYSGCGAMSTGLCLGANLAGLNLVTRWAVDINEYACQSLKLNH---------PETEVRNESAEDFL 400 (718)
Q Consensus 337 ~~~~~lDLFsG~Gg~s~Gl~~g~~~aG~~~~~~~avd~~~~A~~t~~~N~---------p~~~v~~~~~~~~l 400 (718)
.+-+||++=+|.|++..-+. +..++.-+ ..||+|+...+..+..+ |..+++.+|+..|+
T Consensus 91 ~pkrVLiIGgG~G~~~rell---k~~~v~~V--~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l 158 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIA---RHSSVEQI--DICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFL 158 (308)
T ss_pred CCCeEEEEcCCccHHHHHHH---hCCCCCeE--EEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHH
Confidence 35689999888888776662 33344333 48999998777766655 45677778876654
No 239
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=20.69 E-value=1.5e+02 Score=19.67 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=20.3
Q ss_pred EecCCeEEEecCCCCCCeEEEEeEEe
Q 047980 189 YDLFDDAHVKAESGEEDYICKIVEMF 214 (718)
Q Consensus 189 y~vGD~VyV~~~~~~p~yIgrI~~iw 214 (718)
+.+||.|.|..+...- .+|.|.++.
T Consensus 2 ~~~G~~V~I~~G~~~g-~~g~i~~i~ 26 (28)
T smart00739 2 FEVGDTVRVIAGPFKG-KVGKVLEVD 26 (28)
T ss_pred CCCCCEEEEeECCCCC-cEEEEEEEc
Confidence 5789999999987665 788888874
No 240
>COG5475 Uncharacterized small protein [Function unknown]
Probab=20.57 E-value=1.9e+02 Score=23.86 Aligned_cols=38 Identities=11% Similarity=0.267 Sum_probs=25.4
Q ss_pred EEEecCCeEEEecCCCCCCeEEEEeEEeecCCCceEEEEEEEEecc
Q 047980 187 ITYDLFDDAHVKAESGEEDYICKIVEMFEAVDGTPYFTAQWYYRAR 232 (718)
Q Consensus 187 ~~y~vGD~VyV~~~~~~p~yIgrI~~iwe~~~g~~~v~v~WFyRpe 232 (718)
+.+.+||.|-|+.+.+.- |+.=. ...-++.++||-+..
T Consensus 3 ~~FstgdvV~lKsGGP~M-----tvs~~---ss~Gmy~C~Wf~g~g 40 (60)
T COG5475 3 MSFSTGDVVTLKSGGPRM-----TVSGY---SSDGMYECRWFDGYG 40 (60)
T ss_pred ceeecCcEEEeecCCceE-----EEecc---ccCCeEEEEEecCCC
Confidence 379999999999876432 22211 122578999998754
No 241
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=20.42 E-value=1.2e+02 Score=36.91 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=21.2
Q ss_pred EEeecccHHHHHHHHhhCCC------ceeecCchHH
Q 047980 369 RWAVDINEYACQSLKLNHPE------TEVRNESAED 398 (718)
Q Consensus 369 ~~avd~~~~A~~t~~~N~p~------~~v~~~~~~~ 398 (718)
+.++|+|+.|.+.-+.|--. ..+.+.|+.+
T Consensus 259 i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~ 294 (702)
T PRK11783 259 FYGSDIDPRVIQAARKNARRAGVAELITFEVKDVAD 294 (702)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhh
Confidence 47999999999999988431 3445555544
Done!