BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047983
(233 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PDX|A Chain A, Crystal Structural Of Mouse Tyrosine Aminotransferase
Length = 402
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 26/222 (11%)
Query: 12 IMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGIL 71
+ ++ADE+YG +VF + + PM + VP+L+ G ++ RW+VPGWRLGW++ D I
Sbjct: 202 VPILADEIYGDMVFSDCKYEPMATLSTNVPILSCGGLAXRWLVPGWRLGWILIHDRRDIF 261
Query: 72 QDLGVAFFHSISLNMRMDDYLLLSESVYTTV----GAVPQILEKTEEEFFSKITDILREA 127
N D + LS+ + GA+ IL++T +EF+ L+
Sbjct: 262 G------------NEIRDGLVKLSQRILGPCTIVQGALKSILQRTPQEFYQDTLSFLKSN 309
Query: 128 ADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKE 187
AD+C L IP + P +P G+M++M + + +D EF +L E
Sbjct: 310 ADLCYGALSAIPGLQ-PVRPSGAMYLM---------VGIEMEHFPEFENDVEFTERLIAE 359
Query: 188 ESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRH 229
+S+ LP ++ R+ V R++ F +H
Sbjct: 360 QSVHCLPATCFEYPNFFRVVITVPEVMMLEACSRIQEFCEQH 401
>pdb|3DYD|A Chain A, Human Tyrosine Aminotransferase
pdb|3DYD|B Chain B, Human Tyrosine Aminotransferase
Length = 427
Score = 103 bits (258), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 26/222 (11%)
Query: 12 IMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGIL 71
+ ++ADE+YG +VF + + P+ + VP+L+ G ++KRW+VPGWRLGW++ D I
Sbjct: 225 VPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIF 284
Query: 72 QDLGVAFFHSISLNMRMDDYLLLSESVYTTV----GAVPQILEKTEEEFFSKITDILREA 127
N D + LS+ + GA+ IL +T EF+ L+
Sbjct: 285 G------------NEIRDGLVKLSQRILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSN 332
Query: 128 ADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKE 187
AD+C L IP + P +P G+M++M + + +D EF +L E
Sbjct: 333 ADLCYGALAAIPGLR-PVRPSGAMYLM---------VGIEMEHFPEFENDVEFTERLVAE 382
Query: 188 ESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRH 229
+S+ LP +++R+ V R++ F +H
Sbjct: 383 QSVHCLPATCFEYPNFIRVVITVPEVMMLEACSRIQEFCEQH 424
>pdb|1BW0|A Chain A, Crystal Structure Of Tyrosine Aminotransferase From
Trypanosoma Cruzi
pdb|1BW0|B Chain B, Crystal Structure Of Tyrosine Aminotransferase From
Trypanosoma Cruzi
Length = 416
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 107/229 (46%), Gaps = 25/229 (10%)
Query: 7 TKKLGIMVIADEVYGHLVFG----NTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 62
++L + + +DE+Y +VF N F + F + VP + LG + +VPGWRLGWL
Sbjct: 206 AEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAXNLVVPGWRLGWL 265
Query: 63 VTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITD 122
+ DP+G G +F + R+ +L+ A+ + L T +E +I
Sbjct: 266 LYVDPHGN----GPSFLEGLK---RVG--MLVCGPCTVVQAALGEALLNTPQEHLDQIVA 316
Query: 123 ILREAADICCDRLKEIPCIT-CPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFA 181
+ E+A + + E CI P P G+M++M +++ I +D EF
Sbjct: 317 KIEESAMYLYNHIGE--CIGLAPTMPRGAMYLMS---------RIDLEKYRDIKTDVEFF 365
Query: 182 LKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHA 230
KL +EE++ VLPG + R+T + + R+KAF RHA
Sbjct: 366 EKLLEEENVQVLPGTIFHAPGFTRLTTTRPVEVYREAVERIKAFCQRHA 414
>pdb|1XI9|A Chain A, Alanine Aminotransferase From Pyrococcus Furiosus
Pfu-1397077-001
pdb|1XI9|B Chain B, Alanine Aminotransferase From Pyrococcus Furiosus
Pfu-1397077-001
pdb|1XI9|C Chain C, Alanine Aminotransferase From Pyrococcus Furiosus
Pfu-1397077-001
pdb|1XI9|D Chain D, Alanine Aminotransferase From Pyrococcus Furiosus
Pfu-1397077-001
Length = 406
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 12/142 (8%)
Query: 12 IMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGIL 71
I VI+DE+Y + + H P G VPV+ + +SK + GWRLG++ DP L
Sbjct: 208 IPVISDEIYDLMTYEGEHISP-GSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKL 266
Query: 72 QDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADIC 131
++ A + + + + + + + + + ++ + L+E D
Sbjct: 267 SEVREAIDRLARIRLCPN-----TPAQFAAIAGLTGPM-----DYLKEYMKKLKERRDYI 316
Query: 132 CDRLKEIPCITCPKKPEGSMFV 153
RL EIP I+ KP+G+ ++
Sbjct: 317 YKRLNEIPGIST-TKPQGAFYI 337
>pdb|2Z61|A Chain A, Crystal Structure Of Mj0684 From Methanococcus Jannaschii
Reveals Its Similarity In The Active Site To Kynurenine
Aminotransferases
Length = 370
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 90/214 (42%), Gaps = 34/214 (15%)
Query: 14 VIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD 73
+I+DE+Y LV+ + + ++ + + S + + GWR+G+++++D
Sbjct: 186 IISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSXLYAMTGWRIGYVISND------- 238
Query: 74 LGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAADICCD 133
I +++ L +S + A+ ++TE E S I + R +
Sbjct: 239 ------EIIEAILKLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRR-LVLK 291
Query: 134 RLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKEESIIVL 193
+K+ P G+ +V ED EFA KL KE+ + +
Sbjct: 292 YVKDFGWEV--NNPIGAYYVFPNIGED----------------GREFAYKLLKEKFVALT 333
Query: 194 PGITVGL--KDWLRITFAVEPSAFEIGLGRMKAF 225
PGI G K+++RI++A + GL R+K F
Sbjct: 334 PGIGFGSKGKNYIRISYANSYENIKEGLERIKEF 367
>pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum
pdb|1J32|B Chain B, Aspartate Aminotransferase From Phormidium Lapideum
Length = 388
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/228 (17%), Positives = 95/228 (41%), Gaps = 31/228 (13%)
Query: 2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFG--SIVPVLTLGSISKRWIVPGWRL 59
I + + G+ V++DE+Y +++ + + +G + + +K + + GWR+
Sbjct: 187 AIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRV 246
Query: 60 GWLVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSK 119
G+L + P +++ HS S + + GA+ + ++ +
Sbjct: 247 GFL--AGPVPLVKAATKIQGHSTS-----------NVCTFAQYGAIAAY--ENSQDCVQE 291
Query: 120 ITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTE 179
+ E D L +P + CP KP+G+ ++ S+ + S +
Sbjct: 292 MLAAFAERRRYMLDALNAMPGLECP-KPDGAFYMF-------------PSIAKTGRSSLD 337
Query: 180 FALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYY 227
F +L + + +PG G D +R+++A + + G+ R++ F +
Sbjct: 338 FCSELLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKFLH 385
>pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-form
pdb|1GDE|B Chain B, Crystal Structure Of Pyrococcus Protein A-1 E-form
pdb|1GD9|A Chain A, Crystall Structure Of Pyrococcus Protein-A1
pdb|1GD9|B Chain B, Crystall Structure Of Pyrococcus Protein-A1
Length = 389
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 92/218 (42%), Gaps = 37/218 (16%)
Query: 12 IMVIADEVYGHLVFGNT-HFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGI 70
++VI+DEVY H ++ + H+ + G +T+ SK + + GWRLG++ P+ I
Sbjct: 194 LIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAA--PSWI 251
Query: 71 LQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILRE---A 127
++ RM + + + + T +E + + ++ +E
Sbjct: 252 IE--------------RMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRR 297
Query: 128 ADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKE 187
+ RL E+ T KP+G+ F ++ D L +S L + KE
Sbjct: 298 RKLVWKRLNEMGLPTV--KPKGA-FYIFPRIRDTGLTSKKFSEL------------MLKE 342
Query: 188 ESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMK 223
+ V+PG G + ++RI++A E + RM+
Sbjct: 343 ARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRME 380
>pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From
Pyrococcus Horikoshii Ot3
pdb|1DJU|B Chain B, Crystal Structure Of Aromatic Aminotransferase From
Pyrococcus Horikoshii Ot3
Length = 388
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 92/218 (42%), Gaps = 37/218 (16%)
Query: 12 IMVIADEVYGHLVFGNT-HFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGI 70
++VI+DEVY H ++ + H+ + G +T+ SK + + GWRLG++ P+ I
Sbjct: 193 LIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAA--PSWI 250
Query: 71 LQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILRE---A 127
++ RM + + + + T +E + + ++ +E
Sbjct: 251 IE--------------RMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRR 296
Query: 128 ADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAKE 187
+ RL E+ T KP+G+ F ++ D L +S L + KE
Sbjct: 297 RKLVWKRLNEMGLPTV--KPKGA-FYIFPRIRDTGLTSKKFSEL------------MLKE 341
Query: 188 ESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMK 223
+ V+PG G + ++RI++A E + RM+
Sbjct: 342 ARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMERME 379
>pdb|1U08|A Chain A, Crystal Structure And Reactivity Of Ybdl From Escherichia
Coli Identify A Methionine Aminotransferase Function.
pdb|1U08|B Chain B, Crystal Structure And Reactivity Of Ybdl From Escherichia
Coli Identify A Methionine Aminotransferase Function
Length = 386
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 90/224 (40%), Gaps = 48/224 (21%)
Query: 12 IMVIADEVYGHLVFGNTHFVPMGVFGSIVP-VLTLGSISKRWIVPGWRLGWLVTSDPNGI 70
I VI+DEVY H+ F + + + + S K + + GW++G+ V P
Sbjct: 197 IFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAP--- 253
Query: 71 LQDLGVAFFHSISLNMR-MDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILREAAD 129
IS +R + YL SV T + + E E + + D R+ D
Sbjct: 254 -----------ISAEIRKVHQYLTF--SVNTPAQLALADMLRAEPEHYLALPDFYRQKRD 300
Query: 130 ICCDRLKE-----IPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKL 184
I + L E +PC EG+ F++ ++YS + ++ D EF L
Sbjct: 301 ILVNALNESRLEILPC-------EGTYFLL-----------VDYSAVSTLD-DVEFCQWL 341
Query: 185 AKEESIIVLPGITVGLKD-----WLRITFAVEPSAFEIGLGRMK 223
+E + +P ++V D +R+ FA + S R++
Sbjct: 342 TQEHGVAAIP-LSVFCADPFPHKLIRLCFAKKESTLLAAAERLR 384
>pdb|1O4S|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1255)
From Thermotoga Maritima At 1.90 A Resolution
pdb|1O4S|B Chain B, Crystal Structure Of Aspartate Aminotransferase (Tm1255)
From Thermotoga Maritima At 1.90 A Resolution
Length = 389
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/219 (20%), Positives = 87/219 (39%), Gaps = 36/219 (16%)
Query: 7 TKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD 66
KK +I+DEVY LV+ + + V ++ + SK + GWR+G+L++S+
Sbjct: 203 AKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSE 262
Query: 67 PNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILRE 126
+ + H+ S + Y L K E S + +E
Sbjct: 263 K--VATAVSKIQSHTTSCINTVAQYAAL----------------KALEVDNSYMVQTFKE 304
Query: 127 AADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLAK 186
+ +RLK++ +PEG+ ++ + D D +F +L +
Sbjct: 305 RKNFVVERLKKMGVKFV--EPEGAFYLFFKVRGD----------------DVKFCERLLE 346
Query: 187 EESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAF 225
E+ + ++PG ++R++FA L R++ F
Sbjct: 347 EKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDF 385
>pdb|3OP7|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase
(Zp_03625122.1) From Streptococcus Suis 89-1591 At 1.70
A Resolution
pdb|3P6K|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase
(Zp_03625122.1) From Streptococcus Suis 89-1591 At 2.07
A Resolution
pdb|3P6K|B Chain B, Crystal Structure Of A Plp-Dependent Aminotransferase
(Zp_03625122.1) From Streptococcus Suis 89-1591 At 2.07
A Resolution
Length = 375
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 94/234 (40%), Gaps = 44/234 (18%)
Query: 5 ETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPV----LTLGSISKRWIVPGWRLG 60
E ++G +++DEVY F + V SI+ V + + S+S + +PG R+G
Sbjct: 181 EIASEVGAYILSDEVY-------RSFSELDV-PSIIEVYDKGIAVNSLSXTYSLPGIRIG 232
Query: 61 WLVTSDPNGILQDLGVAFFHSISLNMR-MDDYLLLSESVYTTVGAVPQILEKTEEEFFSK 119
W VA H ++ +R DY + V+ + V Q+ +E +
Sbjct: 233 W--------------VAANHQVTDILRDYRDYTXICAGVFDDL--VAQLALAHYQEILER 276
Query: 120 ITDILREAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTE 179
IL E I ++E P ++ + ++ ++ + +
Sbjct: 277 NRHILEENLAILDQWIEEEPLVSYIR---------------PAVVSTSFVKIAVDXPXED 321
Query: 180 FALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAKKQ 233
F L+L +E ++++PG ++R+ FA E GL ++ F R K+
Sbjct: 322 FCLQLLQEHGVLLVPGNRFERDGYVRLGFACEQETLIKGLEKLSQFLRRFDKEN 375
>pdb|3B46|A Chain A, Crystal Structure Of Bna3p, A Putative Kynurenine
Aminotransferase From Saccharomyces Cerevisiae
pdb|3B46|B Chain B, Crystal Structure Of Bna3p, A Putative Kynurenine
Aminotransferase From Saccharomyces Cerevisiae
Length = 447
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 9 KLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTL--GSISKRWIVPGWRLGWLVT 64
K +++I+DEVY HL F ++ F + + LTL GS + GWR+GW+++
Sbjct: 232 KHNVVIISDEVYEHLYFTDS-FTRIATLSPEIGQLTLTVGSAGXSFAATGWRIGWVLS 288
>pdb|2O0R|A Chain A, The Three-Dimensional Structure Of
N-Succinyldiaminopimelate Aminotransferase From
Mycobacterium Tuberculosis
pdb|2O0R|B Chain B, The Three-Dimensional Structure Of
N-Succinyldiaminopimelate Aminotransferase From
Mycobacterium Tuberculosis
Length = 411
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 12 IMVIADEVYGHLVFGNTHFVPMGVF-GSIVPVLTLGSISKRWIVPGWRLGW 61
++VI DEVY HLVF + +P+ F G +T+ S + + GW++GW
Sbjct: 194 LVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAXMFNCTGWKIGW 244
>pdb|1YIY|A Chain A, Aedes Aegypti Kynurenine Aminotransferase
pdb|1YIY|B Chain B, Aedes Aegypti Kynurenine Aminotransferase
pdb|2R5C|B Chain B, Aedes Kynurenine Aminotransferase In Complex With Cysteine
pdb|2R5E|A Chain A, Aedes Kynurenine Aminotransferase In Complex With
Glutamine
pdb|2R5E|B Chain B, Aedes Kynurenine Aminotransferase In Complex With
Glutamine
Length = 429
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 31/158 (19%)
Query: 8 KKLGIMVIADEVYGHLVFGN-THFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD 66
KK ++ ++DEVY H+VF H + G +T+GS K + + GW++GW
Sbjct: 212 KKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAY--G 269
Query: 67 PNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILE----------KTEEEF 116
P +L++L ++ VYT + + + K+ E +
Sbjct: 270 PEALLKNL----------------QMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECY 313
Query: 117 FSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVM 154
F+ I+ L D L E+ P P+G F++
Sbjct: 314 FNSISGELMAKRDYMASFLAEVG--MNPTVPQGGYFMV 349
>pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|B Chain B, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|C Chain C, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|D Chain D, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
Length = 385
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 14 VIADEVYGHLVFGNTHFVPMGVFGSIVP--VLTLGSISKRWIVPGWRLGW 61
+++DE+Y HL++ HF P G + P LT+ +K + + GWR+G+
Sbjct: 200 LVSDEIYEHLLYEGEHFSP----GRVAPEHTLTVNGAAKAFAMTGWRIGY 245
>pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single
Mutant 1
pdb|1B5O|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Single
Mutant 1
Length = 385
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 14 VIADEVYGHLVFGNTHFVPMGVFGSIVP--VLTLGSISKRWIVPGWRLGW 61
+++DE+Y HL++ HF P G + P LT+ +K + + GWR+G+
Sbjct: 200 LVSDEIYEHLLYEGEHFSP----GRVAPEHTLTVNGAAKAFAMTGWRIGY 245
>pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1 Complexed With Aspartate
pdb|1GCK|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1 Complexed With Aspartate
pdb|1B5P|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1
pdb|1B5P|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1
Length = 385
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 14 VIADEVYGHLVFGNTHFVPMGVFGSIVP--VLTLGSISKRWIVPGWRLGW 61
+++DE+Y HL++ HF P G + P LT+ +K + + GWR+G+
Sbjct: 200 LVSDEIYEHLLYEGEHFSP----GRVAPEHTLTVNGAAKAFAMTGWRIGY 245
>pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|E Chain E, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|F Chain F, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|G Chain G, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|H Chain H, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC4|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|5BJ4|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2
pdb|5BJ4|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2
Length = 385
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 14 VIADEVYGHLVFGNTHFVPMGVFGSIVP--VLTLGSISKRWIVPGWRLGW 61
+++DE+Y HL++ HF P G + P LT+ +K + + GWR+G+
Sbjct: 200 LVSDEIYEHLLYEGEHFSP----GRVAPEHTLTVNGAAKAFAMTGWRIGY 245
>pdb|5BJ3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
pdb|5BJ3|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
pdb|5BJ3|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
pdb|5BJ3|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
Length = 385
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 14 VIADEVYGHLVFGNTHFVPMGVFGSIVP--VLTLGSISKRWIVPGWRLGW 61
+++DE+Y HL++ HF P G + P LT+ +K + + GWR+G+
Sbjct: 200 LVSDEIYEHLLYEGEHFSP----GRVAPEHTLTVNGAAKAFAMTGWRIGY 245
>pdb|1W7N|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
In Pmp Form
Length = 422
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 67/148 (45%), Gaps = 11/148 (7%)
Query: 8 KKLGIMVIADEVYGHLVF-GNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD 66
++ ++ I DEVY +V+ G+ H + G LT+GS K + GW++GW++
Sbjct: 204 QQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVL--G 261
Query: 67 PNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILRE 126
P+ I++ L +S+ + ++ES Q+L + +F + ++
Sbjct: 262 PDHIMKHLRTVHQNSV-FHCPTQSQAAVAESFERE-----QLLFRQPSSYFVQFPQAMQR 315
Query: 127 AADICCDRLKEIPCITCPKKPEGSMFVM 154
D L+ + P P+GS F++
Sbjct: 316 CRDHMIRSLQSVGL--KPLIPQGSYFLI 341
>pdb|3E2Z|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii
In Complex With Kynurenine
pdb|3E2Y|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii
In Complex With Glutamine
pdb|3E2Y|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii
In Complex With Glutamine
Length = 410
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 9 KLGIMVIADEVYGHLVF-GNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLV 63
K + I+DEVY LV+ G+TH + G +T+GS K + V GW+LGW +
Sbjct: 198 KHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKLGWSI 253
>pdb|1WST|A Chain A, Crystal Structure Of Multiple Substrate Aminotransferase
(Msat) From Thermococcus Profundus
Length = 417
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 90/214 (42%), Gaps = 34/214 (15%)
Query: 5 ETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVT 64
E + +++ D Y L + P+ F V+ LG+ SK + PG+R+GW V
Sbjct: 210 ELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSK-ILAPGFRIGW-VA 267
Query: 65 SDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDIL 124
+ P+ +++ + +A S+++ + + Y G + +E KI +
Sbjct: 268 AHPH-LIRKMEIA---KQSIDLCTNTFGQAIAWKYVENGYL--------DEHIPKIIEFY 315
Query: 125 REAADICCDRLKE-IPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALK 183
+ D + L+E +P KPEG MFV +L EGI DT+ ++
Sbjct: 316 KPRRDAMLEALEEYMPEGVEWTKPEGGMFV-------------RVTLPEGI--DTKLMME 360
Query: 184 LAKEESIIVLPG----ITVGLKDWLRITFAVEPS 213
A + + +PG + K+ +R+ F P
Sbjct: 361 RAVAKGVAYVPGEAFFVHRDKKNTMRLNFTYVPE 394
>pdb|1YIZ|A Chain A, Aedes Aegypti Kynurenine Aminotrasferase
pdb|1YIZ|B Chain B, Aedes Aegypti Kynurenine Aminotrasferase
pdb|2R5C|A Chain A, Aedes Kynurenine Aminotransferase In Complex With Cysteine
Length = 429
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 64/158 (40%), Gaps = 31/158 (19%)
Query: 8 KKLGIMVIADEVYGHLVFGN-THFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD 66
KK ++ ++DEVY H+VF H + G +T+GS + + GW++GW
Sbjct: 212 KKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGXTFSLTGWKIGWAY--G 269
Query: 67 PNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILE----------KTEEEF 116
P +L++L ++ VYT + + + K+ E +
Sbjct: 270 PEALLKNLQ----------------MVHQNCVYTCATPIQEAIAVGFETELKRLKSPECY 313
Query: 117 FSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVM 154
F+ I+ L D L E+ P P+G F++
Sbjct: 314 FNSISGELMAKRDYMASFLAEVG--MNPTVPQGGYFMV 349
>pdb|1LKC|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From Salmonella Enterica
pdb|1LC5|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From S. Enterica In Its Apo State
pdb|1LC7|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From S. Enterica Complexed With A
Substrate
pdb|1LC8|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From S. Enterica Complexed With Its
Reaction Intermediate
Length = 364
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 2 CIEETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGW 61
I + K L I +I DE + + T F+P + L S++K + +PG RLG+
Sbjct: 170 AIADRCKSLNINLILDEAFIDFIPHETGFIP--ALKDNPHIWVLRSLTKFYAIPGLRLGY 227
Query: 62 LVTSD 66
LV SD
Sbjct: 228 LVNSD 232
>pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus
pdb|1BJW|B Chain B, Aspartate Aminotransferase From Thermus Thermophilus
Length = 382
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Query: 14 VIADEVYGHLVFGNTHFVPMGVFGSIVP--VLTLGSISKRWIVPGWRLGW 61
+++DE+Y HL++ HF P G + P LT+ + + + GWR+G+
Sbjct: 200 LVSDEIYEHLLYEGEHFSP----GRVAPEHTLTVNGAAXAFAMTGWRIGY 245
>pdb|1W7L|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
pdb|1W7M|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
In Complex With L-Phe
Length = 422
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 66/148 (44%), Gaps = 11/148 (7%)
Query: 8 KKLGIMVIADEVYGHLVF-GNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD 66
++ ++ I DEVY +V+ G+ H + G LT+GS + GW++GW++
Sbjct: 204 QQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGXTFSATGWKVGWVL--G 261
Query: 67 PNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILRE 126
P+ I++ L +S+ + ++ES Q+L + +F + ++
Sbjct: 262 PDHIMKHLRTVHQNSV-FHCPTQSQAAVAESFERE-----QLLFRQPSSYFVQFPQAMQR 315
Query: 127 AADICCDRLKEIPCITCPKKPEGSMFVM 154
D L+ + P P+GS F++
Sbjct: 316 CRDHMIRSLQSVGL--KPLIPQGSYFLI 341
>pdb|3FVS|A Chain A, Human Kynurenine Aminotransferase I In Complex With
Glycerol
pdb|3FVS|B Chain B, Human Kynurenine Aminotransferase I In Complex With
Glycerol
pdb|3FVU|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
In Complex With Indole-3-acetic Acid
pdb|3FVU|B Chain B, Crystal Structure Of Human Kynurenine Aminotransferase I
In Complex With Indole-3-acetic Acid
pdb|3FVX|A Chain A, Human Kynurenine Aminotransferase I In Complex With Tris
pdb|3FVX|B Chain B, Human Kynurenine Aminotransferase I In Complex With Tris
Length = 422
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 66/148 (44%), Gaps = 11/148 (7%)
Query: 8 KKLGIMVIADEVYGHLVF-GNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD 66
++ ++ I DEVY +V+ G+ H + G LT+GS + GW++GW++
Sbjct: 204 QQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGXTFSATGWKVGWVL--G 261
Query: 67 PNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILRE 126
P+ I++ L +S+ + ++ES Q+L + +F + ++
Sbjct: 262 PDHIMKHLRTVHQNSV-FHCPTQSQAAVAESFERE-----QLLFRQPSSYFVQFPQAMQR 315
Query: 127 AADICCDRLKEIPCITCPKKPEGSMFVM 154
D L+ + P P+GS F++
Sbjct: 316 CRDHMIRSLQSVGL--KPIIPQGSYFLI 341
>pdb|3E2F|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase
Iii, Plp-Bound Form
pdb|3E2F|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase
Iii, Plp-Bound Form
pdb|3E2Z|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii
In Complex With Kynurenine
pdb|2ZJG|A Chain A, Crystal Structural Of Mouse Kynurenine Aminotransferase
Iii
pdb|2ZJG|B Chain B, Crystal Structural Of Mouse Kynurenine Aminotransferase
Iii
Length = 410
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 9 KLGIMVIADEVYGHLVF-GNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLV 63
K + I+DEVY LV+ G+TH + G +T+GS + V GW+LGW +
Sbjct: 198 KHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGXTFSVTGWKLGWSI 253
>pdb|1X0M|A Chain A, A Human Kynurenine Aminotransferase Ii Homologue From
Pyrococcus Horikoshii Ot3
Length = 403
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 15/150 (10%)
Query: 5 ETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVT 64
E + +V+ D+ YG L + + + V+ LG+ SK + PG+R+GW+V
Sbjct: 199 ELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSK-ILAPGFRIGWMV- 256
Query: 65 SDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDIL 124
DP GI++ + +A D L +V+ V A + E+ +I
Sbjct: 257 GDP-GIIRKMEIA-------KQSTD----LCTNVFGQVVAWRYVDGGYLEKHIPEIRKFY 304
Query: 125 REAADICCDRLKE-IPCITCPKKPEGSMFV 153
+ D + L+E +P KPEG MF+
Sbjct: 305 KPRRDAMLEALEEFMPEGVKWTKPEGGMFI 334
>pdb|3AOV|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Plp
pdb|3AOV|C Chain C, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Plp
pdb|3AOW|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Akg
pdb|3AOW|C Chain C, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Akg
pdb|3ATH|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Four Akgs As Substrates
And Allosteric Effectors
pdb|3ATH|C Chain C, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Four Akgs As Substrates
And Allosteric Effectors
pdb|3AV7|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Pmp, Kyn As Substrates
And Kya As Products
pdb|3AV7|C Chain C, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Pmp, Kyn As Substrates
And Kya As Products
Length = 448
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 15/150 (10%)
Query: 5 ETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVT 64
E + +V+ D+ YG L + + + V+ LG+ SK + PG+R+GW+V
Sbjct: 244 ELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSK-ILAPGFRIGWMV- 301
Query: 65 SDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDIL 124
DP GI++ + +A D L +V+ V A + E+ +I
Sbjct: 302 GDP-GIIRKMEIA-------KQSTD----LCTNVFGQVVAWRYVDGGYLEKHIPEIRKFY 349
Query: 125 REAADICCDRLKE-IPCITCPKKPEGSMFV 153
+ D + L+E +P KPEG MF+
Sbjct: 350 KPRRDAMLEALEEFMPEGVKWTKPEGGMFI 379
>pdb|1V2D|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase
pdb|1V2E|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase
Complex With A-Keto-G-Methylthiobutyrate
pdb|1V2E|B Chain B, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase
Complex With A-Keto-G-Methylthiobutyrate
pdb|1V2F|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase
Complex With 3-Phenylpropionate
pdb|1V2F|B Chain B, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase
Complex With 3-Phenylpropionate
Length = 381
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 56/158 (35%), Gaps = 27/158 (17%)
Query: 2 CIEETTKKLGIMVIADEVYGHLVFGNT-----HFVPMGVFGSIVPVLTLGSISKRWIVPG 56
I + + +I+DEVY L +G F P F T+GS KR G
Sbjct: 176 AIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTF-------TVGSAGKRLEATG 228
Query: 57 WRLGWLVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEF 116
+R+GW+V P + L M + S G + E F
Sbjct: 229 YRVGWIV--GPKEFMPRLAG-----------MRQWTSFSAPTPLQAGVAEALKLARREGF 275
Query: 117 FSKITDILREAADICCDRLKEIPCITCPKKPEGSMFVM 154
+ + + R D+ L+ + PEG+ F+M
Sbjct: 276 YEALREGYRRRRDLLAGGLRAMGLRVY--VPEGTYFLM 311
>pdb|3ELE|A Chain A, Crystal Structure Of Amino Transferase (rer070207001803)
From Eubacterium Rectale At 2.10 A Resolution
pdb|3ELE|B Chain B, Crystal Structure Of Amino Transferase (rer070207001803)
From Eubacterium Rectale At 2.10 A Resolution
pdb|3ELE|C Chain C, Crystal Structure Of Amino Transferase (rer070207001803)
From Eubacterium Rectale At 2.10 A Resolution
pdb|3ELE|D Chain D, Crystal Structure Of Amino Transferase (rer070207001803)
From Eubacterium Rectale At 2.10 A Resolution
Length = 398
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 93/237 (39%), Gaps = 47/237 (19%)
Query: 3 IEETTKKLG--IMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLG 60
+E+ +K++G I +IADE Y +V+ VP V L S SK +PG R+G
Sbjct: 201 LEKKSKEIGRPIFIIADEPYREIVYDGIK-VPF-VTKYYDNTLVCYSYSKSLSLPGERIG 258
Query: 61 WLVTSDPNGILQDLGVAFFHSISLNMRMDDYL----LLSESVYTTVGAVPQILEKTEEEF 116
+++ D +L + ++ R Y+ L + + GA I
Sbjct: 259 YVLVPDEVYDKAEL----YAAVCGAGRALGYVCAPSLFQKXIVKCQGATGDI-------- 306
Query: 117 FSKITDILREAADICCDRLKEI--PCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGI 174
+ +E D+ + L I C KP+G+ Y ++ +
Sbjct: 307 -----NAYKENRDLLYEGLTRIGYHCF----KPDGAF----------------YXFVKAL 341
Query: 175 NSDTEFALKLAKEESIIVLPGITVGLKDWLRITFAVEPSAFEIGLGRMKAFYYRHAK 231
D+ + AKEE ++++ G W+RI++ V+ + + Y ++ K
Sbjct: 342 EDDSNAFCEKAKEEDVLIVAADGFGCPGWVRISYCVDREXIKHSXPAFEKIYKKYNK 398
>pdb|2ZC0|A Chain A, Crystal Structure Of An Archaeal Alanine:glyoxylate
Aminotransferase
pdb|2ZC0|B Chain B, Crystal Structure Of An Archaeal Alanine:glyoxylate
Aminotransferase
pdb|2ZC0|C Chain C, Crystal Structure Of An Archaeal Alanine:glyoxylate
Aminotransferase
pdb|2ZC0|D Chain D, Crystal Structure Of An Archaeal Alanine:glyoxylate
Aminotransferase
Length = 407
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 88/225 (39%), Gaps = 42/225 (18%)
Query: 5 ETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVT 64
E K +++I D Y + + VP+ + V+ G++SK + G+R+GW++
Sbjct: 202 EIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSK-VLGTGFRIGWIIA 260
Query: 65 SDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSK--ITD 122
+ + + D+ + S Y LE + +F K +
Sbjct: 261 EG----------EILKKVLMQKQPIDFCAPAISQYIA-------LEYLKRGYFEKYHLEG 303
Query: 123 IL---REAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTE 179
L +E DI L+ KP MFVM+ L EG +
Sbjct: 304 ALLGYKEKRDIMLKALENHLPNAEFTKPIAGMFVMFF-------------LPEGADG-IS 349
Query: 180 FALKLAKEESIIVLPG----ITVGLKDWLRITFAVEPSAFEIGLG 220
FA +L + E ++V+PG K+ +R+ F+ PS EI +G
Sbjct: 350 FANELMEREGVVVVPGKPFYTDESGKNAIRLNFS-RPSKEEIPIG 393
>pdb|2X5D|A Chain A, Crystal Structure Of A Probable Aminotransferase From
Pseudomonas Aeruginosa
pdb|2X5D|B Chain B, Crystal Structure Of A Probable Aminotransferase From
Pseudomonas Aeruginosa
pdb|2X5D|C Chain C, Crystal Structure Of A Probable Aminotransferase From
Pseudomonas Aeruginosa
pdb|2X5D|D Chain D, Crystal Structure Of A Probable Aminotransferase From
Pseudomonas Aeruginosa
Length = 412
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 81/194 (41%), Gaps = 29/194 (14%)
Query: 7 TKKLGIMVIADEVYGHLVF-GNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTS 65
K+ +MV+ D Y +V+ G M V G+ + ++SK + + GWR+G++V
Sbjct: 201 AKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMV-G 259
Query: 66 DPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKITDILR 125
+P + + +H DY + + A+ + +++ I +
Sbjct: 260 NPELVSALARIKSYH---------DYGTFTPLQVAAIAAL-----EGDQQCVRDIARQYQ 305
Query: 126 EAADICCDRLKEIPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEFALKLA 185
+ D+ L+E + + P+ SM+V + Y+ L + EFA KL
Sbjct: 306 QRRDVLVKGLREAGWMV--ENPKASMYVW-------AKIPEPYAHLGSL----EFAKKLL 352
Query: 186 KEESIIVLPGITVG 199
++ + V PGI G
Sbjct: 353 QDAKVSVSPGIGFG 366
>pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|B Chain B, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|C Chain C, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|D Chain D, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|E Chain E, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|F Chain F, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
Length = 409
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 28/154 (18%)
Query: 5 ETTKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVP-----VLTLGSISKRWIVPGWRL 59
E ++ G+ +I DEVY +VF G F S + V+ + S+S ++ G R+
Sbjct: 201 EIAERHGLFLIVDEVYSEIVF-------RGEFASALSIESDKVVVIDSVSXKFSACGARV 253
Query: 60 GWLVTSDPNGILQDLGVAFFHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSK 119
G L+T + I H+ L L+ + +G+V L ++ FF
Sbjct: 254 GCLITRNEELIS--------HAXKLAQGR-----LAPPLLEQIGSVG--LLNLDDSFFDF 298
Query: 120 ITDILREAADICCDRLKEIPCITCPKKPEGSMFV 153
+ + RE + +L+E + KP G+ ++
Sbjct: 299 VRETYRERVETVLKKLEE-HGLKRFTKPSGAFYI 331
>pdb|3FDB|A Chain A, Crystal Structure Of A Putative Plp-Dependent
Beta-Cystathionase (Aecd, Dip1736) From Corynebacterium
Diphtheriae At 1.99 A Resolution
Length = 377
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 7 TKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPV-LTLGSISKRWIVPGWRLGWLVTS 65
+ V+ DE++ LVF H V GV + V +T+ + S W + G + ++ S
Sbjct: 179 AHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSXAWNIAGLKCAQIIFS 238
Query: 66 DPN 68
+P+
Sbjct: 239 NPS 241
>pdb|2DOU|A Chain A, Probable N-Succinyldiaminopimelate Aminotransferase
(Ttha0342) From Thermus Thermophilus Hb8
pdb|2DOU|B Chain B, Probable N-Succinyldiaminopimelate Aminotransferase
(Ttha0342) From Thermus Thermophilus Hb8
Length = 376
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 7 TKKLGIMVIADEVYGHLVFGNTHFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD 66
+K G+ +I D Y V+ P+ + G+ V+ L S+SK + + G+RLG+ + S+
Sbjct: 187 ARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGSE 246
>pdb|3LUN|A Chain A, Structure Of Ulilysin Mutant M290c
pdb|3LUN|B Chain B, Structure Of Ulilysin Mutant M290c
Length = 262
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 139 PCITCPKKPEGSMFVMYCGS-EDKCLLKLNYSLLEGINS 176
P ++C P G MF+ YC +DKC++ +N+
Sbjct: 213 PHVSCSNGPNGDMFMNYCDYVDDKCMVMFTQGQATRVNA 251
>pdb|3IKM|A Chain A, Crystal Structure Of Human Mitochondrial Dna Polymerase
Holoenzyme
pdb|3IKM|D Chain D, Crystal Structure Of Human Mitochondrial Dna Polymerase
Holoenzyme
Length = 1172
Score = 29.3 bits (64), Expect = 1.9, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Query: 34 GVFGSIVP-VLTLGSISKRWIVPGW 57
G++G+I+P V+T G+I++R + P W
Sbjct: 768 GLYGAILPQVVTAGTITRRAVEPTW 792
>pdb|3T32|A Chain A, Crystal Structure Of A Putative C-S Lyase From Bacillus
Anthracis
pdb|3T32|B Chain B, Crystal Structure Of A Putative C-S Lyase From Bacillus
Anthracis
Length = 383
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 91/225 (40%), Gaps = 42/225 (18%)
Query: 9 KLGIMVIADEVYGHLVFGNTHFVPMGVFGS--IVPVLTLGSISKRWIVPGWRLGWLVTSD 66
K ++V+ADE++ +++ + P +T + S + + G + ++
Sbjct: 187 KYNVIVVADEIHSDIIYADHTHTPFASLSEELAARTITCXAPSXTFNIAGLQASIIII-- 244
Query: 67 PNGILQDLGVAF-----FHSISLNMRMDDYLLLSESVYTTVGAVPQILEKTEEEFFSKIT 121
PN L+ + FH +++ +S YT ++ ++I
Sbjct: 245 PNEKLRQAFTSIQYRQGFHGLNIFA-----YTAXQSAYTECN-----------DWLNEIR 288
Query: 122 DILREAADICCDRLKE-IPCITCPKKPEGSMFVMYCGSEDKCLLKLNYSLLEGINSDTEF 180
+ + A C+ +K+ IP ++ KPEGS LL ++ S L ++ D
Sbjct: 289 FYIEDNAKFACEYIKDHIPTLSV-XKPEGSF-----------LLWIDCSAL-NLSQDERT 335
Query: 181 ALKLAKEESIIVLPGITVGL--KDWLRITFAVEPSAFEIGLGRMK 223
L L ++ IIV PG GL ++ + I S E L R++
Sbjct: 336 KL-LEEKGKIIVEPGEKYGLGGEEHIGINIGCPRSVLEEILNRLR 379
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,863,029
Number of Sequences: 62578
Number of extensions: 276182
Number of successful extensions: 649
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 608
Number of HSP's gapped (non-prelim): 43
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)