BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047985
(930 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 223 bits (567), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 234/786 (29%), Positives = 345/786 (43%), Gaps = 164/786 (20%)
Query: 57 SWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEII 116
S G +C + + LDLS + L G + + +SL L++L+++ N D
Sbjct: 92 SVSGFKC---SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--------- 139
Query: 117 XXXXXXXXXXXXAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNL 176
F G++ S L+L+ L LDLS NS + L+D L
Sbjct: 140 --------------FPGKV-SGGLKLNSLEVLDLSANSISGANVVGWV----LSDGCGEL 180
Query: 177 KELVLGDVTISSPIPHNXXXXXXXXXXXXXGCDLRGRIPSSLGNITRLIHL---DLSFNK 233
K L + IS + +++R ++L D+S N
Sbjct: 181 KHLAISGNKISGDV-----------------------------DVSRCVNLEFLDVSSNN 211
Query: 234 LSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNL 293
S +P F+G +L+ LD+ N LSG+ +I L+ +++S N+F+G +P L
Sbjct: 212 FSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PL 268
Query: 294 TQLHWLSLASNDFSGELPASF-GNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLN 352
L +LSLA N F+GE+P G +L LD+ F G +P + + L L S N
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328
Query: 353 NFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFL 412
NFSG++ +D L+ + L L LS N S E+P+ L
Sbjct: 329 NFSGELPMDT-LLKMRGLKVLDLSFNEFS------------------------GELPESL 363
Query: 413 KN-QHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHP-NTVNYL-VS 469
N L LDL+SN +G + L Q+P NT+ L +
Sbjct: 364 TNLSASLLTLDLSSNNFSGPI---------------------LPNLCQNPKNTLQELYLQ 402
Query: 470 NNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPD 529
NN TG+IP + N S L SL LS+N LSG +P LG+ S L L L N G IP
Sbjct: 403 NNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQ 460
Query: 530 NLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLI 589
L+ L+ + L N L G IP L+NC+NL ++ L +N++ P W+G L +L +L
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520
Query: 590 LKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAF------------------- 630
L +N F G I DC L +DL+ N F G +P+ F
Sbjct: 521 LSNNSFSGNIPAELGDC--RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578
Query: 631 -------QCWNA-----MKVVNASELRYMQEVIPFNEGNGIYD--YSLTMSNKGQMMSYK 676
+C A + + + +L + P N + +Y S T N G MM
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM--- 635
Query: 677 KIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLS 736
+ +S N G IP I ++ L IL+L N + G IP +G+L L LDLS
Sbjct: 636 -------FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688
Query: 737 NNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRPLSSE 796
+N+ G+IPQ + LT L ++S+N+ +GPIP+ QF TF F N GLCG PL
Sbjct: 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL-PR 747
Query: 797 CEISEA 802
C+ S A
Sbjct: 748 CDPSNA 753
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 174/595 (29%), Positives = 265/595 (44%), Gaps = 101/595 (16%)
Query: 50 GNNIDCCSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGS 109
N+I + G ++ G + L +S + + G ++ S + V+LE+LD++ N+F S
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS----RCVNLEFLDVSSNNF--S 213
Query: 110 EIPPEIIXXXXXXXXXXXXAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNL 169
P + SG I ++L L++S N + P+ P L
Sbjct: 214 TGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI----PPL--- 266
Query: 170 ADKLTNLKELVLGDVTISSPIPHNXXXXXXXXXXXXXGCDLRGR-----IPSSLGNITRL 224
L +L+ L L + + IP G DL G +P G+ + L
Sbjct: 267 --PLKSLQYLSLAENKFTGEIPD----FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 320
Query: 225 IHLDLSFNKLSDELP--TFIGTLGSLKELDLLQNNLSGELPNSIGNL-ASLEQVDLSLNR 281
L LS N S ELP T + G LK LDL N SGELP S+ NL ASL +DLS N
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRG-LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379
Query: 282 FLGKVPSSLGNLTQ-----LHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPS 336
F G + L NL Q L L L +N F+G++P + N L +L + SG IPS
Sbjct: 380 FSGPI---LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436
Query: 337 SLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLS-LLTKATSNTTSHRF 395
SL +L+ L L LN G++ ++ V K L L L N L+ + SN T+ +
Sbjct: 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYV--KTLETLILDFNDLTGEIPSGLSNCTNLNW 494
Query: 396 RAVSLCSCDLT-EIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFL 454
+SL + LT EIPK++ +L +L L++N +G +P L D ++ L+L+ N
Sbjct: 495 --ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD--CRSLIWLDLNTNLF 550
Query: 455 TG------FDQHPNTVNYLVSN--------------------------------NSLTGE 476
G F Q ++ N L+
Sbjct: 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610
Query: 477 IPSWICNLSNRLES---------------LDLSYNNLSGLLPQCLGNFSDWLSILDLQHN 521
P CN+++R+ LD+SYN LSG +P+ +G+ +L IL+L HN
Sbjct: 611 NP---CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP-YLFILNLGHN 666
Query: 522 KFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFP 576
SG+IPD + L ++DLS N L GRIP++++ + L +DL +N + P
Sbjct: 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 101/339 (29%), Positives = 164/339 (48%), Gaps = 46/339 (13%)
Query: 467 LVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLP--QCLGNFSDWLSILDLQHNK-- 522
+SN+ + G + + C+ S L SLDLS N+LSG + LG+ S L L++ N
Sbjct: 83 FLSNSHINGSVSGFKCSAS--LTSLDLSRNSLSGPVTTLTSLGSCSG-LKFLNVSSNTLD 139
Query: 523 FSGTIPDNLLKGNILKVIDLSDNLLQG-----------------------RIPR--SLAN 557
F G + LK N L+V+DLS N + G +I ++
Sbjct: 140 FPGKVSGG-LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSR 198
Query: 558 CSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLS 617
C NLEFLD+ N P +LG L L + NK G + C +L+++++S
Sbjct: 199 CVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTC--TELKLLNIS 255
Query: 618 KNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNK---GQMMS 674
N+F G +P + + +++ ++ +E ++ E+ F G L +S G +
Sbjct: 256 SNQFVGPIPPLPLK---SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312
Query: 675 YKKIPDILTAVILSSNRFDGEIPT-SISNLKGLQILSLADNSLHGHIPSCLGNLT-DLES 732
+ +L ++ LSSN F GE+P ++ ++GL++L L+ N G +P L NL+ L +
Sbjct: 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372
Query: 733 LDLSNNRFSGQIPQQLVE--LTFLEFFNVSDNHFTGPIP 769
LDLS+N FSG I L + L+ + +N FTG IP
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 222 bits (566), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 236/799 (29%), Positives = 349/799 (43%), Gaps = 168/799 (21%)
Query: 57 SWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEII 116
S G +C + + LDLS + L G + + +SL L++L+++ N D
Sbjct: 89 SVSGFKC---SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--------- 136
Query: 117 XXXXXXXXXXXXAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNL 176
F G++ S L+L+ L LDLS NS + L+D L
Sbjct: 137 --------------FPGKV-SGGLKLNSLEVLDLSANSISGANVVGWV----LSDGCGEL 177
Query: 177 KELVLGDVTISSPIPHNXXXXXXXXXXXXXGCDLRGRIPSSLGNITRLIHL---DLSFNK 233
K L + IS + +++R ++L D+S N
Sbjct: 178 KHLAISGNKISGDV-----------------------------DVSRCVNLEFLDVSSNN 208
Query: 234 LSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNL 293
S +P F+G +L+ LD+ N LSG+ +I L+ +++S N+F+G +P L
Sbjct: 209 FSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PL 265
Query: 294 TQLHWLSLASNDFSGELPASF-GNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLN 352
L +LSLA N F+GE+P G +L LD+ F G +P + + L L S N
Sbjct: 266 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 325
Query: 353 NFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFL 412
NFSG++ +D L+ + L L LS N S E+P+ L
Sbjct: 326 NFSGELPMDT-LLKMRGLKVLDLSFNEFS------------------------GELPESL 360
Query: 413 KN-QHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHP-NTVNYL-VS 469
N L LDL+SN +G + L Q+P NT+ L +
Sbjct: 361 TNLSASLLTLDLSSNNFSGPI---------------------LPNLCQNPKNTLQELYLQ 399
Query: 470 NNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPD 529
NN TG+IP + N S L SL LS+N LSG +P LG+ S L L L N G IP
Sbjct: 400 NNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQ 457
Query: 530 NLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLI 589
L+ L+ + L N L G IP L+NC+NL ++ L +N++ P W+G L +L +L
Sbjct: 458 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 517
Query: 590 LKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAF------------------- 630
L +N F G I DC L +DL+ N F G +P+ F
Sbjct: 518 LSNNSFSGNIPAELGDC--RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 575
Query: 631 -------QCWNA-----MKVVNASELRYMQEVIPFNEGNGIYD--YSLTMSNKGQMMSYK 676
+C A + + + +L + P N + +Y S T N G MM
Sbjct: 576 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM--- 632
Query: 677 KIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLS 736
+ +S N G IP I ++ L IL+L N + G IP +G+L L LDLS
Sbjct: 633 -------FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 685
Query: 737 NNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRPLSSE 796
+N+ G+IPQ + LT L ++S+N+ +GPIP+ QF TF F N GLCG PL
Sbjct: 686 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL-PR 744
Query: 797 CEISEAPTNEDQIEDSEES 815
C+ P+N D + S
Sbjct: 745 CD----PSNADGYAHHQRS 759
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 174/595 (29%), Positives = 265/595 (44%), Gaps = 101/595 (16%)
Query: 50 GNNIDCCSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGS 109
N+I + G ++ G + L +S + + G ++ S + V+LE+LD++ N+F S
Sbjct: 157 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS----RCVNLEFLDVSSNNF--S 210
Query: 110 EIPPEIIXXXXXXXXXXXXAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNL 169
P + SG I ++L L++S N + P+ P L
Sbjct: 211 TGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI----PPL--- 263
Query: 170 ADKLTNLKELVLGDVTISSPIPHNXXXXXXXXXXXXXGCDLRGR-----IPSSLGNITRL 224
L +L+ L L + + IP G DL G +P G+ + L
Sbjct: 264 --PLKSLQYLSLAENKFTGEIPD----FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 317
Query: 225 IHLDLSFNKLSDELP--TFIGTLGSLKELDLLQNNLSGELPNSIGNL-ASLEQVDLSLNR 281
L LS N S ELP T + G LK LDL N SGELP S+ NL ASL +DLS N
Sbjct: 318 ESLALSSNNFSGELPMDTLLKMRG-LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 376
Query: 282 FLGKVPSSLGNLTQ-----LHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPS 336
F G + L NL Q L L L +N F+G++P + N L +L + SG IPS
Sbjct: 377 FSGPI---LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 433
Query: 337 SLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLS-LLTKATSNTTSHRF 395
SL +L+ L L LN G++ ++ V K L L L N L+ + SN T+ +
Sbjct: 434 SLGSLSKLRDLKLWLNMLEGEIPQELMYV--KTLETLILDFNDLTGEIPSGLSNCTNLNW 491
Query: 396 RAVSLCSCDLT-EIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFL 454
+SL + LT EIPK++ +L +L L++N +G +P L D ++ L+L+ N
Sbjct: 492 --ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD--CRSLIWLDLNTNLF 547
Query: 455 TG------FDQHPNTVNYLVSN--------------------------------NSLTGE 476
G F Q ++ N L+
Sbjct: 548 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 607
Query: 477 IPSWICNLSNRLES---------------LDLSYNNLSGLLPQCLGNFSDWLSILDLQHN 521
P CN+++R+ LD+SYN LSG +P+ +G+ +L IL+L HN
Sbjct: 608 NP---CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP-YLFILNLGHN 663
Query: 522 KFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFP 576
SG+IPD + L ++DLS N L GRIP++++ + L +DL +N + P
Sbjct: 664 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 85.9 bits (211), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 101/339 (29%), Positives = 164/339 (48%), Gaps = 46/339 (13%)
Query: 467 LVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLP--QCLGNFSDWLSILDLQHNK-- 522
+SN+ + G + + C+ S L SLDLS N+LSG + LG+ S L L++ N
Sbjct: 80 FLSNSHINGSVSGFKCSAS--LTSLDLSRNSLSGPVTTLTSLGSCSG-LKFLNVSSNTLD 136
Query: 523 FSGTIPDNLLKGNILKVIDLSDNLLQG-----------------------RIPR--SLAN 557
F G + LK N L+V+DLS N + G +I ++
Sbjct: 137 FPGKVSGG-LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSR 195
Query: 558 CSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLS 617
C NLEFLD+ N P +LG L L + NK G + C +L+++++S
Sbjct: 196 CVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTC--TELKLLNIS 252
Query: 618 KNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNK---GQMMS 674
N+F G +P + + +++ ++ +E ++ E+ F G L +S G +
Sbjct: 253 SNQFVGPIPPLPLK---SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 309
Query: 675 YKKIPDILTAVILSSNRFDGEIPT-SISNLKGLQILSLADNSLHGHIPSCLGNLT-DLES 732
+ +L ++ LSSN F GE+P ++ ++GL++L L+ N G +P L NL+ L +
Sbjct: 310 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 369
Query: 733 LDLSNNRFSGQIPQQLVE--LTFLEFFNVSDNHFTGPIP 769
LDLS+N FSG I L + L+ + +N FTG IP
Sbjct: 370 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 408
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 94/320 (29%), Positives = 130/320 (40%), Gaps = 56/320 (17%)
Query: 506 LGN---FSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSD-NLLQGR-IPRSLANCSN 560
LGN S WL D + + G + D + + +DLS NL + IP SLAN
Sbjct: 18 LGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY 77
Query: 561 LEFLDLGD-NQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKN 619
L FL +G N + P + L L+ L + G I P L +D S N
Sbjct: 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI--PDFLSQIKTLVTLDFSYN 135
Query: 620 RFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMM-SYKKI 678
+G LP N + + +GN I G + SY
Sbjct: 136 ALSGTLPPSISSLPNLVGITF--------------DGNRI---------SGAIPDSYGSF 172
Query: 679 PDILTAVILSSNRFDGEIPTSISNL-----------------------KGLQILSLADNS 715
+ T++ +S NR G+IP + +NL K Q + LA NS
Sbjct: 173 SKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232
Query: 716 LHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFA 775
L + +G +L LDL NNR G +PQ L +L FL NVS N+ G IPQG
Sbjct: 233 LAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291
Query: 776 TFDKTSFDGNSGLCGRPLSS 795
FD +++ N LCG PL +
Sbjct: 292 RFDVSAYANNKCLCGSPLPA 311
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 93/320 (29%), Positives = 140/320 (43%), Gaps = 36/320 (11%)
Query: 5 LCHGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCC--SWDGVQ 62
LC+ ++ ALLQ K+ L TL +SW P DCC +W GV
Sbjct: 2 LCNPQDKQALLQIKKDL-----GNPTTL----------SSWLPTT----DCCNRTWLGVL 42
Query: 63 CNENTG--HVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLA-FNDFDGSEIPPEIIXXX 119
C+ +T V LDLS L SSL L +L +L + N+ G IPP I
Sbjct: 43 CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLT 101
Query: 120 XXXXXXXXXAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKEL 179
SG IP + ++ L LD S+N+ + PS+ +L NL +
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP---PSISSLP----NLVGI 154
Query: 180 VLGDVTISSPIPHNXXXXXXXXXXXXXGCD-LRGRIPSSLGNITRLIHLDLSFNKLSDEL 238
IS IP + + L G+IP + N+ L +DLS N L +
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDA 213
Query: 239 PTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHW 298
G+ + +++ L +N+L+ +L +G +L +DL NR G +P L L LH
Sbjct: 214 SVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272
Query: 299 LSLASNDFSGELPASFGNLR 318
L+++ N+ GE+P GNL+
Sbjct: 273 LNVSFNNLCGEIPQG-GNLQ 291
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 119/250 (47%), Gaps = 38/250 (15%)
Query: 262 LPNSIGNLASLEQVDLS-LNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSL 320
+P+S+ NL L + + +N +G +P ++ LTQLH+L + + SG +P +++L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 321 RTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRL 380
TLD SG +P S+S+L +L + F N SG + D + KL + +S NRL
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP-DSYGSFSKLFTSMTISRNRL 186
Query: 381 SLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPS 440
+ +IP N +L +DL+ N + G +L S
Sbjct: 187 T------------------------GKIPPTFANL-NLAFVDLSRNMLEGDA--SVLFGS 219
Query: 441 MQNFGHLNLSHNFL------TGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLS 494
+N ++L+ N L G ++ N ++ + NN + G +P + L L SL++S
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLD--LRNNRIYGTLPQGLTQLK-FLHSLNVS 276
Query: 495 YNNLSGLLPQ 504
+NNL G +PQ
Sbjct: 277 FNNLCGEIPQ 286
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 110/249 (44%), Gaps = 55/249 (22%)
Query: 209 DLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGN 268
+L G IP ++ +T+L +L ++ +S +P F+ + +L LD N LSG LP SI +
Sbjct: 88 NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147
Query: 269 LASLEQVDLSLNRFLGKVPSSLGNLTQLHW-LSLASNDFSGELPASFGNLRSLRTLDVYE 327
L +L + NR G +P S G+ ++L ++++ N +G++P +F NL
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL---------- 197
Query: 328 CKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKAT 387
+L+F+D S N G D + + K + L+ N L
Sbjct: 198 ---------------NLAFVDLSRNMLEG--DASVLFGSDKNTQKIHLAKNSL------- 233
Query: 388 SNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHL 447
A L L++ +L LDL +N+I G +P+ L ++ L
Sbjct: 234 ---------AFDLGKVGLSK---------NLNGLDLRNNRIYGTLPQGLTQ--LKFLHSL 273
Query: 448 NLSHNFLTG 456
N+S N L G
Sbjct: 274 NVSFNNLCG 282
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 107/272 (39%), Gaps = 57/272 (20%)
Query: 334 IPSSLSNLTHLSFLDFS-LNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTS 392
IPSSL+NL +L+FL +NN G + I + L++L+++ +S
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ--LHYLYITHTNVS----------- 114
Query: 393 HRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHN 452
IP FL L LD + N ++G +P PS+ +
Sbjct: 115 -------------GAIPDFLSQIKTLVTLDFSYNALSGTLP-----PSISSL-------- 148
Query: 453 FLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDW 512
PN V N ++G IP + S S+ +S N L+G +P N +
Sbjct: 149 --------PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-- 198
Query: 513 LSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQ---GRIPRSLANCSNLEFLDLGDN 569
L+ +DL N G + I L+ N L G++ S NL LDL +N
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS----KNLNGLDLRNN 254
Query: 570 QIRDIFPSWLGTLPDLNVLILKSNKFHGLIRE 601
+I P L L L+ L + N G I +
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 89/218 (40%), Gaps = 7/218 (3%)
Query: 149 DLSHNSYYDPVELRKPSLGNLAD-KLTNLKELVLGDVTISSPIPHNXXXXXXXXXXXXXG 207
D S+N + +EL G KL +LK L + G
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358
Query: 208 CDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIG 267
+G S T L +LDLSFN + F+G L L+ LD +NL S+
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVF 417
Query: 268 -NLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGE-LPASFGNLRSLRTLDV 325
+L +L +D+S L+ L L +A N F LP F LR+L LD+
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477
Query: 326 YECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIF 363
+C+ P++ ++L+ L L+ S NNF LD F
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMSHNNF---FSLDTF 512
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 116/444 (26%), Positives = 170/444 (38%), Gaps = 90/444 (20%)
Query: 213 RIPSSLGNITRLIHLDLSFNKLSDELPTFIGTL----------------------GSLKE 250
++P N+T L HLDLS NK+ T + L G+ KE
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199
Query: 251 LDL----LQNNLSG--ELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLAS- 303
+ L L+NN + I LA LE L L F + GNL + +L
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE-----GNLEKFDKSALEGL 254
Query: 304 -NDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDI 362
N E ++ + +D++ C + SL ++T DFS N G L+
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNC-LTNVSSFSLVSVTIERVKDFSYN--FGWQHLE- 310
Query: 363 FLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLD 422
LVN K L L LT TSN + F V L S LE LD
Sbjct: 311 -LVNCKFGQFPTLKLKSLKRLT-FTSNKGGNAFSEVDLPS---------------LEFLD 353
Query: 423 LASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWIC 482
L+ N ++ K D + +L+LS N + +S+N L E
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-----------MSSNFLGLE------ 396
Query: 483 NLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKG-----NIL 537
+LE LD ++NL + FS +LS+ +L + S T G + L
Sbjct: 397 ----QLEHLDFQHSNLKQ-----MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447
Query: 538 KVIDLSDNLLQGR-IPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFH 596
+V+ ++ N Q +P NL FLDL Q+ + P+ +L L VL + N F
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507
Query: 597 GLIREPKTDCGFPKLRIIDLSKNR 620
L P C L+++D S N
Sbjct: 508 SLDTFP-YKC-LNSLQVLDYSLNH 529
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 90/243 (37%), Gaps = 46/243 (18%)
Query: 73 LDLSSSCLQGSINSSSSLFKLVHLEWLDLAFN-------DFDGSEIPPEIIXXXXXXXXX 125
LDLS + L S S F L++LDL+FN +F G E +
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 411
Query: 126 XXXAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVT 185
+ F L L L YLD+SH + + + + L++L+ L + +
Sbjct: 412 SEFSVF--------LSLRNLIYLDISHTH-------TRVAFNGIFNGLSSLEVLKMAGNS 456
Query: 186 ISSPIPHNXXXXXXXXXXXXXGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTL 245
+P + L LDLS +L PT +L
Sbjct: 457 FQ-----------------------ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493
Query: 246 GSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNL-TQLHWLSLASN 304
SL+ L++ NN L SL+ +D SLN + L + + L +L+L N
Sbjct: 494 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553
Query: 305 DFS 307
DF+
Sbjct: 554 DFA 556
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 700 ISNLKGLQILSLADNSLHG-HIPSCLGNLTDLESLDLSNNR 739
I +LK L+ L++A N + +P NLT+LE LDLS+N+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 245 LGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLG-KVPSSLGNLTQLHWLSLAS 303
L SL++L ++ NL+ IG+L +L++++++ N K+P NLT L L L+S
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 304 N 304
N
Sbjct: 159 N 159
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 6/159 (3%)
Query: 207 GCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSI 266
G +G S T L +LDLSFN + F+G L L+ LD +NL S+
Sbjct: 63 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSV 121
Query: 267 G-NLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGE-LPASFGNLRSLRTLD 324
+L +L +D+S L+ L L +A N F LP F LR+L LD
Sbjct: 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181
Query: 325 VYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIF 363
+ +C+ P++ ++L+ L L+ S NNF LD F
Sbjct: 182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNF---FSLDTF 217
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 13/140 (9%)
Query: 487 RLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKG-----NILKVID 541
+LE LD ++NL + FS +LS+ +L + S T G + L+V+
Sbjct: 102 QLEHLDFQHSNLKQM-----SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156
Query: 542 LSDNLLQGR-IPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIR 600
++ N Q +P NL FLDL Q+ + P+ +L L VL + N F L
Sbjct: 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 216
Query: 601 EPKTDCGFPKLRIIDLSKNR 620
P L+++D S N
Sbjct: 217 FPYK--CLNSLQVLDYSLNH 234
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 101/261 (38%), Gaps = 29/261 (11%)
Query: 270 ASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASN--DFSGELPASFGNLRSLRTLDVYE 327
+S +++L N+ LTQL LSL+SN F G S SL+ LD+
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL-- 85
Query: 328 CKFSGQIP--SSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTK 385
F+G I S+ L L LDF +N + +FL L+Y T+
Sbjct: 86 -SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 144
Query: 386 ATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFG 445
+ +S ++ S +P +L LDL+ ++ P S+ +
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF--NSLSSLQ 202
Query: 446 HLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQC 505
LN+SHN D P + C N L+ LD S N++ Q
Sbjct: 203 VLNMSHNNFFSLDTFP------------------YKC--LNSLQVLDYSLNHIMTSKKQE 242
Query: 506 LGNFSDWLSILDLQHNKFSGT 526
L +F L+ L+L N F+ T
Sbjct: 243 LQHFPSSLAFLNLTQNDFACT 263
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 92/247 (37%), Gaps = 46/247 (18%)
Query: 69 HVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFN-------DFDGSEIPPEIIXXXXX 121
+ KL LSS+ L S S F L++LDL+FN +F G E +
Sbjct: 53 QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 112
Query: 122 XXXXXXXAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVL 181
+ F L L L YLD+SH + + + + L++L+ L +
Sbjct: 113 LKQMSEFSVF--------LSLRNLIYLDISHTH-------TRVAFNGIFNGLSSLEVLKM 157
Query: 182 GDVTISSPIPHNXXXXXXXXXXXXXGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTF 241
+ +P + L LDLS +L PT
Sbjct: 158 AGNSFQENF-----------------------LPDIFTELRNLTFLDLSQCQLEQLSPTA 194
Query: 242 IGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNL-TQLHWLS 300
+L SL+ L++ NN L SL+ +D SLN + L + + L +L+
Sbjct: 195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 254
Query: 301 LASNDFS 307
L NDF+
Sbjct: 255 LTQNDFA 261
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 96/231 (41%), Gaps = 31/231 (13%)
Query: 564 LDLGDNQIRDIFPSWLGTLPDLNVLILKSN--KFHGLIREPKTDCGFPKLRIIDLSKN-- 619
L+L N+++ + L L L L SN F G + +D G L+ +DLS N
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ--SDFGTTSLKYLDLSFNGV 90
Query: 620 -----RFTG--KLPSMAFQCWNAMKVVNASELRYMQEVIPFN--------EGNGIYD--Y 662
F G +L + FQ N ++ S ++ +I + NGI++
Sbjct: 91 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 150
Query: 663 SL-TMSNKGQMMSYKKIPDI------LTAVILSSNRFDGEIPTSISNLKGLQILSLADNS 715
SL + G +PDI LT + LS + + PT+ ++L LQ+L+++ N+
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210
Query: 716 LHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVEL-TFLEFFNVSDNHFT 765
L L+ LD S N Q+L + L F N++ N F
Sbjct: 211 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 125/295 (42%), Gaps = 35/295 (11%)
Query: 487 RLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNL 546
R++ LDL+ +L+GL G + L L L N F D L + N L D
Sbjct: 278 RVQELDLTAAHLNGLPSGIEG--MNSLKKLVLNANSF-----DQLCQINAASFPSLRDLY 330
Query: 547 LQGRI------PRSLANCSNLEFLDLGDNQIR--DIFPSWLGTLPDLNVLILKSNKFHGL 598
++G + R L NL+ LDL + I D L L L L L N+ GL
Sbjct: 331 IKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGL 390
Query: 599 IREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASE----------LRYMQ 648
+ +C P+L ++D++ K P FQ + ++V+N S L +Q
Sbjct: 391 EDQAFKEC--PQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQ 448
Query: 649 EVIPFN-EGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQ 707
++ N +GN D S++ +N QM+ +I +ILSS + L+ +
Sbjct: 449 DLRHLNLQGNSFQDGSISKTNLLQMVGSLEI------LILSSCNLLSIDQQAFHGLRNVN 502
Query: 708 ILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDN 762
L L+ NSL G L +L L L++++N P L L+ N+S N
Sbjct: 503 HLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLSHN 556
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 39/194 (20%)
Query: 578 WLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMK 637
WLGT D + L S F GL C + I+L K+RF+ L S F+C+ ++
Sbjct: 230 WLGTFEDTDDQYLTSATFEGL-------CDM-SVESINLQKHRFS-DLSSSTFRCFTRVQ 280
Query: 638 VVN--ASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGE 695
++ A+ L + I EG M S KK+ +L++N FD
Sbjct: 281 ELDLTAAHLNGLPSGI---EG---------------MNSLKKL-------VLNANSFDQL 315
Query: 696 IPTSISNLKGLQILSLADNSLHGHIPS-CLGNLTDLESLDLSNNRFSGQ--IPQQLVELT 752
+ ++ L+ L + N + + CL L +L+ LDLS++ QL L
Sbjct: 316 CQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLR 375
Query: 753 FLEFFNVSDNHFTG 766
L++ N+S N G
Sbjct: 376 HLQYLNLSYNEPLG 389
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 60 GVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSE 110
G +C E ++ KLDLS S ++ S + L L HL++L+L++N+ G E
Sbjct: 341 GTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLE 391
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 88/218 (40%), Gaps = 7/218 (3%)
Query: 149 DLSHNSYYDPVELRKPSLGNLAD-KLTNLKELVLGDVTISSPIPHNXXXXXXXXXXXXXG 207
D S+N + +EL G KL +LK L + G
Sbjct: 323 DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 382
Query: 208 CDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIG 267
+G S L +LDLSFN + F+G L L+ LD +NL S+
Sbjct: 383 LSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVF 441
Query: 268 -NLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGE-LPASFGNLRSLRTLDV 325
+L +L +D+S L+ L L +A N F LP F LR+L LD+
Sbjct: 442 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 501
Query: 326 YECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIF 363
+C+ P++ ++L+ L L+ S NNF LD F
Sbjct: 502 SQCQLEQLSPTAFNSLSSLQVLNMSHNNF---FSLDTF 536
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 121/463 (26%), Positives = 188/463 (40%), Gaps = 88/463 (19%)
Query: 216 SSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNL-SGELPNSIGNLASLEQ 274
S L ++ +L+ ++ + L + P IG L +LKEL++ N + S +LP NL +LE
Sbjct: 121 SGLSSLQKLVAVETNLASL-ENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 177
Query: 275 VDLSLN----------RFLGKVPSSLG---------NLTQ--------LHWLSLASNDFS 307
+DLS N R L ++P N Q LH L+L +N
Sbjct: 178 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN--F 235
Query: 308 GELPASFGNLRSLRTLDVYEC------------KFSGQIPSSLSNLT----HLSFLDFSL 351
L ++ L L+V+ KF L NLT L++LD+ L
Sbjct: 236 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 295
Query: 352 NNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRF--RAVSLCSCDLTEIP 409
+ G +DL L N +S+ L +T S+ F + + L +C + P
Sbjct: 296 D---GIIDLFNCLTN--------VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 344
Query: 410 KF-LKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLV 468
LK+ L+ L SNK G + PS++ L+LS N L+ + +
Sbjct: 345 TLKLKS---LKRLTFTSNK-GGNAFSEVDLPSLE---FLDLSRNGLSFKGCCSQSDFGTI 397
Query: 469 SNNSLTGEIPSWICNLSN-----RLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKF 523
S L I SN +LE LD ++NL + FS +LS+ +L +
Sbjct: 398 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM-----SEFSVFLSLRNLIYLDI 452
Query: 524 SGTIPDNLLKG-----NILKVIDLSDNLLQGR-IPRSLANCSNLEFLDLGDNQIRDIFPS 577
S T G + L+V+ ++ N Q +P NL FLDL Q+ + P+
Sbjct: 453 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 512
Query: 578 WLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNR 620
+L L VL + N F L P C L+++D S N
Sbjct: 513 AFNSLSSLQVLNMSHNNFFSLDTFP-YKC-LNSLQVLDYSLNH 553
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 91/243 (37%), Gaps = 46/243 (18%)
Query: 73 LDLSSSCLQGSINSSSSLFKLVHLEWLDLAFN-------DFDGSEIPPEIIXXXXXXXXX 125
LDLS + L S S F + L++LDL+FN +F G E +
Sbjct: 376 LDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 435
Query: 126 XXXAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVT 185
+ F L L L YLD+SH + + + + L++L+ L + +
Sbjct: 436 SEFSVF--------LSLRNLIYLDISHTH-------TRVAFNGIFNGLSSLEVLKMAGNS 480
Query: 186 ISSPIPHNXXXXXXXXXXXXXGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTL 245
+P + L LDLS +L PT +L
Sbjct: 481 FQENF-----------------------LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 517
Query: 246 GSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNL-TQLHWLSLASN 304
SL+ L++ NN L SL+ +D SLN + L + + L +L+L N
Sbjct: 518 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577
Query: 305 DFS 307
DF+
Sbjct: 578 DFA 580
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 700 ISNLKGLQILSLADNSLHG-HIPSCLGNLTDLESLDLSNNR 739
I +LK L+ L++A N + +P NLT+LE LDLS+N+
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 208 CDLRGRIPSSLGNITRLIHLDLSFNKL-SDELPTFIGTLGSLKELDLLQNNLSGELPNSI 266
C+++ + +++ L L L+ N + S L F G L SL++L ++ NL+ I
Sbjct: 86 CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVETNLASLENFPI 144
Query: 267 GNLASLEQVDLSLNRFLG-KVPSSLGNLTQLHWLSLASN 304
G+L +L++++++ N K+P NLT L L L+SN
Sbjct: 145 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 84/185 (45%), Gaps = 34/185 (18%)
Query: 218 LGNITRLIHLDLSFNKLSD--------ELPTFIGT---------LGSLKELDLLQNNLSG 260
L N+T L LD+S NK+SD L + I T LG L LD L L+G
Sbjct: 169 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS--LNG 226
Query: 261 ELPNSIGNLASLEQ---VDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNL 317
IG LASL +DL+ N+ P L LT+L L L +N S P L
Sbjct: 227 NQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 282
Query: 318 RSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNH-KLLYHLFLS 376
+L L++ E + P +SNL +L++L NN S DI V+ L LF S
Sbjct: 283 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS-----DISPVSSLTKLQRLFFS 335
Query: 377 TNRLS 381
N++S
Sbjct: 336 NNKVS 340
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 99/362 (27%), Positives = 146/362 (40%), Gaps = 79/362 (21%)
Query: 218 LGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDL 277
L N+T+L+ + ++ N+++D P + L +L L L N ++ P + NL +L +++L
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 136
Query: 278 SLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSS 337
S N S+L LT L LS +SN + P NL +L LD+ K S S
Sbjct: 137 SSNTI--SDISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISV 190
Query: 338 LSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRA 397
L+ LT+L L + N S L I
Sbjct: 191 LAKLTNLESLIATNNQISDITPLGIL-----------------------------TNLDE 221
Query: 398 VSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGF 457
+SL L +I L + +L LDLA+N+I+ P + L L N ++
Sbjct: 222 LSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAPL----SGLTKLTELKLGANQISNI 276
Query: 458 DQHPNTV---NYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLS 514
N ++ N L E S I NL N L L L +NN+S + P S
Sbjct: 277 SPLAGLTALTNLELNENQL--EDISPISNLKN-LTYLTLYFNNISDISPVS--------S 325
Query: 515 ILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDI 574
+ LQ FS KV D+S SLAN +N+ +L G NQI D+
Sbjct: 326 LTKLQRLFFSNN-----------KVSDVS----------SLANLTNINWLSAGHNQISDL 364
Query: 575 FP 576
P
Sbjct: 365 TP 366
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 103/245 (42%), Gaps = 42/245 (17%)
Query: 513 LSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIR 572
L+ ++ +N+ + P LK N+ K++D+ N Q LAN +NL L L +NQI
Sbjct: 65 LTQINFSNNQLTDITP---LK-NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT 120
Query: 573 DIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQC 632
DI P L L +LN L L SN I + G L+ + S N+ T P
Sbjct: 121 DIDP--LKNLTNLNRLELSSNT----ISDISALSGLTSLQQLSFSSNQVTDLKPLANLTT 174
Query: 633 WNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRF 692
+ + N + D S+ K+ + L ++I ++N+
Sbjct: 175 LERLDI----------------SSNKVSDISV----------LAKLTN-LESLIATNNQI 207
Query: 693 DGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIP-QQLVEL 751
P I L L LSL N L L +LT+L LDL+NN+ S P L +L
Sbjct: 208 SDITPLGI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKL 263
Query: 752 TFLEF 756
T L+
Sbjct: 264 TELKL 268
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 84/185 (45%), Gaps = 34/185 (18%)
Query: 218 LGNITRLIHLDLSFNKLSD--------ELPTFIGT---------LGSLKELDLLQNNLSG 260
L N+T L LD+S NK+SD L + I T LG L LD L L+G
Sbjct: 168 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS--LNG 225
Query: 261 ELPNSIGNLASLEQ---VDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNL 317
IG LASL +DL+ N+ P L LT+L L L +N S P L
Sbjct: 226 NQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 281
Query: 318 RSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNH-KLLYHLFLS 376
+L L++ E + P +SNL +L++L NN S DI V+ L LF S
Sbjct: 282 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS-----DISPVSSLTKLQRLFFS 334
Query: 377 TNRLS 381
N++S
Sbjct: 335 NNKVS 339
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 106/360 (29%), Positives = 152/360 (42%), Gaps = 64/360 (17%)
Query: 223 RLIHLDLSFNKLSDELPTFIGTLGSLKEL-DLLQNNLSGELPNSIGNLASLEQVDLSLNR 281
L ++ S N+L+D P L +L +L D+L NN + NL +L + L N+
Sbjct: 64 NLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 118
Query: 282 FLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIP--SSLS 339
P L NLT L+ L L+SN S ++ L SL+ L+ F Q+ L+
Sbjct: 119 ITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLN-----FGNQVTDLKPLA 169
Query: 340 NLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVS 399
NLT L LD S N S D+ + L L L + N++S +T T +S
Sbjct: 170 NLTTLERLDISSNKVS---DISV-LAKLTNLESLIATNNQISDITPLGILT---NLDELS 222
Query: 400 LCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQ 459
L L +I L + +L LDLA+N+I+ P + L L N ++
Sbjct: 223 LNGNQLKDI-GTLASLTNLTDLDLANNQISNLAPL----SGLTKLTELKLGANQISNISP 277
Query: 460 HPNTV---NYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSIL 516
N ++ N L E S I NL N L L L +NN+S + P S+
Sbjct: 278 LAGLTALTNLELNENQL--EDISPISNLKN-LTYLTLYFNNISDISPVS--------SLT 326
Query: 517 DLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFP 576
LQ FS KV D+S SLAN +N+ +L G NQI D+ P
Sbjct: 327 KLQRLFFSNN-----------KVSDVS----------SLANLTNINWLSAGHNQISDLTP 365
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 116/271 (42%), Gaps = 39/271 (14%)
Query: 513 LSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIR 572
L+ ++ +N+ + P LK N+ K++D+ N Q LAN +NL L L +NQI
Sbjct: 65 LTQINFSNNQLTDITP---LK-NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT 120
Query: 573 DIFPSWLGTLPDLNVLILKSN-----------------KFHGLIREPKTDCGFPKLRIID 615
DI P L L +LN L L SN F + + K L +D
Sbjct: 121 DIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLD 178
Query: 616 LSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSY 675
+S N+ + S+ + N ++ + + ++ P + + SL N Q+
Sbjct: 179 ISSNKVSDI--SVLAKLTNLESLIATN--NQISDITPLGILTNLDELSL---NGNQLKDI 231
Query: 676 KKIPDI--LTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESL 733
+ + LT + L++N+ P +S L L L L N + P L LT L +L
Sbjct: 232 GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNL 287
Query: 734 DLSNNRFSGQIP-QQLVELTFLEFF--NVSD 761
+L+ N+ P L LT+L + N+SD
Sbjct: 288 ELNENQLEDISPISNLKNLTYLTLYFNNISD 318
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 84/185 (45%), Gaps = 34/185 (18%)
Query: 218 LGNITRLIHLDLSFNKLSD--------ELPTFIGT---------LGSLKELDLLQNNLSG 260
L N+T L LD+S NK+SD L + I T LG L LD L L+G
Sbjct: 172 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS--LNG 229
Query: 261 ELPNSIGNLASLEQ---VDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNL 317
IG LASL +DL+ N+ P L LT+L L L +N S P L
Sbjct: 230 NQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 285
Query: 318 RSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNH-KLLYHLFLS 376
+L L++ E + P +SNL +L++L NN S DI V+ L LF +
Sbjct: 286 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS-----DISPVSSLTKLQRLFFA 338
Query: 377 TNRLS 381
N++S
Sbjct: 339 NNKVS 343
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 104/360 (28%), Positives = 151/360 (41%), Gaps = 64/360 (17%)
Query: 223 RLIHLDLSFNKLSDELPTFIGTLGSLKEL-DLLQNNLSGELPNSIGNLASLEQVDLSLNR 281
L ++ S N+L+D P L +L +L D+L NN + NL +L + L N+
Sbjct: 68 NLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 122
Query: 282 FLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIP--SSLS 339
P L NLT L+ L L+SN S ++ L SL+ + F Q+ L+
Sbjct: 123 ITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQ-----QLSFGNQVTDLKPLA 173
Query: 340 NLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVS 399
NLT L LD S N S D+ + L L L + N++S +T T +S
Sbjct: 174 NLTTLERLDISSNKVS---DISV-LAKLTNLESLIATNNQISDITPLGILT---NLDELS 226
Query: 400 LCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQ 459
L L +I L + +L LDLA+N+I+ P + L L N ++
Sbjct: 227 LNGNQLKDI-GTLASLTNLTDLDLANNQISNLAPL----SGLTKLTELKLGANQISNISP 281
Query: 460 HPNTV---NYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSIL 516
N ++ N L E S I NL N L L L +NN+S + P S+
Sbjct: 282 LAGLTALTNLELNENQL--EDISPISNLKN-LTYLTLYFNNISDISPVS--------SLT 330
Query: 517 DLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFP 576
LQ F+ KV D+S SLAN +N+ +L G NQI D+ P
Sbjct: 331 KLQRLFFANN-----------KVSDVS----------SLANLTNINWLSAGHNQISDLTP 369
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 116/271 (42%), Gaps = 39/271 (14%)
Query: 513 LSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIR 572
L+ ++ +N+ + P LK N+ K++D+ N Q LAN +NL L L +NQI
Sbjct: 69 LTQINFSNNQLTDITP---LK-NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT 124
Query: 573 DIFPSWLGTLPDLNVLILKSN-----------------KFHGLIREPKTDCGFPKLRIID 615
DI P L L +LN L L SN F + + K L +D
Sbjct: 125 DIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 182
Query: 616 LSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSY 675
+S N+ + S+ + N ++ + + ++ P + + SL N Q+
Sbjct: 183 ISSNKVSDI--SVLAKLTNLESLIATN--NQISDITPLGILTNLDELSL---NGNQLKDI 235
Query: 676 KKIPDI--LTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESL 733
+ + LT + L++N+ P +S L L L L N + P L LT L +L
Sbjct: 236 GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNL 291
Query: 734 DLSNNRFSGQIP-QQLVELTFLEFF--NVSD 761
+L+ N+ P L LT+L + N+SD
Sbjct: 292 ELNENQLEDISPISNLKNLTYLTLYFNNISD 322
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 83/185 (44%), Gaps = 34/185 (18%)
Query: 218 LGNITRLIHLDLSFNKLSD--------ELPTFIGT---------LGSLKELDLLQNNLSG 260
L N+T L LD+S NK+SD L + I T LG L LD L L+G
Sbjct: 169 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS--LNG 226
Query: 261 ELPNSIGNLASLEQ---VDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNL 317
IG LASL +DL+ N+ P L LT+L L L +N S P L
Sbjct: 227 NQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 282
Query: 318 RSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNH-KLLYHLFLS 376
+L L++ E + P +SNL +L++L NN S DI V+ L LF
Sbjct: 283 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS-----DISPVSSLTKLQRLFFY 335
Query: 377 TNRLS 381
N++S
Sbjct: 336 NNKVS 340
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 98/362 (27%), Positives = 145/362 (40%), Gaps = 79/362 (21%)
Query: 218 LGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDL 277
L N+T+L+ + ++ N+++D P + L +L L L N ++ P + NL +L +++L
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 136
Query: 278 SLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSS 337
S N S+L LT L LS +SN + P NL +L LD+ K S S
Sbjct: 137 SSNTI--SDISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISV 190
Query: 338 LSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRA 397
L+ LT+L L + N S L I
Sbjct: 191 LAKLTNLESLIATNNQISDITPLGIL-----------------------------TNLDE 221
Query: 398 VSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGF 457
+SL L +I L + +L LDLA+N+I+ P + L L N ++
Sbjct: 222 LSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAPL----SGLTKLTELKLGANQISNI 276
Query: 458 DQHPNTV---NYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLS 514
N ++ N L E S I NL N L L L +NN+S + P S
Sbjct: 277 SPLAGLTALTNLELNENQL--EDISPISNLKN-LTYLTLYFNNISDISPVS--------S 325
Query: 515 ILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDI 574
+ LQ F KV D+S SLAN +N+ +L G NQI D+
Sbjct: 326 LTKLQRLFFYNN-----------KVSDVS----------SLANLTNINWLSAGHNQISDL 364
Query: 575 FP 576
P
Sbjct: 365 TP 366
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 103/245 (42%), Gaps = 42/245 (17%)
Query: 513 LSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIR 572
L+ ++ +N+ + P LK N+ K++D+ N Q LAN +NL L L +NQI
Sbjct: 65 LTQINFSNNQLTDITP---LK-NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT 120
Query: 573 DIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQC 632
DI P L L +LN L L SN I + G L+ + S N+ T P
Sbjct: 121 DIDP--LKNLTNLNRLELSSNT----ISDISALSGLTSLQQLSFSSNQVTDLKPLANLTT 174
Query: 633 WNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRF 692
+ + N + D S+ K+ + L ++I ++N+
Sbjct: 175 LERLDI----------------SSNKVSDISV----------LAKLTN-LESLIATNNQI 207
Query: 693 DGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIP-QQLVEL 751
P I L L LSL N L L +LT+L LDL+NN+ S P L +L
Sbjct: 208 SDITPLGI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKL 263
Query: 752 TFLEF 756
T L+
Sbjct: 264 TELKL 268
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 83/185 (44%), Gaps = 34/185 (18%)
Query: 218 LGNITRLIHLDLSFNKLSD--------ELPTFIGT---------LGSLKELDLLQNNLSG 260
L N+T L LD+S NK+SD L + I T LG L LD L L+G
Sbjct: 173 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS--LNG 230
Query: 261 ELPNSIGNLASLEQ---VDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNL 317
IG LASL +DL+ N+ P L LT+L L L +N S P L
Sbjct: 231 NQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 286
Query: 318 RSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNH-KLLYHLFLS 376
+L L++ E + P +SNL +L++L NN S DI V+ L LF
Sbjct: 287 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS-----DISPVSSLTKLQRLFFY 339
Query: 377 TNRLS 381
N++S
Sbjct: 340 NNKVS 344
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 104/360 (28%), Positives = 150/360 (41%), Gaps = 64/360 (17%)
Query: 223 RLIHLDLSFNKLSDELPTFIGTLGSLKEL-DLLQNNLSGELPNSIGNLASLEQVDLSLNR 281
L ++ S N+L+D P L +L +L D+L NN + NL +L + L N+
Sbjct: 69 NLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 123
Query: 282 FLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIP--SSLS 339
P L NLT L+ L L+SN S ++ L SL+ + F Q+ L+
Sbjct: 124 ITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQ-----QLSFGNQVTDLKPLA 174
Query: 340 NLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVS 399
NLT L LD S N S D+ + L L L + N++S +T T +S
Sbjct: 175 NLTTLERLDISSNKVS---DISV-LAKLTNLESLIATNNQISDITPLGILT---NLDELS 227
Query: 400 LCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQ 459
L L +I L + +L LDLA+N+I+ P + L L N ++
Sbjct: 228 LNGNQLKDI-GTLASLTNLTDLDLANNQISNLAPL----SGLTKLTELKLGANQISNISP 282
Query: 460 HPNTV---NYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSIL 516
N ++ N L E S I NL N L L L +NN+S + P S+
Sbjct: 283 LAGLTALTNLELNENQL--EDISPISNLKN-LTYLTLYFNNISDISPVS--------SLT 331
Query: 517 DLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFP 576
LQ F KV D+S SLAN +N+ +L G NQI D+ P
Sbjct: 332 KLQRLFFYNN-----------KVSDVS----------SLANLTNINWLSAGHNQISDLTP 370
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 116/271 (42%), Gaps = 39/271 (14%)
Query: 513 LSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIR 572
L+ ++ +N+ + P LK N+ K++D+ N Q LAN +NL L L +NQI
Sbjct: 70 LTQINFSNNQLTDITP---LK-NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT 125
Query: 573 DIFPSWLGTLPDLNVLILKSN-----------------KFHGLIREPKTDCGFPKLRIID 615
DI P L L +LN L L SN F + + K L +D
Sbjct: 126 DIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 183
Query: 616 LSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSY 675
+S N+ + S+ + N ++ + + ++ P + + SL N Q+
Sbjct: 184 ISSNKVSDI--SVLAKLTNLESLIATN--NQISDITPLGILTNLDELSL---NGNQLKDI 236
Query: 676 KKIPDI--LTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESL 733
+ + LT + L++N+ P +S L L L L N + P L LT L +L
Sbjct: 237 GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNL 292
Query: 734 DLSNNRFSGQIP-QQLVELTFLEFF--NVSD 761
+L+ N+ P L LT+L + N+SD
Sbjct: 293 ELNENQLEDISPISNLKNLTYLTLYFNNISD 323
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 83/185 (44%), Gaps = 34/185 (18%)
Query: 218 LGNITRLIHLDLSFNKLSD--------ELPTFIGT---------LGSLKELDLLQNNLSG 260
L N+T L LD+S NK+SD L + I T LG L LD L L+G
Sbjct: 169 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS--LNG 226
Query: 261 ELPNSIGNLASLEQ---VDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNL 317
IG LASL +DL+ N+ P L LT+L L L +N S P L
Sbjct: 227 NQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 282
Query: 318 RSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNH-KLLYHLFLS 376
+L L++ E + P +SNL +L++L NN S DI V+ L LF
Sbjct: 283 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS-----DISPVSSLTKLQRLFFY 335
Query: 377 TNRLS 381
N++S
Sbjct: 336 NNKVS 340
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 97/362 (26%), Positives = 145/362 (40%), Gaps = 79/362 (21%)
Query: 218 LGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDL 277
L N+T+L+ + ++ N+++D P + L +L L L N ++ P + NL +L +++L
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 136
Query: 278 SLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSS 337
S N S+L LT L L+ +SN + P NL +L LD+ K S S
Sbjct: 137 SSNTI--SDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISV 190
Query: 338 LSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRA 397
L+ LT+L L + N S L I
Sbjct: 191 LAKLTNLESLIATNNQISDITPLGIL-----------------------------TNLDE 221
Query: 398 VSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGF 457
+SL L +I L + +L LDLA+N+I+ P + L L N ++
Sbjct: 222 LSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAPL----SGLTKLTELKLGANQISNI 276
Query: 458 DQHPNTV---NYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLS 514
N ++ N L E S I NL N L L L +NN+S + P S
Sbjct: 277 SPLAGLTALTNLELNENQL--EDISPISNLKN-LTYLTLYFNNISDISPVS--------S 325
Query: 515 ILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDI 574
+ LQ F KV D+S SLAN +N+ +L G NQI D+
Sbjct: 326 LTKLQRLFFYNN-----------KVSDVS----------SLANLTNINWLSAGHNQISDL 364
Query: 575 FP 576
P
Sbjct: 365 TP 366
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 104/245 (42%), Gaps = 42/245 (17%)
Query: 513 LSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIR 572
L+ ++ +N+ + P LK N+ K++D+ N Q LAN +NL L L +NQI
Sbjct: 65 LTQINFSNNQLTDITP---LK-NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT 120
Query: 573 DIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQC 632
DI P L L +LN L L SN I + G L+ ++ S N+ T P
Sbjct: 121 DIDP--LKNLTNLNRLELSSNT----ISDISALSGLTSLQQLNFSSNQVTDLKPLANLTT 174
Query: 633 WNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRF 692
+ + N + D S+ K+ + L ++I ++N+
Sbjct: 175 LERLDI----------------SSNKVSDISV----------LAKLTN-LESLIATNNQI 207
Query: 693 DGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIP-QQLVEL 751
P I L L LSL N L L +LT+L LDL+NN+ S P L +L
Sbjct: 208 SDITPLGI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKL 263
Query: 752 TFLEF 756
T L+
Sbjct: 264 TELKL 268
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 83/185 (44%), Gaps = 34/185 (18%)
Query: 218 LGNITRLIHLDLSFNKLSD--------ELPTFIGT---------LGSLKELDLLQNNLSG 260
L N+T L LD+S NK+SD L + I T LG L LD L L+G
Sbjct: 168 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS--LNG 225
Query: 261 ELPNSIGNLASLEQ---VDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNL 317
IG LASL +DL+ N+ P L LT+L L L +N S P L
Sbjct: 226 NQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 281
Query: 318 RSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNH-KLLYHLFLS 376
+L L++ E + P +SNL +L++L NN S DI V+ L LF
Sbjct: 282 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS-----DISPVSSLTKLQRLFFY 334
Query: 377 TNRLS 381
N++S
Sbjct: 335 NNKVS 339
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 105/360 (29%), Positives = 151/360 (41%), Gaps = 64/360 (17%)
Query: 223 RLIHLDLSFNKLSDELPTFIGTLGSLKEL-DLLQNNLSGELPNSIGNLASLEQVDLSLNR 281
L ++ S N+L+D P L +L +L D+L NN + NL +L + L N+
Sbjct: 64 NLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 118
Query: 282 FLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIP--SSLS 339
P L NLT L+ L L+SN S ++ L SL+ L+ F Q+ L+
Sbjct: 119 ITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLN-----FGNQVTDLKPLA 169
Query: 340 NLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVS 399
NLT L LD S N S D+ + L L L + N++S +T T +S
Sbjct: 170 NLTTLERLDISSNKVS---DISV-LAKLTNLESLIATNNQISDITPLGILT---NLDELS 222
Query: 400 LCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQ 459
L L +I L + +L LDLA+N+I+ P + L L N ++
Sbjct: 223 LNGNQLKDIGT-LASLTNLTDLDLANNQISNLAPL----SGLTKLTELKLGANQISNISP 277
Query: 460 HPNTV---NYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSIL 516
N ++ N L E S I NL N L L L +NN+S + P S+
Sbjct: 278 LAGLTALTNLELNENQL--EDISPISNLKN-LTYLTLYFNNISDISPVS--------SLT 326
Query: 517 DLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFP 576
LQ F KV D+S SLAN +N+ +L G NQI D+ P
Sbjct: 327 KLQRLFFYNN-----------KVSDVS----------SLANLTNINWLSAGHNQISDLTP 365
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 116/271 (42%), Gaps = 39/271 (14%)
Query: 513 LSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIR 572
L+ ++ +N+ + P LK N+ K++D+ N Q LAN +NL L L +NQI
Sbjct: 65 LTQINFSNNQLTDITP---LK-NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT 120
Query: 573 DIFPSWLGTLPDLNVLILKSN-----------------KFHGLIREPKTDCGFPKLRIID 615
DI P L L +LN L L SN F + + K L +D
Sbjct: 121 DIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLD 178
Query: 616 LSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSY 675
+S N+ + S+ + N ++ + + ++ P + + SL N Q+
Sbjct: 179 ISSNKVSDI--SVLAKLTNLESLIATN--NQISDITPLGILTNLDELSL---NGNQLKDI 231
Query: 676 KKIPDI--LTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESL 733
+ + LT + L++N+ P +S L L L L N + P L LT L +L
Sbjct: 232 GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNL 287
Query: 734 DLSNNRFSGQIP-QQLVELTFLEFF--NVSD 761
+L+ N+ P L LT+L + N+SD
Sbjct: 288 ELNENQLEDISPISNLKNLTYLTLYFNNISD 318
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 85/214 (39%), Gaps = 4/214 (1%)
Query: 149 DLSHNSYYDPVELRKPSLGNLAD-KLTNLKELVLGDVTISSPIPHNXXXXXXXXXXXXXG 207
D S+N + +EL G KL +LK L + G
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358
Query: 208 CDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIG 267
+G S T L +LDLSFN + F+G L L+ LD +NL S+
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVF 417
Query: 268 -NLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGE-LPASFGNLRSLRTLDV 325
+L +L +D+S L+ L L +A N F LP F LR+L LD+
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477
Query: 326 YECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMD 359
+C+ P++ ++L+ L L+ + N D
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 109/422 (25%), Positives = 162/422 (38%), Gaps = 88/422 (20%)
Query: 213 RIPSSLGNITRLIHLDLSFNKLSDELPTFIGTL----------------------GSLKE 250
++P N+T L HLDLS NK+ T + L G+ KE
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199
Query: 251 LDL----LQNNLSG--ELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLAS- 303
+ L L+NN + I LA LE L L F + GNL + +L
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE-----GNLEKFDKSALEGL 254
Query: 304 -NDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDI 362
N E ++ + +D++ C + SL ++T DFS N G L+
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNC-LTNVSSFSLVSVTIERVKDFSYN--FGWQHLE- 310
Query: 363 FLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLD 422
LVN K L L LT TSN + F V L S LE LD
Sbjct: 311 -LVNCKFGQFPTLKLKSLKRLT-FTSNKGGNAFSEVDLPS---------------LEFLD 353
Query: 423 LASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWIC 482
L+ N ++ K D + +L+LS N + +S+N L E
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-----------MSSNFLGLE------ 396
Query: 483 NLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKG-----NIL 537
+LE LD ++NL + FS +LS+ +L + S T G + L
Sbjct: 397 ----QLEHLDFQHSNLKQ-----MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447
Query: 538 KVIDLSDNLLQGR-IPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFH 596
+V+ ++ N Q +P NL FLDL Q+ + P+ +L L VL + SN+
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507
Query: 597 GL 598
+
Sbjct: 508 SV 509
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 135/574 (23%), Positives = 221/574 (38%), Gaps = 98/574 (17%)
Query: 213 RIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASL 272
+IP +L T+ +LDLSFN L + L+ LDL + + + +L+ L
Sbjct: 21 KIPDNLPFSTK--NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78
Query: 273 EQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDV-YECKFS 331
+ L+ N + L+ L L + + G+L++L+ L+V + S
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138
Query: 332 GQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTT 391
++P SNLT+L LD S N I+ + ++L+ + L L L +
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQS-----IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193
Query: 392 SHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSH 451
F+ + L L N L ++ + G L+ +N G+L
Sbjct: 194 PGAFKEIRLHKLTLR------NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE--- 244
Query: 452 NFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLS---NRLESLDLSYNNLSGLLPQCLGN 508
FD+ ++L G +CNL+ RL LD +++ L CL N
Sbjct: 245 ----KFDK-----------SALEG-----LCNLTIEEFRLAYLDYYLDDIIDLF-NCLTN 283
Query: 509 FSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGD 568
S + +L+ I +V D S N G L NC +F L
Sbjct: 284 VSSF-----------------SLVSVTIERVKDFSYNF--GWQHLELVNCKFGQFPTLKL 324
Query: 569 NQIRDI-FPSWLG-------TLPDLNVLILKSN--KFHGLIREPKTDCGFPKLRIIDLSK 618
++ + F S G LP L L L N F G + +D G L+ +DLS
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ--SDFGTTSLKYLDLSF 382
Query: 619 N-------RFTG--KLPSMAFQCWNAMKVVNASELRYMQEVIPFN--------EGNGIYD 661
N F G +L + FQ N ++ S ++ +I + NGI++
Sbjct: 383 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442
Query: 662 --YSL-TMSNKGQMMSYKKIPDI------LTAVILSSNRFDGEIPTSISNLKGLQILSLA 712
SL + G +PDI LT + LS + + PT+ ++L LQ+L++A
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502
Query: 713 DNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQ 746
N L LT L+ + L N + P+
Sbjct: 503 SNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 208 CDLRGRIPSSLGNITRLIHLDLSFNKL-SDELPTFIGTLGSLKELDLLQNNLSGELPNSI 266
C+++ + +++ L L L+ N + S L F G L SL++L ++ NL+ I
Sbjct: 62 CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVETNLASLENFPI 120
Query: 267 GNLASLEQVDLSLNRFLG-KVPSSLGNLTQLHWLSLASN 304
G+L +L++++++ N K+P NLT L L L+SN
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 85/323 (26%), Positives = 132/323 (40%), Gaps = 31/323 (9%)
Query: 293 LTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSS--LSNLTHLSFLDFS 350
L+ L L L N F +F L +L L + +C G + S LT L L
Sbjct: 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137
Query: 351 LNNFSGKMDLDIFLVNHKLLYHLFLSTNRL-SLLTKATSNTTSHRFRAVSLCSCDLTEIP 409
NN K+ F +N + + L L+ N++ S+ + N F + L S L ++
Sbjct: 138 DNNIK-KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMN 196
Query: 410 KF----------LKNQHHLELLDLASNKINGKVPKWLLDP-SMQNFGHLNLSHNFLTGFD 458
++ KN + LDL+ N + K D + L LS+++ G
Sbjct: 197 EYWLGWEKCGNPFKNTS-ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255
Query: 459 -QHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILD 517
H N + N + G S + ++ DLS + + LL +F+D L L
Sbjct: 256 FGHTNFKD--PDNFTFKGLEASGV-------KTCDLSKSKIFALLKSVFSHFTD-LEQLT 305
Query: 518 LQHNKFSGTIPDNLLKG--NILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIF 575
L N+ + I DN G ++LK ++LS N L R N LE LDL N IR +
Sbjct: 306 LAQNEIN-KIDDNAFWGLTHLLK-LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG 363
Query: 576 PSWLGTLPDLNVLILKSNKFHGL 598
LP+L L L +N+ +
Sbjct: 364 DQSFLGLPNLKELALDTNQLKSV 386
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 228 DLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVP 287
DLS +K+ L + L++L L QN ++ N+ L L +++LS N FLG +
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSID 339
Query: 288 SSL-GNLTQLHWLSLASNDFSGELPASFGNLRSLRTL 323
S + NL +L L L+ N SF L +L+ L
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 6/139 (4%)
Query: 661 DYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHI 720
D + SNKG + K IP +T + L N+F +P +SN K L ++ L++N +
Sbjct: 12 DTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLS 70
Query: 721 PSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKT 780
N+T L +L LS NR P+ L L ++ N + +P+G F+
Sbjct: 71 NQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEG----AFNDL 125
Query: 781 SFDGNSGLCGRPLSSECEI 799
S + + PL +C +
Sbjct: 126 SALSHLAIGANPLYCDCNM 144
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%)
Query: 262 LPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLR 321
+P + N L +DLS NR S N+TQL L L+ N P +F L+SLR
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 322 TLDVYECKFSGQIPSSLSNLTHLSFLDFSLN 352
L ++ S + ++L+ LS L N
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 551 IPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPK 610
+P+ L+N +L +DL +N+I + + L LIL N+ + P+T G
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI--PPRTFDGLKS 103
Query: 611 LRIIDLSKNRFTGKLPSMAFQCWNAM 636
LR++ L N + +P AF +A+
Sbjct: 104 LRLLSLHGNDIS-VVPEGAFNDLSAL 128
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 37/88 (42%)
Query: 238 LPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLH 297
+P + L +DL N +S S N+ L + LS NR P + L L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 298 WLSLASNDFSGELPASFGNLRSLRTLDV 325
LSL ND S +F +L +L L +
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAI 133
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 95/371 (25%), Positives = 146/371 (39%), Gaps = 88/371 (23%)
Query: 231 FNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSL 290
FN S+ F G L+ELDL +LS ELP+ + L++L+++ LS N+F S
Sbjct: 267 FNISSNTFHCFSG----LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISA 321
Query: 291 GNLTQLHWLSLASNDFSGEL-PASFGNLRSLRTLDVY--ECKFSGQIPSSLSNLTHLSFL 347
N L LS+ N EL NL +LR LD+ + + S L NL+HL L
Sbjct: 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL 381
Query: 348 DFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTE 407
+ S N LSL T+A ++ + +
Sbjct: 382 NLSYN-------------------------EPLSLKTEAFKECPQLELLDLAFTRLKVKD 416
Query: 408 IPKFLKNQHHLELLDLASNKINGKVPKWLLD--PSMQNFGHLNLSHN-FLTGFDQHPNTV 464
+N H L++L+L+ + ++ + L D P++Q HLNL N F G Q N++
Sbjct: 417 AQSPFQNLHLLKVLNLSHSLLDIS-SEQLFDGLPALQ---HLNLQGNHFPKGNIQKTNSL 472
Query: 465 NYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFS 524
L RLE L LS+ +LS + + ++ +DL HN+ +
Sbjct: 473 QTL------------------GRLEILVLSFCDLSSIDQHAFTSLK-MMNHVDLSHNRLT 513
Query: 525 GTIPDNL--LKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTL 582
+ + L LKG +L+L N I I PS L L
Sbjct: 514 SSSIEALSHLKG---------------------------IYLNLASNHISIILPSLLPIL 546
Query: 583 PDLNVLILKSN 593
+ L+ N
Sbjct: 547 SQQRTINLRQN 557
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 125/291 (42%), Gaps = 51/291 (17%)
Query: 488 LESLDLSYNNLSGL-LPQCLGNFSDWLSILDLQHNKFSGTIPDNL--LKGNILKVIDLSD 544
LESL L N++S + LP+ G ++ L +LD Q+N +++ L+ ++L+
Sbjct: 131 LESLYLGSNHISSIKLPK--GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188
Query: 545 NLLQGRIPRSLANCSNLEFLDLGDNQ-IRDIFPS---------WLGTLPDLNVLILKSNK 594
N + G P + + + + L+ G Q + IF WLGT D++ +
Sbjct: 189 NDIAGIEPGAF-DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247
Query: 595 FHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFN 654
F GL + I+L K+ F + S F C++
Sbjct: 248 FEGLCEM--------SVESINLQKHYFFN-ISSNTFHCFS-------------------- 278
Query: 655 EGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADN 714
G+ + LT ++ ++ S L ++LS+N+F+ S SN L LS+ N
Sbjct: 279 ---GLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335
Query: 715 SLHGHIPS-CLGNLTDLESLDLSNNRF--SGQIPQQLVELTFLEFFNVSDN 762
+ + + CL NL +L LDLS++ S QL L+ L+ N+S N
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 138/344 (40%), Gaps = 52/344 (15%)
Query: 488 LESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLL 547
L+ LDL+ +LS L P L S L L L NKF +NL + + L+ +
Sbjct: 280 LQELDLTATHLSEL-PSGLVGLST-LKKLVLSANKF-----ENLCQISASNFPSLTHLSI 332
Query: 548 QGRIPR------SLANCSNLEFLDLGDNQIR--DIFPSWLGTLPDLNVLILKSNKFHGLI 599
+G R L N NL LDL + I D L L L L L N+ L
Sbjct: 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392
Query: 600 REPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGI 659
E +C P+L ++DL+ R K FQ + +KV+N S
Sbjct: 393 TEAFKEC--PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS----------------- 433
Query: 660 YDYSLTMSNKGQMMSYKKIPDILTAVILSSNRF-DGEI--PTSISNLKGLQILSLADNSL 716
+SL + Q+ + +P L + L N F G I S+ L L+IL L+ L
Sbjct: 434 --HSLLDISSEQL--FDGLP-ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488
Query: 717 HGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFAT 776
+L + +DLS+NR + + L L + + N++ NH + +P +
Sbjct: 489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILS 547
Query: 777 FDKTSFDGNSGLCGRPLSSECE----ISEAPTNEDQIEDSEESL 816
+T L PL C + N ++ED+E++L
Sbjct: 548 QQRT-----INLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTL 586
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 83/205 (40%), Gaps = 40/205 (19%)
Query: 578 WLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMK 637
WLGT D++ + S GL + ++L ++RF+ + S FQC+ ++
Sbjct: 228 WLGTFEDIDDEDISSAMLKGLCEM--------SVESLNLQEHRFS-DISSTTFQCFTQLQ 278
Query: 638 VVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIP 697
+ LT ++ + S K ++L ++LS N FD
Sbjct: 279 -----------------------ELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQ 315
Query: 698 TSISNLKGLQILSLADNSLHGHI-PSCLGNLTDLESLDLSNNRFSGQ--IPQQLVELTFL 754
S +N L L + N H+ CL L +L++LDLS+N QL L+ L
Sbjct: 316 ISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHL 375
Query: 755 EFFNVSDNHFTGPIPQGKQFATFDK 779
+ N+S N P G Q F +
Sbjct: 376 QTLNLSHNE-----PLGLQSQAFKE 395
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 124/289 (42%), Gaps = 47/289 (16%)
Query: 487 RLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNL 546
+L+ LDL+ +L GL P + + L L L N F D L + + L+
Sbjct: 276 QLQELDLTATHLKGL-PSGMKGL-NLLKKLVLSVNHF-----DQLCQISAANFPSLTHLY 328
Query: 547 LQGRIPR------SLANCSNLEFLDLGDNQIR--DIFPSWLGTLPDLNVLILKSNKFHGL 598
++G + + L NL+ LDL N I D L L L L L N+ GL
Sbjct: 329 IRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGL 388
Query: 599 IREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASEL------RYMQEVIP 652
+ +C P+L ++DL+ R P FQ + ++V+N + +++ +P
Sbjct: 389 QSQAFKEC--PQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLP 446
Query: 653 F-----NEGNGIYDYSLTMSNKGQMMSYKKIPDI------------------LTAVILSS 689
+GN D ++T +N Q + ++ + ++ V LS
Sbjct: 447 VLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSH 506
Query: 690 NRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNN 738
N + S+S+LKG+ L+LA NS++ P L L+ +++LS+N
Sbjct: 507 NSLTCDSIDSLSHLKGI-YLNLAANSINIISPRLLPILSQQSTINLSHN 554
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 104/252 (41%), Gaps = 29/252 (11%)
Query: 537 LKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFH 596
L+V+ SD L+ ++P+ L + LDL +N+I +I L +L+ LIL +NK
Sbjct: 33 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89
Query: 597 GLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKV-------VNASELRYMQE 649
+ P KL + LSKN+ +LP + ++V V S + +
Sbjct: 90 KI--SPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQ 146
Query: 650 VIPFNEGNGIYDYSLTMSNKGQMM---SYKKIPDI------------LTAVILSSNRFDG 694
+I G S + Q M SY +I D LT + L N+
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITK 206
Query: 695 EIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFL 754
S+ L L L L+ NS+ L N L L L+NN+ ++P L + ++
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI 265
Query: 755 EFFNVSDNHFTG 766
+ + +N+ +
Sbjct: 266 QVVYLHNNNISA 277
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 101/239 (42%), Gaps = 27/239 (11%)
Query: 213 RIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASL 272
++P L T L LDL NK+++ L +L L L+ N +S P + L L
Sbjct: 45 KVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102
Query: 273 EQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDV--YECKF 330
E++ LS N+ L ++P + L L + N+ + + F L + +++ K
Sbjct: 103 ERLYLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159
Query: 331 SGQIPSSLSNLTHLSFLDFSLNNFSGKMD------LDIFLVNHKL-------------LY 371
SG + + LS++ + N + ++ L +K+ L
Sbjct: 160 SGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLA 219
Query: 372 HLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKING 430
L LS N +S + + T H R + L + L ++P L + +++++ L +N I+
Sbjct: 220 KLGLSFNSISAVDNGSLANTPH-LRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 277
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 104/252 (41%), Gaps = 29/252 (11%)
Query: 537 LKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFH 596
L+V+ SD L+ ++P+ L + LDL +N+I +I L +L+ LIL +NK
Sbjct: 33 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89
Query: 597 GLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKV-------VNASELRYMQE 649
+ P KL + LSKN+ +LP + ++V V S + +
Sbjct: 90 KI--SPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQ 146
Query: 650 VIPFNEGNGIYDYSLTMSNKGQMM---SYKKIPDI------------LTAVILSSNRFDG 694
+I G S + Q M SY +I D LT + L N+
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITK 206
Query: 695 EIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFL 754
S+ L L L L+ NS+ L N L L L+NN+ ++P L + ++
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI 265
Query: 755 EFFNVSDNHFTG 766
+ + +N+ +
Sbjct: 266 QVVYLHNNNISA 277
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 101/239 (42%), Gaps = 27/239 (11%)
Query: 213 RIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASL 272
++P L T L LDL NK+++ L +L L L+ N +S P + L L
Sbjct: 45 KVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102
Query: 273 EQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDV--YECKF 330
E++ LS N+ L ++P + L L + N+ + + F L + +++ K
Sbjct: 103 ERLYLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159
Query: 331 SGQIPSSLSNLTHLSFLDFSLNNFSGKMD------LDIFLVNHKL-------------LY 371
SG + + LS++ + N + ++ L +K+ L
Sbjct: 160 SGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLA 219
Query: 372 HLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKING 430
L LS N +S + + T H R + L + L ++P L + +++++ L +N I+
Sbjct: 220 KLGLSFNSISAVDNGSLANTPH-LRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 277
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 16/166 (9%)
Query: 218 LGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDL 277
+ N+T L L L++N++ D P + +L SL N ++ P + N L + +
Sbjct: 173 IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANXTRLNSLKI 228
Query: 278 SLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSS 337
N+ P L NL+QL WL + +N S + +L L+ L+V + S S
Sbjct: 229 GNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKXLNVGSNQISD--ISV 282
Query: 338 LSNLTHLSFLDFSLNNFSGKMDLDIF--LVNHKLLYHLFLSTNRLS 381
L+NL+ L+ L F NN G D ++ L N L LFLS N ++
Sbjct: 283 LNNLSQLNSL-FLNNNQLGNEDXEVIGGLTN---LTTLFLSQNHIT 324
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 87/219 (39%), Gaps = 45/219 (20%)
Query: 555 LANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRII 614
L+N + L +L + +++++D+ P + L DL L L N+ I + L
Sbjct: 151 LSNXTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ----IEDISPLASLTSLHYF 204
Query: 615 DLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQM-- 672
N+ T P N++K+ N N I D S ++N Q+
Sbjct: 205 TAYVNQITDITPVANXTRLNSLKIGN----------------NKITDLS-PLANLSQLTW 247
Query: 673 --MSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDL 730
+ +I DI ++ +L L+ L++ N + S L NL+ L
Sbjct: 248 LEIGTNQISDI----------------NAVKDLTKLKXLNVGSNQISD--ISVLNNLSQL 289
Query: 731 ESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIP 769
SL L+NN+ + + + LT L +S NH T P
Sbjct: 290 NSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 254 LQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPAS 313
L N ELP I NL++L +DLS NR L +P+ LG+ QL + N LP
Sbjct: 254 LNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDN-MVTTLPWE 311
Query: 314 FGNLRSLRTLDV 325
FGNL +L+ L V
Sbjct: 312 FGNLCNLQFLGV 323
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 213 RIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASL 272
+P+ + N++ L LDLS N+L+ LP +G+ LK +N+ LP GNL +L
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFF-DNMVTTLPWEFGNLCNL 318
Query: 273 E 273
+
Sbjct: 319 Q 319
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 224 LIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFL 283
L L L+ N L+ ELP I L +L+ LDL N L+ LP +G+ L+ + +
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYF-FDNMV 305
Query: 284 GKVPSSLGNLTQLHWLSLASN 304
+P GNL L +L + N
Sbjct: 306 TTLPWEFGNLCNLQFLGVEGN 326
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 666 MSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLG 725
+ N+ M K D L + SN I +I L L L NSL +P+ +
Sbjct: 209 IENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSL-TELPAEIK 267
Query: 726 NLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFT 765
NL++L LDLS+NR + +P +L L++F DN T
Sbjct: 268 NLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT 306
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 102/249 (40%), Gaps = 46/249 (18%)
Query: 214 IPSSLGNITRLIHLDLSFNKL----SDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNL 269
+P + TRL LDL N++ DE +F L+EL+L +N +S P + NL
Sbjct: 26 VPEGIPTETRL--LDLGKNRIKTLNQDEFASF----PHLEELELNENIVSAVEPGAFNNL 79
Query: 270 ASLEQVDLSLNRF----LGKVPSSLGNLTQ---------------------LHWLSLASN 304
+L + L NR LG V + L NLT+ L L + N
Sbjct: 80 FNLRTLGLRSNRLKLIPLG-VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138
Query: 305 DFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFL 364
D +F L SL L + +C + +LS+L L L N + D
Sbjct: 139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF-- 196
Query: 365 VNHKLLYHL-FLSTNRLSLLTKATSNT-TSHRFRAVSLCSCDLTEIPKFLKNQH--HLEL 420
K LY L L + L T N ++S+ C+LT +P +L +H +L
Sbjct: 197 ---KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP-YLAVRHLVYLRF 252
Query: 421 LDLASNKIN 429
L+L+ N I+
Sbjct: 253 LNLSYNPIS 261
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 81/324 (25%), Positives = 136/324 (41%), Gaps = 35/324 (10%)
Query: 275 VDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQI 334
+DL NR + L L L N S P +F NL +LRTL + +
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96
Query: 335 PSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLT-KATSNTTSH 393
+ L++L+ LD S N + LD + L L + N L ++ +A S S
Sbjct: 97 LGVFTGLSNLTKLDISENKIV--ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS- 153
Query: 394 RFRAVSLCSCDLTEIP-KFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHN 452
++L C+LT IP + L + H L +L L IN + D S + L +
Sbjct: 154 -LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA-----IRDYSFKRLYRLKVLE- 206
Query: 453 FLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDW 512
+++ +++T P+ + L+ L SL +++ NL+ + P +
Sbjct: 207 -----------ISHWPYLDTMT---PNCLYGLN--LTSLSITHCNLTAV-PYLAVRHLVY 249
Query: 513 LSILDLQHNKFS---GTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDN 569
L L+L +N S G++ LL+ L+ I L L P + + L L++ N
Sbjct: 250 LRFLNLSYNPISTIEGSMLHELLR---LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306
Query: 570 QIRDIFPSWLGTLPDLNVLILKSN 593
Q+ + S ++ +L LIL SN
Sbjct: 307 QLTTLEESVFHSVGNLETLILDSN 330
Score = 37.0 bits (84), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 115/281 (40%), Gaps = 32/281 (11%)
Query: 488 LESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKG--NILKVIDLSDN 545
LE L+L+ N +S + P N + L L L+ N+ IP + G N+ K +D+S+N
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFN-LRTLGLRSNRLK-LIPLGVFTGLSNLTK-LDISEN 114
Query: 546 LLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTD 605
+ + + NL+ L++GDN + I L L L L+ + E +
Sbjct: 115 KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH 174
Query: 606 C-GFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSL 664
G LR+ L+ N + +F+ +KV+ S Y+ + P N +Y +L
Sbjct: 175 LHGLIVLRLRHLNIN----AIRDYSFKRLYRLKVLEISHWPYLDTMTP----NCLYGLNL 226
Query: 665 TMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCL 724
T S LTAV ++ +L L+ L+L+ N + S L
Sbjct: 227 T--------SLSITHCNLTAVPY----------LAVRHLVYLRFLNLSYNPISTIEGSML 268
Query: 725 GNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFT 765
L L+ + L + + P L +L NVS N T
Sbjct: 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 57/141 (40%), Gaps = 2/141 (1%)
Query: 208 CDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIG 267
C +GR G + +LDL N L L SL +L L N L LPN +
Sbjct: 14 CYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVF 72
Query: 268 N-LASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVY 326
N L SL ++LS N+ LTQL L+L +N F L L+ L +Y
Sbjct: 73 NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLY 132
Query: 327 ECKFSGQIPSSLSNLTHLSFL 347
+ + LT L ++
Sbjct: 133 QNQLKSVPDGVFDRLTSLQYI 153
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 112/467 (23%), Positives = 185/467 (39%), Gaps = 110/467 (23%)
Query: 213 RIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASL 272
++P+ N+T L+H+DLS+N +I T+ ++ +L L+ N
Sbjct: 139 KLPAYFSNLTNLVHVDLSYN--------YIQTI-TVNDLQFLREN--------------- 174
Query: 273 EQVDLSLNRFLGKVPSSLGNLTQ---LHWLSLASNDFSGELPAS--------------FG 315
QV+LSL+ L + Q LH L+L N S + + G
Sbjct: 175 PQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 234
Query: 316 NLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSL---NNFSGKMDLDIFLVNHKLLYH 372
+ R L+++E PS + L ++ +F L N+FS + + +H
Sbjct: 235 EFKDERNLEIFE-------PSIMEGLCDVTIDEFRLTYTNDFSDDI----------VKFH 277
Query: 373 LFLSTNRLSLL---TKATSNTTSH-RFRAVSLCSCDLTEIPK----FLKNQHHLELLDLA 424
+ + +SL K + H +++++S+ C L + P FLK+ L L
Sbjct: 278 CLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKS------LTLT 331
Query: 425 SNKINGKVPKWLLDPSMQNFGHLNLSHNFL------TGFDQHPNTVNYLVSNNSLTGEIP 478
NK + K L PS+ +L+LS N L + D N++ +L + S G I
Sbjct: 332 MNKGSISFKKVAL-PSL---SYLDLSRNALSFSGCCSYSDLGTNSLRHL--DLSFNGAII 385
Query: 479 SWICNLS-NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNIL 537
+ L+ LD ++ L + FS +LS+ L + S T G L
Sbjct: 386 MSANFMGLEELQHLDFQHSTLKR-----VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 440
Query: 538 KVIDLSDNLLQGR------IPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDL------ 585
+ L+ + G + AN +NL FLDL Q+ I TL L
Sbjct: 441 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 500
Query: 586 --NVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAF 630
N+L L S+ ++ L DC F + I+ SK S+AF
Sbjct: 501 HNNLLFLDSSHYNQLYSLSTLDCSFNR---IETSKGILQHFPKSLAF 544
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Query: 214 IPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLE 273
IPSS NI DLSFN L L+ LDL + + + L L
Sbjct: 25 IPSSTKNI------DLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 78
Query: 274 QVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDV-YECKFSG 332
+ L+ N P S LT L L + G L +L+ L+V + S
Sbjct: 79 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC 138
Query: 333 QIPSSLSNLTHLSFLDFSLN 352
++P+ SNLT+L +D S N
Sbjct: 139 KLPAYFSNLTNLVHVDLSYN 158
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 73/300 (24%), Positives = 119/300 (39%), Gaps = 40/300 (13%)
Query: 489 ESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKG-NILKVIDLSDNLL 547
+++DLS+N L L NFS+ L LDL + TI D G + L + L+ N +
Sbjct: 30 KNIDLSFNPLKILKSYSFSNFSE-LQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPI 87
Query: 548 QGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCG 607
Q P S + ++LE L + ++ + +G L L L + N H + P
Sbjct: 88 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS-CKLPAYFSN 146
Query: 608 FPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMS 667
L +DLS +N ++ + ++L++++E N D SL
Sbjct: 147 LTNLVHVDLS---------------YNYIQTITVNDLQFLRENPQVNLS---LDMSLNPI 188
Query: 668 NKGQMMSYKKIPDILTAVILSSNRFDGEI-PTSISNLKGLQILSLADNSLHGHIPSCLGN 726
+ Q +++ I L + L N I T + NL GL + L LG
Sbjct: 189 DFIQDQAFQGIK--LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI-----------LGE 235
Query: 727 LTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNS 786
D +L++ F I + L ++T EF N F+ I + A S G S
Sbjct: 236 FKDERNLEI----FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS 291
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%)
Query: 267 GNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVY 326
G L L +++L N+ G P++ + + L L N F L L+TL++Y
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110
Query: 327 ECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIF 363
+ + S +P S +L L+ L+ + N F+ L F
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF 147
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 212 GRIPSS--LGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIG-N 268
GRI S G + L+ L+L N+L+ P ++EL L +N + E+ N +
Sbjct: 42 GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLG 100
Query: 269 LASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFS 307
L L+ ++L N+ +P S +L L L+LASN F+
Sbjct: 101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 493 LSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIP 552
+S + L G LP L L+L+ N+ +G P+ + ++ + L +N ++
Sbjct: 44 ISSDGLFGRLPH--------LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN 95
Query: 553 RSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKF 595
+ L+ L+L DNQI + P L L L L SN F
Sbjct: 96 KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%)
Query: 210 LRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNL 269
L G P++ + + L L NK+ + L LK L+L N +S +P S +L
Sbjct: 66 LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125
Query: 270 ASLEQVDLSLNRF 282
SL ++L+ N F
Sbjct: 126 NSLTSLNLASNPF 138
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 112/467 (23%), Positives = 185/467 (39%), Gaps = 110/467 (23%)
Query: 213 RIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASL 272
++P+ N+T L+H+DLS+N +I T+ ++ +L L+ N
Sbjct: 144 KLPAYFSNLTNLVHVDLSYN--------YIQTI-TVNDLQFLREN--------------- 179
Query: 273 EQVDLSLNRFLGKVPSSLGNLTQ---LHWLSLASNDFSGELPAS--------------FG 315
QV+LSL+ L + Q LH L+L N S + + G
Sbjct: 180 PQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239
Query: 316 NLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSL---NNFSGKMDLDIFLVNHKLLYH 372
+ R L+++E PS + L ++ +F L N+FS + + +H
Sbjct: 240 EFKDERNLEIFE-------PSIMEGLCDVTIDEFRLTYTNDFSDDI----------VKFH 282
Query: 373 LFLSTNRLSLL---TKATSNTTSH-RFRAVSLCSCDLTEIPK----FLKNQHHLELLDLA 424
+ + +SL K + H +++++S+ C L + P FLK+ L L
Sbjct: 283 CLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKS------LTLT 336
Query: 425 SNKINGKVPKWLLDPSMQNFGHLNLSHNFL------TGFDQHPNTVNYLVSNNSLTGEIP 478
NK + K L PS+ +L+LS N L + D N++ +L + S G I
Sbjct: 337 MNKGSISFKKVAL-PSL---SYLDLSRNALSFSGCCSYSDLGTNSLRHL--DLSFNGAII 390
Query: 479 SWICNLS-NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNIL 537
+ L+ LD ++ L + FS +LS+ L + S T G L
Sbjct: 391 MSANFMGLEELQHLDFQHSTLKR-----VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445
Query: 538 KVIDLSDNLLQGR------IPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDL------ 585
+ L+ + G + AN +NL FLDL Q+ I TL L
Sbjct: 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505
Query: 586 --NVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAF 630
N+L L S+ ++ L DC F + I+ SK S+AF
Sbjct: 506 HNNLLFLDSSHYNQLYSLSTLDCSFNR---IETSKGILQHFPKSLAF 549
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Query: 214 IPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLE 273
IPSS NI DLSFN L L+ LDL + + + L L
Sbjct: 30 IPSSTKNI------DLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 83
Query: 274 QVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDV-YECKFSG 332
+ L+ N P S LT L L + G L +L+ L+V + S
Sbjct: 84 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC 143
Query: 333 QIPSSLSNLTHLSFLDFSLN 352
++P+ SNLT+L +D S N
Sbjct: 144 KLPAYFSNLTNLVHVDLSYN 163
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 73/300 (24%), Positives = 119/300 (39%), Gaps = 40/300 (13%)
Query: 489 ESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKG-NILKVIDLSDNLL 547
+++DLS+N L L NFS+ L LDL + TI D G + L + L+ N +
Sbjct: 35 KNIDLSFNPLKILKSYSFSNFSE-LQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPI 92
Query: 548 QGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCG 607
Q P S + ++LE L + ++ + +G L L L + N H + P
Sbjct: 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS-CKLPAYFSN 151
Query: 608 FPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMS 667
L +DLS +N ++ + ++L++++E N D SL
Sbjct: 152 LTNLVHVDLS---------------YNYIQTITVNDLQFLRENPQVNLS---LDMSLNPI 193
Query: 668 NKGQMMSYKKIPDILTAVILSSNRFDGEI-PTSISNLKGLQILSLADNSLHGHIPSCLGN 726
+ Q +++ I L + L N I T + NL GL + L LG
Sbjct: 194 DFIQDQAFQGIK--LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI-----------LGE 240
Query: 727 LTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNS 786
D +L++ F I + L ++T EF N F+ I + A S G S
Sbjct: 241 FKDERNLEI----FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS 296
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 104/236 (44%), Gaps = 17/236 (7%)
Query: 385 KATSNTTSHRFRAVSLCSCDLTEIPKF-LKNQHHLELLDLASNKINGKVPKWLLDPSMQN 443
KA S + L + D++E+ K K HL L L +NKI+ K+ + P ++
Sbjct: 46 KAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSP-LRK 103
Query: 444 FGHLNLSHNFLTGFDQH-PNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNL--SG 500
L +S N L + P+++ L +++ ++P + + + +++ N L SG
Sbjct: 104 LQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG 163
Query: 501 LLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSN 560
P L+ L + K +G IP +L + L + L N +Q L S
Sbjct: 164 FEPGAFDGLK--LNYLRISEAKLTG-IPKDLPE--TLNELHLDHNKIQAIELEDLLRYSK 218
Query: 561 LEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDL 616
L L LG NQIR I L LP L L L +NK L R P G P L+++ +
Sbjct: 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK---LSRVP---AGLPDLKLLQV 268
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 94/211 (44%), Gaps = 14/211 (6%)
Query: 221 ITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLN 280
+ L L L NK+S L L++L + +N+L PN +L L D N
Sbjct: 77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHD---N 133
Query: 281 RFLGKVPSSL-GNLTQLHWLSLASNDF--SGELPASFGNLRSLRTLDVYECKFSGQIPSS 337
R + KVP + L ++ + + N SG P +F L+ L L + E K +G IP
Sbjct: 134 R-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTG-IPKD 190
Query: 338 LSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRA 397
L + LD +N ++L+ L K LY L L N++ ++ + + R
Sbjct: 191 LPETLNELHLD---HNKIQAIELEDLLRYSK-LYRLGLGHNQIRMIENGSLSFLP-TLRE 245
Query: 398 VSLCSCDLTEIPKFLKNQHHLELLDLASNKI 428
+ L + L+ +P L + L+++ L +N I
Sbjct: 246 LHLDNNKLSRVPAGLPDLKLLQVVYLHTNNI 276
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 121/561 (21%), Positives = 190/561 (33%), Gaps = 135/561 (24%)
Query: 313 SFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYH 372
+F NL +LR LD+ K P + L HL L S + D + N K L
Sbjct: 68 AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127
Query: 373 LFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLE--------LLDLA 424
L LS N++ L S + SL S D + FL +H LE LA
Sbjct: 128 LDLSKNQIRSLYLHPSFG-----KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182
Query: 425 SNKINGKVP-----------------------KWLLDPSMQNFGHLNLSHNFLTGFDQHP 461
+N + +V W +D + ++ S F H
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242
Query: 462 NTVNYLVSN------NSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSI 515
+ N N+ G S + LDLS+ + L + D L +
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSV-------RHLDLSHGFVFSLNSRVFETLKD-LKV 294
Query: 516 LDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIF 575
L+L +NK + + + L+V++LS NLL + + ++DL N I
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA--- 351
Query: 576 PSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGK--LPSMAFQCW 633
I++ F L KL+ +DL N T +PS+
Sbjct: 352 -------------IIQDQTFKFL----------EKLQTLDLRDNALTTIHFIPSIPDIFL 388
Query: 634 NAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFD 693
+ K+V ++ +I +E + N + ++P L +IL+ NRF
Sbjct: 389 SGNKLVTLPKINLTANLIHLSENR--------LENLDILYFLLRVPH-LQILILNQNRFS 439
Query: 694 G----EIPTS--------------------------ISNLKGLQILSLADNSLHGHIPSC 723
+ P+ L LQ+L L N L+ P
Sbjct: 440 SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV 499
Query: 724 LGNLTDLESLDLSNNRFS----GQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDK 779
+LT L L L++NR + +P LE ++S N P P F +
Sbjct: 500 FSHLTALRGLSLNSNRLTVLSHNDLPAN------LEILDISRNQLLAPNPD--VFVSLSV 551
Query: 780 TSFDGNSGLCGRPLSSECEIS 800
N +C ECE+S
Sbjct: 552 LDITHNKFIC------ECELS 566
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 128/325 (39%), Gaps = 62/325 (19%)
Query: 226 HLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGK 285
HLDLS + TL LK L+L N ++ + L +L+ ++LS N LG+
Sbjct: 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGE 328
Query: 286 VPSS-LGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYE-----CKFSGQIPSSL- 338
+ SS L ++ ++ L N + +F L L+TLD+ + F IP
Sbjct: 329 LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFL 388
Query: 339 --------------SNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLT 384
+NL HLS N +D+ FL+ L L L+ NR S +
Sbjct: 389 SGNKLVTLPKINLTANLIHLS------ENRLENLDILYFLLRVPHLQILILNQNRFSSCS 442
Query: 385 KATSNTTSHRFRAVSLCSCDL-----TEIP-KFLKNQHHLELLDLASNKINGKVPKWLLD 438
+ + + + L L TE+ + HL++L L N +N L
Sbjct: 443 GDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS------LP 496
Query: 439 PSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNL 498
P + F HL L G + N + L N+ L LE LD+S N L
Sbjct: 497 PGV--FSHLTA----LRGLSLNSNRLTVLSHND------------LPANLEILDISRNQL 538
Query: 499 SGLLPQCLGNFSDWLSILDLQHNKF 523
P + LS+LD+ HNKF
Sbjct: 539 LAPNPDVFVS----LSVLDITHNKF 559
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 55/110 (50%), Gaps = 3/110 (2%)
Query: 219 GNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLS 278
G + L LDLS N+L LP TL +L LD+ N L+ ++ L L+++ L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 279 LNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGN-LRSLRTLDVYE 327
N P L +L LSLA+ND + ELPA N L +L TL + E
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPAGLLNGLENLDTLLLQE 181
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 60/142 (42%), Gaps = 2/142 (1%)
Query: 491 LDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGR 550
LDLS+NNLS L + L L L HN + + + L+ +DLS N L
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103
Query: 551 IPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCG-FP 609
++ LE L L +N I + + + L L L N+ E D P
Sbjct: 104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP 163
Query: 610 KLRIIDLSKNRFTGKLPSMAFQ 631
KL ++DLS N+ KLP Q
Sbjct: 164 KLMLLDLSSNKLK-KLPLTDLQ 184
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 2/133 (1%)
Query: 216 SSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSI-GNLASLEQ 274
S+L +T L +L L+ N+L L +LKEL L++N L LP+ + L +L
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTY 137
Query: 275 VDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQI 334
++L+ N+ LT L L L+ N F L L+ L +Y+ +
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197
Query: 335 PSSLSNLTHLSFL 347
LT L ++
Sbjct: 198 DGVFDRLTSLQYI 210
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 82/204 (40%), Gaps = 44/204 (21%)
Query: 137 SEILELSKLAYLDLSHNSYYDPVELRKPSLGN-LADKLTNLKELVLGDVTISSPIPHNXX 195
S + EL+ L YL L+ N SL N + DKLTNLKELVL + + S
Sbjct: 79 SALKELTNLTYLILTGNQLQ--------SLPNGVFDKLTNLKELVLVENQLQS------- 123
Query: 196 XXXXXXXXXXXGCDLRGRIPSSL-GNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLL 254
+P + +T L +L+L+ N+L L +L ELDL
Sbjct: 124 ------------------LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS 165
Query: 255 QNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSL-GNLTQLHWLSLASNDFSGELPAS 313
N L L L+ + L N+ L VP + LT L ++ L N + P
Sbjct: 166 YNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG- 223
Query: 314 FGNLRSLRTLDVYECKFSGQIPSS 337
+R L + K SG + +S
Sbjct: 224 ------IRYLSEWINKHSGVVRNS 241
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 87/357 (24%), Positives = 138/357 (38%), Gaps = 47/357 (13%)
Query: 261 ELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSL 320
+LP + L + ++++ NR + G + W +LA ++ + +L
Sbjct: 264 KLPTFLKALPEXQLINVACNRGIS------GEQLKDDWQALADAPVGEKIQIIYIGYNNL 317
Query: 321 RTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRL 380
+T V +SL L L+ N GK L F KL L L+ N++
Sbjct: 318 KTFPV---------ETSLQKXKKLGXLECLYNQLEGK--LPAFGSEIKLA-SLNLAYNQI 365
Query: 381 SLLTKATSNTTSHRFRAVSLCSCDLTEIPKFL--KNQHHLELLDLASNKINGKVPKWLLD 438
+ + T + +S L IP K+ +D + N+I G V D
Sbjct: 366 TEIPANFCGFT-EQVENLSFAHNKLKYIPNIFDAKSVSVXSAIDFSYNEI-GSVDGKNFD 423
Query: 439 P------SMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTG----EIPSWICNLSNR- 487
P N +NLS+N ++ F + + +S+ +L G EIP N
Sbjct: 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLXGNXLTEIPKNSLKDENEN 483
Query: 488 ------LESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSG--TIPDN--LLKG-NI 536
L S+DL +N L+ L +L +DL +N FS T P N LKG I
Sbjct: 484 FKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGI 543
Query: 537 LKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSN 593
D N P + C +L L +G N IR + P+++VL +K N
Sbjct: 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK---ITPNISVLDIKDN 597
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 122/298 (40%), Gaps = 65/298 (21%)
Query: 222 TRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNR 281
T L LDLS+N L D L SL+ L L NN+ P S L++L LSL R
Sbjct: 248 TNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRY--LSLKR 305
Query: 282 FLGKVPSSLGN-----------LTQLHWLSL--------ASNDFSG-------ELPASFG 315
K SL + L L +L++ SN F+G L +F
Sbjct: 306 AFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFT 365
Query: 316 NLRSLR-------------TLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMD--- 359
+L++L TL++ + S + S L L LD LN K+
Sbjct: 366 SLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQE 425
Query: 360 -------LDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFL 412
+I+L +K +L LST+ +L+ R V+L + D++ P
Sbjct: 426 WRGLRNIFEIYLSYNK---YLQLSTSSFALVPSL----QRLMLRRVALKNVDISPSP--F 476
Query: 413 KNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPN---TVNYL 467
+ +L +LDL++N I + + LL+ ++N L+ HN L + N VN+L
Sbjct: 477 RPLRNLTILDLSNNNI-ANINEDLLE-GLENLEILDFQHNNLARLWKRANPGGPVNFL 532
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 3/110 (2%)
Query: 219 GNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLS 278
G + L LDLS N+L LP TL +L LD+ N L+ ++ L L+++ L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 279 LNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGN-LRSLRTLDVYE 327
N P L +L LSLA+N+ + ELPA N L +L TL + E
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE 181
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 3/110 (2%)
Query: 219 GNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLS 278
G + L LDLS N+L LP TL +L LD+ N L+ ++ L L+++ L
Sbjct: 75 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 133
Query: 279 LNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGN-LRSLRTLDVYE 327
N P L +L LSLA+N+ + ELPA N L +L TL + E
Sbjct: 134 GNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE 182
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 3/110 (2%)
Query: 219 GNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLS 278
G + L LDLS N+L LP TL +L LD+ N L+ ++ L L+++ L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 279 LNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGN-LRSLRTLDVYE 327
N P L +L LSLA+N+ + ELPA N L +L TL + E
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE 181
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 219 GNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLS 278
G + L LDLS N+L LP TL +L LD+ N L+ ++ L L+++ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 279 LNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGN-LRSLRTLDVYE 327
N P L +L LSLA+N + ELPA N L +L TL + E
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQE 181
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 3/110 (2%)
Query: 219 GNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLS 278
G + L LDLS N+L LP TL +L LD+ N L+ ++ L L+++ L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 279 LNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGN-LRSLRTLDVYE 327
N P L +L LSLA+N+ + ELPA N L +L TL + E
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE 181
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 3/110 (2%)
Query: 219 GNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLS 278
G + L LDLS N+L LP TL +L LD+ N L+ ++ L L+++ L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 279 LNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGN-LRSLRTLDVYE 327
N P L +L LSLA+N+ + ELPA N L +L TL + E
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE 181
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 219 GNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLS 278
G + L LDLS N+L LP TL +L LD+ N L+ ++ L L+++ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 279 LNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGN-LRSLRTLDVYE 327
N P L +L LSLA+N + ELPA N L +L TL + E
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQE 181
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 219 GNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLS 278
G + L LDLS N+L LP TL +L LD+ N L+ ++ L L+++ L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 279 LNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGN-LRSLRTLDVYE 327
N P L +L LSLA+N + ELPA N L +L TL + E
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQE 181
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 219 GNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLS 278
G + L LDLS N+L LP TL +L LD+ N L+ ++ L L+++ L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 279 LNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGN-LRSLRTLDVYE 327
N P L +L LSLA+N + ELPA N L +L TL + E
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQE 181
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 53/135 (39%)
Query: 221 ITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLN 280
+T+L L L+ NKL L +L+ L + N L L +L ++ L N
Sbjct: 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119
Query: 281 RFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSN 340
+ P +LT+L +LSL N+ F L SL+ L +Y + +
Sbjct: 120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK 179
Query: 341 LTHLSFLDFSLNNFS 355
LT L L N
Sbjct: 180 LTELKTLKLDNNQLK 194
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 210 LRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNL 269
L+ P ++T+L +L L +N+L L SLKEL L N L + L
Sbjct: 121 LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL 180
Query: 270 ASLEQVDLSLNRFLGKVPS-SLGNLTQLHWLSLASN 304
L+ + L N+ L +VP + +L +L L L N
Sbjct: 181 TELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQEN 215
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 17/176 (9%)
Query: 612 RIIDLSKNRFTGKLPSMAFQCWNAMKVV--NASELRYMQEVIPFNEGNGIYDYSLTMSNK 669
+ +DL N+ + LPS AF ++++ N ++L+ + I F E + +T NK
Sbjct: 40 KKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPAGI-FKELKNLETLWVT-DNK 96
Query: 670 GQMMSYKKIPDI--LTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNL 727
Q + + L + L N+ P +L L LSL N L L
Sbjct: 97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156
Query: 728 TDLESLDLSNNRFSGQIPQ----QLVELTFLEFFNVSDNHFTGPIPQGKQFATFDK 779
T L+ L L NN+ ++P+ +L EL L+ DN+ +P+G F + +K
Sbjct: 157 TSLKELRLYNNQLK-RVPEGAFDKLTELKTLKL----DNNQLKRVPEG-AFDSLEK 206
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 71/177 (40%), Gaps = 13/177 (7%)
Query: 481 ICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVI 540
+C+ +N S+D S L+ + N LDLQ NK S + L+++
Sbjct: 11 VCSCNNNKNSVDCSSKKLTAIP----SNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLL 66
Query: 541 DLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIR 600
L+DN LQ NLE L + DN+++ + L +L L L N+ L
Sbjct: 67 YLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSL-- 124
Query: 601 EPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELR-YMQEVIPFNEG 656
P+ KL + L N LP F K+ + ELR Y ++ EG
Sbjct: 125 PPRVFDSLTKLTYLSLGYNELQS-LPKGVFD-----KLTSLKELRLYNNQLKRVPEG 175
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 21/111 (18%)
Query: 223 RLIHLDLSFNKLSD--ELPTFIGTLGSLKELDLLQNNLS--GELPNSIGNLASLEQVDLS 278
RL L SFN L++ ELP +LK+L + N L ++P S+ DL
Sbjct: 338 RLERLIASFNHLAEVPELP------QNLKQLHVEYNPLREFPDIPESVE--------DLR 383
Query: 279 LNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLR--SLRTLDVYE 327
+N L +VP NL QLH + +F ++P S +LR S R +D YE
Sbjct: 384 MNSHLAEVPELPQNLKQLHVETNPLREF-PDIPESVEDLRMNSERVVDPYE 433
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 86/205 (41%), Gaps = 30/205 (14%)
Query: 280 NRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLS 339
N L ++P L NL L + A N+ LP +L +L D Y ++P SL+
Sbjct: 224 NNILEELPE-LQNLPFLTTI-YADNNLLKTLPDLPPSLEALNVRDNYLTDL-PELPQSLT 280
Query: 340 NLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVS 399
FLD S N FSG +L LY+L S+N + L + ++
Sbjct: 281 ------FLDVSENIFSGLSELP------PNLYYLNASSNEIRSLCDLPPS-----LEELN 323
Query: 400 LCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQ 459
+ + L E+P LE L + N + +VP+ QN L++ +N L F
Sbjct: 324 VSNNKLIELPAL---PPRLERLIASFNHL-AEVPEL-----PQNLKQLHVEYNPLREFPD 374
Query: 460 HPNTVNYLVSNNSLTGEIPSWICNL 484
P +V L N+ L E+P NL
Sbjct: 375 IPESVEDLRMNSHL-AEVPELPQNL 398
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 91/229 (39%), Gaps = 38/229 (16%)
Query: 516 LDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIF 575
L+LQ N D L+++ LS NL++ + +L L+L DN++ +
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 576 PSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNA 635
L L L L++N + P LR +DL + + + AF+
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESIPSYAFNR--VPSLRRLDLGELKRLEYISEAAFE---- 153
Query: 636 MKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVI------LSS 689
+VN LRY+ N G M + K IP+ LTA++ LS
Sbjct: 154 -GLVN---LRYL--------------------NLG-MCNLKDIPN-LTALVRLEELELSG 187
Query: 690 NRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNN 738
NR D P S L L+ L L + + +L LE L+LS+N
Sbjct: 188 NRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 135 IPSEILE-LSKLAYLDLSHNSYYDPVELRKPSLGNLA-DKLTNLKELVLGDVTISSPIPH 192
+P++ E LSKL L L +N P+E S+ + A +++ +L+ L LG++ I
Sbjct: 98 VPTQAFEYLSKLRELWLRNN----PIE----SIPSYAFNRVPSLRRLDLGELKRLEYISE 149
Query: 193 NXXXXXXXXXXXXXG-CDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKEL 251
G C+L+ IP+ L + RL L+LS N+L P L SL++L
Sbjct: 150 AAFEGLVNLRYLNLGMCNLKD-IPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKL 207
Query: 252 DLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWL 299
L+ ++ N+ +L SLE+++LS N + +P L T LH L
Sbjct: 208 WLMHAQVATIERNAFDDLKSLEELNLSHNNLMS-LPHDL--FTPLHRL 252
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 105/246 (42%), Gaps = 17/246 (6%)
Query: 212 GRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQ--NNLSGELP-NSIGN 268
+P+S+ TR +L+L N + T L+ L++LQ NL ++ +
Sbjct: 27 AEVPASIPVNTR--YLNLQENSIQ---VIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNG 81
Query: 269 LASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYEC 328
L SL ++L NR + L++L L L +N +F + SLR LD+ E
Sbjct: 82 LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGEL 141
Query: 329 KFSGQI-PSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKAT 387
K I ++ L +L +L+ + N +L + L L LS NRL L+ +
Sbjct: 142 KRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVR----LEELELSGNRLDLIRPGS 197
Query: 388 SNTTSHRFRAVSLCSCDLTEIPK-FLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGH 446
+ R + L + I + + LE L+L+ N + +P L P +
Sbjct: 198 FQGLTS-LRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS-LPHDLFTP-LHRLER 254
Query: 447 LNLSHN 452
++L+HN
Sbjct: 255 VHLNHN 260
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNI--LKVIDLS 543
+ L +L L+ N + L LG FS S+ L + + +N G++ LK ++++
Sbjct: 77 SHLSTLILTGNPIQSL---ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 133
Query: 544 DNLLQG-RIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTL 582
NL+Q ++P +N +NLE LDL N+I+ I+ + L L
Sbjct: 134 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 173
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 216 SSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNL-SGELPNSIGNLASLEQ 274
S L ++ +L+ ++ + L + P IG L +LKEL++ N + S +LP NL +LE
Sbjct: 98 SGLSSLQKLVAVETNLASL-ENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 154
Query: 275 VDLSLNRFLGKVPSSLGNLTQL 296
+DLS N+ + L L Q+
Sbjct: 155 LDLSSNKIQSIYCTDLRVLHQM 176
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 700 ISNLKGLQILSLADNSLHG-HIPSCLGNLTDLESLDLSNNRF 740
I +LK L+ L++A N + +P NLT+LE LDLS+N+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 208 CDLRGRIPSSLGNITRLIHLDLSFNKL-SDELPTFIGTLGSLKELDLLQNNLSGELPNSI 266
C+++ + +++ L L L+ N + S L F G L SL++L ++ NL+ I
Sbjct: 63 CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVETNLASLENFPI 121
Query: 267 GNLASLEQVDLSLNRFLG-KVPSSLGNLTQLHWLSLASN 304
G+L +L++++++ N K+P NLT L L L+SN
Sbjct: 122 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 160
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 483 NLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDL 542
+L + L+L++N L L +S L+ LD+ N S P+ K +LKV++L
Sbjct: 32 DLPTNITVLNLTHNQLRRLPAANFTRYSQ-LTSLDVGFNTISKLEPELCQKLPMLKVLNL 90
Query: 543 SDNLLQGRIPRSLANCSNLEFLDLGDNQIRDI 574
N L ++ A C+NL L L N I+ I
Sbjct: 91 QHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 122
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 3/132 (2%)
Query: 227 LDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELP-NSIGNLASLEQVDLSLNRFLGK 285
L+L+ NK+S LG L+ LDL N + EL L ++ ++ LS N++L
Sbjct: 396 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 455
Query: 286 VPSSLGNLTQLHWLSLASNDFSG--ELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTH 343
+S + L L L P+ F LR+L LD+ + L L
Sbjct: 456 TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 515
Query: 344 LSFLDFSLNNFS 355
L LD NN +
Sbjct: 516 LEILDLQHNNLA 527
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 483 NLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDL 542
+L + L+L++N L L +S L+ LD+ N S P+ K +LKV++L
Sbjct: 27 DLPTNITVLNLTHNQLRRLPAANFTRYSQ-LTSLDVGFNTISKLEPELCQKLPMLKVLNL 85
Query: 543 SDNLLQGRIPRSLANCSNLEFLDLGDNQIRDI 574
N L ++ A C+NL L L N I+ I
Sbjct: 86 QHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 117
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 3/132 (2%)
Query: 227 LDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELP-NSIGNLASLEQVDLSLNRFLGK 285
L+L+ NK+S LG L+ LDL N + EL L ++ ++ LS N++L
Sbjct: 391 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 450
Query: 286 VPSSLGNLTQLHWLSLASNDFSG--ELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTH 343
+S + L L L P+ F LR+L LD+ + L L
Sbjct: 451 TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 510
Query: 344 LSFLDFSLNNFS 355
L LD NN +
Sbjct: 511 LEILDLQHNNLA 522
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 483 NLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDL 542
+L + L+L++N L L +S L+ LD+ N S P+ K +LKV++L
Sbjct: 22 DLPTNITVLNLTHNQLRRLPAANFTRYSQ-LTSLDVGFNTISKLEPELCQKLPMLKVLNL 80
Query: 543 SDNLLQGRIPRSLANCSNLEFLDLGDNQIRDI 574
N L ++ A C+NL L L N I+ I
Sbjct: 81 QHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 112
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 3/132 (2%)
Query: 227 LDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELP-NSIGNLASLEQVDLSLNRFLGK 285
L+L+ NK+S LG L+ LDL N + EL L ++ ++ LS N++L
Sbjct: 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 445
Query: 286 VPSSLGNLTQLHWLSLASNDFSG--ELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTH 343
+S + L L L P+ F LR+L LD+ + L L
Sbjct: 446 TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 505
Query: 344 LSFLDFSLNNFS 355
L LD NN +
Sbjct: 506 LEILDLQHNNLA 517
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNI--LKVIDLS 543
+ L +L L+ N + L LG FS S+ L + + +N G++ LK ++++
Sbjct: 76 SHLSTLILTGNPIQSL---ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132
Query: 544 DNLLQG-RIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTL 582
NL+Q ++P +N +NLE LDL N+I+ I+ + L L
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 216 SSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNL-SGELPNSIGNLASLEQ 274
S L ++ +L+ ++ + L + P IG L +LKEL++ N + S +LP NL +LE
Sbjct: 97 SGLSSLQKLVAVETNLASL-ENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153
Query: 275 VDLSLNRFLGKVPSSLGNLTQL 296
+DLS N+ + L L Q+
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQM 175
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 700 ISNLKGLQILSLADNSLHG-HIPSCLGNLTDLESLDLSNNRF 740
I +LK L+ L++A N + +P NLT+LE LDLS+N+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 208 CDLRGRIPSSLGNITRLIHLDLSFNKL-SDELPTFIGTLGSLKELDLLQNNLSGELPNSI 266
C+++ + +++ L L L+ N + S L F G L SL++L ++ NL+ I
Sbjct: 62 CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVETNLASLENFPI 120
Query: 267 GNLASLEQVDLSLNRFLG-KVPSSLGNLTQLHWLSLASN 304
G+L +L++++++ N K+P NLT L L L+SN
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 216 SSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNL-SGELPNSIGNLASLEQ 274
S L ++ +L+ L+ + L + P IG L +LKEL++ N + S +LP NL +LE
Sbjct: 99 SGLSSLQKLVALETNLASL-ENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 155
Query: 275 VDLSLNRFLGKVPSSLGNLTQL 296
+DLS N+ + L L Q+
Sbjct: 156 LDLSSNKIQSIYCTDLRVLHQM 177
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 537 LKVIDLSDNLLQG-RIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTL 582
LK ++++ NL+Q ++P +N +NLE LDL N+I+ I+ + L L
Sbjct: 128 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 174
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 208 CDLRGRIPSSLGNITRLIHLDLSFNKL-SDELPTFIGTLGSLKELDLLQNNLSGELPNSI 266
C+++ + +++ L L L+ N + S L F G L SL++L L+ NL+ I
Sbjct: 64 CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVALETNLASLENFPI 122
Query: 267 GNLASLEQVDLSLNRFLG-KVPSSLGNLTQLHWLSLASN 304
G+L +L++++++ N K+P NLT L L L+SN
Sbjct: 123 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 161
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 700 ISNLKGLQILSLADNSLHG-HIPSCLGNLTDLESLDLSNNRF 740
I +LK L+ L++A N + +P NLT+LE LDLS+N+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 26/165 (15%)
Query: 400 LCSCD-----LTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFL 454
L +CD L E+P LK+ LD+ +N++ +P+ P++ ++N +N L
Sbjct: 105 LDACDNRLSTLPELPASLKH------LDVDNNQLT-XLPEL---PAL--LEYINADNNQL 152
Query: 455 TGFDQHPNTVNYL-VSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNF-SDW 512
T + P ++ L V NN LT ++ L LE+LD+S N L L + N S+
Sbjct: 153 TXLPELPTSLEVLSVRNNQLT-----FLPELPESLEALDVSTNLLESLPAVPVRNHHSEE 207
Query: 513 LSIL-DLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLA 556
I + N+ + IP+N+L + I L DN L RI SL+
Sbjct: 208 TEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLS 251
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 91/229 (39%), Gaps = 38/229 (16%)
Query: 516 LDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIF 575
L+LQ N D L+++ LS NL++ + +L L+L DN++ +
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 576 PSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNA 635
L L L L++N + P LR +DL + + + AF+
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESIPSYAFNR--VPSLRRLDLGELKRLEYISEAAFE---- 153
Query: 636 MKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVI------LSS 689
+VN LRY+ N G M + K IP+ LTA++ LS
Sbjct: 154 -GLVN---LRYL--------------------NLG-MCNLKDIPN-LTALVRLEELELSG 187
Query: 690 NRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNN 738
NR D P S L L+ L L + + +L LE L+LS+N
Sbjct: 188 NRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 135 IPSEILE-LSKLAYLDLSHNSYYDPVELRKPSLGNLA-DKLTNLKELVLGDVTISSPIPH 192
+P++ E LSKL L L +N P+E S+ + A +++ +L+ L LG++ I
Sbjct: 98 VPTQAFEYLSKLRELWLRNN----PIE----SIPSYAFNRVPSLRRLDLGELKRLEYISE 149
Query: 193 NXXXXXXXXXXXXXG-CDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKEL 251
G C+L+ IP+ L + RL L+LS N+L P L SL++L
Sbjct: 150 AAFEGLVNLRYLNLGMCNLKD-IPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKL 207
Query: 252 DLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWL 299
L+ ++ N+ +L SLE+++LS N + +P L T LH L
Sbjct: 208 WLMHAQVATIERNAFDDLKSLEELNLSHNNLMS-LPHDL--FTPLHRL 252
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 13/176 (7%)
Query: 212 GRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQ--NNLSGELP-NSIGN 268
+P+S+ TR +L+L N + T L+ L++LQ NL ++ +
Sbjct: 27 AEVPASIPVNTR--YLNLQENSIQ---VIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNG 81
Query: 269 LASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYEC 328
L SL ++L NR + L++L L L +N +F + SLR LD+ E
Sbjct: 82 LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGEL 141
Query: 329 KFSGQI-PSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLL 383
K I ++ L +L +L+ + N +L + L L LS NRL L+
Sbjct: 142 KRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALV----RLEELELSGNRLDLI 193
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 537 LKVIDLSDNLLQG-RIPRSLANCSNLEFLDLGDNQIRDIF 575
LK ++++ NL+Q ++P +N +NLE LDL N+I+ I+
Sbjct: 127 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 166
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 216 SSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNL-SGELPNSIGNLASLEQ 274
S L ++ +L+ ++ + L + P IG L +LKEL++ N + S +LP NL +LE
Sbjct: 98 SGLSSLQKLVAVETNLASL-ENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 154
Query: 275 VDLSLNRFLGKVPSSLGNLTQL 296
+DLS N+ + L L Q+
Sbjct: 155 LDLSSNKIQSIYCTDLRVLHQM 176
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 700 ISNLKGLQILSLADNSLHG-HIPSCLGNLTDLESLDLSNNRF 740
I +LK L+ L++A N + +P NLT+LE LDLS+N+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 208 CDLRGRIPSSLGNITRLIHLDLSFNKL-SDELPTFIGTLGSLKELDLLQNNLSGELPNSI 266
C+++ + +++ L L L+ N + S L F G L SL++L ++ NL+ I
Sbjct: 63 CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVETNLASLENFPI 121
Query: 267 GNLASLEQVDLSLNRFLG-KVPSSLGNLTQLHWLSLASN 304
G+L +L++++++ N K+P NLT L L L+SN
Sbjct: 122 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 160
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 537 LKVIDLSDNLLQG-RIPRSLANCSNLEFLDLGDNQIRDIF 575
LK ++++ NL+Q ++P +N +NLE LDL N+I+ I+
Sbjct: 128 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 167
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 216 SSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNL-SGELPNSIGNLASLEQ 274
S L ++ +L+ ++ + L + P IG L +LKEL++ N + S +LP NL +LE
Sbjct: 99 SGLSSLQKLVAVETNLASL-ENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 155
Query: 275 VDLSLNRFLGKVPSSLGNLTQL 296
+DLS N+ + L L Q+
Sbjct: 156 LDLSSNKIQSIYCTDLRVLHQM 177
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 700 ISNLKGLQILSLADNSLHG-HIPSCLGNLTDLESLDLSNNRF 740
I +LK L+ L++A N + +P NLT+LE LDLS+N+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 208 CDLRGRIPSSLGNITRLIHLDLSFNKL-SDELPTFIGTLGSLKELDLLQNNLSGELPNSI 266
C+++ + +++ L L L+ N + S L F G L SL++L ++ NL+ I
Sbjct: 64 CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVETNLASLENFPI 122
Query: 267 GNLASLEQVDLSLNRFLG-KVPSSLGNLTQLHWLSLASN 304
G+L +L++++++ N K+P NLT L L L+SN
Sbjct: 123 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 161
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 223 RLIHLDLSFNKLSD-ELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNR 281
+L ++ S NK++D E F G G + E+ L N L L SL+ + L NR
Sbjct: 58 QLRKINFSNNKITDIEEGAFEGASG-VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR 116
Query: 282 FLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDV 325
S L+ + LSL N + P +F L SL TL++
Sbjct: 117 ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 4/131 (3%)
Query: 614 IDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQ-EVIPFNEGNGIYDYSLTMSNKGQM 672
+ L+ N FT + F+ ++ +N S + E F +G+ + LT SN+ +
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT-SNRLEN 95
Query: 673 MSYKKIPDI--LTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDL 730
+ +K + L ++L SNR S L +++LSL DN + P L L
Sbjct: 96 VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL 155
Query: 731 ESLDLSNNRFS 741
+L+L N F+
Sbjct: 156 STLNLLANPFN 166
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 694 GEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTF 753
+PT I Q+L L DN + P LT L LDL NN+ + +LT
Sbjct: 22 ASVPTGIPTTT--QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 754 LEFFNVSDNHFTGPIPQG 771
L +++DN IP+G
Sbjct: 80 LTQLSLNDNQLKS-IPRG 96
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 237 ELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQL 296
+PT I T + + L L N ++ P L L ++DL N+ LTQL
Sbjct: 23 SVPTGIPT--TTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL 80
Query: 297 HWLSLASNDFSGELPASFGNLRSL 320
LSL N +F NLRSL
Sbjct: 81 TQLSLNDNQLKSIPRGAFDNLRSL 104
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 694 GEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTF 753
+PT I Q+L L DN + P LT L LDL NN+ + +LT
Sbjct: 30 ASVPTGIPTTT--QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 87
Query: 754 LEFFNVSDNHFTGPIPQG 771
L +++DN IP+G
Sbjct: 88 LTQLSLNDNQLKS-IPRG 104
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 694 GEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTF 753
+PT I Q+L L DN + P LT L LDL NN+ + +LT
Sbjct: 22 ASVPTGIPTTT--QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 754 LEFFNVSDNHFTGPIPQG 771
L +++DN IP+G
Sbjct: 80 LTQLSLNDNQLKS-IPRG 96
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 560 NLEFLDLGDNQIRDIF---PSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDL 616
+LE+LDL +N + + + + P L LIL+ N L + +T L ID+
Sbjct: 335 SLEYLDLSENLMVEEYLKNSACEDAWPSLQTLILRQNHLASLEKTGETLLTLKNLTNIDI 394
Query: 617 SKNRFTGKLPSMAFQC-W-NAMKVVNASELR 645
SKN F SM C W MK +N S R
Sbjct: 395 SKNSF----HSMPETCQWPEKMKYLNLSSTR 421
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 238 LPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLH 297
LP I L +LK L + + LS P +I +L LE++DL L P G L
Sbjct: 198 LPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256
Query: 298 WLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNL 341
L L LP L L LD+ C ++PS ++ L
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 9/144 (6%)
Query: 214 IPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLS--------GELPNS 265
+P+S+ ++ RL L + ELP + + + E L N S LP S
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS 201
Query: 266 IGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDV 325
I NL +L+ + + N L + ++ +L +L L L P FG L+ L +
Sbjct: 202 IANLQNLKSLKIR-NSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260
Query: 326 YECKFSGQIPSSLSNLTHLSFLDF 349
+C +P + LT L LD
Sbjct: 261 KDCSNLLTLPLDIHRLTQLEKLDL 284
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 283 LGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSN 340
L ++P + L L+LA N LPAS +L LR L + C ++P L++
Sbjct: 116 LXELPDTXQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLAS 172
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 28/61 (45%)
Query: 678 IPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSN 737
IP + L NR S + + L IL L N+L G + LT LE LDLS+
Sbjct: 29 IPASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSD 88
Query: 738 N 738
N
Sbjct: 89 N 89
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 56/143 (39%)
Query: 210 LRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNL 269
LR P++ + L L L L + P L +L+ L L NNL N+ +L
Sbjct: 92 LRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDL 151
Query: 270 ASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECK 329
+L + L NR + L L L L N + P +F +L L TL ++
Sbjct: 152 GNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANN 211
Query: 330 FSGQIPSSLSNLTHLSFLDFSLN 352
S L L L +L + N
Sbjct: 212 LSMLPAEVLVPLRSLQYLRLNDN 234
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%)
Query: 516 LDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIF 575
LDL NK + +L L+V+ L + + + + +LE LDL DN + +
Sbjct: 57 LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS 116
Query: 576 PSWLGTLPDLNVLILKSNKFHGL 598
SW G L L L L N + L
Sbjct: 117 SSWFGPLSSLKYLNLMGNPYQTL 139
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 7/119 (5%)
Query: 142 LSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPH-NXXXXXXX 200
LS L YL+L N Y + + +L LTNL+ L +G+V S I +
Sbjct: 123 LSSLKYLNLMGNPY------QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL 176
Query: 201 XXXXXXGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLS 259
LR SL +I + HL L ++ + L F L S++ L+L NL+
Sbjct: 177 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA 235
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 560 NLEFLDLGDNQIRDIF---PSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDL 616
+LEFLDL +N + + + + G P L L+L N + + + L +D+
Sbjct: 361 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI 420
Query: 617 SKNRFTGKLPSMAFQCWNAMKVVNASE--LRYMQEVIP 652
S+N F +P + Q M+ +N S +R ++ IP
Sbjct: 421 SRNTF-HPMPD-SCQWPEKMRFLNLSSTGIRVVKTCIP 456
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 12/145 (8%)
Query: 217 SLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQN-----NLSGELPNSIGNLAS 271
SLG++ HLDLS N LS ++ G L SLK L+L+ N ++ PN + NL +
Sbjct: 98 SLGSLE---HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN-LTNLQT 153
Query: 272 LEQVDLSLNRFLGKVP-SSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKF 330
L ++ + ++ + L +L +L +L+ ++ + S ++ L TL + E F
Sbjct: 154 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL-TLHLSESAF 212
Query: 331 SGQIPSS-LSNLTHLSFLDFSLNNF 354
+I + LS++ +L D +L F
Sbjct: 213 LLEIFADILSSVRYLELRDTNLARF 237
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%)
Query: 516 LDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIF 575
LDL NK + +L L+V+ L + + + + +LE LDL DN + +
Sbjct: 31 LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS 90
Query: 576 PSWLGTLPDLNVLILKSNKFHGL 598
SW G L L L L N + L
Sbjct: 91 SSWFGPLSSLKYLNLMGNPYQTL 113
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 7/119 (5%)
Query: 142 LSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPH-NXXXXXXX 200
LS L YL+L N Y + + +L LTNL+ L +G+V S I +
Sbjct: 97 LSSLKYLNLMGNPY------QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL 150
Query: 201 XXXXXXGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLS 259
LR SL +I + HL L ++ + L F L S++ L+L NL+
Sbjct: 151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA 209
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 560 NLEFLDLGDNQIRDIF---PSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDL 616
+LEFLDL +N + + + + G P L L+L N + + + L +D+
Sbjct: 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI 394
Query: 617 SKNRFTGKLPSMAFQCWNAMKVVNASE--LRYMQEVIP 652
S+N F +P + Q M+ +N S +R ++ IP
Sbjct: 395 SRNTF-HPMPD-SCQWPEKMRFLNLSSTGIRVVKTCIP 430
>pdb|1TJ7|A Chain A, Structure Determination And Refinement At 2.44 A
Resolution Of Argininosuccinate Lyase From E. Coli
pdb|1TJ7|B Chain B, Structure Determination And Refinement At 2.44 A
Resolution Of Argininosuccinate Lyase From E. Coli
Length = 457
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 645 RYMQEVIPFNEGN-GIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNL 703
R+ +++I FN G G + S +++ +M KK PD L + R G + + L
Sbjct: 251 RFAEDLIFFNTGEAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMMMTL 310
Query: 704 KGL 706
KGL
Sbjct: 311 KGL 313
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 251 LDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSL-GNLTQLHWLSLASNDFSGE 309
L L N ++ P +L +L+++ L N+ LG +P + +LTQL L L +N +
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 310 LPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNF 354
A F L L+ L + C ++P + LTHL+ L N
Sbjct: 104 PSAVFDRLVHLKELFMC-CNKLTELPRGIERLTHLTHLALDQNQL 147
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 559 SNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSK 618
+N + L L DNQI + P +L +L L L SN+ G + D +L ++DL
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFD-SLTQLTVLDLGT 97
Query: 619 NRFTGKLPSMAF 630
N+ T LPS F
Sbjct: 98 NQLT-VLPSAVF 108
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 13/111 (11%)
Query: 559 SNLEFLDLGDNQIRDI-FPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLS 617
S +++LDL N+I + F + L L L+ N I + K F KL+ +DLS
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN----FIYDVKGQVVFAKLKTLDLS 199
Query: 618 KNR--FTG-KLPSMAFQCWNAMK----VVNASELRYMQEVIPFN-EGNGIY 660
N+ F G + S A W +++ V+ LR+ Q + F+ GNG +
Sbjct: 200 SNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 49/116 (42%)
Query: 208 CDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIG 267
C L+ P + L +L L N L LG+L L L N +S +
Sbjct: 115 CGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 174
Query: 268 NLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTL 323
L SL+++ L NR P + +L +L L L +N+ S + LR+L+ L
Sbjct: 175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 49/116 (42%)
Query: 208 CDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIG 267
C L+ P + L +L L N L LG+L L L N +S +
Sbjct: 114 CGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 173
Query: 268 NLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTL 323
L SL+++ L NR P + +L +L L L +N+ S + LR+L+ L
Sbjct: 174 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 229
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 13/111 (11%)
Query: 559 SNLEFLDLGDNQIRDI-FPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLS 617
S +++LDL N+I + F + L L L+ N I + K F KL+ +DLS
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN----FIYDVKGQVVFAKLKTLDLS 199
Query: 618 KNR--FTG-KLPSMAFQCWNAMK----VVNASELRYMQEVIPFN-EGNGIY 660
N+ F G + S A W +++ V+ LR+ Q + F+ GNG +
Sbjct: 200 SNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250
>pdb|1SPX|A Chain A, Crystal Structure Of Glucose Dehydrogenase Of
Caenorhabditis Elegans In The Apo-Form
Length = 278
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 244 TLGSLKELDLLQNNLSGELPNS---IGNLASLEQVDLSLN 280
TLG +LD+L NN +P+S G S+E D +LN
Sbjct: 80 TLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLN 119
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 76/178 (42%), Gaps = 31/178 (17%)
Query: 454 LTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYN-NLSGLLPQCLGNFSDW 512
LT D H +++ + LTG + IC SN + +LDLS N NL+ L C N
Sbjct: 44 LTSLDCHNSSITDMTGIEKLTG-LTKLICT-SNNITTLDLSQNTNLTYL--ACDSNKLTN 99
Query: 513 LSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIR 572
L + L + + L K +D+S N L L +L+ N +
Sbjct: 100 LDVTPLTKLTYLNCDTNKLTK------LDVSQNPL-------------LTYLNCARNTLT 140
Query: 573 DIFPSWLGTLPDLNVLILKSNKFHGLIREPKT-----DCGFPKLRIIDLSKNRFTGKL 625
+I S L +L+ + K K L P+T DC F K+ +D+S+N+ +L
Sbjct: 141 EIDVSHNTQLTELDCHLNK--KITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRL 196
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 704 KGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNH 763
K L L+++ N L I CL ++ LDL +N+ IP+Q+V+L L+ NV+ N
Sbjct: 399 KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQ 455
Query: 764 FTGPIPQG--KQFATFDKTSFDGNSGLCGRP 792
+P G + + K N C P
Sbjct: 456 LKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 485
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 97/417 (23%), Positives = 175/417 (41%), Gaps = 50/417 (11%)
Query: 224 LIHLDLSFNKLSDELPTF--IGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNR 281
L HLDLSFN D LP G + LK L L +L I +L ++ +V L L
Sbjct: 92 LKHLDLSFNAF-DALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL-NISKVLLVLGE 149
Query: 282 FLGKVPSSLG----NLTQLHWLSLASNDFSGELPASFGNLRSLR------TLDVYECKFS 331
G+ G N LH + + +F L S + +L L+ +C +
Sbjct: 150 TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYF 209
Query: 332 GQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIF---LVNHKLLYHLFLSTNRLSLLTKATS 388
I + L LS + +LNN + I LV H +++ +S +L +
Sbjct: 210 LSILAKLQTNPKLS--NLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL----QGQL 263
Query: 389 NTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASN------KINGKVPKWLLDPS-M 441
+ + SL + + ++ + + ++ SN ++G +L PS +
Sbjct: 264 DFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKI 323
Query: 442 QNFGHLNLSHNFLTG--FDQ--HPNTVNYLVSNNSLTGEIPSWICNLSNRLESL---DLS 494
F HL+ S+N LT F+ H + L+ + E+ S I ++ +++SL D+S
Sbjct: 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL-SKIAEMTTQMKSLQQLDIS 382
Query: 495 YNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRS 554
N++S + +++ L L++ N + TI L +KV+DL N ++ IP+
Sbjct: 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR--IKVLDLHSNKIKS-IPKQ 439
Query: 555 LANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKL 611
+ L+ L++ NQ++ + L L + L +N + DC P++
Sbjct: 440 VVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW---------DCSCPRI 487
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 219 GNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLS--GELPNSIGNLASLEQVD 276
I+ +HLD S N L+D + G L L+ L L N L ++ + SL+Q+D
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380
Query: 277 LSLN 280
+S N
Sbjct: 381 ISQN 384
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 7/138 (5%)
Query: 216 SSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSI-GNLASLEQ 274
S+L +T L +L L+ N+L L +LKEL L++N L LP+ + L +L
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTY 137
Query: 275 VDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQI 334
+ L N+ LT L L L +N F L L+ L + + + +
Sbjct: 138 LYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS-V 196
Query: 335 PSS----LSNLTHLSFLD 348
P L++LTH+ L+
Sbjct: 197 PDGVFDRLTSLTHIWLLN 214
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 56/141 (39%), Gaps = 11/141 (7%)
Query: 137 SEILELSKLAYLDLSHNSYYDPVELRKPSLGN-LADKLTNLKELVLGDVTISSPIPHNXX 195
S + EL+ L YL L+ N SL N + DKLTNLKELVL + + S +P
Sbjct: 79 SALKELTNLTYLILTGNQLQ--------SLPNGVFDKLTNLKELVLVENQLQS-LPDGVF 129
Query: 196 XXXXXXXXXXXGCDLRGRIPSSL-GNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLL 254
+ +P + +T L LDL N+L L LK+L L
Sbjct: 130 DKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLN 189
Query: 255 QNNLSGELPNSIGNLASLEQV 275
N L L SL +
Sbjct: 190 DNQLKSVPDGVFDRLTSLTHI 210
>pdb|2EI9|A Chain A, Crystal Structure Of R1bm Endonuclease Domain
Length = 240
Score = 30.4 bits (67), Expect = 4.8, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 147 YLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHN 193
Y+ ++ Y DP++ LGN+ D+L + ++ D SP+ H+
Sbjct: 91 YMVSAYFQYSDPIDPYLHRLGNILDRLRGARVVICADTNAHSPLWHS 137
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 556 ANCSNLEFLDLGDNQIRDIFPSWLGTLPD-------LNVLILKSNKFHGLIREPKTDCGF 608
A C NL+ LDL ++ + D+ WL PD LN+ L S + T C
Sbjct: 153 ATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC-- 210
Query: 609 PKLRIIDLSKNRFTGKLPSM 628
P L+ + L++ KL ++
Sbjct: 211 PNLKSLKLNRAVPLEKLATL 230
>pdb|2V6E|A Chain A, Protelomerase Telk Complexed With Substrate Dna
pdb|2V6E|B Chain B, Protelomerase Telk Complexed With Substrate Dna
Length = 558
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 359 DLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLK 413
DL+ VNH++LYHL LS+ + + + +N S + R V + + P++++
Sbjct: 211 DLNNLKVNHEVLYHLQLSSAERTSIQQRWANVLSEKKRNVVVI-----DYPRYMQ 260
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 555 LANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGL 598
LA +NL++L +G+NQ+ D+ P L L L L NK +
Sbjct: 153 LAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKISDI 194
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 4/100 (4%)
Query: 669 KGQMMSYKKIPDILTAVI----LSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCL 724
KG S IP LT + LS+NR + + LQ L L N ++
Sbjct: 37 KGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF 96
Query: 725 GNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHF 764
+L LE LDLS N S L+ L F N+ N +
Sbjct: 97 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 136
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 103/257 (40%), Gaps = 36/257 (14%)
Query: 214 IPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLE 273
IPS L + LDLS N+++ + + +L+ L L N ++ +S +L SLE
Sbjct: 46 IPSGLTEAVK--SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103
Query: 274 QVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFS--GELPASFGNLRSLRTLDVYEC-KF 330
+DLS N S L+ L +L+L N + GE + F +L L+ L V F
Sbjct: 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE-TSLFSHLTKLQILRVGNMDTF 162
Query: 331 SGQIPSSLSNLTHLSFLDF-----------SLNNFSGKMDLDIFLVNHKLLYHLF----- 374
+ + LT L L+ SL + L + + H LL +F
Sbjct: 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS 222
Query: 375 -----------LSTNRLSLLTKATSNTTSHR--FRAVSLCSCDLTEIPKFLKNQHHLELL 421
L T S L+ +N+ + FR V + L ++ K L L L
Sbjct: 223 SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLEL 282
Query: 422 DLASNKINGKVPKWLLD 438
+ + N++ VP + D
Sbjct: 283 EFSRNQLKS-VPDGIFD 298
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 3/142 (2%)
Query: 214 IPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLE 273
+P + TRL L+L N++ L L+ L L +N++ + LA+L
Sbjct: 58 VPDGISTNTRL--LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLN 115
Query: 274 QVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQ 333
++L NR + L++L L L +N +F + SLR LD+ E K
Sbjct: 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY 175
Query: 334 IPS-SLSNLTHLSFLDFSLNNF 354
I + L++L +L+ ++ N
Sbjct: 176 ISEGAFEGLSNLRYLNLAMCNL 197
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 237 ELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQL 296
E+PT + ++ E+ L QN + P + L ++DLS N+ P + L L
Sbjct: 25 EIPTNLPE--TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
Query: 297 HWLSLASNDFSGELPASF 314
+ L L N + ELP S
Sbjct: 83 NSLVLYGNKIT-ELPKSL 99
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 237 ELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQL 296
E+PT + ++ E+ L QN + P + L ++DLS N+ P + L L
Sbjct: 25 EIPTNLPE--TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
Query: 297 HWLSLASNDFSGELPASF 314
+ L L N + ELP S
Sbjct: 83 NSLVLYGNKIT-ELPKSL 99
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 698 TSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSG-QIPQQLVELTFLEF 756
T +S L L LSL DN + +P L LT L++L LS N S + + L L LE
Sbjct: 148 TVLSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSKNHISDLRALRGLKNLDVLEL 205
Query: 757 F 757
F
Sbjct: 206 F 206
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 555 LANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKF 595
LAN S L L DN+I DI P L +LP+L + LK+N+
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQI 207
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 65/187 (34%), Gaps = 25/187 (13%)
Query: 559 SNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSK 618
S+ FL+ N D TL L LIL+ N + L +D+S
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412
Query: 619 NRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKI 678
N ++ V+N S SN ++ +
Sbjct: 413 NSLNSHAYDRTCAWAESILVLNLS------------------------SNMLTGSVFRCL 448
Query: 679 PDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNN 738
P + + L +NR IP +++L+ LQ L++A N L LT L+ + L +N
Sbjct: 449 PPKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Query: 739 RFSGQIP 745
+ P
Sbjct: 508 PWDCTCP 514
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,506,359
Number of Sequences: 62578
Number of extensions: 1145611
Number of successful extensions: 3417
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 2219
Number of HSP's gapped (non-prelim): 556
length of query: 930
length of database: 14,973,337
effective HSP length: 108
effective length of query: 822
effective length of database: 8,214,913
effective search space: 6752658486
effective search space used: 6752658486
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)