Query 047985
Match_columns 930
No_of_seqs 925 out of 5636
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 05:08:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047985.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047985hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.5E-73 3.3E-78 721.2 47.2 584 7-792 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 7.8E-58 1.7E-62 578.1 40.6 515 94-789 69-585 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 9.2E-39 2E-43 327.6 -15.4 493 70-628 47-545 (565)
4 KOG0472 Leucine-rich repeat pr 100.0 1E-38 2.3E-43 327.2 -17.0 246 92-356 43-289 (565)
5 KOG0618 Serine/threonine phosp 100.0 3.4E-36 7.3E-41 338.7 -2.5 484 123-763 2-487 (1081)
6 KOG4194 Membrane glycoprotein 100.0 1.3E-34 2.8E-39 309.6 8.1 365 97-592 81-448 (873)
7 KOG4194 Membrane glycoprotein 100.0 1.1E-34 2.5E-39 310.0 7.6 377 177-630 81-460 (873)
8 KOG0618 Serine/threonine phosp 100.0 3.8E-35 8.2E-40 330.3 -2.5 513 98-773 2-517 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 3.8E-33 8.2E-38 299.4 -3.1 374 91-602 4-381 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 6.9E-33 1.5E-37 297.5 -1.3 251 68-355 7-258 (1255)
11 KOG4237 Extracellular matrix p 99.9 3.1E-25 6.8E-30 228.5 -1.4 412 223-738 68-498 (498)
12 PLN03210 Resistant to P. syrin 99.9 1.7E-21 3.6E-26 247.1 27.8 359 68-452 532-903 (1153)
13 PLN03210 Resistant to P. syrin 99.9 1.4E-21 3E-26 247.8 26.7 345 217-620 553-904 (1153)
14 KOG4237 Extracellular matrix p 99.9 2E-24 4.3E-29 222.6 -3.7 416 247-762 68-498 (498)
15 PRK15387 E3 ubiquitin-protein 99.9 1.4E-21 3.1E-26 229.5 17.4 202 486-770 262-463 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 7E-21 1.5E-25 223.7 15.5 227 442-752 242-469 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 2.5E-19 5.4E-24 212.3 12.1 244 396-741 181-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 8.1E-18 1.8E-22 199.5 20.3 293 8-355 62-401 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 7.2E-19 1.6E-23 194.1 4.1 279 99-378 3-317 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.6E-18 3.6E-23 191.2 2.1 256 123-381 2-291 (319)
21 PLN03150 hypothetical protein; 99.6 1.8E-15 3.9E-20 179.4 9.4 117 682-798 420-538 (623)
22 KOG0617 Ras suppressor protein 99.6 5E-17 1.1E-21 149.4 -3.2 161 536-751 34-195 (264)
23 KOG0617 Ras suppressor protein 99.6 7E-17 1.5E-21 148.5 -5.7 158 89-283 28-186 (264)
24 PLN03150 hypothetical protein; 99.5 9.7E-14 2.1E-18 164.7 14.8 125 5-153 368-500 (623)
25 KOG1909 Ran GTPase-activating 99.2 6E-12 1.3E-16 129.7 0.4 250 91-354 27-310 (382)
26 KOG0532 Leucine-rich repeat (L 99.1 3.4E-12 7.3E-17 138.7 -2.4 128 464-599 78-205 (722)
27 KOG0532 Leucine-rich repeat (L 99.1 3.7E-12 7.9E-17 138.5 -3.4 171 395-596 77-247 (722)
28 COG4886 Leucine-rich repeat (L 99.0 3.2E-10 6.9E-15 128.9 7.9 200 98-314 97-297 (394)
29 KOG1909 Ran GTPase-activating 99.0 5.9E-11 1.3E-15 122.5 1.4 254 113-381 24-311 (382)
30 KOG3207 Beta-tubulin folding c 99.0 8.2E-11 1.8E-15 124.5 2.0 116 338-455 142-259 (505)
31 COG4886 Leucine-rich repeat (L 99.0 8.5E-10 1.8E-14 125.5 8.9 201 122-338 96-297 (394)
32 KOG3207 Beta-tubulin folding c 99.0 1.4E-10 3E-15 122.8 1.1 211 116-356 118-340 (505)
33 KOG1259 Nischarin, modulator o 98.8 9.6E-10 2.1E-14 110.6 0.4 134 269-410 283-416 (490)
34 PF08263 LRRNT_2: Leucine rich 98.8 6.3E-09 1.4E-13 76.1 4.4 43 7-64 1-43 (43)
35 KOG1259 Nischarin, modulator o 98.8 1.2E-09 2.6E-14 110.0 0.7 133 221-359 283-416 (490)
36 PF14580 LRR_9: Leucine-rich r 98.8 4.1E-09 9E-14 102.7 4.0 104 198-306 19-125 (175)
37 PF14580 LRR_9: Leucine-rich r 98.8 6.9E-09 1.5E-13 101.1 4.9 103 269-374 41-146 (175)
38 KOG4658 Apoptotic ATPase [Sign 98.7 1.2E-08 2.6E-13 123.9 7.2 248 95-355 546-807 (889)
39 PF13855 LRR_8: Leucine rich r 98.7 7.9E-09 1.7E-13 82.7 3.3 60 705-764 2-61 (61)
40 PF13855 LRR_8: Leucine rich r 98.6 2E-08 4.3E-13 80.4 3.5 60 681-740 2-61 (61)
41 KOG0531 Protein phosphatase 1, 98.6 9.5E-09 2.1E-13 117.0 0.4 221 486-769 95-322 (414)
42 KOG4658 Apoptotic ATPase [Sign 98.6 6.2E-08 1.3E-12 117.8 7.0 104 223-327 546-651 (889)
43 KOG0531 Protein phosphatase 1, 98.6 6E-09 1.3E-13 118.7 -1.7 61 92-155 70-130 (414)
44 KOG2120 SCF ubiquitin ligase, 98.4 8.2E-09 1.8E-13 104.1 -4.6 182 95-304 186-373 (419)
45 KOG1859 Leucine-rich repeat pr 98.3 1.3E-08 2.8E-13 114.0 -7.8 127 247-380 165-291 (1096)
46 COG5238 RNA1 Ran GTPase-activa 98.2 4.8E-07 1E-11 90.5 1.7 38 318-355 272-316 (388)
47 KOG2982 Uncharacterized conser 98.2 1E-06 2.2E-11 89.3 4.0 191 221-432 70-265 (418)
48 KOG1859 Leucine-rich repeat pr 98.2 9.2E-08 2E-12 107.4 -4.4 126 462-595 165-291 (1096)
49 COG5238 RNA1 Ran GTPase-activa 98.2 6.6E-07 1.4E-11 89.5 2.0 189 69-260 31-256 (388)
50 KOG2120 SCF ubiquitin ligase, 98.2 5.8E-08 1.3E-12 98.1 -5.5 69 167-235 203-273 (419)
51 KOG4579 Leucine-rich repeat (L 98.2 1.5E-07 3.2E-12 84.6 -2.6 86 682-771 55-141 (177)
52 KOG4341 F-box protein containi 97.9 6.7E-07 1.4E-11 95.0 -3.5 297 68-371 138-455 (483)
53 PRK15386 type III secretion pr 97.9 2.6E-05 5.6E-10 85.5 8.0 161 533-765 50-219 (426)
54 KOG4579 Leucine-rich repeat (L 97.8 1.9E-06 4.1E-11 77.6 -1.7 88 679-769 76-163 (177)
55 PF12799 LRR_4: Leucine Rich r 97.7 2.5E-05 5.3E-10 57.2 2.5 36 705-741 2-37 (44)
56 PF12799 LRR_4: Leucine Rich r 97.6 3.6E-05 7.8E-10 56.4 2.6 37 728-765 1-37 (44)
57 KOG2982 Uncharacterized conser 97.6 2E-05 4.3E-10 80.2 1.1 108 247-354 46-158 (418)
58 PRK15386 type III secretion pr 97.6 0.00023 4.9E-09 78.2 8.8 9 901-909 416-424 (426)
59 KOG3665 ZYG-1-like serine/thre 97.5 6.5E-05 1.4E-09 89.5 3.5 153 69-232 61-230 (699)
60 KOG3665 ZYG-1-like serine/thre 97.4 8.5E-05 1.8E-09 88.5 2.9 134 94-236 122-264 (699)
61 KOG4341 F-box protein containi 97.3 1.2E-05 2.5E-10 85.7 -4.6 13 608-620 425-437 (483)
62 KOG1644 U2-associated snRNP A' 97.2 0.0005 1.1E-08 66.7 5.8 107 512-620 43-151 (233)
63 KOG1644 U2-associated snRNP A' 97.2 0.00057 1.2E-08 66.3 5.7 105 247-353 43-151 (233)
64 PF13306 LRR_5: Leucine rich r 96.7 0.0043 9.3E-08 57.9 7.1 35 218-253 31-65 (129)
65 PF13306 LRR_5: Leucine rich r 96.7 0.0044 9.6E-08 57.8 7.1 106 217-327 7-112 (129)
66 KOG2739 Leucine-rich acidic nu 96.5 0.0021 4.5E-08 65.3 3.3 67 340-406 63-129 (260)
67 KOG2739 Leucine-rich acidic nu 96.3 0.0013 2.8E-08 66.7 0.9 13 294-306 91-103 (260)
68 KOG1947 Leucine rich repeat pr 95.8 0.0019 4.2E-08 75.5 -0.7 131 142-277 187-328 (482)
69 KOG1947 Leucine rich repeat pr 95.7 0.0023 5E-08 74.9 -0.6 174 170-353 184-373 (482)
70 PF00560 LRR_1: Leucine Rich R 95.6 0.0042 9.1E-08 37.8 0.5 18 706-724 2-19 (22)
71 PF00560 LRR_1: Leucine Rich R 95.3 0.0072 1.6E-07 36.8 0.9 21 729-750 1-21 (22)
72 KOG2123 Uncharacterized conser 95.3 0.00088 1.9E-08 67.9 -5.0 98 247-348 20-123 (388)
73 KOG2123 Uncharacterized conser 94.8 0.0026 5.7E-08 64.6 -3.5 57 69-132 20-76 (388)
74 KOG4308 LRR-containing protein 93.5 0.00097 2.1E-08 76.2 -10.8 39 318-356 262-304 (478)
75 KOG4308 LRR-containing protein 92.8 0.0017 3.7E-08 74.3 -10.1 61 272-332 235-304 (478)
76 KOG0473 Leucine-rich repeat pr 91.4 0.015 3.2E-07 57.8 -4.0 82 681-765 43-124 (326)
77 PF13504 LRR_7: Leucine rich r 87.7 0.29 6.3E-06 27.6 1.0 11 706-716 3-13 (17)
78 KOG0473 Leucine-rich repeat pr 87.2 0.024 5.3E-07 56.3 -5.9 82 67-154 41-122 (326)
79 smart00370 LRR Leucine-rich re 82.9 0.83 1.8E-05 28.9 1.6 14 728-741 2-15 (26)
80 smart00369 LRR_TYP Leucine-ric 82.9 0.83 1.8E-05 28.9 1.6 14 728-741 2-15 (26)
81 PF13516 LRR_6: Leucine Rich r 82.5 0.23 4.9E-06 30.9 -1.2 16 728-743 2-17 (24)
82 PF08263 LRRNT_2: Leucine rich 79.1 0.45 9.8E-06 34.5 -0.7 39 878-928 3-41 (43)
83 smart00369 LRR_TYP Leucine-ric 78.7 1.4 2.9E-05 27.9 1.5 16 559-574 2-17 (26)
84 smart00370 LRR Leucine-rich re 78.7 1.4 2.9E-05 27.9 1.5 16 559-574 2-17 (26)
85 KOG3864 Uncharacterized conser 69.8 0.8 1.7E-05 45.1 -1.8 34 121-154 103-136 (221)
86 smart00365 LRR_SD22 Leucine-ri 69.3 3.4 7.3E-05 26.3 1.5 15 727-741 1-15 (26)
87 KOG4242 Predicted myosin-I-bin 65.7 39 0.00084 38.1 9.6 190 414-626 163-371 (553)
88 KOG3864 Uncharacterized conser 64.4 1.9 4.1E-05 42.6 -0.4 39 608-646 150-188 (221)
89 KOG4242 Predicted myosin-I-bin 57.5 39 0.00084 38.0 7.9 60 223-282 215-280 (553)
90 smart00368 LRR_RI Leucine rich 55.0 8.3 0.00018 24.9 1.5 14 728-741 2-15 (28)
91 smart00364 LRR_BAC Leucine-ric 53.9 8.1 0.00018 24.6 1.2 12 706-717 4-15 (26)
92 KOG3763 mRNA export factor TAP 45.6 10 0.00022 43.4 1.2 14 175-188 271-284 (585)
93 KOG3763 mRNA export factor TAP 24.6 59 0.0013 37.5 2.9 15 317-331 217-231 (585)
94 TIGR00864 PCC polycystin catio 21.0 50 0.0011 45.6 1.7 32 686-717 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.5e-73 Score=721.20 Aligned_cols=584 Identities=38% Similarity=0.620 Sum_probs=438.0
Q ss_pred cHHHHHHHHHHHhhcCCCCCccccccCCCccCCCCCCCCCCCCCCCCCCCcccceEecCCCCcEEEEEcCCCCCcccccC
Q 047985 7 HGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCSWDGVQCNENTGHVIKLDLSSSCLQGSINS 86 (930)
Q Consensus 7 ~~~~~~aLl~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~~C~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~ 86 (930)
+++|++||++||+++.++.. .+.+|.. ..+||.|.||+|+. .++|+.|||+++.+.|.+++
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~--------------~~~~w~~----~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~ 87 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLK--------------YLSNWNS----SADVCLWQGITCNN-SSRVVSIDLSGKNISGKISS 87 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcc--------------cCCCCCC----CCCCCcCcceecCC-CCcEEEEEecCCCccccCCh
Confidence 57899999999999975533 5789976 57999999999986 47999999999999998866
Q ss_pred cccccCCCCCCEEECCCCCCCCCCCchhcc-CCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCc
Q 047985 87 SSSLFKLVHLEWLDLAFNDFDGSEIPPEII-NLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPS 165 (930)
Q Consensus 87 ~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~ 165 (930)
.+..+++|++|+|++|.+.+. +|..+. .+++|++|+|++|.++|.+|. +.+++|++|+|++|.
T Consensus 88 --~~~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~----------- 151 (968)
T PLN00113 88 --AIFRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNM----------- 151 (968)
T ss_pred --HHhCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCc-----------
Confidence 888999999999999999875 777655 899999999999999888775 456777777777763
Q ss_pred hhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCC
Q 047985 166 LGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTL 245 (930)
Q Consensus 166 l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 245 (930)
+++.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++
T Consensus 152 --------------------~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 211 (968)
T PLN00113 152 --------------------LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM 211 (968)
T ss_pred --------------------ccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCc
Confidence 344445555555555555555555555555556666666666666666665566666666
Q ss_pred CCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeec
Q 047985 246 GSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDV 325 (930)
Q Consensus 246 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 325 (930)
++|++|++++|.+++.+|..++++++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|..+.++++|++|++
T Consensus 212 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 291 (968)
T PLN00113 212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDL 291 (968)
T ss_pred CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEEC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred ccccccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCC
Q 047985 326 YECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDL 405 (930)
Q Consensus 326 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l 405 (930)
++|.+.+.+|..+.++++|+.|++++|.+.+.+|
T Consensus 292 s~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~---------------------------------------------- 325 (968)
T PLN00113 292 SDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP---------------------------------------------- 325 (968)
T ss_pred cCCeeccCCChhHcCCCCCcEEECCCCccCCcCC----------------------------------------------
Confidence 6666666666666666667777666666654433
Q ss_pred CCcchhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcc
Q 047985 406 TEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLS 485 (930)
Q Consensus 406 ~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~ 485 (930)
..+..+++|+.|++++|.+.+.+|.. +..+
T Consensus 326 ----~~~~~l~~L~~L~L~~n~l~~~~p~~---------------------------------------------l~~~- 355 (968)
T PLN00113 326 ----VALTSLPRLQVLQLWSNKFSGEIPKN---------------------------------------------LGKH- 355 (968)
T ss_pred ----hhHhcCCCCCEEECcCCCCcCcCChH---------------------------------------------HhCC-
Confidence 22334455555555555554444333 2233
Q ss_pred cccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEec
Q 047985 486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLD 565 (930)
Q Consensus 486 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 565 (930)
++|+.|++++|++++.+|..+..+.. |+.|++++|++.+.+|..+..+++|+.|++++|++++.+|..|.+++.|+.|+
T Consensus 356 ~~L~~L~Ls~n~l~~~~p~~~~~~~~-L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 434 (968)
T PLN00113 356 NNLTVLDLSTNNLTGEIPEGLCSSGN-LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD 434 (968)
T ss_pred CCCcEEECCCCeeEeeCChhHhCcCC-CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEE
Confidence 45566666666666666665555553 66666666666666666666677777777777777777777777777788888
Q ss_pred ccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccccc
Q 047985 566 LGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELR 645 (930)
Q Consensus 566 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~ 645 (930)
+++|++++.+|..+..+++|+.|+|++|++.+.+|... ..++|+.||+++|++++.+|.. +..
T Consensus 435 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~---~~~~L~~L~ls~n~l~~~~~~~-~~~------------- 497 (968)
T PLN00113 435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF---GSKRLENLDLSRNQFSGAVPRK-LGS------------- 497 (968)
T ss_pred CcCCcccCccChhhccCCCCcEEECcCceeeeecCccc---ccccceEEECcCCccCCccChh-hhh-------------
Confidence 88888887777777778888888888888887776644 3578999999999999888753 221
Q ss_pred cccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCccccccCccccc
Q 047985 646 YMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLG 725 (930)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~ 725 (930)
++.|+.|+|++|+++|.+|..++++++|+.|+|++|.++|.+|..++
T Consensus 498 ---------------------------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 544 (968)
T PLN00113 498 ---------------------------------LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS 544 (968)
T ss_pred ---------------------------------hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHh
Confidence 23478999999999999999999999999999999999999999999
Q ss_pred ccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccccCCCCCCcCccCCcccCCCCCCCCCC
Q 047985 726 NLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRP 792 (930)
Q Consensus 726 ~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g~iP~~~~~~~~~~~s~~gn~~Lcg~~ 792 (930)
++++|+.|||++|+++|.+|..+..+++|++|++++|+++|.||..++|.+|...+|.||+++||.+
T Consensus 545 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred CcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.8e-58 Score=578.12 Aligned_cols=515 Identities=36% Similarity=0.588 Sum_probs=451.5
Q ss_pred CCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCcccc-CCCCCcEEEccCCCCCCCccccCCchhhhhhC
Q 047985 94 VHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEIL-ELSKLAYLDLSHNSYYDPVELRKPSLGNLADK 172 (930)
Q Consensus 94 ~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~ 172 (930)
.+++.|||++|.+.+. +|..+..+++|++|+|++|.++|.+|..+. .+++|++|+|++|
T Consensus 69 ~~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n------------------- 128 (968)
T PLN00113 69 SRVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN------------------- 128 (968)
T ss_pred CcEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC-------------------
Confidence 4677888888887775 677788888888888888888877776654 6667777777666
Q ss_pred CCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEE
Q 047985 173 LTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELD 252 (930)
Q Consensus 173 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 252 (930)
.+++.+|. +.+++|++|+|++|.+++.+|..++++++|++|++++|.+.+.+|..++++++|++|+
T Consensus 129 ------------~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 194 (968)
T PLN00113 129 ------------NFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT 194 (968)
T ss_pred ------------ccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeee
Confidence 34444443 3578999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccC
Q 047985 253 LLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSG 332 (930)
Q Consensus 253 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 332 (930)
+++|.+++.+|..++++++|++|+|++|++++.+|..++++++|++|++++|.+++.+|..++++++|++|++++|++.+
T Consensus 195 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 274 (968)
T PLN00113 195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274 (968)
T ss_pred ccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcchhh
Q 047985 333 QIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFL 412 (930)
Q Consensus 333 ~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l 412 (930)
.+|..+..+++|+.|++++|.+.+.+| ..+
T Consensus 275 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p--------------------------------------------------~~~ 304 (968)
T PLN00113 275 PIPPSIFSLQKLISLDLSDNSLSGEIP--------------------------------------------------ELV 304 (968)
T ss_pred cCchhHhhccCcCEEECcCCeeccCCC--------------------------------------------------hhH
Confidence 999999999999999999998876544 334
Q ss_pred hcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceee
Q 047985 413 KNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLD 492 (930)
Q Consensus 413 ~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~ 492 (930)
..+++|+.|++++|.+.+.+| ..+..+ ++|+.|+
T Consensus 305 ~~l~~L~~L~l~~n~~~~~~~---------------------------------------------~~~~~l-~~L~~L~ 338 (968)
T PLN00113 305 IQLQNLEILHLFSNNFTGKIP---------------------------------------------VALTSL-PRLQVLQ 338 (968)
T ss_pred cCCCCCcEEECCCCccCCcCC---------------------------------------------hhHhcC-CCCCEEE
Confidence 456667777777766654444 444455 7899999
Q ss_pred cccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEecccCcccc
Q 047985 493 LSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIR 572 (930)
Q Consensus 493 Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 572 (930)
+++|.+++.+|..++.+.. |+.|++++|++++.+|..+..+.+|+.|++++|++.+.+|..+..+++|+.|++++|+++
T Consensus 339 L~~n~l~~~~p~~l~~~~~-L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~ 417 (968)
T PLN00113 339 LWSNKFSGEIPKNLGKHNN-LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417 (968)
T ss_pred CcCCCCcCcCChHHhCCCC-CcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEee
Confidence 9999999999999999886 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceecccccccccccccc
Q 047985 573 DIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIP 652 (930)
Q Consensus 573 ~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~ 652 (930)
+.+|..+..++.|+.|++++|++.+.++... ..+++|+.|++++|++.|.+|... .
T Consensus 418 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~~~~~~p~~~-~--------------------- 473 (968)
T PLN00113 418 GELPSEFTKLPLVYFLDISNNNLQGRINSRK--WDMPSLQMLSLARNKFFGGLPDSF-G--------------------- 473 (968)
T ss_pred eECChhHhcCCCCCEEECcCCcccCccChhh--ccCCCCcEEECcCceeeeecCccc-c---------------------
Confidence 9999999999999999999999999887655 578999999999999998887421 0
Q ss_pred CCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCe
Q 047985 653 FNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLES 732 (930)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~ 732 (930)
...|+.||+++|+++|.+|..+.++++|+.|+|++|++++.+|..++++++|++
T Consensus 474 --------------------------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 527 (968)
T PLN00113 474 --------------------------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVS 527 (968)
T ss_pred --------------------------cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCE
Confidence 234899999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCcCcccCCccccCCCCCCeeecCCCcccccCCCCC-CcCccCCcccCCCCCCC
Q 047985 733 LDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGK-QFATFDKTSFDGNSGLC 789 (930)
Q Consensus 733 LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g~iP~~~-~~~~~~~~s~~gn~~Lc 789 (930)
|+|++|+++|.+|..+..+++|+.||+++|+++|.+|... .+.........+|+..+
T Consensus 528 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 528 LDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred EECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 9999999999999999999999999999999999999752 23333444455665444
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=9.2e-39 Score=327.59 Aligned_cols=493 Identities=29% Similarity=0.398 Sum_probs=352.1
Q ss_pred EEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEE
Q 047985 70 VIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLD 149 (930)
Q Consensus 70 v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 149 (930)
...+.+++|.+.- +.+ .+.++..|.+|++++|++.. +|++++.+..++.|+.++|+++ .+|.+++.+.+|+.|+
T Consensus 47 l~~lils~N~l~~-l~~--dl~nL~~l~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 47 LQKLILSHNDLEV-LRE--DLKNLACLTVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD 120 (565)
T ss_pred hhhhhhccCchhh-ccH--hhhcccceeEEEeccchhhh--CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence 5678899988763 333 78899999999999999874 7999999999999999999998 8999999999999999
Q ss_pred ccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEc
Q 047985 150 LSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDL 229 (930)
Q Consensus 150 Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 229 (930)
.++|.+ ..+++.++.+..|+.++..+|+++. .|..+.++.+|..+++.+|.+....|..+ +++.|++||.
T Consensus 121 ~s~n~~--------~el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~ 190 (565)
T KOG0472|consen 121 CSSNEL--------KELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDC 190 (565)
T ss_pred ccccce--------eecCchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhccc
Confidence 999964 5677788889999999999999876 56778888999999999999985555444 4999999999
Q ss_pred cCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCC-CCCCcCCcEEEccCCCCCC
Q 047985 230 SFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSS-LGNLTQLHWLSLASNDFSG 308 (930)
Q Consensus 230 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~ 308 (930)
..|.++ .+|+.++.+.+|+.|+|.+|.+. ..| .|+.|..|.+|+++.|++. .+|.+ ..++++|..|||..|+++
T Consensus 191 ~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk- 265 (565)
T KOG0472|consen 191 NSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK- 265 (565)
T ss_pred chhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-
Confidence 999886 67888999999999999999998 667 7999999999999999987 45544 458999999999999998
Q ss_pred ccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCchhHHh----hccccccEEEccCCcccccc
Q 047985 309 ELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFL----VNHKLLYHLFLSTNRLSLLT 384 (930)
Q Consensus 309 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~----~~~~~L~~L~Ls~n~l~~~~ 384 (930)
..|..+..+++|++||+++|.++ .+|.+++++ +|+.|.+.+|++.. +..++.. .-++.|+. .+..-.++...
T Consensus 266 e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs-~~~~dglS~se 341 (565)
T KOG0472|consen 266 EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRS-KIKDDGLSQSE 341 (565)
T ss_pred cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHH-hhccCCCCCCc
Confidence 78888989999999999999998 577889999 99999999998752 2111110 01122221 00000000000
Q ss_pred cccCCCCccccceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccccCCCC-CCceEEeccCccCcCCCCCCCc
Q 047985 385 KATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSM-QNFGHLNLSHNFLTGFDQHPNT 463 (930)
Q Consensus 385 ~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~l 463 (930)
..... ..+. ....-.......+.+.|++++-+++ .+|...++..- .-....+++.|++.
T Consensus 342 ~~~e~-------~~t~----~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-------- 401 (565)
T KOG0472|consen 342 GGTET-------AMTL----PSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-------- 401 (565)
T ss_pred ccccc-------cCCC----CCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh--------
Confidence 00000 0000 0000011223445566666666665 44544442111 11444555555544
Q ss_pred ceEEeccCcCCCCCchHHhhcccccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEcc
Q 047985 464 VNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLS 543 (930)
Q Consensus 464 ~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 543 (930)
++|..+..+..-.+.+++++|.++ -+|..+..+++ |+.|+|++|-+. .+|..++.+..|+.|+++
T Consensus 402 ------------elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~k-Lt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS 466 (565)
T KOG0472|consen 402 ------------ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQK-LTFLDLSNNLLN-DLPEEMGSLVRLQTLNLS 466 (565)
T ss_pred ------------hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhc-ceeeecccchhh-hcchhhhhhhhhheeccc
Confidence 556555544222344555555554 66667777775 777777777766 677777777777777887
Q ss_pred CccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcc
Q 047985 544 DNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTG 623 (930)
Q Consensus 544 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g 623 (930)
.|+|. .+|..+.....|+.+-.++|++....|..+.++.+|.+|+|.+|.+..+.|. . .++++|++|++++|+|.
T Consensus 467 ~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~-L--gnmtnL~hLeL~gNpfr- 541 (565)
T KOG0472|consen 467 FNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPI-L--GNMTNLRHLELDGNPFR- 541 (565)
T ss_pred ccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChh-h--ccccceeEEEecCCccC-
Confidence 77776 5677766667777777777787777777777788888888888877765432 2 57788888888888886
Q ss_pred cCChH
Q 047985 624 KLPSM 628 (930)
Q Consensus 624 ~ip~~ 628 (930)
.|..
T Consensus 542 -~Pr~ 545 (565)
T KOG0472|consen 542 -QPRH 545 (565)
T ss_pred -CCHH
Confidence 4543
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1e-38 Score=327.19 Aligned_cols=246 Identities=31% Similarity=0.431 Sum_probs=157.9
Q ss_pred CCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhh
Q 047985 92 KLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLAD 171 (930)
Q Consensus 92 ~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~ 171 (930)
.-.-|..|++++|.+.. +.+.+.++..|.+|++++|.++ ..|++++.+..++.|+.++|++ ..+|..+.
T Consensus 43 ~qv~l~~lils~N~l~~--l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~l--------s~lp~~i~ 111 (565)
T KOG0472|consen 43 EQVDLQKLILSHNDLEV--LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKL--------SELPEQIG 111 (565)
T ss_pred hhcchhhhhhccCchhh--ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchH--------hhccHHHh
Confidence 34567889999999864 5567899999999999999998 8888999999999999999964 45666666
Q ss_pred CCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEE
Q 047985 172 KLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKEL 251 (930)
Q Consensus 172 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 251 (930)
.+.+|++++++.|.+.. .|+.++.+..|+.++..+|+++ ..|.++.++.+|..+++.+|++....|+.+. ++.|++|
T Consensus 112 s~~~l~~l~~s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~l 188 (565)
T KOG0472|consen 112 SLISLVKLDCSSNELKE-LPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHL 188 (565)
T ss_pred hhhhhhhhhccccceee-cCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhc
Confidence 66677777777666543 3445555666666666666665 4455566666666666666666554444444 5666666
Q ss_pred EccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccc-cccccceeecccccc
Q 047985 252 DLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFG-NLRSLRTLDVYECKF 330 (930)
Q Consensus 252 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~n~l 330 (930)
+.-.|.++ .+|..++.+.+|+.|+|..|++. ..| .|..+..|++|.++.|++. .+|++.. .++++.+||+.+|++
T Consensus 189 d~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNkl 264 (565)
T KOG0472|consen 189 DCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKL 264 (565)
T ss_pred ccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccc
Confidence 66665554 55555666666666666666654 333 4555555666666555554 3333332 555555555555555
Q ss_pred cCCCcccccCCCCCCEEEccCCCCCC
Q 047985 331 SGQIPSSLSNLTHLSFLDFSLNNFSG 356 (930)
Q Consensus 331 ~~~~p~~l~~l~~L~~L~Ls~n~l~~ 356 (930)
. ..|..+.-+.+|+.||+++|.+++
T Consensus 265 k-e~Pde~clLrsL~rLDlSNN~is~ 289 (565)
T KOG0472|consen 265 K-EVPDEICLLRSLERLDLSNNDISS 289 (565)
T ss_pred c-cCchHHHHhhhhhhhcccCCcccc
Confidence 5 445555555555555555555543
No 5
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-36 Score=338.72 Aligned_cols=484 Identities=28% Similarity=0.367 Sum_probs=292.7
Q ss_pred EEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCE
Q 047985 123 YLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTT 202 (930)
Q Consensus 123 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 202 (930)
.+|++..++. .||..+-.-..++.|+++.|.+.+ ..+ +++.+ .-+|+.
T Consensus 2 ~vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~------~pl-~~~~~------------------------~v~L~~ 49 (1081)
T KOG0618|consen 2 HVDASDEQLE-LIPEQILNNEALQILNLRRNSLLS------RPL-EFVEK------------------------RVKLKS 49 (1081)
T ss_pred CcccccccCc-ccchhhccHHHHHhhhcccccccc------Cch-HHhhh------------------------eeeeEE
Confidence 4677777777 778777665668888888884311 001 11222 223555
Q ss_pred EEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCC
Q 047985 203 LSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRF 282 (930)
Q Consensus 203 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 282 (930)
|++++|.+. .+|..+..+.+|+.|+++.|.+. ..|....++.+|++|.|..|.+. ..|..+..+++|++|++++|++
T Consensus 50 l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f 126 (1081)
T KOG0618|consen 50 LDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHF 126 (1081)
T ss_pred eeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhcc
Confidence 555555544 45555556666666666666554 33455566666666666666665 5566666666666666666665
Q ss_pred CCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCchhH
Q 047985 283 LGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDI 362 (930)
Q Consensus 283 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 362 (930)
. .+|..+..++.+..+..++|..... ++... ++.+++..|.+.+.++..+..++. .|+|.+|.+. ....
T Consensus 127 ~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~dl-- 195 (1081)
T KOG0618|consen 127 G-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLDL-- 195 (1081)
T ss_pred C-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhhh--
Confidence 4 5566666666666666666622212 12222 566666666666666666555555 5666666654 2111
Q ss_pred HhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccccCCCCC
Q 047985 363 FLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQ 442 (930)
Q Consensus 363 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~ 442 (930)
..+.+|+.|....|++..... .-++|+.|+.++|.++...+.. .-.
T Consensus 196 --s~~~~l~~l~c~rn~ls~l~~----------------------------~g~~l~~L~a~~n~l~~~~~~p----~p~ 241 (1081)
T KOG0618|consen 196 --SNLANLEVLHCERNQLSELEI----------------------------SGPSLTALYADHNPLTTLDVHP----VPL 241 (1081)
T ss_pred --hhccchhhhhhhhcccceEEe----------------------------cCcchheeeeccCcceeecccc----ccc
Confidence 334444444444443222110 1233444444444444211111 112
Q ss_pred CceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceeecccccccCcCcccccccccCCceeecCCCc
Q 047985 443 NFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNK 522 (930)
Q Consensus 443 ~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~ 522 (930)
++++++++.|+++ .+|++++.+ .+|+.+++.+|+++ .+|..+...++ |+.|.+.+|.
T Consensus 242 -------------------nl~~~dis~n~l~-~lp~wi~~~-~nle~l~~n~N~l~-~lp~ri~~~~~-L~~l~~~~ne 298 (1081)
T KOG0618|consen 242 -------------------NLQYLDISHNNLS-NLPEWIGAC-ANLEALNANHNRLV-ALPLRISRITS-LVSLSAAYNE 298 (1081)
T ss_pred -------------------cceeeecchhhhh-cchHHHHhc-ccceEecccchhHH-hhHHHHhhhhh-HHHHHhhhhh
Confidence 3344444444444 566777777 77888888888775 56666666664 7777888887
Q ss_pred cccccCcccCCCCCccEEEccCccccccCCccccCCCC-CcEecccCccccccCcccccCCCCCcEEEccCCcccccCCC
Q 047985 523 FSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSN-LEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIRE 601 (930)
Q Consensus 523 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 601 (930)
+. -+|.......+|++|+|..|+|....+..|..... |+.|+.+.|++.......=...+.|+.|++.+|.++...-.
T Consensus 299 l~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p 377 (1081)
T KOG0618|consen 299 LE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP 377 (1081)
T ss_pred hh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh
Confidence 77 56666666777888888888877444434444433 67777777777766422223566778888888888766544
Q ss_pred CCccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccccccccccccCCCCCccceeeeEeeeccccccccccccc
Q 047985 602 PKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDI 681 (930)
Q Consensus 602 ~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (930)
.+ .+++.|++|+|++|++. ++|...+.+|. .
T Consensus 378 ~l--~~~~hLKVLhLsyNrL~-~fpas~~~kle----------------------------------------------~ 408 (1081)
T KOG0618|consen 378 VL--VNFKHLKVLHLSYNRLN-SFPASKLRKLE----------------------------------------------E 408 (1081)
T ss_pred hh--ccccceeeeeecccccc-cCCHHHHhchH----------------------------------------------H
Confidence 43 46778888888888875 67766554433 2
Q ss_pred ccEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccC-CccccCCCCCCeeecC
Q 047985 682 LTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQI-PQQLVELTFLEFFNVS 760 (930)
Q Consensus 682 L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~i-p~~l~~L~~L~~L~ls 760 (930)
|+.|+||+|.++ .+|.++.+++.|++|..-+|++. ..| .+.++++|+.+|+|.|+|+-.+ |.... -+.|++||++
T Consensus 409 LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlS 484 (1081)
T KOG0618|consen 409 LEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLS 484 (1081)
T ss_pred hHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-Ccccceeecc
Confidence 667777888877 67777777888888887777776 556 6777788888888888876443 33222 2677888888
Q ss_pred CCc
Q 047985 761 DNH 763 (930)
Q Consensus 761 ~N~ 763 (930)
+|.
T Consensus 485 GN~ 487 (1081)
T KOG0618|consen 485 GNT 487 (1081)
T ss_pred CCc
Confidence 775
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-34 Score=309.60 Aligned_cols=365 Identities=29% Similarity=0.313 Sum_probs=210.9
Q ss_pred CEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCC
Q 047985 97 EWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNL 176 (930)
Q Consensus 97 ~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L 176 (930)
+.||+++|.+... -+..|.++++|+.+++.+|.++ .||...+...+|+.|+|.+|
T Consensus 81 ~~LdlsnNkl~~i-d~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N----------------------- 135 (873)
T KOG4194|consen 81 QTLDLSNNKLSHI-DFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHN----------------------- 135 (873)
T ss_pred eeeeccccccccC-cHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeecc-----------------------
Confidence 3455555555544 3444555555555555555555 55544444444555555554
Q ss_pred CEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCC
Q 047985 177 KELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQN 256 (930)
Q Consensus 177 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 256 (930)
.|+..-.+.+..++.|+.|||+.|.++..-..+|..-.++++|+|++|.|+..-...|..+.+|..|.|++|
T Consensus 136 --------~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN 207 (873)
T KOG4194|consen 136 --------LISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN 207 (873)
T ss_pred --------ccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC
Confidence 455555566666677777777777766444445555566777777777777666666777777777777777
Q ss_pred CCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcc
Q 047985 257 NLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPS 336 (930)
Q Consensus 257 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 336 (930)
+++...+..|.++++|+.|+|..|++.-.---.|.++++|+.|.|..|.+...-...|..+.++++|+|+.|+++..-..
T Consensus 208 rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g 287 (873)
T KOG4194|consen 208 RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEG 287 (873)
T ss_pred cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcc
Confidence 77765566666677777777777776533334567777777777777777666666666677777777777777655555
Q ss_pred cccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcchhhhcCC
Q 047985 337 SLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQH 416 (930)
Q Consensus 337 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~ 416 (930)
++.+++.|+.|++++|.+...-+ +....++
T Consensus 288 ~lfgLt~L~~L~lS~NaI~rih~--------------------------------------------------d~Wsftq 317 (873)
T KOG4194|consen 288 WLFGLTSLEQLDLSYNAIQRIHI--------------------------------------------------DSWSFTQ 317 (873)
T ss_pred cccccchhhhhccchhhhheeec--------------------------------------------------chhhhcc
Confidence 66666666666666666542111 1122334
Q ss_pred CcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceeecccc
Q 047985 417 HLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYN 496 (930)
Q Consensus 417 ~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N 496 (930)
+|++|+|++|+|+.--+..+ ..+ ..|++|.|++|
T Consensus 318 kL~~LdLs~N~i~~l~~~sf---------------------------------------------~~L-~~Le~LnLs~N 351 (873)
T KOG4194|consen 318 KLKELDLSSNRITRLDEGSF---------------------------------------------RVL-SQLEELNLSHN 351 (873)
T ss_pred cceeEeccccccccCChhHH---------------------------------------------HHH-HHhhhhccccc
Confidence 44444444444442222211 122 44445555555
Q ss_pred cccCcCcccccccccCCceeecCCCccccccCc---ccCCCCCccEEEccCccccccCCccccCCCCCcEecccCccccc
Q 047985 497 NLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPD---NLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRD 573 (930)
Q Consensus 497 ~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 573 (930)
.+...-...|..+.+ |+.|||++|.+++.+.+ .|..+++|+.|+|.+|++..+...+|.++..|+.|||.+|.|..
T Consensus 352 si~~l~e~af~~lss-L~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 352 SIDHLAEGAFVGLSS-LHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIAS 430 (873)
T ss_pred chHHHHhhHHHHhhh-hhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCccee
Confidence 444333334444442 55555555555444332 34445666666666666665555566666666666666666666
Q ss_pred cCcccccCCCCCcEEEccC
Q 047985 574 IFPSWLGTLPDLNVLILKS 592 (930)
Q Consensus 574 ~~p~~l~~l~~L~~L~L~~ 592 (930)
+-|..|..+ .|+.|.+..
T Consensus 431 Iq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 431 IQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred ecccccccc-hhhhhhhcc
Confidence 666666655 555555443
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-34 Score=309.95 Aligned_cols=377 Identities=23% Similarity=0.266 Sum_probs=220.4
Q ss_pred CEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCC
Q 047985 177 KELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQN 256 (930)
Q Consensus 177 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 256 (930)
+.|++++|.++...+..|.++++|+++++..|.++ .+|.......+|+.|+|.+|.|+..-.+.+..++.|+.|||+.|
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 34555555555555555555555555555555554 34443333344555555555555544455555555555555555
Q ss_pred CCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcc
Q 047985 257 NLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPS 336 (930)
Q Consensus 257 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 336 (930)
.|+..--..|..-.++++|+|++|+|+..-...|..+.+|..|.|+.|+++...+..|.++++|+.|+|..|++.-.--.
T Consensus 160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l 239 (873)
T KOG4194|consen 160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL 239 (873)
T ss_pred hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh
Confidence 55432223344444555555555555544444455555555555555555544444444455555555555544322222
Q ss_pred cccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcchhhhcCC
Q 047985 337 SLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQH 416 (930)
Q Consensus 337 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~ 416 (930)
.|.++++|+.|.+..|.+. .+.+ ..|..+.
T Consensus 240 tFqgL~Sl~nlklqrN~I~--------------------------kL~D------------------------G~Fy~l~ 269 (873)
T KOG4194|consen 240 TFQGLPSLQNLKLQRNDIS--------------------------KLDD------------------------GAFYGLE 269 (873)
T ss_pred hhcCchhhhhhhhhhcCcc--------------------------cccC------------------------cceeeec
Confidence 3344444444444444332 2211 1234556
Q ss_pred CcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceeecccc
Q 047985 417 HLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYN 496 (930)
Q Consensus 417 ~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N 496 (930)
++++|+|+.|++...--.|++ .++.|+.|++|+|.+..+ .+ +.. ...++|++|||++|
T Consensus 270 kme~l~L~~N~l~~vn~g~lf--gLt~L~~L~lS~NaI~ri------------------h~-d~W-sftqkL~~LdLs~N 327 (873)
T KOG4194|consen 270 KMEHLNLETNRLQAVNEGWLF--GLTSLEQLDLSYNAIQRI------------------HI-DSW-SFTQKLKELDLSSN 327 (873)
T ss_pred ccceeecccchhhhhhccccc--ccchhhhhccchhhhhee------------------ec-chh-hhcccceeEecccc
Confidence 666666766666655555555 666666666666655532 11 111 22267888888888
Q ss_pred cccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCc---cccCCCCCcEecccCccccc
Q 047985 497 NLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPR---SLANCSNLEFLDLGDNQIRD 573 (930)
Q Consensus 497 ~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~ 573 (930)
+|+...+..|..+.. |++|+|++|+++..-...|..+.+|+.|||++|.+++.+.+ .|..+++|+.|++.+|++..
T Consensus 328 ~i~~l~~~sf~~L~~-Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~ 406 (873)
T KOG4194|consen 328 RITRLDEGSFRVLSQ-LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKS 406 (873)
T ss_pred ccccCChhHHHHHHH-hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeee
Confidence 888777777777775 88888888888765556677778888888888888776543 47778888888888888888
Q ss_pred cCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHH
Q 047985 574 IFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAF 630 (930)
Q Consensus 574 ~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~ 630 (930)
+.-..|.+++.|++|+|.+|.|..+-|..+ ..+ .|+.|-+..-.|-......|+
T Consensus 407 I~krAfsgl~~LE~LdL~~NaiaSIq~nAF--e~m-~Lk~Lv~nSssflCDCql~Wl 460 (873)
T KOG4194|consen 407 IPKRAFSGLEALEHLDLGDNAIASIQPNAF--EPM-ELKELVMNSSSFLCDCQLKWL 460 (873)
T ss_pred cchhhhccCcccceecCCCCcceeeccccc--ccc-hhhhhhhcccceEEeccHHHH
Confidence 877888888888888888888887766655 344 677776655555444333333
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-35 Score=330.28 Aligned_cols=513 Identities=27% Similarity=0.378 Sum_probs=311.2
Q ss_pred EEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCC
Q 047985 98 WLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLK 177 (930)
Q Consensus 98 ~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~ 177 (930)
.+|++...+. .||..+..-..++.|+++.|.+-...-+.+.+.-+|+.||++.|.+ ..+|..+..+.+|+
T Consensus 2 ~vd~s~~~l~--~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~--------~~fp~~it~l~~L~ 71 (1081)
T KOG0618|consen 2 HVDASDEQLE--LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQI--------SSFPIQITLLSHLR 71 (1081)
T ss_pred CcccccccCc--ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeecccccc--------ccCCchhhhHHHHh
Confidence 3567777665 3788887777799999999987633334445566699999999954 55666666677777
Q ss_pred EEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCC
Q 047985 178 ELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNN 257 (930)
Q Consensus 178 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 257 (930)
.|.++.|.+.. .|.+..++.+|++|.|.+|.+. ..|.++..+++|++|++++|.+. .+|..+..++.++.+..++|.
T Consensus 72 ~ln~s~n~i~~-vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~ 148 (1081)
T KOG0618|consen 72 QLNLSRNYIRS-VPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNE 148 (1081)
T ss_pred hcccchhhHhh-Cchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcch
Confidence 77777766544 3455556666666666666555 45566666666666666666554 345555555555555555552
Q ss_pred CCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCccc
Q 047985 258 LSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSS 337 (930)
Q Consensus 258 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 337 (930)
.... ++... ++.+++..|.+.+.++..+..++. .|+|..|.+. .. .
T Consensus 149 ~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~------------------------d 194 (1081)
T KOG0618|consen 149 KIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VL------------------------D 194 (1081)
T ss_pred hhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh---hh------------------------h
Confidence 1111 11111 455555555555555444444444 4555555443 11 2
Q ss_pred ccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcchhhhcCCC
Q 047985 338 LSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHH 417 (930)
Q Consensus 338 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~~ 417 (930)
+..+.+|+.|....|++.... ...++|+.|+.++|.+. .......+..+++++++.+++..+|.|+..+.+
T Consensus 195 ls~~~~l~~l~c~rn~ls~l~------~~g~~l~~L~a~~n~l~---~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~n 265 (1081)
T KOG0618|consen 195 LSNLANLEVLHCERNQLSELE------ISGPSLTALYADHNPLT---TLDVHPVPLNLQYLDISHNNLSNLPEWIGACAN 265 (1081)
T ss_pred hhhccchhhhhhhhcccceEE------ecCcchheeeeccCcce---eeccccccccceeeecchhhhhcchHHHHhccc
Confidence 334444444444444443111 23344555555555443 111222345566666666666666677766666
Q ss_pred cCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceeeccccc
Q 047985 418 LELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNN 497 (930)
Q Consensus 418 L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~ 497 (930)
|+.++..+|.++ .+|..+... .+|+.|++.+|.
T Consensus 266 le~l~~n~N~l~----------------------------------------------~lp~ri~~~-~~L~~l~~~~ne 298 (1081)
T KOG0618|consen 266 LEALNANHNRLV----------------------------------------------ALPLRISRI-TSLVSLSAAYNE 298 (1081)
T ss_pred ceEecccchhHH----------------------------------------------hhHHHHhhh-hhHHHHHhhhhh
Confidence 666666666653 344444444 566666666666
Q ss_pred ccCcCcccccccccCCceeecCCCccccccCccc-CCCC-CccEEEccCccccccCCccccCCCCCcEecccCccccccC
Q 047985 498 LSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNL-LKGN-ILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIF 575 (930)
Q Consensus 498 l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~-~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 575 (930)
+. .+|.....+.. |++|+|..|+|. ..|+.+ .... +|+.|+.+.|++.......=.....|+.|.+.+|.+++..
T Consensus 299 l~-yip~~le~~~s-L~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c 375 (1081)
T KOG0618|consen 299 LE-YIPPFLEGLKS-LRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC 375 (1081)
T ss_pred hh-hCCCcccccce-eeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc
Confidence 65 44555555554 666777666665 344322 2222 2566666666665332222234566778888888888776
Q ss_pred cccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccccccccccccCCC
Q 047985 576 PSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNE 655 (930)
Q Consensus 576 p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~ 655 (930)
-+.+.+.++|++|+|++|++....... ..+++.|++|+||+|+++ .+|.. ...+.
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL~~fpas~--~~kle~LeeL~LSGNkL~-~Lp~t-va~~~--------------------- 430 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRLNSFPASK--LRKLEELEELNLSGNKLT-TLPDT-VANLG--------------------- 430 (1081)
T ss_pred hhhhccccceeeeeecccccccCCHHH--HhchHHhHHHhcccchhh-hhhHH-HHhhh---------------------
Confidence 667777788888888888776553222 256778888888888887 56633 33322
Q ss_pred CCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCccccc-cCcccccccCCCCeee
Q 047985 656 GNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHG-HIPSCLGNLTDLESLD 734 (930)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g-~ip~~l~~L~~L~~Ld 734 (930)
.|++|...+|++. ..| ++.+++.|+.+|+|+|+|+. .+|..... ++|++||
T Consensus 431 -------------------------~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLd 482 (1081)
T KOG0618|consen 431 -------------------------RLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLD 482 (1081)
T ss_pred -------------------------hhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceee
Confidence 3566777788886 667 88999999999999999986 34444333 7999999
Q ss_pred CCCCcCcccCCccccCCCCCCeeecCCCcccccCCCCCC
Q 047985 735 LSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQ 773 (930)
Q Consensus 735 Ls~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g~iP~~~~ 773 (930)
|++|.-.-.--..|..+.++..+++.-| .+|.+.+
T Consensus 483 lSGN~~l~~d~~~l~~l~~l~~~~i~~~----~~~d~~~ 517 (1081)
T KOG0618|consen 483 LSGNTRLVFDHKTLKVLKSLSQMDITLN----NTPDGNV 517 (1081)
T ss_pred ccCCcccccchhhhHHhhhhhheecccC----CCCcccc
Confidence 9999843333445666777777777776 5666543
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=3.8e-33 Score=299.43 Aligned_cols=374 Identities=30% Similarity=0.450 Sum_probs=216.0
Q ss_pred cCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhh
Q 047985 91 FKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLA 170 (930)
Q Consensus 91 ~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l 170 (930)
+-|+..+-.|+++|+|+|...|.....++.++.|.|....+. .+|.+++.|.+|++|.+++|++..
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~------------- 69 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLIS------------- 69 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHh-------------
Confidence 456778888999999988778888888888888888888877 788888888888888888884311
Q ss_pred hCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCC-CCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCC
Q 047985 171 DKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLR-GRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLK 249 (930)
Q Consensus 171 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 249 (930)
+-..++.++.|+.+.+..|++. .-+|..+..+..|+.||||+|++. ..|..+..-+++.
T Consensus 70 -------------------vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~i 129 (1255)
T KOG0444|consen 70 -------------------VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSI 129 (1255)
T ss_pred -------------------hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcE
Confidence 1123556677777778777775 236666777777777777777765 3455566666666
Q ss_pred EEEccCCCCCCCcch-hhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccc
Q 047985 250 ELDLLQNNLSGELPN-SIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYEC 328 (930)
Q Consensus 250 ~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n 328 (930)
+|+|++|+|. .||. .|.+++.|-.||||+|++. .+|..+..+.+|++|+|++|.+...--..+..+++|++|.+++.
T Consensus 130 VLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~T 207 (1255)
T KOG0444|consen 130 VLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNT 207 (1255)
T ss_pred EEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccc
Confidence 6666666666 3333 3445666666666666654 34444555555555555555544322222223344444444443
Q ss_pred ccc-CCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCC
Q 047985 329 KFS-GQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTE 407 (930)
Q Consensus 329 ~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ 407 (930)
+-+ ..+|.++..+.+|..+|++.|+ +..
T Consensus 208 qRTl~N~Ptsld~l~NL~dvDlS~N~---------------------------------------------------Lp~ 236 (1255)
T KOG0444|consen 208 QRTLDNIPTSLDDLHNLRDVDLSENN---------------------------------------------------LPI 236 (1255)
T ss_pred cchhhcCCCchhhhhhhhhccccccC---------------------------------------------------CCc
Confidence 322 1233333333333333333332 223
Q ss_pred cchhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccc
Q 047985 408 IPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNR 487 (930)
Q Consensus 408 ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~ 487 (930)
+|+.+.++++|+.|+||+|+|+. + .-..... .+
T Consensus 237 vPecly~l~~LrrLNLS~N~ite--------------------------L--------------------~~~~~~W-~~ 269 (1255)
T KOG0444|consen 237 VPECLYKLRNLRRLNLSGNKITE--------------------------L--------------------NMTEGEW-EN 269 (1255)
T ss_pred chHHHhhhhhhheeccCcCceee--------------------------e--------------------eccHHHH-hh
Confidence 45555555666666666665542 1 1111111 34
Q ss_pred cceeecccccccCcCcccccccccCCceeecCCCccc-cccCcccCCCCCccEEEccCccccccCCccccCCCCCcEecc
Q 047985 488 LESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFS-GTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDL 566 (930)
Q Consensus 488 L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 566 (930)
|++|++|.|+++ .+|+++.+++. |+.|.+.+|+++ .-||..++++..|+.+..++|.+. ..|+.++.|..|+.|.|
T Consensus 270 lEtLNlSrNQLt-~LP~avcKL~k-L~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L 346 (1255)
T KOG0444|consen 270 LETLNLSRNQLT-VLPDAVCKLTK-LTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKL 346 (1255)
T ss_pred hhhhccccchhc-cchHHHhhhHH-HHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcc
Confidence 555555555554 44555555554 555555555543 235555555666666666665555 45566666666666666
Q ss_pred cCccccccCcccccCCCCCcEEEccCCcccccCCCC
Q 047985 567 GDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREP 602 (930)
Q Consensus 567 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 602 (930)
+.|++... |+.+.-++.|.+|+|+.|+-.-..|.+
T Consensus 347 ~~NrLiTL-PeaIHlL~~l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 347 DHNRLITL-PEAIHLLPDLKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred cccceeec-hhhhhhcCCcceeeccCCcCccCCCCc
Confidence 66665543 556666666666666666544444433
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=6.9e-33 Score=297.46 Aligned_cols=251 Identities=27% Similarity=0.406 Sum_probs=205.1
Q ss_pred CcEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcE
Q 047985 68 GHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAY 147 (930)
Q Consensus 68 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 147 (930)
.-|+.+|+++|.++|.--| .....++.++.|.|....+. .+|..++.+.+|++|.+++|++. .+-.++..|+.|+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP-~~v~qMt~~~WLkLnrt~L~--~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFP-HDVEQMTQMTWLKLNRTKLE--QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRS 82 (1255)
T ss_pred ceeecccccCCcCCCCcCc-hhHHHhhheeEEEechhhhh--hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHH
Confidence 3589999999999975433 37889999999999998886 48999999999999999999988 56667888999999
Q ss_pred EEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEE
Q 047985 148 LDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHL 227 (930)
Q Consensus 148 L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 227 (930)
+++.+|.+. ...+|..+.++..|+.|||++|++. ..|..+..-+++-.|
T Consensus 83 v~~R~N~LK------------------------------nsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 83 VIVRDNNLK------------------------------NSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVL 131 (1255)
T ss_pred Hhhhccccc------------------------------cCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEE
Confidence 999988431 2335666777788888888888887 678888888888888
Q ss_pred EccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCC
Q 047985 228 DLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFS 307 (930)
Q Consensus 228 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 307 (930)
+||+|+|..+....+.+++.|-.|+|++|++. .+|..+..+.+|++|+|++|.+.-.--..+..+++|++|.+++.+-+
T Consensus 132 NLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 132 NLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT 210 (1255)
T ss_pred EcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch
Confidence 88888888665566778888888899999887 66777888889999999998876443345566778888888887644
Q ss_pred -CccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCC
Q 047985 308 -GELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFS 355 (930)
Q Consensus 308 -~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 355 (930)
..+|.++..+.+|..+|++.|.+. .+|+.+.++++|+.|+|++|+++
T Consensus 211 l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 211 LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred hhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee
Confidence 367888999999999999999988 78888999999999999998876
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=3.1e-25 Score=228.46 Aligned_cols=412 Identities=25% Similarity=0.287 Sum_probs=213.0
Q ss_pred CCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccC-CCCCCCCCCCCCCCcCCcEEEc
Q 047985 223 RLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSL-NRFLGKVPSSLGNLTQLHWLSL 301 (930)
Q Consensus 223 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L 301 (930)
.-..++|..|+|+...+.+|+.+++|+.|+|++|+|+..-|.+|..+++|..|-+.+ |+|+......|+++..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 345566666666666666666666666666666666666666666666666555544 6666555566677777777777
Q ss_pred cCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCccc
Q 047985 302 ASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLS 381 (930)
Q Consensus 302 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 381 (930)
.-|++.-.....|..+++|..|.+.+|.+...--..|..+..++.+.+..|.+...-...+. .. ++..+
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl-------a~-~~a~~--- 216 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWL-------AD-DLAMN--- 216 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchh-------hh-HHhhc---
Confidence 77777666666677777777777777776633333666677777777777665322111100 00 00000
Q ss_pred ccccccCCCCccccceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCC
Q 047985 382 LLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHP 461 (930)
Q Consensus 382 ~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 461 (930)
|..++......-..+.+.++...-+..+.
T Consensus 217 ---------------------------~ietsgarc~~p~rl~~~Ri~q~~a~kf~------------------------ 245 (498)
T KOG4237|consen 217 ---------------------------PIETSGARCVSPYRLYYKRINQEDARKFL------------------------ 245 (498)
T ss_pred ---------------------------hhhcccceecchHHHHHHHhcccchhhhh------------------------
Confidence 00001111111111111111111111100
Q ss_pred CcceEEeccCcCCCCCchHHhhcccccceeecccccccCcCc-ccccccccCCceeecCCCccccccCcccCCCCCccEE
Q 047985 462 NTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLP-QCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVI 540 (930)
Q Consensus 462 ~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p-~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 540 (930)
+.. ..+..--.+.+...++-| .+|..++. |+.|+|++|++++.-+.+|.+...+++|
T Consensus 246 --------------------c~~-esl~s~~~~~d~~d~~cP~~cf~~L~~-L~~lnlsnN~i~~i~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 246 --------------------CSL-ESLPSRLSSEDFPDSICPAKCFKKLPN-LRKLNLSNNKITRIEDGAFEGAAELQEL 303 (498)
T ss_pred --------------------hhH-HhHHHhhccccCcCCcChHHHHhhccc-ceEeccCCCccchhhhhhhcchhhhhhh
Confidence 000 011111111122222222 34666664 7777777777777777777777777777
Q ss_pred EccCccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCccccc-------------CCCCCccCC
Q 047985 541 DLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGL-------------IREPKTDCG 607 (930)
Q Consensus 541 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-------------~~~~~~~~~ 607 (930)
.|..|++...-...|.++..|+.|+|.+|+|+...|..|..+.+|.+|+|-.|++.-. .......|+
T Consensus 304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq 383 (498)
T KOG4237|consen 304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQ 383 (498)
T ss_pred hcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCC
Confidence 7777777766666777788888888888888887777787777888888777765311 000000121
Q ss_pred -CCCceEEECCCCcCcc---cCChHHHhhcccceeccccccccccccccCCCCCccceeeeEeeeccccccccccccccc
Q 047985 608 -FPKLRIIDLSKNRFTG---KLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILT 683 (930)
Q Consensus 608 -l~~L~~LdLs~N~l~g---~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 683 (930)
...++.++++++.+.. .-|++ ..+....+-+ ..-.-....+..++++...-..++|...+
T Consensus 384 ~p~~~~~~~~~dv~~~~~~c~~~ee----------~~~~~s~~cP------~~c~c~~tVvRcSnk~lk~lp~~iP~d~t 447 (498)
T KOG4237|consen 384 SPGFVRQIPISDVAFGDFRCGGPEE----------LGCLTSSPCP------PPCTCLDTVVRCSNKLLKLLPRGIPVDVT 447 (498)
T ss_pred CCchhccccchhccccccccCCccc----------cCCCCCCCCC------CCcchhhhhHhhcccchhhcCCCCCchhH
Confidence 2245566666655431 11111 0000000000 00001112223334444444445555566
Q ss_pred EEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCC
Q 047985 684 AVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNN 738 (930)
Q Consensus 684 ~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N 738 (930)
++++.+|.++ .+|.+ .+.+| .+|+|+|+++..--..|.+|++|.+|-||+|
T Consensus 448 elyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 448 ELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred HHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 6666666665 55554 44555 5566666555444455555555555555554
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.7e-21 Score=247.14 Aligned_cols=359 Identities=22% Similarity=0.250 Sum_probs=275.2
Q ss_pred CcEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCC-----CCCchhccCCC-CCCEEEccCCCCCccCCccccC
Q 047985 68 GHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDG-----SEIPPEIINLS-SLSYLNLSSAAFSGQIPSEILE 141 (930)
Q Consensus 68 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~-----~~ip~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~ 141 (930)
.+|..+.+.-..+........++.++++|+.|.+..+.+.. ..+|..+..++ +|+.|++.++.+. .+|..+ .
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~ 609 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-R 609 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-C
Confidence 46777666544443221122368899999999997664321 13677777764 6999999999886 788777 5
Q ss_pred CCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCC
Q 047985 142 LSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNI 221 (930)
Q Consensus 142 l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 221 (930)
..+|++|++++|.+ ..++..+..+++|+.|+++++.....+|. ++.+++|++|+|++|.....+|..+.++
T Consensus 610 ~~~L~~L~L~~s~l--------~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L 680 (1153)
T PLN03210 610 PENLVKLQMQGSKL--------EKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYL 680 (1153)
T ss_pred ccCCcEEECcCccc--------cccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhcc
Confidence 78999999999964 34556678899999999998876666664 8889999999999998777899999999
Q ss_pred CCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEc
Q 047985 222 TRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSL 301 (930)
Q Consensus 222 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 301 (930)
++|+.|++++|..-..+|..+ ++++|+.|++++|...+.+|.. .++|+.|++++|.+. .+|..+ .+++|++|++
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l 754 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELIL 754 (1153)
T ss_pred CCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccc
Confidence 999999999986556677655 7899999999999776666643 468999999999976 566655 6788999988
Q ss_pred cCCCCC-------CccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEE
Q 047985 302 ASNDFS-------GELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLF 374 (930)
Q Consensus 302 s~N~l~-------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~ 374 (930)
.++... ...+......++|+.|++++|...+.+|..++++++|+.|++++|...+.+|.. ..+++|+.|+
T Consensus 755 ~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~---~~L~sL~~L~ 831 (1153)
T PLN03210 755 CEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG---INLESLESLD 831 (1153)
T ss_pred cccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC---CCccccCEEE
Confidence 874321 112222334578999999999888889999999999999999998766667654 2688999999
Q ss_pred ccCCcccccccccCCCCccccceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCc
Q 047985 375 LSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHN 452 (930)
Q Consensus 375 Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N 452 (930)
+++|.. ....+. ...+++.|+++++.+..+|.++..+++|+.|++++|.-...+|.... .+++|+.+++++|
T Consensus 832 Ls~c~~--L~~~p~--~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~--~L~~L~~L~l~~C 903 (1153)
T PLN03210 832 LSGCSR--LRTFPD--ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNIS--KLKHLETVDFSDC 903 (1153)
T ss_pred CCCCCc--cccccc--cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccc--cccCCCeeecCCC
Confidence 999842 221111 24678899999999999999999999999999998655555666554 6777888887776
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=1.4e-21 Score=247.82 Aligned_cols=345 Identities=22% Similarity=0.285 Sum_probs=178.3
Q ss_pred cccCCCCCcEEEccCCC------CCCchhhhhcCCC-CCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCC
Q 047985 217 SLGNITRLIHLDLSFNK------LSDELPTFIGTLG-SLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSS 289 (930)
Q Consensus 217 ~l~~l~~L~~L~Ls~n~------l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 289 (930)
+|.++++|+.|.+..+. +...+|..+..++ +|+.|.+.++.+. .+|..| ...+|+.|++.+|++. .++..
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~ 629 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDG 629 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccc
Confidence 34555555555554332 1122344444432 4666666666554 445554 3456666666666654 34555
Q ss_pred CCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhcccc
Q 047985 290 LGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKL 369 (930)
Q Consensus 290 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~ 369 (930)
+..+++|+.|+|+++.....+|. ++.+++|++|+|++|.....+|..+..+++|+.|++++|...+.+|.. .++++
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~---i~l~s 705 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG---INLKS 705 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc---CCCCC
Confidence 56666666666666554444443 555666666666666555566666666666666666665544444432 14455
Q ss_pred ccEEEccCCcccccccccCCCCccccceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEec
Q 047985 370 LYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNL 449 (930)
Q Consensus 370 L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~L 449 (930)
|+.|++++|.. .. .+|.. ..+|+.|++++|.+. .+|..+ .+++|..|.+
T Consensus 706 L~~L~Lsgc~~--L~----------------------~~p~~---~~nL~~L~L~~n~i~-~lP~~~---~l~~L~~L~l 754 (1153)
T PLN03210 706 LYRLNLSGCSR--LK----------------------SFPDI---STNISWLDLDETAIE-EFPSNL---RLENLDELIL 754 (1153)
T ss_pred CCEEeCCCCCC--cc----------------------ccccc---cCCcCeeecCCCccc-cccccc---cccccccccc
Confidence 55555555521 11 11111 123444444444443 233322 2344444444
Q ss_pred cCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceeecccccccCcCcccccccccCCceeecCCCccccccCc
Q 047985 450 SHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPD 529 (930)
Q Consensus 450 s~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~ 529 (930)
.++....+. +.+. .++......+++|+.|++++|...+.+|..++++++ |+.|++++|...+.+|.
T Consensus 755 ~~~~~~~l~------------~~~~-~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~-L~~L~Ls~C~~L~~LP~ 820 (1153)
T PLN03210 755 CEMKSEKLW------------ERVQ-PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHK-LEHLEIENCINLETLPT 820 (1153)
T ss_pred cccchhhcc------------cccc-ccchhhhhccccchheeCCCCCCccccChhhhCCCC-CCEEECCCCCCcCeeCC
Confidence 332211000 0000 111111112245666666666666566666666664 66666666554445555
Q ss_pred ccCCCCCccEEEccCccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCC
Q 047985 530 NLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFP 609 (930)
Q Consensus 530 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~ 609 (930)
.+ .+++|+.|++++|.....+|.. .++|+.|+|++|.++. +|.++..+++|++|+|++|+-...+|... ..++
T Consensus 821 ~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~~~--~~L~ 893 (1153)
T PLN03210 821 GI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSLNI--SKLK 893 (1153)
T ss_pred CC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCccCccc--cccc
Confidence 44 4566666666666544444432 2456667777776654 36666667777777776643333333332 4566
Q ss_pred CceEEECCCCc
Q 047985 610 KLRIIDLSKNR 620 (930)
Q Consensus 610 ~L~~LdLs~N~ 620 (930)
+|+.+++++|.
T Consensus 894 ~L~~L~l~~C~ 904 (1153)
T PLN03210 894 HLETVDFSDCG 904 (1153)
T ss_pred CCCeeecCCCc
Confidence 67777776664
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=2e-24 Score=222.61 Aligned_cols=416 Identities=21% Similarity=0.208 Sum_probs=264.6
Q ss_pred CCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccC-CCCCCccCcccccccccceeec
Q 047985 247 SLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLAS-NDFSGELPASFGNLRSLRTLDV 325 (930)
Q Consensus 247 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~L 325 (930)
.-.+++|..|+|+...|.+|..+++|+.|||++|+|+.+-|++|..+.+|..|-+.+ |+|+......|+++..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 567788888888877777888888888888888888888888888888877776666 7777666667788888888888
Q ss_pred ccccccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCC
Q 047985 326 YECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDL 405 (930)
Q Consensus 326 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l 405 (930)
.-|++.-.....|..+++|..|.+..|.+.. ++..
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~-i~~~-------------------------------------------- 182 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQS-ICKG-------------------------------------------- 182 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhh-hccc--------------------------------------------
Confidence 8888776666677777777777777666541 1110
Q ss_pred CCcchhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcc
Q 047985 406 TEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLS 485 (930)
Q Consensus 406 ~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~ 485 (930)
.+..+..++.+.+..|.+-..- +++.+... +. ..|..+...
T Consensus 183 -----tf~~l~~i~tlhlA~np~icdC-------nL~wla~~-~a-------------------------~~~ietsga- 223 (498)
T KOG4237|consen 183 -----TFQGLAAIKTLHLAQNPFICDC-------NLPWLADD-LA-------------------------MNPIETSGA- 223 (498)
T ss_pred -----cccchhccchHhhhcCcccccc-------ccchhhhH-Hh-------------------------hchhhcccc-
Confidence 1223334444444444421000 11111000 00 001111111
Q ss_pred cccceeecccccccCcCcccccccccCCceeecCCCccccccC-cccCCCCCccEEEccCccccccCCccccCCCCCcEe
Q 047985 486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIP-DNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFL 564 (930)
Q Consensus 486 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 564 (930)
....-..+.++++..+-+..|......+..--.+.+...+.-| ..|..+++|+.|+|++|+++++-+.+|.+...+++|
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL 303 (498)
T ss_pred eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence 2222233344444433333333221112222233444454555 468889999999999999999999999999999999
Q ss_pred cccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhccccee-c---c
Q 047985 565 DLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKV-V---N 640 (930)
Q Consensus 565 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~-l---~ 640 (930)
.|..|+|...-...|.++..|++|+|.+|+|+...|..+ ..+.+|.+|.|-.|++....-..++..|-.-+. . .
T Consensus 304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF--~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~ 381 (498)
T KOG4237|consen 304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF--QTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPR 381 (498)
T ss_pred hcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc--cccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCC
Confidence 999999999888889999999999999999999887666 678899999999999987776666665432221 0 1
Q ss_pred ccccccccccccCCCCCccceeeeEeeeccccccc-----ccccc---cc-cEEEcccccccccCchhcccccccceeec
Q 047985 641 ASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSY-----KKIPD---IL-TAVILSSNRFDGEIPTSISNLKGLQILSL 711 (930)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~L-~~L~Ls~N~l~g~ip~~l~~l~~L~~L~L 711 (930)
+....+..... +.+....-...+...+. ..-|+ -+ ++...|++.++ .+|..+- ..-.+|++
T Consensus 382 Cq~p~~~~~~~-------~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl 451 (498)
T KOG4237|consen 382 CQSPGFVRQIP-------ISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYL 451 (498)
T ss_pred CCCCchhcccc-------chhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhc
Confidence 11111111000 00000000000000000 00011 12 23345555554 5665553 35568999
Q ss_pred cCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCC
Q 047985 712 ADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDN 762 (930)
Q Consensus 712 s~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N 762 (930)
.+|.++ .+|.. .+.+| .+|||+|+++-.--..|.++++|.+|-+|||
T Consensus 452 ~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 452 DGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred ccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 999998 78887 67888 9999999999887888999999999999997
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.4e-21 Score=229.47 Aligned_cols=202 Identities=27% Similarity=0.328 Sum_probs=129.7
Q ss_pred cccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEec
Q 047985 486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLD 565 (930)
Q Consensus 486 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 565 (930)
++|+.|++++|.++. +|..+ ..|+.|++++|+++ .+|.. .++|+.|++++|++++ +|.. ..+|+.|+
T Consensus 262 ~sL~~L~Ls~N~L~~-Lp~lp----~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~ 328 (788)
T PRK15387 262 PGLLELSIFSNPLTH-LPALP----SGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLW 328 (788)
T ss_pred cccceeeccCCchhh-hhhch----hhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccc
Confidence 456677777776652 33321 13666777777766 34432 3557777777777764 3322 23466677
Q ss_pred ccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccccc
Q 047985 566 LGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELR 645 (930)
Q Consensus 566 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~ 645 (930)
+++|+++++ |.. ..+|+.|+|++|+|++.. . ..++|+.|++++|.++ .+|..
T Consensus 329 Ls~N~L~~L-P~l---p~~Lq~LdLS~N~Ls~LP-~-----lp~~L~~L~Ls~N~L~-~LP~l----------------- 380 (788)
T PRK15387 329 AYNNQLTSL-PTL---PSGLQELSVSDNQLASLP-T-----LPSELYKLWAYNNRLT-SLPAL----------------- 380 (788)
T ss_pred cccCccccc-ccc---ccccceEecCCCccCCCC-C-----CCcccceehhhccccc-cCccc-----------------
Confidence 777777653 321 246777777777777542 1 1245677777777776 24421
Q ss_pred cccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCccccccCccccc
Q 047985 646 YMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLG 725 (930)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~ 725 (930)
+..|+.|+|++|+|++ +|... +.|+.|++++|+|+ .+|...
T Consensus 381 ---------------------------------~~~L~~LdLs~N~Lt~-LP~l~---s~L~~LdLS~N~Ls-sIP~l~- 421 (788)
T PRK15387 381 ---------------------------------PSGLKELIVSGNRLTS-LPVLP---SELKELMVSGNRLT-SLPMLP- 421 (788)
T ss_pred ---------------------------------ccccceEEecCCcccC-CCCcc---cCCCEEEccCCcCC-CCCcch-
Confidence 2336778888888874 55433 56778888888887 466543
Q ss_pred ccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccccCCC
Q 047985 726 NLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQ 770 (930)
Q Consensus 726 ~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g~iP~ 770 (930)
.+|+.|+|++|+|+ .+|..+.+++.|+.|+|++|+|+|.+|.
T Consensus 422 --~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 422 --SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred --hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 45677888888887 6788888888888888888888887775
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=7e-21 Score=223.73 Aligned_cols=227 Identities=28% Similarity=0.377 Sum_probs=152.9
Q ss_pred CCceEEeccCccCcCCCC-CCCcceEEeccCcCCCCCchHHhhcccccceeecccccccCcCcccccccccCCceeecCC
Q 047985 442 QNFGHLNLSHNFLTGFDQ-HPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQH 520 (930)
Q Consensus 442 ~~L~~L~Ls~N~l~~~~~-~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~ 520 (930)
++|++|++++|+++.++. .++|+.|++++|.+. .+|.. +.+|+.|++++|+++. +|.. .+ +|+.|++++
T Consensus 242 ~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~-~Lp~l----p~~L~~L~Ls~N~Lt~-LP~~---p~-~L~~LdLS~ 311 (788)
T PRK15387 242 PELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLT-HLPAL----PSGLCKLWIFGNQLTS-LPVL---PP-GLQELSVSD 311 (788)
T ss_pred CCCcEEEecCCccCcccCcccccceeeccCCchh-hhhhc----hhhcCEEECcCCcccc-cccc---cc-ccceeECCC
Confidence 344444444444443322 234445555555444 33331 1457778888888773 4432 23 388888888
Q ss_pred CccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCC
Q 047985 521 NKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIR 600 (930)
Q Consensus 521 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 600 (930)
|++++ +|.. ...|+.|++++|++++ +|.. ..+|+.|+|++|+|+++ |.. .++|+.|++++|++++. |
T Consensus 312 N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~~L-P 378 (788)
T PRK15387 312 NQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLTSL-P 378 (788)
T ss_pred Ccccc-CCCC---cccccccccccCcccc-cccc---ccccceEecCCCccCCC-CCC---CcccceehhhccccccC-c
Confidence 88874 4432 2357778888888874 4432 24788888888888864 332 35677888888888863 3
Q ss_pred CCCccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccccccccccccCCCCCccceeeeEeeecccccccccccc
Q 047985 601 EPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPD 680 (930)
Q Consensus 601 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (930)
.. .++|+.|++++|++++ +|.. +.
T Consensus 379 ~l-----~~~L~~LdLs~N~Lt~-LP~l--------------------------------------------------~s 402 (788)
T PRK15387 379 AL-----PSGLKELIVSGNRLTS-LPVL--------------------------------------------------PS 402 (788)
T ss_pred cc-----ccccceEEecCCcccC-CCCc--------------------------------------------------cc
Confidence 21 3578999999998873 5521 23
Q ss_pred cccEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCC
Q 047985 681 ILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELT 752 (930)
Q Consensus 681 ~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~ 752 (930)
.|+.|++++|+|++ +|... ..|+.|+|++|+++ .+|..+.++++|+.|+|++|+|+|.+|..+..+.
T Consensus 403 ~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~ 469 (788)
T PRK15387 403 ELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 469 (788)
T ss_pred CCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHHh
Confidence 47889999999984 77543 46788999999998 7899999999999999999999999988875543
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=2.5e-19 Score=212.33 Aligned_cols=244 Identities=30% Similarity=0.482 Sum_probs=127.8
Q ss_pred ceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCC
Q 047985 396 RAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTG 475 (930)
Q Consensus 396 ~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g 475 (930)
..|++.++.++.+|..+. ++|+.|+|++|+++ .+|..+. .+|+.|++++|+++
T Consensus 181 ~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~----~nL~~L~Ls~N~Lt-------------------- 233 (754)
T PRK15370 181 TELRLKILGLTTIPACIP--EQITTLILDNNELK-SLPENLQ----GNIKTLYANSNQLT-------------------- 233 (754)
T ss_pred eEEEeCCCCcCcCCcccc--cCCcEEEecCCCCC-cCChhhc----cCCCEEECCCCccc--------------------
Confidence 345555555555554332 35666666666665 3443322 34555555554443
Q ss_pred CCchHHhhcccccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccc
Q 047985 476 EIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSL 555 (930)
Q Consensus 476 ~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 555 (930)
.+|..+. .+|+.|+|++|++. .+|..+.. +|+.|++++|+++ .+|..+. .+|+.|++++|++++ +|..+
T Consensus 234 sLP~~l~---~~L~~L~Ls~N~L~-~LP~~l~s---~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l 302 (754)
T PRK15370 234 SIPATLP---DTIQEMELSINRIT-ELPERLPS---ALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHL 302 (754)
T ss_pred cCChhhh---ccccEEECcCCccC-cCChhHhC---CCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccc
Confidence 3333322 34666666666665 44544331 3666666666666 3555443 356666666666663 33333
Q ss_pred cCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhccc
Q 047985 556 ANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNA 635 (930)
Q Consensus 556 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~ 635 (930)
. ++|+.|++++|+++.. |..+ .++|+.|++++|.+++. |..+ .++|+.|++++|+++ .+|...
T Consensus 303 p--~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~Lt~L-P~~l----~~sL~~L~Ls~N~L~-~LP~~l------ 365 (754)
T PRK15370 303 P--SGITHLNVQSNSLTAL-PETL--PPGLKTLEAGENALTSL-PASL----PPELQVLDVSKNQIT-VLPETL------ 365 (754)
T ss_pred h--hhHHHHHhcCCccccC-Cccc--cccceeccccCCccccC-Chhh----cCcccEEECCCCCCC-cCChhh------
Confidence 2 3566666666666643 3222 24566666666666542 3222 245666666666665 344210
Q ss_pred ceeccccccccccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCcc
Q 047985 636 MKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNS 715 (930)
Q Consensus 636 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 715 (930)
++.|+.|+|++|+|+ .+|..+. ..|+.|++++|+
T Consensus 366 -------------------------------------------p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~ 399 (754)
T PRK15370 366 -------------------------------------------PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNN 399 (754)
T ss_pred -------------------------------------------cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCC
Confidence 123566666666666 4454443 246666666666
Q ss_pred ccccCcccc----cccCCCCeeeCCCCcCc
Q 047985 716 LHGHIPSCL----GNLTDLESLDLSNNRFS 741 (930)
Q Consensus 716 l~g~ip~~l----~~L~~L~~LdLs~N~ls 741 (930)
|+ .+|..+ +.++.+..|+|.+|.++
T Consensus 400 L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 400 LV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred cc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 65 334332 33355666666666665
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=8.1e-18 Score=199.54 Aligned_cols=293 Identities=21% Similarity=0.290 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHhhcCCCCCccccccCCCccCCCCCCCCCCCCCCCCCCCcccc----------------eEecCCCCcEE
Q 047985 8 GDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCSWDG----------------VQCNENTGHVI 71 (930)
Q Consensus 8 ~~~~~aLl~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~~C~w~g----------------v~C~~~~~~v~ 71 (930)
++|.+.+++..+.+..|... ...-..|.. .+++|.-.. |.|.. +.|+
T Consensus 62 ~~~~~~~~~~~~~l~~p~~~-----------~~~~~~~~~----~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~--~~vt 124 (754)
T PRK15370 62 PEEIKSKFECLRMLAFPAYA-----------DNIQYSRGG----ADQYCILSENSQEILSIVFNTEGYTVEGGG--KSVT 124 (754)
T ss_pred HHHHHHHHHHHHHhcCCchh-----------hccccccCC----CCcccccCCcchhhheeeecCCceEEecCC--Cccc
Confidence 46888999999999766420 011234876 678886554 66743 4677
Q ss_pred EEEcCCCCCcccccCccc-------------------------------ccCCCCCCEEECCCCCCCCCCCchhccCCCC
Q 047985 72 KLDLSSSCLQGSINSSSS-------------------------------LFKLVHLEWLDLAFNDFDGSEIPPEIINLSS 120 (930)
Q Consensus 72 ~L~L~~~~l~g~~~~~~~-------------------------------l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~ 120 (930)
.+..-+............ -+-..+...|+++++.++. +|..+. ++
T Consensus 125 ~l~~~g~~~~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lts--LP~~Ip--~~ 200 (754)
T PRK15370 125 YTRVTESEQASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLTT--IPACIP--EQ 200 (754)
T ss_pred ccccccccccccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcCc--CCcccc--cC
Confidence 777665332211100000 0111345556666655553 444332 35
Q ss_pred CCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCC
Q 047985 121 LSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSL 200 (930)
Q Consensus 121 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 200 (930)
|++|+|++|.++ .+|..+. ++|++|++++|.+. .+|..+. .+|+.|++++|.+. .+|..+. .+|
T Consensus 201 L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt--------sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L 264 (754)
T PRK15370 201 ITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT--------SIPATLP--DTIQEMELSINRIT-ELPERLP--SAL 264 (754)
T ss_pred CcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc--------cCChhhh--ccccEEECcCCccC-cCChhHh--CCC
Confidence 666666666665 4454432 35666666665431 2222211 24555555555554 3343332 345
Q ss_pred CEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCC
Q 047985 201 TTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLN 280 (930)
Q Consensus 201 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 280 (930)
+.|++++|+++ .+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|.++. +|..+. ++|+.|++++|
T Consensus 265 ~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N 335 (754)
T PRK15370 265 QSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGEN 335 (754)
T ss_pred CEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCcccc--ccceeccccCC
Confidence 55555555555 2344332 345555555555543 222221 245555555555552 333221 34555555555
Q ss_pred CCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCC
Q 047985 281 RFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFS 355 (930)
Q Consensus 281 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 355 (930)
.+++ +|..+. ++|+.|++++|+++ .+|..+. ++|++|+|++|+++ .+|..+. ..|+.|++++|+++
T Consensus 336 ~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~ 401 (754)
T PRK15370 336 ALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV 401 (754)
T ss_pred cccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc
Confidence 5543 333332 45555555555554 2333331 34555555555554 2333322 23445555555554
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=7.2e-19 Score=194.06 Aligned_cols=279 Identities=23% Similarity=0.225 Sum_probs=146.0
Q ss_pred EECCCCCCCCCCCchhccCCCCCCEEEccCCCCCcc----CCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCC
Q 047985 99 LDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQ----IPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLT 174 (930)
Q Consensus 99 L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~ 174 (930)
|+|..+.+++...+..+..+.+|++|+++++.+++. ++..+...+.|++|+++++.+.. .......++..+.+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGLQSLLQGLTKGC 81 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHHHHHHHHHHhcC
Confidence 444444444333444444445555555555554321 33334444555555555553210 0000012334455556
Q ss_pred CCCEEEcCCccCCCCCchhccCCCC---CCEEEccCCCCCC----CCcccccCC-CCCcEEEccCCCCCCc----hhhhh
Q 047985 175 NLKELVLGDVTISSPIPHNLTYLSS---LTTLSLSGCDLRG----RIPSSLGNI-TRLIHLDLSFNKLSDE----LPTFI 242 (930)
Q Consensus 175 ~L~~L~L~~n~l~~~~~~~l~~l~~---L~~L~L~~n~l~~----~~p~~l~~l-~~L~~L~Ls~n~l~~~----~p~~l 242 (930)
+|++|++++|.+....+..+..+.+ |++|++++|.+++ .+...+..+ ++|+.|++++|.+++. ++..+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 6666666666665544444444333 6666666666652 122334455 6677777777766632 23345
Q ss_pred cCCCCCCEEEccCCCCCCC----cchhhcCCCCCCEEEccCCCCCCC----CCCCCCCCcCCcEEEccCCCCCCccCccc
Q 047985 243 GTLGSLKELDLLQNNLSGE----LPNSIGNLASLEQVDLSLNRFLGK----VPSSLGNLTQLHWLSLASNDFSGELPASF 314 (930)
Q Consensus 243 ~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 314 (930)
..+++|++|++++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++.....+
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 5566677777777776642 233445556777777777766533 22345566677777777777665222222
Q ss_pred c-----cccccceeecccccccC----CCcccccCCCCCCEEEccCCCCCCCCchh--HHhhcc-ccccEEEccCC
Q 047985 315 G-----NLRSLRTLDVYECKFSG----QIPSSLSNLTHLSFLDFSLNNFSGKMDLD--IFLVNH-KLLYHLFLSTN 378 (930)
Q Consensus 315 ~-----~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~--~~~~~~-~~L~~L~Ls~n 378 (930)
. ..+.|++|++++|.++. .+...+..+++|+.+++++|.++...... ...... +.|+.+++.+|
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 1 13577777777777652 22334555677777777777776432111 111122 45666666555
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=1.6e-18 Score=191.21 Aligned_cols=256 Identities=25% Similarity=0.274 Sum_probs=171.6
Q ss_pred EEEccCCCCC-ccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCC------CCchhcc
Q 047985 123 YLNLSSAAFS-GQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISS------PIPHNLT 195 (930)
Q Consensus 123 ~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~------~~~~~l~ 195 (930)
.|+|..+.++ +..+..+..+++|++|+++++.+.+.- ...++..+...++|++++++++.+.+ .++..+.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~---~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~ 78 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEA---AKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT 78 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHH---HHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHH
Confidence 4778888887 445566677888999999999543211 13456677788889999999888763 2345667
Q ss_pred CCCCCCEEEccCCCCCCCCcccccCCCC---CcEEEccCCCCCC----chhhhhcCC-CCCCEEEccCCCCCCC----cc
Q 047985 196 YLSSLTTLSLSGCDLRGRIPSSLGNITR---LIHLDLSFNKLSD----ELPTFIGTL-GSLKELDLLQNNLSGE----LP 263 (930)
Q Consensus 196 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~---L~~L~Ls~n~l~~----~~p~~l~~l-~~L~~L~L~~n~l~~~----~p 263 (930)
.+++|++|++++|.+.+..+..+..+.+ |++|++++|.+++ .+...+..+ ++|++|++++|.+++. ++
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~ 158 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA 158 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence 7889999999998887666655555544 8999998888874 233455666 7888888888888743 34
Q ss_pred hhhcCCCCCCEEEccCCCCCCC----CCCCCCCCcCCcEEEccCCCCCCc----cCcccccccccceeecccccccCCCc
Q 047985 264 NSIGNLASLEQVDLSLNRFLGK----VPSSLGNLTQLHWLSLASNDFSGE----LPASFGNLRSLRTLDVYECKFSGQIP 335 (930)
Q Consensus 264 ~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p 335 (930)
..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++...
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~ 238 (319)
T cd00116 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA 238 (319)
T ss_pred HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence 4566777888888888887742 233345556888888888887643 23345566778888888877765322
Q ss_pred cccc-----CCCCCCEEEccCCCCCC--CCchhHHhhccccccEEEccCCccc
Q 047985 336 SSLS-----NLTHLSFLDFSLNNFSG--KMDLDIFLVNHKLLYHLFLSTNRLS 381 (930)
Q Consensus 336 ~~l~-----~l~~L~~L~Ls~n~l~~--~~~~~~~~~~~~~L~~L~Ls~n~l~ 381 (930)
..+. ..+.|+.|++++|.++. ..+.......++.|+.+++++|.+.
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 2221 23677777777777762 2222222344456666666666544
No 21
>PLN03150 hypothetical protein; Provisional
Probab=99.59 E-value=1.8e-15 Score=179.36 Aligned_cols=117 Identities=38% Similarity=0.673 Sum_probs=105.7
Q ss_pred ccEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCC
Q 047985 682 LTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSD 761 (930)
Q Consensus 682 L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~ 761 (930)
++.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..++++++|++|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCC--CcCccCCcccCCCCCCCCCCCCCCCC
Q 047985 762 NHFTGPIPQGK--QFATFDKTSFDGNSGLCGRPLSSECE 798 (930)
Q Consensus 762 N~L~g~iP~~~--~~~~~~~~s~~gn~~Lcg~~l~~~c~ 798 (930)
|+++|.+|... .+.......+.||+++||.|....|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 99999999752 12233455789999999987656674
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=5e-17 Score=149.37 Aligned_cols=161 Identities=35% Similarity=0.606 Sum_probs=96.8
Q ss_pred CccEEEccCccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEE
Q 047985 536 ILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIID 615 (930)
Q Consensus 536 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~Ld 615 (930)
..+.|.|++|+++ .+|..+..+.+|+.|++++|+|... |..++.+++|+.|+++-|++.-. | ..+..+|.|++||
T Consensus 34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~l-p~~issl~klr~lnvgmnrl~~l-p--rgfgs~p~levld 108 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEEL-PTSISSLPKLRILNVGMNRLNIL-P--RGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhc-ChhhhhchhhhheecchhhhhcC-c--cccCCCchhhhhh
Confidence 3344444444444 2333445555555555555555443 44455555555555555555432 2 2235566677777
Q ss_pred CCCCcCcc-cCChHHHhhcccceeccccccccccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccc
Q 047985 616 LSKNRFTG-KLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDG 694 (930)
Q Consensus 616 Ls~N~l~g-~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g 694 (930)
|++|+++. .+|...|. +..|+.|+|+.|.|.
T Consensus 109 ltynnl~e~~lpgnff~-----------------------------------------------m~tlralyl~dndfe- 140 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFY-----------------------------------------------MTTLRALYLGDNDFE- 140 (264)
T ss_pred ccccccccccCCcchhH-----------------------------------------------HHHHHHHHhcCCCcc-
Confidence 77776653 22322110 123566777777776
Q ss_pred cCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCC
Q 047985 695 EIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVEL 751 (930)
Q Consensus 695 ~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L 751 (930)
.+|..++++++||.|.+..|.+. ..|..++.|++|+.|.+.+|+++ .+|+.++++
T Consensus 141 ~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 141 ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL 195 (264)
T ss_pred cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence 67777888888888888888877 67778888888888888888887 566666654
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=7e-17 Score=148.46 Aligned_cols=158 Identities=31% Similarity=0.510 Sum_probs=97.7
Q ss_pred cccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhh
Q 047985 89 SLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGN 168 (930)
Q Consensus 89 ~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~ 168 (930)
.+..+.+++.|.||+|.++. +|+.+..+.+|+.|++++|++. .+|.+++.+++|++|+++-|++
T Consensus 28 gLf~~s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl------------- 91 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL------------- 91 (264)
T ss_pred cccchhhhhhhhcccCceee--cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh-------------
Confidence 45566677777777777763 5677777777888888777777 6777777777777777776642
Q ss_pred hhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCC-CCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCC
Q 047985 169 LADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLR-GRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGS 247 (930)
Q Consensus 169 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 247 (930)
...|..|+.++.|+.|||.+|++. ..+|..|..++.|+.|.+++|.+. .+|..++++++
T Consensus 92 -------------------~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~ 151 (264)
T KOG0617|consen 92 -------------------NILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTN 151 (264)
T ss_pred -------------------hcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcc
Confidence 123445555555555555555554 235555555666666666666654 44455555555
Q ss_pred CCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCC
Q 047985 248 LKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFL 283 (930)
Q Consensus 248 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 283 (930)
|+.|.+..|.+. .+|..++.++.|+.|.+.+|+++
T Consensus 152 lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 152 LQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred eeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 555555555554 44555555555555555555544
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.51 E-value=9.7e-14 Score=164.69 Aligned_cols=125 Identities=34% Similarity=0.547 Sum_probs=96.0
Q ss_pred CCcHHHHHHHHHHHhhcCCCCCccccccCCCccCCCCCCCCCCCCCCCCCCC----cccceEecC--CCC--cEEEEEcC
Q 047985 5 LCHGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCC----SWDGVQCNE--NTG--HVIKLDLS 76 (930)
Q Consensus 5 ~c~~~~~~aLl~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~~C----~w~gv~C~~--~~~--~v~~L~L~ 76 (930)
.+.++|.+||++||+++..+. ..+|.. ..|| .|.||.|.. ..+ +|+.|+|+
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~----------------~~~W~g-----~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~ 426 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPL----------------RFGWNG-----DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLD 426 (623)
T ss_pred ccCchHHHHHHHHHHhcCCcc----------------cCCCCC-----CCCCCcccccccceeeccCCCCceEEEEEECC
Confidence 456789999999999986432 247964 2342 799999953 222 58889999
Q ss_pred CCCCcccccCcccccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCC
Q 047985 77 SSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHN 153 (930)
Q Consensus 77 ~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 153 (930)
++.+.|.++. .+..+++|++|+|++|.+.+. +|..++.+++|++|+|++|.++|.+|..++++++|++|+|++|
T Consensus 427 ~n~L~g~ip~--~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 427 NQGLRGFIPN--DISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500 (623)
T ss_pred CCCccccCCH--HHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence 9888888776 778888888888888888775 7777888888888888888888888877777777777777777
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.15 E-value=6e-12 Score=129.69 Aligned_cols=250 Identities=24% Similarity=0.289 Sum_probs=123.1
Q ss_pred cCCCCCCEEECCCCCCCCC---CCchhccCCCCCCEEEccCC---CCCccCCcc-------ccCCCCCcEEEccCCCCCC
Q 047985 91 FKLVHLEWLDLAFNDFDGS---EIPPEIINLSSLSYLNLSSA---AFSGQIPSE-------ILELSKLAYLDLSHNSYYD 157 (930)
Q Consensus 91 ~~l~~L~~L~Ls~n~~~~~---~ip~~l~~l~~L~~L~Ls~n---~l~~~~p~~-------l~~l~~L~~L~Ls~n~~~~ 157 (930)
..+..+++++||+|.|... .+...+.+.++|+..++|+- +....+|.. +-.+++|++||||+|.+..
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 3444455555555554321 12233444555555555542 111223322 3345567777777764322
Q ss_pred CccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCc
Q 047985 158 PVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDE 237 (930)
Q Consensus 158 ~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 237 (930)
... ..+...+..++.|++|+|.+|.+.-.--..++. .|.+|. .....+.-+.|+++....|++...
T Consensus 107 ~g~---~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 107 KGI---RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred cch---HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeeccccccc
Confidence 111 233445566666666666666554322222111 011100 001122334555555555555432
Q ss_pred ----hhhhhcCCCCCCEEEccCCCCCC----CcchhhcCCCCCCEEEccCCCCCCC----CCCCCCCCcCCcEEEccCCC
Q 047985 238 ----LPTFIGTLGSLKELDLLQNNLSG----ELPNSIGNLASLEQVDLSLNRFLGK----VPSSLGNLTQLHWLSLASND 305 (930)
Q Consensus 238 ----~p~~l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~ 305 (930)
+...|...+.|+++.+..|.|.. .+...|..+++|+.|||..|-++.. +...+..+++|+.|++++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 22344455566666666665532 1233455666666666666665432 22345556667777777666
Q ss_pred CCCccCccc-----ccccccceeecccccccCC----CcccccCCCCCCEEEccCCCC
Q 047985 306 FSGELPASF-----GNLRSLRTLDVYECKFSGQ----IPSSLSNLTHLSFLDFSLNNF 354 (930)
Q Consensus 306 l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l 354 (930)
+...-...+ ...++|++|.+.+|.++.. +...+...+.|..|+|++|.+
T Consensus 253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 654322211 1246677777777766532 222344567777777777777
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.14 E-value=3.4e-12 Score=138.73 Aligned_cols=128 Identities=34% Similarity=0.512 Sum_probs=102.8
Q ss_pred ceEEeccCcCCCCCchHHhhcccccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEcc
Q 047985 464 VNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLS 543 (930)
Q Consensus 464 ~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 543 (930)
...+++.|++. ++|..++.+ ..|+.+.+.+|.+. .+|.++.++.. |+++||+.|+++ .+|..++.++ |+.|.++
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f-~~Le~liLy~n~~r-~ip~~i~~L~~-lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAF-VSLESLILYHNCIR-TIPEAICNLEA-LTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred hhhhccccccc-cCchHHHHH-HHHHHHHHHhccce-ecchhhhhhhH-HHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence 44455556665 788888877 77999999999987 78888888886 999999999998 7787777765 8899999
Q ss_pred CccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccC
Q 047985 544 DNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLI 599 (930)
Q Consensus 544 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 599 (930)
+|+++ .+|..++....|..||.+.|.+... |..++++.+|+.|+++.|++....
T Consensus 152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~sl-psql~~l~slr~l~vrRn~l~~lp 205 (722)
T KOG0532|consen 152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQSL-PSQLGYLTSLRDLNVRRNHLEDLP 205 (722)
T ss_pred cCccc-cCCcccccchhHHHhhhhhhhhhhc-hHHhhhHHHHHHHHHhhhhhhhCC
Confidence 99988 6777888888899999999988765 667777788888888877776553
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.11 E-value=3.7e-12 Score=138.45 Aligned_cols=171 Identities=28% Similarity=0.406 Sum_probs=96.8
Q ss_pred cceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCC
Q 047985 395 FRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLT 474 (930)
Q Consensus 395 L~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~ 474 (930)
-...+++.|.+.++|.....+..|+.+.|..|.+. .+|..+. .+..|.+|+|+.|+++
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~--~L~~lt~l~ls~NqlS------------------- 134 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAIC--NLEALTFLDLSSNQLS------------------- 134 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhh--hhhHHHHhhhccchhh-------------------
Confidence 34556666666677766666667777777777765 4555554 5666666777666665
Q ss_pred CCCchHHhhcccccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCcc
Q 047985 475 GEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRS 554 (930)
Q Consensus 475 g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 554 (930)
.+|..+|.+ + |+.|-+++|+++ .+|..++.... |..||.+.|.+. .+|..++++.+|+.|.+..|++. .+|..
T Consensus 135 -~lp~~lC~l-p-Lkvli~sNNkl~-~lp~~ig~~~t-l~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~E 207 (722)
T KOG0532|consen 135 -HLPDGLCDL-P-LKVLIVSNNKLT-SLPEEIGLLPT-LAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEE 207 (722)
T ss_pred -cCChhhhcC-c-ceeEEEecCccc-cCCcccccchh-HHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHH
Confidence 445555554 2 555555555554 44545553332 555555555555 45555555555555555555555 23444
Q ss_pred ccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCccc
Q 047985 555 LANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFH 596 (930)
Q Consensus 555 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 596 (930)
+. .-.|..||+|.|+++.+ |..|..+..|++|-|.+|++.
T Consensus 208 l~-~LpLi~lDfScNkis~i-Pv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 208 LC-SLPLIRLDFSCNKISYL-PVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred Hh-CCceeeeecccCceeec-chhhhhhhhheeeeeccCCCC
Confidence 44 33455555555555543 555555555555555555554
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.04 E-value=3.2e-10 Score=128.91 Aligned_cols=200 Identities=38% Similarity=0.511 Sum_probs=142.4
Q ss_pred EEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCC-CCcEEEccCCCCCCCccccCCchhhhhhCCCCC
Q 047985 98 WLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELS-KLAYLDLSHNSYYDPVELRKPSLGNLADKLTNL 176 (930)
Q Consensus 98 ~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L 176 (930)
.++++.+.+... ...+..++.++.|++.+|.++ .+|...+.+. +|+.|++++|.+ ..++..+..+++|
T Consensus 97 ~l~~~~~~~~~~--~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i--------~~l~~~~~~l~~L 165 (394)
T COG4886 97 SLDLNLNRLRSN--ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKI--------ESLPSPLRNLPNL 165 (394)
T ss_pred eeeccccccccC--chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccch--------hhhhhhhhccccc
Confidence 567777766322 234556677888888888877 6666666664 788888888754 3444567778888
Q ss_pred CEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCC
Q 047985 177 KELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQN 256 (930)
Q Consensus 177 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 256 (930)
+.|++++|+++.. |...+..+.|+.|++++|++. .+|........|++|.+++|.+. ..+..+.++.++..+.+.+|
T Consensus 166 ~~L~l~~N~l~~l-~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n 242 (394)
T COG4886 166 KNLDLSFNDLSDL-PKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNN 242 (394)
T ss_pred cccccCCchhhhh-hhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCc
Confidence 8888888877654 333336678888888888887 45655556666888888888533 34456777788888888888
Q ss_pred CCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCccc
Q 047985 257 NLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASF 314 (930)
Q Consensus 257 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 314 (930)
++. .++..++.++++++|++++|.++...+ ++.+.+|+.|++++|.+....|...
T Consensus 243 ~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 243 KLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred eee-eccchhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence 776 346677888888899998888875433 8888888999998888886655443
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.03 E-value=5.9e-11 Score=122.46 Aligned_cols=254 Identities=22% Similarity=0.287 Sum_probs=160.4
Q ss_pred hhccCCCCCCEEEccCCCCCcc----CCccccCCCCCcEEEccCCCCCCCccccCCchh-------hhhhCCCCCCEEEc
Q 047985 113 PEIINLSSLSYLNLSSAAFSGQ----IPSEILELSKLAYLDLSHNSYYDPVELRKPSLG-------NLADKLTNLKELVL 181 (930)
Q Consensus 113 ~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~-------~~l~~l~~L~~L~L 181 (930)
+.+.....+++++||+|.|.-. +...+.+.++|+..++|+-.. .... ..+| +.+..+++|++|+|
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ft-GR~~---~Ei~e~L~~l~~aL~~~~~L~~ldL 99 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFT-GRLK---DEIPEALKMLSKALLGCPKLQKLDL 99 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhc-CCcH---HHHHHHHHHHHHHHhcCCceeEeec
Confidence 3456677888888888888632 334456667777777776411 1110 1122 23344556666666
Q ss_pred CCccCCCCCchhc----cCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCC
Q 047985 182 GDVTISSPIPHNL----TYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNN 257 (930)
Q Consensus 182 ~~n~l~~~~~~~l----~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 257 (930)
|+|.+....+..| ..+..|++|.|.+|.+.-.--..++. .|..|. .....+.-+.|+++..++|+
T Consensus 100 SDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 100 SDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred cccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeeccc
Confidence 6665554443332 33445555555555443111111110 111111 11223445789999999999
Q ss_pred CCCC----cchhhcCCCCCCEEEccCCCCCCC----CCCCCCCCcCCcEEEccCCCCCCc----cCcccccccccceeec
Q 047985 258 LSGE----LPNSIGNLASLEQVDLSLNRFLGK----VPSSLGNLTQLHWLSLASNDFSGE----LPASFGNLRSLRTLDV 325 (930)
Q Consensus 258 l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L 325 (930)
+... +...|...+.|+.+.++.|.+... +...|..+++|+.|||..|.++.. +...+..+++|+.|++
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 8642 345677889999999999987532 224578899999999999999753 3445677889999999
Q ss_pred ccccccCCCcccc-----cCCCCCCEEEccCCCCCCCCc--hhHHhhccccccEEEccCCccc
Q 047985 326 YECKFSGQIPSSL-----SNLTHLSFLDFSLNNFSGKMD--LDIFLVNHKLLYHLFLSTNRLS 381 (930)
Q Consensus 326 ~~n~l~~~~p~~l-----~~l~~L~~L~Ls~n~l~~~~~--~~~~~~~~~~L~~L~Ls~n~l~ 381 (930)
++|.+.......+ ...++|+.|.+.+|.++..-. ........+.|..|+|++|++.
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 9999875443333 347899999999999874322 2223356899999999999874
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=8.2e-11 Score=124.55 Aligned_cols=116 Identities=28% Similarity=0.278 Sum_probs=67.2
Q ss_pred ccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCC--CcchhhhcC
Q 047985 338 LSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLT--EIPKFLKNQ 415 (930)
Q Consensus 338 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~--~ip~~l~~~ 415 (930)
...|++++.|||+.|-+....+...+...+++|+.|+|+.|++..-...........++.|.+++|.++ .+...+..+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 344555556666655555544444455566666666666665544333333335677888888888888 566666778
Q ss_pred CCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCc
Q 047985 416 HHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLT 455 (930)
Q Consensus 416 ~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~ 455 (930)
|+|+.|+|..|.. ..........+..|+.|+|++|++-
T Consensus 222 Psl~~L~L~~N~~--~~~~~~~~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 222 PSLEVLYLEANEI--ILIKATSTKILQTLQELDLSNNNLI 259 (505)
T ss_pred CcHHHhhhhcccc--cceecchhhhhhHHhhccccCCccc
Confidence 8888888888852 1111111112344555555555444
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.99 E-value=8.5e-10 Score=125.45 Aligned_cols=201 Identities=40% Similarity=0.543 Sum_probs=162.5
Q ss_pred CEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCC-CCCEEEcCCccCCCCCchhccCCCCC
Q 047985 122 SYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLT-NLKELVLGDVTISSPIPHNLTYLSSL 200 (930)
Q Consensus 122 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L 200 (930)
..|+++.+.+... +..+..++.++.|++..|.+ ..++.....++ +|+.|++++|.+... |..+..+++|
T Consensus 96 ~~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i--------~~i~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L 165 (394)
T COG4886 96 PSLDLNLNRLRSN-ISELLELTNLTSLDLDNNNI--------TDIPPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNL 165 (394)
T ss_pred ceeeccccccccC-chhhhcccceeEEecCCccc--------ccCccccccchhhcccccccccchhhh-hhhhhccccc
Confidence 3688888887533 33466778999999999964 45666666774 999999999998763 4668899999
Q ss_pred CEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCC
Q 047985 201 TTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLN 280 (930)
Q Consensus 201 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 280 (930)
+.|++++|++. .+|...+..+.|+.|++++|++.. +|........|++|.+++|.+. ..+..+.++.++..+.+.+|
T Consensus 166 ~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n 242 (394)
T COG4886 166 KNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNN 242 (394)
T ss_pred cccccCCchhh-hhhhhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCc
Confidence 99999999998 456656688999999999999984 4555556677999999999654 56677889999999999999
Q ss_pred CCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccc
Q 047985 281 RFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSL 338 (930)
Q Consensus 281 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 338 (930)
++.. ++..++.+++++.|++++|.++...+ ++.+.+++.|++++|.+....|...
T Consensus 243 ~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 243 KLED-LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred eeee-ccchhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence 8764 36788999999999999999985433 8889999999999999987766543
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.4e-10 Score=122.80 Aligned_cols=211 Identities=25% Similarity=0.266 Sum_probs=96.4
Q ss_pred cCCCCCCEEEccCCCCCccCC--ccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchh
Q 047985 116 INLSSLSYLNLSSAAFSGQIP--SEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHN 193 (930)
Q Consensus 116 ~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~ 193 (930)
.++++|+...|.++... ..+ .....|++++.||||+|-+.. ...+......+++|+.|+++.|.+.......
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~n-----w~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~ 191 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHN-----WFPVLKIAEQLPSLENLNLSSNRLSNFISSN 191 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHh-----HHHHHHHHHhcccchhcccccccccCCcccc
Confidence 45566666666666554 222 234556666666666663211 1123344455666666666666544322211
Q ss_pred c-cCCCCCCEEEccCCCCCCC-CcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCC
Q 047985 194 L-TYLSSLTTLSLSGCDLRGR-IPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLAS 271 (930)
Q Consensus 194 l-~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 271 (930)
. ..+++|+.|.|+.|.++.. +-..+..+++|+.|+|.. |............+..
T Consensus 192 ~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~------------------------N~~~~~~~~~~~i~~~ 247 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEA------------------------NEIILIKATSTKILQT 247 (505)
T ss_pred chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhc------------------------ccccceecchhhhhhH
Confidence 1 1234555555555554411 111123344444444444 4322121222233344
Q ss_pred CCEEEccCCCCCCCC-CCCCCCCcCCcEEEccCCCCCCc-cCcc-----cccccccceeecccccccCC-CcccccCCCC
Q 047985 272 LEQVDLSLNRFLGKV-PSSLGNLTQLHWLSLASNDFSGE-LPAS-----FGNLRSLRTLDVYECKFSGQ-IPSSLSNLTH 343 (930)
Q Consensus 272 L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~-~p~~-----l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~ 343 (930)
|+.|||++|++.... -...+.++.|..|+++.+.+... .|+. ...+++|++|++..|++... .-..+..+++
T Consensus 248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~n 327 (505)
T KOG3207|consen 248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLEN 327 (505)
T ss_pred HhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccch
Confidence 555555555443211 02234445555555555544431 1221 23456666666666665321 0112344556
Q ss_pred CCEEEccCCCCCC
Q 047985 344 LSFLDFSLNNFSG 356 (930)
Q Consensus 344 L~~L~Ls~n~l~~ 356 (930)
|+.|.+..|.++.
T Consensus 328 lk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 328 LKHLRITLNYLNK 340 (505)
T ss_pred hhhhhcccccccc
Confidence 6666666666653
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.80 E-value=9.6e-10 Score=110.60 Aligned_cols=134 Identities=19% Similarity=0.159 Sum_probs=74.5
Q ss_pred CCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEE
Q 047985 269 LASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLD 348 (930)
Q Consensus 269 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 348 (930)
...|+++||++|.++ .+.++..-.+.++.|++|+|.+... ..+..+++|+.|||++|.++. +..+-..+.++++|.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcCEeeee
Confidence 345566666666554 3444455556666666666665522 225555666666666665552 222333455666666
Q ss_pred ccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcch
Q 047985 349 FSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPK 410 (930)
Q Consensus 349 Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~ 410 (930)
|+.|.+...- .+.++-+|..||+++|+|............+.|+.+.+.+|.+..+++
T Consensus 359 La~N~iE~LS----GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 359 LAQNKIETLS----GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhhhhHhhhh----hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 6666543211 114455566666666666655555555556667777777777765554
No 34
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.79 E-value=6.3e-09 Score=76.14 Aligned_cols=43 Identities=44% Similarity=0.838 Sum_probs=29.8
Q ss_pred cHHHHHHHHHHHhhcCCCCCccccccCCCccCCCCCCCCCCCCCCCCCCCcccceEec
Q 047985 7 HGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCSWDGVQCN 64 (930)
Q Consensus 7 ~~~~~~aLl~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~~C~w~gv~C~ 64 (930)
.++|++||++||+++..++. ..+.+|+... ..+||+|.||+|+
T Consensus 1 ~~~d~~aLl~~k~~l~~~~~-------------~~l~~W~~~~--~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 1 PNQDRQALLAFKKSLNNDPS-------------GVLSSWNPSS--DSDPCSWSGVTCD 43 (43)
T ss_dssp -HHHHHHHHHHHHCTT-SC--------------CCCTT--TT----S-CCCSTTEEE-
T ss_pred CcHHHHHHHHHHHhcccccC-------------cccccCCCcC--CCCCeeeccEEeC
Confidence 36899999999999996543 2799998731 2799999999995
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.79 E-value=1.2e-09 Score=109.96 Aligned_cols=133 Identities=26% Similarity=0.283 Sum_probs=78.8
Q ss_pred CCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEE
Q 047985 221 ITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLS 300 (930)
Q Consensus 221 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 300 (930)
-+.|+.+|||+|.|+ .+.++..-.+.++.|++++|.+... ..++.+++|+.|||++|.++ .+..+=.++.+.+.|.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 345566666666554 3334445556666666666666522 23566666666666666655 2334444556666777
Q ss_pred ccCCCCCCccCcccccccccceeecccccccCC-CcccccCCCCCCEEEccCCCCCCCCc
Q 047985 301 LASNDFSGELPASFGNLRSLRTLDVYECKFSGQ-IPSSLSNLTHLSFLDFSLNNFSGKMD 359 (930)
Q Consensus 301 Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~~ 359 (930)
|+.|.+.. -+.++.+-+|..||+++|++... --..+++++.|+.+.|.+|++.+.+.
T Consensus 359 La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 359 LAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 77766642 23455566677777777766521 12356777777777777777776554
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.78 E-value=4.1e-09 Score=102.69 Aligned_cols=104 Identities=32% Similarity=0.418 Sum_probs=23.8
Q ss_pred CCCCEEEccCCCCCCCCccccc-CCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhh-cCCCCCCEE
Q 047985 198 SSLTTLSLSGCDLRGRIPSSLG-NITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSI-GNLASLEQV 275 (930)
Q Consensus 198 ~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L 275 (930)
.++++|+|.+|.|+.. +.++ .+.+|+.|++++|.++.. +.+..+++|++|++++|.++. +++.+ ..+++|++|
T Consensus 19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EE
T ss_pred cccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEE
Confidence 4455555555555421 2333 345555666666655533 234445556666666665553 22222 245555555
Q ss_pred EccCCCCCCCCC-CCCCCCcCCcEEEccCCCC
Q 047985 276 DLSLNRFLGKVP-SSLGNLTQLHWLSLASNDF 306 (930)
Q Consensus 276 ~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l 306 (930)
++++|++...-. ..+..+++|+.|+|.+|.+
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 555555543211 2233344444444444444
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.76 E-value=6.9e-09 Score=101.12 Aligned_cols=103 Identities=28% Similarity=0.262 Sum_probs=28.4
Q ss_pred CCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCccc-ccccccceeecccccccCCC-cccccCCCCCCE
Q 047985 269 LASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASF-GNLRSLRTLDVYECKFSGQI-PSSLSNLTHLSF 346 (930)
Q Consensus 269 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~ 346 (930)
+.+|+.|+|++|.++.. +.+..++.|++|++++|+++.. ...+ ..+++|++|++++|++...- -..+..+++|+.
T Consensus 41 l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp -TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred hcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence 34444444444444422 1244444455555555544422 1112 23445555555555443211 123444555555
Q ss_pred EEccCCCCCCCCch-hHHhhccccccEEE
Q 047985 347 LDFSLNNFSGKMDL-DIFLVNHKLLYHLF 374 (930)
Q Consensus 347 L~Ls~n~l~~~~~~-~~~~~~~~~L~~L~ 374 (930)
|++.+|+++..... ......+|+|+.||
T Consensus 118 L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 118 LSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred eeccCCcccchhhHHHHHHHHcChhheeC
Confidence 55555555433221 12224455555554
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.74 E-value=1.2e-08 Score=123.86 Aligned_cols=248 Identities=24% Similarity=0.217 Sum_probs=116.8
Q ss_pred CCCEEECCCCC--CCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhC
Q 047985 95 HLEWLDLAFND--FDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADK 172 (930)
Q Consensus 95 ~L~~L~Ls~n~--~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~ 172 (930)
.|++|-+..|. +... .+..|..++.|++|||++|.=-+.+|..++.|-+||||++++..+ ..+|..+.+
T Consensus 546 ~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I--------~~LP~~l~~ 616 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI--------SHLPSGLGN 616 (889)
T ss_pred ccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc--------cccchHHHH
Confidence 45555555554 2211 223355566666666666554456666666666666666666532 355666666
Q ss_pred CCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCC--CCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCC-
Q 047985 173 LTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLR--GRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLK- 249 (930)
Q Consensus 173 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~- 249 (930)
++.|.+|++..+.....+|.....+++|++|.+...... ...-..+.++.+|+.+....... .+-..+..+..|.
T Consensus 617 Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~ 694 (889)
T KOG4658|consen 617 LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRS 694 (889)
T ss_pred HHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHH
Confidence 666666666655544444555555666666666554321 11222334444444444432221 1111112222222
Q ss_pred ---EEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCC------CcCCcEEEccCCCCCCccCccccccccc
Q 047985 250 ---ELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGN------LTQLHWLSLASNDFSGELPASFGNLRSL 320 (930)
Q Consensus 250 ---~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~------l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 320 (930)
.+.+..+... ..+..+..+.+|+.|.+.++.+.......... ++++..+...++... ..+.+..-.++|
T Consensus 695 ~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L 772 (889)
T KOG4658|consen 695 LLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHL 772 (889)
T ss_pred HhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcc
Confidence 2222222222 33445666677777777776654322222111 112222222222111 122233334667
Q ss_pred ceeecccccccCCCcccccCCCCCCEEEccCCCCC
Q 047985 321 RTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFS 355 (930)
Q Consensus 321 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 355 (930)
+.|.+..+.....+.+....+..++.+.+..+.+.
T Consensus 773 ~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 773 TSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE 807 (889)
T ss_pred cEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence 77777766665555444555555554444444443
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.72 E-value=7.9e-09 Score=82.68 Aligned_cols=60 Identities=35% Similarity=0.602 Sum_probs=38.3
Q ss_pred ccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcc
Q 047985 705 GLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHF 764 (930)
Q Consensus 705 ~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L 764 (930)
+|+.|++++|+++...+..|.++++|++||+++|+++...|..|..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 456666666666655555666666666666666666655555666666666666666654
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.64 E-value=2e-08 Score=80.36 Aligned_cols=60 Identities=40% Similarity=0.554 Sum_probs=56.3
Q ss_pred cccEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcC
Q 047985 681 ILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRF 740 (930)
Q Consensus 681 ~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l 740 (930)
.|+.|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 589999999999977778999999999999999999988889999999999999999986
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.59 E-value=9.5e-09 Score=117.04 Aligned_cols=221 Identities=27% Similarity=0.307 Sum_probs=130.0
Q ss_pred cccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEec
Q 047985 486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLD 565 (930)
Q Consensus 486 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 565 (930)
.+|+.|++.+|.|..... .+..+.. |++|++++|.|+... .+..++.|+.|++++|.|+.. ..+..+..|+.++
T Consensus 95 ~~l~~l~l~~n~i~~i~~-~l~~~~~-L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIEN-LLSSLVN-LQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLD 168 (414)
T ss_pred cceeeeeccccchhhccc-chhhhhc-chheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhhccc
Confidence 455666666666553322 1334443 666666666665432 234445577777777777643 2445577777777
Q ss_pred ccCccccccCc-ccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceecccccc
Q 047985 566 LGDNQIRDIFP-SWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASEL 644 (930)
Q Consensus 566 Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~ 644 (930)
+++|++..+-+ . ...+.+++.+.+.+|.+...-.. ..+..+..+++..|.++-.-+.. .
T Consensus 169 l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~----~~~~~l~~~~l~~n~i~~~~~l~------~--------- 228 (414)
T KOG0531|consen 169 LSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGL----DLLKKLVLLSLLDNKISKLEGLN------E--------- 228 (414)
T ss_pred CCcchhhhhhhhh-hhhccchHHHhccCCchhcccch----HHHHHHHHhhcccccceeccCcc------c---------
Confidence 77777777654 2 46677777788888777654221 22344555567777665211100 0
Q ss_pred ccccccccCCCCCccceeeeEeeecccccccccccc--cccEEEcccccccccCchhcccccccceeeccCccccccCcc
Q 047985 645 RYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPD--ILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPS 722 (930)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~ 722 (930)
.. .++.+++++|++. .++..+..+..+..|+++.|++... .
T Consensus 229 ----------------------------------~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~ 271 (414)
T KOG0531|consen 229 ----------------------------------LVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--E 271 (414)
T ss_pred ----------------------------------chhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--c
Confidence 00 2567777777776 4445566677778888888877643 2
Q ss_pred cccccCCCCeeeCCCCcCccc---CCcc-ccCCCCCCeeecCCCcccccCC
Q 047985 723 CLGNLTDLESLDLSNNRFSGQ---IPQQ-LVELTFLEFFNVSDNHFTGPIP 769 (930)
Q Consensus 723 ~l~~L~~L~~LdLs~N~lsg~---ip~~-l~~L~~L~~L~ls~N~L~g~iP 769 (930)
.+.....+..+.++.|.+... .... ....+.+..+.+.+|+.....+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 272 GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred cccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 245556677777777776522 1111 4556677777777777766554
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.58 E-value=6.2e-08 Score=117.79 Aligned_cols=104 Identities=36% Similarity=0.450 Sum_probs=47.7
Q ss_pred CCcEEEccCCC--CCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEE
Q 047985 223 RLIHLDLSFNK--LSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLS 300 (930)
Q Consensus 223 ~L~~L~Ls~n~--l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 300 (930)
+|++|-+..|. +.....++|..++.|++|||++|.--+.+|..++.+-+|++|++++..+. .+|..+.++..|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 44444444443 23233333444555555555544443444555555555555555554443 4444455555555555
Q ss_pred ccCCCCCCccCcccccccccceeeccc
Q 047985 301 LASNDFSGELPASFGNLRSLRTLDVYE 327 (930)
Q Consensus 301 Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 327 (930)
+..+.-...+|.....+++|++|.+..
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred cccccccccccchhhhcccccEEEeec
Confidence 544443333333333344444444433
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.58 E-value=6e-09 Score=118.69 Aligned_cols=61 Identities=31% Similarity=0.317 Sum_probs=35.8
Q ss_pred CCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCC
Q 047985 92 KLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSY 155 (930)
Q Consensus 92 ~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~ 155 (930)
.+..++.+++..|.+.. +-..++.+++|++|++.+|.+.. +...+..+++|++|++++|.+
T Consensus 70 ~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I 130 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKI 130 (414)
T ss_pred HhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccc
Confidence 45566666666666653 12335666677777777776662 332255566666666666643
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=8.2e-09 Score=104.15 Aligned_cols=182 Identities=24% Similarity=0.241 Sum_probs=103.4
Q ss_pred CCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCC
Q 047985 95 HLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLT 174 (930)
Q Consensus 95 ~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~ 174 (930)
.|++||||...++...+..-+..+.+|+.|.|.++.+.+.+...+++-.+|+.|+++.+. .+ ....+...+.+++
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s---G~--t~n~~~ll~~scs 260 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS---GF--TENALQLLLSSCS 260 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc---cc--chhHHHHHHHhhh
Confidence 478888888777655455557778888888888888888877788888888888888773 11 1233445567777
Q ss_pred CCCEEEcCCccCCCCCch-hccCC-CCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEE
Q 047985 175 NLKELVLGDVTISSPIPH-NLTYL-SSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELD 252 (930)
Q Consensus 175 ~L~~L~L~~n~l~~~~~~-~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 252 (930)
.|.+|+++.|.+....-. .+.+. ++|+.|+|+++.-. -....+..-...+++|.+||
T Consensus 261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn---------------------l~~sh~~tL~~rcp~l~~LD 319 (419)
T KOG2120|consen 261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN---------------------LQKSHLSTLVRRCPNLVHLD 319 (419)
T ss_pred hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh---------------------hhhhHHHHHHHhCCceeeec
Confidence 777777777765543321 11111 45566666655311 00011112223445555555
Q ss_pred ccCCC-CCCCcchhhcCCCCCCEEEccCCCCCCCCCCC---CCCCcCCcEEEccCC
Q 047985 253 LLQNN-LSGELPNSIGNLASLEQVDLSLNRFLGKVPSS---LGNLTQLHWLSLASN 304 (930)
Q Consensus 253 L~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~---l~~l~~L~~L~Ls~N 304 (930)
|++|. ++...-..|.+++.|++|.++.|. +.+|.. +...+.|.+|++.++
T Consensus 320 LSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 320 LSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred cccccccCchHHHHHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEeccc
Confidence 55442 222223344555566666665553 234432 344566666666554
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.30 E-value=1.3e-08 Score=113.98 Aligned_cols=127 Identities=27% Similarity=0.296 Sum_probs=67.8
Q ss_pred CCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecc
Q 047985 247 SLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVY 326 (930)
Q Consensus 247 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 326 (930)
.|...+.+.|.+. .+..++.-++.|+.|+|++|+++... .+..+++|++|||+.|.+....--....+. |+.|.++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 4555555666555 44455555566666666666665432 455566666666666666522111222233 6666666
Q ss_pred cccccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcc
Q 047985 327 ECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRL 380 (930)
Q Consensus 327 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l 380 (930)
+|.++.. ..+.++.+|+.||+++|-+.+--....+ ..+..|+.|+|.+|++
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pL-wsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPL-WSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHH-HHHHHHHHHhhcCCcc
Confidence 6655532 2345566666666666655543322222 4455666666666654
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.21 E-value=4.8e-07 Score=90.46 Aligned_cols=38 Identities=18% Similarity=0.008 Sum_probs=17.6
Q ss_pred cccceeecccccccCCCccc-------ccCCCCCCEEEccCCCCC
Q 047985 318 RSLRTLDVYECKFSGQIPSS-------LSNLTHLSFLDFSLNNFS 355 (930)
Q Consensus 318 ~~L~~L~L~~n~l~~~~p~~-------l~~l~~L~~L~Ls~n~l~ 355 (930)
++|..|-..+|...+.+... -.+++-|..|.+.+|.+.
T Consensus 272 p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 272 PNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred CCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 45555555555444322111 123455555555556554
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=1e-06 Score=89.33 Aligned_cols=191 Identities=17% Similarity=0.146 Sum_probs=89.9
Q ss_pred CCCCcEEEccCCCCCCc--hhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCC-CCCCCCCCcCCc
Q 047985 221 ITRLIHLDLSFNKLSDE--LPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGK-VPSSLGNLTQLH 297 (930)
Q Consensus 221 l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~ 297 (930)
.+.++.+||.+|.|+.- +-..+.+++.|++|+++.|.+...|-..-....+|+.|-|.+..+.-. ....+..++.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 45556666666665532 333345556666666666655533322112344555555555444321 112334445555
Q ss_pred EEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccC
Q 047985 298 WLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLST 377 (930)
Q Consensus 298 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 377 (930)
.|.+|.|.+. .+.+..+..... -+.+.+|++-.|...-...........+++..+.+-.
T Consensus 150 elHmS~N~~r--------------q~n~Dd~c~e~~-------s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e 208 (418)
T KOG2982|consen 150 ELHMSDNSLR--------------QLNLDDNCIEDW-------STEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCE 208 (418)
T ss_pred hhhhccchhh--------------hhcccccccccc-------chhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeec
Confidence 5555544321 111111111110 1123333332222110000000112345555566666
Q ss_pred CcccccccccCCCCccccceeeeccCCCCCc--chhhhcCCCcCEEeCCCCCCcCCC
Q 047985 378 NRLSLLTKATSNTTSHRFRAVSLCSCDLTEI--PKFLKNQHHLELLDLASNKINGKV 432 (930)
Q Consensus 378 n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~i--p~~l~~~~~L~~L~Ls~N~l~~~~ 432 (930)
+++............+.+..|.+..+++... .+.+..++.|..|.++++.+.+.+
T Consensus 209 ~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 209 GPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred CcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 6555544444444555666777777777733 346777888888888888776443
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.18 E-value=9.2e-08 Score=107.36 Aligned_cols=126 Identities=29% Similarity=0.301 Sum_probs=75.0
Q ss_pred CcceEEeccCcCCCCCchHHhhcccccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEE
Q 047985 462 NTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVID 541 (930)
Q Consensus 462 ~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 541 (930)
.|...+.+.|.+. .+..++.-+ +.|+.|+|++|+++..- .+..++. |++|||++|.+. .+|..-.....|+.|.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll-~ale~LnLshNk~~~v~--~Lr~l~~-LkhLDlsyN~L~-~vp~l~~~gc~L~~L~ 238 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLL-PALESLNLSHNKFTKVD--NLRRLPK-LKHLDLSYNCLR-HVPQLSMVGCKLQLLN 238 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHH-HHhhhhccchhhhhhhH--HHHhccc-ccccccccchhc-cccccchhhhhheeee
Confidence 4444455555554 333333333 66777777777776432 5556665 777777777776 4444333334477777
Q ss_pred ccCccccccCCccccCCCCCcEecccCccccccC-cccccCCCCCcEEEccCCcc
Q 047985 542 LSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIF-PSWLGTLPDLNVLILKSNKF 595 (930)
Q Consensus 542 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l 595 (930)
+++|.++.. ..+.++.+|+.||+++|-|.+.- -..++.+..|+.|+|.+|++
T Consensus 239 lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 239 LRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 777777643 34567777777777777766541 12234566677777777765
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.18 E-value=6.6e-07 Score=89.50 Aligned_cols=189 Identities=20% Similarity=0.227 Sum_probs=89.5
Q ss_pred cEEEEEcCCCCCcccccC--cccccCCCCCCEEECCCCCCCC--CCCc-------hhccCCCCCCEEEccCCCCCccCCc
Q 047985 69 HVIKLDLSSSCLQGSINS--SSSLFKLVHLEWLDLAFNDFDG--SEIP-------PEIINLSSLSYLNLSSAAFSGQIPS 137 (930)
Q Consensus 69 ~v~~L~L~~~~l~g~~~~--~~~l~~l~~L~~L~Ls~n~~~~--~~ip-------~~l~~l~~L~~L~Ls~n~l~~~~p~ 137 (930)
.++.+||++|.+...... ...+.+-++|++.+++.-.... ..++ +.+-+|++|+..+||.|.|....|.
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e 110 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE 110 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence 466777777766432110 0134555666666666432110 1122 2345566777777777766655554
Q ss_pred cc----cCCCCCcEEEccCCCCCCCccccCCchhhh---------hhCCCCCCEEEcCCccCCCCCch----hccCCCCC
Q 047985 138 EI----LELSKLAYLDLSHNSYYDPVELRKPSLGNL---------ADKLTNLKELVLGDVTISSPIPH----NLTYLSSL 200 (930)
Q Consensus 138 ~l----~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~---------l~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L 200 (930)
.+ ++-+.|++|.+++|-+.. +..+.+... ..+-+.|++..+..|++...... .+..-..|
T Consensus 111 ~L~d~is~~t~l~HL~l~NnGlGp---~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 111 ELGDLISSSTDLVHLKLNNNGLGP---IAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred HHHHHHhcCCCceeEEeecCCCCc---cchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 43 344566666666663211 111222211 23345566666666654332111 11122456
Q ss_pred CEEEccCCCCCCC-----CcccccCCCCCcEEEccCCCCCCc----hhhhhcCCCCCCEEEccCCCCCC
Q 047985 201 TTLSLSGCDLRGR-----IPSSLGNITRLIHLDLSFNKLSDE----LPTFIGTLGSLKELDLLQNNLSG 260 (930)
Q Consensus 201 ~~L~L~~n~l~~~-----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~ 260 (930)
+++.+..|.|.-. +-..+..+.+|+.||+.+|.++.. +..++...+.|++|.+.+|-++.
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 6666666654411 011123445566666666655432 22233344455555555555543
No 50
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=5.8e-08 Score=98.13 Aligned_cols=69 Identities=28% Similarity=0.399 Sum_probs=32.0
Q ss_pred hhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCC-CCCC-CcccccCCCCCcEEEccCCCCC
Q 047985 167 GNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCD-LRGR-IPSSLGNITRLIHLDLSFNKLS 235 (930)
Q Consensus 167 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~Ls~n~l~ 235 (930)
...++.+.+|+.|.+.++.+.+.+...+++-..|+.|+|+.+. ++.. ..--+.+++.|..|+++++.+.
T Consensus 203 ~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 203 HGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred HHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhcc
Confidence 3444555555555555555555555555555555555555442 1110 0111234455555555555443
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.17 E-value=1.5e-07 Score=84.60 Aligned_cols=86 Identities=27% Similarity=0.444 Sum_probs=61.1
Q ss_pred ccEEEcccccccccCchhcc-cccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecC
Q 047985 682 LTAVILSSNRFDGEIPTSIS-NLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVS 760 (930)
Q Consensus 682 L~~L~Ls~N~l~g~ip~~l~-~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls 760 (930)
|+.++|++|.|. ..|+.|. .++.++.|||++|.++ .+|..+..++.|+.|+++.|.+. ..|+-+..|.+|.+||..
T Consensus 55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 666777777776 4444443 4457777888888887 67777888888888888888887 345555667777788777
Q ss_pred CCcccccCCCC
Q 047985 761 DNHFTGPIPQG 771 (930)
Q Consensus 761 ~N~L~g~iP~~ 771 (930)
.|.+. +||..
T Consensus 132 ~na~~-eid~d 141 (177)
T KOG4579|consen 132 ENARA-EIDVD 141 (177)
T ss_pred CCccc-cCcHH
Confidence 77765 66654
No 52
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.93 E-value=6.7e-07 Score=94.96 Aligned_cols=297 Identities=20% Similarity=0.144 Sum_probs=134.9
Q ss_pred CcEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCC-CCCCCchhccCCCCCCEEEccCC-CCCccCCccc-cCCCC
Q 047985 68 GHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDF-DGSEIPPEIINLSSLSYLNLSSA-AFSGQIPSEI-LELSK 144 (930)
Q Consensus 68 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~-~~~~ip~~l~~l~~L~~L~Ls~n-~l~~~~p~~l-~~l~~ 144 (930)
|++++|.+++..-.|.-+-......++++++|++.++.. +....-..-..+++|++|+|..| .++...-..+ ..+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 455666666654433322222334566666666666542 22111111234666777777663 3443322212 34667
Q ss_pred CcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhc----cCCCCCCEEEccCCC-CCCCC-cccc
Q 047985 145 LAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNL----TYLSSLTTLSLSGCD-LRGRI-PSSL 218 (930)
Q Consensus 145 L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~L~~n~-l~~~~-p~~l 218 (930)
|++|+++.+.- +....+.....++..++.+.+++|.-.+ .+.+ +.+..+.++++..|. ++... -..-
T Consensus 218 L~~lNlSwc~q-----i~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~ 290 (483)
T KOG4341|consen 218 LKYLNLSWCPQ-----ISGNGVQALQRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA 290 (483)
T ss_pred HHHhhhccCch-----hhcCcchHHhccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHHHHHh
Confidence 77777776631 1223344445555555555555432111 1111 233445555555543 22111 0111
Q ss_pred cCCCCCcEEEccCCCC-CCchhhhh-cCCCCCCEEEccCCCC-CCCcchhh-cCCCCCCEEEccCCCCCC--CCCCCCCC
Q 047985 219 GNITRLIHLDLSFNKL-SDELPTFI-GTLGSLKELDLLQNNL-SGELPNSI-GNLASLEQVDLSLNRFLG--KVPSSLGN 292 (930)
Q Consensus 219 ~~l~~L~~L~Ls~n~l-~~~~p~~l-~~l~~L~~L~L~~n~l-~~~~p~~l-~~l~~L~~L~Ls~n~l~~--~~p~~l~~ 292 (930)
..+..|+.|+.+++.. +...-.++ .+..+|++|.++.++- +..--..+ .+++.|+.+++..+.... .+...-.+
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 3455666776666533 22222222 3456677777766652 21111112 245666666666654321 11122234
Q ss_pred CcCCcEEEccCCCCCCcc-----Ccccccccccceeeccccccc-CCCcccccCCCCCCEEEccCCCCCCCCchhHHhhc
Q 047985 293 LTQLHWLSLASNDFSGEL-----PASFGNLRSLRTLDVYECKFS-GQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVN 366 (930)
Q Consensus 293 l~~L~~L~Ls~N~l~~~~-----p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 366 (930)
++.|+.|.++++...... ...-..+..|+.+.|+++... ...-+.+..+++|+.+++..++-...-+...+..+
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~ 450 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATH 450 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhh
Confidence 566666666665432111 111123455666666666443 22223344555666666655544333333334344
Q ss_pred ccccc
Q 047985 367 HKLLY 371 (930)
Q Consensus 367 ~~~L~ 371 (930)
+++++
T Consensus 451 lp~i~ 455 (483)
T KOG4341|consen 451 LPNIK 455 (483)
T ss_pred Cccce
Confidence 44443
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.91 E-value=2.6e-05 Score=85.47 Aligned_cols=161 Identities=19% Similarity=0.250 Sum_probs=84.3
Q ss_pred CCCCccEEEccCccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCC-cccccCCCCCccCCCCCc
Q 047985 533 KGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSN-KFHGLIREPKTDCGFPKL 611 (930)
Q Consensus 533 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L 611 (930)
.+..++.|++++|.++. +|. + ..+|+.|+++++.--..+|..+ .++|+.|++++| .+. .+| ++|
T Consensus 50 ~~~~l~~L~Is~c~L~s-LP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP--------~sL 114 (426)
T PRK15386 50 EARASGRLYIKDCDIES-LPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP--------ESV 114 (426)
T ss_pred HhcCCCEEEeCCCCCcc-cCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc--------ccc
Confidence 34667778888777663 341 1 2357777777643334445433 246677777766 332 121 345
Q ss_pred eEEECCCCcCcccCChHHHhhcccceeccccccccccccccCCCCCccceeeeEeeecccccccccccccccEEEccccc
Q 047985 612 RIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNR 691 (930)
Q Consensus 612 ~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~ 691 (930)
+.|+++.|.... +..+|+.|+.|.+.+++
T Consensus 115 e~L~L~~n~~~~---------------------------------------------------L~~LPssLk~L~I~~~n 143 (426)
T PRK15386 115 RSLEIKGSATDS---------------------------------------------------IKNVPNGLTSLSINSYN 143 (426)
T ss_pred ceEEeCCCCCcc---------------------------------------------------cccCcchHhheeccccc
Confidence 566665544320 11223445555554322
Q ss_pred cc--ccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCc-----C-cccCCccccCCCCCCeeecCCCc
Q 047985 692 FD--GEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNR-----F-SGQIPQQLVELTFLEFFNVSDNH 763 (930)
Q Consensus 692 l~--g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~-----l-sg~ip~~l~~L~~L~~L~ls~N~ 763 (930)
.. ..+|..+- ++|+.|++++|... ..|..+. .+|++|+++.|. + .+.+|+.+ .+.....+.++.+.
T Consensus 144 ~~~~~~lp~~LP--sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~~~ 217 (426)
T PRK15386 144 PENQARIDNLIS--PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSPDV 217 (426)
T ss_pred cccccccccccC--CcccEEEecCCCcc-cCccccc--ccCcEEEecccccccccCccccccccc-EechhhhcccCHHH
Confidence 10 01111111 56777888777765 3444443 478888887763 1 23566666 55555555566655
Q ss_pred cc
Q 047985 764 FT 765 (930)
Q Consensus 764 L~ 765 (930)
|+
T Consensus 218 f~ 219 (426)
T PRK15386 218 FK 219 (426)
T ss_pred hh
Confidence 54
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.84 E-value=1.9e-06 Score=77.63 Aligned_cols=88 Identities=19% Similarity=0.308 Sum_probs=46.1
Q ss_pred cccccEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeee
Q 047985 679 PDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFN 758 (930)
Q Consensus 679 ~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ 758 (930)
++.++.|+|++|.|+ .+|.++..+++|+.||++.|.+. ..|..+..|.+|-.||.-.|.+- +||..+---+.....+
T Consensus 76 f~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~ 152 (177)
T KOG4579|consen 76 FPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIK 152 (177)
T ss_pred cchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHH
Confidence 344556666666665 55555666666666666666665 44555555666666666666554 4444422222223333
Q ss_pred cCCCcccccCC
Q 047985 759 VSDNHFTGPIP 769 (930)
Q Consensus 759 ls~N~L~g~iP 769 (930)
+.++++.|.-|
T Consensus 153 lgnepl~~~~~ 163 (177)
T KOG4579|consen 153 LGNEPLGDETK 163 (177)
T ss_pred hcCCcccccCc
Confidence 44444444444
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.70 E-value=2.5e-05 Score=57.24 Aligned_cols=36 Identities=44% Similarity=0.702 Sum_probs=17.7
Q ss_pred ccceeeccCccccccCcccccccCCCCeeeCCCCcCc
Q 047985 705 GLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFS 741 (930)
Q Consensus 705 ~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~ls 741 (930)
+|++|++++|+++ .+|..+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3455555555555 34444555555555555555554
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.63 E-value=3.6e-05 Score=56.37 Aligned_cols=37 Identities=43% Similarity=0.693 Sum_probs=32.5
Q ss_pred CCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCccc
Q 047985 728 TDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFT 765 (930)
Q Consensus 728 ~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~ 765 (930)
++|++|+|++|+++ .+|..+++|+.|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 57999999999999 57878999999999999999998
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=2e-05 Score=80.24 Aligned_cols=108 Identities=25% Similarity=0.261 Sum_probs=63.5
Q ss_pred CCCEEEccCCCCCCCc-chhh-cCCCCCCEEEccCCCCCC--CCCCCCCCCcCCcEEEccCCCCCCccCcccccccccce
Q 047985 247 SLKELDLLQNNLSGEL-PNSI-GNLASLEQVDLSLNRFLG--KVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRT 322 (930)
Q Consensus 247 ~L~~L~L~~n~l~~~~-p~~l-~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 322 (930)
.++.|.+.++.|...- -..| ..++.++.+||.+|.++. .+-..+.+++.|++|+|+.|.+...+-..-....+|++
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 4455556666554221 1122 245678888888888763 23334567788888888888876443322134567777
Q ss_pred eecccccccC-CCcccccCCCCCCEEEccCCCC
Q 047985 323 LDVYECKFSG-QIPSSLSNLTHLSFLDFSLNNF 354 (930)
Q Consensus 323 L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l 354 (930)
|.|.+..+.- .....+..+|.+++|+++.|++
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 7777765542 1223445566666777666643
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.57 E-value=0.00023 Score=78.20 Aligned_cols=9 Identities=33% Similarity=0.929 Sum_probs=4.7
Q ss_pred CCCCCCCCC
Q 047985 901 WDPCHPKTA 909 (930)
Q Consensus 901 ~~~~~~~~~ 909 (930)
|+...||.+
T Consensus 416 w~~y~pk~~ 424 (426)
T PRK15386 416 WKDYFPKRS 424 (426)
T ss_pred hhhcCCCcC
Confidence 555555543
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.48 E-value=6.5e-05 Score=89.54 Aligned_cols=153 Identities=25% Similarity=0.295 Sum_probs=72.1
Q ss_pred cEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCC-Cc-------hhc------cCCCCCCEEEccCCC-CCc
Q 047985 69 HVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSE-IP-------PEI------INLSSLSYLNLSSAA-FSG 133 (930)
Q Consensus 69 ~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~-ip-------~~l------~~l~~L~~L~Ls~n~-l~~ 133 (930)
.++++++.+..+...... .+.+.. |+.|.|.+-...... .. ..+ ..-.+|++||+++.. ++.
T Consensus 61 ~ltki~l~~~~~~~~~~~--~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~ 137 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTLE--MLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSN 137 (699)
T ss_pred eeEEeeccceecchhHHH--HHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhc
Confidence 577788877665433221 223333 677776654322110 00 000 012456666666643 222
Q ss_pred cCCcccc-CCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCC
Q 047985 134 QIPSEIL-ELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRG 212 (930)
Q Consensus 134 ~~p~~l~-~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 212 (930)
.-|..++ .||.|+.|.+++-.+. ...+.....++++|..||+++.+++.. ..++++++|++|.+.+-.+..
T Consensus 138 ~W~~kig~~LPsL~sL~i~~~~~~------~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~ 209 (699)
T KOG3665|consen 138 GWPKKIGTMLPSLRSLVISGRQFD------NDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFES 209 (699)
T ss_pred cHHHHHhhhCcccceEEecCceec------chhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCc
Confidence 2333343 3466666666654221 122444455566666666666555543 445555555555555444432
Q ss_pred -CCcccccCCCCCcEEEccCC
Q 047985 213 -RIPSSLGNITRLIHLDLSFN 232 (930)
Q Consensus 213 -~~p~~l~~l~~L~~L~Ls~n 232 (930)
..-..+.++++|+.||+|..
T Consensus 210 ~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 210 YQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred hhhHHHHhcccCCCeeecccc
Confidence 11223444555555555544
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.39 E-value=8.5e-05 Score=88.54 Aligned_cols=134 Identities=22% Similarity=0.236 Sum_probs=89.5
Q ss_pred CCCCEEECCCCCCCCCCCchhccC-CCCCCEEEccCCCCCc-cCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhh
Q 047985 94 VHLEWLDLAFNDFDGSEIPPEIIN-LSSLSYLNLSSAAFSG-QIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLAD 171 (930)
Q Consensus 94 ~~L~~L~Ls~n~~~~~~ip~~l~~-l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~ 171 (930)
.+|++||+++...-...-|..++. ||+|+.|.+++-.+.. .+-....++++|..||+|+..+ ..+ ..++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI--------~nl-~GIS 192 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI--------SNL-SGIS 192 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc--------cCc-HHHh
Confidence 678999998876443334555664 7999999998876643 2233446789999999998853 222 5688
Q ss_pred CCCCCCEEEcCCccCCC-CCchhccCCCCCCEEEccCCCCCCCC--cc----cccCCCCCcEEEccCCCCCC
Q 047985 172 KLTNLKELVLGDVTISS-PIPHNLTYLSSLTTLSLSGCDLRGRI--PS----SLGNITRLIHLDLSFNKLSD 236 (930)
Q Consensus 172 ~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~--p~----~l~~l~~L~~L~Ls~n~l~~ 236 (930)
++++|++|.+.+-.+.. ..-..+.++++|++||+|........ .. .-..+++|+.||.|+..+..
T Consensus 193 ~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred ccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 89999999998877665 33456778999999999987654221 00 11234555555555544443
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.32 E-value=1.2e-05 Score=85.74 Aligned_cols=13 Identities=23% Similarity=0.263 Sum_probs=7.0
Q ss_pred CCCceEEECCCCc
Q 047985 608 FPKLRIIDLSKNR 620 (930)
Q Consensus 608 l~~L~~LdLs~N~ 620 (930)
.+.|+.+++-+++
T Consensus 425 c~~Leri~l~~~q 437 (483)
T KOG4341|consen 425 CRNLERIELIDCQ 437 (483)
T ss_pred Ccccceeeeechh
Confidence 3455556655544
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.25 E-value=0.0005 Score=66.67 Aligned_cols=107 Identities=25% Similarity=0.242 Sum_probs=71.8
Q ss_pred CCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEecccCccccccC-cccccCCCCCcEEEc
Q 047985 512 WLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIF-PSWLGTLPDLNVLIL 590 (930)
Q Consensus 512 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L 590 (930)
....+||++|.+... ..+..++.|.+|.|++|+|+.+-|.--.-+++|..|.|.+|.|.... -.-+..+|+|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 466677777776522 34556677788888888888776665566677888888888776441 123567888888888
Q ss_pred cCCcccccCC-CCCccCCCCCceEEECCCCc
Q 047985 591 KSNKFHGLIR-EPKTDCGFPKLRIIDLSKNR 620 (930)
Q Consensus 591 ~~N~l~~~~~-~~~~~~~l~~L~~LdLs~N~ 620 (930)
-+|+....-- .....+.+|+|++||...=.
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 8888764321 11234678899999987543
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.20 E-value=0.00057 Score=66.31 Aligned_cols=105 Identities=22% Similarity=0.200 Sum_probs=61.6
Q ss_pred CCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCc-cCcccccccccceeec
Q 047985 247 SLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGE-LPASFGNLRSLRTLDV 325 (930)
Q Consensus 247 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L 325 (930)
+...+||++|.+... ..|..++.|.+|.|.+|+|+...|.--..+++|+.|.|.+|.+... .-.-+..+++|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 445566666665421 2455666677777777777665555444556677777777766531 1123455677777777
Q ss_pred ccccccCCC---cccccCCCCCCEEEccCCC
Q 047985 326 YECKFSGQI---PSSLSNLTHLSFLDFSLNN 353 (930)
Q Consensus 326 ~~n~l~~~~---p~~l~~l~~L~~L~Ls~n~ 353 (930)
-+|..+..- -..+..+++|+.||+..-.
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 777665321 1235567777777776543
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.71 E-value=0.0043 Score=57.92 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=11.8
Q ss_pred ccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEc
Q 047985 218 LGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDL 253 (930)
Q Consensus 218 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 253 (930)
|.++++|+.+.+..+ +.......|.++++|+.+.+
T Consensus 31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITF 65 (129)
T ss_dssp TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEE
T ss_pred ccccccccccccccc-ccccceeeeecccccccccc
Confidence 344444444444332 33222233344434444444
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.70 E-value=0.0044 Score=57.82 Aligned_cols=106 Identities=20% Similarity=0.242 Sum_probs=47.0
Q ss_pred cccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCC
Q 047985 217 SLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQL 296 (930)
Q Consensus 217 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 296 (930)
.|.++++|+.+.+.. .+.......|.++++|+.+.+..+ +...-...|.++++|+.+.+.. .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 355555666666653 344444455666666777776654 4433334556666666666654 3333333455556666
Q ss_pred cEEEccCCCCCCccCcccccccccceeeccc
Q 047985 297 HWLSLASNDFSGELPASFGNLRSLRTLDVYE 327 (930)
Q Consensus 297 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 327 (930)
+.+++..+ +.......|.++ +|+.+.+..
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 66666543 433334445554 555555543
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.46 E-value=0.0021 Score=65.27 Aligned_cols=67 Identities=22% Similarity=0.254 Sum_probs=30.7
Q ss_pred CCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCC
Q 047985 340 NLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLT 406 (930)
Q Consensus 340 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~ 406 (930)
.+++|++|.++.|.+............+++|+++++++|+++.+..+.......+|..|++.+|..+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 3445555555555333222222333444566666666665555444333333344444444444443
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.32 E-value=0.0013 Score=66.74 Aligned_cols=13 Identities=31% Similarity=0.475 Sum_probs=5.5
Q ss_pred cCCcEEEccCCCC
Q 047985 294 TQLHWLSLASNDF 306 (930)
Q Consensus 294 ~~L~~L~Ls~N~l 306 (930)
++|++|++++|++
T Consensus 91 P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 91 PNLKVLNLSGNKI 103 (260)
T ss_pred CceeEEeecCCcc
Confidence 4444444444443
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.82 E-value=0.0019 Score=75.50 Aligned_cols=131 Identities=31% Similarity=0.286 Sum_probs=61.2
Q ss_pred CCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCc-cCCCCC----chhccCCCCCCEEEccCCC-CCCCCc
Q 047985 142 LSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDV-TISSPI----PHNLTYLSSLTTLSLSGCD-LRGRIP 215 (930)
Q Consensus 142 l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n-~l~~~~----~~~l~~l~~L~~L~L~~n~-l~~~~p 215 (930)
++.|+.|.+..+.. +.+..+......+++|++|+++++ ...... ......+++|+.|+++.+. ++...-
T Consensus 187 ~~~L~~l~l~~~~~-----~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l 261 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSK-----ITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL 261 (482)
T ss_pred CchhhHhhhccccc-----CChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH
Confidence 45566666655521 111123344555666666666552 111111 1122344666666666665 443322
Q ss_pred cccc-CCCCCcEEEccCCC-CCCch-hhhhcCCCCCCEEEccCCCCCCC--cchhhcCCCCCCEEEc
Q 047985 216 SSLG-NITRLIHLDLSFNK-LSDEL-PTFIGTLGSLKELDLLQNNLSGE--LPNSIGNLASLEQVDL 277 (930)
Q Consensus 216 ~~l~-~l~~L~~L~Ls~n~-l~~~~-p~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L 277 (930)
..+. .+++|++|.+..+. +++.. -.....++.|++|+++++..... +.....++++|+.|.+
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 2332 25666666665555 34332 22234456677777776654311 2222334555555443
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.72 E-value=0.0023 Score=74.87 Aligned_cols=174 Identities=25% Similarity=0.185 Sum_probs=92.1
Q ss_pred hhCCCCCCEEEcCCccCCCC--CchhccCCCCCCEEEccCC-CCCCCCc----ccccCCCCCcEEEccCCC-CCCchhhh
Q 047985 170 ADKLTNLKELVLGDVTISSP--IPHNLTYLSSLTTLSLSGC-DLRGRIP----SSLGNITRLIHLDLSFNK-LSDELPTF 241 (930)
Q Consensus 170 l~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n-~l~~~~p----~~l~~l~~L~~L~Ls~n~-l~~~~p~~ 241 (930)
...++.|+.|.+.++.-... .......+++|+.|+++++ ......+ .....+++|+.|+++.+. +++..-..
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 34467788887777643332 2344556788888888763 2211111 223455777888888776 55554444
Q ss_pred hcC-CCCCCEEEccCCC-CCCC-cchhhcCCCCCCEEEccCCCCCCC--CCCCCCCCcCCcEEEccCCCCCCccCccccc
Q 047985 242 IGT-LGSLKELDLLQNN-LSGE-LPNSIGNLASLEQVDLSLNRFLGK--VPSSLGNLTQLHWLSLASNDFSGELPASFGN 316 (930)
Q Consensus 242 l~~-l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 316 (930)
+.. +++|++|.+.++. ++.. +-.....+++|++|+++++..... +.....++++|+.|.+.... .
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~----------~ 333 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN----------G 333 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC----------C
Confidence 443 6778888877666 4432 222234567788888877654311 11223334555544332221 1
Q ss_pred ccccceeeccccccc---CCCcccccCCCCCCEEEccCCC
Q 047985 317 LRSLRTLDVYECKFS---GQIPSSLSNLTHLSFLDFSLNN 353 (930)
Q Consensus 317 l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~Ls~n~ 353 (930)
+..++.+.+....-. .........+++++.+.+..+.
T Consensus 334 c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 334 CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 334444444433221 1112234456666666666665
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.59 E-value=0.0042 Score=37.84 Aligned_cols=18 Identities=44% Similarity=0.718 Sum_probs=7.4
Q ss_pred cceeeccCccccccCcccc
Q 047985 706 LQILSLADNSLHGHIPSCL 724 (930)
Q Consensus 706 L~~L~Ls~N~l~g~ip~~l 724 (930)
|+.|||++|+|+ .||..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 344444444444 333333
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.32 E-value=0.0072 Score=36.80 Aligned_cols=21 Identities=43% Similarity=0.713 Sum_probs=12.4
Q ss_pred CCCeeeCCCCcCcccCCccccC
Q 047985 729 DLESLDLSNNRFSGQIPQQLVE 750 (930)
Q Consensus 729 ~L~~LdLs~N~lsg~ip~~l~~ 750 (930)
+|++|||++|+++ .||.+|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3566666666666 56655543
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.31 E-value=0.00088 Score=67.94 Aligned_cols=98 Identities=29% Similarity=0.261 Sum_probs=52.5
Q ss_pred CCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCc-cCcccccccccceeec
Q 047985 247 SLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGE-LPASFGNLRSLRTLDV 325 (930)
Q Consensus 247 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L 325 (930)
+.+.|++-++.++.. .....++.|+.|.|+-|+++.. ..+..+++|++|+|..|.|... .-..+.++++|+.|.|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 444555555555421 1234555666666666665533 2355566666666666655431 1123456677777777
Q ss_pred ccccccCCCcc-----cccCCCCCCEEE
Q 047985 326 YECKFSGQIPS-----SLSNLTHLSFLD 348 (930)
Q Consensus 326 ~~n~l~~~~p~-----~l~~l~~L~~L~ 348 (930)
..|.-.|.-+. .+..+++|+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 77766655443 244566666654
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.75 E-value=0.0026 Score=64.59 Aligned_cols=57 Identities=25% Similarity=0.206 Sum_probs=26.7
Q ss_pred cEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCC
Q 047985 69 HVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFS 132 (930)
Q Consensus 69 ~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~ 132 (930)
.|.+|+.-++++... +-+.+++.|++|.||-|.++.. +.+..|++|++|.|..|.|.
T Consensus 20 ~vkKLNcwg~~L~DI----sic~kMp~lEVLsLSvNkIssL---~pl~rCtrLkElYLRkN~I~ 76 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI----SICEKMPLLEVLSLSVNKISSL---APLQRCTRLKELYLRKNCIE 76 (388)
T ss_pred HhhhhcccCCCccHH----HHHHhcccceeEEeeccccccc---hhHHHHHHHHHHHHHhcccc
Confidence 355555555554321 1234455555555555555432 22444455555555544443
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.51 E-value=0.00097 Score=76.24 Aligned_cols=39 Identities=23% Similarity=0.275 Sum_probs=21.3
Q ss_pred cccceeecccccccCCC----cccccCCCCCCEEEccCCCCCC
Q 047985 318 RSLRTLDVYECKFSGQI----PSSLSNLTHLSFLDFSLNNFSG 356 (930)
Q Consensus 318 ~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~~ 356 (930)
..+++++++.|.++..- ...+..++.++++.++.|.+..
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 44555666666555332 2334455566666666666553
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.85 E-value=0.0017 Score=74.31 Aligned_cols=61 Identities=21% Similarity=0.283 Sum_probs=32.4
Q ss_pred CCEEEccCCCCCCC----CCCCCCCC-cCCcEEEccCCCCCCcc----CcccccccccceeecccccccC
Q 047985 272 LEQVDLSLNRFLGK----VPSSLGNL-TQLHWLSLASNDFSGEL----PASFGNLRSLRTLDVYECKFSG 332 (930)
Q Consensus 272 L~~L~Ls~n~l~~~----~p~~l~~l-~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~L~~n~l~~ 332 (930)
+..|++..|++.+. ....+..+ ..++.++++.|.++..- ...+..++.++++.+++|.+..
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 44455555554322 11223333 45566666666665432 2334456677777777776653
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.44 E-value=0.015 Score=57.79 Aligned_cols=82 Identities=22% Similarity=0.209 Sum_probs=72.2
Q ss_pred cccEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecC
Q 047985 681 ILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVS 760 (930)
Q Consensus 681 ~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls 760 (930)
..+.||++.|++- ..-..|.-++.|..||++.|++. ..|..++++..+..+++..|..+ ..|.++..++.++++++-
T Consensus 43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence 4788999999986 44556777889999999999997 88999999999999999999998 689999999999999999
Q ss_pred CCccc
Q 047985 761 DNHFT 765 (930)
Q Consensus 761 ~N~L~ 765 (930)
.|.|.
T Consensus 120 ~~~~~ 124 (326)
T KOG0473|consen 120 KTEFF 124 (326)
T ss_pred cCcch
Confidence 99865
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=87.71 E-value=0.29 Score=27.60 Aligned_cols=11 Identities=45% Similarity=0.736 Sum_probs=3.3
Q ss_pred cceeeccCccc
Q 047985 706 LQILSLADNSL 716 (930)
Q Consensus 706 L~~L~Ls~N~l 716 (930)
|+.|+|++|+|
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33444444443
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.22 E-value=0.024 Score=56.30 Aligned_cols=82 Identities=21% Similarity=0.111 Sum_probs=66.2
Q ss_pred CCcEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCc
Q 047985 67 TGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLA 146 (930)
Q Consensus 67 ~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 146 (930)
..+|+.||++.+.+...- . .+..++.|..||++.|.+.- +|..++.+..++.+++..|..+ ..|.+++.+++++
T Consensus 41 ~kr~tvld~~s~r~vn~~-~--n~s~~t~~~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLG-K--NFSILTRLVRLDLSKNQIKF--LPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred cceeeeehhhhhHHHhhc-c--chHHHHHHHHHhccHhhHhh--ChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 357999999988774321 1 56677888889999888753 6888888999999999988887 7888899999999
Q ss_pred EEEccCCC
Q 047985 147 YLDLSHNS 154 (930)
Q Consensus 147 ~L~Ls~n~ 154 (930)
++++-++.
T Consensus 115 ~~e~k~~~ 122 (326)
T KOG0473|consen 115 KNEQKKTE 122 (326)
T ss_pred hhhhccCc
Confidence 99998884
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=82.92 E-value=0.83 Score=28.91 Aligned_cols=14 Identities=57% Similarity=0.835 Sum_probs=7.4
Q ss_pred CCCCeeeCCCCcCc
Q 047985 728 TDLESLDLSNNRFS 741 (930)
Q Consensus 728 ~~L~~LdLs~N~ls 741 (930)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555554
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=82.92 E-value=0.83 Score=28.91 Aligned_cols=14 Identities=57% Similarity=0.835 Sum_probs=7.4
Q ss_pred CCCCeeeCCCCcCc
Q 047985 728 TDLESLDLSNNRFS 741 (930)
Q Consensus 728 ~~L~~LdLs~N~ls 741 (930)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555554
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=82.47 E-value=0.23 Score=30.86 Aligned_cols=16 Identities=50% Similarity=0.827 Sum_probs=6.6
Q ss_pred CCCCeeeCCCCcCccc
Q 047985 728 TDLESLDLSNNRFSGQ 743 (930)
Q Consensus 728 ~~L~~LdLs~N~lsg~ 743 (930)
++|++|||++|++++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 3444555555554433
No 82
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=79.06 E-value=0.45 Score=34.53 Aligned_cols=39 Identities=41% Similarity=0.717 Sum_probs=21.2
Q ss_pred cccccceeehheeehhhhcccccCCCCCCCCCCCCCCCCCccccccccccc
Q 047985 878 YERSALLQFKESLTIIRKTSYYIWDPCHPKTASWKPEEANIDCCSQWRTQK 928 (930)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 928 (930)
.|++++++|++.+..- + .....+|.... ..+||+ |.+|+
T Consensus 3 ~d~~aLl~~k~~l~~~---------~-~~~l~~W~~~~-~~~~C~-W~GV~ 41 (43)
T PF08263_consen 3 QDRQALLAFKKSLNND---------P-SGVLSSWNPSS-DSDPCS-WSGVT 41 (43)
T ss_dssp HHHHHHHHHHHCTT-S---------C--CCCTT--TT---S-CCC-STTEE
T ss_pred HHHHHHHHHHHhcccc---------c-CcccccCCCcC-CCCCee-eccEE
Confidence 4566777777766541 1 23345788844 379999 99985
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=78.67 E-value=1.4 Score=27.91 Aligned_cols=16 Identities=44% Similarity=0.675 Sum_probs=7.9
Q ss_pred CCCcEecccCcccccc
Q 047985 559 SNLEFLDLGDNQIRDI 574 (930)
Q Consensus 559 ~~L~~L~Ls~N~l~~~ 574 (930)
++|+.|+|++|+|+.+
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3445555555555444
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=78.67 E-value=1.4 Score=27.91 Aligned_cols=16 Identities=44% Similarity=0.675 Sum_probs=7.9
Q ss_pred CCCcEecccCcccccc
Q 047985 559 SNLEFLDLGDNQIRDI 574 (930)
Q Consensus 559 ~~L~~L~Ls~N~l~~~ 574 (930)
++|+.|+|++|+|+.+
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3445555555555444
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.76 E-value=0.8 Score=45.14 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=18.0
Q ss_pred CCEEEccCCCCCccCCccccCCCCCcEEEccCCC
Q 047985 121 LSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNS 154 (930)
Q Consensus 121 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 154 (930)
++.+|-++..+...--..+.+++.++.|.+.+|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 4555555555554444445555555555555553
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=69.32 E-value=3.4 Score=26.30 Aligned_cols=15 Identities=60% Similarity=0.882 Sum_probs=10.3
Q ss_pred cCCCCeeeCCCCcCc
Q 047985 727 LTDLESLDLSNNRFS 741 (930)
Q Consensus 727 L~~L~~LdLs~N~ls 741 (930)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356777777777775
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=65.69 E-value=39 Score=38.05 Aligned_cols=190 Identities=18% Similarity=0.032 Sum_probs=90.9
Q ss_pred cCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceeec
Q 047985 414 NQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDL 493 (930)
Q Consensus 414 ~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~L 493 (930)
.-+.++++|++.|.+....|..+..+.++ +.++.|.++.-. ...++..-.. ..++++|+
T Consensus 163 pnpr~r~~dls~npi~dkvpihl~~p~~p----l~lr~c~lsskf---------------is~l~~qsg~--~~lteldl 221 (553)
T KOG4242|consen 163 PNPRARQHDLSPNPIGDKVPIHLPQPGNP----LSLRVCELSSKF---------------ISKLLIQSGR--LWLTELDL 221 (553)
T ss_pred CcchhhhhccCCCcccccCCccccCCCCc----cchhhhhhhhhH---------------HHHhhhhhcc--cccccccc
Confidence 34567889999999988888776544444 555555443210 0011100000 23667777
Q ss_pred ccccccCcCccccccccc--CCceeecCCCcccc---ccCcccCCCCCccEEEccCccccc----cCC----ccccCCCC
Q 047985 494 SYNNLSGLLPQCLGNFSD--WLSILDLQHNKFSG---TIPDNLLKGNILKVIDLSDNLLQG----RIP----RSLANCSN 560 (930)
Q Consensus 494 s~N~l~~~~p~~l~~~~~--~L~~L~Ls~N~l~~---~~p~~~~~l~~L~~L~Ls~N~l~~----~~p----~~l~~l~~ 560 (930)
+.|.....+|..+..+.. .++.++.+.-.+.- .-+-....-+.++..+++.|..+- +.+ ..|..-.+
T Consensus 222 s~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~s 301 (553)
T KOG4242|consen 222 STNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPS 301 (553)
T ss_pred ccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCcc
Confidence 777766666654332221 24445544443321 111222333566667776666431 122 22333445
Q ss_pred CcEecccCccccccCcccc-cCC-----CCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCC
Q 047985 561 LEFLDLGDNQIRDIFPSWL-GTL-----PDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLP 626 (930)
Q Consensus 561 L~~L~Ls~N~l~~~~p~~l-~~l-----~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip 626 (930)
+ .|++..+..-..-+..+ -.+ ..=-.++++.|...+.-...-. .+-..+++|+++.|++.|+.-
T Consensus 302 g-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleac-i~g~R~q~l~~rdnnldgeg~ 371 (553)
T KOG4242|consen 302 G-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEAC-IFGQRVQVLLQRDNNLDGEGG 371 (553)
T ss_pred c-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhcc-ccceeeeEeeccccccccccc
Confidence 5 66666555443322111 000 0111345555554432111110 112358888888888887654
No 88
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.40 E-value=1.9 Score=42.59 Aligned_cols=39 Identities=18% Similarity=0.162 Sum_probs=20.3
Q ss_pred CCCceEEECCCCcCcccCChHHHhhcccceecccccccc
Q 047985 608 FPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRY 646 (930)
Q Consensus 608 l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~ 646 (930)
.++|+.|+|++|+=-.+--..++..+++|+.+.+.++.+
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence 466777777766422222223455555555555444433
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=57.46 E-value=39 Score=38.04 Aligned_cols=60 Identities=28% Similarity=0.235 Sum_probs=25.8
Q ss_pred CCcEEEccCCCCCCchhhhhcCC---CCCCEEEccCCCCCC---CcchhhcCCCCCCEEEccCCCC
Q 047985 223 RLIHLDLSFNKLSDELPTFIGTL---GSLKELDLLQNNLSG---ELPNSIGNLASLEQVDLSLNRF 282 (930)
Q Consensus 223 ~L~~L~Ls~n~l~~~~p~~l~~l---~~L~~L~L~~n~l~~---~~p~~l~~l~~L~~L~Ls~n~l 282 (930)
.+.+++++.|.....+|..+..+ ..++.++.+...+.- .-+-..+.-++|+..+++.|..
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 34555555555554444333221 234444444443321 1122233344555555555543
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=55.00 E-value=8.3 Score=24.92 Aligned_cols=14 Identities=50% Similarity=0.781 Sum_probs=8.8
Q ss_pred CCCCeeeCCCCcCc
Q 047985 728 TDLESLDLSNNRFS 741 (930)
Q Consensus 728 ~~L~~LdLs~N~ls 741 (930)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666664
No 91
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=53.85 E-value=8.1 Score=24.56 Aligned_cols=12 Identities=33% Similarity=0.570 Sum_probs=5.6
Q ss_pred cceeeccCcccc
Q 047985 706 LQILSLADNSLH 717 (930)
Q Consensus 706 L~~L~Ls~N~l~ 717 (930)
|+.|+.++|+|+
T Consensus 4 L~~L~vs~N~Lt 15 (26)
T smart00364 4 LKELNVSNNQLT 15 (26)
T ss_pred cceeecCCCccc
Confidence 444444444444
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=45.63 E-value=10 Score=43.37 Aligned_cols=14 Identities=36% Similarity=0.498 Sum_probs=7.5
Q ss_pred CCCEEEcCCccCCC
Q 047985 175 NLKELVLGDVTISS 188 (930)
Q Consensus 175 ~L~~L~L~~n~l~~ 188 (930)
.|++|.+.+|.+..
T Consensus 271 ~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 271 PLEELVLEGNPLCT 284 (585)
T ss_pred CHHHeeecCCcccc
Confidence 35555555555543
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=24.61 E-value=59 Score=37.47 Aligned_cols=15 Identities=7% Similarity=0.217 Sum_probs=8.4
Q ss_pred ccccceeeccccccc
Q 047985 317 LRSLRTLDVYECKFS 331 (930)
Q Consensus 317 l~~L~~L~L~~n~l~ 331 (930)
.+.+..+.|++|++.
T Consensus 217 ~p~i~sl~lsnNrL~ 231 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLY 231 (585)
T ss_pred Ccceeeeecccchhh
Confidence 345555666666554
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.03 E-value=50 Score=45.60 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=27.3
Q ss_pred EcccccccccCchhcccccccceeeccCcccc
Q 047985 686 ILSSNRFDGEIPTSISNLKGLQILSLADNSLH 717 (930)
Q Consensus 686 ~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 717 (930)
||++|+|+-..+..|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68899999666777888999999999999776
Done!