Query 047985
Match_columns 930
No_of_seqs 925 out of 5636
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 08:32:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047985.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047985hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.4E-91 4.9E-96 862.4 50.0 711 4-801 7-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.1E-70 7.1E-75 674.2 41.9 627 69-767 78-743 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 2.9E-58 9.9E-63 560.9 47.9 594 94-776 25-633 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 4.6E-57 1.6E-61 550.3 46.8 597 97-792 7-626 (680)
5 3t6q_A CD180 antigen; protein- 100.0 5.2E-53 1.8E-57 507.6 41.8 522 95-769 34-564 (606)
6 3j0a_A TOLL-like receptor 5; m 100.0 4.4E-54 1.5E-58 534.4 33.5 554 119-801 24-592 (844)
7 3t6q_A CD180 antigen; protein- 100.0 5.3E-52 1.8E-56 498.8 41.2 536 98-790 16-562 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 2.1E-52 7.3E-57 502.2 37.4 459 185-770 91-563 (606)
9 4eco_A Uncharacterized protein 100.0 4.9E-53 1.7E-57 507.9 24.5 506 7-622 28-600 (636)
10 3vq2_A TLR4, TOLL-like recepto 100.0 3E-51 1E-55 492.3 36.5 502 192-792 50-562 (606)
11 4ecn_A Leucine-rich repeat pro 100.0 4E-51 1.4E-55 498.6 33.3 488 5-621 265-863 (876)
12 3j0a_A TOLL-like receptor 5; m 100.0 4.8E-50 1.6E-54 498.2 36.6 520 175-793 25-565 (844)
13 2z63_A TOLL-like receptor 4, v 100.0 2.1E-47 7.2E-52 455.4 34.6 495 120-772 29-538 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 1.6E-46 5.3E-51 445.8 35.4 501 55-770 3-515 (549)
15 2z81_A CD282 antigen, TOLL-lik 100.0 9.6E-47 3.3E-51 447.5 33.3 490 97-792 8-514 (549)
16 2z63_A TOLL-like receptor 4, v 100.0 3.7E-46 1.3E-50 444.7 33.2 491 179-790 33-533 (570)
17 4eco_A Uncharacterized protein 100.0 9.6E-47 3.3E-51 453.2 16.2 361 280-766 193-601 (636)
18 4ecn_A Leucine-rich repeat pro 100.0 2.3E-45 7.8E-50 447.9 24.6 74 688-764 790-863 (876)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-44 4.4E-49 426.1 26.3 456 178-769 4-485 (520)
20 2z7x_B TOLL-like receptor 1, v 100.0 1.4E-44 4.9E-49 425.8 24.4 463 146-745 3-485 (520)
21 4g8a_A TOLL-like receptor 4; l 100.0 2.8E-42 9.6E-47 416.6 36.8 515 143-766 52-581 (635)
22 4g8a_A TOLL-like receptor 4; l 100.0 2.9E-42 1E-46 416.5 33.4 514 95-632 53-590 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.2E-43 1.4E-47 416.9 22.9 447 198-770 52-515 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.4E-41 1.8E-45 398.7 29.2 465 94-745 31-514 (562)
25 1ogq_A PGIP-2, polygalacturona 100.0 3.7E-41 1.3E-45 368.5 18.6 294 4-329 1-302 (313)
26 1jl5_A Outer protein YOPM; leu 100.0 3.6E-39 1.2E-43 370.5 26.0 402 173-770 10-416 (454)
27 1jl5_A Outer protein YOPM; leu 100.0 3.8E-39 1.3E-43 370.3 20.4 425 89-602 6-435 (454)
28 3v47_A TOLL-like receptor 5B a 100.0 1.7E-37 5.8E-42 359.0 32.3 139 486-627 275-413 (455)
29 3bz5_A Internalin-J, INLJ; leu 100.0 5.7E-38 1.9E-42 360.8 26.7 365 89-636 37-401 (457)
30 3v47_A TOLL-like receptor 5B a 100.0 3E-37 1E-41 356.9 30.8 319 194-600 75-412 (455)
31 3bz5_A Internalin-J, INLJ; leu 100.0 7E-36 2.4E-40 343.4 31.8 222 68-327 42-263 (457)
32 1o6v_A Internalin A; bacterial 100.0 1.1E-33 3.8E-38 327.6 33.4 79 682-766 311-389 (466)
33 1o6v_A Internalin A; bacterial 100.0 2.8E-33 9.5E-38 324.3 36.3 235 91-354 43-277 (466)
34 1ogq_A PGIP-2, polygalacturona 100.0 1.4E-34 4.7E-39 316.4 17.5 259 486-797 50-312 (313)
35 2id5_A Lingo-1, leucine rich r 100.0 1.4E-33 4.7E-38 328.2 23.2 344 372-792 15-360 (477)
36 2id5_A Lingo-1, leucine rich r 100.0 1.5E-32 5.3E-37 319.3 26.8 301 223-596 33-333 (477)
37 4fcg_A Uncharacterized protein 100.0 7.5E-33 2.6E-37 304.5 15.7 272 5-352 23-311 (328)
38 3o6n_A APL1; leucine-rich repe 100.0 1.6E-31 5.4E-36 302.2 26.3 349 41-455 2-352 (390)
39 3o6n_A APL1; leucine-rich repe 100.0 2.8E-31 9.5E-36 300.2 25.0 131 486-626 226-356 (390)
40 3oja_B Anopheles plasmodium-re 100.0 3E-31 1E-35 316.6 25.2 317 197-630 50-366 (597)
41 3oja_B Anopheles plasmodium-re 100.0 5.6E-31 1.9E-35 314.3 27.5 347 41-455 8-358 (597)
42 4fmz_A Internalin; leucine ric 100.0 1.1E-29 3.8E-34 282.3 30.1 129 218-355 62-190 (347)
43 4fmz_A Internalin; leucine ric 100.0 4.1E-29 1.4E-33 277.7 32.9 308 89-455 39-346 (347)
44 1z7x_W Ribonuclease inhibitor; 100.0 6E-33 2E-37 321.5 -5.7 59 95-153 4-66 (461)
45 1z7x_W Ribonuclease inhibitor; 100.0 1.3E-32 4.3E-37 318.7 -4.9 147 477-625 276-443 (461)
46 1xku_A Decorin; proteoglycan, 100.0 3.6E-28 1.2E-32 268.1 27.3 106 247-355 53-158 (330)
47 1xku_A Decorin; proteoglycan, 100.0 5E-28 1.7E-32 266.9 26.2 269 94-378 52-329 (330)
48 2ft3_A Biglycan; proteoglycan, 100.0 3.9E-28 1.3E-32 268.0 25.3 126 199-330 34-159 (332)
49 2ft3_A Biglycan; proteoglycan, 100.0 4.7E-28 1.6E-32 267.3 24.1 132 486-619 193-330 (332)
50 3ogk_B Coronatine-insensitive 100.0 6.2E-31 2.1E-35 314.7 -1.3 465 54-619 40-548 (592)
51 2z80_A TOLL-like receptor 2, v 100.0 7.4E-28 2.5E-32 268.2 18.4 282 52-359 26-318 (353)
52 1wwl_A Monocyte differentiatio 99.9 2.3E-28 7.8E-33 267.1 9.0 248 462-767 44-311 (312)
53 2z66_A Variable lymphocyte rec 99.9 2.2E-27 7.6E-32 258.8 15.2 251 56-333 7-263 (306)
54 3ogk_B Coronatine-insensitive 99.9 7.1E-29 2.4E-33 296.8 3.0 391 167-624 105-528 (592)
55 4fcg_A Uncharacterized protein 99.9 1.2E-26 4.2E-31 254.9 20.1 283 41-384 31-317 (328)
56 2z66_A Variable lymphocyte rec 99.9 1.5E-26 5.1E-31 252.2 19.4 257 97-363 10-269 (306)
57 2z80_A TOLL-like receptor 2, v 99.9 7.1E-27 2.4E-31 260.2 16.0 280 415-770 30-319 (353)
58 3zyi_A Leucine-rich repeat-con 99.9 8.1E-26 2.8E-30 260.5 21.9 237 476-766 68-304 (452)
59 1wwl_A Monocyte differentiatio 99.9 7.1E-28 2.4E-32 263.2 3.9 180 171-356 118-310 (312)
60 3zyj_A Leucine-rich repeat-con 99.9 1.1E-25 3.8E-30 258.3 21.6 237 476-766 57-293 (440)
61 1ozn_A Reticulon 4 receptor; N 99.9 7.1E-26 2.4E-30 244.1 18.6 147 215-361 98-244 (285)
62 3zyi_A Leucine-rich repeat-con 99.9 6E-25 2E-29 253.2 24.6 253 96-361 56-309 (452)
63 1ozn_A Reticulon 4 receptor; N 99.9 1.7E-25 5.6E-30 241.2 17.2 255 71-338 14-268 (285)
64 3zyj_A Leucine-rich repeat-con 99.9 1.4E-24 4.9E-29 249.1 25.3 235 94-362 64-299 (440)
65 3g06_A SSPH2 (leucine-rich rep 99.9 1.4E-24 4.6E-29 256.7 24.9 202 486-770 101-302 (622)
66 2p1m_B Transport inhibitor res 99.9 6.6E-28 2.3E-32 288.5 -5.5 262 54-328 33-324 (594)
67 3o53_A Protein LRIM1, AGAP0063 99.9 7.3E-26 2.5E-30 247.8 8.5 246 486-770 34-281 (317)
68 3o53_A Protein LRIM1, AGAP0063 99.9 6.4E-26 2.2E-30 248.3 5.0 261 69-378 11-272 (317)
69 2o6q_A Variable lymphocyte rec 99.9 1.1E-23 3.8E-28 224.8 22.2 217 53-307 2-218 (270)
70 3oja_A Leucine-rich immune mol 99.9 2E-24 6.7E-29 250.3 15.9 231 476-769 21-255 (487)
71 3g06_A SSPH2 (leucine-rich rep 99.9 8.1E-23 2.8E-27 241.6 27.9 266 223-581 41-306 (622)
72 3oja_A Leucine-rich immune mol 99.9 7.4E-25 2.5E-29 253.9 9.8 233 92-346 32-266 (487)
73 2z62_A TOLL-like receptor 4, v 99.9 3.5E-23 1.2E-27 221.8 20.5 228 490-771 11-243 (276)
74 2p1m_B Transport inhibitor res 99.9 3E-26 1E-30 274.1 -4.7 88 533-622 430-519 (594)
75 2z62_A TOLL-like receptor 4, v 99.9 2E-22 7E-27 215.9 20.3 143 216-359 94-241 (276)
76 3rfs_A Internalin B, repeat mo 99.9 1.3E-22 4.5E-27 216.7 18.6 209 117-343 39-247 (272)
77 4glp_A Monocyte differentiatio 99.9 3.8E-23 1.3E-27 225.5 11.3 205 513-766 93-308 (310)
78 2ast_B S-phase kinase-associat 99.9 8.9E-24 3E-28 233.5 5.0 266 54-339 35-314 (336)
79 2o6q_A Variable lymphocyte rec 99.9 3.5E-21 1.2E-25 205.4 24.0 164 195-358 58-221 (270)
80 3goz_A Leucine-rich repeat-con 99.9 2.2E-23 7.4E-28 232.7 5.5 262 465-769 2-301 (362)
81 4glp_A Monocyte differentiatio 99.9 8.8E-22 3E-26 214.7 15.7 231 92-355 62-307 (310)
82 3rfs_A Internalin B, repeat mo 99.9 7.9E-22 2.7E-26 210.7 14.9 222 119-360 19-240 (272)
83 1p9a_G Platelet glycoprotein I 99.9 5.5E-21 1.9E-25 205.8 21.5 204 89-331 5-208 (290)
84 2ca6_A RAN GTPase-activating p 99.9 2.2E-23 7.6E-28 234.9 2.5 207 171-377 91-339 (386)
85 1p9a_G Platelet glycoprotein I 99.9 8.8E-21 3E-25 204.2 21.6 207 115-359 6-212 (290)
86 3m19_A Variable lymphocyte rec 99.9 9.1E-21 3.1E-25 199.9 18.9 192 54-309 3-194 (251)
87 3goz_A Leucine-rich repeat-con 99.9 2.5E-22 8.5E-27 224.1 6.7 257 99-359 3-301 (362)
88 2ast_B S-phase kinase-associat 99.8 4.9E-22 1.7E-26 219.5 8.1 252 95-360 48-311 (336)
89 2ca6_A RAN GTPase-activating p 99.8 1.1E-22 3.7E-27 229.3 2.6 244 111-383 24-318 (386)
90 1h6u_A Internalin H; cell adhe 99.8 5.7E-20 2E-24 199.8 19.9 196 89-332 36-231 (308)
91 1h6u_A Internalin H; cell adhe 99.8 8.7E-20 3E-24 198.4 19.3 173 170-356 59-231 (308)
92 3m19_A Variable lymphocyte rec 99.8 1.4E-19 4.8E-24 190.8 20.0 180 175-357 15-194 (251)
93 2xwt_C Thyrotropin receptor; s 99.8 5E-20 1.7E-24 192.7 15.1 178 95-307 32-218 (239)
94 2xwt_C Thyrotropin receptor; s 99.8 7.3E-20 2.5E-24 191.4 14.8 179 192-378 49-236 (239)
95 3cvr_A Invasion plasmid antige 99.8 9.3E-20 3.2E-24 212.7 15.9 190 486-753 59-255 (571)
96 4ay9_X Follicle-stimulating ho 99.8 3.3E-19 1.1E-23 197.8 17.6 239 466-763 14-257 (350)
97 2o6s_A Variable lymphocyte rec 99.8 5.8E-19 2E-23 180.3 16.3 182 55-292 6-187 (208)
98 3cvr_A Invasion plasmid antige 99.8 8E-20 2.7E-24 213.2 10.7 210 42-319 33-255 (571)
99 2o6s_A Variable lymphocyte rec 99.8 4E-19 1.4E-23 181.5 14.5 175 513-747 30-204 (208)
100 4ay9_X Follicle-stimulating ho 99.8 1.7E-18 6E-23 191.9 16.1 222 94-352 30-256 (350)
101 1h6t_A Internalin B; cell adhe 99.7 1.6E-17 5.5E-22 178.8 17.5 172 89-282 41-212 (291)
102 1m9s_A Internalin B; cell inva 99.7 3.9E-17 1.3E-21 192.8 19.5 175 89-285 38-212 (605)
103 1h6t_A Internalin B; cell adhe 99.7 4.2E-17 1.4E-21 175.6 16.3 173 115-332 42-214 (291)
104 2v70_A SLIT-2, SLIT homolog 2 99.7 3E-17 1E-21 169.0 14.2 160 465-631 15-175 (220)
105 4b8c_D Glucose-repressible alc 99.7 8.4E-19 2.9E-23 212.4 3.0 221 7-264 130-359 (727)
106 2xot_A Amphoterin-induced prot 99.7 2.2E-17 7.4E-22 183.8 13.7 127 489-621 21-148 (361)
107 2v9t_B SLIT homolog 2 protein 99.7 6.3E-17 2.2E-21 166.5 16.1 159 201-362 14-172 (220)
108 3e6j_A Variable lymphocyte rec 99.7 1.2E-16 4.2E-21 165.5 18.2 159 52-260 15-173 (229)
109 2v70_A SLIT-2, SLIT homolog 2 99.7 5.1E-17 1.7E-21 167.2 14.9 159 202-363 15-174 (220)
110 1dce_A Protein (RAB geranylger 99.7 1.8E-20 6E-25 220.1 -13.3 211 116-349 346-567 (567)
111 1m9s_A Internalin B; cell inva 99.7 6.9E-17 2.3E-21 190.7 15.6 191 94-332 21-211 (605)
112 1dce_A Protein (RAB geranylger 99.7 1.6E-19 5.6E-24 211.8 -8.0 202 486-771 349-552 (567)
113 3e6j_A Variable lymphocyte rec 99.7 3.2E-16 1.1E-20 162.4 17.7 156 200-359 21-176 (229)
114 2xot_A Amphoterin-induced prot 99.7 7.4E-17 2.5E-21 179.5 12.7 158 199-356 40-203 (361)
115 2v9t_B SLIT homolog 2 protein 99.7 3.4E-16 1.2E-20 161.0 15.8 135 198-332 32-166 (220)
116 4ezg_A Putative uncharacterize 99.7 2.2E-16 7.5E-21 159.5 12.3 64 218-281 84-147 (197)
117 4b8c_D Glucose-repressible alc 99.7 2.9E-17 9.9E-22 198.9 5.7 90 528-622 217-306 (727)
118 1w8a_A SLIT protein; signaling 99.7 9.8E-17 3.3E-21 161.3 8.5 113 680-792 54-166 (192)
119 4ezg_A Putative uncharacterize 99.7 4.4E-16 1.5E-20 157.3 13.3 153 116-307 41-194 (197)
120 1xeu_A Internalin C; cellular 99.6 1.7E-16 5.8E-21 168.1 9.1 167 94-283 19-185 (263)
121 1w8a_A SLIT protein; signaling 99.6 1.2E-15 4.1E-20 153.3 12.8 137 488-630 10-147 (192)
122 1xeu_A Internalin C; cellular 99.6 4.4E-16 1.5E-20 164.8 9.5 169 117-307 17-185 (263)
123 2ell_A Acidic leucine-rich nuc 99.5 1.2E-14 4E-19 142.7 10.7 132 198-331 24-160 (168)
124 2wfh_A SLIT homolog 2 protein 99.5 4.1E-14 1.4E-18 142.1 13.4 138 488-632 12-149 (193)
125 2ell_A Acidic leucine-rich nuc 99.5 1.9E-14 6.4E-19 141.2 10.7 134 172-307 22-160 (168)
126 2je0_A Acidic leucine-rich nuc 99.5 1.1E-14 3.6E-19 139.9 8.2 125 199-325 18-147 (149)
127 3sb4_A Hypothetical leucine ri 99.5 1.2E-14 4E-19 159.5 8.5 102 486-590 226-328 (329)
128 2je0_A Acidic leucine-rich nuc 99.5 1.6E-14 5.5E-19 138.6 8.4 129 173-303 16-149 (149)
129 3sb4_A Hypothetical leucine ri 99.5 1.1E-14 3.8E-19 159.7 6.8 197 173-374 100-327 (329)
130 2wfh_A SLIT homolog 2 protein 99.5 1.9E-13 6.6E-18 137.1 14.2 134 225-362 13-146 (193)
131 2o6r_A Variable lymphocyte rec 99.5 2.5E-13 8.5E-18 134.4 14.6 113 247-359 29-141 (177)
132 2o6r_A Variable lymphocyte rec 99.5 4.7E-13 1.6E-17 132.4 14.1 133 200-335 9-141 (177)
133 1ds9_A Outer arm dynein; leuci 99.4 4.6E-15 1.6E-19 149.9 -3.3 153 557-765 16-185 (198)
134 3g39_A Variable lymphocyte rec 99.4 6.6E-13 2.3E-17 130.2 9.8 90 680-769 30-119 (170)
135 4fdw_A Leucine rich hypothetic 99.4 1.6E-11 5.6E-16 137.5 20.1 266 92-381 111-383 (401)
136 1a9n_A U2A', U2A'; complex (nu 99.4 7.9E-13 2.7E-17 130.6 7.8 87 266-354 60-152 (176)
137 1a9n_A U2A', U2A'; complex (nu 99.3 9.1E-13 3.1E-17 130.2 7.8 129 196-330 17-152 (176)
138 1ds9_A Outer arm dynein; leuci 99.3 3.7E-15 1.3E-19 150.6 -10.0 110 217-331 43-153 (198)
139 2r9u_A Variable lymphocyte rec 99.3 2.3E-12 8E-17 126.8 10.3 90 680-769 33-122 (174)
140 3g39_A Variable lymphocyte rec 99.3 4.5E-12 1.6E-16 124.3 11.8 109 513-626 11-119 (170)
141 4fdw_A Leucine rich hypothetic 99.3 1E-10 3.4E-15 131.1 20.9 241 118-381 112-358 (401)
142 2r9u_A Variable lymphocyte rec 99.3 1.2E-11 4.2E-16 121.6 11.9 107 514-625 15-121 (174)
143 4fs7_A Uncharacterized protein 99.3 7.2E-11 2.5E-15 132.7 18.5 78 513-593 299-376 (394)
144 4fs7_A Uncharacterized protein 99.2 3.3E-10 1.1E-14 127.3 19.8 131 191-327 64-194 (394)
145 3un9_A NLR family member X1; l 99.2 1.3E-12 4.4E-17 145.0 -2.8 86 198-283 155-252 (372)
146 3un9_A NLR family member X1; l 99.1 1.7E-12 5.8E-17 144.1 -4.5 135 198-332 101-253 (372)
147 2ifg_A High affinity nerve gro 99.1 1.4E-10 4.6E-15 128.1 9.0 86 680-766 31-117 (347)
148 2ifg_A High affinity nerve gro 99.1 3.7E-10 1.3E-14 124.6 11.5 113 515-632 12-126 (347)
149 4gt6_A Cell surface protein; l 98.9 5.9E-08 2E-12 108.8 21.4 85 530-621 306-390 (394)
150 4gt6_A Cell surface protein; l 98.9 1.4E-07 4.8E-12 105.7 23.2 309 240-621 57-369 (394)
151 2ra8_A Uncharacterized protein 98.8 5.1E-09 1.7E-13 115.1 5.8 39 293-331 278-320 (362)
152 2ra8_A Uncharacterized protein 98.7 3.3E-09 1.1E-13 116.6 3.8 40 269-308 278-321 (362)
153 4h09_A Hypothetical leucine ri 98.5 4.9E-06 1.7E-10 92.5 21.2 104 486-593 240-343 (379)
154 4h09_A Hypothetical leucine ri 98.4 7.1E-06 2.4E-10 91.2 20.3 139 486-633 217-355 (379)
155 3rw6_A Nuclear RNA export fact 98.3 1.9E-07 6.5E-12 97.1 2.8 84 685-770 148-238 (267)
156 1io0_A Tropomodulin; LRR prote 98.3 3.5E-07 1.2E-11 90.5 3.9 39 221-259 92-136 (185)
157 1io0_A Tropomodulin; LRR prote 98.3 1.8E-07 6.3E-12 92.5 1.5 16 243-258 148-163 (185)
158 3rw6_A Nuclear RNA export fact 98.2 6.1E-07 2.1E-11 93.3 5.2 78 679-758 169-257 (267)
159 3e4g_A ATP synthase subunit S, 97.7 2.9E-05 9.9E-10 74.8 4.5 34 199-232 62-95 (176)
160 3e4g_A ATP synthase subunit S, 97.6 2E-05 6.9E-10 75.9 2.8 83 271-353 62-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 96.8 0.0009 3.1E-08 65.6 5.1 15 221-235 97-111 (197)
162 1pgv_A TMD-1, tropomodulin TMD 96.6 0.0007 2.4E-08 66.4 2.6 70 115-187 37-111 (197)
163 3rfe_A Platelet glycoprotein I 96.6 0.0028 9.6E-08 58.0 6.1 56 684-741 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.5 0.0026 8.9E-08 58.2 5.5 57 707-765 11-68 (130)
165 2lz0_A Uncharacterized protein 27.6 49 0.0017 27.8 3.7 45 547-592 8-52 (100)
166 2lz0_A Uncharacterized protein 25.4 89 0.003 26.2 4.9 38 264-302 14-51 (100)
167 3ox7_P MH027; urokinase-type p 23.0 28 0.00096 19.5 0.8 10 53-62 5-14 (23)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.4e-91 Score=862.40 Aligned_cols=711 Identities=33% Similarity=0.493 Sum_probs=598.2
Q ss_pred CCCcHHHHHHHHHHHhhcCCCCCccccccCCCccCCCCCCCCCCCCCCCCCCCcccceEecCCCCcEEEEEcCCCCCccc
Q 047985 4 PLCHGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCSWDGVQCNENTGHVIKLDLSSSCLQGS 83 (930)
Q Consensus 4 ~~c~~~~~~aLl~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~~C~w~gv~C~~~~~~v~~L~L~~~~l~g~ 83 (930)
..+.++||+|||+||+++.++. ++++|+. ++|||+|+||+|+ +|+|++|||+++.+.|.
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~---------------~l~~W~~----~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~ 65 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKN---------------LLPDWSS----NKNPCTFDGVTCR--DDKVTSIDLSSKPLNVG 65 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTT---------------SSTTCCT----TSCGGGSTTEEEE--TTEEEEEECTTSCCCEE
T ss_pred ccCCHHHHHHHHHHHhhCCCcc---------------cccCCCC----CCCCcCCcceEEC--CCcEEEEECCCCCcCCc
Confidence 3457889999999999998542 5899986 6799999999998 58999999999999998
Q ss_pred ---ccCcccccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCc--cccCCCCCcEEEccCCCCCCC
Q 047985 84 ---INSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPS--EILELSKLAYLDLSHNSYYDP 158 (930)
Q Consensus 84 ---~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~n~~~~~ 158 (930)
+++ ++..+++|+.++++.+.+.. +|+.++.+++|++|||++|.++|.+|. .++++++|++|++++|.+.
T Consensus 66 ~~~l~~--~l~~L~~L~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~-- 139 (768)
T 3rgz_A 66 FSAVSS--SLLSLTGLESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-- 139 (768)
T ss_dssp HHHHHH--HTTTCTTCCEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEE--
T ss_pred cCccCh--hHhccCcccccCCcCCCcCC--CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccC--
Confidence 776 89999999999999998742 567899999999999999999999998 9999999999999999542
Q ss_pred ccccCCchhhh-hhCCCCCCEEEcCCccCCCCCchh---ccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCC
Q 047985 159 VELRKPSLGNL-ADKLTNLKELVLGDVTISSPIPHN---LTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKL 234 (930)
Q Consensus 159 ~~~~~~~l~~~-l~~l~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 234 (930)
+.++.. +.++++|++|++++|.+++..|.. +.++++|++|++++|.+++..|. ..+++|++|++++|.+
T Consensus 140 -----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l 212 (768)
T 3rgz_A 140 -----FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNF 212 (768)
T ss_dssp -----CCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCC
T ss_pred -----CcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcC
Confidence 233333 378999999999999999998887 88999999999999999987664 8899999999999999
Q ss_pred CCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCccc
Q 047985 235 SDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASF 314 (930)
Q Consensus 235 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 314 (930)
++.+|. ++++++|++|++++|.+++.+|..++.+++|++|++++|++++.+|.. .+++|++|++++|.+++.+|..+
T Consensus 213 ~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~ 289 (768)
T 3rgz_A 213 STGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFL 289 (768)
T ss_dssp CSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCS
T ss_pred CCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHH
Confidence 998887 999999999999999999999999999999999999999999888875 89999999999999999999988
Q ss_pred ccc-cccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCcc
Q 047985 315 GNL-RSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSH 393 (930)
Q Consensus 315 ~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~ 393 (930)
... ++|++|++++|++++.+|..++.+++|++|++++|.++|.+|...+ ..+++|++|++++|++..
T Consensus 290 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l-~~l~~L~~L~Ls~n~l~~----------- 357 (768)
T 3rgz_A 290 SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL-LKMRGLKVLDLSFNEFSG----------- 357 (768)
T ss_dssp CTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHH-TTCTTCCEEECCSSEEEE-----------
T ss_pred HhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHH-hcCCCCCEEeCcCCccCc-----------
Confidence 775 9999999999999999999999999999999999999988887655 677778777777774321
Q ss_pred ccceeeeccCCCCCcchhhhcCC-CcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCc
Q 047985 394 RFRAVSLCSCDLTEIPKFLKNQH-HLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNS 472 (930)
Q Consensus 394 ~L~~L~l~~~~l~~ip~~l~~~~-~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~ 472 (930)
.+|..+..++ +|++|++++|.+.+.+|..+....+++|++|++++ |.
T Consensus 358 -------------~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~-------------------n~ 405 (768)
T 3rgz_A 358 -------------ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN-------------------NG 405 (768)
T ss_dssp -------------CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS-------------------SE
T ss_pred -------------cccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCC-------------------Cc
Confidence 4556666666 89999999999888888776632355565555555 55
Q ss_pred CCCCCchHHhhcccccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCC
Q 047985 473 LTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIP 552 (930)
Q Consensus 473 l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 552 (930)
+++.+|..+..+ ++|++|++++|++++.+|..++.+++ |++|++++|.+++.+|..+..+++|++|++++|++++.+|
T Consensus 406 l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 483 (768)
T 3rgz_A 406 FTGKIPPTLSNC-SELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483 (768)
T ss_dssp EEEECCGGGGGC-TTCCEEECCSSEEESCCCGGGGGCTT-CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred cccccCHHHhcC-CCCCEEECcCCcccCcccHHHhcCCC-CCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCC
Confidence 566788888888 88999999999999999999999886 9999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhh
Q 047985 553 RSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQC 632 (930)
Q Consensus 553 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~ 632 (930)
..+.++++|++|++++|++++.+|.+++.+++|++|+|++|++++.+|..+ ..+++|++||+++|+++|.+|...+..
T Consensus 484 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~g~ip~~~~~~ 561 (768)
T 3rgz_A 484 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL--GDCRSLIWLDLNTNLFNGTIPAAMFKQ 561 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GGCTTCCEEECCSSEEESBCCGGGGTT
T ss_pred HHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCCCEEECCCCccCCcCChHHhcc
Confidence 999999999999999999999999999999999999999999999888766 678999999999999999999775543
Q ss_pred cccceeccccc-c--cccccccc------------CCCCC--cc--c--eeeeE---eeecccccccccccccccEEEcc
Q 047985 633 WNAMKVVNASE-L--RYMQEVIP------------FNEGN--GI--Y--DYSLT---MSNKGQMMSYKKIPDILTAVILS 688 (930)
Q Consensus 633 l~~l~~l~~~~-~--~~~~~~~~------------~~~~~--~~--~--~~~~~---~~~~~~~~~~~~~~~~L~~L~Ls 688 (930)
.. +..+.... . .+...... +.... .. . ..... ...+|...........|+.|||+
T Consensus 562 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs 640 (768)
T 3rgz_A 562 SG-KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640 (768)
T ss_dssp TT-CBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECC
T ss_pred cc-hhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECc
Confidence 22 22111110 0 00000000 00000 00 0 00000 00111111122335679999999
Q ss_pred cccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccccC
Q 047985 689 SNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPI 768 (930)
Q Consensus 689 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g~i 768 (930)
+|+++|.||.+|++++.|+.|||++|+++|.||..|+++++|++||||+|+++|.||..++++++|++||+|+|+|+|+|
T Consensus 641 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~i 720 (768)
T 3rgz_A 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720 (768)
T ss_dssp SSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEEC
T ss_pred CCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCccCCcccCCCCCCCCCCCCCCCCCCC
Q 047985 769 PQGKQFATFDKTSFDGNSGLCGRPLSSECEISE 801 (930)
Q Consensus 769 P~~~~~~~~~~~s~~gn~~Lcg~~l~~~c~~~~ 801 (930)
|.++||++|...+|.|||+|||.|+. .|....
T Consensus 721 P~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~ 752 (768)
T 3rgz_A 721 PEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSN 752 (768)
T ss_dssp CSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred CCchhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence 99999999999999999999999987 897543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.1e-70 Score=674.20 Aligned_cols=627 Identities=31% Similarity=0.417 Sum_probs=525.6
Q ss_pred cEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCch--hccCCCCCCEEEccCCCCCccCCccc-cCCCCC
Q 047985 69 HVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPP--EIINLSSLSYLNLSSAAFSGQIPSEI-LELSKL 145 (930)
Q Consensus 69 ~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~--~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L 145 (930)
+++.++++.+.+ ++....++.+++|++|||++|.+.+. +|. .++++++|++|+|++|.+.+.+|..+ +++++|
T Consensus 78 ~L~~l~~~~~~~---~~l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 153 (768)
T 3rgz_A 78 GLESLFLSNSHI---NGSVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL 153 (768)
T ss_dssp TCCEEECTTSCE---EECCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTC
T ss_pred cccccCCcCCCc---CCCchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCC
Confidence 345555555544 33223799999999999999999876 787 89999999999999999999998876 899999
Q ss_pred cEEEccCCCCCCCccccCCchhhh---hhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCC
Q 047985 146 AYLDLSHNSYYDPVELRKPSLGNL---ADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNIT 222 (930)
Q Consensus 146 ~~L~Ls~n~~~~~~~~~~~~l~~~---l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 222 (930)
++|++++|.+ . +..+.. +.++++|++|++++|.+++..+. ..+++|++|++++|.+++.+|. +++++
T Consensus 154 ~~L~Ls~n~l----~---~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~ 223 (768)
T 3rgz_A 154 EVLDLSANSI----S---GANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCS 223 (768)
T ss_dssp SEEECCSSCC----E---EETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCC
T ss_pred CEEECCCCcc----C---CcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCC
Confidence 9999999954 2 333444 78999999999999999987764 7899999999999999988887 99999
Q ss_pred CCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCC-cCCcEEEc
Q 047985 223 RLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNL-TQLHWLSL 301 (930)
Q Consensus 223 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~L 301 (930)
+|++|++++|.+++.+|..++.+++|++|++++|.+++.+|.. .+++|++|++++|++++.+|..+... ++|++|++
T Consensus 224 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~L 301 (768)
T 3rgz_A 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 301 (768)
T ss_dssp SCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEEC
T ss_pred CCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEEC
Confidence 9999999999999999999999999999999999999888875 89999999999999999999998875 99999999
Q ss_pred cCCCCCCccCcccccccccceeecccccccCCCccc-ccCCCCCCEEEccCCCCCCCCchhHHhhccc-cccEEEccCCc
Q 047985 302 ASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSS-LSNLTHLSFLDFSLNNFSGKMDLDIFLVNHK-LLYHLFLSTNR 379 (930)
Q Consensus 302 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~-~L~~L~Ls~n~ 379 (930)
++|.+++.+|..++.+++|++|++++|+++|.+|.. +..+++|++|++++|.+++.+|... ..++ +|+.|++++|.
T Consensus 302 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~~L~~L~Ls~N~ 379 (768)
T 3rgz_A 302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL--TNLSASLLTLDLSSNN 379 (768)
T ss_dssp CSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTH--HHHTTTCSEEECCSSE
T ss_pred cCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHH--HhhhcCCcEEEccCCC
Confidence 999999999999999999999999999999888876 9999999999999999998888654 4555 99999999997
Q ss_pred ccccccccC-CCCccccceeeeccCCCC-CcchhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCC
Q 047985 380 LSLLTKATS-NTTSHRFRAVSLCSCDLT-EIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGF 457 (930)
Q Consensus 380 l~~~~~~~~-~~~~~~L~~L~l~~~~l~-~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~ 457 (930)
+........ .....+|+.|++++|.+. .+|..+..+++|++|++++|.+++.+|..+. .+++|+.|++++|.+++.
T Consensus 380 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~ 457 (768)
T 3rgz_A 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG--SLSKLRDLKLWLNMLEGE 457 (768)
T ss_dssp EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG--GCTTCCEEECCSSCCCSC
T ss_pred cCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh--cCCCCCEEECCCCcccCc
Confidence 643221111 112568999999999988 7888999999999999999999999998887 788899998888888764
Q ss_pred CC-----CCCcceEEeccCcCCCCCchHHhhcccccceeecccccccCcCcccccccccCCceeecCCCccccccCcccC
Q 047985 458 DQ-----HPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLL 532 (930)
Q Consensus 458 ~~-----~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~ 532 (930)
.+ .++++.+++++|+++|.+|..+..+ ++|++|++++|++++.+|..++.+++ |++|+|++|+++|.+|..+.
T Consensus 458 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~l~ 535 (768)
T 3rgz_A 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNC-TNLNWISLSNNRLTGEIPKWIGRLEN-LAILKLSNNSFSGNIPAELG 535 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEECCSSCCCSCCCGGGGGCTT-CCEEECCSSCCEEECCGGGG
T ss_pred CCHHHcCCCCceEEEecCCcccCcCCHHHhcC-CCCCEEEccCCccCCcCChHHhcCCC-CCEEECCCCcccCcCCHHHc
Confidence 43 5677777777777777777777777 77777777777777777777777775 77777777777777777777
Q ss_pred CCCCccEEEccCccccccCCccccCCCCCcEecccCc----------------------cccccCcccccCCCCCcEEEc
Q 047985 533 KGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDN----------------------QIRDIFPSWLGTLPDLNVLIL 590 (930)
Q Consensus 533 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N----------------------~l~~~~p~~l~~l~~L~~L~L 590 (930)
.+++|++|++++|+++|.+|..+..+..+..+++..+ .+.+..+..+..++.++.+++
T Consensus 536 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 615 (768)
T 3rgz_A 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615 (768)
T ss_dssp GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCT
T ss_pred CCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccc
Confidence 7777777777777777777777776666655554431 234455555666667777788
Q ss_pred cCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccccccccccccCCCCCccceeeeEeeecc
Q 047985 591 KSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKG 670 (930)
Q Consensus 591 ~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (930)
..|.+.|.+|..+ ..+++|+.|||++|+++|.+|.. +..
T Consensus 616 ~~~~~~g~~~~~~--~~l~~L~~LdLs~N~l~g~ip~~-l~~-------------------------------------- 654 (768)
T 3rgz_A 616 TSRVYGGHTSPTF--DNNGSMMFLDMSYNMLSGYIPKE-IGS-------------------------------------- 654 (768)
T ss_dssp TSCEEEEECCCSC--SSSBCCCEEECCSSCCBSCCCGG-GGG--------------------------------------
T ss_pred ccceecccCchhh--hccccccEEECcCCcccccCCHH-Hhc--------------------------------------
Confidence 8899999988766 67899999999999999999965 222
Q ss_pred cccccccccccccEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccC
Q 047985 671 QMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVE 750 (930)
Q Consensus 671 ~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~ 750 (930)
++.|+.|+|++|+++|.||..|+++++|+.||||+|+++|.||..++++++|++||||+|+++|.||.. ..
T Consensus 655 --------l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~ 725 (768)
T 3rgz_A 655 --------MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQ 725 (768)
T ss_dssp --------CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SS
T ss_pred --------cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hh
Confidence 345889999999999999999999999999999999999999999999999999999999999999975 44
Q ss_pred CCCCCeeecCCCc-cccc
Q 047985 751 LTFLEFFNVSDNH-FTGP 767 (930)
Q Consensus 751 L~~L~~L~ls~N~-L~g~ 767 (930)
+..+....+.+|+ |.|.
T Consensus 726 ~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 726 FETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp GGGSCGGGGCSCTEEEST
T ss_pred hccCCHHHhcCCchhcCC
Confidence 5566666778886 7774
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.9e-58 Score=560.93 Aligned_cols=594 Identities=22% Similarity=0.203 Sum_probs=447.4
Q ss_pred CCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhh-hhhC
Q 047985 94 VHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGN-LADK 172 (930)
Q Consensus 94 ~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~-~l~~ 172 (930)
+++++|+|++|.+++. .+..|+++++|++|+|++|.+++..|..++++++|++|++++|.+ ..++. .+.+
T Consensus 25 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l--------~~l~~~~~~~ 95 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL--------SQLSDKTFAF 95 (680)
T ss_dssp TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC--------CCCCTTTTTT
T ss_pred CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc--------CccChhhhcc
Confidence 6788888888887764 455677888888888888888877777778888888888888754 22333 4677
Q ss_pred CCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhc--CCCCCCE
Q 047985 173 LTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIG--TLGSLKE 250 (930)
Q Consensus 173 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~ 250 (930)
+++|++|++++|.+++..|..++++++|++|++++|.+++..|..++++++|++|++++|.+++..+..+. .+++|++
T Consensus 96 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 175 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175 (680)
T ss_dssp CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESE
T ss_pred CCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccE
Confidence 88888888888888777777788888888888888888777777778888888888888888777766554 4577888
Q ss_pred EEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCC---CCCcCCcEEEccCCCCCCccCcccccccc--cceeec
Q 047985 251 LDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSL---GNLTQLHWLSLASNDFSGELPASFGNLRS--LRTLDV 325 (930)
Q Consensus 251 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~L 325 (930)
|++++|.+++..|..+..+++|+.|+++++.+.+.....+ ...++|+.|++++|.+++..|.++..++. |++|++
T Consensus 176 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L 255 (680)
T 1ziw_A 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255 (680)
T ss_dssp EECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEEC
T ss_pred EECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEEC
Confidence 8888888887777778888888888887776643221111 02367888888888888777777777654 888888
Q ss_pred ccccccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCC
Q 047985 326 YECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDL 405 (930)
Q Consensus 326 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l 405 (930)
++|++++..|..++.+++|++|++++|.+++..+.. + ..+++|+.|++++|...... ....+
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~-~~l~~L~~L~L~~~~~~~~~----------------~~~~l 317 (680)
T 1ziw_A 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS-L-HGLFNVRYLNLKRSFTKQSI----------------SLASL 317 (680)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTT-T-TTCTTCCEEECTTCBCCC----------------------C
T ss_pred CCCCcCccCcccccCcccccEeeCCCCccCccChhh-h-cCCCCccEEeccchhhhccc----------------ccccc
Confidence 888887777777788888888888888777654432 2 56777777777765221100 00001
Q ss_pred CCcc-hhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchH-Hhh
Q 047985 406 TEIP-KFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSW-ICN 483 (930)
Q Consensus 406 ~~ip-~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~-~~~ 483 (930)
..++ ..+..+++|++|++++|.+.+..+..+. .+++|++|++++|.+... .++.. +..
T Consensus 318 p~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~~~~~------------------~l~~~~f~~ 377 (680)
T 1ziw_A 318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT--GLINLKYLSLSNSFTSLR------------------TLTNETFVS 377 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBCCCCTTTTT--TCTTCCEEECTTCBSCCC------------------EECTTTTGG
T ss_pred cccChhhcccCCCCCEEECCCCccCCCChhHhc--cccCCcEEECCCCchhhh------------------hcchhhhcc
Confidence 1111 1567788999999999999987777776 788899888888865421 11111 111
Q ss_pred c-ccccceeecccccccCcCcccccccccCCceeecCCCccccccC-cccCCCCCccEEEccCccccccCCccccCCCCC
Q 047985 484 L-SNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIP-DNLLKGNILKVIDLSDNLLQGRIPRSLANCSNL 561 (930)
Q Consensus 484 ~-~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 561 (930)
+ .++|+.|++++|++++..|..+..+++ |++|++++|.+++.+| ..+..+++|++|++++|++++..+..|..+++|
T Consensus 378 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L 456 (680)
T 1ziw_A 378 LAHSPLHILNLTKNKISKIESDAFSWLGH-LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL 456 (680)
T ss_dssp GTTSCCCEEECTTSCCCEECTTTTTTCTT-CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTC
T ss_pred cccCcCceEECCCCCCCeEChhhhhCCCC-CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCccc
Confidence 1 157999999999999988888988886 9999999999988776 678889999999999999999889999999999
Q ss_pred cEecccCcccc--ccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceec
Q 047985 562 EFLDLGDNQIR--DIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVV 639 (930)
Q Consensus 562 ~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l 639 (930)
+.|++++|.+. +.+|..+..+++|++|+|++|++++..+..+ .++++|++|++++|++++..+.. +..
T Consensus 457 ~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~-~~~------- 526 (680)
T 1ziw_A 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML--EGLEKLEILDLQHNNLARLWKHA-NPG------- 526 (680)
T ss_dssp CEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCGGGGSTT-STT-------
T ss_pred ccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhh--ccccccCEEeCCCCCccccchhh-ccC-------
Confidence 99999999987 5688899999999999999999998766555 67899999999999987532110 000
Q ss_pred cccccccccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCcccccc
Q 047985 640 NASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGH 719 (930)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ 719 (930)
.........+.|+.|+|++|+++...+..|+++++|+.|+|++|++++.
T Consensus 527 -------------------------------~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l 575 (680)
T 1ziw_A 527 -------------------------------GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL 575 (680)
T ss_dssp -------------------------------SCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred -------------------------------CcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcC
Confidence 0000011245699999999999944445689999999999999999987
Q ss_pred CcccccccCCCCeeeCCCCcCcccCCcccc-CCCCCCeeecCCCcccccCCCCCCcCc
Q 047985 720 IPSCLGNLTDLESLDLSNNRFSGQIPQQLV-ELTFLEFFNVSDNHFTGPIPQGKQFAT 776 (930)
Q Consensus 720 ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~-~L~~L~~L~ls~N~L~g~iP~~~~~~~ 776 (930)
.|..|+++++|+.|+|++|++++..|..+. .+++|+.+++++|++.+..+.-..|..
T Consensus 576 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~ 633 (680)
T 1ziw_A 576 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVN 633 (680)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEEC
T ss_pred CHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHH
Confidence 778889999999999999999998888887 789999999999999987664233433
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.6e-57 Score=550.33 Aligned_cols=597 Identities=21% Similarity=0.221 Sum_probs=446.9
Q ss_pred CEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCC
Q 047985 97 EWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNL 176 (930)
Q Consensus 97 ~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L 176 (930)
+.+|.+++.++. +|..+. ++|++|+|++|.+++..+..++++++|++|++++|.+. ...+..+.++++|
T Consensus 7 ~~~~cs~~~L~~--ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-------~~~~~~~~~l~~L 75 (680)
T 1ziw_A 7 EVADCSHLKLTQ--VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-------KLEPELCQKLPML 75 (680)
T ss_dssp SEEECCSSCCSS--CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC-------CCCTTHHHHCTTC
T ss_pred CeeECCCCCccc--cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC-------ccCHHHHhcccCc
Confidence 345666666653 566554 78999999999999877778999999999999999542 3335677888999
Q ss_pred CEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCC
Q 047985 177 KELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQN 256 (930)
Q Consensus 177 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 256 (930)
++|++++|.+++..+..|+++++|++|++++|.+++..|..|+++++|++|++++|.+++..|..++++++|++|++++|
T Consensus 76 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 155 (680)
T 1ziw_A 76 KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS
T ss_pred CEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC
Confidence 99999998888776667888899999999999888777778888889999999998888888888888888999999888
Q ss_pred CCCCCcchhhc--CCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccc---cccccceeeccccccc
Q 047985 257 NLSGELPNSIG--NLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFG---NLRSLRTLDVYECKFS 331 (930)
Q Consensus 257 ~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~L~~n~l~ 331 (930)
.+++..+..+. .+++|++|++++|++++..|..+..+++|+.|+++++.+.+.....+. ..++|++|++++|.+.
T Consensus 156 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~ 235 (680)
T 1ziw_A 156 KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235 (680)
T ss_dssp CCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCC
T ss_pred cccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccc
Confidence 88877776654 457888888888888888888888888888888888877543222111 2367788888888887
Q ss_pred CCCcccccCCCC--CCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcc
Q 047985 332 GQIPSSLSNLTH--LSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIP 409 (930)
Q Consensus 332 ~~~p~~l~~l~~--L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip 409 (930)
+..|..+..++. |++|++++|.+++..+.. + ..+++|+.|++++|.+.. ..|
T Consensus 236 ~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~-~-~~l~~L~~L~L~~n~l~~------------------------~~~ 289 (680)
T 1ziw_A 236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS-F-AWLPQLEYFFLEYNNIQH------------------------LFS 289 (680)
T ss_dssp EECTTTTGGGGGSCCCEEECTTSCCCEECTTT-T-TTCTTCCEEECCSCCBSE------------------------ECT
T ss_pred ccChhHhhccCcCCCCEEECCCCCcCccCccc-c-cCcccccEeeCCCCccCc------------------------cCh
Confidence 777777776644 777777777776544321 1 344555555555443221 123
Q ss_pred hhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccc
Q 047985 410 KFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLE 489 (930)
Q Consensus 410 ~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~ 489 (930)
..+..+++|+.|++++|...+.++.. .++.+.. ..+...++++.+++++|.+++..+..+..+ ++|+
T Consensus 290 ~~~~~l~~L~~L~L~~~~~~~~~~~~----~lp~i~~--------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~ 356 (680)
T 1ziw_A 290 HSLHGLFNVRYLNLKRSFTKQSISLA----SLPKIDD--------FSFQWLKCLEHLNMEDNDIPGIKSNMFTGL-INLK 356 (680)
T ss_dssp TTTTTCTTCCEEECTTCBCCC----------CCEECT--------TTTTTCTTCCEEECCSCCBCCCCTTTTTTC-TTCC
T ss_pred hhhcCCCCccEEeccchhhhcccccc----cccccCh--------hhcccCCCCCEEECCCCccCCCChhHhccc-cCCc
Confidence 45566667777777666544322110 0000000 012234556666666666776666667777 8999
Q ss_pred eeecccccccCcC--cccccccc-cCCceeecCCCccccccCcccCCCCCccEEEccCccccccCC-ccccCCCCCcEec
Q 047985 490 SLDLSYNNLSGLL--PQCLGNFS-DWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIP-RSLANCSNLEFLD 565 (930)
Q Consensus 490 ~L~Ls~N~l~~~~--p~~l~~~~-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~ 565 (930)
+|++++|.+.+.. +..+..+. ..|+.|++++|++++..|..+..+++|++|++++|.+++.+| ..|.++++|++|+
T Consensus 357 ~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~ 436 (680)
T 1ziw_A 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY 436 (680)
T ss_dssp EEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEE
T ss_pred EEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEe
Confidence 9999999865432 22333321 249999999999999999999999999999999999998766 6899999999999
Q ss_pred ccCccccccCcccccCCCCCcEEEccCCcccc--cCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccc
Q 047985 566 LGDNQIRDIFPSWLGTLPDLNVLILKSNKFHG--LIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASE 643 (930)
Q Consensus 566 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~ 643 (930)
+++|++++..+..|..+++|+.|++++|.+.+ .+|..+ ..+++|++||+++|++++ +|...+..
T Consensus 437 Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~--~~l~~L~~L~Ls~N~l~~-i~~~~~~~----------- 502 (680)
T 1ziw_A 437 LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF--QPLRNLTILDLSNNNIAN-INDDMLEG----------- 502 (680)
T ss_dssp CCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT--TTCTTCCEEECCSSCCCC-CCTTTTTT-----------
T ss_pred cCCCCcceeChhhhhcCcccccchhccccccccccCCccc--ccCCCCCEEECCCCCCCc-CChhhhcc-----------
Confidence 99999999999999999999999999999974 445444 789999999999999985 44332222
Q ss_pred cccccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCc--------hhcccccccceeeccCcc
Q 047985 644 LRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIP--------TSISNLKGLQILSLADNS 715 (930)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip--------~~l~~l~~L~~L~Ls~N~ 715 (930)
++.|+.|+|++|++++..+ ..++++++|+.|+|++|+
T Consensus 503 -----------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~ 547 (680)
T 1ziw_A 503 -----------------------------------LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG 547 (680)
T ss_dssp -----------------------------------CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC
T ss_pred -----------------------------------ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC
Confidence 3458899999999986422 347899999999999999
Q ss_pred ccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccccCCCCC--CcCccCCcccCCCCCCCCCC
Q 047985 716 LHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGK--QFATFDKTSFDGNSGLCGRP 792 (930)
Q Consensus 716 l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g~iP~~~--~~~~~~~~s~~gn~~Lcg~~ 792 (930)
++...+..|+++++|+.|||++|++++..|..|..+++|+.|++++|++++..|... .+.......+.|||..|.++
T Consensus 548 l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 548 FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 995545579999999999999999998777778999999999999999998776431 34455556677888877643
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.2e-53 Score=507.58 Aligned_cols=522 Identities=20% Similarity=0.204 Sum_probs=359.8
Q ss_pred CCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCC
Q 047985 95 HLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLT 174 (930)
Q Consensus 95 ~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~ 174 (930)
++++|+|++|.+++. .|..|+++++|++|+|++|.+.+..|..|+++++|++|++++|
T Consensus 34 ~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n--------------------- 91 (606)
T 3t6q_A 34 STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN--------------------- 91 (606)
T ss_dssp TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC---------------------
T ss_pred cCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC---------------------
Confidence 456666666665543 3445556666666666666555555555555555555555554
Q ss_pred CCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEcc
Q 047985 175 NLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLL 254 (930)
Q Consensus 175 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 254 (930)
.+++..|..++++++|++|++++|.+++..+..++++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 92 ----------~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 161 (606)
T 3t6q_A 92 ----------PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQ 161 (606)
T ss_dssp ----------CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECC
T ss_pred ----------cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcc
Confidence 4455556667777788888888877776656667777777777777777776443334447777777777
Q ss_pred CCCCCCCcchhhcCCCCCC--EEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccC
Q 047985 255 QNNLSGELPNSIGNLASLE--QVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSG 332 (930)
Q Consensus 255 ~n~l~~~~p~~l~~l~~L~--~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 332 (930)
+|.+++..|..++.+++|+ .|++++|.+++..|..+.. .+|+.|++++|. .++..+..+.+++...+....+.
T Consensus 162 ~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~- 236 (606)
T 3t6q_A 162 NNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFE- 236 (606)
T ss_dssp SSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCT-
T ss_pred cCcccccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhc-
Confidence 7777766667777777777 6777777776665555443 456666666664 22333333333333222211111
Q ss_pred CCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcch-h
Q 047985 333 QIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPK-F 411 (930)
Q Consensus 333 ~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~-~ 411 (930)
.+...+ ++...+ ..+. ..+++.+++++|.+..++. .
T Consensus 237 ----------~~~~~~---------i~~~~~-~~l~-----------------------~~~L~~L~l~~n~l~~~~~~~ 273 (606)
T 3t6q_A 237 ----------DMDDED---------ISPAVF-EGLC-----------------------EMSVESINLQKHYFFNISSNT 273 (606)
T ss_dssp ----------TSCCCC---------CCGGGG-GGGG-----------------------GSEEEEEECTTCCCSSCCTTT
T ss_pred ----------cccccc---------cChhHh-chhh-----------------------cCceeEEEeecCccCccCHHH
Confidence 010000 111111 1110 1134444444444443333 3
Q ss_pred hhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhccccccee
Q 047985 412 LKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESL 491 (930)
Q Consensus 412 l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L 491 (930)
+..+++|++|++++|+++ .+|..+. .+++|++|++++|.++ +..|..+..+ ++|++|
T Consensus 274 ~~~l~~L~~L~l~~n~l~-~lp~~l~--~l~~L~~L~l~~n~l~-------------------~~~~~~~~~l-~~L~~L 330 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLS-ELPSGLV--GLSTLKKLVLSANKFE-------------------NLCQISASNF-PSLTHL 330 (606)
T ss_dssp TTTCTTCSEEECTTSCCS-CCCSSCC--SCTTCCEEECTTCCCS-------------------BGGGGCGGGC-TTCSEE
T ss_pred hccccCCCEEeccCCccC-CCChhhc--ccccCCEEECccCCcC-------------------cCchhhhhcc-CcCCEE
Confidence 666777777777777776 5666554 5666666666555443 3445556666 788999
Q ss_pred ecccccccCcCccc-ccccccCCceeecCCCcccccc--CcccCCCCCccEEEccCccccccCCccccCCCCCcEecccC
Q 047985 492 DLSYNNLSGLLPQC-LGNFSDWLSILDLQHNKFSGTI--PDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGD 568 (930)
Q Consensus 492 ~Ls~N~l~~~~p~~-l~~~~~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 568 (930)
++++|.+.+.+|.. +..+++ |++|++++|.+++.. |..+..+++|++|++++|++++..|..|..+++|+.|++++
T Consensus 331 ~l~~n~~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 409 (606)
T 3t6q_A 331 SIKGNTKRLELGTGCLENLEN-LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409 (606)
T ss_dssp ECCSCSSCCBCCSSTTTTCTT-CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTT
T ss_pred ECCCCCcccccchhhhhccCc-CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCC
Confidence 99999888766654 777775 999999999888765 77788889999999999999888888899999999999999
Q ss_pred ccccccCccc-ccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCccc-CCh-HHHhhcccceeccccccc
Q 047985 569 NQIRDIFPSW-LGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGK-LPS-MAFQCWNAMKVVNASELR 645 (930)
Q Consensus 569 N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~-ip~-~~~~~l~~l~~l~~~~~~ 645 (930)
|++++..|.. +..+++|++|++++|++.+..|..+ ..+++|++|++++|++++. +|. ..+
T Consensus 410 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~--------------- 472 (606)
T 3t6q_A 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF--DGLPALQHLNLQGNHFPKGNIQKTNSL--------------- 472 (606)
T ss_dssp CCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT--TTCTTCCEEECTTCBCGGGEECSSCGG---------------
T ss_pred CcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH--hCCCCCCEEECCCCCCCccccccchhh---------------
Confidence 9998876544 8888999999999999988776655 6788999999999988752 221 001
Q ss_pred cccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCccccccCccccc
Q 047985 646 YMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLG 725 (930)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~ 725 (930)
..++.|+.|++++|++++.+|..|+.+++|+.|+|++|++++.+|..++
T Consensus 473 -------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 521 (606)
T 3t6q_A 473 -------------------------------QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALS 521 (606)
T ss_dssp -------------------------------GGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGT
T ss_pred -------------------------------ccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhC
Confidence 1135688999999999999899999999999999999999999999999
Q ss_pred ccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccccCC
Q 047985 726 NLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIP 769 (930)
Q Consensus 726 ~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g~iP 769 (930)
++++| .|||++|++++.+|..+..+++|++|++++|++.+..+
T Consensus 522 ~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 522 HLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp TCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred ccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99999 99999999999888889999999999999999987665
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.4e-54 Score=534.44 Aligned_cols=554 Identities=23% Similarity=0.264 Sum_probs=339.4
Q ss_pred CCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCch-hhhhhCCCCCCEEEcCCccCCCCCchhccCC
Q 047985 119 SSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSL-GNLADKLTNLKELVLGDVTISSPIPHNLTYL 197 (930)
Q Consensus 119 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l-~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 197 (930)
++|++|||++|.+++..|..++++++|++|+|++|... ..+ +..+.++++|++|++++|.+.+..|..|.++
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~-------~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l 96 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP-------LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL 96 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC-------CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCc-------cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC
Confidence 45566666666665555555666666666666655210 122 2334445555555555555555556666666
Q ss_pred CCCCEEEccCCCCCCCCccc--ccCCCCCcEEEccCCCCCCchh-hhhcCCCCCCEEEccCCCCCCCcchhhcCC--CCC
Q 047985 198 SSLTTLSLSGCDLRGRIPSS--LGNITRLIHLDLSFNKLSDELP-TFIGTLGSLKELDLLQNNLSGELPNSIGNL--ASL 272 (930)
Q Consensus 198 ~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L 272 (930)
++|++|+|++|.+++.+|.. +.++++|++|++++|.+++..+ ..++++++|++|++++|.+++..|..+..+ ++|
T Consensus 97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L 176 (844)
T 3j0a_A 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL 176 (844)
T ss_dssp SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSS
T ss_pred cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCcc
Confidence 66666666666666544443 5666666666666666655433 456666666666666666666555555555 566
Q ss_pred CEEEccCCCCCCCCCCCCCCCcC------CcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCE
Q 047985 273 EQVDLSLNRFLGKVPSSLGNLTQ------LHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSF 346 (930)
Q Consensus 273 ~~L~Ls~n~l~~~~p~~l~~l~~------L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 346 (930)
+.|+++.|.+.+..|..+..+++ |+.|++++|.+++..+..+.... ..+.++.
T Consensus 177 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l---------------------~~~~l~~ 235 (844)
T 3j0a_A 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI---------------------SKSQAFS 235 (844)
T ss_dssp CCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTS---------------------CSCCBSE
T ss_pred ceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhc---------------------Ccccccc
Confidence 66666666666655555544443 55555555555554444433210 1123334
Q ss_pred EEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccC-CCCccccceeeeccCCCCC-cchhhhcCCCcCEEeCC
Q 047985 347 LDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATS-NTTSHRFRAVSLCSCDLTE-IPKFLKNQHHLELLDLA 424 (930)
Q Consensus 347 L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-~~~~~~L~~L~l~~~~l~~-ip~~l~~~~~L~~L~Ls 424 (930)
|.++.+....... .+.+........ .....+++.|++++|.+.. .|..+..+++|+.|+|+
T Consensus 236 L~l~~~~~~~~~~-----------------~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 298 (844)
T 3j0a_A 236 LILAHHIMGAGFG-----------------FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLA 298 (844)
T ss_dssp EECCSSCCBCSSS-----------------CSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEE
T ss_pred eeccccccccccc-----------------ccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECC
Confidence 4433222111000 000000000000 0011223333333333331 23344555566666666
Q ss_pred CCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceeecccccccCcCcc
Q 047985 425 SNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQ 504 (930)
Q Consensus 425 ~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~ 504 (930)
+|++.+..|..+. .+++|++|++++| .+++..|..+..+ ++|+.|++++|++.+..+.
T Consensus 299 ~n~i~~~~~~~~~--~l~~L~~L~Ls~N-------------------~l~~~~~~~~~~l-~~L~~L~L~~N~i~~~~~~ 356 (844)
T 3j0a_A 299 YNKINKIADEAFY--GLDNLQVLNLSYN-------------------LLGELYSSNFYGL-PKVAYIDLQKNHIAIIQDQ 356 (844)
T ss_dssp SCCCCEECTTTTT--TCSSCCEEEEESC-------------------CCSCCCSCSCSSC-TTCCEEECCSCCCCCCCSS
T ss_pred CCcCCCCChHHhc--CCCCCCEEECCCC-------------------CCCccCHHHhcCC-CCCCEEECCCCCCCccChh
Confidence 6666555554444 4455555544444 4443445555555 7888888888888877777
Q ss_pred cccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEecccCccccccC-cccccCCC
Q 047985 505 CLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIF-PSWLGTLP 583 (930)
Q Consensus 505 ~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~ 583 (930)
.|..+++ |++|+|++|.+++ ++ .+++|+.|++++|+++ .+|.. ..+++.|++++|++++.. +..+..++
T Consensus 357 ~~~~l~~-L~~L~Ls~N~l~~-i~----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~ 426 (844)
T 3j0a_A 357 TFKFLEK-LQTLDLRDNALTT-IH----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVP 426 (844)
T ss_dssp CSCSCCC-CCEEEEETCCSCC-CS----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCT
T ss_pred hhcCCCC-CCEEECCCCCCCc-cc----CCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCC
Confidence 7888885 9999999988874 22 2678889999999888 34433 467889999999998863 33456889
Q ss_pred CCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccccccccccccCCCCCccceee
Q 047985 584 DLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYS 663 (930)
Q Consensus 584 ~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 663 (930)
+|++|+|++|++++..+... ...+++|+.|++++|.+++..+....
T Consensus 427 ~L~~L~Ls~N~l~~~~~~~~-~~~~~~L~~L~Ls~N~l~~~~~~~~~--------------------------------- 472 (844)
T 3j0a_A 427 HLQILILNQNRFSSCSGDQT-PSENPSLEQLFLGENMLQLAWETELC--------------------------------- 472 (844)
T ss_dssp TCCEEEEESCCCCCCCSSSS-SCSCTTCCBCEEESCCCSSSCCSCCC---------------------------------
T ss_pred ccceeeCCCCcccccccccc-cccCCccccccCCCCccccccccccc---------------------------------
Confidence 99999999999887654322 24578899999999988743221100
Q ss_pred eEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCccc
Q 047985 664 LTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQ 743 (930)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ 743 (930)
......++.|+.|+|++|++++.+|..|+.+++|+.|+|++|++++..|..+. ++|+.|||++|++++.
T Consensus 473 ---------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~ 541 (844)
T 3j0a_A 473 ---------WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAP 541 (844)
T ss_dssp ---------SSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCC
T ss_pred ---------hhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCC
Confidence 00001135688999999999999999999999999999999999987777776 8999999999999999
Q ss_pred CCccccCCCCCCeeecCCCcccccCCCCCCcCccCCcccCCCCCCCCCCCCCCCCCCC
Q 047985 744 IPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRPLSSECEISE 801 (930)
Q Consensus 744 ip~~l~~L~~L~~L~ls~N~L~g~iP~~~~~~~~~~~s~~gn~~Lcg~~l~~~c~~~~ 801 (930)
+|..|. .|+.|++++|++.+..+. ..|..-...+|..+||.|....|..+.
T Consensus 542 ~~~~~~---~L~~l~l~~Np~~C~c~~----~~f~~~~~~~~~~~~~~~~~~~C~~p~ 592 (844)
T 3j0a_A 542 NPDVFV---SLSVLDITHNKFICECEL----STFINWLNHTNVTIAGPPADIYCVYPD 592 (844)
T ss_dssp CSCCCS---SCCEEEEEEECCCCSSSC----CSHHHHHHHTTTTTCCCGGGCCCSSCS
T ss_pred ChhHhC---CcCEEEecCCCccccccc----HHHHHHHHhcCcccccccccCccCCch
Confidence 997754 688999999999887663 223222234567788877777786543
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.3e-52 Score=498.81 Aligned_cols=536 Identities=20% Similarity=0.216 Sum_probs=368.6
Q ss_pred EEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCC
Q 047985 98 WLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLK 177 (930)
Q Consensus 98 ~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~ 177 (930)
.++.++..++. +|..+. +++++|+|++|.+++..|..++++++|++|++++|
T Consensus 16 ~~~c~~~~l~~--iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n------------------------ 67 (606)
T 3t6q_A 16 TYNCENLGLNE--IPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC------------------------ 67 (606)
T ss_dssp EEECTTSCCSS--CCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC------------------------
T ss_pred eEECCCCCccc--CcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCC------------------------
Confidence 55666655542 455443 25666666666666555555555555555555555
Q ss_pred EEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCC
Q 047985 178 ELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNN 257 (930)
Q Consensus 178 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 257 (930)
.+.+..|..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++..+..++++++|++|++++|.
T Consensus 68 -------~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~ 140 (606)
T 3t6q_A 68 -------QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH 140 (606)
T ss_dssp -------CCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC
T ss_pred -------ccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc
Confidence 2334445555666666666666666665555556666666666666666655545555555555555555555
Q ss_pred CCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCc--EEEccCCCCCCccCcccccccccceeecccccccCCCc
Q 047985 258 LSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLH--WLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIP 335 (930)
Q Consensus 258 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~--~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 335 (930)
+++..+..+..+++|++|++++|.+++..|..++.+++|+ .|++++|.+++..|..+.. .+|++|++++|. .++
T Consensus 141 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~ 216 (606)
T 3t6q_A 141 ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLL 216 (606)
T ss_dssp CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHH
T ss_pred ccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHH
Confidence 5542222233355555555555555544444445555555 4555555555444433322 344444444443 122
Q ss_pred ccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcchhhhcC
Q 047985 336 SSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQ 415 (930)
Q Consensus 336 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~ 415 (930)
..+..+.++....+....+. .. .... +. +..+..+
T Consensus 217 ~~~~~l~~~~l~~l~~~~~~--------------------------~~------------~~~~-----i~--~~~~~~l 251 (606)
T 3t6q_A 217 VIFKGLKNSTIQSLWLGTFE--------------------------DM------------DDED-----IS--PAVFEGL 251 (606)
T ss_dssp HHHHHTTTCEEEEEECCCCT--------------------------TS------------CCCC-----CC--GGGGGGG
T ss_pred HHhhhccccchhheechhhc--------------------------cc------------cccc-----cC--hhHhchh
Confidence 22222222222222111111 00 0000 00 1122222
Q ss_pred C--CcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceeec
Q 047985 416 H--HLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDL 493 (930)
Q Consensus 416 ~--~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~L 493 (930)
. +|+.|++++|.+.+..+..+. .+++|++|++++|+++ .+|..+..+ ++|++|++
T Consensus 252 ~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~--------------------~lp~~l~~l-~~L~~L~l 308 (606)
T 3t6q_A 252 CEMSVESINLQKHYFFNISSNTFH--CFSGLQELDLTATHLS--------------------ELPSGLVGL-STLKKLVL 308 (606)
T ss_dssp GGSEEEEEECTTCCCSSCCTTTTT--TCTTCSEEECTTSCCS--------------------CCCSSCCSC-TTCCEEEC
T ss_pred hcCceeEEEeecCccCccCHHHhc--cccCCCEEeccCCccC--------------------CCChhhccc-ccCCEEEC
Confidence 2 689999999999877776666 6788888888777665 566666666 89999999
Q ss_pred ccccccCcCcccccccccCCceeecCCCccccccCcc-cCCCCCccEEEccCccccccC--CccccCCCCCcEecccCcc
Q 047985 494 SYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDN-LLKGNILKVIDLSDNLLQGRI--PRSLANCSNLEFLDLGDNQ 570 (930)
Q Consensus 494 s~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~Ls~N~ 570 (930)
++|.+++..|..+..++. |++|++++|.+.+.+|.. +..+++|++|++++|.+++.. +..+..+++|++|++++|+
T Consensus 309 ~~n~l~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 387 (606)
T 3t6q_A 309 SANKFENLCQISASNFPS-LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387 (606)
T ss_dssp TTCCCSBGGGGCGGGCTT-CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS
T ss_pred ccCCcCcCchhhhhccCc-CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc
Confidence 999999988989999996 999999999999877754 889999999999999999876 7889999999999999999
Q ss_pred ccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceecccccccccccc
Q 047985 571 IRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEV 650 (930)
Q Consensus 571 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~ 650 (930)
+++..|..+..+++|++|++++|++.+..+.. .+..+++|++|++++|.+++..|.. +..
T Consensus 388 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~-~~~------------------ 447 (606)
T 3t6q_A 388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQS-PFQNLHLLKVLNLSHSLLDISSEQL-FDG------------------ 447 (606)
T ss_dssp CEEECTTTTTTCTTCSEEECTTCCEECCTTCC-TTTTCTTCCEEECTTCCCBTTCTTT-TTT------------------
T ss_pred CCcCCHHHhcCCccCCeEECCCCcCCCcccch-hhhCcccCCEEECCCCccCCcCHHH-HhC------------------
Confidence 99999999999999999999999999876544 2367899999999999998766532 111
Q ss_pred ccCCCCCccceeeeEeeecccccccccccccccEEEccccccccc---CchhcccccccceeeccCccccccCccccccc
Q 047985 651 IPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGE---IPTSISNLKGLQILSLADNSLHGHIPSCLGNL 727 (930)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~---ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L 727 (930)
++.|+.|++++|.+++. .+..++.+++|+.|+|++|++++.+|..|+++
T Consensus 448 ----------------------------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 499 (606)
T 3t6q_A 448 ----------------------------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499 (606)
T ss_dssp ----------------------------CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred ----------------------------CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccc
Confidence 35689999999999873 33678999999999999999999999999999
Q ss_pred CCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccccCCCC-CCcCccCCcccCCCCCCCC
Q 047985 728 TDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQG-KQFATFDKTSFDGNSGLCG 790 (930)
Q Consensus 728 ~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g~iP~~-~~~~~~~~~s~~gn~~Lcg 790 (930)
++|+.|||++|++++.+|..+.+++.| +|++++|++++.+|.. ..+.......+.|||..|.
T Consensus 500 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 500 KMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp TTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred cCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence 999999999999999999999999999 9999999999877753 2333444455667766553
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.1e-52 Score=502.25 Aligned_cols=459 Identities=22% Similarity=0.232 Sum_probs=285.3
Q ss_pred cCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCC-chhhhhcCCCCCCEEEccCCCCCCCcc
Q 047985 185 TISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSD-ELPTFIGTLGSLKELDLLQNNLSGELP 263 (930)
Q Consensus 185 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p 263 (930)
.+++..|..++++++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+++..|
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence 4444445555566666666666666555444555555555555555555544 335555555555555555555554444
Q ss_pred hhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeeccccccc-CCCcccccCCC
Q 047985 264 NSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFS-GQIPSSLSNLT 342 (930)
Q Consensus 264 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~ 342 (930)
..++.+++|+. .+++|++++|.+++..+..+... +|++|++++|.+. +.+|..+.+++
T Consensus 171 ~~~~~l~~L~~--------------------~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~ 229 (606)
T 3vq2_A 171 NDLQFLRENPQ--------------------VNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLA 229 (606)
T ss_dssp TTTHHHHHCTT--------------------CCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTT
T ss_pred hhhhhhhcccc--------------------ccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhcccc
Confidence 44443333320 01144444444443333333222 4444555444443 23344444455
Q ss_pred CCCEEEccCCCCCCCCc-----hhHHhhccccccEEEccCCcccccccccCCCCccccceeee-ccCCCC-CcchhhhcC
Q 047985 343 HLSFLDFSLNNFSGKMD-----LDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSL-CSCDLT-EIPKFLKNQ 415 (930)
Q Consensus 343 ~L~~L~Ls~n~l~~~~~-----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l-~~~~l~-~ip~~l~~~ 415 (930)
.|+.+++..+.+.+... ...+ ..+. ...++.+.+ ..+.+. .+|. +..+
T Consensus 230 ~L~~l~l~~~~~~~~~~l~~~~~~~~-~~l~-----------------------~l~l~~l~l~~~~~~~~~~~~-~~~l 284 (606)
T 3vq2_A 230 GLHVHRLILGEFKDERNLEIFEPSIM-EGLC-----------------------DVTIDEFRLTYTNDFSDDIVK-FHCL 284 (606)
T ss_dssp TCEEEEEEEECCTTSCCCSCCCGGGG-TTGG-----------------------GSEEEEEEECCCTTCCGGGGS-CGGG
T ss_pred ccccccccccccccCCcccccChHHh-hhhh-----------------------hccHhheeccccccccccccc-cccC
Confidence 55544444333322110 0000 0000 112223333 223333 2233 5556
Q ss_pred CCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceeeccc
Q 047985 416 HHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSY 495 (930)
Q Consensus 416 ~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~ 495 (930)
++|+.|++++|.+. .+| .+. .+++|+.|++++| .+ +.+|. + .+ ++|++|++++
T Consensus 285 ~~L~~L~l~~~~~~-~l~-~l~--~~~~L~~L~l~~n-------------------~l-~~lp~-~-~l-~~L~~L~l~~ 337 (606)
T 3vq2_A 285 ANVSAMSLAGVSIK-YLE-DVP--KHFKWQSLSIIRC-------------------QL-KQFPT-L-DL-PFLKSLTLTM 337 (606)
T ss_dssp TTCSEEEEESCCCC-CCC-CCC--TTCCCSEEEEESC-------------------CC-SSCCC-C-CC-SSCCEEEEES
T ss_pred CCCCEEEecCccch-hhh-hcc--ccccCCEEEcccc-------------------cC-ccccc-C-CC-CccceeeccC
Confidence 66666666666653 233 222 3444444444444 44 35552 2 44 7788888888
Q ss_pred ccccCcCcccccccccCCceeecCCCccccc--cCcccCCCCCccEEEccCccccccCCccccCCCCCcEecccCccccc
Q 047985 496 NNLSGLLPQCLGNFSDWLSILDLQHNKFSGT--IPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRD 573 (930)
Q Consensus 496 N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 573 (930)
|...+.+ .+..+++ |++|++++|++++. +|..+..+++|++|++++|.+++ +|..+..+++|+.|++++|++++
T Consensus 338 n~~~~~~--~~~~l~~-L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~ 413 (606)
T 3vq2_A 338 NKGSISF--KKVALPS-LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKR 413 (606)
T ss_dssp CSSCEEC--CCCCCTT-CCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEES
T ss_pred CcCccch--hhccCCC-CCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCC
Confidence 8655443 4556664 88888888888765 36777788888888888888875 45778888888888888888888
Q ss_pred cCc-ccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCccc-CChHHHhhcccceeccccccccccccc
Q 047985 574 IFP-SWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGK-LPSMAFQCWNAMKVVNASELRYMQEVI 651 (930)
Q Consensus 574 ~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~-ip~~~~~~l~~l~~l~~~~~~~~~~~~ 651 (930)
..| ..+..+++|++|++++|++.+..|..+ ..+++|++|++++|.+++. +|.. +.
T Consensus 414 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~-~~-------------------- 470 (606)
T 3vq2_A 414 VTEFSAFLSLEKLLYLDISYTNTKIDFDGIF--LGLTSLNTLKMAGNSFKDNTLSNV-FA-------------------- 470 (606)
T ss_dssp TTTTTTTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSC-CT--------------------
T ss_pred ccChhhhhccccCCEEECcCCCCCccchhhh--cCCCCCCEEECCCCcCCCcchHHh-hc--------------------
Confidence 877 677888888888888888888776655 6678888888888888763 3321 11
Q ss_pred cCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCC
Q 047985 652 PFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLE 731 (930)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~ 731 (930)
.++.|+.|+|++|++++.+|..++.+++|+.|+|++|++++.+|..++++++|+
T Consensus 471 --------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 524 (606)
T 3vq2_A 471 --------------------------NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 524 (606)
T ss_dssp --------------------------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCC
T ss_pred --------------------------cCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCC
Confidence 134588899999999988899999999999999999999998899999999999
Q ss_pred eeeCCCCcCcccCCccccCCC-CCCeeecCCCcccccCCC
Q 047985 732 SLDLSNNRFSGQIPQQLVELT-FLEFFNVSDNHFTGPIPQ 770 (930)
Q Consensus 732 ~LdLs~N~lsg~ip~~l~~L~-~L~~L~ls~N~L~g~iP~ 770 (930)
.|||++|+++ .+|..+..++ +|++|++++|++.+..|.
T Consensus 525 ~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 525 TLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp EEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred EEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 9999999998 6787788887 599999999999876664
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.9e-53 Score=507.89 Aligned_cols=506 Identities=22% Similarity=0.293 Sum_probs=363.8
Q ss_pred cHHHHHHHHHHHhhcCCCCCccccccCCCccCCCCCCCCCCCCCCCCCCCcc---cceEecCCCCcEEEEEcCCCCCccc
Q 047985 7 HGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCSW---DGVQCNENTGHVIKLDLSSSCLQGS 83 (930)
Q Consensus 7 ~~~~~~aLl~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~~C~w---~gv~C~~~~~~v~~L~L~~~~l~g~ 83 (930)
..+|++||.+||.++..+. |...-..++...+|.. +++||.| +||+|+.. |||++|+|+++.+.|.
T Consensus 28 ~~~d~~aL~~~~~~~~~~~------w~~~~~~~~~~~~W~~----~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~ 96 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKN------WSQQGFGTQPGANWNF----NKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGR 96 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGG------CCCCC------CCCCC----SSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEE
T ss_pred HHHHHHHHHHHHHHcCCCC------cccCCcCCccCCCCCC----CCCcccccCCCCeEEcCC-CCEEEEEecCcccCCc
Confidence 3479999999999987542 1111122345679987 6899999 99999865 8999999999999999
Q ss_pred ccCcccccCCCCCCEEECCCCCC------CC-----CCCchhccCCCCCCEEEccCCCCCccCCccccC-CCCCcEEEcc
Q 047985 84 INSSSSLFKLVHLEWLDLAFNDF------DG-----SEIPPEIINLSSLSYLNLSSAAFSGQIPSEILE-LSKLAYLDLS 151 (930)
Q Consensus 84 ~~~~~~l~~l~~L~~L~Ls~n~~------~~-----~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls 151 (930)
+++ ++++|++|++|+|++|.+ .+ ..+|... +..|+ ++++++.+.+.+|..+.. +..+..+++.
T Consensus 97 lp~--~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~ 171 (636)
T 4eco_A 97 VPD--AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQ 171 (636)
T ss_dssp ECG--GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTT
T ss_pred CCh--HHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcc
Confidence 987 999999999999999976 11 0245444 56677 888888888888776652 2233333333
Q ss_pred CCCCCCCccccCCchhhhhhCCCCCCEEEcC--CccCCCCCchhccCCCCCCEEEccCCCCCCC----------------
Q 047985 152 HNSYYDPVELRKPSLGNLADKLTNLKELVLG--DVTISSPIPHNLTYLSSLTTLSLSGCDLRGR---------------- 213 (930)
Q Consensus 152 ~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~--~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~---------------- 213 (930)
...+. ......++.+.+. .|.+++ +|..++++++|++|+|++|.+++.
T Consensus 172 ~~~~~-------------~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~ 237 (636)
T 4eco_A 172 QKSIK-------------KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237 (636)
T ss_dssp SCCCC-------------CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred ccccc-------------cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcc
Confidence 22110 0011122222222 356667 777888888888888888888875
Q ss_pred -Cccccc--CCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCC-CCC-CcchhhcCC------CCCCEEEccCCCC
Q 047985 214 -IPSSLG--NITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNN-LSG-ELPNSIGNL------ASLEQVDLSLNRF 282 (930)
Q Consensus 214 -~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~l------~~L~~L~Ls~n~l 282 (930)
+|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|. ++| .+|..++.+ ++|++|++++|++
T Consensus 238 ~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp HTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred cCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 788877 88888888888888888888888888888888888887 877 788777765 8888888888888
Q ss_pred CCCCCC--CCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCC-CCEEEccCCCCCCCCc
Q 047985 283 LGKVPS--SLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTH-LSFLDFSLNNFSGKMD 359 (930)
Q Consensus 283 ~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~Ls~n~l~~~~~ 359 (930)
+ .+|. .++++++|++|++++|+++|.+| .++.+++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|
T Consensus 318 ~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp 393 (636)
T 4eco_A 318 K-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIP 393 (636)
T ss_dssp S-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCC
T ss_pred C-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccc
Confidence 7 7777 78888888888888888887788 7888888888888888888 77777888888 888888888876 343
Q ss_pred hhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccccCC
Q 047985 360 LDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDP 439 (930)
Q Consensus 360 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~ 439 (930)
.... ...+++|++|++++|.+.+.+|..+...
T Consensus 394 ~~~~------------------------------------------------~~~l~~L~~L~Ls~N~l~~~~p~~l~~~ 425 (636)
T 4eco_A 394 NIFD------------------------------------------------AKSVSVMSAIDFSYNEIGSVDGKNFDPL 425 (636)
T ss_dssp SCCC------------------------------------------------TTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred hhhh------------------------------------------------hcccCccCEEECcCCcCCCcchhhhccc
Confidence 2110 0012356666666666666666544310
Q ss_pred -----CCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceeecccccccCcCccccccccc---
Q 047985 440 -----SMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSD--- 511 (930)
Q Consensus 440 -----~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~--- 511 (930)
.+++|++|++++|+++ .+|..++..+++|++|++++|+++ .+|........
T Consensus 426 ~~~~~~~~~L~~L~Ls~N~l~--------------------~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~ 484 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNNQIS--------------------KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENF 484 (636)
T ss_dssp CSSCCCCCCEEEEECCSSCCC--------------------SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEEC
T ss_pred ccccccCCCCCEEECcCCccC--------------------cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccc
Confidence 2334555555444433 455555543377888888888877 45543332210
Q ss_pred ----CCceeecCCCccccccCcccC--CCCCccEEEccCccccccCCccccCCCCCcEecc------cCccccccCcccc
Q 047985 512 ----WLSILDLQHNKFSGTIPDNLL--KGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDL------GDNQIRDIFPSWL 579 (930)
Q Consensus 512 ----~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L------s~N~l~~~~p~~l 579 (930)
+|++|+|++|+++ .+|..+. .+++|++|+|++|++++ +|..+.++++|++|+| ++|++.+.+|..+
T Consensus 485 ~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l 562 (636)
T 4eco_A 485 KNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI 562 (636)
T ss_dssp TTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG
T ss_pred cccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHH
Confidence 3888888888888 6777776 78888888888888887 7778888888888888 5688899999999
Q ss_pred cCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCc
Q 047985 580 GTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFT 622 (930)
Q Consensus 580 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~ 622 (930)
..+++|++|+|++|++ +.+|..+ .++|+.||+++|++.
T Consensus 563 ~~l~~L~~L~Ls~N~l-~~ip~~~----~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 563 TLCPSLTQLQIGSNDI-RKVNEKI----TPNISVLDIKDNPNI 600 (636)
T ss_dssp GGCSSCCEEECCSSCC-CBCCSCC----CTTCCEEECCSCTTC
T ss_pred hcCCCCCEEECCCCcC-CccCHhH----hCcCCEEECcCCCCc
Confidence 9999999999999999 6666654 279999999999886
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3e-51 Score=492.30 Aligned_cols=502 Identities=20% Similarity=0.169 Sum_probs=377.0
Q ss_pred hhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCC
Q 047985 192 HNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLAS 271 (930)
Q Consensus 192 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 271 (930)
..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++..+..++++++
T Consensus 50 ~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 129 (606)
T 3vq2_A 50 YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129 (606)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTT
T ss_pred hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCC
Confidence 34444444444444444555445555666666666666666666666666666677777777777776555566777777
Q ss_pred CCEEEccCCCCCC-CCCCCCCCCcCCcEEEccCCCCCCccCcccccccccc----eeecccccccCCCcccccCCCCCCE
Q 047985 272 LEQVDLSLNRFLG-KVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLR----TLDVYECKFSGQIPSSLSNLTHLSF 346 (930)
Q Consensus 272 L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~ 346 (930)
|++|++++|.+++ .+|..|+++++|++|++++|++++..|..++.+++|+ +|++++|.+++..+..+.. .+|+.
T Consensus 130 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~ 208 (606)
T 3vq2_A 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHE 208 (606)
T ss_dssp CCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT-CEEEE
T ss_pred CCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccC-ceeee
Confidence 7777777777765 4577777888888888888888777777777777665 8999999998665555544 48999
Q ss_pred EEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcchhhhcCCCcCEEeC-CC
Q 047985 347 LDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDL-AS 425 (930)
Q Consensus 347 L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~~L~~L~L-s~ 425 (930)
|++++|.+.+......+ .+++.|+.+++..+.+.......... ...+..+..+ .++.+++ ..
T Consensus 209 L~L~~n~~~~~~~~~~~-~~l~~L~~l~l~~~~~~~~~~l~~~~---------------~~~~~~l~~l-~l~~l~l~~~ 271 (606)
T 3vq2_A 209 LTLRGNFNSSNIMKTCL-QNLAGLHVHRLILGEFKDERNLEIFE---------------PSIMEGLCDV-TIDEFRLTYT 271 (606)
T ss_dssp EEEESCCSCHHHHHHHH-HTTTTCEEEEEEEECCTTSCCCSCCC---------------GGGGTTGGGS-EEEEEEECCC
T ss_pred eeccCCccchhHHHHHh-ccccccccccccccccccCCcccccC---------------hHHhhhhhhc-cHhheecccc
Confidence 99999998765444444 78888888888765433222111000 0122222333 4677777 77
Q ss_pred CCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceeecccccccCcCccc
Q 047985 426 NKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQC 505 (930)
Q Consensus 426 N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~ 505 (930)
|.+.+.+|. +. .+++|+.|++++|.++. +| .+..+ ++|++|++++|.+ +.+| .
T Consensus 272 ~~~~~~~~~-~~--~l~~L~~L~l~~~~~~~--------------------l~-~l~~~-~~L~~L~l~~n~l-~~lp-~ 324 (606)
T 3vq2_A 272 NDFSDDIVK-FH--CLANVSAMSLAGVSIKY--------------------LE-DVPKH-FKWQSLSIIRCQL-KQFP-T 324 (606)
T ss_dssp TTCCGGGGS-CG--GGTTCSEEEEESCCCCC--------------------CC-CCCTT-CCCSEEEEESCCC-SSCC-C
T ss_pred ccccccccc-cc--cCCCCCEEEecCccchh--------------------hh-hcccc-ccCCEEEcccccC-cccc-c
Confidence 788877776 43 67788888887776653 33 34444 7899999999999 6788 4
Q ss_pred ccccccCCceeecCCCccccccCcccCCCCCccEEEccCcccccc--CCccccCCCCCcEecccCccccccCcccccCCC
Q 047985 506 LGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGR--IPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLP 583 (930)
Q Consensus 506 l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 583 (930)
+ .++. |++|++++|...+.+ .+..+++|++|++++|++++. .|..+..+++|++|++++|.+++. |..+..++
T Consensus 325 ~-~l~~-L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~l~ 399 (606)
T 3vq2_A 325 L-DLPF-LKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLE 399 (606)
T ss_dssp C-CCSS-CCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE-CCCCTTCT
T ss_pred C-CCCc-cceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccc-hhhccCCC
Confidence 5 7775 999999999766544 567889999999999999977 488899999999999999999885 58899999
Q ss_pred CCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccccccccccccCCCCCccceee
Q 047985 584 DLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYS 663 (930)
Q Consensus 584 ~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 663 (930)
+|++|++++|++.+..+.. .+..+++|++|++++|.+++.+|.. +..
T Consensus 400 ~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~-~~~------------------------------- 446 (606)
T 3vq2_A 400 ELQHLDFQHSTLKRVTEFS-AFLSLEKLLYLDISYTNTKIDFDGI-FLG------------------------------- 446 (606)
T ss_dssp TCCEEECTTSEEESTTTTT-TTTTCTTCCEEECTTSCCEECCTTT-TTT-------------------------------
T ss_pred CCCeeECCCCccCCccChh-hhhccccCCEEECcCCCCCccchhh-hcC-------------------------------
Confidence 9999999999999887622 2367899999999999998766642 111
Q ss_pred eEeeecccccccccccccccEEEccccccccc-CchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcc
Q 047985 664 LTMSNKGQMMSYKKIPDILTAVILSSNRFDGE-IPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSG 742 (930)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~-ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg 742 (930)
.+.|+.|++++|.+++. +|..++.+++|+.|+|++|++++.+|..++++++|++|+|++|++++
T Consensus 447 ---------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 511 (606)
T 3vq2_A 447 ---------------LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 511 (606)
T ss_dssp ---------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred ---------------CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCC
Confidence 34589999999999984 78899999999999999999999999999999999999999999999
Q ss_pred cCCccccCCCCCCeeecCCCcccccCCCC-CCcC-ccCCcccCCCCCCCCCC
Q 047985 743 QIPQQLVELTFLEFFNVSDNHFTGPIPQG-KQFA-TFDKTSFDGNSGLCGRP 792 (930)
Q Consensus 743 ~ip~~l~~L~~L~~L~ls~N~L~g~iP~~-~~~~-~~~~~s~~gn~~Lcg~~ 792 (930)
.+|..+..+++|++|++++|+++ .+|.. ..+. ......+.|||..|.++
T Consensus 512 ~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 512 LDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp EEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred cCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 99999999999999999999999 67765 1121 23344567888777654
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4e-51 Score=498.59 Aligned_cols=488 Identities=21% Similarity=0.287 Sum_probs=325.4
Q ss_pred CCcHHHHHHHHHHHhhcCCCCCccccccCCCccCCCCCCCCCCCC-CCCCCC--Ccc------------cceEecCCCCc
Q 047985 5 LCHGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEE-GNNIDC--CSW------------DGVQCNENTGH 69 (930)
Q Consensus 5 ~c~~~~~~aLl~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~-~~~~~~--C~w------------~gv~C~~~~~~ 69 (930)
.+..+|++||++||+++.++ +|+... ....+| |.| .||+|+. .+|
T Consensus 265 ~~~~~d~~ALl~~k~~l~~~-------------------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~ 324 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALDGK-------------------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGR 324 (876)
T ss_dssp CHHHHHHHHHHHHHHHTTGG-------------------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSC
T ss_pred ccchHHHHHHHHHHHHcCCC-------------------CCCcCCCcccccCCccccccccccccccCcCceEecC-CCC
Confidence 45568999999999999643 565420 001345 999 9999987 589
Q ss_pred EEEEEcCCCCCcccccCcccccCCCCCCEEEC-CCCCCCCCCCchhc---------------------------------
Q 047985 70 VIKLDLSSSCLQGSINSSSSLFKLVHLEWLDL-AFNDFDGSEIPPEI--------------------------------- 115 (930)
Q Consensus 70 v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~L-s~n~~~~~~ip~~l--------------------------------- 115 (930)
|+.|+|+++++.|.+++ .+++|++|++|+| ++|.++|. .|...
T Consensus 325 V~~L~Ls~~~L~G~ip~--~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 325 VTGLSLAGFGAKGRVPD--AIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp EEEEECTTTCCEEEECG--GGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred EEEEECccCCCCCcCch--HHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 99999999999999987 9999999999999 88876654 12110
Q ss_pred ------------------cCCCCCCEEEccC--CCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCC
Q 047985 116 ------------------INLSSLSYLNLSS--AAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTN 175 (930)
Q Consensus 116 ------------------~~l~~L~~L~Ls~--n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~ 175 (930)
.....++.+.+.. |.+++ +|. .+.++++
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~-------------------------------~l~~L~~ 449 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISK-------------------------------AIQRLTK 449 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-------------------------------GGGGCTT
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhH-------------------------------HHhcCCC
Confidence 0111122222221 33443 444 4445555
Q ss_pred CCEEEcCCccCCC-----------------CCchhcc--CCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCC-CC
Q 047985 176 LKELVLGDVTISS-----------------PIPHNLT--YLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNK-LS 235 (930)
Q Consensus 176 L~~L~L~~n~l~~-----------------~~~~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~ 235 (930)
|++|++++|.+++ .+|..++ ++++|++|+|++|.+.+.+|..++++++|++|++++|+ ++
T Consensus 450 L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ls 529 (876)
T 4ecn_A 450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529 (876)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSC
T ss_pred CCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcc
Confidence 5555555555555 4788877 88999999999998888889889999999999999997 88
Q ss_pred C-chhhhhcCCC-------CCCEEEccCCCCCCCcch--hhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCC
Q 047985 236 D-ELPTFIGTLG-------SLKELDLLQNNLSGELPN--SIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASND 305 (930)
Q Consensus 236 ~-~~p~~l~~l~-------~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 305 (930)
+ .+|..++.++ +|++|+|++|.++ .+|. .++++++|+.|+|++|+++ .+| .|+.+++|+.|+|++|.
T Consensus 530 g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 530 AAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQ 606 (876)
T ss_dssp HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSC
T ss_pred cccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCc
Confidence 7 7887666554 8999999999998 7888 8899999999999999988 777 88899999999999999
Q ss_pred CCCccCcccccccc-cceeecccccccCCCcccccCCCC--CCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccc
Q 047985 306 FSGELPASFGNLRS-LRTLDVYECKFSGQIPSSLSNLTH--LSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSL 382 (930)
Q Consensus 306 l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 382 (930)
++ .+|..+..+++ |++|++++|+++ .+|..+..++. |+.|++++|.+.+.+|...
T Consensus 607 l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~-------------------- 664 (876)
T 4ecn_A 607 IE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS-------------------- 664 (876)
T ss_dssp CS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS--------------------
T ss_pred cc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccch--------------------
Confidence 88 78888888888 999999999988 77877776654 8889999888887654210
Q ss_pred cccccCCCCccccceeeeccCCCCCcchhh-hcCCCcCEEeCCCCCCcCCCCccccCCC------CCCceEEeccCccCc
Q 047985 383 LTKATSNTTSHRFRAVSLCSCDLTEIPKFL-KNQHHLELLDLASNKINGKVPKWLLDPS------MQNFGHLNLSHNFLT 455 (930)
Q Consensus 383 ~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l-~~~~~L~~L~Ls~N~l~~~~p~~~~~~~------l~~L~~L~Ls~N~l~ 455 (930)
.........+|+.|++++|.+..+|..+ ..+++|+.|+|++|++. .+|....... +++|+.|+|++|++
T Consensus 665 --~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L- 740 (876)
T 4ecn_A 665 --CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKL- 740 (876)
T ss_dssp --SCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCC-
T ss_pred --hhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCC-
Confidence 0000012235566666666666677655 47788888888888887 6665543110 11333333333322
Q ss_pred CCCCCCCcceEEeccCcCCCCCchHHh--hcccccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCC
Q 047985 456 GFDQHPNTVNYLVSNNSLTGEIPSWIC--NLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLK 533 (930)
Q Consensus 456 ~~~~~~~l~~l~ls~n~l~g~ip~~~~--~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~ 533 (930)
+ .+|..+. .+ ++|+.|+|++|++++ +|..+..+++ |+.|+|++|+
T Consensus 741 ------------------~-~lp~~l~~~~l-~~L~~L~Ls~N~L~~-lp~~l~~L~~-L~~L~Ls~N~----------- 787 (876)
T 4ecn_A 741 ------------------T-SLSDDFRATTL-PYLSNMDVSYNCFSS-FPTQPLNSSQ-LKAFGIRHQR----------- 787 (876)
T ss_dssp ------------------C-CCCGGGSTTTC-TTCCEEECCSSCCSS-CCCGGGGCTT-CCEEECCCCB-----------
T ss_pred ------------------c-cchHHhhhccC-CCcCEEEeCCCCCCc-cchhhhcCCC-CCEEECCCCC-----------
Confidence 2 3444443 33 555555555555554 4555555553 5555554422
Q ss_pred CCCccEEEccCccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceE
Q 047985 534 GNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRI 613 (930)
Q Consensus 534 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 613 (930)
++++|++.+.+|..|.++++|+.|+|++|++ +.+|..+. ++|+.|+|++|++....+..+ +....+..
T Consensus 788 -------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~--~~~~~~~~ 855 (876)
T 4ecn_A 788 -------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSV--CPYIEAGM 855 (876)
T ss_dssp -------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGG--HHHHHTTC
T ss_pred -------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHc--cccccchh
Confidence 1233566666666666666666666666666 45555543 466666666666655433222 22223334
Q ss_pred EECCCCcC
Q 047985 614 IDLSKNRF 621 (930)
Q Consensus 614 LdLs~N~l 621 (930)
+.|++|+.
T Consensus 856 ~~L~~n~~ 863 (876)
T 4ecn_A 856 YVLLYDKT 863 (876)
T ss_dssp CEEECCTT
T ss_pred eeecCCCc
Confidence 44444443
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.8e-50 Score=498.22 Aligned_cols=520 Identities=22% Similarity=0.256 Sum_probs=374.6
Q ss_pred CCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCC-cccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEc
Q 047985 175 NLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRI-PSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDL 253 (930)
Q Consensus 175 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 253 (930)
+|++|++++|.+++..|..|.++++|++|+|++|...+.+ |.+|.++++|++|+|++|.+.+..|.+|+++++|++|+|
T Consensus 25 ~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 104 (844)
T 3j0a_A 25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRL 104 (844)
T ss_dssp TCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEEC
T ss_pred CcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeC
Confidence 3444444444555555666667777777777777554444 566777777777777777777777777777777777777
Q ss_pred cCCCCCCCcchh--hcCCCCCCEEEccCCCCCCCCC-CCCCCCcCCcEEEccCCCCCCccCcccccc--cccceeecccc
Q 047985 254 LQNNLSGELPNS--IGNLASLEQVDLSLNRFLGKVP-SSLGNLTQLHWLSLASNDFSGELPASFGNL--RSLRTLDVYEC 328 (930)
Q Consensus 254 ~~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l--~~L~~L~L~~n 328 (930)
++|.+++.+|.. |+++++|++|+|++|.+++..+ ..|+++++|++|+|++|.+++..+..+..+ ++|+.|++++|
T Consensus 105 s~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n 184 (844)
T 3j0a_A 105 YFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184 (844)
T ss_dssp TTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCS
T ss_pred cCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCC
Confidence 777777655554 7777777777777777776544 457777788888888887777777777766 77888888888
Q ss_pred cccCCCcccccCCCC------CCEEEccCCCCCCCCchhHHh-hccccccEEEccCCcccccccccCCCCccccceeeec
Q 047985 329 KFSGQIPSSLSNLTH------LSFLDFSLNNFSGKMDLDIFL-VNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLC 401 (930)
Q Consensus 329 ~l~~~~p~~l~~l~~------L~~L~Ls~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~ 401 (930)
.+.+..|..++.+++ |+.|++++|.+++.++..... ....++..+.++.+.+.. .+.
T Consensus 185 ~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~----------------~~~ 248 (844)
T 3j0a_A 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA----------------GFG 248 (844)
T ss_dssp BSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC----------------SSS
T ss_pred ccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc----------------ccc
Confidence 877777766666555 888888888877766543321 123456667666442211 011
Q ss_pred cCCCCCc-chhhhc--CCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCc
Q 047985 402 SCDLTEI-PKFLKN--QHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIP 478 (930)
Q Consensus 402 ~~~l~~i-p~~l~~--~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip 478 (930)
.+.+..+ +..+.. .++|+.|++++|.+.+..|..+. .+++|+.|++++|+++ +..|
T Consensus 249 ~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~i~-------------------~~~~ 307 (844)
T 3j0a_A 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE--TLKDLKVLNLAYNKIN-------------------KIAD 307 (844)
T ss_dssp CSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS--SCCCCCEEEEESCCCC-------------------EECT
T ss_pred ccccCCCChhhhhccccCCccEEECCCCcccccChhhhh--cCCCCCEEECCCCcCC-------------------CCCh
Confidence 1122211 122222 36788888888888776666655 5666666666555444 4445
Q ss_pred hHHhhcccccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCC
Q 047985 479 SWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANC 558 (930)
Q Consensus 479 ~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 558 (930)
..+..+ ++|++|++++|.+++..|..+..++. |++|++++|++.+..+..+..+++|++|+|++|.+++. ..+
T Consensus 308 ~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~ 380 (844)
T 3j0a_A 308 EAFYGL-DNLQVLNLSYNLLGELYSSNFYGLPK-VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFI 380 (844)
T ss_dssp TTTTTC-SSCCEEEEESCCCSCCCSCSCSSCTT-CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSC
T ss_pred HHhcCC-CCCCEEECCCCCCCccCHHHhcCCCC-CCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCC
Confidence 555666 78999999999998888888888885 99999999998877777788888999999999988753 237
Q ss_pred CCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhccccee
Q 047985 559 SNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKV 638 (930)
Q Consensus 559 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~ 638 (930)
++|+.|++++|+++.. |.. ..+++.|++++|++.+... ......+++|+.|+|++|++++..+...+
T Consensus 381 ~~L~~L~l~~N~l~~l-~~~---~~~l~~L~ls~N~l~~l~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-------- 447 (844)
T 3j0a_A 381 PSIPDIFLSGNKLVTL-PKI---NLTANLIHLSENRLENLDI-LYFLLRVPHLQILILNQNRFSSCSGDQTP-------- 447 (844)
T ss_dssp CSCSEEEEESCCCCCC-CCC---CTTCCEEECCSCCCCSSTT-HHHHTTCTTCCEEEEESCCCCCCCSSSSS--------
T ss_pred CCcchhccCCCCcccc-ccc---ccccceeecccCccccCch-hhhhhcCCccceeeCCCCccccccccccc--------
Confidence 8889999999988854 332 4678889999998887532 12234678899999999988754331100
Q ss_pred ccccccccccccccCCCCCccceeeeEeeecccccccccccccccEEEccccccc-----ccCchhcccccccceeeccC
Q 047985 639 VNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFD-----GEIPTSISNLKGLQILSLAD 713 (930)
Q Consensus 639 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-----g~ip~~l~~l~~L~~L~Ls~ 713 (930)
...+.|+.|+|++|.++ +..|..|..+++|+.|+|++
T Consensus 448 --------------------------------------~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~ 489 (844)
T 3j0a_A 448 --------------------------------------SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489 (844)
T ss_dssp --------------------------------------CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCH
T ss_pred --------------------------------------ccCCccccccCCCCccccccccccchhhhcCcccccEEECCC
Confidence 01356899999999997 45567789999999999999
Q ss_pred ccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccccCCCCCCcCccCCcccCCCCCCCCCCC
Q 047985 714 NSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRPL 793 (930)
Q Consensus 714 N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g~iP~~~~~~~~~~~s~~gn~~Lcg~~l 793 (930)
|++++.+|..|+++++|+.|||++|++++..|..+. ++|++||+++|+|+|.+|.. |..+....+.|||..|.+++
T Consensus 490 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 490 NYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp HHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSC
T ss_pred CcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccccccc
Confidence 999999999999999999999999999988777766 89999999999999999964 55666667889999998765
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-47 Score=455.44 Aligned_cols=495 Identities=21% Similarity=0.259 Sum_probs=277.0
Q ss_pred CCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCC
Q 047985 120 SLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSS 199 (930)
Q Consensus 120 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 199 (930)
++++|+|++|.+++..+..+.++++|++|++++|.+. .-.+..+.++++|++|++++|.+++..|..|+++++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-------~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-------TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-------EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-------ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence 3444555555444444444444444444444444210 000112222333333333333344444455556666
Q ss_pred CCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCC-chhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCC----CE
Q 047985 200 LTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSD-ELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASL----EQ 274 (930)
Q Consensus 200 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L----~~ 274 (930)
|++|++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+++..|..++.+++| +.
T Consensus 102 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~ 181 (570)
T 2z63_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181 (570)
T ss_dssp CCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCE
T ss_pred cccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhh
Confidence 6666666666654444345555566666666555554 245555555555555555555554444445444444 45
Q ss_pred EEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCC
Q 047985 275 VDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNF 354 (930)
Q Consensus 275 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 354 (930)
|++++|.+.+..|..+... +|+.|++++|.... ..++..+..++.++.+.+....+
T Consensus 182 L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~-----------------------~~~~~~~~~l~~l~~~~l~~~~~ 237 (570)
T 2z63_A 182 LDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSL-----------------------NVMKTCIQGLAGLEVHRLVLGEF 237 (570)
T ss_dssp EECTTCCCCEECTTTTTTC-EEEEEEEESCCSCT-----------------------THHHHHHHTTTTCEEEEEEEEEC
T ss_pred cccCCCCceecCHHHhccC-cceeEecccccccc-----------------------cchhhhhcCccccceeeeccccc
Confidence 5555555554444444333 45555554443221 11223333344444333322211
Q ss_pred CCC-----CchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccC-CCC-CcchhhhcCCCcCEEeCCCCC
Q 047985 355 SGK-----MDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSC-DLT-EIPKFLKNQHHLELLDLASNK 427 (930)
Q Consensus 355 ~~~-----~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~-~l~-~ip~~l~~~~~L~~L~Ls~N~ 427 (930)
... ++...+ ..+.. ..++.+++..+ .+. .+|..+..+++|+.|++++|.
T Consensus 238 ~~~~~l~~~~~~~~-~~l~~-----------------------l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 293 (570)
T 2z63_A 238 RNEGNLEKFDKSAL-EGLCN-----------------------LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293 (570)
T ss_dssp CCCSSCEECCTTTT-GGGGG-----------------------SEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE
T ss_pred cCchhhhhcchhhh-ccccc-----------------------cchhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc
Confidence 110 000000 00110 11222223222 111 334455555666666666665
Q ss_pred CcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceeecccccccCcCccccc
Q 047985 428 INGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLG 507 (930)
Q Consensus 428 l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~ 507 (930)
+. .+|.++. .+ + |+.|++++|.+. .+|. .
T Consensus 294 l~-~l~~~~~--~~-~--------------------------------------------L~~L~l~~n~~~-~l~~--~ 322 (570)
T 2z63_A 294 IE-RVKDFSY--NF-G--------------------------------------------WQHLELVNCKFG-QFPT--L 322 (570)
T ss_dssp EC-SCCBCCS--CC-C--------------------------------------------CSEEEEESCBCS-SCCB--C
T ss_pred ch-hhhhhhc--cC-C--------------------------------------------ccEEeeccCccc-ccCc--c
Confidence 54 3444433 22 3 444444444444 2222 1
Q ss_pred ccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccC--CccccCCCCCcEecccCccccccCcccccCCCCC
Q 047985 508 NFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRI--PRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDL 585 (930)
Q Consensus 508 ~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 585 (930)
.++. |+.|++++|.+.+..+. ..+++|++|++++|++++.. |..+.++++|++|++++|++++..+. +..+++|
T Consensus 323 ~l~~-L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L 398 (570)
T 2z63_A 323 KLKS-LKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQL 398 (570)
T ss_dssp BCSS-CCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTC
T ss_pred cccc-cCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCC
Confidence 2332 55555555555444333 44555666666666665443 55666677777777777777665444 6677777
Q ss_pred cEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccccccccccccCCCCCccceeeeE
Q 047985 586 NVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLT 665 (930)
Q Consensus 586 ~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (930)
++|++++|++.+..+.. .+..+++|++|++++|.+++..|.. +.
T Consensus 399 ~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~-~~---------------------------------- 442 (570)
T 2z63_A 399 EHLDFQHSNLKQMSEFS-VFLSLRNLIYLDISHTHTRVAFNGI-FN---------------------------------- 442 (570)
T ss_dssp CEEECTTSEEESCTTSC-TTTTCTTCCEEECTTSCCEECCTTT-TT----------------------------------
T ss_pred CEEEccCCccccccchh-hhhcCCCCCEEeCcCCcccccchhh-hh----------------------------------
Confidence 77777777776654421 2256777888888888777655422 11
Q ss_pred eeecccccccccccccccEEEccccccc-ccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccC
Q 047985 666 MSNKGQMMSYKKIPDILTAVILSSNRFD-GEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQI 744 (930)
Q Consensus 666 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~i 744 (930)
.++.|+.|+|++|.++ +.+|..++.+++|+.|+|++|++++.+|..|+++++|+.|+|++|++++.+
T Consensus 443 ------------~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 510 (570)
T 2z63_A 443 ------------GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP 510 (570)
T ss_dssp ------------TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred ------------cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCC
Confidence 1345788888888887 678899999999999999999999999999999999999999999999998
Q ss_pred CccccCCCCCCeeecCCCcccccCCCCC
Q 047985 745 PQQLVELTFLEFFNVSDNHFTGPIPQGK 772 (930)
Q Consensus 745 p~~l~~L~~L~~L~ls~N~L~g~iP~~~ 772 (930)
|..+..+++|+.|++++|+++|.+|...
T Consensus 511 ~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 511 DGIFDRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred HHHhhcccCCcEEEecCCcccCCCcchH
Confidence 8889999999999999999999998653
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.6e-46 Score=445.76 Aligned_cols=501 Identities=20% Similarity=0.212 Sum_probs=307.5
Q ss_pred CCcccceEecCCCCcEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCcc
Q 047985 55 CCSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQ 134 (930)
Q Consensus 55 ~C~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~ 134 (930)
.|.|.|+ |+. +++.++ .++. .+ .++|++|+|++|.+++. .|..++++++|++|+|++|.+++.
T Consensus 3 ~C~~~~~-c~~----------~~~~l~-~ip~--~~--~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~ 65 (549)
T 2z81_A 3 SCDASGV-CDG----------RSRSFT-SIPS--GL--TAAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTI 65 (549)
T ss_dssp EECTTSE-EEC----------TTSCCS-SCCS--CC--CTTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEE
T ss_pred cCCCCce-EEC----------CCCccc-cccc--cC--CCCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCcc
Confidence 4999999 854 344444 2333 33 27899999999998865 567789999999999999999988
Q ss_pred CCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCC-CCchhccCCCCCCEEEccCCCCCCC
Q 047985 135 IPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISS-PIPHNLTYLSSLTTLSLSGCDLRGR 213 (930)
Q Consensus 135 ~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~ 213 (930)
.|..++++++|++|++++|.+. ...+..+.++++|++|++++|.+++ ..|..++++++|++|++++|.+.+.
T Consensus 66 ~~~~~~~l~~L~~L~Ls~n~l~-------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 138 (549)
T 2z81_A 66 EGDAFYSLGSLEHLDLSDNHLS-------SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE 138 (549)
T ss_dssp CTTTTTTCTTCCEEECTTSCCC-------SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred ChhhccccccCCEEECCCCccC-------ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccc
Confidence 8888889999999999988542 2234456777777777777777765 3456677777777777777764333
Q ss_pred Cc-ccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchh-hcCCCCCCEEEccCCCCCCCC--C-C
Q 047985 214 IP-SSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNS-IGNLASLEQVDLSLNRFLGKV--P-S 288 (930)
Q Consensus 214 ~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~--p-~ 288 (930)
+| ..+.++++|++|++++|.+++..|..++.+++|++|+++.|.+. .+|.. +..+++|++|++++|++++.. | .
T Consensus 139 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 217 (549)
T 2z81_A 139 IRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLP 217 (549)
T ss_dssp ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCS
T ss_pred cCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccc
Confidence 33 46677777777777777777666777777777777777777665 33433 345667777777777666531 1 1
Q ss_pred CCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccc
Q 047985 289 SLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHK 368 (930)
Q Consensus 289 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 368 (930)
....+++|+.|++++|.+++..+.. ++..+..+++|+.+++++|.+.+.......
T Consensus 218 ~~~~~~~L~~L~l~~n~l~~~~~~~--------------------l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~----- 272 (549)
T 2z81_A 218 VDEVSSPMKKLAFRGSVLTDESFNE--------------------LLKLLRYILELSEVEFDDCTLNGLGDFNPS----- 272 (549)
T ss_dssp SCCCCCCCCEEEEESCEEEHHHHHH--------------------HHGGGGGCTTCCEEEEESCEEECCSCCCCC-----
T ss_pred hhhhhhcccceeccccccchhHHHH--------------------HHHHhhhhcccccccccccccccccccccc-----
Confidence 1223445555555555544322211 112233445555555555554432110000
Q ss_pred cccEEEccCCcccccccccCCCCccccceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEe
Q 047985 369 LLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLN 448 (930)
Q Consensus 369 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~ 448 (930)
....+..+++|+.|++.++.+... .. .
T Consensus 273 ---------------------------------------~~~~~~~l~~L~~L~l~~~~i~~~----~~---~------- 299 (549)
T 2z81_A 273 ---------------------------------------ESDVVSELGKVETVTIRRLHIPQF----YL---F------- 299 (549)
T ss_dssp ---------------------------------------TTTCCCCCTTCCEEEEESCBCSCG----GG---S-------
T ss_pred ---------------------------------------chhhhhhhcccccccccccccchh----hh---c-------
Confidence 000112334555555555543211 00 0
Q ss_pred ccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceeecccccccCcCcccc-cccccCCceeecCCCcccccc
Q 047985 449 LSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCL-GNFSDWLSILDLQHNKFSGTI 527 (930)
Q Consensus 449 Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l-~~~~~~L~~L~Ls~N~l~~~~ 527 (930)
..++...... .+|+.|++++|.+. .+|..+ ..+++ |++|++++|++++.+
T Consensus 300 --------------------------~~l~~~~~~~-~~L~~L~l~~n~l~-~ip~~~~~~l~~-L~~L~Ls~N~l~~~~ 350 (549)
T 2z81_A 300 --------------------------YDLSTVYSLL-EKVKRITVENSKVF-LVPCSFSQHLKS-LEFLDLSENLMVEEY 350 (549)
T ss_dssp --------------------------CCCCHHHHHS-TTCCEEEEESSCCC-CCCHHHHHHCTT-CCEEECCSSCCCHHH
T ss_pred --------------------------ccchhhhhhc-ccceEEEeccCccc-cCCHHHHhcCcc-ccEEEccCCcccccc
Confidence 0111111111 44555555555554 344333 23443 666666666665544
Q ss_pred C---cccCCCCCccEEEccCccccccCC--ccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCC
Q 047985 528 P---DNLLKGNILKVIDLSDNLLQGRIP--RSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREP 602 (930)
Q Consensus 528 p---~~~~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 602 (930)
| ..+..+++|++|++++|++++..+ ..+..+++|++|++++|+++. +|..+..+++|++|+|++|++++.. ..
T Consensus 351 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~l~~l~-~~ 428 (549)
T 2z81_A 351 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIRVVK-TC 428 (549)
T ss_dssp HHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECTTSCCSCCC-TT
T ss_pred ccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhhcccccccEEECCCCCccccc-ch
Confidence 3 235556677777777777765432 457778888888888888874 5777788888888888888876432 11
Q ss_pred CccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccccccccccccCCCCCccceeeeEeeecccccccccccccc
Q 047985 603 KTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDIL 682 (930)
Q Consensus 603 ~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 682 (930)
..++|++||++
T Consensus 429 ----~~~~L~~L~Ls----------------------------------------------------------------- 439 (549)
T 2z81_A 429 ----IPQTLEVLDVS----------------------------------------------------------------- 439 (549)
T ss_dssp ----SCTTCSEEECC-----------------------------------------------------------------
T ss_pred ----hcCCceEEECC-----------------------------------------------------------------
Confidence 12344444444
Q ss_pred cEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCC
Q 047985 683 TAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDN 762 (930)
Q Consensus 683 ~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N 762 (930)
+|++++.+ +.+++|+.|+|++|+++ .||. .+.+++|++|||++|++++.+|..+..+++|++|++++|
T Consensus 440 ------~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 507 (549)
T 2z81_A 440 ------NNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507 (549)
T ss_dssp ------SSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred ------CCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCC
Confidence 44444332 34567777777777776 5665 466777888888888888777777777888888888888
Q ss_pred cccccCCC
Q 047985 763 HFTGPIPQ 770 (930)
Q Consensus 763 ~L~g~iP~ 770 (930)
++.|.+|.
T Consensus 508 ~~~~~~~~ 515 (549)
T 2z81_A 508 PWDCSCPR 515 (549)
T ss_dssp CBCCCHHH
T ss_pred CccCCCcc
Confidence 88777763
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=9.6e-47 Score=447.55 Aligned_cols=490 Identities=20% Similarity=0.238 Sum_probs=295.3
Q ss_pred CEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCC
Q 047985 97 EWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNL 176 (930)
Q Consensus 97 ~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L 176 (930)
.+.|++++.++. +|..+. ++|++|+|++|.+++..|..++++++|++|++++|.
T Consensus 8 ~~c~~~~~~l~~--ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~---------------------- 61 (549)
T 2z81_A 8 GVCDGRSRSFTS--IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR---------------------- 61 (549)
T ss_dssp SEEECTTSCCSS--CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC----------------------
T ss_pred ceEECCCCcccc--ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCC----------------------
Confidence 345666666653 555443 667777777777776666666666666666666663
Q ss_pred CEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCC-chhhhhcCCCCCCEEEccC
Q 047985 177 KELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSD-ELPTFIGTLGSLKELDLLQ 255 (930)
Q Consensus 177 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~ 255 (930)
+++..|..++++++|++|++++|.+++..|..++++++|++|++++|.+++ ..|..++++++|++|++++
T Consensus 62 ---------i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~ 132 (549)
T 2z81_A 62 ---------INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132 (549)
T ss_dssp ---------CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEE
T ss_pred ---------cCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCC
Confidence 223333444444555555555555544444444555555555555555443 1333444555555555555
Q ss_pred CCCCCCcc-hhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCC
Q 047985 256 NNLSGELP-NSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQI 334 (930)
Q Consensus 256 n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 334 (930)
|.+.+.+| ..|+++++|++|++++|++++..|..+..+++|++|+++.|.+.......+..+++|++|++++|++++..
T Consensus 133 n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 212 (549)
T 2z81_A 133 VETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQ 212 (549)
T ss_dssp SSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCC
T ss_pred CccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccccc
Confidence 54333332 34555555555555555555555555555555555555555543221112233455555555555554421
Q ss_pred --c-ccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcchh
Q 047985 335 --P-SSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKF 411 (930)
Q Consensus 335 --p-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~ 411 (930)
| .....+++|+.|++++|.+++..+. .++..
T Consensus 213 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~----------------------------------------------~l~~~ 246 (549)
T 2z81_A 213 FSPLPVDEVSSPMKKLAFRGSVLTDESFN----------------------------------------------ELLKL 246 (549)
T ss_dssp CCCCSSCCCCCCCCEEEEESCEEEHHHHH----------------------------------------------HHHGG
T ss_pred ccccchhhhhhcccceeccccccchhHHH----------------------------------------------HHHHH
Confidence 1 1112344455555544444322111 12233
Q ss_pred hhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhccccccee
Q 047985 412 LKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESL 491 (930)
Q Consensus 412 l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L 491 (930)
+..+++|+.+++++|.+.+....... . . ..+..+ .+|+.|
T Consensus 247 ~~~~~~L~~l~l~~~~~~~~~~~~~~--~-------------~------------------------~~~~~l-~~L~~L 286 (549)
T 2z81_A 247 LRYILELSEVEFDDCTLNGLGDFNPS--E-------------S------------------------DVVSEL-GKVETV 286 (549)
T ss_dssp GGGCTTCCEEEEESCEEECCSCCCCC--T-------------T------------------------TCCCCC-TTCCEE
T ss_pred hhhhcccccccccccccccccccccc--c-------------h------------------------hhhhhh-cccccc
Confidence 44566677777777766542110000 0 0 000111 445555
Q ss_pred ecccccccCc-----CcccccccccCCceeecCCCccccccCccc-CCCCCccEEEccCccccccCCc---cccCCCCCc
Q 047985 492 DLSYNNLSGL-----LPQCLGNFSDWLSILDLQHNKFSGTIPDNL-LKGNILKVIDLSDNLLQGRIPR---SLANCSNLE 562 (930)
Q Consensus 492 ~Ls~N~l~~~-----~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~ 562 (930)
++.++.+... ++..+.... .|+.|++++|++. .+|..+ ..+++|++|++++|++++.+|. .+..+++|+
T Consensus 287 ~l~~~~i~~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~ 364 (549)
T 2z81_A 287 TIRRLHIPQFYLFYDLSTVYSLLE-KVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364 (549)
T ss_dssp EEESCBCSCGGGSCCCCHHHHHST-TCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCC
T ss_pred cccccccchhhhcccchhhhhhcc-cceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCc
Confidence 5555544321 122223334 4999999999997 777766 4789999999999999987753 478899999
Q ss_pred EecccCccccccCc--ccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceecc
Q 047985 563 FLDLGDNQIRDIFP--SWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVN 640 (930)
Q Consensus 563 ~L~Ls~N~l~~~~p--~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~ 640 (930)
+|++++|++++..+ ..+..+++|++|+|++|++++ +|..+ ..+++|++|++++|.++
T Consensus 365 ~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~--~~~~~L~~L~Ls~N~l~------------------ 423 (549)
T 2z81_A 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSC--QWPEKMRFLNLSSTGIR------------------ 423 (549)
T ss_dssp EEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCC--CCCTTCCEEECTTSCCS------------------
T ss_pred EEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhh--cccccccEEECCCCCcc------------------
Confidence 99999999998754 568899999999999999985 34333 45666777777777654
Q ss_pred ccccccccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCccccccC
Q 047985 641 ASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHI 720 (930)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 720 (930)
.+|..+ .++|+.|+|++|++++.+
T Consensus 424 ------------------------------------------------------~l~~~~--~~~L~~L~Ls~N~l~~~~ 447 (549)
T 2z81_A 424 ------------------------------------------------------VVKTCI--PQTLEVLDVSNNNLDSFS 447 (549)
T ss_dssp ------------------------------------------------------CCCTTS--CTTCSEEECCSSCCSCCC
T ss_pred ------------------------------------------------------cccchh--cCCceEEECCCCChhhhc
Confidence 122222 157999999999999753
Q ss_pred cccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccccCCCC-CCcCccCCcccCCCCCCCCCC
Q 047985 721 PSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQG-KQFATFDKTSFDGNSGLCGRP 792 (930)
Q Consensus 721 p~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g~iP~~-~~~~~~~~~s~~gn~~Lcg~~ 792 (930)
+.+++|+.|||++|+++ .||. ...+++|++||+++|++++.+|.. ..+.........||+..|.+|
T Consensus 448 ----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 448 ----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp ----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 57899999999999999 7887 478999999999999999988753 344445555677887776543
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.7e-46 Score=444.69 Aligned_cols=491 Identities=20% Similarity=0.230 Sum_probs=332.9
Q ss_pred EEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCC
Q 047985 179 LVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNL 258 (930)
Q Consensus 179 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l 258 (930)
|++++|.+++..+..|.++++|++|++++|++++..+..|+++++|++|++++|.+++..|..|+++++|++|++++|.+
T Consensus 33 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 112 (570)
T 2z63_A 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112 (570)
T ss_dssp EECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccccc
Confidence 33333344444444555556666666666655555555555666666666666666555555566666666666666665
Q ss_pred CCCcchhhcCCCCCCEEEccCCCCCC-CCCCCCCCCcCCcEEEccCCCCCCccCccccccccc----ceeecccccccCC
Q 047985 259 SGELPNSIGNLASLEQVDLSLNRFLG-KVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSL----RTLDVYECKFSGQ 333 (930)
Q Consensus 259 ~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L----~~L~L~~n~l~~~ 333 (930)
++..+..++++++|++|++++|.+++ .+|..|+++++|++|++++|.+++..+..++.+++| ++|++++|.+.+.
T Consensus 113 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~ 192 (570)
T 2z63_A 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192 (570)
T ss_dssp CCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE
T ss_pred ccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceec
Confidence 54433345566666666666666554 345556666666666666666665555555555555 5666666666655
Q ss_pred CcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcchhhh
Q 047985 334 IPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLK 413 (930)
Q Consensus 334 ~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~ 413 (930)
.|..+..+ +|+.|++++|..... .++..+.
T Consensus 193 ~~~~~~~~-~L~~L~l~~n~~~~~-------------------------------------------------~~~~~~~ 222 (570)
T 2z63_A 193 QPGAFKEI-RLHKLTLRNNFDSLN-------------------------------------------------VMKTCIQ 222 (570)
T ss_dssp CTTTTTTC-EEEEEEEESCCSCTT-------------------------------------------------HHHHHHH
T ss_pred CHHHhccC-cceeEeccccccccc-------------------------------------------------chhhhhc
Confidence 55444433 566666655533221 1122222
Q ss_pred cCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccC-cCCCCCchHHhhcccccceee
Q 047985 414 NQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNN-SLTGEIPSWICNLSNRLESLD 492 (930)
Q Consensus 414 ~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n-~l~g~ip~~~~~~~~~L~~L~ 492 (930)
.++.++.+++....+.. ...++ .+....+.+.... .++.++++.+ .+.+.+|..+..+ ++|+.|+
T Consensus 223 ~l~~l~~~~l~~~~~~~----------~~~l~--~~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~~~~~l-~~L~~L~ 288 (570)
T 2z63_A 223 GLAGLEVHRLVLGEFRN----------EGNLE--KFDKSALEGLCNL-TIEEFRLAYLDYYLDDIIDLFNCL-TNVSSFS 288 (570)
T ss_dssp TTTTCEEEEEEEEECCC----------CSSCE--ECCTTTTGGGGGS-EEEEEEEEETTEEESCSTTTTGGG-TTCSEEE
T ss_pred CccccceeeeccccccC----------chhhh--hcchhhhcccccc-chhhhhhhcchhhhhhchhhhcCc-CcccEEE
Confidence 33333332222111110 00000 0000111111000 1334455555 5666778878777 8999999
Q ss_pred cccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEecccCcccc
Q 047985 493 LSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIR 572 (930)
Q Consensus 493 Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 572 (930)
+++|.++ .+|..+..+ . |++|++++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|+++
T Consensus 289 l~~~~l~-~l~~~~~~~-~-L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~ 360 (570)
T 2z63_A 289 LVSVTIE-RVKDFSYNF-G-WQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLS 360 (570)
T ss_dssp EESCEEC-SCCBCCSCC-C-CSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCB
T ss_pred ecCccch-hhhhhhccC-C-ccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccC
Confidence 9999998 578888877 5 999999999998 6665 4678999999999999887765 78999999999999999
Q ss_pred ccC--cccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceecccccccccccc
Q 047985 573 DIF--PSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEV 650 (930)
Q Consensus 573 ~~~--p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~ 650 (930)
+.. |..+..+++|++|++++|++.+..+. +..+++|+.|++++|.+++..|...+..
T Consensus 361 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~------------------ 419 (570)
T 2z63_A 361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSN---FLGLEQLEHLDFQHSNLKQMSEFSVFLS------------------ 419 (570)
T ss_dssp EEEEEEHHHHTCSCCCEEECCSCSEEEEEEE---EETCTTCCEEECTTSEEESCTTSCTTTT------------------
T ss_pred ccccccccccccCccCEEECCCCcccccccc---ccccCCCCEEEccCCccccccchhhhhc------------------
Confidence 875 78889999999999999999987554 3678999999999999987655322211
Q ss_pred ccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCcccc-ccCcccccccCC
Q 047985 651 IPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLH-GHIPSCLGNLTD 729 (930)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~-g~ip~~l~~L~~ 729 (930)
.+.|+.|++++|.+++.+|..++.+++|+.|+|++|.++ +.+|..++.+++
T Consensus 420 ----------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~ 471 (570)
T 2z63_A 420 ----------------------------LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471 (570)
T ss_dssp ----------------------------CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ----------------------------CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence 355899999999999999999999999999999999998 689999999999
Q ss_pred CCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccccCCCC-CCcCccCCcccCCCCCCCC
Q 047985 730 LESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQG-KQFATFDKTSFDGNSGLCG 790 (930)
Q Consensus 730 L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g~iP~~-~~~~~~~~~s~~gn~~Lcg 790 (930)
|+.|||++|++++.+|..+..+++|++|++++|++++.+|.. ..+.......+.+|+.-|.
T Consensus 472 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 999999999999999999999999999999999999877753 2334444445566655443
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=9.6e-47 Score=453.19 Aligned_cols=361 Identities=22% Similarity=0.327 Sum_probs=231.2
Q ss_pred CCCCCCCCCCCCCCcCCcEEEccCCCCCCc-----------------cCcccc--cccccceeecccccccCCCcccccC
Q 047985 280 NRFLGKVPSSLGNLTQLHWLSLASNDFSGE-----------------LPASFG--NLRSLRTLDVYECKFSGQIPSSLSN 340 (930)
Q Consensus 280 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-----------------~p~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~ 340 (930)
|++++ +|..++++++|++|+|++|.+++. +|..++ ++++|++|++++|++.+.+|..+++
T Consensus 193 n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 193 NNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred CCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 44444 455555555555555555555543 555555 6666666666666666666666666
Q ss_pred CCCCCEEEccCCC-CCC-CCchhHHh----hccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcch--hh
Q 047985 341 LTHLSFLDFSLNN-FSG-KMDLDIFL----VNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPK--FL 412 (930)
Q Consensus 341 l~~L~~L~Ls~n~-l~~-~~~~~~~~----~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~--~l 412 (930)
+++|++|++++|+ ++| .+|..... ..+++|++|++++ |.++.+|. .+
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~-------------------------n~l~~ip~~~~l 326 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY-------------------------NNLKTFPVETSL 326 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS-------------------------SCCSSCCCHHHH
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC-------------------------CcCCccCchhhh
Confidence 6666666666665 555 44432210 0112222222222 22233444 55
Q ss_pred hcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceee
Q 047985 413 KNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLD 492 (930)
Q Consensus 413 ~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~ 492 (930)
+.+++|++|++++|++.|.+| .+. .+ ++|++|+
T Consensus 327 ~~l~~L~~L~L~~N~l~g~ip-~~~---------------------------------------------~l-~~L~~L~ 359 (636)
T 4eco_A 327 QKMKKLGMLECLYNQLEGKLP-AFG---------------------------------------------SE-IKLASLN 359 (636)
T ss_dssp TTCTTCCEEECCSCCCEEECC-CCE---------------------------------------------EE-EEESEEE
T ss_pred ccCCCCCEEeCcCCcCccchh-hhC---------------------------------------------CC-CCCCEEE
Confidence 566666666666666665555 322 22 4555566
Q ss_pred cccccccCcCcccccccccCCceeecCCCccccccCcccCCCC--CccEEEccCccccccCCcccc-------CCCCCcE
Q 047985 493 LSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGN--ILKVIDLSDNLLQGRIPRSLA-------NCSNLEF 563 (930)
Q Consensus 493 Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p~~l~-------~l~~L~~ 563 (930)
+++|+++ .+|..+..++..|++|++++|.++ .+|..+.... +|++|++++|++++.+|..|. .+++|++
T Consensus 360 L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~ 437 (636)
T 4eco_A 360 LAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437 (636)
T ss_dssp CCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEE
T ss_pred CCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCE
Confidence 6666555 555555555522666666666666 5555554433 566667777766666666666 6667777
Q ss_pred ecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCcc------CCCCCceEEECCCCcCcccCChHHHhhcccce
Q 047985 564 LDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTD------CGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMK 637 (930)
Q Consensus 564 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~------~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~ 637 (930)
|++++|+++...+..+..+++|++|+|++|+++. +|..... ..+++|+.|+|++|+++ .+|...+.
T Consensus 438 L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~------ 509 (636)
T 4eco_A 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLTE-IPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA------ 509 (636)
T ss_dssp EECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSB-CCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST------
T ss_pred EECcCCccCcCCHHHHccCCCCCEEECCCCCCCC-cCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh------
Confidence 7777777775544455567777777777777773 3332211 12238899999999988 67743210
Q ss_pred eccccccccccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeec------
Q 047985 638 VVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSL------ 711 (930)
Q Consensus 638 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~L------ 711 (930)
..++.|+.|+|++|++++ +|..++++++|+.|+|
T Consensus 510 ---------------------------------------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~l 549 (636)
T 4eco_A 510 ---------------------------------------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDA 549 (636)
T ss_dssp ---------------------------------------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCT
T ss_pred ---------------------------------------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCccc
Confidence 013458899999999997 8999999999999999
Q ss_pred cCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccc
Q 047985 712 ADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTG 766 (930)
Q Consensus 712 s~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g 766 (930)
++|++.+.+|..++++++|+.|||++|++ +.+|..+. ++|++||+++|++..
T Consensus 550 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 550 QGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred ccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 56889999999999999999999999999 78998876 799999999998763
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.3e-45 Score=447.90 Aligned_cols=74 Identities=18% Similarity=0.185 Sum_probs=49.6
Q ss_pred ccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcc
Q 047985 688 SSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHF 764 (930)
Q Consensus 688 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L 764 (930)
++|++.+.+|..|+++++|+.|+|++|++ +.||..+. ++|+.|||++|++...-+..+.....+..+.+++|++
T Consensus 790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 790 EGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred ccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCc
Confidence 34566667777777777777777777777 57777665 5777777777777665555555544555555666544
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-44 Score=426.12 Aligned_cols=456 Identities=20% Similarity=0.236 Sum_probs=284.0
Q ss_pred EEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCC
Q 047985 178 ELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNN 257 (930)
Q Consensus 178 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 257 (930)
+|++++|.++. +|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|+++++|++|+|++|.
T Consensus 4 ~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 4 LVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp EEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred eEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 45555555542 333333 455555555555554444445555555555555555554444455555555555555555
Q ss_pred CCCCcchhhcCCCCCCEEEccCCCCCC-CCCCCCCCCcCCcEEEccCCCCCCccCccccccccc--ceeecccccc--cC
Q 047985 258 LSGELPNSIGNLASLEQVDLSLNRFLG-KVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSL--RTLDVYECKF--SG 332 (930)
Q Consensus 258 l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L--~~L~L~~n~l--~~ 332 (930)
++ .+|.. .+++|++|+|++|++++ .+|..|+++++|++|++++|.+++ ..+..+++| ++|++++|.+ .+
T Consensus 81 l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 81 LV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp CC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred ee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccc
Confidence 44 33333 44455555555554444 234444444444455544444443 123333333 4444444444 33
Q ss_pred CCcccccCCC-CCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcchh
Q 047985 333 QIPSSLSNLT-HLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKF 411 (930)
Q Consensus 333 ~~p~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~ 411 (930)
..|..+..+. ....+++++|.+.+.++ +..
T Consensus 155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~-------------------------------------------------~~~ 185 (520)
T 2z7x_B 155 EDPEGLQDFNTESLHIVFPTNKEFHFIL-------------------------------------------------DVS 185 (520)
T ss_dssp CCTTTTTTCCEEEEEEECCSSSCCCCCC-------------------------------------------------CCC
T ss_pred cccccccccccceEEEEeccCcchhhhh-------------------------------------------------hhh
Confidence 3333333222 11122222222221111 112
Q ss_pred hhcCCCcCEEeCCCCC-------CcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhh-
Q 047985 412 LKNQHHLELLDLASNK-------INGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICN- 483 (930)
Q Consensus 412 l~~~~~L~~L~Ls~N~-------l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~- 483 (930)
+..+++|+.+++++|. +.+.+| .+. .+++|+.|+++ +|.+++..+..+..
T Consensus 186 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~--~l~~L~~L~l~-------------------~~~l~~~~~~~~~~~ 243 (520)
T 2z7x_B 186 VKTVANLELSNIKCVLEDNKCSYFLSILA-KLQ--TNPKLSNLTLN-------------------NIETTWNSFIRILQL 243 (520)
T ss_dssp CTTCSEEEECCEEECCSTTTTHHHHHHHH-GGG--GCTTCCEEEEE-------------------EEEEEHHHHHHHHHH
T ss_pred hhcccceeeccccccccccccceeecchh-hhc--cccchhhcccc-------------------ccccCHHHHHHHHHH
Confidence 3445566666666665 333333 222 34455555544 44444433322221
Q ss_pred --cccccceeecccccccCcCcccc-----cccccCCceeecCCCccccccC-cccCCC---CCccEEEccCccccccCC
Q 047985 484 --LSNRLESLDLSYNNLSGLLPQCL-----GNFSDWLSILDLQHNKFSGTIP-DNLLKG---NILKVIDLSDNLLQGRIP 552 (930)
Q Consensus 484 --~~~~L~~L~Ls~N~l~~~~p~~l-----~~~~~~L~~L~Ls~N~l~~~~p-~~~~~l---~~L~~L~Ls~N~l~~~~p 552 (930)
. ++|++|++++|+++|.+|..+ ..+.. |+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.+..
T Consensus 244 ~~~-~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~-L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~- 318 (520)
T 2z7x_B 244 VWH-TTVWYFSISNVKLQGQLDFRDFDYSGTSLKA-LSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML- 318 (520)
T ss_dssp HHT-SSCSEEEEEEEEEESCCCCCCCCCCSCCCCE-EEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC-
T ss_pred hhh-CcccEEEeecccccCccccchhhcccccCce-eEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc-
Confidence 2 578999999999988888887 77775 88999998888 555 334333 56899999999886542
Q ss_pred ccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhh
Q 047985 553 RSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQC 632 (930)
Q Consensus 553 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~ 632 (930)
.+..+++|++|++++|++++.+|.++..+++|++|+|++|++++....+..+..+++|++||+++|.+++.+|...+.
T Consensus 319 -~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~- 396 (520)
T 2z7x_B 319 -CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS- 396 (520)
T ss_dssp -CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC-
T ss_pred -chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc-
Confidence 126788899999999999998888899999999999999998863211122367889999999999998767643111
Q ss_pred cccceeccccccccccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeecc
Q 047985 633 WNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLA 712 (930)
Q Consensus 633 l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls 712 (930)
.++.|+.|++++|++++.+|..+. ++|+.|+|+
T Consensus 397 ---------------------------------------------~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls 429 (520)
T 2z7x_B 397 ---------------------------------------------WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLH 429 (520)
T ss_dssp ---------------------------------------------CCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECC
T ss_pred ---------------------------------------------cCccCCEEECcCCCCCcchhhhhc--ccCCEEECC
Confidence 134588999999999988888775 789999999
Q ss_pred CccccccCcccccccCCCCeeeCCCCcCcccCCcc-ccCCCCCCeeecCCCcccccCC
Q 047985 713 DNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQ-LVELTFLEFFNVSDNHFTGPIP 769 (930)
Q Consensus 713 ~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~-l~~L~~L~~L~ls~N~L~g~iP 769 (930)
+|+++ .+|..+..+++|++|||++|+++ .+|.. +..+++|++|++++|++++..|
T Consensus 430 ~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 430 SNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp SSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 99998 88988889999999999999999 56665 8899999999999999998665
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-44 Score=425.79 Aligned_cols=463 Identities=21% Similarity=0.195 Sum_probs=369.7
Q ss_pred cEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCc
Q 047985 146 AYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLI 225 (930)
Q Consensus 146 ~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 225 (930)
++||+++|.+. .+|..+. ++|++|++++|.+++..|..+.++++|++|++++|++++..|..|+++++|+
T Consensus 3 ~~l~ls~n~l~--------~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 72 (520)
T 2z7x_B 3 FLVDRSKNGLI--------HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72 (520)
T ss_dssp CEEECTTSCCS--------SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCC
T ss_pred ceEecCCCCcc--------ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCC
Confidence 57999999652 3444333 8999999999999999999999999999999999999988899999999999
Q ss_pred EEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCC-CcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCC--cEEEcc
Q 047985 226 HLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSG-ELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQL--HWLSLA 302 (930)
Q Consensus 226 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L--~~L~Ls 302 (930)
+|++++|.++ .+|.. .+++|++|++++|.+++ .+|..|+++++|++|++++|++++ ..+..+++| ++|+++
T Consensus 73 ~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~ 146 (520)
T 2z7x_B 73 YLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLV 146 (520)
T ss_dssp EEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEE
T ss_pred EEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEee
Confidence 9999999998 45655 89999999999999997 578999999999999999999986 357777888 999999
Q ss_pred CCCC--CCccCccccccc-ccceeecccccccCCCcc-cccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCC
Q 047985 303 SNDF--SGELPASFGNLR-SLRTLDVYECKFSGQIPS-SLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTN 378 (930)
Q Consensus 303 ~N~l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 378 (930)
+|.+ .+..|..+..+. +...+++++|.+.+.++. .+..+++|+.|++++|.-...... +
T Consensus 147 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~--------------- 209 (520)
T 2z7x_B 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY--F--------------- 209 (520)
T ss_dssp ECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHH--H---------------
T ss_pred cccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccce--e---------------
Confidence 9999 888888888766 455678889988876654 566788888888887752111100 0
Q ss_pred cccccccccCCCCccccceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccccC-CCCCCceEEeccCccCcCC
Q 047985 379 RLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLD-PSMQNFGHLNLSHNFLTGF 457 (930)
Q Consensus 379 ~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~-~~l~~L~~L~Ls~N~l~~~ 457 (930)
......+..+++|+.|++++|.+.+..+..+.. ...++|++|
T Consensus 210 ---------------------------~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L---------- 252 (520)
T 2z7x_B 210 ---------------------------LSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF---------- 252 (520)
T ss_dssp ---------------------------HHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE----------
T ss_pred ---------------------------ecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEE----------
Confidence 001124678899999999999887543322110 012345555
Q ss_pred CCCCCcceEEeccCcCCCCCchHH-----hhcccccceeecccccccCcCc-cccccc---ccCCceeecCCCccccccC
Q 047985 458 DQHPNTVNYLVSNNSLTGEIPSWI-----CNLSNRLESLDLSYNNLSGLLP-QCLGNF---SDWLSILDLQHNKFSGTIP 528 (930)
Q Consensus 458 ~~~~~l~~l~ls~n~l~g~ip~~~-----~~~~~~L~~L~Ls~N~l~~~~p-~~l~~~---~~~L~~L~Ls~N~l~~~~p 528 (930)
++++|+++|.+|..+ ..+ ++|+.+++++|.+ .+| ..+..+ . .|+.|++++|.+.+..
T Consensus 253 ---------~l~~n~l~~~~p~~~~~~~~~~l-~~L~~l~l~~n~~--~~p~~~~~~~~~~~-~L~~L~l~~n~l~~~~- 318 (520)
T 2z7x_B 253 ---------SISNVKLQGQLDFRDFDYSGTSL-KALSIHQVVSDVF--GFPQSYIYEIFSNM-NIKNFTVSGTRMVHML- 318 (520)
T ss_dssp ---------EEEEEEEESCCCCCCCCCCSCCC-CEEEEEEEEECCC--CSCTHHHHHHHHTC-CCSEEEEESSCCCCCC-
T ss_pred ---------EeecccccCccccchhhcccccC-ceeEeccccccce--ecchhhhhcccccC-ceeEEEcCCCcccccc-
Confidence 455555556677666 555 7899999999998 455 344433 3 3999999999886432
Q ss_pred cccCCCCCccEEEccCccccccCCccccCCCCCcEecccCccccc--cCcccccCCCCCcEEEccCCcccccCCCCCccC
Q 047985 529 DNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRD--IFPSWLGTLPDLNVLILKSNKFHGLIREPKTDC 606 (930)
Q Consensus 529 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~ 606 (930)
....+++|++|++++|++++.+|..+..+++|++|++++|++++ .+|..+..+++|++|+|++|++.+.+|... +.
T Consensus 319 -~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~-~~ 396 (520)
T 2z7x_B 319 -CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD-CS 396 (520)
T ss_dssp -CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS-CC
T ss_pred -chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch-hc
Confidence 12577899999999999999899999999999999999999997 567889999999999999999998555432 25
Q ss_pred CCCCceEEECCCCcCcccCChHHHhhcccceeccccccccccccccCCCCCccceeeeEeeecccccccccccccccEEE
Q 047985 607 GFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVI 686 (930)
Q Consensus 607 ~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 686 (930)
.+++|+.|++++|++++.+|.. +++.|+.||
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~~~-------------------------------------------------l~~~L~~L~ 427 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIFRC-------------------------------------------------LPPRIKVLD 427 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGGGS-------------------------------------------------CCTTCCEEE
T ss_pred cCccCCEEECcCCCCCcchhhh-------------------------------------------------hcccCCEEE
Confidence 6899999999999998766532 124589999
Q ss_pred cccccccccCchhcccccccceeeccCccccccCccc-ccccCCCCeeeCCCCcCcccCC
Q 047985 687 LSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSC-LGNLTDLESLDLSNNRFSGQIP 745 (930)
Q Consensus 687 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-l~~L~~L~~LdLs~N~lsg~ip 745 (930)
|++|+++ .+|..+..+++|+.|+|++|+++ .+|.. ++.+++|+.|+|++|++++..+
T Consensus 428 Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 428 LHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 9999999 89998999999999999999999 56665 9999999999999999998765
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.8e-42 Score=416.61 Aligned_cols=515 Identities=23% Similarity=0.237 Sum_probs=317.7
Q ss_pred CCCcEEEccCCCCCCCccccCCchh-hhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCC
Q 047985 143 SKLAYLDLSHNSYYDPVELRKPSLG-NLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNI 221 (930)
Q Consensus 143 ~~L~~L~Ls~n~~~~~~~~~~~~l~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 221 (930)
+++++|||++|.+ ..++ ..|.++++|++|+|++|.+++..+.+|.++++|++|+|++|++++..+..|.++
T Consensus 52 ~~~~~LdLs~N~i--------~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L 123 (635)
T 4g8a_A 52 FSTKNLDLSFNPL--------RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 123 (635)
T ss_dssp TTCCEEECTTSCC--------CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTC
T ss_pred cCCCEEEeeCCCC--------CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCC
Confidence 3678888888854 2222 346667777777777777666666666667777777777776665555566666
Q ss_pred CCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCC-CcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCc---
Q 047985 222 TRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSG-ELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLH--- 297 (930)
Q Consensus 222 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~--- 297 (930)
++|++|++++|++++..+..|+++++|++|++++|.+++ .+|..++.+++|++|++++|++++..+..+..+.+++
T Consensus 124 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~ 203 (635)
T 4g8a_A 124 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 203 (635)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhh
Confidence 677777777776666655566666666666666666654 3456666666666666666666666555555544332
Q ss_pred -EEEccCCCCCCccCcccccccccceeecccccccCC-CcccccCCCCCCEEEccCCCCCCCCchh----HHhhcccccc
Q 047985 298 -WLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQ-IPSSLSNLTHLSFLDFSLNNFSGKMDLD----IFLVNHKLLY 371 (930)
Q Consensus 298 -~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~~~~----~~~~~~~~L~ 371 (930)
.++++.|.+....+..+. ...++.+++.+|..... .+..+..+..++...+..+......... ..+.....+.
T Consensus 204 ~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~ 282 (635)
T 4g8a_A 204 LSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 282 (635)
T ss_dssp CEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSE
T ss_pred hhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchh
Confidence 456666666543333332 33455555555543322 1223444555554444332221110000 0001111121
Q ss_pred EEEccCCcccccccccCCCCccccceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccC
Q 047985 372 HLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSH 451 (930)
Q Consensus 372 ~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~ 451 (930)
...+..+... .....++..+....+++.+++.++.+....+.. ....++.|++++
T Consensus 283 ~~~l~~~~~~---------------------~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~----~~~~L~~L~l~~ 337 (635)
T 4g8a_A 283 IEEFRLAYLD---------------------YYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFS----YNFGWQHLELVN 337 (635)
T ss_dssp EEEEEEECCC---------------------SCEEECTTTTGGGTTCSEEEEESCEEEECGGGG----SCCCCSEEEEES
T ss_pred hhhhhhhhhc---------------------ccccchhhhhhhhcccccccccccccccccccc----cchhhhhhhccc
Confidence 1111111000 000122233444555666666666554322211 234455555555
Q ss_pred ccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceeecccccccCcCcccccccccCCceeecCCCcccc--ccCc
Q 047985 452 NFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSG--TIPD 529 (930)
Q Consensus 452 N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~--~~p~ 529 (930)
|.+..+.. . .+ ..|+.++++.|.+.... ....++. |+.|++++|.+.. ..+.
T Consensus 338 ~~~~~~~~-------------------~---~l-~~L~~l~l~~n~~~~~~--~~~~l~~-L~~L~ls~n~l~~~~~~~~ 391 (635)
T 4g8a_A 338 CKFGQFPT-------------------L---KL-KSLKRLTFTSNKGGNAF--SEVDLPS-LEFLDLSRNGLSFKGCCSQ 391 (635)
T ss_dssp CEESSCCC-------------------C---BC-TTCCEEEEESCCSCCBC--CCCBCTT-CCEEECCSSCCBEEEECCH
T ss_pred ccccCcCc-------------------c---cc-hhhhhcccccccCCCCc--ccccccc-cccchhhcccccccccccc
Confidence 54443221 1 11 45666666666655332 2334553 7777777776642 3445
Q ss_pred ccCCCCCccEEEccCccccccCCccccCCCCCcEecccCccccccCc-ccccCCCCCcEEEccCCcccccCCCCCccCCC
Q 047985 530 NLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFP-SWLGTLPDLNVLILKSNKFHGLIREPKTDCGF 608 (930)
Q Consensus 530 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l 608 (930)
.+..+.+|+++++..|.+.+. +..+..+++|+.++++.|+.....+ ..+..+++++.++++.|.+.+..+..+ ..+
T Consensus 392 ~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~--~~~ 468 (635)
T 4g8a_A 392 SDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGL 468 (635)
T ss_dssp HHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT--TTC
T ss_pred chhhhhhhhhhhccccccccc-cccccccccccchhhhhcccccccccccccccccccccccccccccccccccc--ccc
Confidence 555667777777777777643 4456777788888887776665544 446677888888888888877766554 567
Q ss_pred CCceEEECCCCcCcccCChHHHhhcccceeccccccccccccccCCCCCccceeeeEeeecccccccccccccccEEEcc
Q 047985 609 PKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILS 688 (930)
Q Consensus 609 ~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 688 (930)
+.|++|++++|.+.+.+++..+. .++.|+.|||+
T Consensus 469 ~~L~~L~Ls~N~~~~~~~~~~~~----------------------------------------------~l~~L~~L~Ls 502 (635)
T 4g8a_A 469 SSLEVLKMAGNSFQENFLPDIFT----------------------------------------------ELRNLTFLDLS 502 (635)
T ss_dssp TTCCEEECTTCEEGGGEECSCCT----------------------------------------------TCTTCCEEECT
T ss_pred hhhhhhhhhhcccccccCchhhh----------------------------------------------hccccCEEECC
Confidence 78888888888754332211111 13458899999
Q ss_pred cccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCC-CCCCeeecCCCcccc
Q 047985 689 SNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVEL-TFLEFFNVSDNHFTG 766 (930)
Q Consensus 689 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L-~~L~~L~ls~N~L~g 766 (930)
+|+|++.+|..|+++++|++|+|++|+|++.+|..|+++++|++|||++|+|++.+|..+..+ ++|++|++++|+++.
T Consensus 503 ~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 503 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999988 689999999999975
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.9e-42 Score=416.48 Aligned_cols=514 Identities=20% Similarity=0.181 Sum_probs=335.6
Q ss_pred CCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchh-hhhhCC
Q 047985 95 HLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLG-NLADKL 173 (930)
Q Consensus 95 ~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~-~~l~~l 173 (930)
++++|||++|.+++. .|..|.++++|++|||++|.+++..|..|.++++|++|+|++|++ ..++ ..+.++
T Consensus 53 ~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l--------~~l~~~~f~~L 123 (635)
T 4g8a_A 53 STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI--------QSLALGAFSGL 123 (635)
T ss_dssp TCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC--------CEECGGGGTTC
T ss_pred CCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC--------CCCCHHHhcCC
Confidence 677777777777653 344677777777777777777765566677777777777777753 2232 356677
Q ss_pred CCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCC-CCcccccCCCCCcEEEccCCCCCCchhhhhcCCCC----C
Q 047985 174 TNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRG-RIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGS----L 248 (930)
Q Consensus 174 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~----L 248 (930)
++|++|++++|.+++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|++++..+..+..+.+ +
T Consensus 124 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~ 203 (635)
T 4g8a_A 124 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 203 (635)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhh
Confidence 777777777777777666667777777777777777764 35666677777777777777777666665554433 3
Q ss_pred CEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCC-CCCCCCCCcCCcEEEccCCC------CCCccCcccccccccc
Q 047985 249 KELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGK-VPSSLGNLTQLHWLSLASND------FSGELPASFGNLRSLR 321 (930)
Q Consensus 249 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~N~------l~~~~p~~l~~l~~L~ 321 (930)
..++++.|.++...+ .......++.+++.+|..... .+..+..+..++...+..+. +.......+..+..+.
T Consensus 204 ~~~~ls~n~l~~i~~-~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~ 282 (635)
T 4g8a_A 204 LSLDLSLNPMNFIQP-GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 282 (635)
T ss_dssp CEEECTTCCCCEECT-TTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSE
T ss_pred hhhhcccCcccccCc-ccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchh
Confidence 356777777664333 333344556666666644322 12234444555544443222 1222223344444444
Q ss_pred eeecccccccC---CCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCcccccee
Q 047985 322 TLDVYECKFSG---QIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAV 398 (930)
Q Consensus 322 ~L~L~~n~l~~---~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L 398 (930)
..++..+.... .++..+..+.+++.+++..+.+....+. .....++.|++.+|.+..... .....++.+
T Consensus 283 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~----~~l~~L~~l 354 (635)
T 4g8a_A 283 IEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDF----SYNFGWQHLELVNCKFGQFPT----LKLKSLKRL 354 (635)
T ss_dssp EEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGG----GSCCCCSEEEEESCEESSCCC----CBCTTCCEE
T ss_pred hhhhhhhhhcccccchhhhhhhhccccccccccccccccccc----ccchhhhhhhcccccccCcCc----ccchhhhhc
Confidence 44444433221 1222334455566666665554432221 334556666666654432221 123445555
Q ss_pred eeccCCCCCcchhhhcCCCcCEEeCCCCCCcCC--CCccccCCCCCCceEEeccCccCcCC----CCCCCcceEEeccCc
Q 047985 399 SLCSCDLTEIPKFLKNQHHLELLDLASNKINGK--VPKWLLDPSMQNFGHLNLSHNFLTGF----DQHPNTVNYLVSNNS 472 (930)
Q Consensus 399 ~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~--~p~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~l~~l~ls~n~ 472 (930)
.+..+.....+. ...+++|+.+++++|.+... .+.... .+.+|+.+++..|..... ...+.++.++++.++
T Consensus 355 ~l~~n~~~~~~~-~~~l~~L~~L~ls~n~l~~~~~~~~~~~--~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~ 431 (635)
T 4g8a_A 355 TFTSNKGGNAFS-EVDLPSLEFLDLSRNGLSFKGCCSQSDF--GTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 431 (635)
T ss_dssp EEESCCSCCBCC-CCBCTTCCEEECCSSCCBEEEECCHHHH--SCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSE
T ss_pred ccccccCCCCcc-cccccccccchhhccccccccccccchh--hhhhhhhhhccccccccccccccccccccchhhhhcc
Confidence 665555543322 23566677777777766432 232222 456667777766654432 235667777777776
Q ss_pred CCCCCchHHhhcccccceeecccccccCcCcccccccccCCceeecCCCccc-cccCcccCCCCCccEEEccCccccccC
Q 047985 473 LTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFS-GTIPDNLLKGNILKVIDLSDNLLQGRI 551 (930)
Q Consensus 473 l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 551 (930)
.....+...+....+++.++++.|.+.+..|..+..++. |+.|++++|++. +.+|..+..+++|++|+|++|++++..
T Consensus 432 ~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~-L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~ 510 (635)
T 4g8a_A 432 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 510 (635)
T ss_dssp EESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT-CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred ccccccccccccccccccccccccccccccccccccchh-hhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcC
Confidence 665555443333388999999999999988888888885 999999999854 457888999999999999999999999
Q ss_pred CccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCC-CCceEEECCCCcCcccCChHHH
Q 047985 552 PRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGF-PKLRIIDLSKNRFTGKLPSMAF 630 (930)
Q Consensus 552 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l-~~L~~LdLs~N~l~g~ip~~~~ 630 (930)
|..|.++++|++|+|++|+|+++.|..|..+++|++|+|++|++++..|..+ ..+ ++|++|+|++|++++.....+|
T Consensus 511 ~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l--~~l~~~L~~L~L~~Np~~C~C~~~~~ 588 (635)
T 4g8a_A 511 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL--QHFPSSLAFLNLTQNDFACTCEHQSF 588 (635)
T ss_dssp TTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT--TCCCTTCCEEECTTCCBCCSGGGHHH
T ss_pred hHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH--HhhhCcCCEEEeeCCCCcccCCcHHH
Confidence 9999999999999999999999999999999999999999999999988766 455 6899999999999987665554
Q ss_pred hh
Q 047985 631 QC 632 (930)
Q Consensus 631 ~~ 632 (930)
..
T Consensus 589 ~~ 590 (635)
T 4g8a_A 589 LQ 590 (635)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.2e-43 Score=416.86 Aligned_cols=447 Identities=20% Similarity=0.232 Sum_probs=254.9
Q ss_pred CCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEc
Q 047985 198 SSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDL 277 (930)
Q Consensus 198 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 277 (930)
++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|+|++|.++ .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 45555555555555444445555555555555555555544555555555555555555554 34433 4555555555
Q ss_pred cCCCCCC-CCCCCCCCCcCCcEEEccCCCCCCccCccccccccc--ceeecccccc--cCCCcccccCCC--CCCEEEcc
Q 047985 278 SLNRFLG-KVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSL--RTLDVYECKF--SGQIPSSLSNLT--HLSFLDFS 350 (930)
Q Consensus 278 s~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L--~~L~L~~n~l--~~~~p~~l~~l~--~L~~L~Ls 350 (930)
++|++++ .+|..|+++++|++|++++|.+++. .+..+++| ++|++++|.+ ++..|..+..+. .+ .++++
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~ 204 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFH 204 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEEC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceE-EEEec
Confidence 5555544 2234555555555555555555432 22233333 5555555555 444554444432 12 33445
Q ss_pred CCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcC
Q 047985 351 LNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKING 430 (930)
Q Consensus 351 ~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~ 430 (930)
.|.+.+.++...+ ..+++|+.+++++|...... +...+..+..++.|+.++++++.+.+
T Consensus 205 ~n~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~--------------------l~~~~~~l~~l~~L~~L~L~~~~l~~ 263 (562)
T 3a79_B 205 PNSLFSVQVNMSV-NALGHLQLSNIKLNDENCQR--------------------LMTFLSELTRGPTLLNVTLQHIETTW 263 (562)
T ss_dssp SSSCCCCCCEEEE-SSEEEEEEEEEECCSTTHHH--------------------HHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred Cccchhhhhhhcc-cccceEEEecccccccccch--------------------HHHHHHHHhccCcceEEEecCCcCcH
Confidence 5555443332211 33444444444444210000 00111223333444444443332221
Q ss_pred CCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceeecccccccCcCcccc----
Q 047985 431 KVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCL---- 506 (930)
Q Consensus 431 ~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l---- 506 (930)
+.+. .++..+. . .+|++|++++|.++|.+|..+
T Consensus 264 ----------------------------------------~~~~-~~~~~~~-~-~~L~~L~l~~n~l~~~ip~~~~~~~ 300 (562)
T 3a79_B 264 ----------------------------------------KCSV-KLFQFFW-P-RPVEYLNIYNLTITERIDREEFTYS 300 (562)
T ss_dssp ----------------------------------------HHHH-HHHHHHT-T-SSEEEEEEEEEEECSCCCCCCCCCC
T ss_pred ----------------------------------------HHHH-HHHHhhh-c-ccccEEEEeccEeeccccchhhhcc
Confidence 1111 1111111 1 356666666666666666555
Q ss_pred -cccccCCceeecCCCccccccCc-ccC---CCCCccEEEccCccccccCCccccCCCCCcEecccCccccccCcccccC
Q 047985 507 -GNFSDWLSILDLQHNKFSGTIPD-NLL---KGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGT 581 (930)
Q Consensus 507 -~~~~~~L~~L~Ls~N~l~~~~p~-~~~---~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 581 (930)
..+.. |+.++++.|.+ .+|. .+. ...+|++|++++|.+.... ....+++|++|++++|++++.+|..+..
T Consensus 301 ~~~L~~-L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 375 (562)
T 3a79_B 301 ETALKS-LMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCST 375 (562)
T ss_dssp SCSCCE-EEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCS
T ss_pred cccchh-eehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcc
Confidence 44443 55555555554 3331 111 1245777777777765332 1256777888888888887777777777
Q ss_pred CCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccccccccccccCCCCCccce
Q 047985 582 LPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYD 661 (930)
Q Consensus 582 l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 661 (930)
+++|++|+|++|++++..+.+..+..+++|++|++++|.+++.+|...+.
T Consensus 376 l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~------------------------------ 425 (562)
T 3a79_B 376 LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA------------------------------ 425 (562)
T ss_dssp CSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC------------------------------
T ss_pred cCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc------------------------------
Confidence 88888888888877764322222356778888888888887666643211
Q ss_pred eeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCc
Q 047985 662 YSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFS 741 (930)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~ls 741 (930)
.++.|+.|+|++|++++.+|..+. ++|+.|+|++|+++ .+|..+.++++|+.|||++|+++
T Consensus 426 ----------------~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 426 ----------------WAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp ----------------CCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC
T ss_pred ----------------CcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC
Confidence 134578888888888888777665 68999999999998 78888889999999999999999
Q ss_pred ccCCcc-ccCCCCCCeeecCCCcccccCCC
Q 047985 742 GQIPQQ-LVELTFLEFFNVSDNHFTGPIPQ 770 (930)
Q Consensus 742 g~ip~~-l~~L~~L~~L~ls~N~L~g~iP~ 770 (930)
.+|.. +..+++|++|++++|++.+..|.
T Consensus 487 -~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 487 -SVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp -CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred -CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 56665 88899999999999999987764
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.4e-41 Score=398.71 Aligned_cols=465 Identities=20% Similarity=0.229 Sum_probs=269.3
Q ss_pred CCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCC
Q 047985 94 VHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKL 173 (930)
Q Consensus 94 ~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l 173 (930)
...+++|+++|.++. +|..+. ++|++|+|++|.+++..|..++++++|++|++++|
T Consensus 31 ~~~~~l~ls~~~L~~--ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-------------------- 86 (562)
T 3a79_B 31 ELESMVDYSNRNLTH--VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-------------------- 86 (562)
T ss_dssp --CCEEECTTSCCCS--CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC--------------------
T ss_pred CCCcEEEcCCCCCcc--CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCC--------------------
Confidence 334667777776663 455443 56666666666666555555555555555555555
Q ss_pred CCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCc-hhhhhcCCCCCCEEE
Q 047985 174 TNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDE-LPTFIGTLGSLKELD 252 (930)
Q Consensus 174 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~ 252 (930)
.+++..|..|.++++|++|++++|.++ .+|.. .+++|++|++++|.+++. +|..++++++|++|+
T Consensus 87 -----------~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~ 152 (562)
T 3a79_B 87 -----------RIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLG 152 (562)
T ss_dssp -----------CCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEE
T ss_pred -----------CCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEe
Confidence 344445566667777777777777776 34444 566677777777766652 345666666666666
Q ss_pred ccCCCCCCCcchhhcCCCCC--CEEEccCCCC--CCCCCCCCCCCc--CCcEEEccCCCCCCccCc-ccccccccceeec
Q 047985 253 LLQNNLSGELPNSIGNLASL--EQVDLSLNRF--LGKVPSSLGNLT--QLHWLSLASNDFSGELPA-SFGNLRSLRTLDV 325 (930)
Q Consensus 253 L~~n~l~~~~p~~l~~l~~L--~~L~Ls~n~l--~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~L 325 (930)
+++|.+++. .+..+++| ++|++++|++ ++..|..+..+. .| .+++++|.+.+.++. .+..+++|+.|++
T Consensus 153 L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l 228 (562)
T 3a79_B 153 LSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNI 228 (562)
T ss_dssp EECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEE
T ss_pred cCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecc
Confidence 666666542 23333333 6666666666 555555554433 22 345555555543332 2344555555555
Q ss_pred ccccc-----cCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeee
Q 047985 326 YECKF-----SGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSL 400 (930)
Q Consensus 326 ~~n~l-----~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l 400 (930)
++|+. .+. +..+..+++|+.|++.++.+.+
T Consensus 229 ~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~~~l~~-------------------------------------------- 263 (562)
T 3a79_B 229 KLNDENCQRLMTF-LSELTRGPTLLNVTLQHIETTW-------------------------------------------- 263 (562)
T ss_dssp ECCSTTHHHHHHH-HHHHHSCSSCEEEEEEEEEECH--------------------------------------------
T ss_pred cccccccchHHHH-HHHHhccCcceEEEecCCcCcH--------------------------------------------
Confidence 55531 111 1123333444444443333221
Q ss_pred ccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCch-
Q 047985 401 CSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPS- 479 (930)
Q Consensus 401 ~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~- 479 (930)
+.+..++..+ ..++|++|++++|.+.|.+|..+......+|+.|.+.++ ..+.+ .+|.
T Consensus 264 --~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~----------------~~~~~--~~p~~ 322 (562)
T 3a79_B 264 --KCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV----------------KNQVF--LFSKE 322 (562)
T ss_dssp --HHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEE----------------EECCC--SSCHH
T ss_pred --HHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhc----------------cccee--ecChh
Confidence 1111222222 234788999999998888888764212233333332221 22222 2331
Q ss_pred HHhhcc--cccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccC
Q 047985 480 WICNLS--NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLAN 557 (930)
Q Consensus 480 ~~~~~~--~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 557 (930)
.+.... .+|+.|++++|.+.... + ...+++|++|++++|++++.+|..+.+
T Consensus 323 ~~~~~~~~~~L~~L~l~~n~~~~~~---~------------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~ 375 (562)
T 3a79_B 323 ALYSVFAEMNIKMLSISDTPFIHMV---C------------------------PPSPSSFTFLNFTQNVFTDSVFQGCST 375 (562)
T ss_dssp HHHHHHHTCCCSEEEEESSCCCCCC---C------------------------CSSCCCCCEEECCSSCCCTTTTTTCCS
T ss_pred hhhhhhccCcceEEEccCCCccccc---C------------------------ccCCCCceEEECCCCccccchhhhhcc
Confidence 222110 23555555555543211 0 133455555555555555555555666
Q ss_pred CCCCcEecccCcccccc--CcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhccc
Q 047985 558 CSNLEFLDLGDNQIRDI--FPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNA 635 (930)
Q Consensus 558 l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~ 635 (930)
+++|++|++++|++++. +|..+..+++|++|+|++|++++.+|... +..+++|++|++++|++++.+|..
T Consensus 376 l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~------- 447 (562)
T 3a79_B 376 LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT-CAWAESILVLNLSSNMLTGSVFRC------- 447 (562)
T ss_dssp CSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC-CCCCTTCCEEECCSSCCCGGGGSS-------
T ss_pred cCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhh-hcCcccCCEEECCCCCCCcchhhh-------
Confidence 66666666666666653 24456666666666666666666444331 245677888888888877554421
Q ss_pred ceeccccccccccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCcc
Q 047985 636 MKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNS 715 (930)
Q Consensus 636 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 715 (930)
.++.|+.|+|++|+++ .+|..+..+++|+.|+|++|+
T Consensus 448 ------------------------------------------l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 448 ------------------------------------------LPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQ 484 (562)
T ss_dssp ------------------------------------------CCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSC
T ss_pred ------------------------------------------hcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCC
Confidence 1235888999999998 788888899999999999999
Q ss_pred ccccCccc-ccccCCCCeeeCCCCcCcccCC
Q 047985 716 LHGHIPSC-LGNLTDLESLDLSNNRFSGQIP 745 (930)
Q Consensus 716 l~g~ip~~-l~~L~~L~~LdLs~N~lsg~ip 745 (930)
++ .+|.. ++.+++|+.|+|++|++++..|
T Consensus 485 l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 485 LK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 99 56665 9999999999999999998776
No 25
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.7e-41 Score=368.55 Aligned_cols=294 Identities=34% Similarity=0.548 Sum_probs=220.5
Q ss_pred CCCcHHHHHHHHHHHhhcCCCCCccccccCCCccCCCCCCCCCCCCCCCCCCCc--ccceEecCCC--CcEEEEEcCCCC
Q 047985 4 PLCHGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCS--WDGVQCNENT--GHVIKLDLSSSC 79 (930)
Q Consensus 4 ~~c~~~~~~aLl~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~~C~--w~gv~C~~~~--~~v~~L~L~~~~ 79 (930)
+.|.++|++||++||+++.++. .+++|.. +++||. |+||+|+..+ ++|+.|+|+++.
T Consensus 1 ~~c~~~~~~aL~~~k~~~~~~~---------------~l~~W~~----~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~ 61 (313)
T 1ogq_A 1 ELCNPQDKQALLQIKKDLGNPT---------------TLSSWLP----TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61 (313)
T ss_dssp CCSCHHHHHHHHHHHHHTTCCG---------------GGTTCCT----TSCTTTTCSTTEEECCSSSCCCEEEEEEECCC
T ss_pred CCCCHHHHHHHHHHHHhcCCcc---------------cccCCCC----CCCCCcCCCcceEeCCCCCCceEEEEECCCCC
Confidence 4699999999999999997542 5789976 578998 9999998655 899999999999
Q ss_pred Ccc--cccCcccccCCCCCCEEECCC-CCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCC
Q 047985 80 LQG--SINSSSSLFKLVHLEWLDLAF-NDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYY 156 (930)
Q Consensus 80 l~g--~~~~~~~l~~l~~L~~L~Ls~-n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~ 156 (930)
+.| .++. .+..+++|++|+|++ |.+.+. +|..++++++|++|+|++|.+++.+|..++++++|++|++++|.+
T Consensus 62 l~~~~~~~~--~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l- 137 (313)
T 1ogq_A 62 LPKPYPIPS--SLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL- 137 (313)
T ss_dssp CSSCEECCG--GGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE-
T ss_pred ccCCcccCh--hHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCcc-
Confidence 998 7766 899999999999995 888876 888899999999999999999989999999999999999998843
Q ss_pred CCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCC-CCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCC
Q 047985 157 DPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLS-SLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLS 235 (930)
Q Consensus 157 ~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 235 (930)
. +.+|..+.++++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..++ |++|++++|.++
T Consensus 138 ---~---~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 138 ---S---GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210 (313)
T ss_dssp ---E---SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE
T ss_pred ---C---CcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCccc
Confidence 2 34555666677777777777777666666666665 677777777766666666666665 666666666666
Q ss_pred CchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccc
Q 047985 236 DELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFG 315 (930)
Q Consensus 236 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 315 (930)
+..|..+..+++|++|++++|.+++.+|. +..+++|++|+|++|++++.+|..+..+++|++|+|++|++++.+|.. .
T Consensus 211 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~ 288 (313)
T 1ogq_A 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-G 288 (313)
T ss_dssp ECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-T
T ss_pred CcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-c
Confidence 66666666666666666666666655444 556666666666666666666666666666666666666666666554 5
Q ss_pred cccccceeeccccc
Q 047985 316 NLRSLRTLDVYECK 329 (930)
Q Consensus 316 ~l~~L~~L~L~~n~ 329 (930)
.+++|+.|++++|+
T Consensus 289 ~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 289 NLQRFDVSAYANNK 302 (313)
T ss_dssp TGGGSCGGGTCSSS
T ss_pred cccccChHHhcCCC
Confidence 56666666666665
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.6e-39 Score=370.48 Aligned_cols=402 Identities=24% Similarity=0.329 Sum_probs=188.0
Q ss_pred CCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEE
Q 047985 173 LTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELD 252 (930)
Q Consensus 173 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 252 (930)
.++|++|++++|.+ +.+|.+++++++|++|++++|.+.|.+|..++++++|+.+++..|.. .++++|+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence 46777777777777 67777777777777777777777777777777776665555444321 3567777
Q ss_pred ccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccC
Q 047985 253 LLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSG 332 (930)
Q Consensus 253 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 332 (930)
+++|.+++ +|.. .++|++|++++|.+++ +|.. +++|++|++++|++++ +|.. .++|++|++++|++++
T Consensus 78 l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~ 145 (454)
T 1jl5_A 78 LNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK 145 (454)
T ss_dssp CTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS
T ss_pred ecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC
Confidence 77777764 3331 3577777777777776 5543 3677777777777764 2221 1577777777777775
Q ss_pred CCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcchhh
Q 047985 333 QIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFL 412 (930)
Q Consensus 333 ~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l 412 (930)
+| .++.+++|++|++++|++++ +|. ..
T Consensus 146 -lp-~~~~l~~L~~L~l~~N~l~~-lp~-----~~--------------------------------------------- 172 (454)
T 1jl5_A 146 -LP-ELQNSSFLKIIDVDNNSLKK-LPD-----LP--------------------------------------------- 172 (454)
T ss_dssp -CC-CCTTCTTCCEEECCSSCCSC-CCC-----CC---------------------------------------------
T ss_pred -Cc-ccCCCCCCCEEECCCCcCcc-cCC-----Cc---------------------------------------------
Confidence 55 47777777777777777664 221 00
Q ss_pred hcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceee
Q 047985 413 KNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLD 492 (930)
Q Consensus 413 ~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~ 492 (930)
.+|++|++++|++++ +| .+. .+++|++|++++|+++++...+ ++|++|+
T Consensus 173 ---~~L~~L~L~~n~l~~-l~-~~~--~l~~L~~L~l~~N~l~~l~~~~------------------------~~L~~L~ 221 (454)
T 1jl5_A 173 ---PSLEFIAAGNNQLEE-LP-ELQ--NLPFLTAIYADNNSLKKLPDLP------------------------LSLESIV 221 (454)
T ss_dssp ---TTCCEEECCSSCCSS-CC-CCT--TCTTCCEEECCSSCCSSCCCCC------------------------TTCCEEE
T ss_pred ---ccccEEECcCCcCCc-Cc-ccc--CCCCCCEEECCCCcCCcCCCCc------------------------CcccEEE
Confidence 134444444444443 22 122 3444444444444443321100 2344555
Q ss_pred cccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEecccCcccc
Q 047985 493 LSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIR 572 (930)
Q Consensus 493 Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 572 (930)
+++|+++ .+|. ++.++. |++|++++|++++ +|.. .++|++|++++|++++ +|.. .++|+.|++++|+++
T Consensus 222 l~~n~l~-~lp~-~~~l~~-L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 222 AGNNILE-ELPE-LQNLPF-LTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFS 290 (454)
T ss_dssp CCSSCCS-SCCC-CTTCTT-CCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred CcCCcCC-cccc-cCCCCC-CCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccC
Confidence 5555444 3332 444443 5555555555542 2321 2445555555555554 2322 245555555555555
Q ss_pred ccCcccccCCCCCcEEEccCCcccccCCCCCccCCC-CCceEEECCCCcCcccCChHHHhhcccceeccccccccccccc
Q 047985 573 DIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGF-PKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVI 651 (930)
Q Consensus 573 ~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l-~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~ 651 (930)
+.. . ..++|+.|++++|++++.. .+ ++|++|++++|++++ +|..
T Consensus 291 ~l~-~---~~~~L~~L~l~~N~l~~i~-------~~~~~L~~L~Ls~N~l~~-lp~~----------------------- 335 (454)
T 1jl5_A 291 GLS-E---LPPNLYYLNASSNEIRSLC-------DLPPSLEELNVSNNKLIE-LPAL----------------------- 335 (454)
T ss_dssp EES-C---CCTTCCEEECCSSCCSEEC-------CCCTTCCEEECCSSCCSC-CCCC-----------------------
T ss_pred ccc-C---cCCcCCEEECcCCcCCccc-------CCcCcCCEEECCCCcccc-cccc-----------------------
Confidence 521 1 0145566666666555431 11 356666666666653 3311
Q ss_pred cCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCccccc--cCcccccccCC
Q 047985 652 PFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHG--HIPSCLGNLTD 729 (930)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g--~ip~~l~~L~~ 729 (930)
++.|+.|++++|+++ .+|. .+++|+.|+|++|++++ .+|.+++++
T Consensus 336 ---------------------------~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L-- 382 (454)
T 1jl5_A 336 ---------------------------PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL-- 382 (454)
T ss_dssp ---------------------------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE--
T ss_pred ---------------------------CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhh--
Confidence 123566666666666 3454 35666666666666666 555554432
Q ss_pred CCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccc--cCCC
Q 047985 730 LESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTG--PIPQ 770 (930)
Q Consensus 730 L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g--~iP~ 770 (930)
+.|.+.|.+|.. +++|++||+++|+++| .||.
T Consensus 383 ------~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~ 416 (454)
T 1jl5_A 383 ------RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE 416 (454)
T ss_dssp ------ECCC---------------------------------
T ss_pred ------hhcccccccccc---cCcCCEEECCCCcCCccccchh
Confidence 335555666553 3556666667776666 5664
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.8e-39 Score=370.31 Aligned_cols=425 Identities=23% Similarity=0.264 Sum_probs=205.6
Q ss_pred cccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhh
Q 047985 89 SLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGN 168 (930)
Q Consensus 89 ~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~ 168 (930)
.-.+.++|++|++++|.+ +. +|+.++++++|++|++++|.+.|.+|..++++++|++++++.|.
T Consensus 6 ~~~~~~~L~~L~l~~n~l-~~-iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~-------------- 69 (454)
T 1jl5_A 6 RNVSNTFLQEPLRHSSNL-TE-MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL-------------- 69 (454)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH--------------
T ss_pred cccccccchhhhcccCch-hh-CChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh--------------
Confidence 334568999999999999 44 89999999999999999999999999999999887555554441
Q ss_pred hhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCC
Q 047985 169 LADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSL 248 (930)
Q Consensus 169 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 248 (930)
..++++|++++|.+++. |. ..++|++|++++|.+++ +|.. +++|++|++++|.+++. +.. .++|
T Consensus 70 ----~~~l~~L~l~~~~l~~l-p~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L 133 (454)
T 1jl5_A 70 ----DRQAHELELNNLGLSSL-PE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLL 133 (454)
T ss_dssp ----HHTCSEEECTTSCCSCC-CS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTC
T ss_pred ----ccCCCEEEecCCccccC-CC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCC
Confidence 03455555555555442 11 12455555555555554 3432 24555555555555532 110 1455
Q ss_pred CEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccc
Q 047985 249 KELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYEC 328 (930)
Q Consensus 249 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n 328 (930)
++|++++|.+++ +| .++++++|++|++++|++++ +|..+ ++|++|++++|++++ +| .++.+++|++|++++|
T Consensus 134 ~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 134 EYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp CEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSS
T ss_pred CEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCC
Confidence 566666555553 44 35555566666666555553 33322 355556666665554 33 3555556666666665
Q ss_pred cccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCc
Q 047985 329 KFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEI 408 (930)
Q Consensus 329 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~i 408 (930)
++++ +|.. .++|++|++++|.++ .+|. +..+++|++|++++|++..++. .+.+|+.|++++|.+..+
T Consensus 206 ~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~---~~~l~~L~~L~l~~N~l~~l~~-----~~~~L~~L~l~~N~l~~l 272 (454)
T 1jl5_A 206 SLKK-LPDL---PLSLESIVAGNNILE-ELPE---LQNLPFLTTIYADNNLLKTLPD-----LPPSLEALNVRDNYLTDL 272 (454)
T ss_dssp CCSS-CCCC---CTTCCEEECCSSCCS-SCCC---CTTCTTCCEEECCSSCCSSCCS-----CCTTCCEEECCSSCCSCC
T ss_pred cCCc-CCCC---cCcccEEECcCCcCC-cccc---cCCCCCCCEEECCCCcCCcccc-----cccccCEEECCCCccccc
Confidence 5553 2322 135556666666555 3331 2455555666665555443221 124566666666666666
Q ss_pred chhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCC-CcceEEeccCcCCCCCchHHhhcccc
Q 047985 409 PKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHP-NTVNYLVSNNSLTGEIPSWICNLSNR 487 (930)
Q Consensus 409 p~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~l~~l~ls~n~l~g~ip~~~~~~~~~ 487 (930)
|.. .++|++|++++|++++ +|. ..++|++|++++|+++++...+ +++.+++++|++++ +|.. + ++
T Consensus 273 ~~~---~~~L~~L~ls~N~l~~-l~~-----~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~-~~ 338 (454)
T 1jl5_A 273 PEL---PQSLTFLDVSENIFSG-LSE-----LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---P-PR 338 (454)
T ss_dssp CCC---CTTCCEEECCSSCCSE-ESC-----CCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---C-TT
T ss_pred Ccc---cCcCCEEECcCCccCc-ccC-----cCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---C-Cc
Confidence 553 3677788888887765 221 1256777888888777766553 77777777777775 5543 2 67
Q ss_pred cceeecccccccCcCcccccccccCCceeecCCCcccc--ccCcccCCCCCccEEEccCccccccCCccccCCCCCcEec
Q 047985 488 LESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSG--TIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLD 565 (930)
Q Consensus 488 L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 565 (930)
|++|++++|++++ +|. .+. +|++|++++|++++ .+|..+.. ++.|.+.|.+|.. +++|+.||
T Consensus 339 L~~L~L~~N~l~~-lp~---~l~-~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ 402 (454)
T 1jl5_A 339 LERLIASFNHLAE-VPE---LPQ-NLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLH 402 (454)
T ss_dssp CCEEECCSSCCSC-CCC---CCT-TCCEEECCSSCCSSCCCCCTTCCE--------EECCC-------------------
T ss_pred CCEEECCCCcccc-ccc---hhh-hccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEE
Confidence 8888888888874 555 234 48888888888887 56655432 3446666666653 47899999
Q ss_pred ccCccccc--cCcccccCCCCCcEEEccCCcccccCCCC
Q 047985 566 LGDNQIRD--IFPSWLGTLPDLNVLILKSNKFHGLIREP 602 (930)
Q Consensus 566 Ls~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 602 (930)
+++|++++ .+|. +++.|.+.+|.+.+.++..
T Consensus 403 ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~ 435 (454)
T 1jl5_A 403 VETNPLREFPDIPE------SVEDLRMNSERVVDPYEFA 435 (454)
T ss_dssp ---------------------------------------
T ss_pred CCCCcCCccccchh------hHhheeCcCcccCCccccC
Confidence 99999987 5554 4566778888887766543
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.7e-37 Score=359.04 Aligned_cols=139 Identities=27% Similarity=0.322 Sum_probs=127.7
Q ss_pred cccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEec
Q 047985 486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLD 565 (930)
Q Consensus 486 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 565 (930)
++|+.|++++|.+++.+|..+..+++ |++|+|++|++++..|..+..+++|++|+|++|++++..|..|.++++|++|+
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTD-LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTT-CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred cCceEEEecCccccccchhhcccCCC-CCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 57999999999999988999999886 99999999999988888999999999999999999998899999999999999
Q ss_pred ccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCCh
Q 047985 566 LGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPS 627 (930)
Q Consensus 566 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~ 627 (930)
|++|++++..|..|..+++|++|+|++|++++..+..+ ..+++|++|++++|++++.+|.
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHh--ccCCcccEEEccCCCcccCCCc
Confidence 99999999999999999999999999999998765544 6789999999999999999983
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.7e-38 Score=360.81 Aligned_cols=365 Identities=21% Similarity=0.199 Sum_probs=202.7
Q ss_pred cccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhh
Q 047985 89 SLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGN 168 (930)
Q Consensus 89 ~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~ 168 (930)
.++++++|++|++++|.+++ +| .++.+++|++|+|++|.+++. | ++.+++|++|++++|.+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l------------- 97 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKL------------- 97 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCC-------------
T ss_pred ChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCC-------------
Confidence 56667777777777777765 34 467777777777777777653 3 66666677777766642
Q ss_pred hhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCC
Q 047985 169 LADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSL 248 (930)
Q Consensus 169 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 248 (930)
++. + ++++++|++|++++|++++. | ++.+++|++|++++|.+++. .++.+++|
T Consensus 98 ------------------~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L 150 (457)
T 3bz5_A 98 ------------------TNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQL 150 (457)
T ss_dssp ------------------SCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTC
T ss_pred ------------------cee-e--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcC
Confidence 221 1 34444555555555554432 2 44555555555555555543 14455555
Q ss_pred CEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccc
Q 047985 249 KELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYEC 328 (930)
Q Consensus 249 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n 328 (930)
++|++++|...+.+ .++.+++|++|++++|++++ +| +..+++|+.|++++|.+++. .++.+++|++|++++|
T Consensus 151 ~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 151 TELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSN 222 (457)
T ss_dssp CEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSS
T ss_pred CEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCC
Confidence 55555555443333 24555556666666665554 22 55555666666666665543 2555556666666666
Q ss_pred cccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCc
Q 047985 329 KFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEI 408 (930)
Q Consensus 329 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~i 408 (930)
++++ +| ++.+++|+.|++++|++++..+ ..+++|+.|+++.|
T Consensus 223 ~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~-----~~l~~L~~L~l~~n------------------------------ 264 (457)
T 3bz5_A 223 KLTE-ID--VTPLTQLTYFDCSVNPLTELDV-----STLSKLTTLHCIQT------------------------------ 264 (457)
T ss_dssp CCSC-CC--CTTCTTCSEEECCSSCCSCCCC-----TTCTTCCEEECTTC------------------------------
T ss_pred cccc-cC--ccccCCCCEEEeeCCcCCCcCH-----HHCCCCCEEeccCC------------------------------
Confidence 6554 33 5555556666666555554221 22233333333322
Q ss_pred chhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhccccc
Q 047985 409 PKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRL 488 (930)
Q Consensus 409 p~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L 488 (930)
+|+.|++++| .+.|.+|. ..+ ++|
T Consensus 265 --------~L~~L~l~~n---------------------------------------------~~~~~~~~--~~l-~~L 288 (457)
T 3bz5_A 265 --------DLLEIDLTHN---------------------------------------------TQLIYFQA--EGC-RKI 288 (457)
T ss_dssp --------CCSCCCCTTC---------------------------------------------TTCCEEEC--TTC-TTC
T ss_pred --------CCCEEECCCC---------------------------------------------ccCCcccc--ccc-ccC
Confidence 1222333333 33333331 222 556
Q ss_pred ceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEecccC
Q 047985 489 ESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGD 568 (930)
Q Consensus 489 ~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 568 (930)
+.|++++|.+.+.+|.. .. .|+.|++++| ++|++|++++|++++. + +.++++|+.|++++
T Consensus 289 ~~L~Ls~n~~l~~l~~~---~~-~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~ 348 (457)
T 3bz5_A 289 KELDVTHNTQLYLLDCQ---AA-GITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVN 348 (457)
T ss_dssp CCCCCTTCTTCCEEECT---TC-CCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCS
T ss_pred CEEECCCCcccceeccC---CC-cceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCcEEECCC
Confidence 66666666665555532 22 2555555444 4566777777777663 2 66677777777777
Q ss_pred ccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccc
Q 047985 569 NQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAM 636 (930)
Q Consensus 569 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l 636 (930)
|++++. +.|..|++++|.+.|. ..+..|+.+|+++|+++|.||...+.....+
T Consensus 349 N~l~~l--------~~L~~L~l~~n~l~g~-------~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~ 401 (457)
T 3bz5_A 349 AHIQDF--------SSVGKIPALNNNFEAE-------GQTITMPKETLTNNSLTIAVSPDLLDQFGNP 401 (457)
T ss_dssp SCCCBC--------TTGGGSSGGGTSEEEE-------EEEEECCCBCCBTTBEEEECCTTCBCTTSCC
T ss_pred CCCCCc--------cccccccccCCcEEec-------ceeeecCccccccCcEEEEcChhHhcccCce
Confidence 777652 3455556777777665 2345677788888888888887655444433
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3e-37 Score=356.95 Aligned_cols=319 Identities=22% Similarity=0.209 Sum_probs=202.1
Q ss_pred ccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhh--hcCCCCCCEEEccCCCCCCCcchh-hcCCC
Q 047985 194 LTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTF--IGTLGSLKELDLLQNNLSGELPNS-IGNLA 270 (930)
Q Consensus 194 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~ 270 (930)
|.++++|++|+|++|.+++..|..++++++|++|++++|.+++..+.. +..+++|++|++++|.+++..|.. +.+++
T Consensus 75 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 154 (455)
T 3v47_A 75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR 154 (455)
T ss_dssp TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT
T ss_pred ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC
Confidence 334444444444444554445555566666666666666666544443 666666666666666666655554 56667
Q ss_pred CCCEEEccCCCCCCCCCCCCCCC--cCCcEEEccCCCCCCccCccc--------ccccccceeecccccccCCCcccccC
Q 047985 271 SLEQVDLSLNRFLGKVPSSLGNL--TQLHWLSLASNDFSGELPASF--------GNLRSLRTLDVYECKFSGQIPSSLSN 340 (930)
Q Consensus 271 ~L~~L~Ls~n~l~~~~p~~l~~l--~~L~~L~Ls~N~l~~~~p~~l--------~~l~~L~~L~L~~n~l~~~~p~~l~~ 340 (930)
+|++|++++|++++..|..+..+ .+|+.|++++|.+.+..+..+ ..+++|++|++++|++++..|..+..
T Consensus 155 ~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 234 (455)
T 3v47_A 155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234 (455)
T ss_dssp TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred cccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhc
Confidence 77777777777666666666555 566667777766665433322 23345555555555555444443322
Q ss_pred C---CCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCc-chhhh--c
Q 047985 341 L---THLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEI-PKFLK--N 414 (930)
Q Consensus 341 l---~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~i-p~~l~--~ 414 (930)
. ++|+.|++++|...+.... .+.+... +..+. .
T Consensus 235 ~~~~~~L~~L~l~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~ 273 (455)
T 3v47_A 235 AIAGTKIQSLILSNSYNMGSSFG-----------------------------------------HTNFKDPDNFTFKGLE 273 (455)
T ss_dssp HTTTCCEEEEECTTCTTTSCCTT-----------------------------------------CCSSCCCCTTTTGGGT
T ss_pred cccccceeeEeeccccccccccc-----------------------------------------hhhhccCccccccccc
Confidence 1 4444444444433221100 0000000 00000 1
Q ss_pred CCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceeecc
Q 047985 415 QHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLS 494 (930)
Q Consensus 415 ~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls 494 (930)
.++|++|++++|.+.+ .+|..+..+ ++|++|+++
T Consensus 274 ~~~L~~L~l~~n~l~~---------------------------------------------~~~~~~~~l-~~L~~L~Ls 307 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFA---------------------------------------------LLKSVFSHF-TDLEQLTLA 307 (455)
T ss_dssp TSCCCEEECCSSCCCE---------------------------------------------ECTTTTTTC-TTCCEEECT
T ss_pred ccCceEEEecCccccc---------------------------------------------cchhhcccC-CCCCEEECC
Confidence 2344444444444443 344444455 678888888
Q ss_pred cccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEecccCcccccc
Q 047985 495 YNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDI 574 (930)
Q Consensus 495 ~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 574 (930)
+|++++..|..+..++. |++|+|++|.+++..|..+..+++|++|+|++|++++..|..|..+++|++|++++|++++.
T Consensus 308 ~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 386 (455)
T 3v47_A 308 QNEINKIDDNAFWGLTH-LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386 (455)
T ss_dssp TSCCCEECTTTTTTCTT-CCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccChhHhcCccc-CCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccC
Confidence 88888877888888885 99999999988877788888889999999999999888888899999999999999999988
Q ss_pred CcccccCCCCCcEEEccCCcccccCC
Q 047985 575 FPSWLGTLPDLNVLILKSNKFHGLIR 600 (930)
Q Consensus 575 ~p~~l~~l~~L~~L~L~~N~l~~~~~ 600 (930)
.+..+..+++|++|+|++|++++..|
T Consensus 387 ~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 387 PDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CHhHhccCCcccEEEccCCCcccCCC
Confidence 87788899999999999999987765
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=7e-36 Score=343.40 Aligned_cols=222 Identities=23% Similarity=0.260 Sum_probs=150.4
Q ss_pred CcEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcE
Q 047985 68 GHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAY 147 (930)
Q Consensus 68 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 147 (930)
.+++.|+++++.+.+. + .+..+++|++|+|++|.+++. | ++.+++|++|++++|.+++. | ++++++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~--~--~l~~l~~L~~L~Ls~n~l~~~--~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~ 110 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM--T--GIEKLTGLTKLICTSNNITTL--D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTY 110 (457)
T ss_dssp TTCCEEECCSSCCCCC--T--TGGGCTTCSEEECCSSCCSCC--C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCE
T ss_pred CCCCEEEccCCCcccC--h--hhcccCCCCEEEccCCcCCeE--c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCE
Confidence 5799999999999874 3 689999999999999999874 4 89999999999999999974 4 889999999
Q ss_pred EEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEE
Q 047985 148 LDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHL 227 (930)
Q Consensus 148 L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 227 (930)
|++++|.+. .++ +.++++|++|++++|.+++. .++++++|++|++++|...+.+ .+..+++|++|
T Consensus 111 L~L~~N~l~--------~l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 175 (457)
T 3bz5_A 111 LNCDTNKLT--------KLD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTL 175 (457)
T ss_dssp EECCSSCCS--------CCC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEE
T ss_pred EECCCCcCC--------eec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEE
Confidence 999999642 122 56677777777777777663 2566667777777766544444 35566666666
Q ss_pred EccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCC
Q 047985 228 DLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFS 307 (930)
Q Consensus 228 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 307 (930)
++++|.+++. | ++.+++|++|++++|.+++. .++.+++|++|++++|++++ +| +..+++|++|++++|+++
T Consensus 176 ~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 176 DCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp ECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS
T ss_pred ECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC
Confidence 6666666653 2 55556666666666666543 25555566666666665554 33 555555555555555555
Q ss_pred CccCcccccccccceeeccc
Q 047985 308 GELPASFGNLRSLRTLDVYE 327 (930)
Q Consensus 308 ~~~p~~l~~l~~L~~L~L~~ 327 (930)
+.. ++.+++|+.|++++
T Consensus 247 ~~~---~~~l~~L~~L~l~~ 263 (457)
T 3bz5_A 247 ELD---VSTLSKLTTLHCIQ 263 (457)
T ss_dssp CCC---CTTCTTCCEEECTT
T ss_pred CcC---HHHCCCCCEEeccC
Confidence 432 23344445554443
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.1e-33 Score=327.62 Aligned_cols=79 Identities=32% Similarity=0.411 Sum_probs=49.2
Q ss_pred ccEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCC
Q 047985 682 LTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSD 761 (930)
Q Consensus 682 L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~ 761 (930)
|+.|+|++|++++..| ++.+++|+.|++++|.+++. ..++++++|+.|++++|++++.+| +..++.|+.|++++
T Consensus 311 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~ 384 (466)
T 1o6v_A 311 LTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 384 (466)
T ss_dssp CSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCC
T ss_pred CCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccC
Confidence 4555555555554444 45566666666666666654 346666666666666666666655 56666666666666
Q ss_pred Ccccc
Q 047985 762 NHFTG 766 (930)
Q Consensus 762 N~L~g 766 (930)
|++++
T Consensus 385 n~~~~ 389 (466)
T 1o6v_A 385 QAWTN 389 (466)
T ss_dssp EEEEC
T ss_pred CcccC
Confidence 66665
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.8e-33 Score=324.25 Aligned_cols=235 Identities=28% Similarity=0.383 Sum_probs=126.5
Q ss_pred cCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhh
Q 047985 91 FKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLA 170 (930)
Q Consensus 91 ~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l 170 (930)
..+++|+.|+++++.+.. +| .+..+++|++|+|++|.+.+..| ++++++|++|++++|.+. .++. +
T Consensus 43 ~~l~~l~~L~l~~~~i~~--l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~--------~~~~-~ 108 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS--ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA--------DITP-L 108 (466)
T ss_dssp HHHHTCCEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC--------CCGG-G
T ss_pred hHhccccEEecCCCCCcc--Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc--------cChh-h
Confidence 346677777777777654 44 36677777777777777774433 777777777777777431 1222 5
Q ss_pred hCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCE
Q 047985 171 DKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKE 250 (930)
Q Consensus 171 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 250 (930)
.++++|++|++++|.+++..+ +.++++|++|++++|.+.+. + .+..+++|++|+++ |.+.+..+ +.++++|++
T Consensus 109 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~ 181 (466)
T 1o6v_A 109 ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLKP--LANLTTLER 181 (466)
T ss_dssp TTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCE
T ss_pred cCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCchh--hccCCCCCE
Confidence 556666666666666555432 55666666666666665532 2 35556666666664 33333222 555555666
Q ss_pred EEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccc
Q 047985 251 LDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKF 330 (930)
Q Consensus 251 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l 330 (930)
|++++|.+++. ..+..+++|++|++++|.+.+..| ++.+++|++|++++|.+++. ..+..+++|++|++++|.+
T Consensus 182 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l 255 (466)
T 1o6v_A 182 LDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQI 255 (466)
T ss_dssp EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred EECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCcc
Confidence 66655555532 124555555555555555554433 44455555555555554432 2234444444444444444
Q ss_pred cCCCcccccCCCCCCEEEccCCCC
Q 047985 331 SGQIPSSLSNLTHLSFLDFSLNNF 354 (930)
Q Consensus 331 ~~~~p~~l~~l~~L~~L~Ls~n~l 354 (930)
++..+ +..+++|++|++++|.+
T Consensus 256 ~~~~~--~~~l~~L~~L~l~~n~l 277 (466)
T 1o6v_A 256 SNLAP--LSGLTKLTELKLGANQI 277 (466)
T ss_dssp CCCGG--GTTCTTCSEEECCSSCC
T ss_pred ccchh--hhcCCCCCEEECCCCcc
Confidence 43222 33344444444444333
No 34
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.4e-34 Score=316.44 Aligned_cols=259 Identities=34% Similarity=0.533 Sum_probs=226.6
Q ss_pred cccceeecccccccC--cCcccccccccCCceeecCC-CccccccCcccCCCCCccEEEccCccccccCCccccCCCCCc
Q 047985 486 NRLESLDLSYNNLSG--LLPQCLGNFSDWLSILDLQH-NKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLE 562 (930)
Q Consensus 486 ~~L~~L~Ls~N~l~~--~~p~~l~~~~~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 562 (930)
.+++.|++++|.+++ .+|..+..++. |++|++++ |.+.+.+|..+..+++|++|+|++|++++.+|..|.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~-L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPY-LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTT-CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCC-CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 467888888888888 78888888885 88888884 888888888888888888888888888888888888888888
Q ss_pred EecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCC-CceEEECCCCcCcccCChHHHhhcccceeccc
Q 047985 563 FLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFP-KLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNA 641 (930)
Q Consensus 563 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~ 641 (930)
+|++++|++++.+|..+..+++|++|+|++|++++.+|..+ ..++ .|++|++++|++++.+|... ..
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~~L~~L~L~~N~l~~~~~~~~-~~--------- 196 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPTF-AN--------- 196 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GCCCTTCCEEECCSSEEEEECCGGG-GG---------
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH--hhhhhcCcEEECcCCeeeccCChHH-hC---------
Confidence 88888888888888888888889999999988888777655 5566 89999999999988877541 11
Q ss_pred cccccccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCccccccCc
Q 047985 642 SELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIP 721 (930)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 721 (930)
.. |+.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|
T Consensus 197 -------------------------------------l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 238 (313)
T 1ogq_A 197 -------------------------------------LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238 (313)
T ss_dssp -------------------------------------CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG
T ss_pred -------------------------------------Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC
Confidence 12 8899999999999999999999999999999999998877
Q ss_pred ccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccccCCCCCCcCccCCcccCCCCCCCCCCCCCCC
Q 047985 722 SCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRPLSSEC 797 (930)
Q Consensus 722 ~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g~iP~~~~~~~~~~~s~~gn~~Lcg~~l~~~c 797 (930)
. ++.+++|++|||++|+++|.+|..+..+++|++|++++|+++|.+|...++..+....+.||+.+||.|+. .|
T Consensus 239 ~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 239 K-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp G-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred c-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 7 89999999999999999999999999999999999999999999999888888888999999999998876 47
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=328.19 Aligned_cols=344 Identities=20% Similarity=0.188 Sum_probs=260.4
Q ss_pred EEEccCCcccccccccCCCCccccceeeeccCCCCCc-chhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEecc
Q 047985 372 HLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEI-PKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLS 450 (930)
Q Consensus 372 ~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~i-p~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls 450 (930)
.++.+++.+..++.. .+..++.|++++|.+..+ +..+..+++|++|+|++|.+.+..|..+. .+++|++|+|+
T Consensus 15 ~v~c~~~~l~~ip~~----~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~ 88 (477)
T 2id5_A 15 AVLCHRKRFVAVPEG----IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN--NLFNLRTLGLR 88 (477)
T ss_dssp EEECCSCCCSSCCSC----CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECC
T ss_pred EEEeCCCCcCcCCCC----CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhh--CCccCCEEECC
Confidence 455555544433221 234556666666666644 34555666666666666666555555554 55555555555
Q ss_pred CccCcCCCCCCCcceEEeccCcCCCCCch-HHhhcccccceeecccccccCcCcccccccccCCceeecCCCccccccCc
Q 047985 451 HNFLTGFDQHPNTVNYLVSNNSLTGEIPS-WICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPD 529 (930)
Q Consensus 451 ~N~l~~~~~~~~l~~l~ls~n~l~g~ip~-~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~ 529 (930)
+|+++ .+|. .+..+ ++|++|++++|++++..|..+..+++ |++|++++|.+++..|.
T Consensus 89 ~n~l~--------------------~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~ 146 (477)
T 2id5_A 89 SNRLK--------------------LIPLGVFTGL-SNLTKLDISENKIVILLDYMFQDLYN-LKSLEVGDNDLVYISHR 146 (477)
T ss_dssp SSCCC--------------------SCCTTSSTTC-TTCCEEECTTSCCCEECTTTTTTCTT-CCEEEECCTTCCEECTT
T ss_pred CCcCC--------------------ccCcccccCC-CCCCEEECCCCccccCChhHcccccc-CCEEECCCCccceeChh
Confidence 55444 3333 34455 78999999999998888888888885 99999999999888888
Q ss_pred ccCCCCCccEEEccCccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCC
Q 047985 530 NLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFP 609 (930)
Q Consensus 530 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~ 609 (930)
.+..+++|++|++++|++++..+..|.++++|+.|++++|++.+..+..|..+++|+.|++++|++.+.++... ....
T Consensus 147 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~ 224 (477)
T 2id5_A 147 AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC--LYGL 224 (477)
T ss_dssp SSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT--TTTC
T ss_pred hccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc--ccCc
Confidence 88889999999999999988777788999999999999999999888888999999999999988877776654 3345
Q ss_pred CceEEECCCCcCcccCChHHHhhcccceeccccccccccccccCCCCCccceeeeEeeecccccccccccccccEEEccc
Q 047985 610 KLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSS 689 (930)
Q Consensus 610 ~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 689 (930)
+|+.|++++|.++ .+|...+.. ++.|+.|+|++
T Consensus 225 ~L~~L~l~~n~l~-~~~~~~~~~----------------------------------------------l~~L~~L~Ls~ 257 (477)
T 2id5_A 225 NLTSLSITHCNLT-AVPYLAVRH----------------------------------------------LVYLRFLNLSY 257 (477)
T ss_dssp CCSEEEEESSCCC-SCCHHHHTT----------------------------------------------CTTCCEEECCS
T ss_pred cccEEECcCCccc-ccCHHHhcC----------------------------------------------ccccCeeECCC
Confidence 8999999999887 556443332 34589999999
Q ss_pred ccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccccCC
Q 047985 690 NRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIP 769 (930)
Q Consensus 690 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g~iP 769 (930)
|.+++..+..|..+++|+.|+|++|++++..|..|+++++|+.|||++|++++..+..|..+++|++|++++|++.+..+
T Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 258 NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp SCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred CcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 99999888899999999999999999999999999999999999999999998888889999999999999999987544
Q ss_pred CCCCcCccCCcccCCCCCCCCCC
Q 047985 770 QGKQFATFDKTSFDGNSGLCGRP 792 (930)
Q Consensus 770 ~~~~~~~~~~~s~~gn~~Lcg~~ 792 (930)
..-.+.......+.++...|..|
T Consensus 338 ~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 338 LLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp GHHHHTTTTSSCCTTCCCBEEES
T ss_pred hHhHHhhhhccccCccCceeCCc
Confidence 21111222334567777777655
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-32 Score=319.34 Aligned_cols=301 Identities=22% Similarity=0.202 Sum_probs=140.6
Q ss_pred CCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEcc
Q 047985 223 RLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLA 302 (930)
Q Consensus 223 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 302 (930)
+++.|++++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|+
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 44444555544444444444445555555555555544444445555555555555555544433444555555555555
Q ss_pred CCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccc
Q 047985 303 SNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSL 382 (930)
Q Consensus 303 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 382 (930)
+|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+ ..+ ..+++|+.|++++|.+..
T Consensus 113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l-~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT-EAL-SHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH-HHH-TTCTTCCEEEEESCCCCE
T ss_pred CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh-hHh-cccCCCcEEeCCCCcCcE
Confidence 555554444455555555555555555554444455555555555555554442211 111 112222222222211110
Q ss_pred cccccCCCCccccceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCC
Q 047985 383 LTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPN 462 (930)
Q Consensus 383 ~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 462 (930)
.. +..+..+++|+.|++++|.+.+.+|
T Consensus 191 ~~------------------------~~~~~~l~~L~~L~l~~~~~~~~~~----------------------------- 217 (477)
T 2id5_A 191 IR------------------------DYSFKRLYRLKVLEISHWPYLDTMT----------------------------- 217 (477)
T ss_dssp EC------------------------TTCSCSCTTCCEEEEECCTTCCEEC-----------------------------
T ss_pred eC------------------------hhhcccCcccceeeCCCCccccccC-----------------------------
Confidence 00 0112233444444444444333222
Q ss_pred cceEEeccCcCCCCCchHHhhcccccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEc
Q 047985 463 TVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDL 542 (930)
Q Consensus 463 l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 542 (930)
...... .+|+.|++++|++++..+..+..++. |+.|+|++|.+++..+..+..+++|+.|+|
T Consensus 218 ----------------~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (477)
T 2id5_A 218 ----------------PNCLYG-LNLTSLSITHCNLTAVPYLAVRHLVY-LRFLNLSYNPISTIEGSMLHELLRLQEIQL 279 (477)
T ss_dssp ----------------TTTTTT-CCCSEEEEESSCCCSCCHHHHTTCTT-CCEEECCSSCCCEECTTSCTTCTTCCEEEC
T ss_pred ----------------cccccC-ccccEEECcCCcccccCHHHhcCccc-cCeeECCCCcCCccChhhccccccCCEEEC
Confidence 222222 34556666666555433344455543 555555555555444444555555555555
Q ss_pred cCccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCccc
Q 047985 543 SDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFH 596 (930)
Q Consensus 543 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 596 (930)
++|++++..|..|.++++|+.|+|++|++++..+..|..+++|++|+|++|++.
T Consensus 280 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 280 VGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 555555555555555555555555555555554444444444444444444443
No 37
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=7.5e-33 Score=304.50 Aligned_cols=272 Identities=22% Similarity=0.330 Sum_probs=143.9
Q ss_pred CCcHHHHHHHHHHHhhcCCCCCccccccCCCccCCCCCCCCCCCCCCCCCCCcccceEecC--------CCCcEEEEEcC
Q 047985 5 LCHGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCSWDGVQCNE--------NTGHVIKLDLS 76 (930)
Q Consensus 5 ~c~~~~~~aLl~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~~C~w~gv~C~~--------~~~~v~~L~L~ 76 (930)
.+..+|++||++||+++..++.+ .+++|........++|.|.|+.|+. ..++|+.|+|+
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~-------------~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~ 89 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNR-------------WHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELR 89 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTT-------------HHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEE
T ss_pred ccCchHHHHHHHHHHhccCCchh-------------hhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEcc
Confidence 35678999999999998644431 4578841111156899999999952 22455566666
Q ss_pred CCCCcccccCcccccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCC
Q 047985 77 SSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYY 156 (930)
Q Consensus 77 ~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~ 156 (930)
++.+. .+++ .++++++|++|+|++|.+. .+|..++.+++|++|+|++|.++ .+|..++++++|++|++++|
T Consensus 90 ~n~l~-~lp~--~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n--- 160 (328)
T 4fcg_A 90 SVPLP-QFPD--QAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC--- 160 (328)
T ss_dssp SSCCS-SCCS--CGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEE---
T ss_pred CCCch-hcCh--hhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCC---
Confidence 55554 3333 4555555555555555554 24555555555555555555555 44555555555555555554
Q ss_pred CCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhcc---------CCCCCCEEEccCCCCCCCCcccccCCCCCcEE
Q 047985 157 DPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLT---------YLSSLTTLSLSGCDLRGRIPSSLGNITRLIHL 227 (930)
Q Consensus 157 ~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~---------~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 227 (930)
++.+.+|..+. ++++|++|++++|.++ .+|..++++++|++|
T Consensus 161 ----------------------------~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L 211 (328)
T 4fcg_A 161 ----------------------------PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSL 211 (328)
T ss_dssp ----------------------------TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEE
T ss_pred ----------------------------CCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEE
Confidence 33344443332 3444555555544444 344444444444444
Q ss_pred EccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCC
Q 047985 228 DLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFS 307 (930)
Q Consensus 228 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 307 (930)
++++|.+++ +|..++.+++|++|+|++|.+.+.+|..+..+++|++|++++|.+.
T Consensus 212 ~L~~N~l~~-------------------------l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 266 (328)
T 4fcg_A 212 KIRNSPLSA-------------------------LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266 (328)
T ss_dssp EEESSCCCC-------------------------CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC
T ss_pred EccCCCCCc-------------------------CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCch
Confidence 444444443 3333444444444444444444444444444455555555554444
Q ss_pred CccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCC
Q 047985 308 GELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLN 352 (930)
Q Consensus 308 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 352 (930)
+.+|..+..+++|++|+|++|++.+.+|..++++++|+.+++..+
T Consensus 267 ~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred hhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 444544555555555555555555555555555555555555443
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=1.6e-31 Score=302.21 Aligned_cols=349 Identities=19% Similarity=0.141 Sum_probs=240.9
Q ss_pred CCCCCCCCCCCCCCCCc-ccceEecCCCCcEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCch-hccCC
Q 047985 41 KAASWKPEEGNNIDCCS-WDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPP-EIINL 118 (930)
Q Consensus 41 ~l~~W~~~~~~~~~~C~-w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~-~l~~l 118 (930)
.+++|.. +.+||. |.++.|.... +.+........... .-..++++++|++++|.+.. +|. .+..+
T Consensus 2 ~~~~~~~----~~~C~~~~~~~~c~~~~-----~~i~~~~~~~~~~~--~~~~l~~l~~l~l~~~~l~~--l~~~~~~~l 68 (390)
T 3o6n_A 2 NVKPRQP----EYKCIDSNLQYDCVFYD-----VHIDMQTQDVYFGF--EDITLNNQKIVTFKNSTMRK--LPAALLDSF 68 (390)
T ss_dssp -----CC----EECBCC------EEEES-----CEECSSCCCCEESC--SSGGGCCCSEEEEESCEESE--ECTHHHHHC
T ss_pred CcCCCCC----ccceehhhhhhccceee-----eeeecccccccccc--cccccCCceEEEecCCchhh--CChhHhccc
Confidence 4678987 578875 5555553211 12222221111111 33467899999999998875 454 47889
Q ss_pred CCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCC
Q 047985 119 SSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLS 198 (930)
Q Consensus 119 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 198 (930)
++|++|+|++|.+.+..+..++.+++|++|++++|.+. ...+..+.++++|++|++++|.++...+..+.+++
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 141 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-------YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTP 141 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-------cCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCC
Confidence 99999999999999777778999999999999999542 22345567888888888888888866555678888
Q ss_pred CCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEcc
Q 047985 199 SLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLS 278 (930)
Q Consensus 199 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 278 (930)
+|++|++++|.+++..+..+..+++|++|++++|.+++. .+..+++|++|++++|.+++ +...++|+.|+++
T Consensus 142 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~ 213 (390)
T 3o6n_A 142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDAS 213 (390)
T ss_dssp TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECC
T ss_pred CCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECC
Confidence 888888888888877777788888888888888888765 24566788888888887763 2344678888888
Q ss_pred CCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCC
Q 047985 279 LNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKM 358 (930)
Q Consensus 279 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 358 (930)
+|.+... |.. ..++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..
T Consensus 214 ~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 288 (390)
T 3o6n_A 214 HNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN 288 (390)
T ss_dssp SSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEE
T ss_pred CCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccC
Confidence 8887654 332 246788888888888754 46777888888888888888777777888888888888888776421
Q ss_pred chhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccccC
Q 047985 359 DLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLD 438 (930)
Q Consensus 359 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~ 438 (930)
. . ... .++|+.|++++|.+..+|..+..+++|++|++++|++++. + +.
T Consensus 289 ~-~--~~~-------------------------l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~- 336 (390)
T 3o6n_A 289 L-Y--GQP-------------------------IPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL-K--LS- 336 (390)
T ss_dssp C-S--SSC-------------------------CTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC-C--CC-
T ss_pred c-c--cCC-------------------------CCCCCEEECCCCcceecCccccccCcCCEEECCCCcccee-C--ch-
Confidence 1 1 022 3445555555556666777777888889999998888754 2 22
Q ss_pred CCCCCceEEeccCccCc
Q 047985 439 PSMQNFGHLNLSHNFLT 455 (930)
Q Consensus 439 ~~l~~L~~L~Ls~N~l~ 455 (930)
.+++|+.|++++|.++
T Consensus 337 -~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 337 -THHTLKNLTLSHNDWD 352 (390)
T ss_dssp -TTCCCSEEECCSSCEE
T ss_pred -hhccCCEEEcCCCCcc
Confidence 5677777777777654
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=2.8e-31 Score=300.21 Aligned_cols=131 Identities=24% Similarity=0.238 Sum_probs=93.6
Q ss_pred cccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEec
Q 047985 486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLD 565 (930)
Q Consensus 486 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 565 (930)
++|+.|++++|.+++. ..+..++. |++|++++|.+++..|..+..+++|++|+|++|++++ +|..+..+++|++|+
T Consensus 226 ~~L~~L~l~~n~l~~~--~~l~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~ 301 (390)
T 3o6n_A 226 VELTILKLQHNNLTDT--AWLLNYPG-LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLD 301 (390)
T ss_dssp SSCCEEECCSSCCCCC--GGGGGCTT-CSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEE
T ss_pred ccccEEECCCCCCccc--HHHcCCCC-ccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEE
Confidence 4566666666666643 34555664 7777777777776667777777777777777777775 355566778888888
Q ss_pred ccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCC
Q 047985 566 LGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLP 626 (930)
Q Consensus 566 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip 626 (930)
+++|++++. |..+..+++|++|+|++|+++... ...+++|+.|++++|++.+...
T Consensus 302 L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~~~-----~~~~~~L~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 302 LSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK-----LSTHHTLKNLTLSHNDWDCNSL 356 (390)
T ss_dssp CCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC-----CCTTCCCSEEECCSSCEEHHHH
T ss_pred CCCCcceec-CccccccCcCCEEECCCCccceeC-----chhhccCCEEEcCCCCccchhH
Confidence 888888754 556777888888888888887652 2567889999999999886433
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=3e-31 Score=316.63 Aligned_cols=317 Identities=21% Similarity=0.186 Sum_probs=213.8
Q ss_pred CCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEE
Q 047985 197 LSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVD 276 (930)
Q Consensus 197 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 276 (930)
+.+++.|++++|.+....+..+.++++|++|++++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 46788888888887765555667777888888888887777666777777777777777777776666677777777777
Q ss_pred ccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCC
Q 047985 277 LSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSG 356 (930)
Q Consensus 277 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 356 (930)
|++|.+++..+..|+++++|++|+|++|.+++..|..++.+++|++|++++|.+++.. ++.+++|+.|++++|.+++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc
Confidence 7777777555555677777777777777777666666666667777777666665431 3344555555555554432
Q ss_pred CCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccc
Q 047985 357 KMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWL 436 (930)
Q Consensus 357 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~ 436 (930)
. ...++|+.|++++|.+....+
T Consensus 207 l-------------------------------------------------------~~~~~L~~L~ls~n~l~~~~~--- 228 (597)
T 3oja_B 207 L-------------------------------------------------------AIPIAVEELDASHNSINVVRG--- 228 (597)
T ss_dssp E-------------------------------------------------------ECCTTCSEEECCSSCCCEEEC---
T ss_pred c-------------------------------------------------------cCCchhheeeccCCccccccc---
Confidence 1 112234555555554431111
Q ss_pred cCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceeecccccccCcCcccccccccCCcee
Q 047985 437 LDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSIL 516 (930)
Q Consensus 437 ~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L 516 (930)
.++ ++|+.|++++|.+++. ..+..++. |+.|
T Consensus 229 ---------------------------------------~~~-------~~L~~L~L~~n~l~~~--~~l~~l~~-L~~L 259 (597)
T 3oja_B 229 ---------------------------------------PVN-------VELTILKLQHNNLTDT--AWLLNYPG-LVEV 259 (597)
T ss_dssp ---------------------------------------SCC-------SCCCEEECCSSCCCCC--GGGGGCTT-CSEE
T ss_pred ---------------------------------------ccC-------CCCCEEECCCCCCCCC--hhhccCCC-CCEE
Confidence 010 3466666666666652 45566664 7777
Q ss_pred ecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCccc
Q 047985 517 DLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFH 596 (930)
Q Consensus 517 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 596 (930)
+|++|.+++..|..+..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|++++ +|..+..+++|+.|+|++|++.
T Consensus 260 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 260 DLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp ECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCC
T ss_pred ECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCC
Confidence 777777777777777777777777777777775 35566677888888888888874 4666777888888888888887
Q ss_pred ccCCCCCccCCCCCceEEECCCCcCcccCChHHH
Q 047985 597 GLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAF 630 (930)
Q Consensus 597 ~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~ 630 (930)
+.. ...+++|+.|++++|++++..+..++
T Consensus 338 ~~~-----~~~~~~L~~L~l~~N~~~~~~~~~~~ 366 (597)
T 3oja_B 338 TLK-----LSTHHTLKNLTLSHNDWDCNSLRALF 366 (597)
T ss_dssp CCC-----CCTTCCCSEEECCSSCEEHHHHHHHT
T ss_pred CcC-----hhhcCCCCEEEeeCCCCCChhHHHHH
Confidence 652 24578899999999999876444433
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=5.6e-31 Score=314.31 Aligned_cols=347 Identities=19% Similarity=0.160 Sum_probs=252.0
Q ss_pred CCCCCCCCCCCCCCCCc----ccceEecCCCCcEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCchhcc
Q 047985 41 KAASWKPEEGNNIDCCS----WDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEII 116 (930)
Q Consensus 41 ~l~~W~~~~~~~~~~C~----w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~ 116 (930)
.+++|.+ +.+||. |.++.|+. .++.........+ .-..+.+++.|++++|.+... .+..+.
T Consensus 8 ~l~~~~~----~~~C~~~~~~~~c~~~~~------~i~~~~~~~~~~~----~~l~l~~l~~l~l~~~~l~~l-p~~~~~ 72 (597)
T 3oja_B 8 NVKPRQP----EYKCIDSNLQYDCVFYDV------HIDMQTQDVYFGF----EDITLNNQKIVTFKNSTMRKL-PAALLD 72 (597)
T ss_dssp ---CCCS----EECCCCC--CCSEEECSC------EECSSCCCCEESC----SSGGGCCCSEEEESSCEESEE-CTHHHH
T ss_pred cccCCCC----CCcCcccCcCceeEecCc------eecccccccccCc----ccccCCCceEEEeeCCCCCCc-CHHHHc
Confidence 5789987 567774 66666642 1121111111111 233578999999999988753 334578
Q ss_pred CCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccC
Q 047985 117 NLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTY 196 (930)
Q Consensus 117 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 196 (930)
.+++|++|+|++|.+.+..|..++.+++|++|+|++|.+. ...+..+.++++|++|++++|.+++..+..|++
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 145 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-------YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145 (597)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-------CCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhcc
Confidence 8999999999999999888888999999999999999542 223455678888999999998888776666788
Q ss_pred CCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEE
Q 047985 197 LSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVD 276 (930)
Q Consensus 197 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 276 (930)
+++|++|+|++|.+++..|..++++++|++|++++|.+++.. ++.+++|+.|++++|.+++ +...++|+.|+
T Consensus 146 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ 217 (597)
T 3oja_B 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELD 217 (597)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEE
T ss_pred CCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchhheee
Confidence 889999999999888888888888888999999988887653 4567788888888888774 34456788888
Q ss_pred ccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCC
Q 047985 277 LSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSG 356 (930)
Q Consensus 277 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 356 (930)
+++|.+....+. + .++|+.|+|++|.+++ +..+..+++|++|+|++|.+++..|..+..+++|+.|+|++|.+++
T Consensus 218 ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 292 (597)
T 3oja_B 218 ASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 292 (597)
T ss_dssp CCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE
T ss_pred ccCCcccccccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC
Confidence 888887654332 2 2578888888888876 3667888888888888888888888888888888888888888765
Q ss_pred CCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccc
Q 047985 357 KMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWL 436 (930)
Q Consensus 357 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~ 436 (930)
. +.. ...+ ++|+.|++++|.+..+|..+..+++|+.|+|++|.+.+.. +
T Consensus 293 l-~~~--~~~l-------------------------~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~---~ 341 (597)
T 3oja_B 293 L-NLY--GQPI-------------------------PTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK---L 341 (597)
T ss_dssp E-ECS--SSCC-------------------------TTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC---C
T ss_pred C-Ccc--cccC-------------------------CCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC---h
Confidence 2 211 0223 3455555555566667777788888888888888887542 1
Q ss_pred cCCCCCCceEEeccCccCc
Q 047985 437 LDPSMQNFGHLNLSHNFLT 455 (930)
Q Consensus 437 ~~~~l~~L~~L~Ls~N~l~ 455 (930)
. .+++|+.|++++|.+.
T Consensus 342 ~--~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 342 S--THHTLKNLTLSHNDWD 358 (597)
T ss_dssp C--TTCCCSEEECCSSCEE
T ss_pred h--hcCCCCEEEeeCCCCC
Confidence 1 5567777777776554
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.1e-29 Score=282.30 Aligned_cols=129 Identities=29% Similarity=0.422 Sum_probs=56.9
Q ss_pred ccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCc
Q 047985 218 LGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLH 297 (930)
Q Consensus 218 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 297 (930)
+..+++|++|++++|.+++..+ +..+++|++|++++|.++. +| .+..+++|++|++++|.+.+..+ +..+++|+
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~ 135 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISDISP--LANLTKMY 135 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCCCGG--GTTCTTCC
T ss_pred hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccCchh--hccCCcee
Confidence 3334444444444444443222 4444444444444444442 12 34444444444444444443222 44444444
Q ss_pred EEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCC
Q 047985 298 WLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFS 355 (930)
Q Consensus 298 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 355 (930)
+|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.
T Consensus 136 ~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 136 SLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp EEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred EEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence 44444443332222 24445555555555555443222 445555555555555544
No 43
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=4.1e-29 Score=277.70 Aligned_cols=308 Identities=28% Similarity=0.374 Sum_probs=186.4
Q ss_pred cccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhh
Q 047985 89 SLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGN 168 (930)
Q Consensus 89 ~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~ 168 (930)
.+..+++|++|+++++.+.. +| .+..+++|++|++++|.+++ +|. +..+++|++|++++|.+. .+ .
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~--------~~-~ 104 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKIT--------DI-S 104 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC--------CC-G
T ss_pred cchhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCccc--------Cc-h
Confidence 34456666777777666653 33 36666677777777766663 333 666667777777666431 11 2
Q ss_pred hhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCC
Q 047985 169 LADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSL 248 (930)
Q Consensus 169 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 248 (930)
.+.++++|++|++++|.+.+..+ +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|
T Consensus 105 ~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L 179 (347)
T 4fmz_A 105 ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDL 179 (347)
T ss_dssp GGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTC
T ss_pred HHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCC
Confidence 35566666666666666655433 6666677777777665443333 36666677777777776665433 5666677
Q ss_pred CEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccc
Q 047985 249 KELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYEC 328 (930)
Q Consensus 249 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n 328 (930)
++|++++|.+++..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|
T Consensus 180 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 253 (347)
T 4fmz_A 180 YSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTN 253 (347)
T ss_dssp SEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCC
Confidence 777777776664322 6666677777777776665433 6666667777777776664433 666666777777777
Q ss_pred cccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCccccceeeeccCCCCCc
Q 047985 329 KFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRFRAVSLCSCDLTEI 408 (930)
Q Consensus 329 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~i 408 (930)
.+++. +.+..+++|++|++++|.+++. + . +..+++|+.|++++|++.. ..
T Consensus 254 ~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~--~-~~~l~~L~~L~L~~n~l~~------------------------~~ 303 (347)
T 4fmz_A 254 QISDI--NAVKDLTKLKMLNVGSNQISDI-S--V-LNNLSQLNSLFLNNNQLGN------------------------ED 303 (347)
T ss_dssp CCCCC--GGGTTCTTCCEEECCSSCCCCC-G--G-GGGCTTCSEEECCSSCCCG------------------------GG
T ss_pred ccCCC--hhHhcCCCcCEEEccCCccCCC-h--h-hcCCCCCCEEECcCCcCCC------------------------cC
Confidence 66642 3466666677777776666543 1 1 1444555555555443221 23
Q ss_pred chhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCc
Q 047985 409 PKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLT 455 (930)
Q Consensus 409 p~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~ 455 (930)
|..+..+++|++|++++|++++..| +. .+++|+.|++++|.++
T Consensus 304 ~~~l~~l~~L~~L~L~~n~l~~~~~--~~--~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 304 MEVIGGLTNLTTLFLSQNHITDIRP--LA--SLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHHHTCTTCSEEECCSSSCCCCGG--GG--GCTTCSEESSSCC---
T ss_pred hhHhhccccCCEEEccCCccccccC--hh--hhhccceeehhhhccc
Confidence 4556777788888888888776655 22 5677777777777664
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=6e-33 Score=321.46 Aligned_cols=59 Identities=19% Similarity=0.259 Sum_probs=26.0
Q ss_pred CCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCc----cCCccccCCCCCcEEEccCC
Q 047985 95 HLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSG----QIPSEILELSKLAYLDLSHN 153 (930)
Q Consensus 95 ~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n 153 (930)
+|++|||++|.++.......+..+++|++|+|++|.+++ .++..+..+++|++|++++|
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 66 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 66 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC
Confidence 344444444444332122224444555555555555442 22333444455555555544
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.3e-32 Score=318.71 Aligned_cols=147 Identities=20% Similarity=0.112 Sum_probs=98.3
Q ss_pred CchHHhhcccccceeecccccccCcCccccccc-----ccCCceeecCCCccccc----cCcccCCCCCccEEEccCccc
Q 047985 477 IPSWICNLSNRLESLDLSYNNLSGLLPQCLGNF-----SDWLSILDLQHNKFSGT----IPDNLLKGNILKVIDLSDNLL 547 (930)
Q Consensus 477 ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~-----~~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l 547 (930)
++..+..+ ++|++|++++|.+++..+..+... + .|++|++++|.+++. ++..+..+++|++|++++|.+
T Consensus 276 l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 353 (461)
T 1z7x_W 276 LCRVLRAK-ESLKELSLAGNELGDEGARLLCETLLEPGC-QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 353 (461)
T ss_dssp HHHHHHHC-TTCCEEECTTCCCHHHHHHHHHHHHTSTTC-CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBC
T ss_pred HHHHHhhC-CCcceEECCCCCCchHHHHHHHHHhccCCc-cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcc
Confidence 45555555 677788888877765444333322 3 388888888887754 455566678888888888888
Q ss_pred cccCCccccC-----CCCCcEecccCccccc----cCcccccCCCCCcEEEccCCcccccCCCCCc---cCCCCCceEEE
Q 047985 548 QGRIPRSLAN-----CSNLEFLDLGDNQIRD----IFPSWLGTLPDLNVLILKSNKFHGLIREPKT---DCGFPKLRIID 615 (930)
Q Consensus 548 ~~~~p~~l~~-----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~---~~~l~~L~~Ld 615 (930)
++..+..+.. .++|++|++++|++++ .+|..+..+++|++|+|++|++++.....+. .....+|+.|+
T Consensus 354 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~ 433 (461)
T 1z7x_W 354 EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 433 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEE
T ss_pred ccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhhee
Confidence 7655544432 6788888888888886 6777788888888888888888754111110 01234688888
Q ss_pred CCCCcCcccC
Q 047985 616 LSKNRFTGKL 625 (930)
Q Consensus 616 Ls~N~l~g~i 625 (930)
+.++.+....
T Consensus 434 ~~~~~~~~~~ 443 (461)
T 1z7x_W 434 LYDIYWSEEM 443 (461)
T ss_dssp CTTCCCCHHH
T ss_pred ecccccCHHH
Confidence 8887776433
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=3.6e-28 Score=268.09 Aligned_cols=106 Identities=24% Similarity=0.338 Sum_probs=56.4
Q ss_pred CCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecc
Q 047985 247 SLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVY 326 (930)
Q Consensus 247 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 326 (930)
.|++|++++|.+++..+..|+++++|++|+|++|++++..|..|.++++|++|++++|.++ .+|..+. ++|++|+++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECC
Confidence 4444444444444433334445555555555555555444555555555555555555554 2333332 456666666
Q ss_pred cccccCCCcccccCCCCCCEEEccCCCCC
Q 047985 327 ECKFSGQIPSSLSNLTHLSFLDFSLNNFS 355 (930)
Q Consensus 327 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 355 (930)
+|.+++..+..+..+++|++|++++|.+.
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 158 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLK 158 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCC
Confidence 66666555555666666666666666654
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=5e-28 Score=266.91 Aligned_cols=269 Identities=20% Similarity=0.198 Sum_probs=217.3
Q ss_pred CCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCC
Q 047985 94 VHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKL 173 (930)
Q Consensus 94 ~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l 173 (930)
++|++|+|++|.+++. .+..++++++|++|+|++|.+++..|..++++++|++|++++|.+. .+|..+ .
T Consensus 52 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--------~l~~~~--~ 120 (330)
T 1xku_A 52 PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK--------ELPEKM--P 120 (330)
T ss_dssp TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS--------BCCSSC--C
T ss_pred CCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC--------ccChhh--c
Confidence 6899999999999864 4557999999999999999999888999999999999999999652 223222 2
Q ss_pred CCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCC--CCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEE
Q 047985 174 TNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRG--RIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKEL 251 (930)
Q Consensus 174 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 251 (930)
++|++|++++|.+++..+..+.++++|++|++++|.+.. ..+..+.++++|++|++++|.++. +|..+. ++|++|
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L 197 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTEL 197 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEE
T ss_pred ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEE
Confidence 789999999999998888889999999999999998863 667788899999999999999875 344333 789999
Q ss_pred EccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeeccccccc
Q 047985 252 DLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFS 331 (930)
Q Consensus 252 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~ 331 (930)
++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++
T Consensus 198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC
Confidence 99999998877888999999999999999998877778889999999999999988 67888888999999999999998
Q ss_pred CCCcccccC------CCCCCEEEccCCCCCC-CCchhHHhhccccccEEEccCC
Q 047985 332 GQIPSSLSN------LTHLSFLDFSLNNFSG-KMDLDIFLVNHKLLYHLFLSTN 378 (930)
Q Consensus 332 ~~~p~~l~~------l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~L~~L~Ls~n 378 (930)
+..+..|.. .+.++.|++++|++.. .++...+ ..+..++.+++++|
T Consensus 277 ~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f-~~~~~l~~l~L~~N 329 (330)
T 1xku_A 277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF-RCVYVRAAVQLGNY 329 (330)
T ss_dssp CCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG-TTCCCGGGEEC---
T ss_pred ccChhhcCCcccccccccccceEeecCcccccccCcccc-ccccceeEEEeccc
Confidence 766655543 3677888888888753 2333333 56677777777766
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=3.9e-28 Score=267.95 Aligned_cols=126 Identities=21% Similarity=0.297 Sum_probs=66.7
Q ss_pred CCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEcc
Q 047985 199 SLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLS 278 (930)
Q Consensus 199 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 278 (930)
+++.++++++.++ .+|..+. ++|++|++++|.+++..|..+.++++|++|++++|.+++..|..|+++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4566666666555 3444332 455666666666555555555555666666666665555555555555555555555
Q ss_pred CCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccc
Q 047985 279 LNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKF 330 (930)
Q Consensus 279 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l 330 (930)
+|+++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcc
Confidence 55554 2333322 4555555555555544333444444444444444444
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=4.7e-28 Score=267.30 Aligned_cols=132 Identities=22% Similarity=0.182 Sum_probs=69.7
Q ss_pred cccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEec
Q 047985 486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLD 565 (930)
Q Consensus 486 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 565 (930)
++|++|++++|.+++..|..+..++. |++|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|++|+
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~ 270 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSK-LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVY 270 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTT-CSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEE
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCC-CCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEE
Confidence 34556666666666555555555553 666666666666555555555566666666666665 4455555666666666
Q ss_pred ccCccccccCcccccC------CCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCC
Q 047985 566 LGDNQIRDIFPSWLGT------LPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKN 619 (930)
Q Consensus 566 Ls~N~l~~~~p~~l~~------l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N 619 (930)
+++|++++..+..|.. .+.|+.|++++|++......+..+..++.|+.+++++|
T Consensus 271 l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 271 LHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred CCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 6666666555544443 23455555555555421111122234555555555554
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=6.2e-31 Score=314.67 Aligned_cols=465 Identities=15% Similarity=0.141 Sum_probs=229.0
Q ss_pred CCCcccceEecCCCCcEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCC--CCCchhc------------cCCC
Q 047985 54 DCCSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDG--SEIPPEI------------INLS 119 (930)
Q Consensus 54 ~~C~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~--~~ip~~l------------~~l~ 119 (930)
-|++|.++.+... ..+.+.+. ...... ..+.++++|++|+|+++.... ..+|..+ ..++
T Consensus 40 vck~W~~~~~~~~----~~l~~~~~-~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 112 (592)
T 3ogk_B 40 VCRRWFKIDSETR----EHVTMALC-YTATPD--RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLR 112 (592)
T ss_dssp SCHHHHHHHHHHC----CEEEESCG-GGSCHH--HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCT
T ss_pred HhHHHHHhhhccc----cEEEEeec-cccChH--HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCC
Confidence 3458999965321 22333322 122222 256678999999998753210 0122222 2678
Q ss_pred CCCEEEccCCCCCccCCccccCC-C-CCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCC----Cchh
Q 047985 120 SLSYLNLSSAAFSGQIPSEILEL-S-KLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSP----IPHN 193 (930)
Q Consensus 120 ~L~~L~Ls~n~l~~~~p~~l~~l-~-~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~----~~~~ 193 (930)
+|++|+|++|.+++..+..++.. + +|++|++++|. .+....++....++++|++|++++|.+++. ++..
T Consensus 113 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~-----~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~ 187 (592)
T 3ogk_B 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS-----GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187 (592)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE-----EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred CCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC-----CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence 88888888888877666666553 3 48888888773 111223444455677777777777766544 2223
Q ss_pred ccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCC
Q 047985 194 LTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLE 273 (930)
Q Consensus 194 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 273 (930)
...+++|++|++++|.+++... +.++..+.++++|++|++++|.+.+ +|..+..+++|+
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~--------------------~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~ 246 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISP--------------------KDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLE 246 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCH--------------------HHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCC
T ss_pred HhcCCCccEEEeeccCCCccCH--------------------HHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHH
Confidence 3444555555555555542111 1223333444555555555555443 444555555555
Q ss_pred EEEccCCCCC---CCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCc-ccccCCCCCCEEEc
Q 047985 274 QVDLSLNRFL---GKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIP-SSLSNLTHLSFLDF 349 (930)
Q Consensus 274 ~L~Ls~n~l~---~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L 349 (930)
+|+++..... +..+..+..+++|+.|+++++. .+.+|..+..+++|++|++++|.+++... ..+..+++|++|++
T Consensus 247 ~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L 325 (592)
T 3ogk_B 247 EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET 325 (592)
T ss_dssp EEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEE
T ss_pred hhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEec
Confidence 5555432211 1223445555666666666542 23455555666666666666666543322 23456666777766
Q ss_pred cCCCCCCCCchhHHhhccccccEEEccC-----------CcccccccccCCCCccccceeeeccCCCCCcchhhhcCCCc
Q 047985 350 SLNNFSGKMDLDIFLVNHKLLYHLFLST-----------NRLSLLTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHL 418 (930)
Q Consensus 350 s~n~l~~~~~~~~~~~~~~~L~~L~Ls~-----------n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~~L 418 (930)
+ +.+.... ...+...+++|++|++++ +.+... .++.....+++|
T Consensus 326 ~-~~~~~~~-l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~-----------------------~~~~l~~~~~~L 380 (592)
T 3ogk_B 326 R-NVIGDRG-LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR-----------------------GLIALAQGCQEL 380 (592)
T ss_dssp E-GGGHHHH-HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH-----------------------HHHHHHHHCTTC
T ss_pred c-CccCHHH-HHHHHHhCCCCCEEEeecCccccccccccCccCHH-----------------------HHHHHHhhCccC
Confidence 6 3322111 112224455666666652 111100 122233446666
Q ss_pred CEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCC-----CchHHhhcccccceeec
Q 047985 419 ELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGE-----IPSWICNLSNRLESLDL 493 (930)
Q Consensus 419 ~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~-----ip~~~~~~~~~L~~L~L 493 (930)
++|+++.|.+++..+..+.. .+++|+.|+++.+. ..|.+++. ++..+..+ ++|+.|++
T Consensus 381 ~~L~l~~~~l~~~~~~~l~~-~~~~L~~L~l~~~~---------------~~n~l~~~p~~~~~~~~~~~~-~~L~~L~L 443 (592)
T 3ogk_B 381 EYMAVYVSDITNESLESIGT-YLKNLCDFRLVLLD---------------REERITDLPLDNGVRSLLIGC-KKLRRFAF 443 (592)
T ss_dssp SEEEEEESCCCHHHHHHHHH-HCCSCCEEEEEECS---------------CCSCCSSCCCHHHHHHHHHHC-TTCCEEEE
T ss_pred eEEEeecCCccHHHHHHHHh-hCCCCcEEEEeecC---------------CCccccCchHHHHHHHHHHhC-CCCCEEEE
Confidence 66666655555433333220 13444444443110 01222221 22223333 45555555
Q ss_pred cccc--ccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccc-cCCccccCCCCCcEecccCcc
Q 047985 494 SYNN--LSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQG-RIPRSLANCSNLEFLDLGDNQ 570 (930)
Q Consensus 494 s~N~--l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~ 570 (930)
++|. +++..+..+.. .+++|++|++++|++++ .++..+..+++|++|+|++|.
T Consensus 444 ~~~~~~l~~~~~~~~~~------------------------~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 444 YLRQGGLTDLGLSYIGQ------------------------YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp ECCGGGCCHHHHHHHHH------------------------SCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred ecCCCCccHHHHHHHHH------------------------hCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence 4322 33332222222 13445555555555544 223334556666666666666
Q ss_pred cccc-CcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCC
Q 047985 571 IRDI-FPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKN 619 (930)
Q Consensus 571 l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N 619 (930)
+++. ++..+..+++|++|+|++|+++........ ..++.+....+..+
T Consensus 500 l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~-~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 500 FSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQ-MARPYWNIELIPSR 548 (592)
T ss_dssp CBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGG-GCCTTEEEEEECCC
T ss_pred CcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHH-HhCCCcEEEEecCc
Confidence 6544 233334566666666666666544222221 24566665555544
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=7.4e-28 Score=268.15 Aligned_cols=282 Identities=18% Similarity=0.182 Sum_probs=232.0
Q ss_pred CCCCCcccceEecCCCCcEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCC
Q 047985 52 NIDCCSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAF 131 (930)
Q Consensus 52 ~~~~C~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l 131 (930)
...+|.|.|+ |+ ++++.++. ++. .+ .++|++|++++|.+++. .+..+.++++|++|+|++|.+
T Consensus 26 ~~~~C~~~~~-c~----------~~~~~l~~-iP~--~~--~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l 88 (353)
T 2z80_A 26 ASLSCDRNGI-CK----------GSSGSLNS-IPS--GL--TEAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGI 88 (353)
T ss_dssp -CCEECTTSE-EE----------CCSTTCSS-CCT--TC--CTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCC
T ss_pred cCCCCCCCeE-ee----------CCCCCccc-ccc--cc--cccCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCcc
Confidence 4567999998 74 34555542 332 23 25899999999999864 344799999999999999999
Q ss_pred CccCCccccCCCCCcEEEccCCCCCCCccccCCchh-hhhhCCCCCCEEEcCCccCCCCCc-hhccCCCCCCEEEccCC-
Q 047985 132 SGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLG-NLADKLTNLKELVLGDVTISSPIP-HNLTYLSSLTTLSLSGC- 208 (930)
Q Consensus 132 ~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~-~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n- 208 (930)
++..|..++++++|++|++++|.+ ..++ ..+.++++|++|++++|.+++..+ ..+.++++|++|++++|
T Consensus 89 ~~~~~~~~~~l~~L~~L~Ls~n~l--------~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~ 160 (353)
T 2z80_A 89 NTIEEDSFSSLGSLEHLDLSYNYL--------SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160 (353)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCC--------SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred CccCHhhcCCCCCCCEEECCCCcC--------CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc
Confidence 988888899999999999999965 2333 448899999999999999987555 57899999999999999
Q ss_pred CCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCC
Q 047985 209 DLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPS 288 (930)
Q Consensus 209 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 288 (930)
.+....+..+.++++|++|++++|.+++..|..+..+++|++|++++|.++...+..+..+++|+.|++++|++++..+.
T Consensus 161 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 240 (353)
T 2z80_A 161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS 240 (353)
T ss_dssp SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC
T ss_pred cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccc
Confidence 47766678899999999999999999998899999999999999999999744334456789999999999999876655
Q ss_pred CCC---CCcCCcEEEccCCCCCC----ccCcccccccccceeecccccccCCCccc-ccCCCCCCEEEccCCCCCCCCc
Q 047985 289 SLG---NLTQLHWLSLASNDFSG----ELPASFGNLRSLRTLDVYECKFSGQIPSS-LSNLTHLSFLDFSLNNFSGKMD 359 (930)
Q Consensus 289 ~l~---~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~~ 359 (930)
.+. ..+.++.++++++.+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++.+..+
T Consensus 241 ~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 241 ELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp ------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 443 46778999999999886 46778889999999999999998 45555 5889999999999999998765
No 52
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=2.3e-28 Score=267.12 Aligned_cols=248 Identities=22% Similarity=0.247 Sum_probs=206.8
Q ss_pred CcceEEeccCcCCCCCchHHhhcccccceeecccccc-cCcCccccc-------ccccCCceeecCCCccccccCccc--
Q 047985 462 NTVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNL-SGLLPQCLG-------NFSDWLSILDLQHNKFSGTIPDNL-- 531 (930)
Q Consensus 462 ~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l-~~~~p~~l~-------~~~~~L~~L~Ls~N~l~~~~p~~~-- 531 (930)
+++.+++++|.+ .+|..+... |+.|++++|++ .+.+|..+. .+++ |++|+|++|++++.+|..+
T Consensus 44 ~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 44 SLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISG-LQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp ECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSC-CCEEEEEEEBCBSCCCCCSSS
T ss_pred CceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCC-ccEEEccCCcccchhHHHHHH
Confidence 456667777777 788877654 89999999999 456776655 5775 9999999999999999886
Q ss_pred CCCCCccEEEccCccccccCCccccCC-----CCCcEecccCccccccCcccccCCCCCcEEEccCCcccccC--CCCCc
Q 047985 532 LKGNILKVIDLSDNLLQGRIPRSLANC-----SNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLI--REPKT 604 (930)
Q Consensus 532 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~--~~~~~ 604 (930)
..+++|++|+|++|++++. |..+..+ ++|++|++++|++++..|..|+.+++|++|+|++|++.+.+ +....
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 8899999999999999987 8877776 99999999999999999999999999999999999987753 22333
Q ss_pred cCCCCCceEEECCCCcCcc--cCChHHHhhcccceeccccccccccccccCCCCCccceeeeEeeecccccccccccccc
Q 047985 605 DCGFPKLRIIDLSKNRFTG--KLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDIL 682 (930)
Q Consensus 605 ~~~l~~L~~LdLs~N~l~g--~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 682 (930)
+..+++|++|++++|++++ .++...+. ..+.|
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~----------------------------------------------~l~~L 230 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAA----------------------------------------------ARVQL 230 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHH----------------------------------------------TTCCC
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHh----------------------------------------------cCCCC
Confidence 3678999999999999973 22222111 13458
Q ss_pred cEEEcccccccccCc-hhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCC
Q 047985 683 TAVILSSNRFDGEIP-TSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSD 761 (930)
Q Consensus 683 ~~L~Ls~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~ 761 (930)
+.|+|++|++++.+| ..+..+++|+.|+|++|+++ .+|..+. ++|+.|||++|++++. |. +..+++|++|++++
T Consensus 231 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKG 305 (312)
T ss_dssp SEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTT
T ss_pred CEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccC
Confidence 999999999999886 55677899999999999999 8898887 8999999999999987 66 89999999999999
Q ss_pred Cccccc
Q 047985 762 NHFTGP 767 (930)
Q Consensus 762 N~L~g~ 767 (930)
|+++++
T Consensus 306 N~l~~~ 311 (312)
T 1wwl_A 306 NPFLDS 311 (312)
T ss_dssp CTTTCC
T ss_pred CCCCCC
Confidence 999863
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=2.2e-27 Score=258.78 Aligned_cols=251 Identities=24% Similarity=0.307 Sum_probs=171.7
Q ss_pred CcccceEecCCCCcEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCch-hccCCCCCCEEEccCCCCC--
Q 047985 56 CSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPP-EIINLSSLSYLNLSSAAFS-- 132 (930)
Q Consensus 56 C~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~-~l~~l~~L~~L~Ls~n~l~-- 132 (930)
|.|++|.|... .++ .++. .+ .++|++|+|++|.++. +|. .+.++++|++|+|++|.++
T Consensus 7 C~~~~l~c~~~------------~l~-~ip~--~~--~~~l~~L~L~~n~l~~--i~~~~~~~l~~L~~L~L~~n~l~~~ 67 (306)
T 2z66_A 7 CSGTEIRCNSK------------GLT-SVPT--GI--PSSATRLELESNKLQS--LPHGVFDKLTQLTKLSLSSNGLSFK 67 (306)
T ss_dssp EETTEEECCSS------------CCS-SCCS--CC--CTTCCEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCCCEE
T ss_pred eCCCEEEcCCC------------Ccc-cCCC--CC--CCCCCEEECCCCccCc--cCHhHhhccccCCEEECCCCccCcc
Confidence 89999999643 121 1111 11 2467777777777763 443 3567777777777777766
Q ss_pred ccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCc-hhccCCCCCCEEEccCCCCC
Q 047985 133 GQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIP-HNLTYLSSLTTLSLSGCDLR 211 (930)
Q Consensus 133 ~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~ 211 (930)
+..|..+..+++|++|++++|.+ ..++..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 68 ~~~~~~~~~~~~L~~L~Ls~n~i--------~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 139 (306)
T 2z66_A 68 GCCSQSDFGTTSLKYLDLSFNGV--------ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 139 (306)
T ss_dssp EEEEHHHHSCSCCCEEECCSCSE--------EEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE
T ss_pred cCcccccccccccCEEECCCCcc--------ccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCC
Confidence 22355566677777777777743 2344556667777777777777766554 56677777777777777777
Q ss_pred CCCcccccCCCCCcEEEccCCCCCC-chhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCC
Q 047985 212 GRIPSSLGNITRLIHLDLSFNKLSD-ELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSL 290 (930)
Q Consensus 212 ~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l 290 (930)
+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+
T Consensus 140 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 219 (306)
T 2z66_A 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219 (306)
T ss_dssp ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG
T ss_pred ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhc
Confidence 6666677777777777777777765 456667777777777777777776667777777777777777777776666667
Q ss_pred CCCcCCcEEEccCCCCCCccCccccccc-ccceeecccccccCC
Q 047985 291 GNLTQLHWLSLASNDFSGELPASFGNLR-SLRTLDVYECKFSGQ 333 (930)
Q Consensus 291 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~ 333 (930)
..+++|++|++++|.+++..|..+..++ +|++|++++|.+++.
T Consensus 220 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 7777777777777777777777777763 777777777777654
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=7.1e-29 Score=296.78 Aligned_cols=391 Identities=14% Similarity=0.127 Sum_probs=256.9
Q ss_pred hhhhhCCCCCCEEEcCCccCCCCCchhccCC-C-CCCEEEccCCC-CCC-CCcccccCCCCCcEEEccCCCCCCc----h
Q 047985 167 GNLADKLTNLKELVLGDVTISSPIPHNLTYL-S-SLTTLSLSGCD-LRG-RIPSSLGNITRLIHLDLSFNKLSDE----L 238 (930)
Q Consensus 167 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~-~L~~L~L~~n~-l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~----~ 238 (930)
+.....+++|++|++++|.+++..+..+... + +|++|+|++|. ++. .++....++++|++|++++|.+++. +
T Consensus 105 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l 184 (592)
T 3ogk_B 105 TEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWL 184 (592)
T ss_dssp HHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHH
T ss_pred HHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHH
Confidence 3444578888888888887777666666553 3 48888888876 211 1222234778899999998887665 5
Q ss_pred hhhhcCCCCCCEEEccCCCCCC----CcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCC---CccC
Q 047985 239 PTFIGTLGSLKELDLLQNNLSG----ELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFS---GELP 311 (930)
Q Consensus 239 p~~l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~---~~~p 311 (930)
+..+..+++|++|++++|.+++ .++..+.++++|++|++++|.+.+ +|..+.++++|++|+++..... +..+
T Consensus 185 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 263 (592)
T 3ogk_B 185 HELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKY 263 (592)
T ss_dssp HHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSS
T ss_pred HHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHH
Confidence 5566778899999999998873 445556788999999999988775 5677888889999998864332 2344
Q ss_pred cccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCC
Q 047985 312 ASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTT 391 (930)
Q Consensus 312 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 391 (930)
..+..+++|+.|+++++. .+.+|..+..+++|++|++++|.+++..... ....+++|+.|+++++ +...
T Consensus 264 ~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~-~~~~~~~L~~L~L~~~-~~~~-------- 332 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCT-LIQKCPNLEVLETRNV-IGDR-------- 332 (592)
T ss_dssp SCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHH-HHTTCTTCCEEEEEGG-GHHH--------
T ss_pred HHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHH-HHHhCcCCCEEeccCc-cCHH--------
Confidence 566777888888887753 3456677777888888888888755332222 2256666666666622 1110
Q ss_pred ccccceeeeccCCCCCcchhhhcCCCcCEEeCCC---CCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEe
Q 047985 392 SHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLAS---NKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLV 468 (930)
Q Consensus 392 ~~~L~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~---N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~l 468 (930)
.++.....+++|++|++++ +.... . . .
T Consensus 333 ---------------~l~~~~~~~~~L~~L~L~~g~~~~~~~----~----~----------~----------------- 362 (592)
T 3ogk_B 333 ---------------GLEVLAQYCKQLKRLRIERGADEQGME----D----E----------E----------------- 362 (592)
T ss_dssp ---------------HHHHHHHHCTTCCEEEEECCCCSSTTS----S----T----------T-----------------
T ss_pred ---------------HHHHHHHhCCCCCEEEeecCccccccc----c----c----------c-----------------
Confidence 2333445566777777763 00000 0 0 0
Q ss_pred ccCcCCCC-CchHHhhcccccceeecccccccCcCcccccc-cccCCceeecC----CCccccc-----cCcccCCCCCc
Q 047985 469 SNNSLTGE-IPSWICNLSNRLESLDLSYNNLSGLLPQCLGN-FSDWLSILDLQ----HNKFSGT-----IPDNLLKGNIL 537 (930)
Q Consensus 469 s~n~l~g~-ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~-~~~~L~~L~Ls----~N~l~~~-----~p~~~~~l~~L 537 (930)
+.+++. ++.....+ ++|++|+++.|++++..+..+.. +++ |+.|+++ .|.+++. ++..+..+++|
T Consensus 363 --~~~~~~~~~~l~~~~-~~L~~L~l~~~~l~~~~~~~l~~~~~~-L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L 438 (592)
T 3ogk_B 363 --GLVSQRGLIALAQGC-QELEYMAVYVSDITNESLESIGTYLKN-LCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL 438 (592)
T ss_dssp --CCCCHHHHHHHHHHC-TTCSEEEEEESCCCHHHHHHHHHHCCS-CCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTC
T ss_pred --CccCHHHHHHHHhhC-ccCeEEEeecCCccHHHHHHHHhhCCC-CcEEEEeecCCCccccCchHHHHHHHHHHhCCCC
Confidence 111111 11112223 66777777777776665555554 553 7777774 5666642 33345667889
Q ss_pred cEEEccCcc--ccccCCccc-cCCCCCcEecccCcccccc-CcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceE
Q 047985 538 KVIDLSDNL--LQGRIPRSL-ANCSNLEFLDLGDNQIRDI-FPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRI 613 (930)
Q Consensus 538 ~~L~Ls~N~--l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 613 (930)
++|+++.|. +++..+..+ ..+++|+.|++++|++++. ++..+..+++|++|+|++|++++...... ...+++|+.
T Consensus 439 ~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~ 517 (592)
T 3ogk_B 439 RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAA-VTKLPSLRY 517 (592)
T ss_dssp CEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHH-HHHCSSCCE
T ss_pred CEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHH-HHhcCccCe
Confidence 999997543 666555444 3489999999999999874 55667889999999999999865422221 135789999
Q ss_pred EECCCCcCccc
Q 047985 614 IDLSKNRFTGK 624 (930)
Q Consensus 614 LdLs~N~l~g~ 624 (930)
|+|++|++++.
T Consensus 518 L~ls~n~it~~ 528 (592)
T 3ogk_B 518 LWVQGYRASMT 528 (592)
T ss_dssp EEEESCBCCTT
T ss_pred eECcCCcCCHH
Confidence 99999999865
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.2e-26 Score=254.88 Aligned_cols=283 Identities=20% Similarity=0.278 Sum_probs=212.4
Q ss_pred CCCCCCCCCCCCCCCCcccceEecCCCCcEEEEEcCCCCCcccc----cCcccccCCCCCCEEECCCCCCCCCCCchhcc
Q 047985 41 KAASWKPEEGNNIDCCSWDGVQCNENTGHVIKLDLSSSCLQGSI----NSSSSLFKLVHLEWLDLAFNDFDGSEIPPEII 116 (930)
Q Consensus 41 ~l~~W~~~~~~~~~~C~w~gv~C~~~~~~v~~L~L~~~~l~g~~----~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~ 116 (930)
++..|+... ..|+|.|.++.|....+. -..+...|.. +....-...+++++|+|++|.+. .+|..++
T Consensus 31 aLl~~k~~~--~~~~~~~~~~w~~~~~~~-----~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~--~lp~~l~ 101 (328)
T 4fcg_A 31 VLSQWQRHY--NADRNRWHSAWRQANSNN-----PQIETRTGRALKATADLLEDATQPGRVALELRSVPLP--QFPDQAF 101 (328)
T ss_dssp HHHHHHHHH--HHCCTTHHHHHHHHTTTC-----TTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS--SCCSCGG
T ss_pred HHHHHHHhc--cCCchhhhhhhccccccc-----ccccccCCcchhhhHHHHhcccccceeEEEccCCCch--hcChhhh
Confidence 466776410 247899999998432110 0111222210 00001123467777777777776 3676777
Q ss_pred CCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccC
Q 047985 117 NLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTY 196 (930)
Q Consensus 117 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 196 (930)
++++|++|+|++|.++ .+|..++++++|++|++++| .++ .+|..+++
T Consensus 102 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n-------------------------------~l~-~lp~~l~~ 148 (328)
T 4fcg_A 102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARN-------------------------------PLR-ALPASIAS 148 (328)
T ss_dssp GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESC-------------------------------CCC-CCCGGGGG
T ss_pred hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCC-------------------------------ccc-cCcHHHhc
Confidence 7777777777777777 67766777777777666666 333 45667777
Q ss_pred CCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEE
Q 047985 197 LSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVD 276 (930)
Q Consensus 197 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 276 (930)
+++|++|++++|++.+.+|..+... . .+..+..+++|++|++++|.++ .+|..++.+++|++|+
T Consensus 149 l~~L~~L~L~~n~~~~~~p~~~~~~------~---------~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~ 212 (328)
T 4fcg_A 149 LNRLRELSIRACPELTELPEPLAST------D---------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLK 212 (328)
T ss_dssp CTTCCEEEEEEETTCCCCCSCSEEE------C----------CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEE
T ss_pred CcCCCEEECCCCCCccccChhHhhc------c---------chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEE
Confidence 8888888888887777777655431 1 1223567899999999999998 8899999999999999
Q ss_pred ccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCC
Q 047985 277 LSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSG 356 (930)
Q Consensus 277 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 356 (930)
|++|++++ +|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|++.+.+|..+..+++|++|++++|++.+
T Consensus 213 L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 213 IRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291 (328)
T ss_dssp EESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred ccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh
Confidence 99999985 66679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHhhccccccEEEccCCcccccc
Q 047985 357 KMDLDIFLVNHKLLYHLFLSTNRLSLLT 384 (930)
Q Consensus 357 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 384 (930)
.+|... .++++|+.+++..+.+....
T Consensus 292 ~iP~~l--~~L~~L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 292 RLPSLI--AQLPANCIILVPPHLQAQLD 317 (328)
T ss_dssp CCCGGG--GGSCTTCEEECCGGGSCC--
T ss_pred hccHHH--hhccCceEEeCCHHHHHHHh
Confidence 999654 78999999999988654443
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=1.5e-26 Score=252.18 Aligned_cols=257 Identities=23% Similarity=0.269 Sum_probs=223.2
Q ss_pred CEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCC
Q 047985 97 EWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNL 176 (930)
Q Consensus 97 ~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L 176 (930)
+.++++++.++. +|..+. ++|++|+|++|.++...+..++++++|++|++++|.+.. .+..+..+..+++|
T Consensus 10 ~~l~c~~~~l~~--ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~~~~~~L 80 (306)
T 2z66_A 10 TEIRCNSKGLTS--VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF-----KGCCSQSDFGTTSL 80 (306)
T ss_dssp TEEECCSSCCSS--CCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCE-----EEEEEHHHHSCSCC
T ss_pred CEEEcCCCCccc--CCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCc-----ccCccccccccccc
Confidence 578888888864 566443 799999999999995444457999999999999996421 12235667789999
Q ss_pred CEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCc-ccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccC
Q 047985 177 KELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIP-SSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQ 255 (930)
Q Consensus 177 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 255 (930)
++|++++|.+.. +|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 81 ~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 159 (306)
T 2z66_A 81 KYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159 (306)
T ss_dssp CEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCC
Confidence 999999999875 66778999999999999999987655 5789999999999999999988899999999999999999
Q ss_pred CCCCC-CcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCC
Q 047985 256 NNLSG-ELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQI 334 (930)
Q Consensus 256 n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 334 (930)
|.+++ .+|..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..
T Consensus 160 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 239 (306)
T 2z66_A 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239 (306)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS
T ss_pred CccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccC
Confidence 99987 57889999999999999999999888999999999999999999999887778999999999999999999999
Q ss_pred cccccCCC-CCCEEEccCCCCCCCCchhHH
Q 047985 335 PSSLSNLT-HLSFLDFSLNNFSGKMDLDIF 363 (930)
Q Consensus 335 p~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~ 363 (930)
|..+..++ +|++|++++|++++..+...+
T Consensus 240 ~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~ 269 (306)
T 2z66_A 240 KQELQHFPSSLAFLNLTQNDFACTCEHQSF 269 (306)
T ss_dssp SSSCCCCCTTCCEEECTTCCEECSGGGHHH
T ss_pred HHHHHhhhccCCEEEccCCCeecccChHHH
Confidence 99999984 999999999999987665444
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=7.1e-27 Score=260.21 Aligned_cols=280 Identities=16% Similarity=0.186 Sum_probs=211.1
Q ss_pred CCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCCCCchHHhhcccccceeecc
Q 047985 415 QHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTGEIPSWICNLSNRLESLDLS 494 (930)
Q Consensus 415 ~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls 494 (930)
|+.....+++++.++ .+|..+. ++|++|++++|++ ++..+..+..+ ++|++|+++
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~----~~L~~L~l~~n~i-------------------~~~~~~~~~~l-~~L~~L~L~ 84 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT----EAVKSLDLSNNRI-------------------TYISNSDLQRC-VNLQALVLT 84 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC----TTCCEEECTTSCC-------------------CEECTTTTTTC-TTCCEEECT
T ss_pred CCCCeEeeCCCCCcc-ccccccc----ccCcEEECCCCcC-------------------cccCHHHhccC-CCCCEEECC
Confidence 444455666666665 3444332 3555555555544 43333355556 789999999
Q ss_pred cccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCC-ccccCCCCCcEecccCc-ccc
Q 047985 495 YNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIP-RSLANCSNLEFLDLGDN-QIR 572 (930)
Q Consensus 495 ~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N-~l~ 572 (930)
+|++++..|..+..+++ |++|++++|++++..+..+..+++|++|++++|++++..+ ..+.++++|++|++++| .+.
T Consensus 85 ~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~ 163 (353)
T 2z80_A 85 SNGINTIEEDSFSSLGS-LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT 163 (353)
T ss_dssp TSCCCEECTTTTTTCTT-CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred CCccCccCHhhcCCCCC-CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc
Confidence 99988877888888885 9999999999886555558888899999999999886544 47888999999999988 577
Q ss_pred ccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceecccccccccccccc
Q 047985 573 DIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIP 652 (930)
Q Consensus 573 ~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~ 652 (930)
+..+..+..+++|++|++++|++.+..|..+ ..+++|++|++++|.++ .+|...+..
T Consensus 164 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~l~-~~~~~~~~~-------------------- 220 (353)
T 2z80_A 164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSL--KSIQNVSHLILHMKQHI-LLLEIFVDV-------------------- 220 (353)
T ss_dssp EECTTTTTTCCEEEEEEEEETTCCEECTTTT--TTCSEEEEEEEECSCST-THHHHHHHH--------------------
T ss_pred ccCHHHccCCCCCCEEECCCCCcCccCHHHH--hccccCCeecCCCCccc-cchhhhhhh--------------------
Confidence 7777888889999999999999888876665 67888999999999875 444332221
Q ss_pred CCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcc---cccccceeeccCccccc----cCccccc
Q 047985 653 FNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSIS---NLKGLQILSLADNSLHG----HIPSCLG 725 (930)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~---~l~~L~~L~Ls~N~l~g----~ip~~l~ 725 (930)
++.|+.|++++|.+++..+..+. ....++.++|++|.+++ .+|..++
T Consensus 221 --------------------------~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~ 274 (353)
T 2z80_A 221 --------------------------TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN 274 (353)
T ss_dssp --------------------------TTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHH
T ss_pred --------------------------cccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHh
Confidence 34588899999999877665543 35677888888888877 5788899
Q ss_pred ccCCCCeeeCCCCcCcccCCcc-ccCCCCCCeeecCCCcccccCCC
Q 047985 726 NLTDLESLDLSNNRFSGQIPQQ-LVELTFLEFFNVSDNHFTGPIPQ 770 (930)
Q Consensus 726 ~L~~L~~LdLs~N~lsg~ip~~-l~~L~~L~~L~ls~N~L~g~iP~ 770 (930)
++++|+.|||++|+++ .+|.. |..+++|++|++++|++.+..|.
T Consensus 275 ~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 275 QISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred cccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 9999999999999999 56666 58999999999999999987773
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=8.1e-26 Score=260.47 Aligned_cols=237 Identities=22% Similarity=0.229 Sum_probs=205.9
Q ss_pred CCchHHhhcccccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccc
Q 047985 476 EIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSL 555 (930)
Q Consensus 476 ~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 555 (930)
.+|..+. +++++|+|++|++++..|..|..++. |++|+|++|++++..|..+..+++|++|+|++|++++..+..|
T Consensus 68 ~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~-L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 143 (452)
T 3zyi_A 68 EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHH-LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAF 143 (452)
T ss_dssp SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTT-CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTS
T ss_pred ccCCCCC---CCccEEECcCCcCceECHHHcCCCCC-CCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhh
Confidence 4554332 67999999999999888889999986 9999999999998888899999999999999999998888889
Q ss_pred cCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhccc
Q 047985 556 ANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNA 635 (930)
Q Consensus 556 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~ 635 (930)
..+++|++|+|++|+++.+.+..|..+++|+.|+|++|+..+.++.. .+.++++|++|+|++|++++ +|. +
T Consensus 144 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~l~~-~~~--~----- 214 (452)
T 3zyi_A 144 EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG-AFEGLFNLKYLNLGMCNIKD-MPN--L----- 214 (452)
T ss_dssp SSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCTTCCEEECTTSCCSS-CCC--C-----
T ss_pred cccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh-hccCCCCCCEEECCCCcccc-ccc--c-----
Confidence 99999999999999999888888999999999999996554444432 23678999999999999874 331 0
Q ss_pred ceeccccccccccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCcc
Q 047985 636 MKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNS 715 (930)
Q Consensus 636 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 715 (930)
..+..|+.|+|++|++++..|..|.++++|+.|+|++|+
T Consensus 215 -----------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 253 (452)
T 3zyi_A 215 -----------------------------------------TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253 (452)
T ss_dssp -----------------------------------------TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC
T ss_pred -----------------------------------------cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc
Confidence 013568999999999999999999999999999999999
Q ss_pred ccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccc
Q 047985 716 LHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTG 766 (930)
Q Consensus 716 l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g 766 (930)
+++..|..|+++++|+.|||++|++++..+..+..+++|+.|++++|++..
T Consensus 254 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 254 VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred CceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 999999999999999999999999998888889999999999999999864
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=7.1e-28 Score=263.22 Aligned_cols=180 Identities=22% Similarity=0.206 Sum_probs=121.7
Q ss_pred hCCCCCCEEEcCCccCCCCCchhccCC-----CCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCc--hhhhh-
Q 047985 171 DKLTNLKELVLGDVTISSPIPHNLTYL-----SSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDE--LPTFI- 242 (930)
Q Consensus 171 ~~l~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~p~~l- 242 (930)
..+++|++|++++|.+++. |..++.+ ++|++|++++|++++..|..++++++|++|++++|++.+. .+..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 4455555555555555555 5555444 6777777777777766666777777777777777776654 23344
Q ss_pred -cCCCCCCEEEccCCCCCC--Ccc-hhhcCCCCCCEEEccCCCCCCCCC-CCCCCCcCCcEEEccCCCCCCccCcccccc
Q 047985 243 -GTLGSLKELDLLQNNLSG--ELP-NSIGNLASLEQVDLSLNRFLGKVP-SSLGNLTQLHWLSLASNDFSGELPASFGNL 317 (930)
Q Consensus 243 -~~l~~L~~L~L~~n~l~~--~~p-~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 317 (930)
..+++|++|++++|.+++ .++ ..+..+++|++|++++|++++..| ..+..+++|++|+|++|+++ .+|..+.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-- 273 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence 677777777777777763 122 334567777888888877777664 44566777888888888877 5666665
Q ss_pred cccceeecccccccCCCcccccCCCCCCEEEccCCCCCC
Q 047985 318 RSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSG 356 (930)
Q Consensus 318 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 356 (930)
++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 274 ~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 7788888888888765 54 7778888888888887765
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=1.1e-25 Score=258.34 Aligned_cols=237 Identities=23% Similarity=0.242 Sum_probs=205.7
Q ss_pred CCchHHhhcccccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccc
Q 047985 476 EIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSL 555 (930)
Q Consensus 476 ~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 555 (930)
.+|..+. ++++.|+|++|++++..+..|.++++ |++|+|++|++++..+..+..+++|++|+|++|++++..+..|
T Consensus 57 ~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~-L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 132 (440)
T 3zyj_A 57 EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRH-LEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAF 132 (440)
T ss_dssp SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSS-CCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTS
T ss_pred cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCC-CCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHh
Confidence 5665443 57899999999999888888999886 9999999999998777889999999999999999998877889
Q ss_pred cCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhccc
Q 047985 556 ANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNA 635 (930)
Q Consensus 556 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~ 635 (930)
..+++|++|+|++|+++...+..|..+++|++|+|++|+..+.++.. .+.++++|++|++++|.++ .+|. +
T Consensus 133 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~l~-~~~~--~----- 203 (440)
T 3zyj_A 133 VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMCNLR-EIPN--L----- 203 (440)
T ss_dssp CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCSSCCEEECTTSCCS-SCCC--C-----
T ss_pred hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc-hhhcccccCeecCCCCcCc-cccc--c-----
Confidence 99999999999999999988888999999999999996555444432 2367899999999999987 4441 0
Q ss_pred ceeccccccccccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCcc
Q 047985 636 MKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNS 715 (930)
Q Consensus 636 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 715 (930)
..+..|+.|+|++|++++..|..|.++++|+.|+|++|+
T Consensus 204 -----------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 242 (440)
T 3zyj_A 204 -----------------------------------------TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242 (440)
T ss_dssp -----------------------------------------TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred -----------------------------------------CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc
Confidence 013458999999999999999999999999999999999
Q ss_pred ccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccc
Q 047985 716 LHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTG 766 (930)
Q Consensus 716 l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g 766 (930)
+++..|..|+++++|+.|||++|++++..+..|..+++|+.|++++|++..
T Consensus 243 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 243 IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred eeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 999999999999999999999999998888889999999999999999863
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=7.1e-26 Score=244.08 Aligned_cols=147 Identities=24% Similarity=0.292 Sum_probs=91.2
Q ss_pred cccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCc
Q 047985 215 PSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLT 294 (930)
Q Consensus 215 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 294 (930)
|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..|+.+++|++|++++|++++..+..+..++
T Consensus 98 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 177 (285)
T 1ozn_A 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177 (285)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcc
Confidence 34444455555555555555554455555555555555555555544444556666666666666666655455566666
Q ss_pred CCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCchh
Q 047985 295 QLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLD 361 (930)
Q Consensus 295 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~ 361 (930)
+|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++....+..
T Consensus 178 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~ 244 (285)
T 1ozn_A 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH
Confidence 6667777777666666666666777777777777777655566777777777777777776655443
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=6e-25 Score=253.21 Aligned_cols=253 Identities=24% Similarity=0.219 Sum_probs=190.4
Q ss_pred CCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCC
Q 047985 96 LEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTN 175 (930)
Q Consensus 96 L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~ 175 (930)
.+.++.++..++. +|..+. ++|++|+|++|.+++..|..++++++|++|+|++|.+. ...+..+.++++
T Consensus 56 ~~~v~c~~~~l~~--iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-------~~~~~~~~~l~~ 124 (452)
T 3zyi_A 56 FSKVVCTRRGLSE--VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-------QIEVGAFNGLAS 124 (452)
T ss_dssp SCEEECCSSCCSS--CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-------EECTTTTTTCTT
T ss_pred CcEEEECCCCcCc--cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-------CcChhhccCccc
Confidence 4566666666653 454443 56777777777777666777777777777777777431 122345666777
Q ss_pred CCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCC-CCCCchhhhhcCCCCCCEEEcc
Q 047985 176 LKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFN-KLSDELPTFIGTLGSLKELDLL 254 (930)
Q Consensus 176 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~L~ 254 (930)
|++|++++|.++...+..+.++++|++|+|++|.++...+..|.++++|++|++++| .+....+..+..+++|++|+++
T Consensus 125 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 204 (452)
T 3zyi_A 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204 (452)
T ss_dssp CCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECC
Confidence 777777777777766677788888888888888888666667888888888888884 4443344467888888888888
Q ss_pred CCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCC
Q 047985 255 QNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQI 334 (930)
Q Consensus 255 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 334 (930)
+|.+++. | .+..+++|++|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|++|+|++|++++..
T Consensus 205 ~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 205 MCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP 282 (452)
T ss_dssp TSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC
Confidence 8888743 4 4778888888888888888888888888888888888888888888888888888888888888888777
Q ss_pred cccccCCCCCCEEEccCCCCCCCCchh
Q 047985 335 PSSLSNLTHLSFLDFSLNNFSGKMDLD 361 (930)
Q Consensus 335 p~~l~~l~~L~~L~Ls~n~l~~~~~~~ 361 (930)
+..+..+++|+.|++++|++...-...
T Consensus 283 ~~~~~~l~~L~~L~L~~Np~~CdC~~~ 309 (452)
T 3zyi_A 283 HDLFTPLRYLVELHLHHNPWNCDCDIL 309 (452)
T ss_dssp TTSSTTCTTCCEEECCSSCEECSTTTH
T ss_pred hHHhccccCCCEEEccCCCcCCCCCch
Confidence 777888888999999888887665543
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=1.7e-25 Score=241.23 Aligned_cols=255 Identities=21% Similarity=0.161 Sum_probs=158.3
Q ss_pred EEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEc
Q 047985 71 IKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDL 150 (930)
Q Consensus 71 ~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 150 (930)
+.++.+++.+... +. .-.++|++|+|++|.+++. .+..+..+++|++|+|++|.+.+..|..++.+++|++|++
T Consensus 14 ~~~~c~~~~l~~i-p~----~~~~~l~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 87 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-PV----GIPAASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87 (285)
T ss_dssp CEEECCSSCCSSC-CT----TCCTTCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred eEEEcCcCCcccC-Cc----CCCCCceEEEeeCCcCCcc-CHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence 4566666666532 22 2346889999999988764 4456888889999999999888777888888888888888
Q ss_pred cCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcc
Q 047985 151 SHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLS 230 (930)
Q Consensus 151 s~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 230 (930)
++|.... ...+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 88 ~~n~~l~------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 161 (285)
T 1ozn_A 88 SDNAQLR------SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 161 (285)
T ss_dssp CSCTTCC------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCCCcc------ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECC
Confidence 8884111 1113445566666666666666666666666666666666666666665555556666666666666
Q ss_pred CCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCcc
Q 047985 231 FNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGEL 310 (930)
Q Consensus 231 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 310 (930)
+|.+++..+..+..+++|++|++++|.+++..|..|..+++|+.|++++|++++..+..+..+++|++|++++|.+....
T Consensus 162 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 162 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred CCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence 66666555555666666666666666666555666666666666666666666554455566666666666666655332
Q ss_pred CcccccccccceeecccccccCCCcccc
Q 047985 311 PASFGNLRSLRTLDVYECKFSGQIPSSL 338 (930)
Q Consensus 311 p~~l~~l~~L~~L~L~~n~l~~~~p~~l 338 (930)
+.. .-...++.+..+.+.+....|..+
T Consensus 242 ~~~-~~~~~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 242 RAR-PLWAWLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp GGH-HHHHHHHHCCSEECCCBEEESGGG
T ss_pred CcH-HHHHHHHhcccccCccccCCchHh
Confidence 210 111223334444444444444443
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=1.4e-24 Score=249.14 Aligned_cols=235 Identities=24% Similarity=0.246 Sum_probs=169.3
Q ss_pred CCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCC
Q 047985 94 VHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKL 173 (930)
Q Consensus 94 ~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l 173 (930)
+++++|+|++|.+.+. .+..|.++++|++|+|++|.+.+..+..+.++++|++|+|++|
T Consensus 64 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-------------------- 122 (440)
T 3zyj_A 64 TNTRLLNLHENQIQII-KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-------------------- 122 (440)
T ss_dssp TTCSEEECCSCCCCEE-CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS--------------------
T ss_pred CCCcEEEccCCcCCee-CHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC--------------------
Confidence 4566666666665543 3345556666666666666665544455555555555555555
Q ss_pred CCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCC-CCCchhhhhcCCCCCCEEE
Q 047985 174 TNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNK-LSDELPTFIGTLGSLKELD 252 (930)
Q Consensus 174 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~ 252 (930)
.++...+..+..+++|++|+|++|.++...+..|.++++|++|++++|. +....+..|.++++|++|+
T Consensus 123 -----------~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 123 -----------RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191 (440)
T ss_dssp -----------CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred -----------cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeec
Confidence 4555445566777777777777777776666677777788888887743 3333344677788888888
Q ss_pred ccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccC
Q 047985 253 LLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSG 332 (930)
Q Consensus 253 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 332 (930)
+++|.++ .+| .+..+++|++|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|++|+|++|++++
T Consensus 192 L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 269 (440)
T 3zyj_A 192 LAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL 269 (440)
T ss_dssp CTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC
T ss_pred CCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc
Confidence 8888887 445 47788888888888888888888888888889999999888888888888888899999999998887
Q ss_pred CCcccccCCCCCCEEEccCCCCCCCCchhH
Q 047985 333 QIPSSLSNLTHLSFLDFSLNNFSGKMDLDI 362 (930)
Q Consensus 333 ~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 362 (930)
..+..+..+++|+.|++++|++...-....
T Consensus 270 ~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~ 299 (440)
T 3zyj_A 270 LPHDLFTPLHHLERIHLHHNPWNCNCDILW 299 (440)
T ss_dssp CCTTTTSSCTTCCEEECCSSCEECSSTTHH
T ss_pred cChhHhccccCCCEEEcCCCCccCCCCchH
Confidence 777778888999999999998876554433
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.4e-24 Score=256.73 Aligned_cols=202 Identities=27% Similarity=0.300 Sum_probs=118.2
Q ss_pred cccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEec
Q 047985 486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLD 565 (930)
Q Consensus 486 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 565 (930)
++|++|++++|++++ +|. .+. +|+.|++++|++++ +|.. +++|++|++++|++++. |. .+.+|+.|+
T Consensus 101 ~~L~~L~Ls~N~l~~-l~~---~l~-~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~ 167 (622)
T 3g06_A 101 PGLLELSIFSNPLTH-LPA---LPS-GLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLW 167 (622)
T ss_dssp TTCCEEEECSCCCCC-CCC---CCT-TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEE
T ss_pred CCCCEEECcCCcCCC-CCC---CCC-CcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEE
Confidence 456666666666554 222 222 26666666666653 4432 25566666666666542 22 234566666
Q ss_pred ccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccccc
Q 047985 566 LGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELR 645 (930)
Q Consensus 566 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~ 645 (930)
+++|+++++ | ..+++|+.|+|++|++++..+ .+++|+.|++++|.++ .+|.
T Consensus 168 L~~N~l~~l-~---~~~~~L~~L~Ls~N~l~~l~~------~~~~L~~L~L~~N~l~-~l~~------------------ 218 (622)
T 3g06_A 168 AYNNQLTSL-P---MLPSGLQELSVSDNQLASLPT------LPSELYKLWAYNNRLT-SLPA------------------ 218 (622)
T ss_dssp CCSSCCSCC-C---CCCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCS-SCCC------------------
T ss_pred CCCCCCCCC-c---ccCCCCcEEECCCCCCCCCCC------ccchhhEEECcCCccc-ccCC------------------
Confidence 666666653 2 334566666666666665321 1356666666666665 2221
Q ss_pred cccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCccccccCccccc
Q 047985 646 YMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLG 725 (930)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~ 725 (930)
.++.|+.|+|++|+|++ +| ..+++|+.|+|++|+|+ .+|.
T Consensus 219 --------------------------------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~--- 258 (622)
T 3g06_A 219 --------------------------------LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM--- 258 (622)
T ss_dssp --------------------------------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---
T ss_pred --------------------------------CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---
Confidence 02346667777777764 44 34466777777777776 4554
Q ss_pred ccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccccCCC
Q 047985 726 NLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQ 770 (930)
Q Consensus 726 ~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g~iP~ 770 (930)
.+++|+.|+|++|+|+ .+|..+.++++|+.|++++|+++|.+|.
T Consensus 259 ~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 259 LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 4566777777777777 5676777777777777777777766664
No 66
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=6.6e-28 Score=288.48 Aligned_cols=262 Identities=16% Similarity=0.128 Sum_probs=160.3
Q ss_pred CCCcccceEecCCCCcEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCC-C-C------------chhccCCC
Q 047985 54 DCCSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGS-E-I------------PPEIINLS 119 (930)
Q Consensus 54 ~~C~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~-~-i------------p~~l~~l~ 119 (930)
-|++|.++.. .....+++...... .+ ...+.++++|++|+|+++..... . . +.....++
T Consensus 33 vck~W~~~~~----~~~~~l~~~~~~~~--~~-~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~ 105 (594)
T 2p1m_B 33 VCKSWYEIER----WCRRKVFIGNCYAV--SP-ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYT 105 (594)
T ss_dssp SCHHHHHHHH----HHCCEEEESSTTSS--CH-HHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCT
T ss_pred HHHHHHHhhh----hhceEEeecccccc--CH-HHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCC
Confidence 3557999832 22345666654322 11 12567889999999998753210 0 1 12234688
Q ss_pred CCCEEEccCCCCCccCCcccc-CCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhcc---
Q 047985 120 SLSYLNLSSAAFSGQIPSEIL-ELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLT--- 195 (930)
Q Consensus 120 ~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~--- 195 (930)
+|++|+|++|.+++..+..+. .+++|++|++++|.. +....++..+.++++|++|++++|.+++..+..+.
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~-----~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG-----FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE-----EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC-----CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 999999999998887777775 689999999998831 11233566667889999999999887776555443
Q ss_pred -CCCCCCEEEccCCC--CCCC-CcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCC------CCcchh
Q 047985 196 -YLSSLTTLSLSGCD--LRGR-IPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLS------GELPNS 265 (930)
Q Consensus 196 -~l~~L~~L~L~~n~--l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~------~~~p~~ 265 (930)
.+++|++|++++|. ++.. ++..+.++++|++|++++|...+.++..+..+++|++|+++.+... ..++..
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence 56688888888876 2211 1112244678888888877322236677777778888876655321 023445
Q ss_pred hcCCCCCCEE-EccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCcc-Ccccccccccceeecccc
Q 047985 266 IGNLASLEQV-DLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGEL-PASFGNLRSLRTLDVYEC 328 (930)
Q Consensus 266 l~~l~~L~~L-~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~n 328 (930)
+.++++|+.| .+.... .+.++..+..+++|++|++++|.+++.. +..+..+++|++|++++|
T Consensus 261 l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred HhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 6677777777 333221 1223333345566666666666654322 122345566666666655
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=7.3e-26 Score=247.85 Aligned_cols=246 Identities=22% Similarity=0.217 Sum_probs=123.3
Q ss_pred cccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEec
Q 047985 486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLD 565 (930)
Q Consensus 486 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 565 (930)
++|++|++++|.+++..|..+..++. |++|+|++|.+++..| +..+++|++|++++|++++.. ..++|++|+
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~ 105 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTK-LELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTT-CCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCc-CCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEE
Confidence 45555555555555554455555553 5555555555554332 455555555555555555322 224555555
Q ss_pred ccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccccc
Q 047985 566 LGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELR 645 (930)
Q Consensus 566 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~ 645 (930)
+++|++++..+.. +++|++|++++|++++..+..+ ..+++|++||+++|.+++..|...+..++.++.+++....
T Consensus 106 l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 106 AANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp CCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCT--GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred CCCCccCCcCccc---cCCCCEEECCCCCCCCccchhh--hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence 5555555543322 3445555555555555443332 3345555555555555543332221222222222211110
Q ss_pred cccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCccccccCccccc
Q 047985 646 YMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLG 725 (930)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~ 725 (930)
.... .....++.|+.|+|++|++++. |..+..+++|+.|+|++|+++ .+|..++
T Consensus 181 l~~~------------------------~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~ 234 (317)
T 3o53_A 181 IYDV------------------------KGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALR 234 (317)
T ss_dssp CCEE------------------------ECCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCC
T ss_pred Cccc------------------------ccccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhh
Confidence 0000 0000134466666666666643 333666666666666666666 4566666
Q ss_pred ccCCCCeeeCCCCcCc-ccCCccccCCCCCCeeecCC-CcccccCCC
Q 047985 726 NLTDLESLDLSNNRFS-GQIPQQLVELTFLEFFNVSD-NHFTGPIPQ 770 (930)
Q Consensus 726 ~L~~L~~LdLs~N~ls-g~ip~~l~~L~~L~~L~ls~-N~L~g~iP~ 770 (930)
.+++|+.|+|++|+++ +.+|..+..++.|+.+++++ +.++|..|.
T Consensus 235 ~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred cCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 6666666666666666 55666666666666666663 345555543
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=6.4e-26 Score=248.30 Aligned_cols=261 Identities=20% Similarity=0.176 Sum_probs=159.3
Q ss_pred cEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEE
Q 047985 69 HVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYL 148 (930)
Q Consensus 69 ~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 148 (930)
++...+++.+.+...+.. .+..+++|++|+|++|.+++. .|..+..+++|++|+|++|.+++..| ++.+++|++|
T Consensus 11 ~l~i~~ls~~~l~~~~~~--~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L 85 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALAS--LRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTL 85 (317)
T ss_dssp EEEEESCCTTTHHHHHHH--HHTTGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEE
T ss_pred ceeEeeccccchhhhHHH--HhccCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEE
Confidence 355556666665433332 344567888888888888764 55678888888888888888875544 7777888888
Q ss_pred EccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEE
Q 047985 149 DLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLD 228 (930)
Q Consensus 149 ~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 228 (930)
++++|.+ ++ +...++|++|++++|.+++..+. .+++|++|+
T Consensus 86 ~Ls~n~l-------------------------------~~-----l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~ 126 (317)
T 3o53_A 86 DLNNNYV-------------------------------QE-----LLVGPSIETLHAANNNISRVSCS---RGQGKKNIY 126 (317)
T ss_dssp ECCSSEE-------------------------------EE-----EEECTTCCEEECCSSCCSEEEEC---CCSSCEEEE
T ss_pred ECcCCcc-------------------------------cc-----ccCCCCcCEEECCCCccCCcCcc---ccCCCCEEE
Confidence 8887742 11 11124555555555555433222 244566666
Q ss_pred ccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhh-cCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCC
Q 047985 229 LSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSI-GNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFS 307 (930)
Q Consensus 229 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 307 (930)
+++|.+++..+..++.+++|++|++++|.+++..+..+ ..+++|++|++++|.+++. +. ...+++|++|+|++|+++
T Consensus 127 l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~ 204 (317)
T 3o53_A 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA 204 (317)
T ss_dssp CCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC
T ss_pred CCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCC
Confidence 66666665555555666666666666666665555544 3566666666666666544 22 223666777777777766
Q ss_pred CccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCC
Q 047985 308 GELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTN 378 (930)
Q Consensus 308 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 378 (930)
+ +|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++....... ++..+++|+.++++++
T Consensus 205 ~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~-~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 205 F-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD-FFSKNQRVQTVAKQTV 272 (317)
T ss_dssp E-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHH-HHHTCHHHHHHHHHHH
T ss_pred c-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHH-HHhccccceEEECCCc
Confidence 4 3344666777777777777776 35666667777777777777776222222 2256666777766644
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=1.1e-23 Score=224.83 Aligned_cols=217 Identities=25% Similarity=0.298 Sum_probs=122.1
Q ss_pred CCCCcccceEecCCCCcEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCC
Q 047985 53 IDCCSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFS 132 (930)
Q Consensus 53 ~~~C~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~ 132 (930)
.++|.|.|+.|.-. +.++.++++++.++. ++. .+. ++|++|+|++|.+.+. .+..+..+++|++|+|++|.++
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~--~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~ 74 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPS--NIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQ 74 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCS--CCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSCCS
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCC--CCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCccC
Confidence 37999999999532 345677888777763 332 221 4566666666666543 2335666666666666666665
Q ss_pred ccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCC
Q 047985 133 GQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRG 212 (930)
Q Consensus 133 ~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 212 (930)
+..+..+.++++|++|++++| .+++..+..+..+++|++|++++|.+++
T Consensus 75 ~i~~~~~~~l~~L~~L~l~~n-------------------------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 123 (270)
T 2o6q_A 75 TLPAGIFKELKNLETLWVTDN-------------------------------KLQALPIGVFDQLVNLAELRLDRNQLKS 123 (270)
T ss_dssp CCCTTTTSSCTTCCEEECCSS-------------------------------CCCCCCTTTTTTCSSCCEEECCSSCCCC
T ss_pred eeChhhhcCCCCCCEEECCCC-------------------------------cCCcCCHhHcccccCCCEEECCCCccCe
Confidence 333333345555555555555 3333333444555556666666665555
Q ss_pred CCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCC
Q 047985 213 RIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGN 292 (930)
Q Consensus 213 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 292 (930)
..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|+|++|++++..+..|..
T Consensus 124 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 203 (270)
T 2o6q_A 124 LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcc
Confidence 55555555555666666665555544444555555555555555555444444555555555555555555444444555
Q ss_pred CcCCcEEEccCCCCC
Q 047985 293 LTQLHWLSLASNDFS 307 (930)
Q Consensus 293 l~~L~~L~Ls~N~l~ 307 (930)
+++|+.|+|++|.+.
T Consensus 204 l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 204 LEKLKMLQLQENPWD 218 (270)
T ss_dssp CTTCCEEECCSSCBC
T ss_pred ccCCCEEEecCCCee
Confidence 555555555555544
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2e-24 Score=250.35 Aligned_cols=231 Identities=23% Similarity=0.236 Sum_probs=186.8
Q ss_pred CCchHHhhcc---cccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCC
Q 047985 476 EIPSWICNLS---NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIP 552 (930)
Q Consensus 476 ~ip~~~~~~~---~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 552 (930)
.+|..+..+. ++|+.|+|++|.+++..|..|..++. |++|+|++|.+++..| +..+++|++|+|++|.+++..+
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~ 97 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK-LELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV 97 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTT-CCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCC-CCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC
Confidence 4555555542 37999999999999888888998886 9999999999987666 8888999999999999986543
Q ss_pred ccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhh
Q 047985 553 RSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQC 632 (930)
Q Consensus 553 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~ 632 (930)
.++|+.|++++|.+++..+. .+++|+.|+|++|++++..|..+ ..+++|+.|||++|.+++.+|......
T Consensus 98 -----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~~~ 167 (487)
T 3oja_A 98 -----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAAS 167 (487)
T ss_dssp -----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCG--GGGSSEEEEECTTSCCCEEEGGGGGGG
T ss_pred -----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhh--cCCCCCCEEECCCCCCCCcChHHHhhh
Confidence 38899999999999988664 45789999999999998877655 568899999999999987666432111
Q ss_pred cccceeccccccccccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeecc
Q 047985 633 WNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLA 712 (930)
Q Consensus 633 l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls 712 (930)
++.|+.|+|++|.|++..+ +..+++|+.|+|+
T Consensus 168 ----------------------------------------------l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls 199 (487)
T 3oja_A 168 ----------------------------------------------SDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLS 199 (487)
T ss_dssp ----------------------------------------------TTTCCEEECTTSCCCEEEC--CCCCTTCCEEECC
T ss_pred ----------------------------------------------CCcccEEecCCCccccccc--cccCCCCCEEECC
Confidence 3458889999999987632 3458899999999
Q ss_pred CccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCccc-ccCC
Q 047985 713 DNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFT-GPIP 769 (930)
Q Consensus 713 ~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~-g~iP 769 (930)
+|.+++.+| .++.+++|+.|||++|++++ +|..+..++.|+.|++++|++. |.+|
T Consensus 200 ~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 200 SNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp SSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred CCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence 999986544 58899999999999999986 7888888999999999999987 5555
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=8.1e-23 Score=241.55 Aligned_cols=266 Identities=24% Similarity=0.271 Sum_probs=147.7
Q ss_pred CCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEcc
Q 047985 223 RLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLA 302 (930)
Q Consensus 223 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 302 (930)
+++.|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|+|++|++++ +|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence 4677777777776 4444443 56777777777766 3444 45667777777776653 443 45666667777
Q ss_pred CCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccc
Q 047985 303 SNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSL 382 (930)
Q Consensus 303 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 382 (930)
+|.+++ +|. .+++|++|++++|++++ +|.. +++|++|++++|.+++. + ...
T Consensus 110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~-----~~~--------------- 160 (622)
T 3g06_A 110 SNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-P-----ALP--------------- 160 (622)
T ss_dssp SCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-C-----CCC---------------
T ss_pred CCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-C-----Ccc---------------
Confidence 666664 233 34566666666666653 3332 35566666666655431 1 011
Q ss_pred cccccCCCCccccceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCC
Q 047985 383 LTKATSNTTSHRFRAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPN 462 (930)
Q Consensus 383 ~~~~~~~~~~~~L~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 462 (930)
.+|+.|++++|.++.+| ..+++|+.|++++|.+++ +|. ..++|+.|++++|.++.
T Consensus 161 ----------~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~-l~~-----~~~~L~~L~L~~N~l~~------ 215 (622)
T 3g06_A 161 ----------SELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLAS-LPT-----LPSELYKLWAYNNRLTS------ 215 (622)
T ss_dssp ----------TTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSS------
T ss_pred ----------CCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCC-CCC-----ccchhhEEECcCCcccc------
Confidence 23333334444444444 234556666666665553 222 12445555555544442
Q ss_pred cceEEeccCcCCCCCchHHhhcccccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEc
Q 047985 463 TVNYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDL 542 (930)
Q Consensus 463 l~~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 542 (930)
+|.. +++|+.|++++|++++ +|. .++ +|+.|+|++|+|+ .+|. .+++|+.|+|
T Consensus 216 --------------l~~~----~~~L~~L~Ls~N~L~~-lp~---~l~-~L~~L~Ls~N~L~-~lp~---~~~~L~~L~L 268 (622)
T 3g06_A 216 --------------LPAL----PSGLKELIVSGNRLTS-LPV---LPS-ELKELMVSGNRLT-SLPM---LPSGLLSLSV 268 (622)
T ss_dssp --------------CCCC----CTTCCEEECCSSCCSC-CCC---CCT-TCCEEECCSSCCS-CCCC---CCTTCCEEEC
T ss_pred --------------cCCC----CCCCCEEEccCCccCc-CCC---CCC-cCcEEECCCCCCC-cCCc---ccccCcEEeC
Confidence 2211 1456666666666664 342 223 3666677766666 3444 3456666666
Q ss_pred cCccccccCCccccCCCCCcEecccCccccccCcccccC
Q 047985 543 SDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGT 581 (930)
Q Consensus 543 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 581 (930)
++|+++ .+|..+.++++|+.|+|++|.+++.+|..+..
T Consensus 269 s~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 269 YRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp CSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred CCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 666666 45666666666777777777666666655543
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=7.4e-25 Score=253.91 Aligned_cols=233 Identities=21% Similarity=0.211 Sum_probs=123.0
Q ss_pred CCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhh
Q 047985 92 KLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLAD 171 (930)
Q Consensus 92 ~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~ 171 (930)
.+++|++|+|++|.+++. .|..|+.+++|++|+|++|.+++..| ++.+++|++|+|++|.+. .++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~--------~l~---- 96 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ--------ELL---- 96 (487)
T ss_dssp TGGGCCEEECCSSCCCCC-CGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE--------EEE----
T ss_pred cCCCccEEEeeCCcCCCC-CHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC--------CCC----
Confidence 445788888888888764 56678888888888888888876555 777888888888887431 111
Q ss_pred CCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhc-CCCCCCE
Q 047985 172 KLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIG-TLGSLKE 250 (930)
Q Consensus 172 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~ 250 (930)
..++|++|++++|.+++..+. .+++|++|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|++
T Consensus 97 ~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 97 VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (487)
T ss_dssp ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence 125555555555555554332 234455555555555544444445555555555555555544444443 3445555
Q ss_pred EEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccc
Q 047985 251 LDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKF 330 (930)
Q Consensus 251 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l 330 (930)
|+|++|.+++. |. +..+++|++|+|++|.+++..| .+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+
T Consensus 174 L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 174 LNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp EECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCB
T ss_pred EecCCCccccc-cc-cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCC
Confidence 55555554432 11 2234444444444444443222 24444444444444444442 333344444444444444444
Q ss_pred c-CCCcccccCCCCCCE
Q 047985 331 S-GQIPSSLSNLTHLSF 346 (930)
Q Consensus 331 ~-~~~p~~l~~l~~L~~ 346 (930)
. +.+|..+..++.|+.
T Consensus 250 ~c~~~~~~~~~l~~L~~ 266 (487)
T 3oja_A 250 HCGTLRDFFSKNQRVQT 266 (487)
T ss_dssp CHHHHHHHHTTCHHHHH
T ss_pred cCcchHHHHHhCCCCcE
Confidence 3 333333333333333
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=3.5e-23 Score=221.84 Aligned_cols=228 Identities=22% Similarity=0.203 Sum_probs=173.2
Q ss_pred eeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEecccCc
Q 047985 490 SLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDN 569 (930)
Q Consensus 490 ~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 569 (930)
.++.++..++ .+|..+. .+|++|++++|++++..+..+..+++|++|++++|++++..+..|.++++|++|++++|
T Consensus 11 ~~~c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EEECTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred eEEecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence 3444455544 3454432 24778888888877666667777788888888888888777777888888888888888
Q ss_pred cccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcc-cCChHHHhhcccceecccccccccc
Q 047985 570 QIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTG-KLPSMAFQCWNAMKVVNASELRYMQ 648 (930)
Q Consensus 570 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g-~ip~~~~~~l~~l~~l~~~~~~~~~ 648 (930)
++++..+..|..+++|++|++++|++.+..+..+ ..+++|++|++++|.+++ .+|.. +..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~l~~~-~~~---------------- 147 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEY-FSN---------------- 147 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCC--TTCTTCCEEECCSSCCCCCCCCGG-GGG----------------
T ss_pred ccCccChhhhcCCccccEEECCCCCccccCchhc--ccCCCCCEEECcCCccceecCchh-hcc----------------
Confidence 8888877788888888888888888887655443 667888888888888875 24432 111
Q ss_pred ccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccc----eeeccCccccccCcccc
Q 047985 649 EVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQ----ILSLADNSLHGHIPSCL 724 (930)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~----~L~Ls~N~l~g~ip~~l 724 (930)
++.|+.|+|++|++++..+..+..++.|+ .|++++|.+++..+..+
T Consensus 148 ------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~ 197 (276)
T 2z62_A 148 ------------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197 (276)
T ss_dssp ------------------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS
T ss_pred ------------------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc
Confidence 34588899999999888888888877777 89999999997666655
Q ss_pred cccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCcccccCCCC
Q 047985 725 GNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFTGPIPQG 771 (930)
Q Consensus 725 ~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~g~iP~~ 771 (930)
.. .+|+.|+|++|++++..+..+..+++|+.|++++|++.+..|.-
T Consensus 198 ~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 198 KE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp CS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred CC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 44 58999999999999777777889999999999999999877753
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=3e-26 Score=274.06 Aligned_cols=88 Identities=15% Similarity=0.160 Sum_probs=43.7
Q ss_pred CCCCccEEEccCccccccCCccccC-CCCCcEecccCccccccCcccc-cCCCCCcEEEccCCcccccCCCCCccCCCCC
Q 047985 533 KGNILKVIDLSDNLLQGRIPRSLAN-CSNLEFLDLGDNQIRDIFPSWL-GTLPDLNVLILKSNKFHGLIREPKTDCGFPK 610 (930)
Q Consensus 533 ~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~ 610 (930)
.+++|+.|++++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|++|+|++|++++...... ...+++
T Consensus 430 ~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~-~~~l~~ 507 (594)
T 2p1m_B 430 HCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLAN-ASKLET 507 (594)
T ss_dssp HCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHT-GGGGGG
T ss_pred hCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHH-HHhCCC
Confidence 344555555544 444333333333 5556666666665554433333 345666666666666533221111 123456
Q ss_pred ceEEECCCCcCc
Q 047985 611 LRIIDLSKNRFT 622 (930)
Q Consensus 611 L~~LdLs~N~l~ 622 (930)
|+.|++++|+++
T Consensus 508 L~~L~l~~~~~~ 519 (594)
T 2p1m_B 508 MRSLWMSSCSVS 519 (594)
T ss_dssp SSEEEEESSCCB
T ss_pred CCEEeeeCCCCC
Confidence 666666666663
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=2e-22 Score=215.88 Aligned_cols=143 Identities=24% Similarity=0.276 Sum_probs=75.7
Q ss_pred ccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCC-CcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCc
Q 047985 216 SSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSG-ELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLT 294 (930)
Q Consensus 216 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 294 (930)
..+.++++|++|++++|.+++..+..++.+++|++|++++|.+++ .+|..++.+++|++|++++|++++..+..+..++
T Consensus 94 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 173 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173 (276)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh
Confidence 333344444444444444443333334444444444444444443 2344555555555555555555544444444444
Q ss_pred CCc----EEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCc
Q 047985 295 QLH----WLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMD 359 (930)
Q Consensus 295 ~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~ 359 (930)
+|+ .|++++|.+++..+..+. ..+|++|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 174 ~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 174 QMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp TCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred hccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 444 566666666644343333 3366777777777665555556667777777777777776554
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.3e-22 Score=216.72 Aligned_cols=209 Identities=24% Similarity=0.301 Sum_probs=149.0
Q ss_pred CCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccC
Q 047985 117 NLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTY 196 (930)
Q Consensus 117 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 196 (930)
.+++|++|++++|.+. .++ .++.+++|++|++++|.+.+ + ..+.++++|++|++++|.+++..+..+.+
T Consensus 39 ~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~--------~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 107 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD--------I-SALKELTNLTYLILTGNQLQSLPNGVFDK 107 (272)
T ss_dssp HHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC--------C-GGGTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred cccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC--------c-hhhcCCCCCCEEECCCCccCccChhHhcC
Confidence 3444444444444443 122 24444455555555443211 1 13445555555555555666666666778
Q ss_pred CCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEE
Q 047985 197 LSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVD 276 (930)
Q Consensus 197 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 276 (930)
+++|++|++++|++++..+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+++..+..++.+++|++|+
T Consensus 108 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 187 (272)
T 3rfs_A 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence 88888888888888877777778888888888888888877777778888888888888888877777778888888888
Q ss_pred ccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCC
Q 047985 277 LSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTH 343 (930)
Q Consensus 277 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 343 (930)
+++|++++..+..+..+++|++|++++|.+.+. +++|+.|++..|.++|.+|..++.+..
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 888888887777788888899999988887644 457888888899999888888776543
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=3.8e-23 Score=225.47 Aligned_cols=205 Identities=21% Similarity=0.221 Sum_probs=156.5
Q ss_pred CceeecCCCccccccCccc--CCCCCccEEEccCccccccCC----ccccCCCCCcEecccCccccccCcccccCCCCCc
Q 047985 513 LSILDLQHNKFSGTIPDNL--LKGNILKVIDLSDNLLQGRIP----RSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLN 586 (930)
Q Consensus 513 L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 586 (930)
|++|++++|.+++..|..+ ..+++|++|+|++|++++..+ ..+..+++|++|++++|++++..|..++.+++|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 7777777777777777666 667777777777777776544 3345678888888888888888888888888888
Q ss_pred EEEccCCccccc--CCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccccccccccccCCCCCccceeee
Q 047985 587 VLILKSNKFHGL--IREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSL 664 (930)
Q Consensus 587 ~L~L~~N~l~~~--~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (930)
+|+|++|++.+. ++.......+++|++|+|++|+++ .+|.....-+
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~------------------------------- 220 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALA------------------------------- 220 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHH-------------------------------
T ss_pred EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHH-------------------------------
Confidence 888888887653 222332356788999999999986 2222110000
Q ss_pred EeeecccccccccccccccEEEcccccccccCchhcccc---cccceeeccCccccccCcccccccCCCCeeeCCCCcCc
Q 047985 665 TMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNL---KGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFS 741 (930)
Q Consensus 665 ~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l---~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~ls 741 (930)
...+.|+.|||++|++++.+|..++.+ ++|+.|+|++|+++ .+|..+. ++|+.|||++|+++
T Consensus 221 ------------~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 221 ------------AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN 285 (310)
T ss_dssp ------------HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC
T ss_pred ------------hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC
Confidence 013458999999999999989888877 69999999999999 7888775 89999999999999
Q ss_pred ccCCccccCCCCCCeeecCCCcccc
Q 047985 742 GQIPQQLVELTFLEFFNVSDNHFTG 766 (930)
Q Consensus 742 g~ip~~l~~L~~L~~L~ls~N~L~g 766 (930)
+. |. +..++.|+.|++++|+++.
T Consensus 286 ~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 286 RA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CC-ch-hhhCCCccEEECcCCCCCC
Confidence 74 43 6788999999999999974
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=8.9e-24 Score=233.48 Aligned_cols=266 Identities=21% Similarity=0.248 Sum_probs=187.5
Q ss_pred CCCcccceEecCCCCcEEEEEcCCCCCcccccCcccccCC--CCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCC
Q 047985 54 DCCSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKL--VHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAF 131 (930)
Q Consensus 54 ~~C~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l--~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l 131 (930)
-|.+|.++.|+. ..++.+|++++.+... .+..+ +++++|++++|.+.+. .+ .+..+++|++|+|++|.+
T Consensus 35 vc~~W~~~~~~~--~~~~~l~l~~~~~~~~-----~~~~~~~~~l~~L~l~~n~l~~~-~~-~~~~~~~L~~L~L~~~~l 105 (336)
T 2ast_B 35 VCKRWYRLASDE--SLWQTLDLTGKNLHPD-----VTGRLLSQGVIAFRCPRSFMDQP-LA-EHFSPFRVQHMDLSNSVI 105 (336)
T ss_dssp SCHHHHHHHTCS--TTSSEEECTTCBCCHH-----HHHHHHHTTCSEEECTTCEECSC-CC-SCCCCBCCCEEECTTCEE
T ss_pred HHHHHHHHhcCc--hhheeeccccccCCHH-----HHHhhhhccceEEEcCCcccccc-ch-hhccCCCCCEEEccCCCc
Confidence 456799999863 3577899998877632 45666 8899999999988764 33 366788899999998888
Q ss_pred Ccc-CCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCc-cCCCC-CchhccCCCCCCEEEccCC
Q 047985 132 SGQ-IPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDV-TISSP-IPHNLTYLSSLTTLSLSGC 208 (930)
Q Consensus 132 ~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~L~~n 208 (930)
++. +|..+..+++|++|++++|.+ . ...+..+..+++|++|++++| .+++. ++..+.++++|++|++++|
T Consensus 106 ~~~~~~~~~~~~~~L~~L~L~~~~l----~---~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 106 EVSTLHGILSQCSKLQNLSLEGLRL----S---DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp CHHHHHHHHTTBCCCSEEECTTCBC----C---HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred CHHHHHHHHhhCCCCCEEeCcCccc----C---HHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 765 777788888888888888843 2 345566777888888888887 56653 5566777788888888888
Q ss_pred -CCCCC-CcccccCCC-CCcEEEccCC--CCC-CchhhhhcCCCCCCEEEccCCC-CCCCcchhhcCCCCCCEEEccCCC
Q 047985 209 -DLRGR-IPSSLGNIT-RLIHLDLSFN--KLS-DELPTFIGTLGSLKELDLLQNN-LSGELPNSIGNLASLEQVDLSLNR 281 (930)
Q Consensus 209 -~l~~~-~p~~l~~l~-~L~~L~Ls~n--~l~-~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~ 281 (930)
.+++. ++..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|.
T Consensus 179 ~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 179 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp TTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred CCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 77653 456667777 8888888887 455 4456666777788888888877 666666677777888888887774
Q ss_pred -CCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccc-cccceeecccccccCCCccccc
Q 047985 282 -FLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNL-RSLRTLDVYECKFSGQIPSSLS 339 (930)
Q Consensus 282 -l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~ 339 (930)
+.......+.++++|+.|++++| ++. ..+..+ .+++.|++++|++++..|..++
T Consensus 259 ~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 259 DIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp TCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCccc
Confidence 22222224667777777777777 332 123333 2366666777777777666554
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=3.5e-21 Score=205.43 Aligned_cols=164 Identities=23% Similarity=0.249 Sum_probs=92.9
Q ss_pred cCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCE
Q 047985 195 TYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQ 274 (930)
Q Consensus 195 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 274 (930)
.++++|++|++++|.++...+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|+.+++|++
T Consensus 58 ~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 137 (270)
T 2o6q_A 58 HRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY 137 (270)
T ss_dssp SSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCE
Confidence 33333333333333333322333344455555555555555444444555555555555555555555555556666666
Q ss_pred EEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCC
Q 047985 275 VDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNF 354 (930)
Q Consensus 275 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 354 (930)
|+|++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++
T Consensus 138 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 138 LSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 66666666555445566666666666666666655555566666666666666666655555566677777777777776
Q ss_pred CCCC
Q 047985 355 SGKM 358 (930)
Q Consensus 355 ~~~~ 358 (930)
....
T Consensus 218 ~c~c 221 (270)
T 2o6q_A 218 DCTC 221 (270)
T ss_dssp CCSS
T ss_pred eCCC
Confidence 5543
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=2.2e-23 Score=232.72 Aligned_cols=262 Identities=20% Similarity=0.217 Sum_probs=195.4
Q ss_pred eEEeccCcCCCCCchHHhhcccccceeecccccccCcCc----ccccccccCCceeecCCCccccccCcccCCC-----C
Q 047985 465 NYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLP----QCLGNFSDWLSILDLQHNKFSGTIPDNLLKG-----N 535 (930)
Q Consensus 465 ~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p----~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l-----~ 535 (930)
.+.++.|.++|.+|..+... ++|++|++++|.+++..+ ..+..++.+|++|+|++|.+++..+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIP-HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSC-TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhCC-CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 35677788888888776655 679999999999987776 6677776239999999999988777766664 8
Q ss_pred CccEEEccCccccccCCcc----ccCC-CCCcEecccCccccccCccccc----C-CCCCcEEEccCCcccccCCCCC--
Q 047985 536 ILKVIDLSDNLLQGRIPRS----LANC-SNLEFLDLGDNQIRDIFPSWLG----T-LPDLNVLILKSNKFHGLIREPK-- 603 (930)
Q Consensus 536 ~L~~L~Ls~N~l~~~~p~~----l~~l-~~L~~L~Ls~N~l~~~~p~~l~----~-l~~L~~L~L~~N~l~~~~~~~~-- 603 (930)
+|++|+|++|.+++..+.. +..+ ++|++|++++|++++..+..+. . .++|++|+|++|++.......+
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 8999999999999877764 4444 8999999999999988776543 3 3699999999999885432221
Q ss_pred ccCCCC-CceEEECCCCcCcccCChHHHhhcccceeccccccccccccccCCCCCccceeeeEeeecccccccccccccc
Q 047985 604 TDCGFP-KLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDIL 682 (930)
Q Consensus 604 ~~~~l~-~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 682 (930)
....++ +|++|+|++|++++..+......+. ..+..|
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~------------------------------------------~~~~~L 198 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLA------------------------------------------SIPASV 198 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH------------------------------------------TSCTTC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHH------------------------------------------hCCCCC
Confidence 112333 8999999999998655433211111 112358
Q ss_pred cEEEccccccccc----Cchhccc-ccccceeeccCccccccCc----ccccccCCCCeeeCCCCcCccc-------CCc
Q 047985 683 TAVILSSNRFDGE----IPTSISN-LKGLQILSLADNSLHGHIP----SCLGNLTDLESLDLSNNRFSGQ-------IPQ 746 (930)
Q Consensus 683 ~~L~Ls~N~l~g~----ip~~l~~-l~~L~~L~Ls~N~l~g~ip----~~l~~L~~L~~LdLs~N~lsg~-------ip~ 746 (930)
+.|||++|.+++. ++..+.. .++|+.|||++|.+++..+ ..+..+++|+.|+|++|.+.+. ++.
T Consensus 199 ~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~ 278 (362)
T 3goz_A 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGA 278 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHT
T ss_pred CEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHH
Confidence 9999999999874 4555655 3589999999999987554 4457778999999999995543 344
Q ss_pred cccCCCCCCeeecCCCcccccCC
Q 047985 747 QLVELTFLEFFNVSDNHFTGPIP 769 (930)
Q Consensus 747 ~l~~L~~L~~L~ls~N~L~g~iP 769 (930)
.+..++.|+.||+++|++.+..|
T Consensus 279 ~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 279 AFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp TSTTCCEEEEECTTSCBCCGGGC
T ss_pred HhccCCceEEEecCCCcCCCcch
Confidence 67788999999999999886633
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=8.8e-22 Score=214.69 Aligned_cols=231 Identities=19% Similarity=0.197 Sum_probs=131.2
Q ss_pred CCCCCCEEECCCCCCCCCCCch--hccCCCCCCEEEccCCCCCccCCccc--cCCCCCcEEEccCCCCCCCccccCCchh
Q 047985 92 KLVHLEWLDLAFNDFDGSEIPP--EIINLSSLSYLNLSSAAFSGQIPSEI--LELSKLAYLDLSHNSYYDPVELRKPSLG 167 (930)
Q Consensus 92 ~l~~L~~L~Ls~n~~~~~~ip~--~l~~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~Ls~n~~~~~~~~~~~~l~ 167 (930)
+-..++.|.+..+.++...+.. .+..+++|++|+|++|.+.+..|..+ +.+++|++|++++|.+.... ..++
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~----~~~~ 137 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGR----SWLA 137 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTT----SSHH
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchh----hhhH
Confidence 3345677888777765321211 12234668888888888888888777 77888888888888542110 0111
Q ss_pred hhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCc--hh--hhhc
Q 047985 168 NLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDE--LP--TFIG 243 (930)
Q Consensus 168 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~p--~~l~ 243 (930)
. ..+..+++|++|++++|.+.+..+..++.+++|++|++++|++.+. ++ ..++
T Consensus 138 ~-----------------------~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 194 (310)
T 4glp_A 138 E-----------------------LQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH 194 (310)
T ss_dssp H-----------------------HHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT
T ss_pred H-----------------------HHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh
Confidence 0 1222344555555555555444445555555555555555554432 11 1224
Q ss_pred CCCCCCEEEccCCCCCCCcch----hhcCCCCCCEEEccCCCCCCCCCCCCCCC---cCCcEEEccCCCCCCccCccccc
Q 047985 244 TLGSLKELDLLQNNLSGELPN----SIGNLASLEQVDLSLNRFLGKVPSSLGNL---TQLHWLSLASNDFSGELPASFGN 316 (930)
Q Consensus 244 ~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p~~l~~ 316 (930)
.+++|++|+|++|.++ .++. .++.+++|++|+|++|++++..|..+..+ ++|++|+|++|+++ .+|..+.
T Consensus 195 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~- 271 (310)
T 4glp_A 195 KFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP- 271 (310)
T ss_dssp SSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC-
T ss_pred cCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc-
Confidence 5556666666666654 2222 23555666666666666666555555554 46666666666666 4455443
Q ss_pred ccccceeecccccccCCCcccccCCCCCCEEEccCCCCC
Q 047985 317 LRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFS 355 (930)
Q Consensus 317 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 355 (930)
++|++|++++|++++. |. +..+++|+.|++++|+++
T Consensus 272 -~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 272 -AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp -SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred -CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 5666677777766643 22 455666777777776665
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=7.9e-22 Score=210.70 Aligned_cols=222 Identities=23% Similarity=0.254 Sum_probs=165.9
Q ss_pred CCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCC
Q 047985 119 SSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLS 198 (930)
Q Consensus 119 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 198 (930)
..+..+++..+.+.+.. .+..+++|+.|++++|.+. .+ ..+..+++|++|++++|.+.+. ..+..++
T Consensus 19 ~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~--------~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~ 85 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIK--------SV-QGIQYLPNVRYLALGGNKLHDI--SALKELT 85 (272)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCC--------CC-TTGGGCTTCCEEECTTSCCCCC--GGGTTCT
T ss_pred HHHHHHHhcCccccccc--ccccccceeeeeeCCCCcc--------cc-cccccCCCCcEEECCCCCCCCc--hhhcCCC
Confidence 34555666666665443 3567888999999888532 11 2366788888888888887763 4677888
Q ss_pred CCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEcc
Q 047985 199 SLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLS 278 (930)
Q Consensus 199 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 278 (930)
+|++|++++|.+++..+..+.++++|++|++++|.+++..+..++.+++|++|++++|.+++..+..++.+++|++|+++
T Consensus 86 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 165 (272)
T 3rfs_A 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS 165 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECC
Confidence 88888888888887766677888888888888888887777777888888888888888887666667788888888888
Q ss_pred CCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCC
Q 047985 279 LNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKM 358 (930)
Q Consensus 279 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 358 (930)
+|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+. +++|+.|+++.|.++|.+
T Consensus 166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~i 238 (272)
T 3rfs_A 166 YNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVV 238 (272)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGB
T ss_pred CCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcc
Confidence 8888777667777888888888888888877777777788888888888877644 446777777777777777
Q ss_pred ch
Q 047985 359 DL 360 (930)
Q Consensus 359 ~~ 360 (930)
|.
T Consensus 239 p~ 240 (272)
T 3rfs_A 239 RN 240 (272)
T ss_dssp BC
T ss_pred cC
Confidence 64
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=5.5e-21 Score=205.80 Aligned_cols=204 Identities=23% Similarity=0.257 Sum_probs=121.3
Q ss_pred cccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhh
Q 047985 89 SLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGN 168 (930)
Q Consensus 89 ~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~ 168 (930)
.+..++++++++++++.++. +|..+. ++|++|+|++|.+++..|..+..+++|++|++++|.+. .++.
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~--ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~--------~~~~ 72 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA--LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT--------KLQV 72 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS--CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC--------EEEC
T ss_pred cccccCCccEEECCCCCCCc--CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC--------cccC
Confidence 46677888888888888864 565554 67888888888888777777888888888888888531 1111
Q ss_pred hhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCC
Q 047985 169 LADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSL 248 (930)
Q Consensus 169 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 248 (930)
. ..++ +|++|++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|
T Consensus 73 ~-~~l~------------------------~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L 126 (290)
T 1p9a_G 73 D-GTLP------------------------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126 (290)
T ss_dssp C-SCCT------------------------TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC
T ss_pred C-CCCC------------------------cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC
Confidence 1 3344 4444444444444 334444555555555555555554444555555555
Q ss_pred CEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccc
Q 047985 249 KELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYEC 328 (930)
Q Consensus 249 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n 328 (930)
++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++ .+|..+..+.+|+.|++++|
T Consensus 127 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSC
T ss_pred CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCC
Confidence 55555555555444444555555555555555555444444555555556666555555 44545555555666666666
Q ss_pred ccc
Q 047985 329 KFS 331 (930)
Q Consensus 329 ~l~ 331 (930)
.+.
T Consensus 206 p~~ 208 (290)
T 1p9a_G 206 PWL 208 (290)
T ss_dssp CBC
T ss_pred Ccc
Confidence 554
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=2.2e-23 Score=234.94 Aligned_cols=207 Identities=20% Similarity=0.203 Sum_probs=129.6
Q ss_pred hCCCCCCEEEcCCccCCC----CCchhccCCCCCCEEEccCCCCCCCCccc----ccCC---------CCCcEEEccCCC
Q 047985 171 DKLTNLKELVLGDVTISS----PIPHNLTYLSSLTTLSLSGCDLRGRIPSS----LGNI---------TRLIHLDLSFNK 233 (930)
Q Consensus 171 ~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~p~~----l~~l---------~~L~~L~Ls~n~ 233 (930)
..+++|++|++++|.++. .++..+..+++|++|+|++|.++...+.. +..+ ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 455555555555555555 24445555666666666666654322222 2222 677777777777
Q ss_pred CC-Cchh---hhhcCCCCCCEEEccCCCCCC-----CcchhhcCCCCCCEEEccCCCCC----CCCCCCCCCCcCCcEEE
Q 047985 234 LS-DELP---TFIGTLGSLKELDLLQNNLSG-----ELPNSIGNLASLEQVDLSLNRFL----GKVPSSLGNLTQLHWLS 300 (930)
Q Consensus 234 l~-~~~p---~~l~~l~~L~~L~L~~n~l~~-----~~p~~l~~l~~L~~L~Ls~n~l~----~~~p~~l~~l~~L~~L~ 300 (930)
++ +.++ ..+..+++|++|++++|.++. .+|..+..+++|++|+|++|.++ +.+|..+..+++|++|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 76 3333 355666777777777777762 23336677777777777777775 45666677777788888
Q ss_pred ccCCCCCCc----cCccc--ccccccceeecccccccC----CCcccc-cCCCCCCEEEccCCCCCCCCc-hhHHhhccc
Q 047985 301 LASNDFSGE----LPASF--GNLRSLRTLDVYECKFSG----QIPSSL-SNLTHLSFLDFSLNNFSGKMD-LDIFLVNHK 368 (930)
Q Consensus 301 Ls~N~l~~~----~p~~l--~~l~~L~~L~L~~n~l~~----~~p~~l-~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~~ 368 (930)
|++|.+++. ++..+ +.+++|++|+|++|.+++ .+|..+ .++++|+.|++++|.+++..+ ...+...++
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~ 330 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFS 330 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHH
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhh
Confidence 888877754 45555 337788888888888876 466666 557888888888888887665 223334445
Q ss_pred cccEEEccC
Q 047985 369 LLYHLFLST 377 (930)
Q Consensus 369 ~L~~L~Ls~ 377 (930)
+++.+++..
T Consensus 331 ~~~~~~l~~ 339 (386)
T 2ca6_A 331 TRGRGELDE 339 (386)
T ss_dssp HHTCCEECC
T ss_pred hcCcchhhh
Confidence 554444433
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=8.8e-21 Score=204.22 Aligned_cols=207 Identities=25% Similarity=0.270 Sum_probs=167.5
Q ss_pred ccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhc
Q 047985 115 IINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNL 194 (930)
Q Consensus 115 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l 194 (930)
++++++|++++++++.++ .+|..+. +++++|++++| .+++..+..+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N-------------------------------~l~~~~~~~~ 51 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSEN-------------------------------LLYTFSLATL 51 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTS-------------------------------CCSEEEGGGG
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCC-------------------------------cCCccCHHHh
Confidence 566677777777777766 4554432 34555555554 5555566777
Q ss_pred cCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCE
Q 047985 195 TYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQ 274 (930)
Q Consensus 195 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 274 (930)
.++++|++|++++|.+++..+ .+.+++|++|++++|.++ .+|..+..+++|++|++++|++++..|..|..+++|++
T Consensus 52 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~ 128 (290)
T 1p9a_G 52 MPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128 (290)
T ss_dssp TTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCE
T ss_pred hcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCE
Confidence 888888888888888875433 278899999999999998 56778889999999999999999877788999999999
Q ss_pred EEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCC
Q 047985 275 VDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNF 354 (930)
Q Consensus 275 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 354 (930)
|+|++|++++..+..|..+++|+.|+|++|++++..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++
T Consensus 129 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred EECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 999999999887788899999999999999999776677888999999999999998 6788888888999999999998
Q ss_pred CCCCc
Q 047985 355 SGKMD 359 (930)
Q Consensus 355 ~~~~~ 359 (930)
.....
T Consensus 208 ~C~c~ 212 (290)
T 1p9a_G 208 LCNCE 212 (290)
T ss_dssp CCSGG
T ss_pred cCcCc
Confidence 76543
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=9.1e-21 Score=199.87 Aligned_cols=192 Identities=24% Similarity=0.317 Sum_probs=105.9
Q ss_pred CCCcccceEecCCCCcEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCc
Q 047985 54 DCCSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSG 133 (930)
Q Consensus 54 ~~C~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~ 133 (930)
+||.|.|.+|... .+.++++++.++. ++. .+. ++|++|+|++|.+.+. .+..+..+++|++|+|++|.+++
T Consensus 3 ~Cp~~~gC~C~~~---~~~l~~~~~~l~~-~p~--~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~ 73 (251)
T 3m19_A 3 TCETVTGCTCNEG---KKEVDCQGKSLDS-VPS--GIP--ADTEKLDLQSTGLATL-SDATFRGLTKLTWLNLDYNQLQT 73 (251)
T ss_dssp -CHHHHSSEEEGG---GTEEECTTCCCSS-CCS--CCC--TTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCC
T ss_pred cCCCCCceEcCCC---CeEEecCCCCccc-cCC--CCC--CCCCEEEccCCCcCcc-CHhHhcCcccCCEEECCCCcCCc
Confidence 6889999999532 3357777777653 222 221 4555666666655543 33445555555555555555554
Q ss_pred cCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCC
Q 047985 134 QIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGR 213 (930)
Q Consensus 134 ~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 213 (930)
..|..+..+++|++|++++| .+++.
T Consensus 74 ~~~~~~~~l~~L~~L~L~~n-------------------------------------------------------~l~~~ 98 (251)
T 3m19_A 74 LSAGVFDDLTELGTLGLANN-------------------------------------------------------QLASL 98 (251)
T ss_dssp CCTTTTTTCTTCCEEECTTS-------------------------------------------------------CCCCC
T ss_pred cCHhHhccCCcCCEEECCCC-------------------------------------------------------ccccc
Confidence 44444444444444444444 33333
Q ss_pred CcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCC
Q 047985 214 IPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNL 293 (930)
Q Consensus 214 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 293 (930)
.+..+..+++|++|++++|.+++..+..+..+++|++|+|++|.+++..+..|+.+++|++|+|++|++++..+..+..+
T Consensus 99 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 178 (251)
T 3m19_A 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL 178 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred ChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCC
Confidence 33334444555555555555554444445555555555555555554444455666666666666666665555566666
Q ss_pred cCCcEEEccCCCCCCc
Q 047985 294 TQLHWLSLASNDFSGE 309 (930)
Q Consensus 294 ~~L~~L~Ls~N~l~~~ 309 (930)
++|++|++++|.+.+.
T Consensus 179 ~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 179 GKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTCCEEECCSCCBCTT
T ss_pred CCCCEEEeeCCceeCC
Confidence 6666666666666543
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=2.5e-22 Score=224.10 Aligned_cols=257 Identities=18% Similarity=0.174 Sum_probs=129.6
Q ss_pred EECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCC----ccccCCC-CCcEEEccCCCCCCCccccCCchhhhhhCC
Q 047985 99 LDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIP----SEILELS-KLAYLDLSHNSYYDPVELRKPSLGNLADKL 173 (930)
Q Consensus 99 L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~-~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l 173 (930)
++|+.|.+++. +|..+...++|++|||++|.+++..+ ..+..++ +|++|+|++|.+.+... ..+...+...
T Consensus 3 ~~ls~n~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~---~~l~~~l~~~ 78 (362)
T 3goz_A 3 YKLTLHPGSNP-VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS---DELVQILAAI 78 (362)
T ss_dssp EECCCCTTCCH-HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH---HHHHHHHHTS
T ss_pred cccccccchHH-HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH---HHHHHHHhcc
Confidence 34444444443 34433334445555555554443333 3344444 45555555543211000 1112222222
Q ss_pred -CCCCEEEcCCccCCCCCchhc----cCC-CCCCEEEccCCCCCCCCcccc----cC-CCCCcEEEccCCCCCCc----h
Q 047985 174 -TNLKELVLGDVTISSPIPHNL----TYL-SSLTTLSLSGCDLRGRIPSSL----GN-ITRLIHLDLSFNKLSDE----L 238 (930)
Q Consensus 174 -~~L~~L~L~~n~l~~~~~~~l----~~l-~~L~~L~L~~n~l~~~~p~~l----~~-l~~L~~L~Ls~n~l~~~----~ 238 (930)
++|++|++++|.+++..+..+ ..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+++. +
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 455555555555554444432 222 556666666665554443332 22 24666666666666542 2
Q ss_pred hhhhcCCC-CCCEEEccCCCCCCCcchhh----cCC-CCCCEEEccCCCCCCC----CCCCCCC-CcCCcEEEccCCCCC
Q 047985 239 PTFIGTLG-SLKELDLLQNNLSGELPNSI----GNL-ASLEQVDLSLNRFLGK----VPSSLGN-LTQLHWLSLASNDFS 307 (930)
Q Consensus 239 p~~l~~l~-~L~~L~L~~n~l~~~~p~~l----~~l-~~L~~L~Ls~n~l~~~----~p~~l~~-l~~L~~L~Ls~N~l~ 307 (930)
+..+..++ +|++|+|++|.+++..+..+ ..+ ++|++|+|++|.+++. ++..+.. .++|++|+|++|.++
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 33344444 66666666666665554333 333 4677777777766542 2333333 246777777777766
Q ss_pred CccC----cccccccccceeecccccccCCC-------cccccCCCCCCEEEccCCCCCCCCc
Q 047985 308 GELP----ASFGNLRSLRTLDVYECKFSGQI-------PSSLSNLTHLSFLDFSLNNFSGKMD 359 (930)
Q Consensus 308 ~~~p----~~l~~l~~L~~L~L~~n~l~~~~-------p~~l~~l~~L~~L~Ls~n~l~~~~~ 359 (930)
+..+ ..+..+++|++|++++|.+.+.. +..+..+++|+.|++++|++....+
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 5433 23455667777777777644332 2345566777777777777765533
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=4.9e-22 Score=219.49 Aligned_cols=252 Identities=21% Similarity=0.308 Sum_probs=191.0
Q ss_pred CCCEEECCCCCCCCCCCchhccCC--CCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhC
Q 047985 95 HLEWLDLAFNDFDGSEIPPEIINL--SSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADK 172 (930)
Q Consensus 95 ~L~~L~Ls~n~~~~~~ip~~l~~l--~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~ 172 (930)
.++.++++++.+. +..+..+ +++++|++++|.+.+..+. +..+++|++|++++|.+ . ...++..+..
T Consensus 48 ~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l----~--~~~~~~~~~~ 116 (336)
T 2ast_B 48 LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVI----E--VSTLHGILSQ 116 (336)
T ss_dssp TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEE----C--HHHHHHHHTT
T ss_pred hheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCc----C--HHHHHHHHhh
Confidence 4889999998875 5567777 8999999999999977665 66899999999999943 1 1236778889
Q ss_pred CCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCC-CCCCC-CcccccCCCCCcEEEccCC-CCCCc-hhhhhcCCC-C
Q 047985 173 LTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGC-DLRGR-IPSSLGNITRLIHLDLSFN-KLSDE-LPTFIGTLG-S 247 (930)
Q Consensus 173 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~Ls~n-~l~~~-~p~~l~~l~-~ 247 (930)
+++|++|++++|.+++..+..++.+++|++|++++| .+++. ++..+.++++|++|++++| .+++. ++..+..++ +
T Consensus 117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196 (336)
T ss_dssp BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence 999999999999988888888888999999999998 67653 5666788889999999998 88764 577788888 8
Q ss_pred CCEEEccCC--CCC-CCcchhhcCCCCCCEEEccCCC-CCCCCCCCCCCCcCCcEEEccCCC-CCCccCcccccccccce
Q 047985 248 LKELDLLQN--NLS-GELPNSIGNLASLEQVDLSLNR-FLGKVPSSLGNLTQLHWLSLASND-FSGELPASFGNLRSLRT 322 (930)
Q Consensus 248 L~~L~L~~n--~l~-~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~ 322 (930)
|++|++++| .++ +.+|..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+.++++|++
T Consensus 197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 276 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT 276 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCE
Confidence 999999888 555 4567777888888888888888 666677778888888888888884 33222235677788888
Q ss_pred eecccccccCCCcccccCCCCCCEEEccCCCCCCCCch
Q 047985 323 LDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDL 360 (930)
Q Consensus 323 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~ 360 (930)
|++++| ++...-..+. ..++.|+++.|++++..|.
T Consensus 277 L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 277 LQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARP 311 (336)
T ss_dssp EECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCS
T ss_pred EeccCc-cCHHHHHHHH--hhCcceEEecccCccccCC
Confidence 888877 4322211121 2245555777777766553
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=1.1e-22 Score=229.34 Aligned_cols=244 Identities=21% Similarity=0.219 Sum_probs=182.2
Q ss_pred CchhccCCCCCCEEEccCCCCCccCCc----cccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccC
Q 047985 111 IPPEIINLSSLSYLNLSSAAFSGQIPS----EILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTI 186 (930)
Q Consensus 111 ip~~l~~l~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l 186 (930)
++..+..+++|++|+|++|.+++..+. .+..+++|++|+|++|.+ +.+
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~----------------------------~~l 75 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT----------------------------GRV 75 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCT----------------------------TSC
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccccc----------------------------Ccc
Confidence 344455556666666666665544222 234455555555555421 133
Q ss_pred CCCCchh-------ccCCCCCCEEEccCCCCCC----CCcccccCCCCCcEEEccCCCCCCchhhhh----cCC------
Q 047985 187 SSPIPHN-------LTYLSSLTTLSLSGCDLRG----RIPSSLGNITRLIHLDLSFNKLSDELPTFI----GTL------ 245 (930)
Q Consensus 187 ~~~~~~~-------l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l----~~l------ 245 (930)
.+.+|.. +..+++|++|+|++|.+++ .+|..+..+++|++|+|++|.+++..+..+ ..+
T Consensus 76 ~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~ 155 (386)
T 2ca6_A 76 KDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKA 155 (386)
T ss_dssp GGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhc
Confidence 3444544 4789999999999999987 467788999999999999999975544444 334
Q ss_pred ---CCCCEEEccCCCCC-CCcc---hhhcCCCCCCEEEccCCCCCC-----CCCCCCCCCcCCcEEEccCCCCC----Cc
Q 047985 246 ---GSLKELDLLQNNLS-GELP---NSIGNLASLEQVDLSLNRFLG-----KVPSSLGNLTQLHWLSLASNDFS----GE 309 (930)
Q Consensus 246 ---~~L~~L~L~~n~l~-~~~p---~~l~~l~~L~~L~Ls~n~l~~-----~~p~~l~~l~~L~~L~Ls~N~l~----~~ 309 (930)
++|++|++++|.++ +.+| ..+..+++|++|++++|+++. ..|..+..+++|++|+|++|.++ +.
T Consensus 156 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~ 235 (386)
T 2ca6_A 156 KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 235 (386)
T ss_dssp HTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHH
T ss_pred ccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHH
Confidence 89999999999998 4455 467789999999999999873 35558899999999999999996 56
Q ss_pred cCcccccccccceeecccccccCC----Ccccc--cCCCCCCEEEccCCCCCC----CCchhHHhhccccccEEEccCCc
Q 047985 310 LPASFGNLRSLRTLDVYECKFSGQ----IPSSL--SNLTHLSFLDFSLNNFSG----KMDLDIFLVNHKLLYHLFLSTNR 379 (930)
Q Consensus 310 ~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l--~~l~~L~~L~Ls~n~l~~----~~~~~~~~~~~~~L~~L~Ls~n~ 379 (930)
+|..+..+++|++|+|++|.+++. ++..+ +.+++|+.|++++|.+++ .++.... .++++|+.|++++|+
T Consensus 236 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~-~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 236 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID-EKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH-HHCTTCCEEECTTSB
T ss_pred HHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH-hcCCCceEEEccCCc
Confidence 788889999999999999999865 56666 449999999999999987 3444332 567899999999987
Q ss_pred cccc
Q 047985 380 LSLL 383 (930)
Q Consensus 380 l~~~ 383 (930)
+...
T Consensus 315 l~~~ 318 (386)
T 2ca6_A 315 FSEE 318 (386)
T ss_dssp SCTT
T ss_pred CCcc
Confidence 6543
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=5.7e-20 Score=199.84 Aligned_cols=196 Identities=22% Similarity=0.289 Sum_probs=120.5
Q ss_pred cccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhh
Q 047985 89 SLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGN 168 (930)
Q Consensus 89 ~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~ 168 (930)
....+++|++|++++|.+.. +| .+..+++|++|+|++|.+.+. +. +..+++|++|++++|.+
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l------------- 97 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPL------------- 97 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCC-------------
T ss_pred cHHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcC-------------
Confidence 45567788888888887764 34 577788888888888887743 33 77777777777777743
Q ss_pred hhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCC
Q 047985 169 LADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSL 248 (930)
Q Consensus 169 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 248 (930)
++. ..+..+++|++|++++|.+++. + .+..+++|++|++++|.+++..+ +..+++|
T Consensus 98 ------------------~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L 153 (308)
T 1h6u_A 98 ------------------KNV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNL 153 (308)
T ss_dssp ------------------SCC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTC
T ss_pred ------------------CCc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCc
Confidence 211 1244445555555555555432 2 25555555555555555554433 5556666
Q ss_pred CEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccc
Q 047985 249 KELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYEC 328 (930)
Q Consensus 249 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n 328 (930)
++|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|++|++++|++++..+ +..+++|++|++++|
T Consensus 154 ~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 154 QYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQ 227 (308)
T ss_dssp CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEE
T ss_pred cEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCC
Confidence 666666666654322 5666666666666666654433 5666667777777776665432 666777777777777
Q ss_pred cccC
Q 047985 329 KFSG 332 (930)
Q Consensus 329 ~l~~ 332 (930)
.+++
T Consensus 228 ~i~~ 231 (308)
T 1h6u_A 228 TITN 231 (308)
T ss_dssp EEEC
T ss_pred eeec
Confidence 7664
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=8.7e-20 Score=198.42 Aligned_cols=173 Identities=26% Similarity=0.377 Sum_probs=146.4
Q ss_pred hhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCC
Q 047985 170 ADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLK 249 (930)
Q Consensus 170 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 249 (930)
+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.+++.. .+..+++|+
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~ 132 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQ 132 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCCG--GGTTCTTCC
T ss_pred hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCch--hhcCCCCCC
Confidence 3445555555555555655444 88899999999999999864 36999999999999999998753 389999999
Q ss_pred EEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeeccccc
Q 047985 250 ELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECK 329 (930)
Q Consensus 250 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~ 329 (930)
+|++++|.+++..+ ++.+++|++|++++|++++..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|+
T Consensus 133 ~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 133 VLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQ 206 (308)
T ss_dssp EEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSC
T ss_pred EEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCc
Confidence 99999999996544 8899999999999999987544 8999999999999999986544 8899999999999999
Q ss_pred ccCCCcccccCCCCCCEEEccCCCCCC
Q 047985 330 FSGQIPSSLSNLTHLSFLDFSLNNFSG 356 (930)
Q Consensus 330 l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 356 (930)
+++..+ +..+++|+.|++++|++++
T Consensus 207 l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 207 ISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred cCcccc--ccCCCCCCEEEccCCeeec
Confidence 996553 8999999999999999975
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=1.4e-19 Score=190.75 Aligned_cols=180 Identities=21% Similarity=0.293 Sum_probs=143.4
Q ss_pred CCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEcc
Q 047985 175 NLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLL 254 (930)
Q Consensus 175 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 254 (930)
..++++++++.++. +|..+. +++++|+|++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 34556666665553 344343 578888888888887777778888888888888888888777778888888888888
Q ss_pred CCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCC
Q 047985 255 QNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQI 334 (930)
Q Consensus 255 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 334 (930)
+|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..++.+++|++|+|++|++++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 88888777777888888888888888888777777888888888888888888777767888888888888888888777
Q ss_pred cccccCCCCCCEEEccCCCCCCC
Q 047985 335 PSSLSNLTHLSFLDFSLNNFSGK 357 (930)
Q Consensus 335 p~~l~~l~~L~~L~Ls~n~l~~~ 357 (930)
+..+..+++|+.|++++|++.+.
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCC
Confidence 77788888899999999988766
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=5e-20 Score=192.69 Aligned_cols=178 Identities=17% Similarity=0.183 Sum_probs=87.1
Q ss_pred CCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCC-CCccCCccccCCCCCcEEEccC-CCCCCCccccCCchhhhhhC
Q 047985 95 HLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAA-FSGQIPSEILELSKLAYLDLSH-NSYYDPVELRKPSLGNLADK 172 (930)
Q Consensus 95 ~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~-n~~~~~~~~~~~~l~~~l~~ 172 (930)
+|++|++++|.+++. .+..+..+++|++|++++|. +++..+..+.++++|++|++++ |
T Consensus 32 ~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n------------------- 91 (239)
T 2xwt_C 32 STQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR------------------- 91 (239)
T ss_dssp TCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-------------------
T ss_pred cccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-------------------
Confidence 455555555555432 22244555555555555554 4433333444444444444444 3
Q ss_pred CCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCc---EEEccCC-CCCCchhhhhcCCCCC
Q 047985 173 LTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLI---HLDLSFN-KLSDELPTFIGTLGSL 248 (930)
Q Consensus 173 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~---~L~Ls~n-~l~~~~p~~l~~l~~L 248 (930)
.+++..+..+.++++|++|++++|.+++ +|. +..+++|+ +|++++| .+++..+..|..+++|
T Consensus 92 ------------~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L 157 (239)
T 2xwt_C 92 ------------NLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE 157 (239)
T ss_dssp ------------TCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS
T ss_pred ------------CeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc
Confidence 3333334455666666666666666664 443 55555555 5555555 5554444445555555
Q ss_pred C-EEEccCCCCCCCcchhhcCCCCCCEEEccCCC-CCCCCCCCCCCC-cCCcEEEccCCCCC
Q 047985 249 K-ELDLLQNNLSGELPNSIGNLASLEQVDLSLNR-FLGKVPSSLGNL-TQLHWLSLASNDFS 307 (930)
Q Consensus 249 ~-~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~ 307 (930)
+ +|++++|.++ .+|......++|+.|++++|+ +++..+..|..+ ++|+.|++++|+++
T Consensus 158 ~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 158 TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp EEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred eeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 5 5555555554 333222222445555555552 443333444444 44444444444444
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=7.3e-20 Score=191.41 Aligned_cols=179 Identities=17% Similarity=0.193 Sum_probs=89.5
Q ss_pred hhccCCCCCCEEEccCCC-CCCCCcccccCCCCCcEEEccC-CCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCC
Q 047985 192 HNLTYLSSLTTLSLSGCD-LRGRIPSSLGNITRLIHLDLSF-NKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNL 269 (930)
Q Consensus 192 ~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 269 (930)
..+.++++|++|++++|. ++...+..|.++++|++|++++ |.+++..+..|.++++|++|++++|.+++ +|. +..+
T Consensus 49 ~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l 126 (239)
T 2xwt_C 49 HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKV 126 (239)
T ss_dssp TTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTC
T ss_pred HHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccc
Confidence 344444555555555553 4433334455555555555554 55554444445555555555555555553 343 4455
Q ss_pred CCCC---EEEccCC-CCCCCCCCCCCCCcCCc-EEEccCCCCCCccCcccccccccceeeccccc-ccCCCcccccCC-C
Q 047985 270 ASLE---QVDLSLN-RFLGKVPSSLGNLTQLH-WLSLASNDFSGELPASFGNLRSLRTLDVYECK-FSGQIPSSLSNL-T 342 (930)
Q Consensus 270 ~~L~---~L~Ls~n-~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l-~ 342 (930)
++|+ +|++++| ++++..+..|.++++|+ +|++++|+++ .+|......++|++|++++|+ +++..+..|..+ +
T Consensus 127 ~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~ 205 (239)
T 2xwt_C 127 YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYS 205 (239)
T ss_dssp CBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSB
T ss_pred cccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhcccc
Confidence 5554 5555555 55544444455555555 5555555555 233222222555566665553 554444455555 5
Q ss_pred CCCEEEccCCCCCCCCchhHHhhccccccEEEccCC
Q 047985 343 HLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTN 378 (930)
Q Consensus 343 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 378 (930)
+|+.|++++|++++. |. ..+++|+.|+++++
T Consensus 206 ~L~~L~l~~N~l~~l-~~----~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 206 GPSLLDVSQTSVTAL-PS----KGLEHLKELIARNT 236 (239)
T ss_dssp CCSEEECTTCCCCCC-CC----TTCTTCSEEECTTC
T ss_pred CCcEEECCCCccccC-Ch----hHhccCceeeccCc
Confidence 566666666555532 21 13445555555443
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=9.3e-20 Score=212.67 Aligned_cols=190 Identities=27% Similarity=0.419 Sum_probs=130.4
Q ss_pred cccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEec
Q 047985 486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLD 565 (930)
Q Consensus 486 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 565 (930)
.+|+.|++++|++++ +|..+. + .|++|+|++|+|+ .+| ..+++|++|+|++|+|++ +|. +.. +|+.|+
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l~--~-~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNLP--P-QITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD 126 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCCC--T-TCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred CCccEEEeCCCCCCc-cCHhHc--C-CCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence 378888888888876 665443 3 4888888888887 566 345778888888888876 555 554 788888
Q ss_pred ccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccccc
Q 047985 566 LGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELR 645 (930)
Q Consensus 566 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~ 645 (930)
|++|+|++ +|. .+++|+.|+|++|++++. |. .+++|++|+|++|++++ +|. +
T Consensus 127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-p~-----~l~~L~~L~Ls~N~L~~-lp~--l--------------- 178 (571)
T 3cvr_A 127 VDNNQLTM-LPE---LPALLEYINADNNQLTML-PE-----LPTSLEVLSVRNNQLTF-LPE--L--------------- 178 (571)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC-----CCTTCCEEECCSSCCSC-CCC--C---------------
T ss_pred CCCCcCCC-CCC---cCccccEEeCCCCccCcC-CC-----cCCCcCEEECCCCCCCC-cch--h---------------
Confidence 88888877 344 567788888888877763 32 35677777777777764 542 1
Q ss_pred cccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhccccccc-------ceeeccCccccc
Q 047985 646 YMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGL-------QILSLADNSLHG 718 (930)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L-------~~L~Ls~N~l~g 718 (930)
...|+.|+|++|+|+ .+|. |.. +| +.|+|++|+|+
T Consensus 179 ---------------------------------~~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~- 220 (571)
T 3cvr_A 179 ---------------------------------PESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT- 220 (571)
T ss_dssp ---------------------------------CTTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-
T ss_pred ---------------------------------hCCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-
Confidence 123677777777777 5665 543 56 77777777777
Q ss_pred cCcccccccCCCCeeeCCCCcCcccCCccccCCCC
Q 047985 719 HIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTF 753 (930)
Q Consensus 719 ~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~ 753 (930)
.||..+..+++|+.|+|++|++++.+|..+..++.
T Consensus 221 ~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 221 HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 56777777777777777777777777777666543
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=3.3e-19 Score=197.75 Aligned_cols=239 Identities=21% Similarity=0.224 Sum_probs=165.5
Q ss_pred EEeccCcCCCCCchHHhhcccccceeecccccccCcCcccccccccCCceeecCCCccccccCc-ccCCCCCccE-EEcc
Q 047985 466 YLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPD-NLLKGNILKV-IDLS 543 (930)
Q Consensus 466 l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~-L~Ls 543 (930)
++.++++++ .||..+ ++++++|+|++|+|+...+..|.++++ |++|+|++|++.+.+|. .|.+++++++ +.++
T Consensus 14 v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~-L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 14 FLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGD-LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTT-CCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred EEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCC-CCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 344445555 666554 257888999999888665567888885 99999999888776664 5667777654 6667
Q ss_pred CccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccC-CcccccCCCCCccCCC-CCceEEECCCCcC
Q 047985 544 DNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKS-NKFHGLIREPKTDCGF-PKLRIIDLSKNRF 621 (930)
Q Consensus 544 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~~~~~~~~~l-~~L~~LdLs~N~l 621 (930)
+|++++..|..|..+++|++|++++|+++...+..+....++..|++.+ |++....+..+ ..+ ..+++|++++|++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f--~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF--VGLSFESVILWLNKNGI 166 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSS--TTSBSSCEEEECCSSCC
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccch--hhcchhhhhhccccccc
Confidence 7888888888888888999999999988888777777777888888866 45555433333 233 4688888888888
Q ss_pred cccCChHHHhhcccceeccccccccccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCc-hhc
Q 047985 622 TGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIP-TSI 700 (930)
Q Consensus 622 ~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip-~~l 700 (930)
+ .+|...+. ...++.+++++|+..+.|| ..|
T Consensus 167 ~-~i~~~~f~-----------------------------------------------~~~L~~l~l~~~n~l~~i~~~~f 198 (350)
T 4ay9_X 167 Q-EIHNSAFN-----------------------------------------------GTQLDELNLSDNNNLEELPNDVF 198 (350)
T ss_dssp C-EECTTSST-----------------------------------------------TEEEEEEECTTCTTCCCCCTTTT
T ss_pred c-CCChhhcc-----------------------------------------------ccchhHHhhccCCcccCCCHHHh
Confidence 6 44433221 1236778887544334555 457
Q ss_pred ccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCc
Q 047985 701 SNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNH 763 (930)
Q Consensus 701 ~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~ 763 (930)
+.+++|+.|||++|+|+...+..+. +|+.|.+.++.--..+| .+.++++|+.++++++.
T Consensus 199 ~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 199 HGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp TTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred ccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 8888899999999988854444444 45555544444444667 47788888888888764
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=5.8e-19 Score=180.31 Aligned_cols=182 Identities=24% Similarity=0.256 Sum_probs=94.1
Q ss_pred CCcccceEecCCCCcEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCcc
Q 047985 55 CCSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQ 134 (930)
Q Consensus 55 ~C~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~ 134 (930)
.|.|++|.|... .+. .++. .-.++|++|++++|.+++. .+..+..+++|++|+|++|.+++.
T Consensus 6 ~C~~~~v~c~~~------------~l~-~~p~----~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~ 67 (208)
T 2o6s_A 6 SCSGTTVECYSQ------------GRT-SVPT----GIPAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSL 67 (208)
T ss_dssp EEETTEEECCSS------------CCS-SCCS----CCCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCC
T ss_pred EECCCEEEecCC------------Ccc-CCCC----CCCCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCcc
Confidence 389999999643 122 1111 1234677777777777643 334466777777777777777644
Q ss_pred CCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCC
Q 047985 135 IPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRI 214 (930)
Q Consensus 135 ~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 214 (930)
.+..+..+++|++|++++|. +++..+..+.++++|++|++++|++++..
T Consensus 68 ~~~~~~~l~~L~~L~Ls~n~-------------------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 116 (208)
T 2o6s_A 68 PNGVFNKLTSLTYLNLSTNQ-------------------------------LQSLPNGVFDKLTQLKELALNTNQLQSLP 116 (208)
T ss_dssp CTTTTTTCTTCCEEECCSSC-------------------------------CCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred ChhhcCCCCCcCEEECCCCc-------------------------------CCccCHhHhcCccCCCEEEcCCCcCcccC
Confidence 44445556666666666553 23323333444455555555555554443
Q ss_pred cccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCC
Q 047985 215 PSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGN 292 (930)
Q Consensus 215 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 292 (930)
+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ .+++|+.|+++.|+++|.+|..++.
T Consensus 117 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 117 DGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred HhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcc
Confidence 3344444555555555554444444344444444444444444332 2233444444444444444444443
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=8e-20 Score=213.24 Aligned_cols=210 Identities=22% Similarity=0.290 Sum_probs=142.5
Q ss_pred CCCCCCCCCCCCCCC-----cccce-EecCCCCcEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCchhc
Q 047985 42 AASWKPEEGNNIDCC-----SWDGV-QCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEI 115 (930)
Q Consensus 42 l~~W~~~~~~~~~~C-----~w~gv-~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l 115 (930)
+.+|.. +.++| .|.|+ .|.. ++|+.|+|+++.+.+ ++. .+ +++|++|+|++|.++. +|
T Consensus 33 l~~W~~----~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~--~l--~~~L~~L~Ls~N~l~~--ip--- 96 (571)
T 3cvr_A 33 WDKWEK----QALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPD--NL--PPQITVLEITQNALIS--LP--- 96 (571)
T ss_dssp HHHHHT----TCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCS--CC--CTTCSEEECCSSCCSC--CC---
T ss_pred HHHHhc----cCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCH--hH--cCCCCEEECcCCCCcc--cc---
Confidence 556865 45677 79999 7863 478999999999987 554 34 3789999999999873 66
Q ss_pred cCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhcc
Q 047985 116 INLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLT 195 (930)
Q Consensus 116 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 195 (930)
..+++|++|+|++|.+++ +|. +.. +|++|++++|.+ ++ +|.
T Consensus 97 ~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l-------------------------------~~-lp~--- 137 (571)
T 3cvr_A 97 ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQL-------------------------------TM-LPE--- 137 (571)
T ss_dssp CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCC-------------------------------SC-CCC---
T ss_pred cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcC-------------------------------CC-CCC---
Confidence 557889999999998886 676 554 788888887743 22 222
Q ss_pred CCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCC---
Q 047985 196 YLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASL--- 272 (930)
Q Consensus 196 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--- 272 (930)
.+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|++|+|++|.++ .+|. +.. +|
T Consensus 138 ~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~ 205 (571)
T 3cvr_A 138 LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHS 205 (571)
T ss_dssp CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC--------
T ss_pred cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcc
Confidence 34455555555555553 333 34556666666666655 343 33 56666666666666 4454 433 55
Q ss_pred ----CEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccc
Q 047985 273 ----EQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRS 319 (930)
Q Consensus 273 ----~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 319 (930)
+.|+|++|+++ .+|..+..+++|+.|+|++|.+++.+|..+..++.
T Consensus 206 ~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 206 EETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp --CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred cccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 88888888887 46777777888888888888888887777765543
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=4e-19 Score=181.53 Aligned_cols=175 Identities=22% Similarity=0.261 Sum_probs=97.8
Q ss_pred CceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccC
Q 047985 513 LSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKS 592 (930)
Q Consensus 513 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 592 (930)
|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+|++
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 109 (208)
T 2o6s_A 30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109 (208)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCC
Confidence 55555555555544444445555555555555555554444455556666666666666555555555566666666666
Q ss_pred CcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceeccccccccccccccCCCCCccceeeeEeeecccc
Q 047985 593 NKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQM 672 (930)
Q Consensus 593 N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (930)
|++++..+..+ ..+++|++|++++|++++ +|...+..
T Consensus 110 N~l~~~~~~~~--~~l~~L~~L~l~~N~l~~-~~~~~~~~---------------------------------------- 146 (208)
T 2o6s_A 110 NQLQSLPDGVF--DKLTQLKDLRLYQNQLKS-VPDGVFDR---------------------------------------- 146 (208)
T ss_dssp SCCCCCCTTTT--TTCTTCCEEECCSSCCSC-CCTTTTTT----------------------------------------
T ss_pred CcCcccCHhHh--ccCCcCCEEECCCCccce-eCHHHhcc----------------------------------------
Confidence 66555443322 445566666666666653 22211111
Q ss_pred cccccccccccEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCcc
Q 047985 673 MSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQ 747 (930)
Q Consensus 673 ~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~ 747 (930)
.+.|+.|++++|.+.+. ++.|+.|+++.|+++|.+|..++.++. ++..|...|..+.+
T Consensus 147 ------l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~~~~~~ 204 (208)
T 2o6s_A 147 ------LTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSGKPVRS 204 (208)
T ss_dssp ------CTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTCCBGGG
T ss_pred ------CCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCceeeccCccccC----CccccccCCCccee
Confidence 23356666666665533 346677777777777777777776654 55566555555444
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=1.7e-18 Score=191.89 Aligned_cols=222 Identities=16% Similarity=0.104 Sum_probs=136.7
Q ss_pred CCCCEEECCCCCCCCCCCch-hccCCCCCCEEEccCCCCCccCCc-cccCCCCCcEEEccCCCCCCCccccCCchhhhhh
Q 047985 94 VHLEWLDLAFNDFDGSEIPP-EIINLSSLSYLNLSSAAFSGQIPS-EILELSKLAYLDLSHNSYYDPVELRKPSLGNLAD 171 (930)
Q Consensus 94 ~~L~~L~Ls~n~~~~~~ip~-~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~ 171 (930)
+++++|+|++|.++. +|+ .|.++++|++|+|++|.+.+.+|. .|.++++|+++
T Consensus 30 ~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~----------------------- 84 (350)
T 4ay9_X 30 RNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI----------------------- 84 (350)
T ss_dssp TTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE-----------------------
T ss_pred CCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh-----------------------
Confidence 456666666666653 333 456666666666666665544443 33444444432
Q ss_pred CCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccC-CCCCCchhhhhcCCC-CCC
Q 047985 172 KLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSF-NKLSDELPTFIGTLG-SLK 249 (930)
Q Consensus 172 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~-~L~ 249 (930)
+.++.|+++...|..|..+++|++|++++|+++...+..+....++..|++.+ +.+....+..+..+. .++
T Consensus 85 -------l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~ 157 (350)
T 4ay9_X 85 -------RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESV 157 (350)
T ss_dssp -------EEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCE
T ss_pred -------hcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhh
Confidence 22333455555566777777888888888877766555566666777777765 455544445555553 577
Q ss_pred EEEccCCCCCCCcchhhcCCCCCCEEEccC-CCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccc
Q 047985 250 ELDLLQNNLSGELPNSIGNLASLEQVDLSL-NRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYEC 328 (930)
Q Consensus 250 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n 328 (930)
+|++++|+++ .+|.......+|+.|++++ |.++...+..|..+++|++|+|++|+++...+..+.+++ .|.+.++
T Consensus 158 ~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~---~L~~l~~ 233 (350)
T 4ay9_X 158 ILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK---KLRARST 233 (350)
T ss_dssp EEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCC---EEECTTC
T ss_pred hhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccch---HhhhccC
Confidence 8888888887 4555555567788888875 445443345678888888888888888755444444444 4444333
Q ss_pred cccCCCcccccCCCCCCEEEccCC
Q 047985 329 KFSGQIPSSLSNLTHLSFLDFSLN 352 (930)
Q Consensus 329 ~l~~~~p~~l~~l~~L~~L~Ls~n 352 (930)
.-...+| .+..+++|+.+++.++
T Consensus 234 ~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 234 YNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp TTCCCCC-CTTTCCSCCEEECSCH
T ss_pred CCcCcCC-CchhCcChhhCcCCCC
Confidence 3333555 3677778888777543
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=1.6e-17 Score=178.84 Aligned_cols=172 Identities=26% Similarity=0.342 Sum_probs=96.2
Q ss_pred cccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhh
Q 047985 89 SLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGN 168 (930)
Q Consensus 89 ~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~ 168 (930)
.+..+++|++|++++|.+.. ++ .+..+++|++|+|++|.+++..+ ++.+++|++|++++|.+. .++
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~--------~~~- 106 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK--------DLS- 106 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC--------CGG-
T ss_pred chhhcCcccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC--------CCh-
Confidence 45677888888888888764 33 47778888888888888875433 778888888888887531 122
Q ss_pred hhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCC
Q 047985 169 LADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSL 248 (930)
Q Consensus 169 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 248 (930)
.+..+++|++|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|
T Consensus 107 ~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L 180 (291)
T 1h6t_A 107 SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKL 180 (291)
T ss_dssp GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCcc
Confidence 245555555555555555542 2344455555555555555432 334444444444444444444332 4444444
Q ss_pred CEEEccCCCCCCCcchhhcCCCCCCEEEccCCCC
Q 047985 249 KELDLLQNNLSGELPNSIGNLASLEQVDLSLNRF 282 (930)
Q Consensus 249 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 282 (930)
++|++++|.+++ +| .+..+++|+.|++++|++
T Consensus 181 ~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 181 QNLYLSKNHISD-LR-ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEE
T ss_pred CEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcc
Confidence 444444444442 22 234444444444444443
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=3.9e-17 Score=192.78 Aligned_cols=175 Identities=26% Similarity=0.346 Sum_probs=117.9
Q ss_pred cccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhh
Q 047985 89 SLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGN 168 (930)
Q Consensus 89 ~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~ 168 (930)
.+..+++|+.|++++|.+.. +| .+..+++|++|+|++|.+.+..| +..+++|++|+|++|.+.+ ++
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~--------l~- 103 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD--------LS- 103 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC--------CT-
T ss_pred chhcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC--------Ch-
Confidence 45677888888888888764 33 57888888888888888885444 7788888888888885421 22
Q ss_pred hhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCC
Q 047985 169 LADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSL 248 (930)
Q Consensus 169 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 248 (930)
.+..+++|++|+|++|.+.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..| +..+++|
T Consensus 104 ~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L 177 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKL 177 (605)
T ss_dssp TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCC
Confidence 456667777777777766653 3466667777777777766644 456666666666666666666554 6666666
Q ss_pred CEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCC
Q 047985 249 KELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGK 285 (930)
Q Consensus 249 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 285 (930)
++|+|++|.+++. | .+..+++|+.|+|++|.+.+.
T Consensus 178 ~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 178 QNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred CEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence 6666666666643 2 466666666666666666543
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=4.2e-17 Score=175.57 Aligned_cols=173 Identities=25% Similarity=0.338 Sum_probs=101.6
Q ss_pred ccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhc
Q 047985 115 IINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNL 194 (930)
Q Consensus 115 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l 194 (930)
+..+++|++|++++|.+.+ ++ .+..+++|++|++++|. +++..+ +
T Consensus 42 ~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~-------------------------------l~~~~~--l 86 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNK-------------------------------LTDIKP--L 86 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSC-------------------------------CCCCGG--G
T ss_pred hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCc-------------------------------cCCCcc--c
Confidence 3456666666666666653 23 35566666666666663 333222 4
Q ss_pred cCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCE
Q 047985 195 TYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQ 274 (930)
Q Consensus 195 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 274 (930)
.++++|++|++++|.+++ + ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|++
T Consensus 87 ~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 160 (291)
T 1h6t_A 87 ANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDT 160 (291)
T ss_dssp TTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred ccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCE
Confidence 455555555555555543 1 2355556666666666665543 3455566666666666666543 35666666666
Q ss_pred EEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccC
Q 047985 275 VDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSG 332 (930)
Q Consensus 275 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 332 (930)
|++++|++++..+ +..+++|++|++++|.+++. + .+..+++|+.|++++|+++.
T Consensus 161 L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 161 LSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred EEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 6666666665444 66666677777777766642 3 36667777777777776664
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=3e-17 Score=168.96 Aligned_cols=160 Identities=19% Similarity=0.171 Sum_probs=136.6
Q ss_pred eEEeccCcCCCCCchHHhhcccccceeecccccccCcCc-ccccccccCCceeecCCCccccccCcccCCCCCccEEEcc
Q 047985 465 NYLVSNNSLTGEIPSWICNLSNRLESLDLSYNNLSGLLP-QCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLS 543 (930)
Q Consensus 465 ~l~ls~n~l~g~ip~~~~~~~~~L~~L~Ls~N~l~~~~p-~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 543 (930)
.+++++|.++ .+|..+. ..+++|++++|++++..| ..|..++. |++|+|++|++++..+..+..+++|++|+|+
T Consensus 15 ~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~-L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQ-LRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp EEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTT-CCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred EeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCC-CCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 3444444444 4565443 457899999999998755 45788886 9999999999998888889999999999999
Q ss_pred CccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcc
Q 047985 544 DNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTG 623 (930)
Q Consensus 544 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g 623 (930)
+|++++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..+ ..+++|+.|+|++|++++
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF--DTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT--TTCTTCCEEECCSCCEEC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh--cCCCCCCEEEecCcCCcC
Confidence 999999988899999999999999999999999999999999999999999999887666 678999999999999998
Q ss_pred cCChHHHh
Q 047985 624 KLPSMAFQ 631 (930)
Q Consensus 624 ~ip~~~~~ 631 (930)
..+..++.
T Consensus 168 ~c~l~~l~ 175 (220)
T 2v70_A 168 NCYLAWLG 175 (220)
T ss_dssp SGGGHHHH
T ss_pred CCchHHHH
Confidence 87755543
No 105
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=8.4e-19 Score=212.37 Aligned_cols=221 Identities=19% Similarity=0.178 Sum_probs=100.4
Q ss_pred cHHHHHHHHHHHhhcCCCCCccccccCCCccCCCCCCCCCCCCCCCCCCCcccceEecCCCCcEEEEEcCCCCCcccccC
Q 047985 7 HGDERSALLQFKESLIISESKEIDTLYGPIFCHPKAASWKPEEGNNIDCCSWDGVQCNENTGHVIKLDLSSSCLQGSINS 86 (930)
Q Consensus 7 ~~~~~~aLl~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~~C~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~ 86 (930)
...+++||+++..+...... .....|... .+..+.|.++.+.. ++|+.|+|.++.+.....
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~-------------~~~~~~~~~---~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~~~- 190 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDSKT-------------AKKQQPTGD---STPSGTATNSAVST--PLTPKIELFANGKDEANQ- 190 (727)
T ss_dssp --CCCHHHHHHHHHHHHHHT-------------TC---------------------------------------------
T ss_pred cccchhhhhhhhhhcccccC-------------cccCCCcCC---CCccccCCCceecC--CccceEEeeCCCCCcchh-
Confidence 34578899999987653321 134467542 45678899998864 689999999988865322
Q ss_pred cccccCCCCCCEEECCCCCCCCC--------CCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCC
Q 047985 87 SSSLFKLVHLEWLDLAFNDFDGS--------EIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDP 158 (930)
Q Consensus 87 ~~~l~~l~~L~~L~Ls~n~~~~~--------~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~ 158 (930)
.+ |+.++|+.|.+.+. ..|..+..+++|++|+|++|.+. .+|..+..+++|++|+|++|.+
T Consensus 191 --~~-----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l--- 259 (727)
T 4b8c_D 191 --AL-----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSL--- 259 (727)
T ss_dssp --------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCC---
T ss_pred --hH-----hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcC---
Confidence 22 33344444443321 13566778888888888888887 6777777788888888888753
Q ss_pred ccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCch
Q 047985 159 VELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDEL 238 (930)
Q Consensus 159 ~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 238 (930)
..+|..+.++++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..|+++++|++|+|++|.+++.+
T Consensus 260 -----~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~ 332 (727)
T 4b8c_D 260 -----TELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQF 332 (727)
T ss_dssp -----SCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHH
T ss_pred -----cccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCC
Confidence 234555666666666666666666 45666666666666666666665 45555666666666666666666666
Q ss_pred hhhhcCCC-CCCEEEccCCCCCCCcch
Q 047985 239 PTFIGTLG-SLKELDLLQNNLSGELPN 264 (930)
Q Consensus 239 p~~l~~l~-~L~~L~L~~n~l~~~~p~ 264 (930)
|..+..+. .+..|+|++|.+++.+|.
T Consensus 333 p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 333 LKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred hHHHhhcchhhhHHhhccCcccCcCcc
Confidence 65554321 112245555555555543
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=2.2e-17 Score=183.85 Aligned_cols=127 Identities=27% Similarity=0.335 Sum_probs=67.0
Q ss_pred ceeecccccccCcCcccccccccCCceeecCCCccccccCcccC-CCCCccEEEccCccccccCCccccCCCCCcEeccc
Q 047985 489 ESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLL-KGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLG 567 (930)
Q Consensus 489 ~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 567 (930)
+.+++++++++. +|..+.. .++.|+|++|+|++..+..+. .+++|++|+|++|+|++..+..|.++++|++|+|+
T Consensus 21 ~~l~c~~~~l~~-iP~~~~~---~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLPS---YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSS-CCSSCCT---TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCc-cCccCCC---CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 466666666653 4443322 356666666666654444444 55556666666666655555555555555555555
Q ss_pred CccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcC
Q 047985 568 DNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRF 621 (930)
Q Consensus 568 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l 621 (930)
+|+|++..+..|..+++|++|+|++|++.+..+..+ ..+++|+.|+|++|++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~L~~N~l 148 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF--EDMAQLQKLYLSQNQI 148 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHh--CCcccCCEEECCCCcC
Confidence 555555555555555555555555555554433322 3334444444444433
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=6.3e-17 Score=166.49 Aligned_cols=159 Identities=23% Similarity=0.305 Sum_probs=116.3
Q ss_pred CEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCC
Q 047985 201 TTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLN 280 (930)
Q Consensus 201 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 280 (930)
+.++++++.++ .+|..+. ++|+.|++++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45566666655 3444443 56777777777777666667777777777777777777666777777777888888888
Q ss_pred CCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCch
Q 047985 281 RFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDL 360 (930)
Q Consensus 281 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~ 360 (930)
+++...+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|+.|++++|++...-..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 77766556677788888888888888877777788888888888888888877666778888888888888888765544
Q ss_pred hH
Q 047985 361 DI 362 (930)
Q Consensus 361 ~~ 362 (930)
..
T Consensus 171 ~~ 172 (220)
T 2v9t_B 171 KW 172 (220)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.71 E-value=1.2e-16 Score=165.48 Aligned_cols=159 Identities=23% Similarity=0.241 Sum_probs=86.3
Q ss_pred CCCCCcccceEecCCCCcEEEEEcCCCCCcccccCcccccCCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCC
Q 047985 52 NIDCCSWDGVQCNENTGHVIKLDLSSSCLQGSINSSSSLFKLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAF 131 (930)
Q Consensus 52 ~~~~C~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l 131 (930)
+...|+|++|.|... .+. .++. .+ .++|++|+|++|.+++. .|..+..+++|++|+|++|.+
T Consensus 15 ~~~~Cs~~~v~c~~~------------~l~-~ip~--~~--~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~l 76 (229)
T 3e6j_A 15 SQCSCSGTTVDCRSK------------RHA-SVPA--GI--PTNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQL 76 (229)
T ss_dssp TTCEEETTEEECTTS------------CCS-SCCS--CC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred CCCEEeCCEeEccCC------------CcC-ccCC--CC--CCCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCCC
Confidence 467899999999643 121 2222 11 25666666666666654 455566666666666666666
Q ss_pred CccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCC
Q 047985 132 SGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLR 211 (930)
Q Consensus 132 ~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 211 (930)
.+..+..+..+++|++|+|++| .+++..+..+..+++|++|+|++|+++
T Consensus 77 ~~i~~~~~~~l~~L~~L~Ls~N-------------------------------~l~~l~~~~~~~l~~L~~L~Ls~N~l~ 125 (229)
T 3e6j_A 77 GALPVGVFDSLTQLTVLDLGTN-------------------------------QLTVLPSAVFDRLVHLKELFMCCNKLT 125 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS-------------------------------CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCcChhhcccCCCcCEEECCCC-------------------------------cCCccChhHhCcchhhCeEeccCCccc
Confidence 5333344455555555555555 333333344445555555555555555
Q ss_pred CCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCC
Q 047985 212 GRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSG 260 (930)
Q Consensus 212 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 260 (930)
.+|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 126 -~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 126 -ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp -SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred -ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 344455555555555555555554444444445555555555554443
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.71 E-value=5.1e-17 Score=167.21 Aligned_cols=159 Identities=22% Similarity=0.275 Sum_probs=103.7
Q ss_pred EEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchh-hhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCC
Q 047985 202 TLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELP-TFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLN 280 (930)
Q Consensus 202 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 280 (930)
++++++|.++. +|..+. +.+++|++++|.+++..+ ..|..+++|++|+|++|.+++..+..|..+++|++|+|++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 55555555542 344332 234566666666665533 34566666666666666666555556666677777777777
Q ss_pred CCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCch
Q 047985 281 RFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDL 360 (930)
Q Consensus 281 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~ 360 (930)
++++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|+.|++++|++.+..+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 77666666666777777777777777766666777777777777777777766677777777777888888877776654
Q ss_pred hHH
Q 047985 361 DIF 363 (930)
Q Consensus 361 ~~~ 363 (930)
..+
T Consensus 172 ~~l 174 (220)
T 2v70_A 172 AWL 174 (220)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=1.8e-20 Score=220.07 Aligned_cols=211 Identities=18% Similarity=0.124 Sum_probs=117.5
Q ss_pred cCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCcc------ccCCchhhhhhCCCCCCEEE-cCCccCCC
Q 047985 116 INLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVE------LRKPSLGNLADKLTNLKELV-LGDVTISS 188 (930)
Q Consensus 116 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~------~~~~~l~~~l~~l~~L~~L~-L~~n~l~~ 188 (930)
..+++|+.|+|++|.+. .+|..+++|++|+.|++++|....... ...+..|..+..+++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence 45666666666666665 566666666667666665541000000 00022333344444444444 222211
Q ss_pred CCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcC
Q 047985 189 PIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGN 268 (930)
Q Consensus 189 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 268 (930)
..|+.+.+.+|.++.. +. ..|+.|++++|.+++ +|. ++.+++|++|+|++|.++ .+|..++.
T Consensus 423 ---------~~L~~l~l~~n~i~~l-~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 423 ---------DDLRSKFLLENSVLKM-EY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp ---------HHHHHHHHHHHHHHHH-HH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred ---------chhhhhhhhccccccc-Cc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence 1122222233333211 10 136666666666665 344 666667777777777766 56666777
Q ss_pred CCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCcc-CcccccccccceeecccccccCCCccc---ccCCCCC
Q 047985 269 LASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGEL-PASFGNLRSLRTLDVYECKFSGQIPSS---LSNLTHL 344 (930)
Q Consensus 269 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~---l~~l~~L 344 (930)
+++|+.|+|++|++++ +| .++.+++|++|+|++|++++.. |..++.+++|++|+|++|.+++..|.. +..+++|
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L 562 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCccc
Confidence 7777777777777665 45 6677777777777777777665 667777777777777777776554321 2336777
Q ss_pred CEEEc
Q 047985 345 SFLDF 349 (930)
Q Consensus 345 ~~L~L 349 (930)
+.|++
T Consensus 563 ~~L~l 567 (567)
T 1dce_A 563 SSILT 567 (567)
T ss_dssp SEEEC
T ss_pred CccCC
Confidence 77753
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=6.9e-17 Score=190.68 Aligned_cols=191 Identities=24% Similarity=0.276 Sum_probs=99.0
Q ss_pred CCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCC
Q 047985 94 VHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKL 173 (930)
Q Consensus 94 ~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l 173 (930)
..+..++++.+.+... ..+..+++|++|++++|.+. .+| .++.+++|++|+|++|.+. .++. +..+
T Consensus 21 ~~l~~l~l~~~~i~~~---~~~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~--------~~~~-l~~l 86 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDA---VTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLT--------DIKP-LTNL 86 (605)
T ss_dssp HHHHHHHTTCSCTTSE---ECHHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCC--------CCGG-GGGC
T ss_pred HHHHHHhccCCCcccc---cchhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCC--------CChh-hccC
Confidence 3344455565555432 12456667777777777766 333 3666666777776666431 1111 4444
Q ss_pred CCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEc
Q 047985 174 TNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDL 253 (930)
Q Consensus 174 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 253 (930)
++|++|+|++|.+.+. ..+..+++|++|+|++|.+.+. ..+..+++|+.|+|
T Consensus 87 ~~L~~L~Ls~N~l~~l--------------------------~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~L 138 (605)
T 1m9s_A 87 KNLGWLFLDENKIKDL--------------------------SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYL 138 (605)
T ss_dssp TTCCEEECCSSCCCCC--------------------------TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEEC
T ss_pred CCCCEEECcCCCCCCC--------------------------hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEEC
Confidence 4444444444444431 1344455555555555555432 23445555555555
Q ss_pred cCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccC
Q 047985 254 LQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSG 332 (930)
Q Consensus 254 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 332 (930)
++|.+++. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++.+
T Consensus 139 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 139 GNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 55555533 345555555555555555554444 55555555555555555532 235555555555555555553
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=1.6e-19 Score=211.83 Aligned_cols=202 Identities=23% Similarity=0.251 Sum_probs=129.3
Q ss_pred cccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEec
Q 047985 486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLD 565 (930)
Q Consensus 486 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 565 (930)
+.|+.|+|++|+++ .+|..++.+.. |+.|++++|.....+|.. +..+.+.+.+|..+.++++|+.|+
T Consensus 349 ~~L~~L~Ls~n~L~-~Lp~~i~~l~~-L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L~~L~ 415 (567)
T 1dce_A 349 EQLFRCELSVEKST-VLQSELESCKE-LQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTLKAVD 415 (567)
T ss_dssp TTSSSCCCCHHHHH-HHHHHHHHHHH-HHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred ccceeccCChhhHH-hhHHHHHHHHH-HHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhcccCc
Confidence 56777777777775 56777777765 777777555421111110 011224455666667777777777
Q ss_pred -ccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhcccceecccccc
Q 047985 566 -LGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCWNAMKVVNASEL 644 (930)
Q Consensus 566 -Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l~~l~~l~~~~~ 644 (930)
++.|.+. .|+.+.+.+|.+.+..+ ..|+.|+|++|.+++ +|. +..
T Consensus 416 ~l~~n~~~-----------~L~~l~l~~n~i~~l~~--------~~L~~L~Ls~n~l~~-lp~--~~~------------ 461 (567)
T 1dce_A 416 PMRAAYLD-----------DLRSKFLLENSVLKMEY--------ADVRVLHLAHKDLTV-LCH--LEQ------------ 461 (567)
T ss_dssp GGGHHHHH-----------HHHHHHHHHHHHHHHHH--------TTCSEEECTTSCCSS-CCC--GGG------------
T ss_pred chhhcccc-----------hhhhhhhhcccccccCc--------cCceEEEecCCCCCC-CcC--ccc------------
Confidence 5655443 23334445555544321 136677777777764 442 211
Q ss_pred ccccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceeeccCccccccCcccc
Q 047985 645 RYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCL 724 (930)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l 724 (930)
++.|+.|+|++|+|+ .+|..|+.+++|+.|+|++|++++ +| .+
T Consensus 462 ----------------------------------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l 504 (567)
T 1dce_A 462 ----------------------------------LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GV 504 (567)
T ss_dssp ----------------------------------GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GG
T ss_pred ----------------------------------cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-cc
Confidence 234677777777777 777778888888888888888875 66 67
Q ss_pred cccCCCCeeeCCCCcCcccC-CccccCCCCCCeeecCCCcccccCCCC
Q 047985 725 GNLTDLESLDLSNNRFSGQI-PQQLVELTFLEFFNVSDNHFTGPIPQG 771 (930)
Q Consensus 725 ~~L~~L~~LdLs~N~lsg~i-p~~l~~L~~L~~L~ls~N~L~g~iP~~ 771 (930)
+++++|+.|+|++|++++.+ |..+..+++|+.|++++|+|+|.+|..
T Consensus 505 ~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 505 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 88888888888888888776 778888888888888888888776643
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.69 E-value=3.2e-16 Score=162.35 Aligned_cols=156 Identities=22% Similarity=0.232 Sum_probs=123.1
Q ss_pred CCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccC
Q 047985 200 LTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSL 279 (930)
Q Consensus 200 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 279 (930)
-+.++.+++.++ .+|..+. ++|++|++++|.+++..|..+..+++|++|+|++|.++...+..|..+++|++|+|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 455666666665 4454443 6788888888888877777788888888888888888765556678888888888888
Q ss_pred CCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCc
Q 047985 280 NRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMD 359 (930)
Q Consensus 280 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~ 359 (930)
|++++..+..|..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 8888777777888888888888888888 677788888888888888888887666778888899999999998887654
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.68 E-value=7.4e-17 Score=179.49 Aligned_cols=158 Identities=23% Similarity=0.137 Sum_probs=83.2
Q ss_pred CCCEEEccCCCCCCCCccccc-CCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEc
Q 047985 199 SLTTLSLSGCDLRGRIPSSLG-NITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDL 277 (930)
Q Consensus 199 ~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 277 (930)
.++.|+|++|++++..+..+. ++++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 355555555555554444444 5555555555555555555555555555555555555555444445555555555555
Q ss_pred cCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCccc---ccccccceeecccccccCCCcccccCCCC--CCEEEccCC
Q 047985 278 SLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASF---GNLRSLRTLDVYECKFSGQIPSSLSNLTH--LSFLDFSLN 352 (930)
Q Consensus 278 s~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~Ls~n 352 (930)
++|++++..|..|..+++|+.|+|++|++++..+..+ ..+++|++|+|++|++++..+..+..++. ++.|++++|
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 5555555555555555555555555555554333333 34555555555555555433344444443 244555555
Q ss_pred CCCC
Q 047985 353 NFSG 356 (930)
Q Consensus 353 ~l~~ 356 (930)
++..
T Consensus 200 ~~~C 203 (361)
T 2xot_A 200 PLEC 203 (361)
T ss_dssp CEEC
T ss_pred CccC
Confidence 5543
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.68 E-value=3.4e-16 Score=161.02 Aligned_cols=135 Identities=24% Similarity=0.304 Sum_probs=92.2
Q ss_pred CCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEc
Q 047985 198 SSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDL 277 (930)
Q Consensus 198 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 277 (930)
++|++|++++|++++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|.++...+..|..+++|++|+|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 46666666666666555556666667777777777766666666677777777777777776544455666777777777
Q ss_pred cCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccC
Q 047985 278 SLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSG 332 (930)
Q Consensus 278 s~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 332 (930)
++|++++..|..|..+++|++|+|++|.+++..+..+..+++|++|++++|.+..
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 7777776666677777777777777777776666667777777777777776653
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=2.2e-16 Score=159.54 Aligned_cols=64 Identities=20% Similarity=0.308 Sum_probs=26.6
Q ss_pred ccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCC
Q 047985 218 LGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNR 281 (930)
Q Consensus 218 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 281 (930)
+..+++|++|++++|.+++..+..++.+++|++|++++|.+++..|..++.+++|++|++++|.
T Consensus 84 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 3344444444444444443333334444444444444444443333444444444444444443
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=2.9e-17 Score=198.89 Aligned_cols=90 Identities=21% Similarity=0.255 Sum_probs=40.0
Q ss_pred CcccCCCCCccEEEccCccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCC
Q 047985 528 PDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCG 607 (930)
Q Consensus 528 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 607 (930)
|..+..+..|+.|+|++|.+. .+|..+.++++|++|+|++|+|+ .+|..|+.+++|++|+|++|+|+ .+|..+ ..
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~--~~ 291 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL--GS 291 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSG--GG
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhh--cC
Confidence 334444444555555555544 33333344455555555555554 33444445555555555555544 223322 34
Q ss_pred CCCceEEECCCCcCc
Q 047985 608 FPKLRIIDLSKNRFT 622 (930)
Q Consensus 608 l~~L~~LdLs~N~l~ 622 (930)
+++|++|+|++|.++
T Consensus 292 l~~L~~L~L~~N~l~ 306 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT 306 (727)
T ss_dssp GTTCSEEECCSSCCC
T ss_pred CCCCCEEECCCCCCC
Confidence 445555555555443
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=9.8e-17 Score=161.30 Aligned_cols=113 Identities=24% Similarity=0.347 Sum_probs=91.0
Q ss_pred ccccEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeec
Q 047985 680 DILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNV 759 (930)
Q Consensus 680 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~l 759 (930)
+.|+.|+|++|+|++.+|..|+.+++|+.|+|++|++++..|..|+++++|++|||++|++++.+|..+..+++|++|++
T Consensus 54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence 45788889999998888999999999999999999999988888999999999999999999999999999999999999
Q ss_pred CCCcccccCCCCCCcCccCCcccCCCCCCCCCC
Q 047985 760 SDNHFTGPIPQGKQFATFDKTSFDGNSGLCGRP 792 (930)
Q Consensus 760 s~N~L~g~iP~~~~~~~~~~~s~~gn~~Lcg~~ 792 (930)
++|+++|..|.......+....+.++...|+.|
T Consensus 134 ~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 134 ASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp TTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred CCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 999999877632111112222345555566554
No 119
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=4.4e-16 Score=157.32 Aligned_cols=153 Identities=20% Similarity=0.318 Sum_probs=104.5
Q ss_pred cCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhcc
Q 047985 116 INLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLT 195 (930)
Q Consensus 116 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 195 (930)
..+++|++|++++|.+. .+| .+..+++|++|++++|. +. .+..+.
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~-------------------------------~~--~~~~l~ 85 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIH-------------------------------AT--NYNPIS 85 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCC-------------------------------CS--CCGGGT
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCC-------------------------------CC--cchhhh
Confidence 45566666666666666 444 46666666666666652 22 123566
Q ss_pred CCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCC-CCCCcchhhcCCCCCCE
Q 047985 196 YLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNN-LSGELPNSIGNLASLEQ 274 (930)
Q Consensus 196 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~ 274 (930)
.+++|++|++++|.+++..+..++.+++|++|++++|.+++..+..++.+++|++|++++|. ++ .+| .+..+++|++
T Consensus 86 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~ 163 (197)
T 4ezg_A 86 GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKS 163 (197)
T ss_dssp TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCE
T ss_pred cCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCE
Confidence 67777777777777776666777778888888888888877777778888888888888887 44 455 5777788888
Q ss_pred EEccCCCCCCCCCCCCCCCcCCcEEEccCCCCC
Q 047985 275 VDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFS 307 (930)
Q Consensus 275 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 307 (930)
|++++|++++. + .+..+++|++|++++|++.
T Consensus 164 L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 164 LNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp EECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred EECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 88888877653 2 5677777777777777764
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=1.7e-16 Score=168.07 Aligned_cols=167 Identities=23% Similarity=0.301 Sum_probs=70.6
Q ss_pred CCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCC
Q 047985 94 VHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKL 173 (930)
Q Consensus 94 ~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l 173 (930)
.+++.++++.+.+++ ++ .+..+++|++|++++|.++ .+| .++.+++|++|++++|.+ ..++. +.++
T Consensus 19 ~~l~~l~l~~~~i~~--~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i--------~~~~~-l~~l 84 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTD--LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQI--------SDLSP-LKDL 84 (263)
T ss_dssp HHHHHHHHTCSCTTS--EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCC--------CCCGG-GTTC
T ss_pred HHHHHHHhcCCCccc--cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCcc--------CCChh-hccC
Confidence 334444444444432 22 2444455555555555444 233 344444444444444432 11111 3333
Q ss_pred CCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEc
Q 047985 174 TNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDL 253 (930)
Q Consensus 174 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 253 (930)
++|++|++++|.+++. |. +.. ++|++|++++|++++. ..+..+++|++|++++|++++. + .+..+++|++|++
T Consensus 85 ~~L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L 157 (263)
T 1xeu_A 85 TKLEELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDL 157 (263)
T ss_dssp SSCCEEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEEC
T ss_pred CCCCEEECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEEC
Confidence 3333333333333331 11 111 4455555555544432 2344444555555555544433 1 3444444444444
Q ss_pred cCCCCCCCcchhhcCCCCCCEEEccCCCCC
Q 047985 254 LQNNLSGELPNSIGNLASLEQVDLSLNRFL 283 (930)
Q Consensus 254 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 283 (930)
++|.+++. ..+..+++|+.|++++|.++
T Consensus 158 ~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 158 HGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp TTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred CCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 44444433 33444444444444444443
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.63 E-value=1.2e-15 Score=153.34 Aligned_cols=137 Identities=22% Similarity=0.254 Sum_probs=116.0
Q ss_pred cceeecccccccCcCcccccccccCCceeecCCCccccccCc-ccCCCCCccEEEccCccccccCCccccCCCCCcEecc
Q 047985 488 LESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPD-NLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDL 566 (930)
Q Consensus 488 L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 566 (930)
-+.+++++|+++ .+|..+.. .+++|++++|++++..+. .+..+++|++|+|++|++++..|..|.++++|++|+|
T Consensus 10 ~~~l~~s~~~l~-~ip~~~~~---~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 10 GTTVDCTGRGLK-EIPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TTEEECTTSCCS-SCCSCCCT---TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCEEEcCCCCcC-cCccCCCC---CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 478889999885 56665543 489999999999866654 4788899999999999999988999999999999999
Q ss_pred cCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHH
Q 047985 567 GDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAF 630 (930)
Q Consensus 567 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~ 630 (930)
++|+|++..+..|..+++|++|+|++|++++..|..+ ..+++|++|+|++|++++..+..++
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l~~~ 147 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSLNLASNPFNCNCHLAWF 147 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS--TTCTTCCEEECTTCCBCCSGGGHHH
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh--hcCCCCCEEEeCCCCccCcCcchHH
Confidence 9999999988889999999999999999999887665 6789999999999999987775443
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.62 E-value=4.4e-16 Score=164.82 Aligned_cols=169 Identities=27% Similarity=0.314 Sum_probs=86.8
Q ss_pred CCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCCCCCchhccC
Q 047985 117 NLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTISSPIPHNLTY 196 (930)
Q Consensus 117 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 196 (930)
.+.+++.++++++.+.+. + .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+++..+ +.+
T Consensus 17 ~l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~--------~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~ 83 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ--------SLA-GMQFFTNLKELHLSHNQISDLSP--LKD 83 (263)
T ss_dssp HHHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC--------CCT-TGGGCTTCCEEECCSSCCCCCGG--GTT
T ss_pred HHHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcc--------cch-HHhhCCCCCEEECCCCccCCChh--hcc
Confidence 355667777777777743 3 4667777888888777431 222 34555666666666666555433 555
Q ss_pred CCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEE
Q 047985 197 LSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVD 276 (930)
Q Consensus 197 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 276 (930)
+++|++|++++|++++. |. +.. ++|++|++++|.+++. +.+..+++|++|++++|++++. + .++.+++|++|+
T Consensus 84 l~~L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~ 156 (263)
T 1xeu_A 84 LTKLEELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLD 156 (263)
T ss_dssp CSSCCEEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEE
T ss_pred CCCCCEEECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEE
Confidence 55555555555555532 21 112 4555555555555432 1344444555555555544432 2 344444444444
Q ss_pred ccCCCCCCCCCCCCCCCcCCcEEEccCCCCC
Q 047985 277 LSLNRFLGKVPSSLGNLTQLHWLSLASNDFS 307 (930)
Q Consensus 277 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 307 (930)
+++|++++. ..+..+++|+.|++++|.++
T Consensus 157 L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 157 LHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred CCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 444444433 33444444444444444443
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.55 E-value=1.2e-14 Score=142.69 Aligned_cols=132 Identities=25% Similarity=0.285 Sum_probs=64.9
Q ss_pred CCCCEEEccCCCCC-CCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEE
Q 047985 198 SSLTTLSLSGCDLR-GRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVD 276 (930)
Q Consensus 198 ~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 276 (930)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 34444444444444 34444444445555555555554443 3444555555555555555544454444555555555
Q ss_pred ccCCCCCCCC-CCCCCCCcCCcEEEccCCCCCCccC---cccccccccceeeccccccc
Q 047985 277 LSLNRFLGKV-PSSLGNLTQLHWLSLASNDFSGELP---ASFGNLRSLRTLDVYECKFS 331 (930)
Q Consensus 277 Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~L~~n~l~ 331 (930)
+++|++++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 5555554321 1344555555555555555553332 24455555555555555443
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.53 E-value=4.1e-14 Score=142.06 Aligned_cols=138 Identities=23% Similarity=0.243 Sum_probs=114.8
Q ss_pred cceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEeccc
Q 047985 488 LESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLG 567 (930)
Q Consensus 488 L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 567 (930)
-+.+++++|.++ .+|..+. . .|++|++++|+++ .+|..+..+++|++|+|++|++++..+..|.++++|++|+|+
T Consensus 12 ~~~l~~~~~~l~-~ip~~~~--~-~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 12 DTVVRCSNKGLK-VLPKGIP--R-DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TTEEECTTSCCS-SCCSCCC--T-TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCCC-cCCCCCC--C-CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 367888888887 5665443 2 4899999999998 778888889999999999999998888889999999999999
Q ss_pred CccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhh
Q 047985 568 DNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQC 632 (930)
Q Consensus 568 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~ 632 (930)
+|+|+++.|..|..+++|++|+|++|++++..+..+ ..+++|+.|++++|++.+.....++..
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~C~c~l~~l~~ 149 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF--NDLSALSHLAIGANPLYCDCNMQWLSD 149 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--TTCTTCCEEECCSSCEECSGGGHHHHH
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhh--hcCccccEEEeCCCCeecCCcCHHHHH
Confidence 999999988889999999999999999997765444 678999999999999987665544443
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.53 E-value=1.9e-14 Score=141.22 Aligned_cols=134 Identities=25% Similarity=0.245 Sum_probs=108.3
Q ss_pred CCCCCCEEEcCCccCC-CCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCE
Q 047985 172 KLTNLKELVLGDVTIS-SPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKE 250 (930)
Q Consensus 172 ~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 250 (930)
..++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3467777777777776 66777778888888888888888765 67888888889999888888877877778888999
Q ss_pred EEccCCCCCCCc-chhhcCCCCCCEEEccCCCCCCCCC---CCCCCCcCCcEEEccCCCCC
Q 047985 251 LDLLQNNLSGEL-PNSIGNLASLEQVDLSLNRFLGKVP---SSLGNLTQLHWLSLASNDFS 307 (930)
Q Consensus 251 L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p---~~l~~l~~L~~L~Ls~N~l~ 307 (930)
|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 999999888642 2678888899999999998886544 47888889999999988876
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.53 E-value=1.1e-14 Score=139.89 Aligned_cols=125 Identities=23% Similarity=0.240 Sum_probs=57.7
Q ss_pred CCCEEEccCCCCC-CCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEc
Q 047985 199 SLTTLSLSGCDLR-GRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDL 277 (930)
Q Consensus 199 ~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 277 (930)
+|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..++.+++|++|++++|.+++.+|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 4444444444444 34444444444455555555444443 34444455555555555554444444444555555555
Q ss_pred cCCCCCCC-CCCCCCCCcCCcEEEccCCCCCCccC---cccccccccceeec
Q 047985 278 SLNRFLGK-VPSSLGNLTQLHWLSLASNDFSGELP---ASFGNLRSLRTLDV 325 (930)
Q Consensus 278 s~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~L 325 (930)
++|++++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 55554432 22344444444444444444443322 23444444444444
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.52 E-value=1.2e-14 Score=159.52 Aligned_cols=102 Identities=17% Similarity=0.175 Sum_probs=74.9
Q ss_pred cccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCcc-EEEccCccccccCCccccCCCCCcEe
Q 047985 486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILK-VIDLSDNLLQGRIPRSLANCSNLEFL 564 (930)
Q Consensus 486 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L 564 (930)
++|+.+++++|+++...+.+|.++.+ |+.++|.+| ++..-+.+|.++.+|+ .+++.+ +++.+.+.+|.+|++|+.+
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~-L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKY-LLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTT-CCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCC-CCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 67888888887777666667777775 888888776 6544456677777777 777777 6666666777888888888
Q ss_pred cccCccccccCcccccCCCCCcEEEc
Q 047985 565 DLGDNQIRDIFPSWLGTLPDLNVLIL 590 (930)
Q Consensus 565 ~Ls~N~l~~~~p~~l~~l~~L~~L~L 590 (930)
++++|+++.+.+..|.++++|+.++.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 88777777777777777777777653
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.51 E-value=1.6e-14 Score=138.56 Aligned_cols=129 Identities=22% Similarity=0.243 Sum_probs=104.6
Q ss_pred CCCCCEEEcCCccCC-CCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEE
Q 047985 173 LTNLKELVLGDVTIS-SPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKEL 251 (930)
Q Consensus 173 l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 251 (930)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 456777888887877 67777778888888888888888765 678888889999999998888788888888889999
Q ss_pred EccCCCCCCC-cchhhcCCCCCCEEEccCCCCCCCCC---CCCCCCcCCcEEEccC
Q 047985 252 DLLQNNLSGE-LPNSIGNLASLEQVDLSLNRFLGKVP---SSLGNLTQLHWLSLAS 303 (930)
Q Consensus 252 ~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p---~~l~~l~~L~~L~Ls~ 303 (930)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999988863 34778888999999999998886654 4678888899888763
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.50 E-value=1.1e-14 Score=159.73 Aligned_cols=197 Identities=12% Similarity=0.073 Sum_probs=95.9
Q ss_pred CCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCC----CCCchhhhhcCCC--
Q 047985 173 LTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNK----LSDELPTFIGTLG-- 246 (930)
Q Consensus 173 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~----l~~~~p~~l~~l~-- 246 (930)
+++|++|++.+ .++...+.+|.+|++|++|++.+|.+....+.+|.++.++..+.+..+. .......+|.++.
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 56666666665 5555555556666666666666666554455555555555555443311 0111111121222
Q ss_pred ------------------------CCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEcc
Q 047985 247 ------------------------SLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLA 302 (930)
Q Consensus 247 ------------------------~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 302 (930)
+++.+.+.++-...........+++|+.|+|++|+++...+..|.++++|+.|+|.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 22222222221100000001125566666666666555444556666666666666
Q ss_pred CCCCCCccCcccccccccc-eeecccccccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEE
Q 047985 303 SNDFSGELPASFGNLRSLR-TLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLF 374 (930)
Q Consensus 303 ~N~l~~~~p~~l~~l~~L~-~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~ 374 (930)
+| ++...+.+|.++++|+ .+++.+ .++...+..|.++++|+.++++.|.++. ++...| .++++|+.++
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~-I~~~aF-~~~~~L~~ly 327 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT-LGDELF-GNGVPSKLIY 327 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE-ECTTTT-CTTCCCCEEE
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc-cchhhh-cCCcchhhhc
Confidence 55 5444455566666666 666655 4444444556666666666665555542 232333 5555555554
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.49 E-value=1.9e-13 Score=137.12 Aligned_cols=134 Identities=28% Similarity=0.307 Sum_probs=89.1
Q ss_pred cEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCC
Q 047985 225 IHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASN 304 (930)
Q Consensus 225 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N 304 (930)
+.+++++|.++. +|..+ .++|++|++++|.++ .+|..|..+++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 345555555542 23322 145666666666666 55566677777777777777777666666777777777777777
Q ss_pred CCCCccCcccccccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCchhH
Q 047985 305 DFSGELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDI 362 (930)
Q Consensus 305 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 362 (930)
++++..|..|..+++|++|+|++|++++..+..|..+++|+.|++++|++........
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~ 146 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQW 146 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHH
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHH
Confidence 7776666677777777777777777775555567777888888888888776555443
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.49 E-value=2.5e-13 Score=134.42 Aligned_cols=113 Identities=21% Similarity=0.233 Sum_probs=60.3
Q ss_pred CCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecc
Q 047985 247 SLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVY 326 (930)
Q Consensus 247 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 326 (930)
+|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 44444444444443333344455555555555555554444445555555555555555554444445555555556665
Q ss_pred cccccCCCcccccCCCCCCEEEccCCCCCCCCc
Q 047985 327 ECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMD 359 (930)
Q Consensus 327 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~ 359 (930)
+|++++..+..+..+++|++|++++|++.+..+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 555554444445556666666666666665544
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.46 E-value=4.7e-13 Score=132.38 Aligned_cols=133 Identities=23% Similarity=0.263 Sum_probs=114.7
Q ss_pred CCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccC
Q 047985 200 LTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSL 279 (930)
Q Consensus 200 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 279 (930)
.+.+++++++++. +|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 5788999998874 45444 36899999999999988777889999999999999999977777789999999999999
Q ss_pred CCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeecccccccCCCc
Q 047985 280 NRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYECKFSGQIP 335 (930)
Q Consensus 280 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 335 (930)
|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99998877788999999999999999997766677889999999999999987654
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=4.6e-15 Score=149.87 Aligned_cols=153 Identities=22% Similarity=0.320 Sum_probs=100.7
Q ss_pred CCCCCcEecccCccccccCcc------cccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHH
Q 047985 557 NCSNLEFLDLGDNQIRDIFPS------WLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAF 630 (930)
Q Consensus 557 ~l~~L~~L~Ls~N~l~~~~p~------~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~ 630 (930)
....++.++++.+.+++.+|. .+..+++|++|+|++|++++ +| .+..+++|+.|++++|.++ .+|.. +
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~---~~~~l~~L~~L~l~~n~l~-~l~~~-~ 89 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS---SLSGMENLRILSLGRNLIK-KIENL-D 89 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC---CHHHHTTCCEEEEEEEEEC-SCSSH-H
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc---ccccCCCCCEEECCCCCcc-cccch-h
Confidence 344555555555555555544 55566666666666666655 22 2244566666666666665 34422 1
Q ss_pred hhcccceeccccccccccccccCCCCCccceeeeEeeecccccccccccccccEEEcccccccccCchhcccccccceee
Q 047985 631 QCWNAMKVVNASELRYMQEVIPFNEGNGIYDYSLTMSNKGQMMSYKKIPDILTAVILSSNRFDGEIPTSISNLKGLQILS 710 (930)
Q Consensus 631 ~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ 710 (930)
.. ++.|+.|+|++|++++ +| .++.+++|+.|+
T Consensus 90 ~~----------------------------------------------~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 90 AV----------------------------------------------ADTLEELWISYNQIAS-LS-GIEKLVNLRVLY 121 (198)
T ss_dssp HH----------------------------------------------HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEE
T ss_pred hc----------------------------------------------CCcCCEEECcCCcCCc-CC-ccccCCCCCEEE
Confidence 11 2347788888888876 45 578888888888
Q ss_pred ccCccccccCc-ccccccCCCCeeeCCCCcCcccCCcc----------ccCCCCCCeeecCCCccc
Q 047985 711 LADNSLHGHIP-SCLGNLTDLESLDLSNNRFSGQIPQQ----------LVELTFLEFFNVSDNHFT 765 (930)
Q Consensus 711 Ls~N~l~g~ip-~~l~~L~~L~~LdLs~N~lsg~ip~~----------l~~L~~L~~L~ls~N~L~ 765 (930)
|++|++++..+ ..++.+++|++|++++|++++.+|.. +..++.|++|| +|.++
T Consensus 122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp ESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 88888885332 46888888888888888888877753 77788888887 66655
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=6.6e-13 Score=130.24 Aligned_cols=90 Identities=20% Similarity=0.224 Sum_probs=83.6
Q ss_pred ccccEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeec
Q 047985 680 DILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNV 759 (930)
Q Consensus 680 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~l 759 (930)
..++.|+|++|+|++..|..|+.+++|+.|+|++|+|++..|..|+++++|++|+|++|+|++..|..|..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 45899999999999999999999999999999999999888888899999999999999999877778999999999999
Q ss_pred CCCcccccCC
Q 047985 760 SDNHFTGPIP 769 (930)
Q Consensus 760 s~N~L~g~iP 769 (930)
++|++.+..+
T Consensus 110 ~~N~~~c~c~ 119 (170)
T 3g39_A 110 LNNPWDCACS 119 (170)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCCCCCch
Confidence 9999987655
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.36 E-value=1.6e-11 Score=137.52 Aligned_cols=266 Identities=11% Similarity=0.054 Sum_probs=176.4
Q ss_pred CCCCCCEEECCCCCCCCCCCchhccCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchh-hhh
Q 047985 92 KLVHLEWLDLAFNDFDGSEIPPEIINLSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLG-NLA 170 (930)
Q Consensus 92 ~l~~L~~L~Ls~n~~~~~~ip~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~-~~l 170 (930)
.+..++.+.+..+ ++.. -..+|.++ +|+.++|..+ +...-...|.++ +|+.+.+..+ + ..++ ..+
T Consensus 111 ~~~~l~~i~ip~~-i~~I-~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~-l--------~~I~~~aF 176 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKSI-PKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPST-L--------EQLKEDIF 176 (401)
T ss_dssp ECSSCSEEECCTT-CCEE-CTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCTT-C--------CEECSSTT
T ss_pred ecCCccEEEECCc-cCEe-hHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCCC-c--------cEehHHHh
Confidence 3466777777653 2211 12345554 6888888765 553334455553 6888888754 1 1221 356
Q ss_pred hCCCCCCEEEcCCccCCCCCchhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCE
Q 047985 171 DKLTNLKELVLGDVTISSPIPHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKE 250 (930)
Q Consensus 171 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 250 (930)
.++++|+.+++..|.++......|. +.+|+.+.+..+ ++.....+|.++++|+.+++..+ ++.....+|.+ .+|+.
T Consensus 177 ~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~ 252 (401)
T 4fdw_A 177 YYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITT 252 (401)
T ss_dssp TTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSE
T ss_pred hCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccE
Confidence 7788888888888777766666665 578888888744 66555667788888888888764 45445556666 67888
Q ss_pred EEccCCCCCCCcchhhcCCCCCCEEEccCCCCC-----CCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeec
Q 047985 251 LDLLQNNLSGELPNSIGNLASLEQVDLSLNRFL-----GKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDV 325 (930)
Q Consensus 251 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 325 (930)
+.+. +.++..-+.+|.++++|+.+++.+|.+. ...+..|.++++|+.++|. +.++..-..+|.++++|+.+.|
T Consensus 253 i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 253 VKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp EEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEE
T ss_pred EEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEE
Confidence 8884 4455455667888888888888877654 3445678888888888887 4466566677888888888888
Q ss_pred ccccccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhcc-ccccEEEccCCccc
Q 047985 326 YECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNH-KLLYHLFLSTNRLS 381 (930)
Q Consensus 326 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~-~~L~~L~Ls~n~l~ 381 (930)
..+ ++..-+..|.++ +|+.+++.+|.... ++...| ..+ ..+..|.+..+.+.
T Consensus 331 p~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~-l~~~~F-~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 331 PAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ-VFEKVW-YGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CTT-CCEECTTSSSSS-CCCEEEECCSSCCB-CCCSSC-CCSCTTCCEEEECGGGHH
T ss_pred Ccc-ccEEcHHhCCCC-CCCEEEEcCCCCcc-cccccc-cCCCCCccEEEeCHHHHH
Confidence 554 554555677788 88888888887653 222333 334 46778888776543
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.35 E-value=7.9e-13 Score=130.65 Aligned_cols=87 Identities=21% Similarity=0.210 Sum_probs=36.4
Q ss_pred hcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCc--ccccccccceeecccccccCCCccc----cc
Q 047985 266 IGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPA--SFGNLRSLRTLDVYECKFSGQIPSS----LS 339 (930)
Q Consensus 266 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~----l~ 339 (930)
++.+++|++|++++|++++..+..+..+++|++|++++|.++ .+|. .+..+++|++|++++|.++ .+|.. +.
T Consensus 60 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~ 137 (176)
T 1a9n_A 60 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIY 137 (176)
T ss_dssp CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHH
T ss_pred cccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHH
Confidence 333444444444444443322222234444444444444443 2222 3444444444444444444 22322 44
Q ss_pred CCCCCCEEEccCCCC
Q 047985 340 NLTHLSFLDFSLNNF 354 (930)
Q Consensus 340 ~l~~L~~L~Ls~n~l 354 (930)
.+++|+.|+++.|..
T Consensus 138 ~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 138 KVPQVRVLDFQKVKL 152 (176)
T ss_dssp HCTTCSEETTEECCH
T ss_pred HCCccceeCCCcCCH
Confidence 455555555555543
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.35 E-value=9.1e-13 Score=130.18 Aligned_cols=129 Identities=21% Similarity=0.224 Sum_probs=58.8
Q ss_pred CCCCCCEEEccCCCCCCCCcccccCCC-CCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCE
Q 047985 196 YLSSLTTLSLSGCDLRGRIPSSLGNIT-RLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQ 274 (930)
Q Consensus 196 ~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 274 (930)
++.+|++|++++|+++. +|. +..+. +|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 34455555555555542 222 22222 455555555555433 34444555555555555554332233344555555
Q ss_pred EEccCCCCCCCCCC--CCCCCcCCcEEEccCCCCCCccCcc----cccccccceeecccccc
Q 047985 275 VDLSLNRFLGKVPS--SLGNLTQLHWLSLASNDFSGELPAS----FGNLRSLRTLDVYECKF 330 (930)
Q Consensus 275 L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~L~~n~l 330 (930)
|++++|++. .+|. .+..+++|+.|++++|.++ .+|.. +..+++|++|++++|..
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 555555543 2232 4444555555555555544 22332 44445555555555443
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.34 E-value=3.7e-15 Score=150.58 Aligned_cols=110 Identities=20% Similarity=0.260 Sum_probs=42.6
Q ss_pred cccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCC
Q 047985 217 SLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQL 296 (930)
Q Consensus 217 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 296 (930)
.+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|++++ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 33334444444444444333 22 3333344444444444443 233333333444444444444432 12 23334444
Q ss_pred cEEEccCCCCCCccC-cccccccccceeeccccccc
Q 047985 297 HWLSLASNDFSGELP-ASFGNLRSLRTLDVYECKFS 331 (930)
Q Consensus 297 ~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~n~l~ 331 (930)
++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 444444444432111 23333444444444444443
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.34 E-value=2.3e-12 Score=126.77 Aligned_cols=90 Identities=21% Similarity=0.231 Sum_probs=81.0
Q ss_pred ccccEEEcccccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeec
Q 047985 680 DILTAVILSSNRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNV 759 (930)
Q Consensus 680 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~l 759 (930)
..++.|+|++|+|++.+|..|+++++|+.|+|++|+|++..+..|+++++|+.|||++|+|++..|..|..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 45899999999999999999999999999999999999877777899999999999999999776667999999999999
Q ss_pred CCCcccccCC
Q 047985 760 SDNHFTGPIP 769 (930)
Q Consensus 760 s~N~L~g~iP 769 (930)
++|++....+
T Consensus 113 ~~N~~~c~~~ 122 (174)
T 2r9u_A 113 YNNPWDCECR 122 (174)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCcccccc
Confidence 9999986443
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.33 E-value=4.5e-12 Score=124.25 Aligned_cols=109 Identities=21% Similarity=0.264 Sum_probs=69.8
Q ss_pred CceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccC
Q 047985 513 LSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKS 592 (930)
Q Consensus 513 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 592 (930)
.+.+++++|.++ .+|..+. +.|++|+|++|+|++..|..|.++++|++|+|++|+|+++.+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 445555555555 3444332 5566666666666666666666667777777777777766666666777777777777
Q ss_pred CcccccCCCCCccCCCCCceEEECCCCcCcccCC
Q 047985 593 NKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLP 626 (930)
Q Consensus 593 N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip 626 (930)
|++++..+..+ ..+++|++|+|++|++++..+
T Consensus 88 N~l~~~~~~~~--~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAF--DNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTT--TTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHh--cCCCCCCEEEeCCCCCCCCch
Confidence 77766554433 556777777777777776554
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.29 E-value=1e-10 Score=131.10 Aligned_cols=241 Identities=14% Similarity=0.128 Sum_probs=147.2
Q ss_pred CCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCccccCCchh-hhhhCCCCCCEEEcCCccCCCCCchhccC
Q 047985 118 LSSLSYLNLSSAAFSGQIPSEILELSKLAYLDLSHNSYYDPVELRKPSLG-NLADKLTNLKELVLGDVTISSPIPHNLTY 196 (930)
Q Consensus 118 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 196 (930)
+..++.+.+.++ +...-...|.++ +|+.+++..+- ..++ ..+.+ .+|+.+.+.. .+....+.+|.+
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~i---------~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~ 178 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEGL---------KSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYY 178 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTTC---------CEECTTTTTT-CCCCEEECCT-TCCEECSSTTTT
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCCc---------cEECHHhcCC-CCceEEEeCC-CccEehHHHhhC
Confidence 466677776543 332334455554 68888877661 1122 12333 3577777765 555555667777
Q ss_pred CCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCCEEE
Q 047985 197 LSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLASLEQVD 276 (930)
Q Consensus 197 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 276 (930)
|++|+.+++..|.++.....+|. ..+|+.+.+..+ ++.....+|.++++|+.+.+..+ ++..-..+|.+ .+|+.+.
T Consensus 179 c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~ 254 (401)
T 4fdw_A 179 CYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVK 254 (401)
T ss_dssp CTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEE
T ss_pred cccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEE
Confidence 77888888877777754444454 577777777743 55555667777777777777764 44334445555 6777777
Q ss_pred ccCCCCCCCCCCCCCCCcCCcEEEccCCCCC-----CccCcccccccccceeecccccccCCCcccccCCCCCCEEEccC
Q 047985 277 LSLNRFLGKVPSSLGNLTQLHWLSLASNDFS-----GELPASFGNLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSL 351 (930)
Q Consensus 277 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-----~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 351 (930)
+. +.++.....+|.++++|+.+++.+|.+. ...+..|.+|++|+.+++.+ .++......|.++++|+.+.+..
T Consensus 255 lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 255 LP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp EE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT
T ss_pred eC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc
Confidence 74 3455455667777777777777776654 24455677777777777763 35544455666777777777754
Q ss_pred CCCCCCCchhHHhhccccccEEEccCCccc
Q 047985 352 NNFSGKMDLDIFLVNHKLLYHLFLSTNRLS 381 (930)
Q Consensus 352 n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 381 (930)
+ ++ .+....| .++ +|+.+++++|...
T Consensus 333 ~-l~-~I~~~aF-~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 333 N-VT-QINFSAF-NNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp T-CC-EECTTSS-SSS-CCCEEEECCSSCC
T ss_pred c-cc-EEcHHhC-CCC-CCCEEEEcCCCCc
Confidence 4 32 2333333 455 6666666666443
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.29 E-value=1.2e-11 Score=121.61 Aligned_cols=107 Identities=19% Similarity=0.250 Sum_probs=61.4
Q ss_pred ceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCC
Q 047985 514 SILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSN 593 (930)
Q Consensus 514 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 593 (930)
+.+++++|+++ .+|..+. +.|++|+|++|++++..|..|.++++|++|+|++|+|+++.+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34455555543 3444332 45555555555555555555666666666666666666655555566666666666666
Q ss_pred cccccCCCCCccCCCCCceEEECCCCcCcccC
Q 047985 594 KFHGLIREPKTDCGFPKLRIIDLSKNRFTGKL 625 (930)
Q Consensus 594 ~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~i 625 (930)
+|++..+..+ ..+++|++|+|++|++....
T Consensus 92 ~l~~l~~~~~--~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAF--DNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTT--TTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHh--ccccCCCEEEeCCCCccccc
Confidence 6665543323 45666777777777776443
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.27 E-value=7.2e-11 Score=132.72 Aligned_cols=78 Identities=18% Similarity=0.151 Sum_probs=42.4
Q ss_pred CceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccC
Q 047985 513 LSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKS 592 (930)
Q Consensus 513 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 592 (930)
|+.+.+..+ ++..-..+|.++.+|+.++|.++ ++.+-..+|.+|++|+.+++..+ ++.+...+|.++++|+.+++..
T Consensus 299 L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 299 LTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred ccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 444444432 32222334555555666665433 44444556666666666666555 5555556666666666666654
Q ss_pred C
Q 047985 593 N 593 (930)
Q Consensus 593 N 593 (930)
+
T Consensus 376 ~ 376 (394)
T 4fs7_A 376 R 376 (394)
T ss_dssp G
T ss_pred C
Confidence 3
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.21 E-value=3.3e-10 Score=127.30 Aligned_cols=131 Identities=11% Similarity=-0.011 Sum_probs=61.4
Q ss_pred chhccCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccCCCCCCchhhhhcCCCCCCEEEccCCCCCCCcchhhcCCC
Q 047985 191 PHNLTYLSSLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFNKLSDELPTFIGTLGSLKELDLLQNNLSGELPNSIGNLA 270 (930)
Q Consensus 191 ~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 270 (930)
..+|.++.+|+.+.+..+ ++..-..+|.++++|+.+++..+ ++.....+|.++.+|+.+.+..+ +......+|.++.
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD 140 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence 355666667777766533 44344455666666666666543 33333445555566655554432 2222233444443
Q ss_pred CCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCCCCCccCcccccccccceeeccc
Q 047985 271 SLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASNDFSGELPASFGNLRSLRTLDVYE 327 (930)
Q Consensus 271 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 327 (930)
.++....... ......+|.++++|+.+.+.++. .......|.++.+|+.+++..
T Consensus 141 ~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 141 FKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp CSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCT
T ss_pred ccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCC
Confidence 3222222211 11222445555555555554332 223333444555555555443
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.16 E-value=1.3e-12 Score=145.04 Aligned_cols=86 Identities=29% Similarity=0.355 Sum_probs=36.5
Q ss_pred CCCCEEEccCCCCCCC----CcccccCCCCCcEEEccCCCCCCc----hhhhhcCCCCCCEEEccCCCCCCC----cchh
Q 047985 198 SSLTTLSLSGCDLRGR----IPSSLGNITRLIHLDLSFNKLSDE----LPTFIGTLGSLKELDLLQNNLSGE----LPNS 265 (930)
Q Consensus 198 ~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~ 265 (930)
++|++|+|++|.++.. ++..+..+++|++|+|++|.+++. ++..+...++|++|+|++|.++.. ++..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 4444555554444321 222233444455555555544432 123334444455555555544431 2222
Q ss_pred hcCCCCCCEEEccCCCCC
Q 047985 266 IGNLASLEQVDLSLNRFL 283 (930)
Q Consensus 266 l~~l~~L~~L~Ls~n~l~ 283 (930)
+...++|++|+|++|.++
T Consensus 235 L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 235 AREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHCSSCCEEECTTSSCC
T ss_pred HHhCCCCCEEeccCCCCC
Confidence 333344444444444443
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.12 E-value=1.7e-12 Score=144.11 Aligned_cols=135 Identities=22% Similarity=0.239 Sum_probs=68.1
Q ss_pred CCCCEEEccCCCCCCCCcccc-cCCCCCcEEEccCCCCCCchhhhh-----cCCCCCCEEEccCCCCCC----Ccchhhc
Q 047985 198 SSLTTLSLSGCDLRGRIPSSL-GNITRLIHLDLSFNKLSDELPTFI-----GTLGSLKELDLLQNNLSG----ELPNSIG 267 (930)
Q Consensus 198 ~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~----~~p~~l~ 267 (930)
++|++|+|++|.++......+ ..+++|++|+|++|.++......+ ...++|++|+|++|.++. .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 455555555555543211111 123455666666666654433332 234566666666666543 2333445
Q ss_pred CCCCCCEEEccCCCCCCC----CCCCCCCCcCCcEEEccCCCCCCc----cCcccccccccceeecccccccC
Q 047985 268 NLASLEQVDLSLNRFLGK----VPSSLGNLTQLHWLSLASNDFSGE----LPASFGNLRSLRTLDVYECKFSG 332 (930)
Q Consensus 268 ~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~n~l~~ 332 (930)
.+++|++|+|++|.++.. ++..+...++|++|+|++|.++.. ++..+...++|++|+|++|.++.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 566666666666665432 233344555666666666666532 22233344556666666665553
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.09 E-value=1.4e-10 Score=128.10 Aligned_cols=86 Identities=19% Similarity=0.200 Sum_probs=65.9
Q ss_pred ccccEEEccc-ccccccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeee
Q 047985 680 DILTAVILSS-NRFDGEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFN 758 (930)
Q Consensus 680 ~~L~~L~Ls~-N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ 758 (930)
..|+.|+|++ |+|++..|..|+++++|+.|+|++|+|++.+|..|++|++|+.|||++|+|++..|..+..++ |+.|+
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~ 109 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELV 109 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEE
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEE
Confidence 3477888875 888877777788888888888888888877777788888888888888888766555566565 88888
Q ss_pred cCCCcccc
Q 047985 759 VSDNHFTG 766 (930)
Q Consensus 759 ls~N~L~g 766 (930)
|++|++..
T Consensus 110 l~~N~~~c 117 (347)
T 2ifg_A 110 LSGNPLHC 117 (347)
T ss_dssp CCSSCCCC
T ss_pred eeCCCccC
Confidence 88887764
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.07 E-value=3.7e-10 Score=124.59 Aligned_cols=113 Identities=20% Similarity=0.177 Sum_probs=72.5
Q ss_pred eeecCCC-ccccccCcccCCCCCccEEEccC-ccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccC
Q 047985 515 ILDLQHN-KFSGTIPDNLLKGNILKVIDLSD-NLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKS 592 (930)
Q Consensus 515 ~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 592 (930)
.++++++ +++ .+|. +..+++|++|+|++ |+|++..+..|.++++|+.|+|++|+|+++.|..|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3455555 555 3555 66666666777764 666666666677777777777777777777666777777777777777
Q ss_pred CcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhh
Q 047985 593 NKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQC 632 (930)
Q Consensus 593 N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~ 632 (930)
|+|++..+..+ ..++ |+.|+|++|++.......++..
T Consensus 90 N~l~~~~~~~~--~~~~-L~~l~l~~N~~~c~c~l~~~~~ 126 (347)
T 2ifg_A 90 NALESLSWKTV--QGLS-LQELVLSGNPLHCSCALRWLQR 126 (347)
T ss_dssp SCCSCCCSTTT--CSCC-CCEEECCSSCCCCCGGGHHHHH
T ss_pred CccceeCHHHc--ccCC-ceEEEeeCCCccCCCccHHHHH
Confidence 77776554433 2233 7777777777776554444443
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.90 E-value=5.9e-08 Score=108.79 Aligned_cols=85 Identities=15% Similarity=0.175 Sum_probs=38.7
Q ss_pred ccCCCCCccEEEccCccccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCC
Q 047985 530 NLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFP 609 (930)
Q Consensus 530 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~ 609 (930)
.|.++.+|+.++|.++ ++.+-..+|.+|.+|+.+.|..+ ++.+...+|.++.+|+.+++.++..... .+....
T Consensus 306 aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~~-----~~~~~~ 378 (394)
T 4gt6_A 306 VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQWN-----AISTDS 378 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHHH-----TCBCCC
T ss_pred eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeehh-----hhhccC
Confidence 4444555555555433 44344455666666666666433 5555555566666666666666543221 113345
Q ss_pred CceEEECCCCcC
Q 047985 610 KLRIIDLSKNRF 621 (930)
Q Consensus 610 ~L~~LdLs~N~l 621 (930)
.|+.+.+..|.+
T Consensus 379 ~L~~i~i~~~~~ 390 (394)
T 4gt6_A 379 GLQNLPVAPGSI 390 (394)
T ss_dssp CC----------
T ss_pred CCCEEEeCCCCE
Confidence 566666655443
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.87 E-value=1.4e-07 Score=105.75 Aligned_cols=309 Identities=13% Similarity=0.135 Sum_probs=163.3
Q ss_pred hhhcCCC-CCCEEEccCCCCCCCcchhhcCCCCCCEEEccCCC---CCCCCCCCCCCCcCCcEEEccCCCCCCccCcccc
Q 047985 240 TFIGTLG-SLKELDLLQNNLSGELPNSIGNLASLEQVDLSLNR---FLGKVPSSLGNLTQLHWLSLASNDFSGELPASFG 315 (930)
Q Consensus 240 ~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~---l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 315 (930)
.+|.+++ .|+.+.+..+ ++..-..+|.++++|+.+.+..|. ++.....+|.++.+|+.+.+..+ ++......|.
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence 4566653 4777777643 554445667777777777776653 44334456666667766665443 3333344556
Q ss_pred cccccceeecccccccCCCcccccCCCCCCEEEccCCCCCCCCchhHHhhccccccEEEccCCcccccccccCCCCcccc
Q 047985 316 NLRSLRTLDVYECKFSGQIPSSLSNLTHLSFLDFSLNNFSGKMDLDIFLVNHKLLYHLFLSTNRLSLLTKATSNTTSHRF 395 (930)
Q Consensus 316 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L 395 (930)
.+.+|+.+.+..+ +.......|..+..|+.+.+..+ ++ .+....| ....|+.+.+..+
T Consensus 135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF--~~~~l~~i~ip~~----------------- 192 (394)
T 4gt6_A 135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAF--TGTALTQIHIPAK----------------- 192 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTT--TTCCCSEEEECTT-----------------
T ss_pred hhcccccccccce-eeeecccceecccccccccccce-ee-Eeccccc--cccceeEEEECCc-----------------
Confidence 6666666666433 22222334555566666655433 11 1111111 1123333333322
Q ss_pred ceeeeccCCCCCcchhhhcCCCcCEEeCCCCCCcCCCCccccCCCCCCceEEeccCccCcCCCCCCCcceEEeccCcCCC
Q 047985 396 RAVSLCSCDLTEIPKFLKNQHHLELLDLASNKINGKVPKWLLDPSMQNFGHLNLSHNFLTGFDQHPNTVNYLVSNNSLTG 475 (930)
Q Consensus 396 ~~L~l~~~~l~~ip~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ls~n~l~g 475 (930)
...--...+..+..++......+..... ...+.. ........ ..
T Consensus 193 --------~~~i~~~af~~c~~l~~~~~~~~~~~~~-~~~~~~-~~~~~~~~-------------------~~------- 236 (394)
T 4gt6_A 193 --------VTRIGTNAFSECFALSTITSDSESYPAI-DNVLYE-KSANGDYA-------------------LI------- 236 (394)
T ss_dssp --------CCEECTTTTTTCTTCCEEEECCSSSCBS-SSCEEE-ECTTSCEE-------------------EE-------
T ss_pred --------ccccccchhhhccccceecccccccccc-cceeec-cccccccc-------------------cc-------
Confidence 1111112334444555544433322110 000000 00000000 00
Q ss_pred CCchHHhhcccccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccc
Q 047985 476 EIPSWICNLSNRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSL 555 (930)
Q Consensus 476 ~ip~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 555 (930)
..+ .. ..+..+.+.. .++..-..+|..+.. |+.+.+..+..+ .-...|.++..|+.+.+. +.++.....+|
T Consensus 237 ~~~----~~-~~~~~~~ip~-~v~~i~~~aF~~c~~-L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF 307 (394)
T 4gt6_A 237 RYP----SQ-REDPAFKIPN-GVARIETHAFDSCAY-LASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVF 307 (394)
T ss_dssp ECC----TT-CCCSEEECCT-TEEEECTTTTTTCSS-CCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTT
T ss_pred ccc----cc-cccceEEcCC-cceEcccceeeeccc-ccEEecccccce-ecCcccccccccccccCC-CcccccCceee
Confidence 000 00 1233333321 222233445666664 888887665432 334567778888888886 45665666789
Q ss_pred cCCCCCcEecccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcC
Q 047985 556 ANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRF 621 (930)
Q Consensus 556 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l 621 (930)
.+|.+|+.++|..+ ++.+...+|.++.+|+.+.|..+ ++.+- ..++.++++|+.+++.++..
T Consensus 308 ~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~--~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 308 AGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIP--ESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCC--GGGGTTCTTCCEEEESSCHH
T ss_pred cCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEh--HhHhhCCCCCCEEEECCcee
Confidence 99999999999764 66677778899999999999654 44442 23457788999999988754
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.75 E-value=5.1e-09 Score=115.06 Aligned_cols=39 Identities=18% Similarity=0.299 Sum_probs=18.6
Q ss_pred CcCCcEEEccCCCCCCc----cCcccccccccceeeccccccc
Q 047985 293 LTQLHWLSLASNDFSGE----LPASFGNLRSLRTLDVYECKFS 331 (930)
Q Consensus 293 l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~n~l~ 331 (930)
+++|++|+|+.|.+.+. ++..+..+++|+.|+++.|.++
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 44555555555555432 2222334455555555555544
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.74 E-value=3.3e-09 Score=116.59 Aligned_cols=40 Identities=20% Similarity=0.392 Sum_probs=19.8
Q ss_pred CCCCCEEEccCCCCCCC----CCCCCCCCcCCcEEEccCCCCCC
Q 047985 269 LASLEQVDLSLNRFLGK----VPSSLGNLTQLHWLSLASNDFSG 308 (930)
Q Consensus 269 l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~ 308 (930)
+++|++|+|+.|.+.+. ++..+..+++|+.|+|++|.++.
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 44555555555554432 22333445556666666555543
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.51 E-value=4.9e-06 Score=92.52 Aligned_cols=104 Identities=13% Similarity=0.164 Sum_probs=55.3
Q ss_pred cccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEec
Q 047985 486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLD 565 (930)
Q Consensus 486 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 565 (930)
..|+.+.+..+ ++..-..+|.++.. |+.+.+..+ +...-...|.++.+|+.+.+.++.++..-..+|.+|.+|+.++
T Consensus 240 ~~L~~i~lp~~-v~~I~~~aF~~~~~-l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~ 316 (379)
T 4h09_A 240 KALDEIAIPKN-VTSIGSFLLQNCTA-LKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVT 316 (379)
T ss_dssp SSCCEEEECTT-CCEECTTTTTTCTT-CCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred ccceEEEcCCC-ccEeCccccceeeh-hcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEE
Confidence 34444444433 33233334444443 555555433 3322233455566666666666666655556666666666666
Q ss_pred ccCccccccCcccccCCCCCcEEEccCC
Q 047985 566 LGDNQIRDIFPSWLGTLPDLNVLILKSN 593 (930)
Q Consensus 566 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 593 (930)
|..+ ++.+...+|.++.+|+.+.+..+
T Consensus 317 lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 317 LPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 6543 55555556666666666666443
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.44 E-value=7.1e-06 Score=91.21 Aligned_cols=139 Identities=16% Similarity=0.156 Sum_probs=78.6
Q ss_pred cccceeecccccccCcCcccccccccCCceeecCCCccccccCcccCCCCCccEEEccCccccccCCccccCCCCCcEec
Q 047985 486 NRLESLDLSYNNLSGLLPQCLGNFSDWLSILDLQHNKFSGTIPDNLLKGNILKVIDLSDNLLQGRIPRSLANCSNLEFLD 565 (930)
Q Consensus 486 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 565 (930)
..|+.+.+..+ +.......+..+.. |+.+.+..+ ++..-...+..+.+|+.+.+..+ +.......|.+|++|+.++
T Consensus 217 ~~l~~i~~~~~-~~~i~~~~f~~~~~-L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~ 292 (379)
T 4h09_A 217 KNLKKITITSG-VTTLGDGAFYGMKA-LDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVV 292 (379)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTCSS-CCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEE
T ss_pred cccceeeeccc-eeEEccccccCCcc-ceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccccc
Confidence 44555555433 22233344555553 777776554 43333445666667777776543 4444455677777777777
Q ss_pred ccCccccccCcccccCCCCCcEEEccCCcccccCCCCCccCCCCCceEEECCCCcCcccCChHHHhhc
Q 047985 566 LGDNQIRDIFPSWLGTLPDLNVLILKSNKFHGLIREPKTDCGFPKLRIIDLSKNRFTGKLPSMAFQCW 633 (930)
Q Consensus 566 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~~~~~l 633 (930)
+.++.++.+....|.++.+|+.+.|..+ ++.+-. .++.++++|+.+.+..+ ++ .|...+|.+.
T Consensus 293 l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~--~aF~~C~~L~~i~ip~~-v~-~I~~~aF~~c 355 (379)
T 4h09_A 293 MDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQV--YAFKNCKALSTISYPKS-IT-LIESGAFEGS 355 (379)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECT--TTTTTCTTCCCCCCCTT-CC-EECTTTTTTS
T ss_pred ccccccceehhhhhcCCCCCCEEEcCcc-ccEEHH--HHhhCCCCCCEEEECCc-cC-EEchhHhhCC
Confidence 7777776666667777777777777543 433322 23355666777766544 32 4444555544
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.30 E-value=1.9e-07 Score=97.14 Aligned_cols=84 Identities=21% Similarity=0.281 Sum_probs=62.1
Q ss_pred EEcccccc---cccCchhcccccccceeeccCccccc--cCcccccccCCCCeeeCCCCcCcccCCccccCCC--CCCee
Q 047985 685 VILSSNRF---DGEIPTSISNLKGLQILSLADNSLHG--HIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELT--FLEFF 757 (930)
Q Consensus 685 L~Ls~N~l---~g~ip~~l~~l~~L~~L~Ls~N~l~g--~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~--~L~~L 757 (930)
++++.|+. .+.++....+++.|+.|+||+|+|++ .+|..++.+++|+.|||++|+|++. ..+..+. .|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 56666743 22233333567889999999999988 5667788889999999999999875 3344444 89999
Q ss_pred ecCCCcccccCCC
Q 047985 758 NVSDNHFTGPIPQ 770 (930)
Q Consensus 758 ~ls~N~L~g~iP~ 770 (930)
+|++|++++.+|.
T Consensus 226 ~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 226 WLDGNSLCDTFRD 238 (267)
T ss_dssp ECTTSTTGGGCSS
T ss_pred EccCCcCccccCc
Confidence 9999999988774
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.28 E-value=3.5e-07 Score=90.52 Aligned_cols=39 Identities=26% Similarity=0.227 Sum_probs=16.5
Q ss_pred CCCCcEEEccCCCCCCc----hhhhhcCCCCCCEEEc--cCCCCC
Q 047985 221 ITRLIHLDLSFNKLSDE----LPTFIGTLGSLKELDL--LQNNLS 259 (930)
Q Consensus 221 l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L--~~n~l~ 259 (930)
.+.|++|+|++|.|++. +...+...++|++|+| ++|.++
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 34444444444444432 2233333444444444 444443
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.26 E-value=1.8e-07 Score=92.53 Aligned_cols=16 Identities=6% Similarity=-0.060 Sum_probs=8.0
Q ss_pred cCCCCCCEEEccCCCC
Q 047985 243 GTLGSLKELDLLQNNL 258 (930)
Q Consensus 243 ~~l~~L~~L~L~~n~l 258 (930)
...++|++|+|++|.+
T Consensus 148 ~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 148 EKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHCSSCCEEECCCSSH
T ss_pred HhCCCcCEEeccCCCC
Confidence 3344555555555544
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.25 E-value=6.1e-07 Score=93.33 Aligned_cols=78 Identities=23% Similarity=0.285 Sum_probs=66.7
Q ss_pred cccccEEEcccccccc--cCchhcccccccceeeccCccccccCcccccccC--CCCeeeCCCCcCcccCCc-------c
Q 047985 679 PDILTAVILSSNRFDG--EIPTSISNLKGLQILSLADNSLHGHIPSCLGNLT--DLESLDLSNNRFSGQIPQ-------Q 747 (930)
Q Consensus 679 ~~~L~~L~Ls~N~l~g--~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~--~L~~LdLs~N~lsg~ip~-------~ 747 (930)
++.|+.|+||+|+|++ .+|..++.+++|+.|+|++|+|++. ..+..++ +|++|+|++|.+++.+|. .
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 4579999999999998 6678888999999999999999975 4456666 999999999999998873 3
Q ss_pred ccCCCCCCeee
Q 047985 748 LVELTFLEFFN 758 (930)
Q Consensus 748 l~~L~~L~~L~ 758 (930)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 67789998887
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.65 E-value=2.9e-05 Score=74.76 Aligned_cols=34 Identities=3% Similarity=0.001 Sum_probs=14.3
Q ss_pred CCCEEEccCCCCCCCCcccccCCCCCcEEEccCC
Q 047985 199 SLTTLSLSGCDLRGRIPSSLGNITRLIHLDLSFN 232 (930)
Q Consensus 199 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 232 (930)
.|++||+++|.++..--..+..+++|++|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 3444444444443332233344444444444444
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.62 E-value=2e-05 Score=75.88 Aligned_cols=83 Identities=12% Similarity=0.193 Sum_probs=44.6
Q ss_pred CCCEEEccCCCCCCCCCCCCCCCcCCcEEEccCCC-CCCccCcccccc----cccceeeccccc-ccCCCcccccCCCCC
Q 047985 271 SLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLASND-FSGELPASFGNL----RSLRTLDVYECK-FSGQIPSSLSNLTHL 344 (930)
Q Consensus 271 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l----~~L~~L~L~~n~-l~~~~p~~l~~l~~L 344 (930)
.|+.||++++.++..--..+..+++|++|+|++|. ++..--..+..+ ++|++|+|++|. ++...-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555444333344555556666666553 443322333332 356666666663 554433455667777
Q ss_pred CEEEccCCC
Q 047985 345 SFLDFSLNN 353 (930)
Q Consensus 345 ~~L~Ls~n~ 353 (930)
+.|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 777777765
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.84 E-value=0.0009 Score=65.61 Aligned_cols=15 Identities=27% Similarity=0.204 Sum_probs=7.0
Q ss_pred CCCCcEEEccCCCCC
Q 047985 221 ITRLIHLDLSFNKLS 235 (930)
Q Consensus 221 l~~L~~L~Ls~n~l~ 235 (930)
-+.|++|+|+.|.|.
T Consensus 97 N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 97 SPSLRVLNVESNFLT 111 (197)
T ss_dssp CSSCCEEECCSSBCC
T ss_pred CCccCeEecCCCcCC
Confidence 344444444444444
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.64 E-value=0.0007 Score=66.40 Aligned_cols=70 Identities=13% Similarity=0.147 Sum_probs=35.4
Q ss_pred ccCCCCCCEEEccCC-CCCcc----CCccccCCCCCcEEEccCCCCCCCccccCCchhhhhhCCCCCCEEEcCCccCC
Q 047985 115 IINLSSLSYLNLSSA-AFSGQ----IPSEILELSKLAYLDLSHNSYYDPVELRKPSLGNLADKLTNLKELVLGDVTIS 187 (930)
Q Consensus 115 l~~l~~L~~L~Ls~n-~l~~~----~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~ 187 (930)
+.+-+.|++|+|+++ .+... +-..+..-+.|+.|+|++|.+.+.-. ..+...+..-+.|++|+|+.|.|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga---~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEA---RGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHH---TTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHH---HHHHHHHhcCCccCeEecCCCcCC
Confidence 445567777777774 55432 22334444566666666664322111 233344444445555555555544
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.57 E-value=0.0028 Score=57.98 Aligned_cols=56 Identities=23% Similarity=0.303 Sum_probs=28.7
Q ss_pred EEEccccccc-ccCchhcccccccceeeccCccccccCcccccccCCCCeeeCCCCcCc
Q 047985 684 AVILSSNRFD-GEIPTSISNLKGLQILSLADNSLHGHIPSCLGNLTDLESLDLSNNRFS 741 (930)
Q Consensus 684 ~L~Ls~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~ls 741 (930)
.+|.+++.++ ..+|..+. .+|+.|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5556666554 34444332 24555555555555444444555555555555555543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.52 E-value=0.0026 Score=58.20 Aligned_cols=57 Identities=19% Similarity=0.310 Sum_probs=48.1
Q ss_pred ceeeccCcccc-ccCcccccccCCCCeeeCCCCcCcccCCccccCCCCCCeeecCCCccc
Q 047985 707 QILSLADNSLH-GHIPSCLGNLTDLESLDLSNNRFSGQIPQQLVELTFLEFFNVSDNHFT 765 (930)
Q Consensus 707 ~~L~Ls~N~l~-g~ip~~l~~L~~L~~LdLs~N~lsg~ip~~l~~L~~L~~L~ls~N~L~ 765 (930)
..++.+++.++ ..+|..+. ++|+.|||++|+|+..-+..|..++.|++|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47899999997 47776554 47999999999999777777899999999999999885
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=27.59 E-value=49 Score=27.80 Aligned_cols=45 Identities=18% Similarity=0.207 Sum_probs=25.8
Q ss_pred ccccCCccccCCCCCcEecccCccccccCcccccCCCCCcEEEccC
Q 047985 547 LQGRIPRSLANCSNLEFLDLGDNQIRDIFPSWLGTLPDLNVLILKS 592 (930)
Q Consensus 547 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 592 (930)
++.+-..+|.+|++|+.+.|-.+ ++.+-...|.++.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33344456666666666666543 4444455666666666666654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=25.35 E-value=89 Score=26.18 Aligned_cols=38 Identities=13% Similarity=0.067 Sum_probs=17.2
Q ss_pred hhhcCCCCCCEEEccCCCCCCCCCCCCCCCcCCcEEEcc
Q 047985 264 NSIGNLASLEQVDLSLNRFLGKVPSSLGNLTQLHWLSLA 302 (930)
Q Consensus 264 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 302 (930)
..|.++++|+.+.|..+ ++..-..+|.++.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 34445555555555432 232333444455555544443
No 167
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=22.99 E-value=28 Score=19.53 Aligned_cols=10 Identities=40% Similarity=1.149 Sum_probs=7.4
Q ss_pred CCCCcccceE
Q 047985 53 IDCCSWDGVQ 62 (930)
Q Consensus 53 ~~~C~w~gv~ 62 (930)
...|+|+|..
T Consensus 5 dgacswrgle 14 (23)
T 3ox7_P 5 DGACSWRGLE 14 (26)
T ss_pred Ccccccccch
Confidence 3569999865
Done!