Query 047986
Match_columns 134
No_of_seqs 188 out of 1212
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 05:09:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047986.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047986hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0483 Transcription factor H 99.7 2.6E-18 5.6E-23 134.0 5.5 84 1-87 83-166 (198)
2 KOG0489 Transcription factor z 99.1 6.2E-12 1.4E-16 101.5 -1.5 27 1-27 192-218 (261)
3 KOG0848 Transcription factor C 99.0 1E-10 2.2E-15 94.9 0.7 27 1-27 232-258 (317)
4 KOG0488 Transcription factor B 98.9 2.3E-10 5E-15 94.7 -0.2 29 1-29 205-233 (309)
5 KOG0842 Transcription factor t 98.9 3.7E-10 8.1E-15 93.2 0.9 32 1-32 186-217 (307)
6 KOG0843 Transcription factor E 98.9 3.5E-10 7.5E-15 87.2 0.4 30 1-30 135-164 (197)
7 KOG0850 Transcription factor D 98.9 4.7E-10 1E-14 89.2 0.2 27 1-27 155-181 (245)
8 KOG0485 Transcription factor N 98.8 4.7E-10 1E-14 88.9 -0.2 26 1-26 137-162 (268)
9 KOG4577 Transcription factor L 98.8 7.2E-10 1.6E-14 91.0 0.2 45 1-45 200-244 (383)
10 KOG0492 Transcription factor M 98.6 8.2E-09 1.8E-13 81.4 1.3 26 2-27 178-203 (246)
11 KOG0844 Transcription factor E 98.6 1.7E-08 3.6E-13 83.7 0.8 29 1-29 214-242 (408)
12 KOG0494 Transcription factor C 98.5 1.4E-08 3.1E-13 82.4 -0.1 35 1-35 174-208 (332)
13 KOG0484 Transcription factor P 98.5 2E-08 4.3E-13 71.7 -0.6 27 1-27 50-76 (125)
14 KOG0847 Transcription factor, 98.4 3.3E-08 7.1E-13 78.8 -0.4 27 1-27 200-226 (288)
15 KOG2251 Homeobox transcription 98.4 7.8E-08 1.7E-12 76.2 0.3 29 1-29 70-98 (228)
16 KOG0493 Transcription factor E 98.3 7.5E-08 1.6E-12 78.4 -0.7 30 1-30 279-308 (342)
17 KOG0491 Transcription factor B 98.3 9E-08 1.9E-12 73.2 -1.6 27 1-27 133-159 (194)
18 PF00046 Homeobox: Homeobox do 98.2 1.2E-07 2.7E-12 59.0 -1.8 25 1-25 33-57 (57)
19 COG5576 Homeodomain-containing 98.1 5.9E-07 1.3E-11 68.0 0.1 29 1-29 84-112 (156)
20 cd00086 homeodomain Homeodomai 97.9 1.2E-06 2.5E-11 54.3 -1.8 26 1-26 33-58 (59)
21 smart00389 HOX Homeodomain. DN 97.8 1.5E-06 3.2E-11 53.6 -2.1 24 1-24 33-56 (56)
22 KOG0490 Transcription factor, 97.7 1E-05 2.3E-10 62.4 0.4 27 1-27 93-119 (235)
23 PF02183 HALZ: Homeobox associ 97.4 0.00079 1.7E-08 41.0 5.9 41 27-67 2-42 (45)
24 smart00340 HALZ homeobox assoc 97.4 0.00043 9.3E-09 41.7 4.5 33 26-58 1-33 (44)
25 TIGR01565 homeo_ZF_HD homeobox 97.4 3.6E-05 7.7E-10 49.4 -0.2 20 1-20 38-57 (58)
26 KOG0486 Transcription factor P 97.2 0.00012 2.6E-09 61.0 0.6 26 2-27 146-171 (351)
27 KOG0775 Transcription factor S 96.3 0.00089 1.9E-08 55.0 -0.3 25 1-25 209-233 (304)
28 KOG0849 Transcription factor P 96.3 0.0009 2E-08 56.5 -0.5 27 1-27 209-235 (354)
29 KOG3802 Transcription factor O 95.7 0.0026 5.5E-08 54.5 -0.1 27 1-27 327-353 (398)
30 PF02183 HALZ: Homeobox associ 95.0 0.078 1.7E-06 32.2 4.7 34 28-61 10-43 (45)
31 PF05920 Homeobox_KN: Homeobox 94.7 0.0025 5.5E-08 37.7 -2.3 22 1-22 19-40 (40)
32 PRK00888 ftsB cell division pr 93.6 0.25 5.4E-06 34.9 5.7 53 11-64 16-68 (105)
33 KOG3119 Basic region leucine z 93.4 0.53 1.1E-05 38.4 8.0 46 20-68 208-253 (269)
34 KOG0490 Transcription factor, 92.9 0.034 7.4E-07 42.7 0.3 27 1-27 186-212 (235)
35 PF00170 bZIP_1: bZIP transcri 92.0 1.9 4E-05 27.3 7.7 42 25-66 21-62 (64)
36 smart00338 BRLZ basic region l 91.9 1.6 3.5E-05 27.7 7.2 42 26-67 22-63 (65)
37 PF06156 DUF972: Protein of un 91.3 0.96 2.1E-05 32.2 6.2 41 25-65 17-57 (107)
38 PF06005 DUF904: Protein of un 91.2 1.7 3.8E-05 28.8 7.0 36 29-64 17-52 (72)
39 KOG4571 Activating transcripti 89.7 1.5 3.3E-05 36.4 6.9 44 25-68 243-286 (294)
40 PRK13169 DNA replication intia 89.2 1.6 3.5E-05 31.3 5.9 39 26-64 18-56 (110)
41 PF06005 DUF904: Protein of un 89.1 2.9 6.3E-05 27.7 6.7 44 24-67 19-62 (72)
42 PF00170 bZIP_1: bZIP transcri 88.4 3.4 7.3E-05 26.1 6.5 36 25-60 28-63 (64)
43 KOG0774 Transcription factor P 88.1 1.4 3E-05 36.6 5.5 26 1-26 224-249 (334)
44 PF07716 bZIP_2: Basic region 86.0 5 0.00011 24.6 6.2 30 29-58 24-53 (54)
45 PF10224 DUF2205: Predicted co 86.0 5.8 0.00013 26.9 6.9 47 22-68 15-61 (80)
46 PRK00888 ftsB cell division pr 84.9 3.2 7E-05 29.2 5.5 36 30-65 27-62 (105)
47 smart00338 BRLZ basic region l 84.7 5.7 0.00012 25.1 6.1 34 27-60 30-63 (65)
48 PRK13922 rod shape-determining 84.1 3.7 8E-05 32.9 6.2 39 30-68 69-110 (276)
49 KOG4196 bZIP transcription fac 83.7 11 0.00024 27.9 8.0 35 31-65 82-116 (135)
50 KOG4005 Transcription factor X 83.3 5.6 0.00012 32.5 6.8 37 17-53 82-120 (292)
51 KOG4343 bZIP transcription fac 81.8 3.7 8E-05 37.1 5.7 37 27-63 299-335 (655)
52 PRK09413 IS2 repressor TnpA; R 81.4 1.4 3.1E-05 31.3 2.5 17 1-17 35-51 (121)
53 PRK15422 septal ring assembly 80.9 14 0.0003 25.1 6.9 30 25-54 13-42 (79)
54 PF07407 Seadorna_VP6: Seadorn 80.8 3.3 7.2E-05 35.3 4.8 32 31-62 33-64 (420)
55 KOG0773 Transcription factor M 80.8 0.83 1.8E-05 37.8 1.3 29 1-29 275-303 (342)
56 TIGR03752 conj_TIGR03752 integ 79.3 8.5 0.00018 34.1 7.0 21 22-42 72-92 (472)
57 KOG3335 Predicted coiled-coil 79.2 4.3 9.2E-05 31.6 4.6 47 14-67 90-136 (181)
58 KOG4005 Transcription factor X 79.1 7.4 0.00016 31.9 6.1 34 27-60 87-120 (292)
59 TIGR02209 ftsL_broad cell divi 78.7 12 0.00027 24.4 6.3 43 24-67 25-67 (85)
60 PF04977 DivIC: Septum formati 78.7 10 0.00022 24.1 5.8 37 27-63 21-57 (80)
61 PF15058 Speriolin_N: Sperioli 78.0 6.7 0.00014 30.9 5.4 36 31-67 6-41 (200)
62 PF01166 TSC22: TSC-22/dip/bun 77.9 5.8 0.00013 25.5 4.2 30 29-58 13-42 (59)
63 PF08961 DUF1875: Domain of un 76.6 0.81 1.7E-05 36.8 0.0 41 23-63 122-162 (243)
64 PF04977 DivIC: Septum formati 76.4 11 0.00024 24.0 5.5 36 28-63 15-50 (80)
65 TIGR03752 conj_TIGR03752 integ 75.5 8.4 0.00018 34.1 5.9 26 26-51 69-94 (472)
66 PF07334 IFP_35_N: Interferon- 75.3 8.1 0.00018 26.0 4.6 27 40-66 3-29 (76)
67 PF02344 Myc-LZ: Myc leucine z 72.9 15 0.00032 20.8 4.6 25 40-64 4-28 (32)
68 KOG4797 Transcriptional regula 72.9 27 0.00059 25.2 7.0 30 29-58 66-95 (123)
69 KOG4196 bZIP transcription fac 71.9 14 0.0003 27.5 5.4 28 40-67 77-104 (135)
70 TIGR00219 mreC rod shape-deter 71.4 15 0.00031 30.1 6.1 36 33-68 69-108 (283)
71 PRK10884 SH3 domain-containing 71.3 22 0.00048 27.9 6.9 17 43-59 138-154 (206)
72 PF12325 TMF_TATA_bd: TATA ele 70.8 33 0.00072 24.8 7.3 44 20-63 20-63 (120)
73 PF04880 NUDE_C: NUDE protein, 70.7 5.6 0.00012 30.5 3.3 22 44-65 24-45 (166)
74 PF14645 Chibby: Chibby family 70.1 22 0.00048 25.5 6.2 47 15-61 53-102 (116)
75 PF08172 CASP_C: CASP C termin 69.3 20 0.00043 29.0 6.4 45 20-64 90-134 (248)
76 KOG1146 Homeobox protein [Gene 69.0 1.8 3.9E-05 42.5 0.4 27 2-28 937-963 (1406)
77 TIGR02449 conserved hypothetic 68.7 30 0.00064 22.6 7.0 36 29-64 13-48 (65)
78 TIGR02894 DNA_bind_RsfA transc 68.2 28 0.00061 26.6 6.6 27 33-59 107-133 (161)
79 PF07407 Seadorna_VP6: Seadorn 68.2 8.6 0.00019 32.9 4.2 29 26-54 35-63 (420)
80 COG4467 Regulator of replicati 68.1 16 0.00035 26.3 5.0 36 27-62 19-54 (114)
81 PRK10884 SH3 domain-containing 66.6 36 0.00079 26.7 7.3 27 35-61 137-163 (206)
82 PF04999 FtsL: Cell division p 65.7 38 0.00083 22.7 7.3 40 27-67 39-78 (97)
83 PRK14127 cell division protein 64.8 29 0.00063 24.8 5.8 34 35-68 35-68 (109)
84 COG3074 Uncharacterized protei 64.4 40 0.00088 22.6 6.2 24 31-54 19-42 (79)
85 PF05377 FlaC_arch: Flagella a 64.0 34 0.00074 21.6 5.8 36 28-63 5-40 (55)
86 PF11932 DUF3450: Protein of u 63.5 38 0.00083 26.8 7.0 38 27-64 53-90 (251)
87 PRK13729 conjugal transfer pil 63.3 81 0.0018 28.1 9.4 52 16-67 62-120 (475)
88 TIGR02894 DNA_bind_RsfA transc 63.3 50 0.0011 25.3 7.1 32 30-61 111-142 (161)
89 PF13942 Lipoprotein_20: YfhG 63.1 48 0.001 25.8 7.1 57 13-69 102-165 (179)
90 PF04420 CHD5: CHD5-like prote 61.8 39 0.00084 25.3 6.4 42 27-68 37-90 (161)
91 PRK13922 rod shape-determining 60.9 23 0.00051 28.3 5.4 34 27-60 73-109 (276)
92 KOG4343 bZIP transcription fac 60.6 14 0.00029 33.6 4.2 33 29-61 308-340 (655)
93 TIGR02209 ftsL_broad cell divi 59.7 41 0.0009 21.8 5.6 31 33-63 27-57 (85)
94 PRK10722 hypothetical protein; 59.7 96 0.0021 25.3 8.6 38 27-64 162-203 (247)
95 PF10205 KLRAQ: Predicted coil 59.4 51 0.0011 23.4 6.2 38 25-62 35-72 (102)
96 PF14775 NYD-SP28_assoc: Sperm 58.2 45 0.00097 21.2 5.3 17 42-58 38-54 (60)
97 PF07058 Myosin_HC-like: Myosi 57.6 85 0.0018 26.7 8.2 26 11-42 109-134 (351)
98 TIGR00219 mreC rod shape-deter 57.1 29 0.00063 28.4 5.4 37 26-62 69-109 (283)
99 PF04728 LPP: Lipoprotein leuc 57.0 48 0.001 21.0 7.2 44 24-67 4-47 (56)
100 KOG0709 CREB/ATF family transc 57.0 14 0.0003 32.8 3.6 34 34-67 276-316 (472)
101 PF10883 DUF2681: Protein of u 56.8 48 0.001 22.8 5.6 23 39-61 32-54 (87)
102 PF11569 Homez: Homeodomain le 56.3 0.98 2.1E-05 28.8 -2.6 20 1-20 31-50 (56)
103 TIGR02449 conserved hypothetic 56.1 54 0.0012 21.3 6.7 33 31-63 8-40 (65)
104 PRK14127 cell division protein 55.7 35 0.00075 24.4 4.9 34 35-68 28-61 (109)
105 PF03234 CDC37_N: Cdc37 N term 55.6 55 0.0012 25.3 6.4 41 22-62 31-71 (177)
106 PRK15422 septal ring assembly 55.6 63 0.0014 21.9 6.9 36 29-64 24-66 (79)
107 PF06156 DUF972: Protein of un 55.0 73 0.0016 22.5 7.1 43 26-68 11-53 (107)
108 KOG0709 CREB/ATF family transc 54.9 17 0.00037 32.2 3.8 33 31-63 287-319 (472)
109 PF07989 Microtub_assoc: Micro 52.7 40 0.00086 22.3 4.6 27 41-67 40-66 (75)
110 KOG3119 Basic region leucine z 52.6 55 0.0012 26.6 6.3 22 47-68 225-246 (269)
111 PTZ00454 26S protease regulato 52.2 57 0.0012 28.0 6.6 35 30-64 29-63 (398)
112 KOG0977 Nuclear envelope prote 51.8 46 0.001 30.1 6.1 41 27-67 152-192 (546)
113 PRK14872 rod shape-determining 51.6 37 0.00079 28.9 5.2 26 30-55 57-82 (337)
114 PF10883 DUF2681: Protein of u 51.4 78 0.0017 21.8 6.0 25 29-53 29-53 (87)
115 PF07716 bZIP_2: Basic region 49.8 57 0.0012 19.7 5.0 30 35-64 23-52 (54)
116 KOG3156 Uncharacterized membra 49.6 29 0.00063 27.8 4.0 22 37-58 116-137 (220)
117 KOG4571 Activating transcripti 49.4 71 0.0015 26.7 6.4 29 36-64 247-275 (294)
118 KOG1962 B-cell receptor-associ 49.3 68 0.0015 25.7 6.1 19 49-67 191-209 (216)
119 PF08172 CASP_C: CASP C termin 49.0 58 0.0013 26.3 5.8 35 31-65 94-128 (248)
120 PTZ00454 26S protease regulato 48.5 84 0.0018 26.9 7.0 49 20-68 12-60 (398)
121 PF08606 Prp19: Prp19/Pso4-lik 48.3 71 0.0015 21.2 5.1 31 32-62 10-40 (70)
122 PF05529 Bap31: B-cell recepto 48.2 41 0.00089 25.5 4.7 10 51-60 161-170 (192)
123 KOG2264 Exostosin EXT1L [Signa 47.7 64 0.0014 29.9 6.3 46 22-67 99-144 (907)
124 KOG3863 bZIP transcription fac 47.6 64 0.0014 29.6 6.3 41 27-67 508-548 (604)
125 PF11594 Med28: Mediator compl 47.5 59 0.0013 23.2 5.0 55 10-67 18-72 (106)
126 PF07888 CALCOCO1: Calcium bin 47.4 2.2E+02 0.0048 25.9 10.1 29 36-64 423-451 (546)
127 COG2919 Septum formation initi 47.3 85 0.0018 22.2 5.9 31 29-59 56-86 (117)
128 COG4026 Uncharacterized protei 46.3 1.3E+02 0.0028 24.6 7.3 14 47-60 173-186 (290)
129 PF10224 DUF2205: Predicted co 45.9 92 0.002 21.0 6.6 40 24-63 24-63 (80)
130 PF11932 DUF3450: Protein of u 45.1 1.3E+02 0.0028 23.8 7.2 37 25-61 58-94 (251)
131 PF04880 NUDE_C: NUDE protein, 45.0 21 0.00045 27.4 2.5 28 37-65 24-51 (166)
132 PF04899 MbeD_MobD: MbeD/MobD 44.0 92 0.002 20.5 6.7 41 27-67 25-65 (70)
133 PF13815 Dzip-like_N: Iguana/D 43.7 1.1E+02 0.0025 21.5 6.5 30 35-64 85-114 (118)
134 COG3074 Uncharacterized protei 43.5 99 0.0021 20.7 6.1 34 29-62 24-64 (79)
135 COG2919 Septum formation initi 43.2 1E+02 0.0022 21.8 5.8 41 26-66 46-86 (117)
136 PF12709 Kinetocho_Slk19: Cent 43.1 1.1E+02 0.0024 21.1 6.1 30 35-64 47-76 (87)
137 PF04111 APG6: Autophagy prote 42.1 1.4E+02 0.0031 24.7 7.3 9 38-46 65-73 (314)
138 KOG2391 Vacuolar sorting prote 42.0 1.2E+02 0.0026 26.1 6.8 19 46-64 248-266 (365)
139 PF06818 Fez1: Fez1; InterPro 41.9 1.1E+02 0.0023 24.3 6.1 42 21-62 1-42 (202)
140 KOG3156 Uncharacterized membra 41.8 1.3E+02 0.0027 24.2 6.5 38 31-68 102-140 (220)
141 PRK14872 rod shape-determining 41.0 92 0.002 26.5 6.0 21 27-47 61-81 (337)
142 KOG2252 CCAAT displacement pro 40.8 3.8 8.3E-05 36.8 -2.3 24 1-24 453-476 (558)
143 PRK13169 DNA replication intia 40.4 1.3E+02 0.0029 21.4 7.1 42 27-68 12-53 (110)
144 PF03980 Nnf1: Nnf1 ; InterPr 40.1 58 0.0013 22.4 4.0 24 32-55 82-105 (109)
145 PF15035 Rootletin: Ciliary ro 39.7 1.7E+02 0.0038 22.4 7.0 30 35-64 86-115 (182)
146 PF04999 FtsL: Cell division p 39.7 1.1E+02 0.0025 20.3 5.7 24 38-61 43-66 (97)
147 PRK10803 tol-pal system protei 39.3 79 0.0017 25.5 5.2 32 33-64 57-88 (263)
148 PF11382 DUF3186: Protein of u 39.1 86 0.0019 25.9 5.5 35 33-67 35-69 (308)
149 PF15372 DUF4600: Domain of un 38.3 80 0.0017 23.3 4.6 32 33-64 4-35 (129)
150 KOG1962 B-cell receptor-associ 38.2 92 0.002 24.9 5.3 34 31-64 166-199 (216)
151 PF10668 Phage_terminase: Phag 38.2 5 0.00011 25.8 -1.5 16 1-16 28-43 (60)
152 cd07429 Cby_like Chibby, a nuc 38.1 1E+02 0.0022 22.1 5.0 30 29-58 71-100 (108)
153 KOG0995 Centromere-associated 37.9 1.1E+02 0.0023 28.0 6.2 10 31-40 309-318 (581)
154 COG2433 Uncharacterized conser 37.8 1.2E+02 0.0025 28.1 6.4 27 35-61 434-460 (652)
155 PF04568 IATP: Mitochondrial A 37.8 1.4E+02 0.0031 20.9 7.2 44 24-67 56-99 (100)
156 PF07795 DUF1635: Protein of u 37.7 2.1E+02 0.0046 22.9 8.1 37 22-58 25-61 (214)
157 PTZ00361 26 proteosome regulat 37.7 1.4E+02 0.003 26.1 6.8 54 11-64 46-101 (438)
158 KOG0727 26S proteasome regulat 37.2 2E+02 0.0042 24.4 7.2 37 28-64 37-73 (408)
159 PF14662 CCDC155: Coiled-coil 37.1 1.8E+02 0.004 22.9 6.7 39 26-64 18-56 (193)
160 KOG0483 Transcription factor H 36.8 1.6E+02 0.0034 23.2 6.4 34 35-68 110-143 (198)
161 PF10481 CENP-F_N: Cenp-F N-te 35.7 2.5E+02 0.0054 23.5 7.6 21 47-67 112-132 (307)
162 PF12709 Kinetocho_Slk19: Cent 35.7 1.5E+02 0.0032 20.5 6.1 28 32-59 51-78 (87)
163 PF13443 HTH_26: Cro/C1-type H 35.4 7.2 0.00016 23.8 -1.1 35 1-35 16-50 (63)
164 cd04766 HTH_HspR Helix-Turn-He 35.2 45 0.00098 22.1 2.8 21 1-21 7-27 (91)
165 PF12808 Mto2_bdg: Micro-tubul 35.1 1.1E+02 0.0025 19.0 4.6 21 43-63 28-48 (52)
166 PF10473 CENP-F_leu_zip: Leuci 34.9 1.9E+02 0.0041 21.5 7.0 14 27-40 21-34 (140)
167 PF04111 APG6: Autophagy prote 34.8 1.9E+02 0.0041 24.0 6.9 26 35-60 55-80 (314)
168 PF07412 Geminin: Geminin; In 34.8 1.5E+02 0.0033 23.4 6.0 34 31-64 126-159 (200)
169 TIGR01242 26Sp45 26S proteasom 34.8 1.3E+02 0.0027 25.0 5.9 35 30-64 6-40 (364)
170 PF07106 TBPIP: Tat binding pr 34.4 94 0.002 23.0 4.7 20 48-67 113-132 (169)
171 PF14775 NYD-SP28_assoc: Sperm 34.4 1.2E+02 0.0026 19.1 5.2 34 34-68 24-57 (60)
172 PF14662 CCDC155: Coiled-coil 34.1 1.8E+02 0.0039 22.9 6.3 17 46-62 97-113 (193)
173 PF07989 Microtub_assoc: Micro 34.0 1.3E+02 0.0027 19.9 4.7 50 13-65 22-71 (75)
174 PF07412 Geminin: Geminin; In 33.9 1.1E+02 0.0024 24.2 5.1 17 47-63 135-151 (200)
175 COG2433 Uncharacterized conser 33.7 1.9E+02 0.0042 26.7 7.2 18 30-47 436-453 (652)
176 PRK13729 conjugal transfer pil 33.6 1.7E+02 0.0036 26.2 6.6 28 37-64 97-124 (475)
177 PF05377 FlaC_arch: Flagella a 33.2 1.3E+02 0.0028 19.0 5.6 31 35-65 5-35 (55)
178 TIGR01069 mutS2 MutS2 family p 32.8 1.2E+02 0.0027 28.3 6.0 12 2-13 489-500 (771)
179 PF08826 DMPK_coil: DMPK coile 32.6 1.4E+02 0.003 19.1 6.4 34 31-64 26-59 (61)
180 PRK00409 recombination and DNA 32.6 1.2E+02 0.0026 28.5 5.9 12 2-13 494-505 (782)
181 KOG2391 Vacuolar sorting prote 32.5 2E+02 0.0044 24.8 6.7 39 29-67 224-262 (365)
182 PF07888 CALCOCO1: Calcium bin 32.4 1.9E+02 0.0041 26.3 6.9 26 35-60 155-180 (546)
183 KOG3335 Predicted coiled-coil 32.3 2.4E+02 0.0053 22.0 8.5 25 44-68 106-130 (181)
184 KOG4403 Cell surface glycoprot 32.1 2.6E+02 0.0056 25.1 7.5 22 13-34 229-253 (575)
185 PF13815 Dzip-like_N: Iguana/D 31.8 1.3E+02 0.0028 21.2 4.8 29 37-65 80-108 (118)
186 KOG3623 Homeobox transcription 31.6 8.8 0.00019 36.1 -1.6 26 2-27 590-615 (1007)
187 KOG2483 Upstream transcription 31.6 2.8E+02 0.006 22.4 8.7 31 26-56 108-138 (232)
188 PF10234 Cluap1: Clusterin-ass 31.2 3E+02 0.0065 22.7 7.4 48 21-68 167-214 (267)
189 PF10482 CtIP_N: Tumour-suppre 31.1 1.6E+02 0.0036 21.4 5.2 15 45-59 104-118 (120)
190 PF10473 CENP-F_leu_zip: Leuci 30.4 2.3E+02 0.0049 21.0 6.6 33 31-63 53-85 (140)
191 PF15397 DUF4618: Domain of un 30.4 1.9E+02 0.0042 23.7 6.1 38 30-67 186-223 (258)
192 PF06637 PV-1: PV-1 protein (P 30.0 3.2E+02 0.0069 24.0 7.5 28 40-67 352-379 (442)
193 PF11461 RILP: Rab interacting 29.7 1.4E+02 0.0031 19.1 4.2 31 37-67 3-33 (60)
194 PF10174 Cast: RIM-binding pro 29.7 1.7E+02 0.0037 27.7 6.4 54 13-67 35-89 (775)
195 PRK03992 proteasome-activating 29.2 2.2E+02 0.0048 24.0 6.6 35 30-64 15-49 (389)
196 PF12718 Tropomyosin_1: Tropom 29.1 2.3E+02 0.0051 20.7 7.1 42 26-67 24-65 (143)
197 PF07334 IFP_35_N: Interferon- 28.9 1.6E+02 0.0036 19.7 4.6 26 34-59 4-29 (76)
198 KOG0249 LAR-interacting protei 28.9 1.9E+02 0.0041 27.5 6.4 43 22-64 215-257 (916)
199 PF15397 DUF4618: Domain of un 28.9 2.5E+02 0.0054 23.0 6.5 46 23-68 186-231 (258)
200 KOG3863 bZIP transcription fac 28.7 2.6E+02 0.0056 25.8 7.1 54 14-67 500-555 (604)
201 PF07047 OPA3: Optic atrophy 3 28.1 1E+02 0.0022 22.3 3.8 10 15-24 93-102 (134)
202 COG4985 ABC-type phosphate tra 27.8 1.6E+02 0.0036 24.2 5.2 21 106-126 260-280 (289)
203 smart00787 Spc7 Spc7 kinetocho 27.2 3.6E+02 0.0079 22.4 7.4 37 22-58 210-246 (312)
204 PF00038 Filament: Intermediat 27.0 3.1E+02 0.0067 21.9 6.9 8 12-19 189-196 (312)
205 PF15035 Rootletin: Ciliary ro 27.0 2.9E+02 0.0063 21.2 7.1 31 31-61 89-119 (182)
206 PF09766 FimP: Fms-interacting 27.0 3.1E+02 0.0068 23.1 7.1 35 30-64 101-135 (355)
207 COG1792 MreC Cell shape-determ 26.6 2.9E+02 0.0063 22.6 6.6 39 30-68 66-107 (284)
208 KOG4552 Vitamin-D-receptor int 26.2 2.6E+02 0.0056 22.7 6.0 21 44-64 74-94 (272)
209 COG4942 Membrane-bound metallo 26.1 3.1E+02 0.0067 24.1 6.9 9 31-39 46-54 (420)
210 PF04218 CENP-B_N: CENP-B N-te 26.0 9.2 0.0002 23.4 -1.8 19 1-19 28-46 (53)
211 cd04769 HTH_MerR2 Helix-Turn-H 25.9 1.3E+02 0.0027 20.9 3.9 19 3-21 53-71 (116)
212 KOG3584 cAMP response element 25.6 1.3E+02 0.0029 25.4 4.4 19 48-66 323-341 (348)
213 PF04420 CHD5: CHD5-like prote 25.4 2.6E+02 0.0055 20.8 5.7 44 19-62 36-91 (161)
214 KOG3650 Predicted coiled-coil 25.4 2.6E+02 0.0056 20.0 6.2 31 35-65 68-98 (120)
215 cd07429 Cby_like Chibby, a nuc 25.0 2.4E+02 0.0053 20.1 5.2 33 36-68 71-103 (108)
216 PF07798 DUF1640: Protein of u 24.9 1.5E+02 0.0033 22.2 4.4 17 42-58 78-94 (177)
217 PF05529 Bap31: B-cell recepto 24.8 3E+02 0.0065 20.7 6.1 8 48-55 165-172 (192)
218 TIGR03689 pup_AAA proteasome A 24.6 2.7E+02 0.0058 25.0 6.4 35 34-68 5-39 (512)
219 PF05812 Herpes_BLRF2: Herpesv 24.6 1.7E+02 0.0037 21.3 4.4 18 41-58 7-24 (118)
220 KOG0999 Microtubule-associated 24.5 1.3E+02 0.0029 27.7 4.5 32 17-48 150-181 (772)
221 PF04849 HAP1_N: HAP1 N-termin 23.6 1.5E+02 0.0032 24.9 4.4 28 32-59 162-189 (306)
222 PF09726 Macoilin: Transmembra 23.2 2.2E+02 0.0047 26.6 5.8 33 21-53 543-575 (697)
223 COG1792 MreC Cell shape-determ 23.1 2.5E+02 0.0054 23.0 5.6 34 29-62 72-108 (284)
224 PF11853 DUF3373: Protein of u 22.9 92 0.002 27.9 3.2 27 38-64 32-58 (489)
225 PF03670 UPF0184: Uncharacteri 22.9 2.6E+02 0.0056 19.1 5.8 36 33-68 36-71 (83)
226 PF09744 Jnk-SapK_ap_N: JNK_SA 22.6 3.4E+02 0.0074 20.4 6.2 28 40-67 85-112 (158)
227 PRK11546 zraP zinc resistance 22.4 79 0.0017 23.7 2.3 41 24-64 62-109 (143)
228 PF14197 Cep57_CLD_2: Centroso 22.3 2.3E+02 0.005 18.4 6.9 15 46-60 49-63 (69)
229 PF10481 CENP-F_N: Cenp-F N-te 22.2 3.1E+02 0.0067 23.0 5.9 22 26-47 56-77 (307)
230 KOG0977 Nuclear envelope prote 22.0 3.1E+02 0.0068 24.9 6.3 25 42-66 160-184 (546)
231 PF12711 Kinesin-relat_1: Kine 21.6 2.8E+02 0.006 19.0 6.2 34 32-65 26-65 (86)
232 PF11544 Spc42p: Spindle pole 21.6 2.6E+02 0.0057 18.8 6.7 44 17-60 6-49 (76)
233 PF12777 MT: Microtubule-bindi 21.6 4.7E+02 0.01 21.7 7.5 40 28-67 247-286 (344)
234 KOG0614 cGMP-dependent protein 21.3 3.8E+02 0.0082 24.9 6.7 29 37-65 45-73 (732)
235 PF13600 DUF4140: N-terminal d 21.2 2.7E+02 0.0058 18.7 5.0 32 29-60 69-100 (104)
236 PF09730 BicD: Microtubule-ass 20.9 2E+02 0.0043 27.0 5.1 18 40-57 124-141 (717)
237 PF05615 THOC7: Tho complex su 20.9 3.2E+02 0.0069 19.4 7.0 39 29-67 73-111 (139)
238 KOG2008 BTK-associated SH3-dom 20.9 5.5E+02 0.012 22.2 7.3 22 40-61 193-214 (426)
239 PF09755 DUF2046: Uncharacteri 20.1 5.4E+02 0.012 21.7 7.1 33 29-61 33-65 (310)
No 1
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=99.73 E-value=2.6e-18 Score=133.99 Aligned_cols=84 Identities=37% Similarity=0.625 Sum_probs=71.2
Q ss_pred CcchhCCCCcccceecccchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQMLLASNPSATLLPSV 80 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l~~~~~~~~~~~~~ 80 (134)
||+.|||.+|||+|||||||+|||.++.+.+|..|+.+++.|..++.+|+.++..|..++..+....... .......
T Consensus 83 LAk~LgL~pRQVavWFQNRRARwK~kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~~~~---~~~~~~~ 159 (198)
T KOG0483|consen 83 LAKELGLQPRQVAVWFQNRRARWKTKQLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLKREMQKS---PENTLTM 159 (198)
T ss_pred HHHhhCCChhHHHHHHhhccccccchhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhccC---ccccccc
Confidence 6899999999999999999999999999999999999999999999999999999999998776555322 2333455
Q ss_pred CCCCCCC
Q 047986 81 STSGDND 87 (134)
Q Consensus 81 ~~S~~s~ 87 (134)
++.|...
T Consensus 160 ~~~~~~~ 166 (198)
T KOG0483|consen 160 CPNSESS 166 (198)
T ss_pred Ccccccc
Confidence 5666544
No 2
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only]
Probab=99.11 E-value=6.2e-12 Score=101.52 Aligned_cols=27 Identities=44% Similarity=0.768 Sum_probs=24.8
Q ss_pred CcchhCCCCcccceecccchhhHHHHh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHT 27 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~ 27 (134)
+|..|+|+|+||||||||||||||+..
T Consensus 192 iA~~L~LtErQIKIWFQNRRMK~Kk~~ 218 (261)
T KOG0489|consen 192 IAHALNLTERQIKIWFQNRRMKWKKEN 218 (261)
T ss_pred HHhhcchhHHHHHHHHHHHHHHHHHhh
Confidence 578899999999999999999999864
No 3
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription]
Probab=98.98 E-value=1e-10 Score=94.91 Aligned_cols=27 Identities=52% Similarity=0.971 Sum_probs=24.9
Q ss_pred CcchhCCCCcccceecccchhhHHHHh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHT 27 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~ 27 (134)
||.-|+|+||||||||||||+|.||..
T Consensus 232 LA~~LgLsERQVKIWFQNRRAKERK~n 258 (317)
T KOG0848|consen 232 LAATLGLSERQVKIWFQNRRAKERKDN 258 (317)
T ss_pred HHHhhCccHhhhhHhhhhhhHHHHHHH
Confidence 678899999999999999999999865
No 4
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=98.90 E-value=2.3e-10 Score=94.65 Aligned_cols=29 Identities=48% Similarity=0.758 Sum_probs=26.7
Q ss_pred CcchhCCCCcccceecccchhhHHHHhhH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTIE 29 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~~ 29 (134)
||++|||+..|||+||||||+|||++..+
T Consensus 205 LA~~LgLTdaQVKtWfQNRRtKWKrq~a~ 233 (309)
T KOG0488|consen 205 LAASLGLTDAQVKTWFQNRRTKWKRQTAE 233 (309)
T ss_pred HHHHcCCchhhHHHHHhhhhHHHHHHHHh
Confidence 68999999999999999999999997644
No 5
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription]
Probab=98.89 E-value=3.7e-10 Score=93.25 Aligned_cols=32 Identities=38% Similarity=0.675 Sum_probs=27.9
Q ss_pred CcchhCCCCcccceecccchhhHHHHhhHHHH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTIELDY 32 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~~~~~ 32 (134)
||..|+|+++||||||||||.|.|+++++..+
T Consensus 186 LA~~LrLT~TQVKIWFQNrRYK~KR~~~dk~~ 217 (307)
T KOG0842|consen 186 LASSLRLTPTQVKIWFQNRRYKTKRQQKDKAL 217 (307)
T ss_pred HHHhcCCCchheeeeeecchhhhhhhhhhhhh
Confidence 68899999999999999999999997655443
No 6
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=98.88 E-value=3.5e-10 Score=87.25 Aligned_cols=30 Identities=43% Similarity=0.675 Sum_probs=27.3
Q ss_pred CcchhCCCCcccceecccchhhHHHHhhHH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTIEL 30 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~~~ 30 (134)
||+.|+|++.||||||||||+|.|+.+.+.
T Consensus 135 LA~~L~LsetQVkvWFQNRRtk~kr~~~e~ 164 (197)
T KOG0843|consen 135 LAQSLSLSETQVKVWFQNRRTKHKRMQQED 164 (197)
T ss_pred HHHHcCCChhHhhhhhhhhhHHHHHHHHHh
Confidence 689999999999999999999999977554
No 7
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=98.85 E-value=4.7e-10 Score=89.23 Aligned_cols=27 Identities=44% Similarity=0.775 Sum_probs=25.1
Q ss_pred CcchhCCCCcccceecccchhhHHHHh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHT 27 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~ 27 (134)
||..|||+.+||||||||||.|.||..
T Consensus 155 LAAsLGLTQTQVKIWFQNrRSK~KKl~ 181 (245)
T KOG0850|consen 155 LAASLGLTQTQVKIWFQNRRSKFKKLK 181 (245)
T ss_pred HHHHhCCchhHhhhhhhhhHHHHHHHH
Confidence 789999999999999999999999854
No 8
>KOG0485 consensus Transcription factor NKX-5.1/HMX1, contains HOX domain [Transcription]
Probab=98.84 E-value=4.7e-10 Score=88.95 Aligned_cols=26 Identities=42% Similarity=0.716 Sum_probs=24.8
Q ss_pred CcchhCCCCcccceecccchhhHHHH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIH 26 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~ 26 (134)
||.+|.|+|.||||||||||.|||++
T Consensus 137 LA~sLqLTETQVKIWFQNRRnKwKRq 162 (268)
T KOG0485|consen 137 LAASLQLTETQVKIWFQNRRNKWKRQ 162 (268)
T ss_pred HHHhhhhhhhhhhhhhhhhhHHHHHH
Confidence 68999999999999999999999986
No 9
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=98.82 E-value=7.2e-10 Score=91.05 Aligned_cols=45 Identities=31% Similarity=0.448 Sum_probs=42.1
Q ss_pred CcchhCCCCcccceecccchhhHHHHhhHHHHHHHHHHHHHHHHH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTIELDYKTIQQELDNVLAE 45 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~~~~~~~lk~~~~~l~~e 45 (134)
|+.++||.+|.|||||||||+|.|+.++..-...|.+.+..++..
T Consensus 200 LsseTGLDMRVVQVWFQNRRAKEKRLKKDAGR~RWgqyfrsmK~s 244 (383)
T KOG4577|consen 200 LSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWGQYFRSMKRS 244 (383)
T ss_pred hhhccCcceeehhhhhhhhhHHHHhhhhhcchhHHHHHHHHhhcc
Confidence 577899999999999999999999999999999999999998765
No 10
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only]
Probab=98.65 E-value=8.2e-09 Score=81.40 Aligned_cols=26 Identities=38% Similarity=0.705 Sum_probs=23.4
Q ss_pred cchhCCCCcccceecccchhhHHHHh
Q 047986 2 ARRLGLPPRQIAVWYQNRRAREKIHT 27 (134)
Q Consensus 2 A~~l~L~e~qVkiWFQNRR~k~K~~~ 27 (134)
+..|.|+++||||||||||+|.|+.+
T Consensus 178 SsSL~LTeTqVKIWFQNRRAKaKRlQ 203 (246)
T KOG0492|consen 178 SSSLELTETQVKIWFQNRRAKAKRLQ 203 (246)
T ss_pred hhhhhhhhhheehhhhhhhHHHHHHH
Confidence 55789999999999999999999864
No 11
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription]
Probab=98.56 E-value=1.7e-08 Score=83.65 Aligned_cols=29 Identities=45% Similarity=0.827 Sum_probs=26.6
Q ss_pred CcchhCCCCcccceecccchhhHHHHhhH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTIE 29 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~~ 29 (134)
||..|||+|..|||||||||+|.|++..-
T Consensus 214 LAAaLNLPEtTIKVWFQNRRMKDKRQRla 242 (408)
T KOG0844|consen 214 LAAALNLPETTIKVWFQNRRMKDKRQRLA 242 (408)
T ss_pred HHHhhCCCcceeehhhhhchhhhhhhhhh
Confidence 68899999999999999999999997654
No 12
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only]
Probab=98.54 E-value=1.4e-08 Score=82.41 Aligned_cols=35 Identities=40% Similarity=0.598 Sum_probs=29.1
Q ss_pred CcchhCCCCcccceecccchhhHHHHhhHHHHHHH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTIELDYKTI 35 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~~~~~~~l 35 (134)
||.++.|+|.+|+|||||||+|||+..++-.....
T Consensus 174 la~ktelpEDRIqVWfQNRRAKWRk~Ek~wg~sT~ 208 (332)
T KOG0494|consen 174 LADKTELPEDRIQVWFQNRRAKWRKTEKRWGGSTI 208 (332)
T ss_pred HhhhccCchhhhhHHhhhhhHHhhhhhhhcCcchh
Confidence 57889999999999999999999998766544443
No 13
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription]
Probab=98.48 E-value=2e-08 Score=71.72 Aligned_cols=27 Identities=33% Similarity=0.710 Sum_probs=24.5
Q ss_pred CcchhCCCCcccceecccchhhHHHHh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHT 27 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~ 27 (134)
||.++.|++.+|+|||||||+|.+++.
T Consensus 50 iA~kidLTEARVQVWFQNRRAKfRKQE 76 (125)
T KOG0484|consen 50 IALKIDLTEARVQVWFQNRRAKFRKQE 76 (125)
T ss_pred HHHhhhhhHHHHHHHHHhhHHHHHHHH
Confidence 578899999999999999999998864
No 14
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=98.44 E-value=3.3e-08 Score=78.76 Aligned_cols=27 Identities=37% Similarity=0.726 Sum_probs=24.2
Q ss_pred CcchhCCCCcccceecccchhhHHHHh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHT 27 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~ 27 (134)
||..+|+++.||+|||||||+|||++.
T Consensus 200 lA~~lgmteSqvkVWFQNRRTKWRKkh 226 (288)
T KOG0847|consen 200 LAQELNMTESQVKVWFQNRRTKWRKKH 226 (288)
T ss_pred hhccccccHHHHHHHHhcchhhhhhhh
Confidence 467889999999999999999999853
No 15
>KOG2251 consensus Homeobox transcription factor [Transcription]
Probab=98.37 E-value=7.8e-08 Score=76.21 Aligned_cols=29 Identities=38% Similarity=0.775 Sum_probs=26.2
Q ss_pred CcchhCCCCcccceecccchhhHHHHhhH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTIE 29 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~~ 29 (134)
||.+|+|++.+|+|||.|||+|+|+++..
T Consensus 70 lAlklnLpeSrVqVWFKNRRAK~r~qq~q 98 (228)
T KOG2251|consen 70 LALKLNLPESRVQVWFKNRRAKCRRQQQQ 98 (228)
T ss_pred HHHHhCCchhhhhhhhccccchhhHhhhh
Confidence 68899999999999999999999987643
No 16
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=98.33 E-value=7.5e-08 Score=78.36 Aligned_cols=30 Identities=47% Similarity=0.703 Sum_probs=26.5
Q ss_pred CcchhCCCCcccceecccchhhHHHHhhHH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTIEL 30 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~~~ 30 (134)
||.+|+|.|.||||||||+|+|.|+-..-.
T Consensus 279 La~ELgLNEsQIKIWFQNKRAKiKKsTgsk 308 (342)
T KOG0493|consen 279 LAQELGLNESQIKIWFQNKRAKIKKSTGSK 308 (342)
T ss_pred HHHHhCcCHHHhhHHhhhhhhhhhhccCCC
Confidence 688999999999999999999999865443
No 17
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only]
Probab=98.26 E-value=9e-08 Score=73.24 Aligned_cols=27 Identities=41% Similarity=0.735 Sum_probs=24.8
Q ss_pred CcchhCCCCcccceecccchhhHHHHh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHT 27 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~ 27 (134)
||..|+|.++|||-||||||+|.|+.+
T Consensus 133 Lan~L~LS~~QVKTWFQNrRMK~Kk~~ 159 (194)
T KOG0491|consen 133 LANALSLSETQVKTWFQNRRMKHKKQQ 159 (194)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 577899999999999999999999865
No 18
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=98.19 E-value=1.2e-07 Score=59.02 Aligned_cols=25 Identities=56% Similarity=0.981 Sum_probs=23.3
Q ss_pred CcchhCCCCcccceecccchhhHHH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKI 25 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~ 25 (134)
||..+||++.+|++||+|||.++|+
T Consensus 33 la~~l~l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 33 LAKELGLTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp HHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccCHHHhHHHhCc
Confidence 5889999999999999999999985
No 19
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=98.11 E-value=5.9e-07 Score=67.99 Aligned_cols=29 Identities=38% Similarity=0.836 Sum_probs=25.6
Q ss_pred CcchhCCCCcccceecccchhhHHHHhhH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTIE 29 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~~ 29 (134)
|+..+||+++-|+|||||||++.|+....
T Consensus 84 L~~~lnm~~ksVqIWFQNkR~~~k~~~~~ 112 (156)
T COG5576 84 LSLLLNMPPKSVQIWFQNKRAKEKKKRSG 112 (156)
T ss_pred HHHhcCCChhhhhhhhchHHHHHHHhccc
Confidence 56789999999999999999999987644
No 20
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=97.87 E-value=1.2e-06 Score=54.26 Aligned_cols=26 Identities=54% Similarity=0.961 Sum_probs=23.5
Q ss_pred CcchhCCCCcccceecccchhhHHHH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIH 26 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~ 26 (134)
||..+||++.+|+.||+|||.+.++.
T Consensus 33 la~~~~l~~~qV~~WF~nrR~~~~~~ 58 (59)
T cd00086 33 LAKELGLTERQVKIWFQNRRAKLKRS 58 (59)
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHhcc
Confidence 58899999999999999999998763
No 21
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=97.81 E-value=1.5e-06 Score=53.55 Aligned_cols=24 Identities=63% Similarity=1.050 Sum_probs=21.7
Q ss_pred CcchhCCCCcccceecccchhhHH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREK 24 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K 24 (134)
||..+||+..+|+.||+|||.+.+
T Consensus 33 la~~~~l~~~qV~~WF~nrR~~~~ 56 (56)
T smart00389 33 LAAKLGLSERQVKVWFQNRRAKWK 56 (56)
T ss_pred HHHHHCcCHHHHHHhHHHHhhccC
Confidence 578999999999999999998764
No 22
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=97.68 E-value=1e-05 Score=62.39 Aligned_cols=27 Identities=37% Similarity=0.591 Sum_probs=24.6
Q ss_pred CcchhCCCCcccceecccchhhHHHHh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHT 27 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~ 27 (134)
||..+++++.+|+|||||||++|+++.
T Consensus 93 la~~~~~~e~rVqvwFqnrrak~r~~~ 119 (235)
T KOG0490|consen 93 LALLLTGDEFRVQVWFQNRRAKDRKEE 119 (235)
T ss_pred HhhcCCCCeeeeehhhhhhcHhhhhhh
Confidence 577899999999999999999999865
No 23
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=97.40 E-value=0.00079 Score=41.04 Aligned_cols=41 Identities=27% Similarity=0.451 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 27 TIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 27 ~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
+.+.+|..|+..++.|..++++|.+|+..|++++..+...+
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57889999999999999999999999999999998887655
No 24
>smart00340 HALZ homeobox associated leucin zipper.
Probab=97.39 E-value=0.00043 Score=41.70 Aligned_cols=33 Identities=27% Similarity=0.474 Sum_probs=30.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 26 HTIELDYKTIQQELDNVLAENRKLEQEVGMLKH 58 (134)
Q Consensus 26 ~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~ 58 (134)
++.+.+++.||+.++.|.+||++|++|+++|+.
T Consensus 1 KQTEvdCe~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 1 KQTEVDCELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367889999999999999999999999999986
No 25
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=97.38 E-value=3.6e-05 Score=49.39 Aligned_cols=20 Identities=20% Similarity=0.682 Sum_probs=18.0
Q ss_pred CcchhCCCCcccceecccch
Q 047986 1 LARRLGLPPRQIAVWYQNRR 20 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR 20 (134)
||..+||++++|+|||||-+
T Consensus 38 la~~lgl~~~vvKVWfqN~k 57 (58)
T TIGR01565 38 FCEEIGVTRKVFKVWMHNNK 57 (58)
T ss_pred HHHHhCCCHHHeeeecccCC
Confidence 57899999999999999964
No 26
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription]
Probab=97.16 E-value=0.00012 Score=61.01 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=22.8
Q ss_pred cchhCCCCcccceecccchhhHHHHh
Q 047986 2 ARRLGLPPRQIAVWYQNRRAREKIHT 27 (134)
Q Consensus 2 A~~l~L~e~qVkiWFQNRR~k~K~~~ 27 (134)
|.-.+|+|.+|+|||.|||+||+++.
T Consensus 146 avwtNlTE~rvrvwfknrrakwrkrE 171 (351)
T KOG0486|consen 146 AVWTNLTEARVRVWFKNRRAKWRKRE 171 (351)
T ss_pred Hhhccccchhhhhhcccchhhhhhhh
Confidence 44568999999999999999999864
No 27
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=96.30 E-value=0.00089 Score=54.99 Aligned_cols=25 Identities=40% Similarity=0.808 Sum_probs=23.1
Q ss_pred CcchhCCCCcccceecccchhhHHH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKI 25 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~ 25 (134)
||+++||+..||-.||.|||-|.|-
T Consensus 209 LA~aTgLt~tQVsNWFKNRRQRDRa 233 (304)
T KOG0775|consen 209 LAEATGLTITQVSNWFKNRRQRDRA 233 (304)
T ss_pred HHHHhCCchhhhhhhhhhhhhhhhh
Confidence 6889999999999999999999873
No 28
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription]
Probab=96.26 E-value=0.0009 Score=56.48 Aligned_cols=27 Identities=44% Similarity=0.864 Sum_probs=25.0
Q ss_pred CcchhCCCCcccceecccchhhHHHHh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHT 27 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~ 27 (134)
||.+.++++.+|++||+|||++|+++.
T Consensus 209 La~~i~l~e~riqvwf~nrra~~rr~~ 235 (354)
T KOG0849|consen 209 LAKETGLPEPRVQVWFQNRRAKWRRQH 235 (354)
T ss_pred HhhhccCCchHHHHHHhhhhhhhhhcc
Confidence 688999999999999999999999865
No 29
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription]
Probab=95.73 E-value=0.0026 Score=54.51 Aligned_cols=27 Identities=41% Similarity=0.660 Sum_probs=24.7
Q ss_pred CcchhCCCCcccceecccchhhHHHHh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHT 27 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~ 27 (134)
||.+|+|....|+|||=|||-|.|+-.
T Consensus 327 iA~~L~leKEVVRVWFCNRRQkeKR~~ 353 (398)
T KOG3802|consen 327 IAESLQLEKEVVRVWFCNRRQKEKRIT 353 (398)
T ss_pred HHHHhccccceEEEEeeccccccccCC
Confidence 588999999999999999999999854
No 30
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.98 E-value=0.078 Score=32.20 Aligned_cols=34 Identities=35% Similarity=0.581 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 28 IELDYKTIQQELDNVLAENRKLEQEVGMLKHELK 61 (134)
Q Consensus 28 ~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~ 61 (134)
....|..|+.+++.|..||..|+.++..|+..+.
T Consensus 10 LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 10 LKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4567889999999999999999999999987664
No 31
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=94.70 E-value=0.0025 Score=37.75 Aligned_cols=22 Identities=45% Similarity=0.865 Sum_probs=18.6
Q ss_pred CcchhCCCCcccceecccchhh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAR 22 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k 22 (134)
||.+.||+..||..||-|.|.|
T Consensus 19 L~~~tgls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 19 LAKQTGLSRKQISNWFINARRR 40 (40)
T ss_dssp HHHHHTS-HHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHhHcc
Confidence 5788999999999999998865
No 32
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=93.62 E-value=0.25 Score=34.90 Aligned_cols=53 Identities=19% Similarity=0.220 Sum_probs=37.3
Q ss_pred ccceecccchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 11 QIAVWYQNRRAREKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 11 qVkiWFQNRR~k~K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
+...||+...- .+....+.+...++++++.+..+|..|+.++..|+.....+.
T Consensus 16 ~y~l~~g~~G~-~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiE 68 (105)
T PRK00888 16 QYSLWFGKNGI-LDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIE 68 (105)
T ss_pred HHHHhccCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHH
Confidence 34578865432 334455677888888889999999999999998887444443
No 33
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=93.39 E-value=0.53 Score=38.38 Aligned_cols=46 Identities=26% Similarity=0.431 Sum_probs=34.6
Q ss_pred hhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 20 RAREKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQMLL 68 (134)
Q Consensus 20 R~k~K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l~ 68 (134)
|.|.+++.+. ..++.....|..||..|+.+|.+|+.++.++...+.
T Consensus 208 kSR~~~k~~~---~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~ 253 (269)
T KOG3119|consen 208 KSRDKRKQKE---DEMAHRVAELEKENEALRTQVEQLKKELATLRRLFL 253 (269)
T ss_pred HhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443 445566677889999999999999999999987775
No 34
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=92.87 E-value=0.034 Score=42.71 Aligned_cols=27 Identities=52% Similarity=0.876 Sum_probs=23.9
Q ss_pred CcchhCCCCcccceecccchhhHHHHh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHT 27 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~ 27 (134)
|+..+|++++.|++||||+|.+.++..
T Consensus 186 l~~~~~~~~~~~q~~~~~~~~~~~~~~ 212 (235)
T KOG0490|consen 186 LAEETGLSERVIQVWFQNRRAKLRKHK 212 (235)
T ss_pred HHHhcCCChhhhhhhcccHHHHHHhhc
Confidence 466789999999999999999998864
No 35
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=92.04 E-value=1.9 Score=27.32 Aligned_cols=42 Identities=17% Similarity=0.313 Sum_probs=31.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 25 IHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQM 66 (134)
Q Consensus 25 ~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~ 66 (134)
+..+...+..|....+.|..+|..|..++..|+.++..+...
T Consensus 21 R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 21 RQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455667778888888888888888888888888776654
No 36
>smart00338 BRLZ basic region leucin zipper.
Probab=91.88 E-value=1.6 Score=27.66 Aligned_cols=42 Identities=24% Similarity=0.456 Sum_probs=32.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 26 HTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 26 ~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
..+......|..+...|..+|..|..++..|..++..+...+
T Consensus 22 ~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 22 ERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556777888888888899999988888888888776554
No 37
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=91.32 E-value=0.96 Score=32.19 Aligned_cols=41 Identities=22% Similarity=0.400 Sum_probs=33.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 25 IHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQ 65 (134)
Q Consensus 25 ~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~ 65 (134)
......++..+|.....+.+||.+|+.|+..|++.+.+..+
T Consensus 17 l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 17 LGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556678888999999999999999999999988877654
No 38
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=91.21 E-value=1.7 Score=28.77 Aligned_cols=36 Identities=22% Similarity=0.220 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 29 ELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 29 ~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
-..+..|+.+++.|+++|..|..++..|++++.+++
T Consensus 17 veti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 17 VETIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344555566666666665555555555555555444
No 39
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=89.66 E-value=1.5 Score=36.40 Aligned_cols=44 Identities=18% Similarity=0.339 Sum_probs=35.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 25 IHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQMLL 68 (134)
Q Consensus 25 ~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l~ 68 (134)
+++++.+.+.+--+++.|...|++|+.++.+|-.|+.++++.+.
T Consensus 243 RqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 243 RQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777778888888889999999999988888888886553
No 40
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=89.21 E-value=1.6 Score=31.31 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=32.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 26 HTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 26 ~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
.....+...||.....+.+||..|+.|+..|++.+.++.
T Consensus 18 ~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 18 GVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445567888899999999999999999999999888753
No 41
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=89.09 E-value=2.9 Score=27.68 Aligned_cols=44 Identities=23% Similarity=0.363 Sum_probs=34.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 24 KIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 24 K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
.....+.++..|+.++..+..++..|+.++.+|+++....+..+
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl 62 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERL 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888999999999999999999999998877655444
No 42
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=88.40 E-value=3.4 Score=26.09 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=24.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 25 IHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHEL 60 (134)
Q Consensus 25 ~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~ 60 (134)
....+..+..|..+++.|..++..|..++..|+.++
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555666677777777777777777777777654
No 43
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=88.07 E-value=1.4 Score=36.56 Aligned_cols=26 Identities=31% Similarity=0.617 Sum_probs=23.7
Q ss_pred CcchhCCCCcccceecccchhhHHHH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIH 26 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~ 26 (134)
||++-|++-.||-.||.|+|-+.|+-
T Consensus 224 LAkqCnItvsQvsnwfgnkrIrykK~ 249 (334)
T KOG0774|consen 224 LAKQCNITVSQVSNWFGNKRIRYKKN 249 (334)
T ss_pred HHHHcCceehhhccccccceeehhhh
Confidence 67888999999999999999999874
No 44
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=86.04 E-value=5 Score=24.57 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 29 ELDYKTIQQELDNVLAENRKLEQEVGMLKH 58 (134)
Q Consensus 29 ~~~~~~lk~~~~~l~~en~~l~~e~~~L~~ 58 (134)
......+......|..+|..|+.++..|+.
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555666666666777777666666654
No 45
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=86.01 E-value=5.8 Score=26.89 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=31.6
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 22 REKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQMLL 68 (134)
Q Consensus 22 k~K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l~ 68 (134)
+..+.....+...|+..++.|...-...+.++..|+.|++.++..+.
T Consensus 15 ~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~ 61 (80)
T PF10224_consen 15 KEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIG 61 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555566667777777777777777777777777777776664
No 46
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=84.93 E-value=3.2 Score=29.21 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 30 LDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQ 65 (134)
Q Consensus 30 ~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~ 65 (134)
..+..++++.+.++.++..++.++..|+.++..++.
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 466777778888888888888888888888877764
No 47
>smart00338 BRLZ basic region leucin zipper.
Probab=84.70 E-value=5.7 Score=25.07 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 27 TIELDYKTIQQELDNVLAENRKLEQEVGMLKHEL 60 (134)
Q Consensus 27 ~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~ 60 (134)
..+.+...|..++..|..+...|+.++..|+.++
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555555555555555555555555543
No 48
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=84.09 E-value=3.7 Score=32.93 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 047986 30 LDYKTIQQELDNVLAENRKLEQEVG---MLKHELKKSQQMLL 68 (134)
Q Consensus 30 ~~~~~lk~~~~~l~~en~~l~~e~~---~L~~e~~~~~~~l~ 68 (134)
..+..++++++.|++|+..|+.++. .+++|+.+++..+.
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566677777778888877777666 56777777777664
No 49
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=83.71 E-value=11 Score=27.93 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 31 DYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQ 65 (134)
Q Consensus 31 ~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~ 65 (134)
+...|.++.+.|.+|+.+++.|..-++..++.+..
T Consensus 82 ~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~ 116 (135)
T KOG4196|consen 82 EKAELQQQVEKLKEENSRLRRELDAYKSKYEALQN 116 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445556666666666666666666666655543
No 50
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=83.27 E-value=5.6 Score=32.55 Aligned_cols=37 Identities=30% Similarity=0.399 Sum_probs=15.0
Q ss_pred ccchhhHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 047986 17 QNRRAREKIHTIELDY--KTIQQELDNVLAENRKLEQEV 53 (134)
Q Consensus 17 QNRR~k~K~~~~~~~~--~~lk~~~~~l~~en~~l~~e~ 53 (134)
|+-|.|.|-+..+.++ ..|..+++.|+.||+.|+..+
T Consensus 82 QtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n 120 (292)
T KOG4005|consen 82 QTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAIN 120 (292)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555544433322 223334444444444333333
No 51
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=81.81 E-value=3.7 Score=37.09 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 27 TIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKS 63 (134)
Q Consensus 27 ~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~ 63 (134)
++.+....|+..+.+|..||+.|+.|++.|+..+..+
T Consensus 299 KKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l 335 (655)
T KOG4343|consen 299 KKKEYMLGLEARLQALLSENEQLKKENATLKRQLDEL 335 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3444555677888888888888888888888877654
No 52
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=81.42 E-value=1.4 Score=31.31 Aligned_cols=17 Identities=29% Similarity=0.710 Sum_probs=14.4
Q ss_pred CcchhCCCCcccceecc
Q 047986 1 LARRLGLPPRQIAVWYQ 17 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQ 17 (134)
+|+++|+++.+|--|.+
T Consensus 35 vA~e~gIs~~tl~~W~r 51 (121)
T PRK09413 35 VARQHGVAASQLFLWRK 51 (121)
T ss_pred HHHHHCcCHHHHHHHHH
Confidence 47889999999999964
No 53
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=80.86 E-value=14 Score=25.14 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=15.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 25 IHTIELDYKTIQQELDNVLAENRKLEQEVG 54 (134)
Q Consensus 25 ~~~~~~~~~~lk~~~~~l~~en~~l~~e~~ 54 (134)
.++--..+..|+-+.+.|+++|..|..++.
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L~~e~~ 42 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455566666666666655555433
No 54
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=80.83 E-value=3.3 Score=35.34 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 31 DYKTIQQELDNVLAENRKLEQEVGMLKHELKK 62 (134)
Q Consensus 31 ~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~ 62 (134)
+...|+.|++.|+.||..|+.++++|.++-.+
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~ 64 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERLENEMLR 64 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55667777777777777777777777655543
No 55
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]
Probab=80.76 E-value=0.83 Score=37.82 Aligned_cols=29 Identities=38% Similarity=0.585 Sum_probs=25.0
Q ss_pred CcchhCCCCcccceecccchhhHHHHhhH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTIE 29 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~~ 29 (134)
||+++||+..||..||-|.|-|..+....
T Consensus 275 La~~TGLs~~Qv~NWFINaR~R~w~p~~~ 303 (342)
T KOG0773|consen 275 LAKQTGLSRPQVSNWFINARVRLWKPMIE 303 (342)
T ss_pred cchhcCCCcccCCchhhhcccccCCchHH
Confidence 68899999999999999999888775533
No 56
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=79.32 E-value=8.5 Score=34.10 Aligned_cols=21 Identities=10% Similarity=0.340 Sum_probs=9.0
Q ss_pred hHHHHhhHHHHHHHHHHHHHH
Q 047986 22 REKIHTIELDYKTIQQELDNV 42 (134)
Q Consensus 22 k~K~~~~~~~~~~lk~~~~~l 42 (134)
+.+......++..|+.+++.|
T Consensus 72 r~~~~~l~~~N~~l~~eN~~L 92 (472)
T TIGR03752 72 RKRLAKLISENEALKAENERL 92 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444
No 57
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=79.22 E-value=4.3 Score=31.57 Aligned_cols=47 Identities=17% Similarity=0.348 Sum_probs=24.7
Q ss_pred eecccchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 14 VWYQNRRAREKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 14 iWFQNRR~k~K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
+|.+-|..+.|..+.+.+...++...+.| ..++++++..+..++..+
T Consensus 90 y~R~~~~e~~kee~~~~e~~elr~~~~~l-------~~~i~~~~~~~~~L~~~l 136 (181)
T KOG3335|consen 90 YWRQARKERKKEEKRKQEIMELRLKVEKL-------ENAIAELTKFFSQLHSKL 136 (181)
T ss_pred hHHhhhcchhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 56666655655555555555555544444 445555555555554333
No 58
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=79.07 E-value=7.4 Score=31.86 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 27 TIELDYKTIQQELDNVLAENRKLEQEVGMLKHEL 60 (134)
Q Consensus 27 ~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~ 60 (134)
++...+..+..+...|.+||+.|+.|++.|++.+
T Consensus 87 rKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n 120 (292)
T KOG4005|consen 87 RKKARMEEMEYEIKDLTEENEILQNENDSLRAIN 120 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555555443
No 59
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=78.71 E-value=12 Score=24.39 Aligned_cols=43 Identities=21% Similarity=0.360 Sum_probs=31.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 24 KIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 24 K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
.......+...++++.+.+..++.+|+.|...|.. ..++....
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~-~~rIe~~A 67 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR-HERIEKIA 67 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHH
Confidence 34466677788888888888888888888888875 55555444
No 60
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=78.70 E-value=10 Score=24.14 Aligned_cols=37 Identities=22% Similarity=0.410 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 27 TIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKS 63 (134)
Q Consensus 27 ~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~ 63 (134)
....+...++.+++.+..+++.|+.++..|+.....+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~i 57 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYI 57 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 4556677777888888888888888887773334433
No 61
>PF15058 Speriolin_N: Speriolin N terminus
Probab=77.95 E-value=6.7 Score=30.94 Aligned_cols=36 Identities=17% Similarity=0.481 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 31 DYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 31 ~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
.|+-++..++.|+.||.+|+++|.-+++ ++.++..+
T Consensus 6 ~yeGlrhqierLv~ENeeLKKlVrLirE-N~eLksaL 41 (200)
T PF15058_consen 6 NYEGLRHQIERLVRENEELKKLVRLIRE-NHELKSAL 41 (200)
T ss_pred chHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHH
Confidence 4667788889999999999998887774 55555443
No 62
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=77.89 E-value=5.8 Score=25.48 Aligned_cols=30 Identities=20% Similarity=0.427 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 29 ELDYKTIQQELDNVLAENRKLEQEVGMLKH 58 (134)
Q Consensus 29 ~~~~~~lk~~~~~l~~en~~l~~e~~~L~~ 58 (134)
+.+...||..+..|.+.|..|+.|+..|+.
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666777777777777777666666664
No 63
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=76.62 E-value=0.81 Score=36.82 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 23 EKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKS 63 (134)
Q Consensus 23 ~K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~ 63 (134)
.+.......+..|++..+.|++||++|++|+.+|+++..++
T Consensus 122 T~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 122 TRIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp -----------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455677788888999999999999999999998887
No 64
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=76.39 E-value=11 Score=24.00 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 28 IELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKS 63 (134)
Q Consensus 28 ~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~ 63 (134)
....+..++++...+..+...++.++..|+.++..+
T Consensus 15 ~~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 15 GYSRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667788888888888888888888888888877
No 65
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=75.48 E-value=8.4 Score=34.13 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=17.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 26 HTIELDYKTIQQELDNVLAENRKLEQ 51 (134)
Q Consensus 26 ~~~~~~~~~lk~~~~~l~~en~~l~~ 51 (134)
+..+.+...+..+++.|++||++|++
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777777766544
No 66
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=75.32 E-value=8.1 Score=26.03 Aligned_cols=27 Identities=26% Similarity=0.500 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 40 DNVLAENRKLEQEVGMLKHELKKSQQM 66 (134)
Q Consensus 40 ~~l~~en~~l~~e~~~L~~e~~~~~~~ 66 (134)
..+.+||.+|+.+.+.|.+|+++....
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567888888888888888888877655
No 67
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=72.93 E-value=15 Score=20.79 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 40 DNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 40 ~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
..|..|.+.|+...++|+..+++++
T Consensus 4 qkL~sekeqLrrr~eqLK~kLeqlr 28 (32)
T PF02344_consen 4 QKLISEKEQLRRRREQLKHKLEQLR 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466777778888888887777665
No 68
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=72.89 E-value=27 Score=25.25 Aligned_cols=30 Identities=20% Similarity=0.387 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 29 ELDYKTIQQELDNVLAENRKLEQEVGMLKH 58 (134)
Q Consensus 29 ~~~~~~lk~~~~~l~~en~~l~~e~~~L~~ 58 (134)
+++.+.||..+..|.+.|.+|+.|+.-||.
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555666666666666666666666654
No 69
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=71.88 E-value=14 Score=27.48 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 40 DNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 40 ~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
+.|..++..|..|+..|++|+..+...+
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~ 104 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRREL 104 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777777666655433
No 70
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=71.39 E-value=15 Score=30.14 Aligned_cols=36 Identities=22% Similarity=0.174 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 047986 33 KTIQQELDNVLAENRKLEQE----VGMLKHELKKSQQMLL 68 (134)
Q Consensus 33 ~~lk~~~~~l~~en~~l~~e----~~~L~~e~~~~~~~l~ 68 (134)
..+++|++.|++|+..|+.+ ...++.|+.+++..|.
T Consensus 69 ~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 69 NNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555555554443222 2236667777776664
No 71
>PRK10884 SH3 domain-containing protein; Provisional
Probab=71.31 E-value=22 Score=27.94 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047986 43 LAENRKLEQEVGMLKHE 59 (134)
Q Consensus 43 ~~en~~l~~e~~~L~~e 59 (134)
.++|++|+.++..++.+
T Consensus 138 ~~~n~~L~~~l~~~~~~ 154 (206)
T PRK10884 138 KEENQKLKNQLIVAQKK 154 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 72
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=70.84 E-value=33 Score=24.78 Aligned_cols=44 Identities=25% Similarity=0.370 Sum_probs=29.9
Q ss_pred hhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 20 RAREKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKS 63 (134)
Q Consensus 20 R~k~K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~ 63 (134)
|.....+..+.+...++.++..+..+++.+..|+..|..++..+
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888888888888777776666666665555444
No 73
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=70.71 E-value=5.6 Score=30.51 Aligned_cols=22 Identities=41% Similarity=0.549 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047986 44 AENRKLEQEVGMLKHELKKSQQ 65 (134)
Q Consensus 44 ~en~~l~~e~~~L~~e~~~~~~ 65 (134)
.|++.|+.++++|++|+..+++
T Consensus 24 dEKE~L~~~~QRLkDE~RDLKq 45 (166)
T PF04880_consen 24 DEKENLREEVQRLKDELRDLKQ 45 (166)
T ss_dssp HHHHHHHHCH------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554443
No 74
>PF14645 Chibby: Chibby family
Probab=70.10 E-value=22 Score=25.49 Aligned_cols=47 Identities=13% Similarity=0.146 Sum_probs=28.7
Q ss_pred ecccchhh---HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 15 WYQNRRAR---EKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELK 61 (134)
Q Consensus 15 WFQNRR~k---~K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~ 61 (134)
+|++.+-- ........+...++.++..|.+||.-|+.+++-|-+-+-
T Consensus 53 ~F~dG~W~~e~~~~~~~~~~~~~l~~~n~~L~EENN~Lklk~elLlDMLt 102 (116)
T PF14645_consen 53 VFEDGQWTSESGSGTADGEENQRLRKENQQLEEENNLLKLKIELLLDMLT 102 (116)
T ss_pred EEECCEEeccCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554433 122334456677777777787887777777766665544
No 75
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=69.30 E-value=20 Score=29.02 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=29.3
Q ss_pred hhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 20 RAREKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 20 R~k~K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
|-|.|....+.+....+.....|+.|...|+.++.+|=++...++
T Consensus 90 RFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 90 RFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555666666666667777777777777777766666554
No 76
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=68.95 E-value=1.8 Score=42.48 Aligned_cols=27 Identities=44% Similarity=0.848 Sum_probs=23.6
Q ss_pred cchhCCCCcccceecccchhhHHHHhh
Q 047986 2 ARRLGLPPRQIAVWYQNRRAREKIHTI 28 (134)
Q Consensus 2 A~~l~L~e~qVkiWFQNRR~k~K~~~~ 28 (134)
...++|+.+.|++||||-|.+.|+...
T Consensus 937 ~~~~~~~~~~i~vw~qna~~~s~k~~~ 963 (1406)
T KOG1146|consen 937 EEPIGLPKRVIQVWFQNARAKSKKAKL 963 (1406)
T ss_pred cccccCCcchhHHhhhhhhhhhhhhhh
Confidence 456789999999999999999998765
No 77
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=68.67 E-value=30 Score=22.57 Aligned_cols=36 Identities=11% Similarity=0.096 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 29 ELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 29 ~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
-..+..++.++..|..+...+..|...|.+.+..+.
T Consensus 13 i~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar 48 (65)
T TIGR02449 13 LEYLERLKSENRLLRAQEKTWREERAQLLEKNEQAR 48 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555556665555443
No 78
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=68.21 E-value=28 Score=26.65 Aligned_cols=27 Identities=19% Similarity=0.427 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 33 KTIQQELDNVLAENRKLEQEVGMLKHE 59 (134)
Q Consensus 33 ~~lk~~~~~l~~en~~l~~e~~~L~~e 59 (134)
..++.++..|..++..|++++..|..+
T Consensus 107 ~~l~~e~~~l~~~~e~Le~e~~~L~~~ 133 (161)
T TIGR02894 107 ERLKNQNESLQKRNEELEKELEKLRQR 133 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444333
No 79
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=68.18 E-value=8.6 Score=32.92 Aligned_cols=29 Identities=17% Similarity=0.383 Sum_probs=19.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 26 HTIELDYKTIQQELDNVLAENRKLEQEVG 54 (134)
Q Consensus 26 ~~~~~~~~~lk~~~~~l~~en~~l~~e~~ 54 (134)
...+.|+.+||+|+++|+.|-.+|+.++.
T Consensus 35 ~aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 35 FALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566777777777777777777655444
No 80
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=68.12 E-value=16 Score=26.33 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 27 TIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKK 62 (134)
Q Consensus 27 ~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~ 62 (134)
....+...+|+....+.+||..|+.|+..|++.+..
T Consensus 19 ~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 19 VLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 445677788888999999999999999999987765
No 81
>PRK10884 SH3 domain-containing protein; Provisional
Probab=66.58 E-value=36 Score=26.73 Aligned_cols=27 Identities=11% Similarity=0.153 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 35 IQQELDNVLAENRKLEQEVGMLKHELK 61 (134)
Q Consensus 35 lk~~~~~l~~en~~l~~e~~~L~~e~~ 61 (134)
|+.+++.|.++...++.++..|..++.
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333
No 82
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=65.67 E-value=38 Score=22.74 Aligned_cols=40 Identities=18% Similarity=0.402 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 27 TIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 27 ~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
....+...++++.+.+..|+.+|+.|...|.. +.++....
T Consensus 39 ~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~-~~rIe~iA 78 (97)
T PF04999_consen 39 QLFYELQQLEKEIDQLQEENERLRLEIATLSS-PSRIERIA 78 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-HHHHHHHH
Confidence 44455778888888888888888888888885 55655443
No 83
>PRK14127 cell division protein GpsB; Provisional
Probab=64.75 E-value=29 Score=24.79 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 35 IQQELDNVLAENRKLEQEVGMLKHELKKSQQMLL 68 (134)
Q Consensus 35 lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l~ 68 (134)
+-..++.+..|+.+|+.++..|+.++...+..+.
T Consensus 35 V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 35 VIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566777778888888888888888877776664
No 84
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.35 E-value=40 Score=22.55 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 31 DYKTIQQELDNVLAENRKLEQEVG 54 (134)
Q Consensus 31 ~~~~lk~~~~~l~~en~~l~~e~~ 54 (134)
-+..|+-+.+.|+++|..|..++.
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q 42 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHH
Confidence 344455555556555554444443
No 85
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=64.03 E-value=34 Score=21.62 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 28 IELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKS 63 (134)
Q Consensus 28 ~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~ 63 (134)
.+.+...+....+.++.|++.++.+++.+.+-.+++
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666677777777777777777777665544
No 86
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=63.47 E-value=38 Score=26.81 Aligned_cols=38 Identities=24% Similarity=0.474 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 27 TIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 27 ~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
....++..++.+.+.+...+++++..+..+..++..+.
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~ 90 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLE 90 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666655555555555554444
No 87
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=63.33 E-value=81 Score=28.10 Aligned_cols=52 Identities=4% Similarity=0.194 Sum_probs=30.8
Q ss_pred cccchhhHHHHhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 16 YQNRRAREKIHTIELDYKTIQQELDNVL-------AENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 16 FQNRR~k~K~~~~~~~~~~lk~~~~~l~-------~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
|-.+..+.+....+.....+.++++.++ .....++.++..+.+++..++.++
T Consensus 62 FddkVnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 62 FDDKVRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444555555555554 444567777777778887777666
No 88
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=63.29 E-value=50 Score=25.30 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 30 LDYKTIQQELDNVLAENRKLEQEVGMLKHELK 61 (134)
Q Consensus 30 ~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~ 61 (134)
.+...|+.+++.|..|+..|.++...+.+++.
T Consensus 111 ~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~ 142 (161)
T TIGR02894 111 NQNESLQKRNEELEKELEKLRQRLSTIEEDYQ 142 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 89
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=63.13 E-value=48 Score=25.79 Aligned_cols=57 Identities=18% Similarity=0.375 Sum_probs=36.7
Q ss_pred ceecccchhhHHHHhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHh
Q 047986 13 AVWYQNRRAREKIHTIELDYKTIQQ----ELDNVLAENRKLEQEVGMLKHELKKSQ---QMLLA 69 (134)
Q Consensus 13 kiWFQNRR~k~K~~~~~~~~~~lk~----~~~~l~~en~~l~~e~~~L~~e~~~~~---~~l~~ 69 (134)
++|-.+.-...---.++..|..+++ +++.|++++.+|+.+...-..+|+.+. .+|+.
T Consensus 102 QlWRe~Q~lql~L~eEr~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDIERQLSS 165 (179)
T PF13942_consen 102 QLWREQQVLQLQLSEERARYQRLQQSSDSELDALRQQQQRLQYQLDTTTRKLENLTDIERQLSS 165 (179)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhc
Confidence 4566666555555566667777765 455577777777777777666666554 45543
No 90
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=61.76 E-value=39 Score=25.31 Aligned_cols=42 Identities=21% Similarity=0.300 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
Q 047986 27 TIELDYKTIQQELDNVLAEN------------RKLEQEVGMLKHELKKSQQMLL 68 (134)
Q Consensus 27 ~~~~~~~~lk~~~~~l~~en------------~~l~~e~~~L~~e~~~~~~~l~ 68 (134)
+...+...++.|...+++|. .+|+.+...+.+|++++.+...
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~ 90 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLS 90 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666665 3678888888888887776554
No 91
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=60.86 E-value=23 Score=28.26 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 047986 27 TIELDYKTIQQELDNVLAENR---KLEQEVGMLKHEL 60 (134)
Q Consensus 27 ~~~~~~~~lk~~~~~l~~en~---~l~~e~~~L~~e~ 60 (134)
....++..|++++..|..+.. .++.|+.+|++.+
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL 109 (276)
T PRK13922 73 DLREENEELKKELLELESRLQELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556666666666655554 4556666666544
No 92
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=60.60 E-value=14 Score=33.61 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 29 ELDYKTIQQELDNVLAENRKLEQEVGMLKHELK 61 (134)
Q Consensus 29 ~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~ 61 (134)
+.....+-++++.|+.||..|+.+...|..|.+
T Consensus 308 e~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~ 340 (655)
T KOG4343|consen 308 EARLQALLSENEQLKKENATLKRQLDELVSENQ 340 (655)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCc
Confidence 333344444444444444444444444444443
No 93
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=59.70 E-value=41 Score=21.80 Aligned_cols=31 Identities=26% Similarity=0.333 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 33 KTIQQELDNVLAENRKLEQEVGMLKHELKKS 63 (134)
Q Consensus 33 ~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~ 63 (134)
..+..+...+..+...++.++.+|+.|...+
T Consensus 27 ~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 27 RQLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555443
No 94
>PRK10722 hypothetical protein; Provisional
Probab=59.68 E-value=96 Score=25.34 Aligned_cols=38 Identities=16% Similarity=0.361 Sum_probs=28.0
Q ss_pred hhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 27 TIELDYKTI----QQELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 27 ~~~~~~~~l----k~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
.++..|..| -.++|.+.+++.+|+.+......+|+.+.
T Consensus 162 eEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLT 203 (247)
T PRK10722 162 EERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLT 203 (247)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666 46777788888888888888888887765
No 95
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=59.39 E-value=51 Score=23.39 Aligned_cols=38 Identities=26% Similarity=0.443 Sum_probs=26.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 25 IHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKK 62 (134)
Q Consensus 25 ~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~ 62 (134)
.+.++.....+.++++.|.--|++|.+.+..|++|+..
T Consensus 35 Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~ 72 (102)
T PF10205_consen 35 LKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEE 72 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666677777777778888888888887763
No 96
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=58.15 E-value=45 Score=21.15 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047986 42 VLAENRKLEQEVGMLKH 58 (134)
Q Consensus 42 l~~en~~l~~e~~~L~~ 58 (134)
+..|...|++++.+|+.
T Consensus 38 l~~e~~~L~~qN~eLr~ 54 (60)
T PF14775_consen 38 LIQEKESLEQQNEELRS 54 (60)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 97
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=57.64 E-value=85 Score=26.70 Aligned_cols=26 Identities=15% Similarity=0.468 Sum_probs=13.9
Q ss_pred ccceecccchhhHHHHhhHHHHHHHHHHHHHH
Q 047986 11 QIAVWYQNRRAREKIHTIELDYKTIQQELDNV 42 (134)
Q Consensus 11 qVkiWFQNRR~k~K~~~~~~~~~~lk~~~~~l 42 (134)
+|+-|...||- ...+++.|+-.+...
T Consensus 109 PVKqWLEERR~------lQgEmQ~LrDKLAia 134 (351)
T PF07058_consen 109 PVKQWLEERRF------LQGEMQQLRDKLAIA 134 (351)
T ss_pred cHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 35557665543 445566665555443
No 98
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=57.10 E-value=29 Score=28.38 Aligned_cols=37 Identities=24% Similarity=0.248 Sum_probs=25.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 047986 26 HTIELDYKTIQQELDNVLAENR----KLEQEVGMLKHELKK 62 (134)
Q Consensus 26 ~~~~~~~~~lk~~~~~l~~en~----~l~~e~~~L~~e~~~ 62 (134)
...+.|+..|+.++..+..+.. .++.|+++|++.|.-
T Consensus 69 ~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 69 NNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3466788888888776633332 388888888876654
No 99
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=57.00 E-value=48 Score=21.03 Aligned_cols=44 Identities=25% Similarity=0.394 Sum_probs=36.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 24 KIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 24 K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
|..+...+...|+.+.+.|..+-..++.++...++|-.++.+-|
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566778888999999999999999999998888887776544
No 100
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=56.97 E-value=14 Score=32.77 Aligned_cols=34 Identities=29% Similarity=0.443 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q 047986 34 TIQQELDNVLAENRKLEQEV-------GMLKHELKKSQQML 67 (134)
Q Consensus 34 ~lk~~~~~l~~en~~l~~e~-------~~L~~e~~~~~~~l 67 (134)
.|......-.+||+.|+++| ..|-++|++++.++
T Consensus 276 ~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v 316 (472)
T KOG0709|consen 276 GLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLV 316 (472)
T ss_pred HHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 33333333444555555544 45555555555444
No 101
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=56.76 E-value=48 Score=22.78 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047986 39 LDNVLAENRKLEQEVGMLKHELK 61 (134)
Q Consensus 39 ~~~l~~en~~l~~e~~~L~~e~~ 61 (134)
++.|.+||+.|+.|......+.+
T Consensus 32 ~~kL~~en~qlk~Ek~~~~~qvk 54 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAETQVK 54 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544444444
No 102
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=56.32 E-value=0.98 Score=28.76 Aligned_cols=20 Identities=20% Similarity=0.512 Sum_probs=14.0
Q ss_pred CcchhCCCCcccceecccch
Q 047986 1 LARRLGLPPRQIAVWYQNRR 20 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR 20 (134)
|..+.+|+..||+-||-.|+
T Consensus 31 L~~kS~ms~qqVr~WFa~~~ 50 (56)
T PF11569_consen 31 LCDKSRMSYQQVRDWFAERM 50 (56)
T ss_dssp HHHHTT--HHHHHHHHHHHS
T ss_pred HHHHHCCCHHHHHHHHHHhc
Confidence 35677999999999996553
No 103
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=56.11 E-value=54 Score=21.35 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 31 DYKTIQQELDNVLAENRKLEQEVGMLKHELKKS 63 (134)
Q Consensus 31 ~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~ 63 (134)
....|-..++.|..||..|+.++..+..|-..+
T Consensus 8 kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L 40 (65)
T TIGR02449 8 QVEHLLEYLERLKSENRLLRAQEKTWREERAQL 40 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555555555444443
No 104
>PRK14127 cell division protein GpsB; Provisional
Probab=55.72 E-value=35 Score=24.39 Aligned_cols=34 Identities=18% Similarity=0.338 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 35 IQQELDNVLAENRKLEQEVGMLKHELKKSQQMLL 68 (134)
Q Consensus 35 lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l~ 68 (134)
.-.-++.+..+.+.+..++..|++++..+...+.
T Consensus 28 VD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~ 61 (109)
T PRK14127 28 VDKFLDDVIKDYEAFQKEIEELQQENARLKAQVD 61 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666666666665554
No 105
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=55.62 E-value=55 Score=25.25 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=29.5
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 22 REKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKK 62 (134)
Q Consensus 22 k~K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~ 62 (134)
|||++....++...+++.+.|..+..-....+.+++..+..
T Consensus 31 rwk~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 71 (177)
T PF03234_consen 31 RWKHQARHERREERKQEIEELKYERKINEKLLKRIQKLLSA 71 (177)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888888888887776555555555544433
No 106
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=55.61 E-value=63 Score=21.94 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 047986 29 ELDYKTIQQELDNVLAEN-------RKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 29 ~~~~~~lk~~~~~l~~en-------~~l~~e~~~L~~e~~~~~ 64 (134)
..+...+|.++..|..++ ..|..++.+|+++...-+
T Consensus 24 qmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wq 66 (79)
T PRK15422 24 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 445555565555555554 447777777776665433
No 107
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=54.97 E-value=73 Score=22.51 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=33.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 26 HTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQMLL 68 (134)
Q Consensus 26 ~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l~ 68 (134)
...+.....+-.++..|+..-..|-.|+..|+-|+.+++..+.
T Consensus 11 ~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 11 DQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLE 53 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777888888888888999989999988886
No 108
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=54.88 E-value=17 Score=32.15 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 31 DYKTIQQELDNVLAENRKLEQEVGMLKHELKKS 63 (134)
Q Consensus 31 ~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~ 63 (134)
++..|+++.+.|..+|..|..+..+|+....+.
T Consensus 287 eNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q~ 319 (472)
T KOG0709|consen 287 ENQELQKKVEELELSNRSLLAQLKKLQTLVIQV 319 (472)
T ss_pred CcHHHHHHHHHHhhccHHHHHHHHHHHHHHhhc
Confidence 677788888889999999988888888766543
No 109
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=52.74 E-value=40 Score=22.34 Aligned_cols=27 Identities=41% Similarity=0.605 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 41 NVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 41 ~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
.+..+|-.|+.++..|+.+++..+..+
T Consensus 40 ~~~keNieLKve~~~L~~el~~~~~~l 66 (75)
T PF07989_consen 40 ELLKENIELKVEVESLKRELQEKKKLL 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666665555444
No 110
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=52.57 E-value=55 Score=26.61 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047986 47 RKLEQEVGMLKHELKKSQQMLL 68 (134)
Q Consensus 47 ~~l~~e~~~L~~e~~~~~~~l~ 68 (134)
..|++|++.|+.+..+++..+.
T Consensus 225 ~~leken~~lr~~v~~l~~el~ 246 (269)
T KOG3119|consen 225 AELEKENEALRTQVEQLKKELA 246 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888877776664
No 111
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=52.17 E-value=57 Score=27.97 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 30 LDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 30 ~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
.+...++.+++.+..+..+++.++.++++++.+++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 29 KELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555566666666666665544
No 112
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=51.76 E-value=46 Score=30.12 Aligned_cols=41 Identities=22% Similarity=0.436 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 27 TIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 27 ~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
..+.++..+++.+..+..+..+|+.++.+|..++..++.++
T Consensus 152 ~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 152 ELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34556677777777888888888888888888888777544
No 113
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=51.60 E-value=37 Score=28.87 Aligned_cols=26 Identities=12% Similarity=-0.059 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 30 LDYKTIQQELDNVLAENRKLEQEVGM 55 (134)
Q Consensus 30 ~~~~~lk~~~~~l~~en~~l~~e~~~ 55 (134)
..+..++.+++.|++|+.+|+.++.+
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~ 82 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKS 82 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777777777777665554
No 114
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=51.37 E-value=78 Score=21.76 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 29 ELDYKTIQQELDNVLAENRKLEQEV 53 (134)
Q Consensus 29 ~~~~~~lk~~~~~l~~en~~l~~e~ 53 (134)
+.++..|+.+++.+..|...-+.++
T Consensus 29 ~~~~~kL~~en~qlk~Ek~~~~~qv 53 (87)
T PF10883_consen 29 KKQNAKLQKENEQLKTEKAVAETQV 53 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335555555555555554444433
No 115
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=49.82 E-value=57 Score=19.75 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 35 IQQELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 35 lk~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
-+.....+..+...|..++..|..++..+.
T Consensus 23 kk~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 23 KKQREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566666666666666666665543
No 116
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=49.62 E-value=29 Score=27.80 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047986 37 QELDNVLAENRKLEQEVGMLKH 58 (134)
Q Consensus 37 ~~~~~l~~en~~l~~e~~~L~~ 58 (134)
.++.+++.||++|+.++++++.
T Consensus 116 sEF~~lr~e~EklkndlEk~ks 137 (220)
T KOG3156|consen 116 SEFANLRAENEKLKNDLEKLKS 137 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555544444444443
No 117
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=49.36 E-value=71 Score=26.73 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 36 QQELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 36 k~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
+++-++++.|-+.|.+.|.+||+....+.
T Consensus 247 Rae~E~l~ge~~~Le~rN~~LK~qa~~le 275 (294)
T KOG4571|consen 247 RAEKEALLGELEGLEKRNEELKDQASELE 275 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555544444
No 118
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=49.27 E-value=68 Score=25.65 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047986 49 LEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 49 l~~e~~~L~~e~~~~~~~l 67 (134)
+..|-.+|.++.++++.++
T Consensus 191 ~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 191 LQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred cccHHHHHHHHHHHHHHHH
Confidence 3333444444444444444
No 119
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=48.98 E-value=58 Score=26.31 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 31 DYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQ 65 (134)
Q Consensus 31 ~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~ 65 (134)
.+..|..+...+..+...|+.|+..|+..+.++=.
T Consensus 94 Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYE 128 (248)
T PF08172_consen 94 RNAELEEELRKQQQTISSLRREVESLRADNVKLYE 128 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555566666666665554433
No 120
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=48.50 E-value=84 Score=26.94 Aligned_cols=49 Identities=16% Similarity=0.227 Sum_probs=39.7
Q ss_pred hhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 20 RAREKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQMLL 68 (134)
Q Consensus 20 R~k~K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l~ 68 (134)
.++.+.+..+.....++.+++.+..++..+..+..+++.++.++...+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (398)
T PTZ00454 12 STTHTERDLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVK 60 (398)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666677778888999999999999999999999998887775
No 121
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=48.34 E-value=71 Score=21.17 Aligned_cols=31 Identities=29% Similarity=0.466 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 32 YKTIQQELDNVLAENRKLEQEVGMLKHELKK 62 (134)
Q Consensus 32 ~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~ 62 (134)
...++.|.|+++-|+=.|++++...+.|+..
T Consensus 10 L~~lQnEWDa~mLE~f~LRk~l~~~rqELs~ 40 (70)
T PF08606_consen 10 LSTLQNEWDALMLENFTLRKQLDQTRQELSH 40 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999998899888888888764
No 122
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=48.23 E-value=41 Score=25.48 Aligned_cols=10 Identities=50% Similarity=0.720 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 047986 51 QEVGMLKHEL 60 (134)
Q Consensus 51 ~e~~~L~~e~ 60 (134)
.|++.|+.|+
T Consensus 161 ~ei~~lk~el 170 (192)
T PF05529_consen 161 EEIEKLKKEL 170 (192)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 123
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=47.72 E-value=64 Score=29.94 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=34.6
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 22 REKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 22 k~K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
..|+++...++..++.+.+.++.+..+-+.|..+|+.++.+.+.++
T Consensus 99 e~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~ 144 (907)
T KOG2264|consen 99 EVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQL 144 (907)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHH
Confidence 4566777777888888888888887777778888888777766444
No 124
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=47.62 E-value=64 Score=29.60 Aligned_cols=41 Identities=20% Similarity=0.160 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 27 TIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 27 ~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
++-.-+..|-.+.+.|+.++++|.+|-..+...+..+.+++
T Consensus 508 RKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqql 548 (604)
T KOG3863|consen 508 RKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQL 548 (604)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555555555555555555444333
No 125
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=47.50 E-value=59 Score=23.24 Aligned_cols=55 Identities=15% Similarity=0.249 Sum_probs=26.8
Q ss_pred cccceecccchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 10 RQIAVWYQNRRAREKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 10 ~qVkiWFQNRR~k~K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
||.+.||-.+|.-- .....-..++.+.+.|+.|-.+-..-+.++.+.+...++.+
T Consensus 18 Rq~e~~FlqKr~~L---S~~kpe~~lkEEi~eLK~ElqRKe~Ll~Kh~~kI~~w~~lL 72 (106)
T PF11594_consen 18 RQMEAFFLQKRFEL---SAYKPEQVLKEEINELKEELQRKEQLLQKHYEKIDYWEKLL 72 (106)
T ss_pred HHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778887776655 22223344555555555554333333333333333333334
No 126
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=47.43 E-value=2.2e+02 Score=25.87 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 36 QQELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 36 k~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
+..+..+..|+.+|..+.+.|.+...++.
T Consensus 423 ks~lrv~qkEKEql~~EkQeL~~yi~~Le 451 (546)
T PF07888_consen 423 KSSLRVAQKEKEQLQEEKQELLEYIERLE 451 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444443333
No 127
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=47.30 E-value=85 Score=22.24 Aligned_cols=31 Identities=32% Similarity=0.368 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 29 ELDYKTIQQELDNVLAENRKLEQEVGMLKHE 59 (134)
Q Consensus 29 ~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e 59 (134)
..+....+++++.|..++..|+.++..|++.
T Consensus 56 ~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 56 QRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3444466666777777777777777777766
No 128
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=46.34 E-value=1.3e+02 Score=24.64 Aligned_cols=14 Identities=36% Similarity=0.458 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 047986 47 RKLEQEVGMLKHEL 60 (134)
Q Consensus 47 ~~l~~e~~~L~~e~ 60 (134)
.+|+.++.+|.+++
T Consensus 173 k~le~E~s~LeE~~ 186 (290)
T COG4026 173 KRLEVENSRLEEML 186 (290)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 129
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=45.91 E-value=92 Score=21.03 Aligned_cols=40 Identities=23% Similarity=0.340 Sum_probs=28.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 24 KIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKS 63 (134)
Q Consensus 24 K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~ 63 (134)
.....+.....|-...+.++.|+..|+.++.-|+.=+..+
T Consensus 24 ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 24 EILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666677788888888888888888888766554
No 130
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=45.05 E-value=1.3e+02 Score=23.76 Aligned_cols=37 Identities=14% Similarity=0.247 Sum_probs=16.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 25 IHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELK 61 (134)
Q Consensus 25 ~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~ 61 (134)
.+....+...++.+++.+...-..++.+..+|+.++.
T Consensus 58 ~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~ 94 (251)
T PF11932_consen 58 YRQLEREIENLEVYNEQLERQVASQEQELASLEQQIE 94 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444433
No 131
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=45.05 E-value=21 Score=27.40 Aligned_cols=28 Identities=36% Similarity=0.464 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 37 QELDNVLAENRKLEQEVGMLKHELKKSQQ 65 (134)
Q Consensus 37 ~~~~~l~~en~~l~~e~~~L~~e~~~~~~ 65 (134)
.|-+.|+.+.+||+.|...||.|+ .+++
T Consensus 24 dEKE~L~~~~QRLkDE~RDLKqEl-~V~e 51 (166)
T PF04880_consen 24 DEKENLREEVQRLKDELRDLKQEL-IVQE 51 (166)
T ss_dssp HHHHHHHHCH-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 345568888888888888888888 4443
No 132
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=43.96 E-value=92 Score=20.47 Aligned_cols=41 Identities=20% Similarity=0.366 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 27 TIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 27 ~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
.-...|..|+..+.....++..|..+|..|...+..+..++
T Consensus 25 ~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql 65 (70)
T PF04899_consen 25 EWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQL 65 (70)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777777777777777777777766665544
No 133
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=43.71 E-value=1.1e+02 Score=21.46 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 35 IQQELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 35 lk~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
++.++..+..+..+++..+..+++++..++
T Consensus 85 l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 85 LEERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443
No 134
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.54 E-value=99 Score=20.71 Aligned_cols=34 Identities=18% Similarity=0.338 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 047986 29 ELDYKTIQQELDNV-------LAENRKLEQEVGMLKHELKK 62 (134)
Q Consensus 29 ~~~~~~lk~~~~~l-------~~en~~l~~e~~~L~~e~~~ 62 (134)
..+...||.++..| ...+..|+.++.+|+.+...
T Consensus 24 QmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~ 64 (79)
T COG3074 24 QMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNG 64 (79)
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555443 44445566666666665543
No 135
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=43.17 E-value=1e+02 Score=21.80 Aligned_cols=41 Identities=22% Similarity=0.189 Sum_probs=29.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 26 HTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQM 66 (134)
Q Consensus 26 ~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~ 66 (134)
......+..+......+..+++.|..++..|.++...++..
T Consensus 46 ~~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 46 KNGAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34445666667777777788888888888888888776643
No 136
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=43.14 E-value=1.1e+02 Score=21.10 Aligned_cols=30 Identities=27% Similarity=0.446 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 35 IQQELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 35 lk~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
+....+.|..++..+..++.+|+.++...+
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e~ 76 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTER 76 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666666555433
No 137
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=42.07 E-value=1.4e+02 Score=24.74 Aligned_cols=9 Identities=33% Similarity=0.508 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 047986 38 ELDNVLAEN 46 (134)
Q Consensus 38 ~~~~l~~en 46 (134)
++..+..+.
T Consensus 65 eL~~LE~e~ 73 (314)
T PF04111_consen 65 ELEELEKER 73 (314)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 138
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.96 E-value=1.2e+02 Score=26.10 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047986 46 NRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 46 n~~l~~e~~~L~~e~~~~~ 64 (134)
..+|+.+.+.|..+...++
T Consensus 248 ~~kL~~~~etLEqq~~~L~ 266 (365)
T KOG2391|consen 248 KQKLVAMKETLEQQLQSLQ 266 (365)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 139
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=41.94 E-value=1.1e+02 Score=24.31 Aligned_cols=42 Identities=17% Similarity=0.255 Sum_probs=25.9
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 21 AREKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKK 62 (134)
Q Consensus 21 ~k~K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~ 62 (134)
++|.-.++-+++..||+.+.....|-..=..++..|+..+..
T Consensus 1 t~WevCqk~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e 42 (202)
T PF06818_consen 1 TKWEVCQKSGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRE 42 (202)
T ss_pred CcchHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 467777777888888887777666654434444444444433
No 140
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=41.80 E-value=1.3e+02 Score=24.22 Aligned_cols=38 Identities=32% Similarity=0.408 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 31 DYKTIQQELDNV-LAENRKLEQEVGMLKHELKKSQQMLL 68 (134)
Q Consensus 31 ~~~~lk~~~~~l-~~en~~l~~e~~~L~~e~~~~~~~l~ 68 (134)
....++.+...+ ..|-..|+.|+++|+.+++++.+.+.
T Consensus 102 ~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~lr 140 (220)
T KOG3156|consen 102 DFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSLR 140 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444432 34456799999999999999988775
No 141
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=41.04 E-value=92 Score=26.48 Aligned_cols=21 Identities=5% Similarity=0.110 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 047986 27 TIELDYKTIQQELDNVLAENR 47 (134)
Q Consensus 27 ~~~~~~~~lk~~~~~l~~en~ 47 (134)
..+.|+..|++++..|..+..
T Consensus 61 ~L~~EN~~Lk~Ena~L~~~l~ 81 (337)
T PRK14872 61 VLETENFLLKERIALLEERLK 81 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555544443
No 142
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription]
Probab=40.82 E-value=3.8 Score=36.82 Aligned_cols=24 Identities=21% Similarity=0.420 Sum_probs=21.1
Q ss_pred CcchhCCCCcccceecccchhhHH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREK 24 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K 24 (134)
|+.+|||..+.|..||-|-|.|.+
T Consensus 453 IS~qL~L~~sTV~NfFmNaRRRsl 476 (558)
T KOG2252|consen 453 ISQQLNLELSTVINFFMNARRRSL 476 (558)
T ss_pred HHHHhCCcHHHHHHHHHhhhhhcc
Confidence 578999999999999999888763
No 143
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=40.36 E-value=1.3e+02 Score=21.37 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 27 TIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQMLL 68 (134)
Q Consensus 27 ~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l~ 68 (134)
..+.....+-.++..|+..-..|-.|+..|+-|+..++..+.
T Consensus 12 ~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 12 DLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666677777777777788888888888888888775
No 144
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=40.09 E-value=58 Score=22.42 Aligned_cols=24 Identities=21% Similarity=0.345 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 32 YKTIQQELDNVLAENRKLEQEVGM 55 (134)
Q Consensus 32 ~~~lk~~~~~l~~en~~l~~e~~~ 55 (134)
...|+..++.+..+|..|..++..
T Consensus 82 ~~~L~~~l~~l~~eN~~L~~~i~~ 105 (109)
T PF03980_consen 82 REQLNARLQELEEENEALAEEIQE 105 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 145
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=39.70 E-value=1.7e+02 Score=22.44 Aligned_cols=30 Identities=13% Similarity=0.407 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 35 IQQELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 35 lk~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
|+..++.....|+.|..++..|+.+...+.
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~l~ 115 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWERLR 115 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555555555444443
No 146
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=39.66 E-value=1.1e+02 Score=20.34 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 38 ELDNVLAENRKLEQEVGMLKHELK 61 (134)
Q Consensus 38 ~~~~l~~en~~l~~e~~~L~~e~~ 61 (134)
+.+.+..+..+|+.|+.+|+-|..
T Consensus 43 ~l~~l~~~~~~l~~e~~~L~lE~~ 66 (97)
T PF04999_consen 43 ELQQLEKEIDQLQEENERLRLEIA 66 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 147
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=39.31 E-value=79 Score=25.47 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 33 KTIQQELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 33 ~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
..|...++.|..|..+|+-+++++..++.++.
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~ 88 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVV 88 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 35677888888888888888888888887765
No 148
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=39.09 E-value=86 Score=25.90 Aligned_cols=35 Identities=23% Similarity=0.510 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 33 KTIQQELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 33 ~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
..+..+++.|++|+++|+.+...++.++...++..
T Consensus 35 ~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~ 69 (308)
T PF11382_consen 35 DSLEDQFDSLREENDELRAELDALQAQLNAADQFI 69 (308)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677777777777777777766655443
No 149
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=38.25 E-value=80 Score=23.29 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 33 KTIQQELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 33 ~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
..|+..++..++-|.+|+++...|++++.+++
T Consensus 4 nEWktRYEtQ~E~N~QLekqi~~l~~kiek~r 35 (129)
T PF15372_consen 4 NEWKTRYETQLELNDQLEKQIIILREKIEKIR 35 (129)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788899999999999999999999998866
No 150
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=38.24 E-value=92 Score=24.91 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 31 DYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 31 ~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
+....+.+++.+..+...|+++.+.+..|..++-
T Consensus 166 el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLl 199 (216)
T KOG1962|consen 166 ELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLL 199 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 3333333444444444445555555555554443
No 151
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=38.20 E-value=5 Score=25.78 Aligned_cols=16 Identities=31% Similarity=0.713 Sum_probs=14.0
Q ss_pred CcchhCCCCcccceec
Q 047986 1 LARRLGLPPRQIAVWY 16 (134)
Q Consensus 1 LA~~l~L~e~qVkiWF 16 (134)
+|.+||+++.+|+.|=
T Consensus 28 IA~~Lgvs~~tIr~WK 43 (60)
T PF10668_consen 28 IAEKLGVSESTIRKWK 43 (60)
T ss_pred HHHHHCCCHHHHHHHh
Confidence 5889999999999884
No 152
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=38.15 E-value=1e+02 Score=22.08 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 29 ELDYKTIQQELDNVLAENRKLEQEVGMLKH 58 (134)
Q Consensus 29 ~~~~~~lk~~~~~l~~en~~l~~e~~~L~~ 58 (134)
..+...+|+++..|.+||.-|+-+++-|-+
T Consensus 71 ~~e~~rlkkk~~~LeEENNlLklKievLLD 100 (108)
T cd07429 71 GREVLRLKKKNQQLEEENNLLKLKIEVLLD 100 (108)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666665555554444
No 153
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=37.87 E-value=1.1e+02 Score=28.01 Aligned_cols=10 Identities=30% Similarity=0.521 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 047986 31 DYKTIQQELD 40 (134)
Q Consensus 31 ~~~~lk~~~~ 40 (134)
+++.++.+++
T Consensus 309 E~e~lq~~~d 318 (581)
T KOG0995|consen 309 EIEKLQKEND 318 (581)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 154
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=37.81 E-value=1.2e+02 Score=28.14 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 35 IQQELDNVLAENRKLEQEVGMLKHELK 61 (134)
Q Consensus 35 lk~~~~~l~~en~~l~~e~~~L~~e~~ 61 (134)
++.++..|..+..+++.++..|..++.
T Consensus 434 l~~e~~~L~~~~ee~k~eie~L~~~l~ 460 (652)
T COG2433 434 LEEENSELKRELEELKREIEKLESELE 460 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344333344444444443333
No 155
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=37.78 E-value=1.4e+02 Score=20.92 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=26.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 24 KIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 24 K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
|+..-.++....+.+.+.|..=+.+|.++....+.++++++..+
T Consensus 56 krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 56 KREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444445555556666666656666666666777777666543
No 156
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=37.71 E-value=2.1e+02 Score=22.85 Aligned_cols=37 Identities=14% Similarity=0.190 Sum_probs=21.1
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 22 REKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKH 58 (134)
Q Consensus 22 k~K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~ 58 (134)
+...++.+.+...|..-+.....|++..+.+.++|.-
T Consensus 25 ~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll~ 61 (214)
T PF07795_consen 25 NEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLLL 61 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555655566666666666666665553
No 157
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=37.66 E-value=1.4e+02 Score=26.05 Aligned_cols=54 Identities=7% Similarity=0.059 Sum_probs=38.6
Q ss_pred ccceecccchhhHHHHhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 047986 11 QIAVWYQNRRAREKIHTIELDYKTIQQELDNVLAENR--KLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 11 qVkiWFQNRR~k~K~~~~~~~~~~lk~~~~~l~~en~--~l~~e~~~L~~e~~~~~ 64 (134)
.+..-..+.+++-|..+.+.....|..+.+.+..+.. .++.++..+++++.+++
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (438)
T PTZ00361 46 KLPKVTPNTKCRLRLLKLERIKDYLLLEEEFITNQEAQKPAQEKNEAELKKVDDLR 101 (438)
T ss_pred cCCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 3444556777887777777777777777777766663 67888888888888766
No 158
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=37.15 E-value=2e+02 Score=24.45 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 28 IELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 28 ~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
.+.+...+.-.-+.++.|.+.|++|....++|.++++
T Consensus 37 le~~le~l~vqe~yik~e~~~lkre~~~aqeevkriq 73 (408)
T KOG0727|consen 37 LERELELLEVQEDYIKDEQRNLKRELLHAQEEVKRIQ 73 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555556677788888888888888888876
No 159
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=37.05 E-value=1.8e+02 Score=22.85 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=22.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 26 HTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 26 ~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
++...++..+++..+.+.+.|.+|..++..|+..+.-++
T Consensus 18 ~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Q 56 (193)
T PF14662_consen 18 QKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQ 56 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666555555555554443
No 160
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=36.79 E-value=1.6e+02 Score=23.16 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 35 IQQELDNVLAENRKLEQEVGMLKHELKKSQQMLL 68 (134)
Q Consensus 35 lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l~ 68 (134)
+-.+++.|+.....|..++.+|+.++..+...+.
T Consensus 110 lE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~ 143 (198)
T KOG0483|consen 110 LEKDYESLKRQLESLRSENDRLQSEVQELVAELS 143 (198)
T ss_pred hhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 3345666777777888888888888877776664
No 161
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=35.72 E-value=2.5e+02 Score=23.55 Aligned_cols=21 Identities=52% Similarity=0.559 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047986 47 RKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 47 ~~l~~e~~~L~~e~~~~~~~l 67 (134)
++|..++.+++.++.+.+...
T Consensus 112 e~Leqelkr~KsELErsQ~~~ 132 (307)
T PF10481_consen 112 EKLEQELKRCKSELERSQQAA 132 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 346666666666666655433
No 162
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=35.70 E-value=1.5e+02 Score=20.45 Aligned_cols=28 Identities=18% Similarity=0.321 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 32 YKTIQQELDNVLAENRKLEQEVGMLKHE 59 (134)
Q Consensus 32 ~~~lk~~~~~l~~en~~l~~e~~~L~~e 59 (134)
+..+..++..+..|+.+|+.++..-..|
T Consensus 51 v~~L~~e~~~l~~E~e~L~~~l~~e~~E 78 (87)
T PF12709_consen 51 VDELENENKALKRENEQLKKKLDTEREE 78 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555544444443333
No 163
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=35.43 E-value=7.2 Score=23.81 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=18.2
Q ss_pred CcchhCCCCcccceecccchhhHHHHhhHHHHHHH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTIELDYKTI 35 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~~~~~~~l 35 (134)
||+..|+++.+|.-|+.++...+.......-+..+
T Consensus 16 La~~~gis~~tl~~~~~~~~~~~~~~~l~~ia~~l 50 (63)
T PF13443_consen 16 LARKTGISRSTLSRILNGKPSNPSLDTLEKIAKAL 50 (63)
T ss_dssp HHHHHT--HHHHHHHHTTT-----HHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHhcccccccHHHHHHHHHHc
Confidence 47788888888888887775555544433333333
No 164
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=35.24 E-value=45 Score=22.13 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=15.9
Q ss_pred CcchhCCCCcccceecccchh
Q 047986 1 LARRLGLPPRQIAVWYQNRRA 21 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~ 21 (134)
+|..+|++++.|+.|-+..--
T Consensus 7 ~A~~~gvs~~tLr~ye~~Gli 27 (91)
T cd04766 7 AAELSGMHPQTLRLYERLGLL 27 (91)
T ss_pred HHHHHCcCHHHHHHHHHCCCc
Confidence 467889999999998765433
No 165
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=35.15 E-value=1.1e+02 Score=18.98 Aligned_cols=21 Identities=33% Similarity=0.365 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047986 43 LAENRKLEQEVGMLKHELKKS 63 (134)
Q Consensus 43 ~~en~~l~~e~~~L~~e~~~~ 63 (134)
..+...|+.|+..|++++...
T Consensus 28 ~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 28 RKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555556655543
No 166
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=34.88 E-value=1.9e+02 Score=21.47 Aligned_cols=14 Identities=21% Similarity=0.529 Sum_probs=5.2
Q ss_pred hhHHHHHHHHHHHH
Q 047986 27 TIELDYKTIQQELD 40 (134)
Q Consensus 27 ~~~~~~~~lk~~~~ 40 (134)
........+.++++
T Consensus 21 sle~~v~~LEreLe 34 (140)
T PF10473_consen 21 SLEDHVESLERELE 34 (140)
T ss_pred hHHHHHHHHHHHHH
Confidence 33333333333333
No 167
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=34.81 E-value=1.9e+02 Score=24.04 Aligned_cols=26 Identities=38% Similarity=0.521 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 35 IQQELDNVLAENRKLEQEVGMLKHEL 60 (134)
Q Consensus 35 lk~~~~~l~~en~~l~~e~~~L~~e~ 60 (134)
++.+.+.+..+-..|+++...+..++
T Consensus 55 le~Ee~~l~~eL~~LE~e~~~l~~el 80 (314)
T PF04111_consen 55 LEQEEEELLQELEELEKEREELDQEL 80 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444333333333
No 168
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=34.79 E-value=1.5e+02 Score=23.45 Aligned_cols=34 Identities=24% Similarity=0.278 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 31 DYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 31 ~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
++..|..+++.+.+|...|+.++..|++-...++
T Consensus 126 ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~ 159 (200)
T PF07412_consen 126 ENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQ 159 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555566666666666666555444444
No 169
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=34.77 E-value=1.3e+02 Score=24.96 Aligned_cols=35 Identities=20% Similarity=0.407 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 30 LDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 30 ~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
.++..++.....+..|...+++++..+++++.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (364)
T TIGR01242 6 VRIRKLEDEKRSLEKEKIRLERELERLRSEIERLR 40 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666777777777777777777777777776654
No 170
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=34.44 E-value=94 Score=22.99 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 047986 48 KLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 48 ~l~~e~~~L~~e~~~~~~~l 67 (134)
.|..++..|+.++..+...+
T Consensus 113 el~~~i~~l~~e~~~l~~kL 132 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKL 132 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555444
No 171
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=34.35 E-value=1.2e+02 Score=19.12 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 34 TIQQELDNVLAENRKLEQEVGMLKHELKKSQQMLL 68 (134)
Q Consensus 34 ~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l~ 68 (134)
.+++.+ .+..++..|..|+..|..++..++..+.
T Consensus 24 ~l~rY~-~vL~~R~~l~~e~~~L~~qN~eLr~lLk 57 (60)
T PF14775_consen 24 FLKRYN-KVLLDRAALIQEKESLEQQNEELRSLLK 57 (60)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 3456677888899999998888887664
No 172
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=34.14 E-value=1.8e+02 Score=22.90 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047986 46 NRKLEQEVGMLKHELKK 62 (134)
Q Consensus 46 n~~l~~e~~~L~~e~~~ 62 (134)
++.|..++..|++++.+
T Consensus 97 ~q~L~~~i~~Lqeen~k 113 (193)
T PF14662_consen 97 QQSLVAEIETLQEENGK 113 (193)
T ss_pred HHHHHHHHHHHHHHHhH
Confidence 33333333334433333
No 173
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=34.03 E-value=1.3e+02 Score=19.89 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=28.7
Q ss_pred ceecccchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 13 AVWYQNRRAREKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQ 65 (134)
Q Consensus 13 kiWFQNRR~k~K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~ 65 (134)
+|.|-..|.. +........+-.++-.|..+...|+.++..++..+.++..
T Consensus 22 rI~fLee~l~---~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 22 RIYFLEERLQ---KLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred HHHHHHHHHH---hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455444433 1223344445555666777777777777777777666553
No 174
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=33.85 E-value=1.1e+02 Score=24.16 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047986 47 RKLEQEVGMLKHELKKS 63 (134)
Q Consensus 47 ~~l~~e~~~L~~e~~~~ 63 (134)
..++.++..|++++..+
T Consensus 135 e~~~eEi~~lk~en~~L 151 (200)
T PF07412_consen 135 EQKDEEIAKLKEENEEL 151 (200)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444433
No 175
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=33.68 E-value=1.9e+02 Score=26.74 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047986 30 LDYKTIQQELDNVLAENR 47 (134)
Q Consensus 30 ~~~~~lk~~~~~l~~en~ 47 (134)
.++..|+.+++.++.+..
T Consensus 436 ~e~~~L~~~~ee~k~eie 453 (652)
T COG2433 436 EENSELKRELEELKREIE 453 (652)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 176
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=33.63 E-value=1.7e+02 Score=26.18 Aligned_cols=28 Identities=18% Similarity=0.154 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 37 QELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 37 ~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
+..+.+.++-+.|+.++..|+++++.+.
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQVKALG 124 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4444566666678888888887775433
No 177
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=33.19 E-value=1.3e+02 Score=19.00 Aligned_cols=31 Identities=13% Similarity=0.281 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 35 IQQELDNVLAENRKLEQEVGMLKHELKKSQQ 65 (134)
Q Consensus 35 lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~ 65 (134)
+..+...+...-..+++|++.++++++.+.+
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~e 35 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEE 35 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555555443
No 178
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=32.81 E-value=1.2e+02 Score=28.34 Aligned_cols=12 Identities=42% Similarity=0.650 Sum_probs=6.4
Q ss_pred cchhCCCCcccc
Q 047986 2 ARRLGLPPRQIA 13 (134)
Q Consensus 2 A~~l~L~e~qVk 13 (134)
|+.+||++.-|.
T Consensus 489 A~~~Glp~~ii~ 500 (771)
T TIGR01069 489 AQRYGIPHFIIE 500 (771)
T ss_pred HHHhCcCHHHHH
Confidence 455566555543
No 179
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=32.60 E-value=1.4e+02 Score=19.14 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 31 DYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 31 ~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
.+......+......|..|..++..|+.++..++
T Consensus 26 ~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 26 ANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455555556666777777777777776554
No 180
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=32.60 E-value=1.2e+02 Score=28.46 Aligned_cols=12 Identities=58% Similarity=0.941 Sum_probs=6.2
Q ss_pred cchhCCCCcccc
Q 047986 2 ARRLGLPPRQIA 13 (134)
Q Consensus 2 A~~l~L~e~qVk 13 (134)
|+.+||++.-|.
T Consensus 494 A~~~Glp~~ii~ 505 (782)
T PRK00409 494 AKRLGLPENIIE 505 (782)
T ss_pred HHHhCcCHHHHH
Confidence 445555555543
No 181
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.49 E-value=2e+02 Score=24.76 Aligned_cols=39 Identities=18% Similarity=0.163 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 29 ELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 29 ~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
+++...+.++.+.+++-.+.|.+-...|+++.+.+.+++
T Consensus 224 eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~ 262 (365)
T KOG2391|consen 224 EEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQL 262 (365)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHH
Confidence 344455555555555544555555555555555554444
No 182
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=32.37 E-value=1.9e+02 Score=26.29 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 35 IQQELDNVLAENRKLEQEVGMLKHEL 60 (134)
Q Consensus 35 lk~~~~~l~~en~~l~~e~~~L~~e~ 60 (134)
|...+..|..+...|+.++..|+.++
T Consensus 155 L~~~~~~Le~e~~~l~~~v~~l~~eL 180 (546)
T PF07888_consen 155 LLKENEQLEEEVEQLREEVERLEAEL 180 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444
No 183
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=32.26 E-value=2.4e+02 Score=21.96 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 44 AENRKLEQEVGMLKHELKKSQQMLL 68 (134)
Q Consensus 44 ~en~~l~~e~~~L~~e~~~~~~~l~ 68 (134)
.+...|+.++..|..++..+...+.
T Consensus 106 ~e~~elr~~~~~l~~~i~~~~~~~~ 130 (181)
T KOG3335|consen 106 QEIMELRLKVEKLENAIAELTKFFS 130 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445577777888777777665554
No 184
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=32.08 E-value=2.6e+02 Score=25.12 Aligned_cols=22 Identities=27% Similarity=0.736 Sum_probs=13.8
Q ss_pred ceec---ccchhhHHHHhhHHHHHH
Q 047986 13 AVWY---QNRRAREKIHTIELDYKT 34 (134)
Q Consensus 13 kiWF---QNRR~k~K~~~~~~~~~~ 34 (134)
-+|| ||+.+|.+-.+.-.+...
T Consensus 229 gcw~ay~Qnk~akehv~km~kdle~ 253 (575)
T KOG4403|consen 229 GCWFAYRQNKKAKEHVNKMMKDLEG 253 (575)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 4687 888888776554444433
No 185
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=31.79 E-value=1.3e+02 Score=21.17 Aligned_cols=29 Identities=31% Similarity=0.515 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 37 QELDNVLAENRKLEQEVGMLKHELKKSQQ 65 (134)
Q Consensus 37 ~~~~~l~~en~~l~~e~~~L~~e~~~~~~ 65 (134)
..+..+.++.+.+..+.++++.++.+...
T Consensus 80 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~ 108 (118)
T PF13815_consen 80 SQLEQLEERLQELQQEIEKLKQKLKKQKE 108 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555554443
No 186
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=31.62 E-value=8.8 Score=36.12 Aligned_cols=26 Identities=27% Similarity=0.608 Sum_probs=22.4
Q ss_pred cchhCCCCcccceecccchhhHHHHh
Q 047986 2 ARRLGLPPRQIAVWYQNRRAREKIHT 27 (134)
Q Consensus 2 A~~l~L~e~qVkiWFQNRR~k~K~~~ 27 (134)
|.+.||+.+-|+.||+++++......
T Consensus 590 a~qvglp~~vvk~wfE~~~a~e~sv~ 615 (1007)
T KOG3623|consen 590 AQQVGLPFAVVKAWFEDEEAEEMSVE 615 (1007)
T ss_pred HHHhcccHHHHHHHHHhhhhhhhhhc
Confidence 56789999999999999998877654
No 187
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=31.61 E-value=2.8e+02 Score=22.36 Aligned_cols=31 Identities=32% Similarity=0.488 Sum_probs=12.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 26 HTIELDYKTIQQELDNVLAENRKLEQEVGML 56 (134)
Q Consensus 26 ~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L 56 (134)
+..+.......+..+.|..++..|+.+.++|
T Consensus 108 ~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql 138 (232)
T KOG2483|consen 108 QSLERKSATQQQDIEDLSRENRKLKARLEQL 138 (232)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333334444444444444444444433
No 188
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=31.20 E-value=3e+02 Score=22.66 Aligned_cols=48 Identities=27% Similarity=0.464 Sum_probs=37.4
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 21 AREKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQMLL 68 (134)
Q Consensus 21 ~k~K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l~ 68 (134)
.+........+....+..++++..+...|...+++.+.|+.+.+.-|.
T Consensus 167 l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~ 214 (267)
T PF10234_consen 167 LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQ 214 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566777888888888888888899999999999988876664
No 189
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=31.10 E-value=1.6e+02 Score=21.39 Aligned_cols=15 Identities=40% Similarity=0.419 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 047986 45 ENRKLEQEVGMLKHE 59 (134)
Q Consensus 45 en~~l~~e~~~L~~e 59 (134)
|...|+.|+..|++|
T Consensus 104 E~n~L~eEN~~L~eE 118 (120)
T PF10482_consen 104 EMNTLKEENKKLKEE 118 (120)
T ss_pred HHHhHHHHHHHHHHH
Confidence 333444444444443
No 190
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=30.42 E-value=2.3e+02 Score=21.04 Aligned_cols=33 Identities=27% Similarity=0.465 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 31 DYKTIQQELDNVLAENRKLEQEVGMLKHELKKS 63 (134)
Q Consensus 31 ~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~ 63 (134)
++..++.++..+..+..+|..+...++.+...+
T Consensus 53 eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L 85 (140)
T PF10473_consen 53 EIETLEEELEELTSELNQLELELDTLRSEKENL 85 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333
No 191
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=30.39 E-value=1.9e+02 Score=23.68 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 30 LDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 30 ~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
.++..++++.+.-+++...++.++..|+++.+.++.+.
T Consensus 186 ~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~ 223 (258)
T PF15397_consen 186 LENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQA 223 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555555555555555555555555433
No 192
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=29.95 E-value=3.2e+02 Score=24.05 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 40 DNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 40 ~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
.+|+.|++.|.++.+..+.++.++..++
T Consensus 352 aaLrkerd~L~keLeekkreleql~~q~ 379 (442)
T PF06637_consen 352 AALRKERDSLAKELEEKKRELEQLKMQL 379 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355556666667777776676666555
No 193
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=29.74 E-value=1.4e+02 Score=19.09 Aligned_cols=31 Identities=39% Similarity=0.457 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 37 QELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 37 ~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
+++..+..|...|+..+--|++||...+...
T Consensus 3 ~ELr~VL~ERNeLK~~v~~leEEL~~yk~~~ 33 (60)
T PF11461_consen 3 QELREVLQERNELKARVFLLEEELAYYKSEL 33 (60)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3567788888899999999999998877555
No 194
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=29.65 E-value=1.7e+02 Score=27.65 Aligned_cols=54 Identities=24% Similarity=0.426 Sum_probs=45.7
Q ss_pred ceec-ccchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 13 AVWY-QNRRAREKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 13 kiWF-QNRR~k~K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
++|- .-.|.+..++....++..++.++..+..++.+++.++..|+++| +++..+
T Consensus 35 ~fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~ 89 (775)
T PF10174_consen 35 TFWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQREL 89 (775)
T ss_pred cccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHH
Confidence 3674 56688888888888999999999999999999999999999999 776443
No 195
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=29.24 E-value=2.2e+02 Score=24.00 Aligned_cols=35 Identities=37% Similarity=0.505 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 30 LDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 30 ~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
.+...++..+..+..+...++.++..+++++..++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 15 EQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555556666666666666666666666665544
No 196
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=29.05 E-value=2.3e+02 Score=20.73 Aligned_cols=42 Identities=26% Similarity=0.487 Sum_probs=21.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 26 HTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 26 ~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
+....+....-.++..|...+..|..++..+...+..+...+
T Consensus 24 K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l 65 (143)
T PF12718_consen 24 KQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL 65 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555555555555555555555544433
No 197
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=28.95 E-value=1.6e+02 Score=19.71 Aligned_cols=26 Identities=38% Similarity=0.377 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 34 TIQQELDNVLAENRKLEQEVGMLKHE 59 (134)
Q Consensus 34 ~lk~~~~~l~~en~~l~~e~~~L~~e 59 (134)
.++.++..|+.+.+.|+.+.++++.+
T Consensus 4 ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566666666666666666666655
No 198
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=28.93 E-value=1.9e+02 Score=27.54 Aligned_cols=43 Identities=19% Similarity=0.405 Sum_probs=27.8
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 22 REKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 22 k~K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
..++.....+...+++.++.+..++++|...++.|+.++.++.
T Consensus 215 le~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 215 LEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3445555566677777777777777766666666666665554
No 199
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=28.86 E-value=2.5e+02 Score=23.03 Aligned_cols=46 Identities=15% Similarity=0.309 Sum_probs=36.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 23 EKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQMLL 68 (134)
Q Consensus 23 ~K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l~ 68 (134)
+..+....++..-+...+.+.++...|+.+|..|..+....+..++
T Consensus 186 ~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re~iF 231 (258)
T PF15397_consen 186 LENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPREVIF 231 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHhh
Confidence 4455566677777888888999999999999999998887777775
No 200
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=28.73 E-value=2.6e+02 Score=25.79 Aligned_cols=54 Identities=30% Similarity=0.435 Sum_probs=43.5
Q ss_pred eecccchhh--HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 14 VWYQNRRAR--EKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 14 iWFQNRR~k--~K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
|--||+|.| .+....+.+...|+.+-+.|..|...+.+....++.++..+...+
T Consensus 500 vAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~L~~~V 555 (604)
T KOG3863|consen 500 VAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSELYQEV 555 (604)
T ss_pred hhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666555 456778889999999999999999999999999998887766544
No 201
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=28.09 E-value=1e+02 Score=22.33 Aligned_cols=10 Identities=30% Similarity=0.451 Sum_probs=4.5
Q ss_pred ecccchhhHH
Q 047986 15 WYQNRRAREK 24 (134)
Q Consensus 15 WFQNRR~k~K 24 (134)
+|...|...|
T Consensus 93 ~~E~~Rs~~k 102 (134)
T PF07047_consen 93 IYEYWRSARK 102 (134)
T ss_pred HHHHHHHHhh
Confidence 4444444444
No 202
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=27.84 E-value=1.6e+02 Score=24.17 Aligned_cols=21 Identities=10% Similarity=0.154 Sum_probs=13.6
Q ss_pred CCCcchhhhhhccCCCCCCCc
Q 047986 106 LLPMDELYSCLIRPQGQPENH 126 (134)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~ 126 (134)
++||.|+..--+-.++.||.+
T Consensus 260 ~vpLsei~~awyPNdM~fgqK 280 (289)
T COG4985 260 SVPLSEILDAWYPNDMNFGQK 280 (289)
T ss_pred eccHHHHHHhhCcCcchHHHH
Confidence 566777766666666666643
No 203
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=27.18 E-value=3.6e+02 Score=22.43 Aligned_cols=37 Identities=19% Similarity=0.308 Sum_probs=15.7
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 22 REKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKH 58 (134)
Q Consensus 22 k~K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~ 58 (134)
|.+......+....+.+.+.+..+...+...+....+
T Consensus 210 k~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~ 246 (312)
T smart00787 210 KEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTN 246 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444433333333
No 204
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=27.04 E-value=3.1e+02 Score=21.92 Aligned_cols=8 Identities=38% Similarity=1.215 Sum_probs=3.9
Q ss_pred cceecccc
Q 047986 12 IAVWYQNR 19 (134)
Q Consensus 12 VkiWFQNR 19 (134)
+..||+.+
T Consensus 189 ~e~~y~~k 196 (312)
T PF00038_consen 189 LEEWYQSK 196 (312)
T ss_dssp HHHHHHHH
T ss_pred hhhhcccc
Confidence 33455544
No 205
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=26.99 E-value=2.9e+02 Score=21.18 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 31 DYKTIQQELDNVLAENRKLEQEVGMLKHELK 61 (134)
Q Consensus 31 ~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~ 61 (134)
.....+..++.|..+..+|..+...+.+++.
T Consensus 89 QLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 89 QLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443
No 206
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=26.98 E-value=3.1e+02 Score=23.10 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 30 LDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 30 ~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
.+...|..+++.|..++..|.+++...+..+..+.
T Consensus 101 ~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~ 135 (355)
T PF09766_consen 101 EQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLP 135 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33444444445555555555555554444444443
No 207
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=26.56 E-value=2.9e+02 Score=22.60 Aligned_cols=39 Identities=26% Similarity=0.278 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 047986 30 LDYKTIQQELDNVLAEN---RKLEQEVGMLKHELKKSQQMLL 68 (134)
Q Consensus 30 ~~~~~lk~~~~~l~~en---~~l~~e~~~L~~e~~~~~~~l~ 68 (134)
.++..+..+++.|+.++ .++..++..|++|+.+++..+.
T Consensus 66 ~~~~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~ 107 (284)
T COG1792 66 KSLKDLALENEELKKELAELEQLLEEVESLEEENKRLKELLD 107 (284)
T ss_pred HHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444555555555444 3456677888888888887774
No 208
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=26.20 E-value=2.6e+02 Score=22.70 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047986 44 AENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 44 ~en~~l~~e~~~L~~e~~~~~ 64 (134)
.+-+.|+++|+...+.+++++
T Consensus 74 ~~m~~Lea~VEkrD~~IQqLq 94 (272)
T KOG4552|consen 74 QLMRTLEAHVEKRDEVIQQLQ 94 (272)
T ss_pred HHHHHHHHHHHHhHHHHHHHH
Confidence 333445555555555554444
No 209
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=26.10 E-value=3.1e+02 Score=24.12 Aligned_cols=9 Identities=0% Similarity=0.453 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 047986 31 DYKTIQQEL 39 (134)
Q Consensus 31 ~~~~lk~~~ 39 (134)
++..+..++
T Consensus 46 ei~~~~~~i 54 (420)
T COG4942 46 EIAALEKKI 54 (420)
T ss_pred HHHHHHHHH
Confidence 333333333
No 210
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=25.96 E-value=9.2 Score=23.44 Aligned_cols=19 Identities=21% Similarity=0.534 Sum_probs=14.3
Q ss_pred CcchhCCCCcccceecccc
Q 047986 1 LARRLGLPPRQIAVWYQNR 19 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNR 19 (134)
+|+++|++..+|.-|..|+
T Consensus 28 ia~~fgv~~sTv~~I~K~k 46 (53)
T PF04218_consen 28 IAREFGVSRSTVSTILKNK 46 (53)
T ss_dssp HHHHHT--CCHHHHHHHCH
T ss_pred HHHHhCCCHHHHHHHHHhH
Confidence 4788999999999888765
No 211
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=25.91 E-value=1.3e+02 Score=20.93 Aligned_cols=19 Identities=16% Similarity=0.443 Sum_probs=11.8
Q ss_pred chhCCCCcccceecccchh
Q 047986 3 RRLGLPPRQIAVWYQNRRA 21 (134)
Q Consensus 3 ~~l~L~e~qVkiWFQNRR~ 21 (134)
+.+|++-..|+-.+.....
T Consensus 53 r~~G~sl~eI~~~l~~~~~ 71 (116)
T cd04769 53 RQLGFTLAELKAIFAGHEG 71 (116)
T ss_pred HHcCCCHHHHHHHHhcccc
Confidence 4567777777766654443
No 212
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=25.62 E-value=1.3e+02 Score=25.38 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047986 48 KLEQEVGMLKHELKKSQQM 66 (134)
Q Consensus 48 ~l~~e~~~L~~e~~~~~~~ 66 (134)
-|+.++..|-+||+-+...
T Consensus 323 VLENQNKaLIEELKtLKeL 341 (348)
T KOG3584|consen 323 VLENQNKALIEELKTLKEL 341 (348)
T ss_pred HHhcccHHHHHHHHHHHHH
Confidence 3666666666666665543
No 213
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=25.40 E-value=2.6e+02 Score=20.82 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=25.1
Q ss_pred chhhHHHHhhHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
Q 047986 19 RRAREKIHTIELDYKTIQQELDN------------VLAENRKLEQEVGMLKHELKK 62 (134)
Q Consensus 19 RR~k~K~~~~~~~~~~lk~~~~~------------l~~en~~l~~e~~~L~~e~~~ 62 (134)
.+...+.++.+.|...+++|... +.++-++++.|.+.++++...
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666666665533 555556666666666665554
No 214
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=25.38 E-value=2.6e+02 Score=20.00 Aligned_cols=31 Identities=23% Similarity=0.231 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 35 IQQELDNVLAENRKLEQEVGMLKHELKKSQQ 65 (134)
Q Consensus 35 lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~ 65 (134)
|+.-++.|-..-+..+.|+..|+.|++-+-+
T Consensus 68 LQnTLdDLSqRVdsVKEEnLKLrSENQVLGQ 98 (120)
T KOG3650|consen 68 LQNTLDDLSQRVDSVKEENLKLRSENQVLGQ 98 (120)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Confidence 3444444433333444444444444443333
No 215
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=24.97 E-value=2.4e+02 Score=20.09 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 36 QQELDNVLAENRKLEQEVGMLKHELKKSQQMLL 68 (134)
Q Consensus 36 k~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l~ 68 (134)
..+...++.++..|+.|+--|+.+++-+-.|+.
T Consensus 71 ~~e~~rlkkk~~~LeEENNlLklKievLLDMLt 103 (108)
T cd07429 71 GREVLRLKKKNQQLEEENNLLKLKIEVLLDMLA 103 (108)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667777777777777777776666663
No 216
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=24.90 E-value=1.5e+02 Score=22.22 Aligned_cols=17 Identities=35% Similarity=0.614 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047986 42 VLAENRKLEQEVGMLKH 58 (134)
Q Consensus 42 l~~en~~l~~e~~~L~~ 58 (134)
+..++.+|+.++..|++
T Consensus 78 lr~~~e~L~~eie~l~~ 94 (177)
T PF07798_consen 78 LRSENEKLQREIEKLRQ 94 (177)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 217
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=24.84 E-value=3e+02 Score=20.67 Aligned_cols=8 Identities=38% Similarity=0.546 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 047986 48 KLEQEVGM 55 (134)
Q Consensus 48 ~l~~e~~~ 55 (134)
.|++|...
T Consensus 165 ~lk~el~~ 172 (192)
T PF05529_consen 165 KLKKELEK 172 (192)
T ss_pred HHHHHHHH
Confidence 33333333
No 218
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=24.63 E-value=2.7e+02 Score=24.98 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 34 TIQQELDNVLAENRKLEQEVGMLKHELKKSQQMLL 68 (134)
Q Consensus 34 ~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l~ 68 (134)
.++..++.|.+.|.+|.......++++.+++.++.
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 39 (512)
T TIGR03689 5 ELQATNSSLGARNAKLAELLKAARDKLSKLKSQLE 39 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666555555555555555553
No 219
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=24.58 E-value=1.7e+02 Score=21.26 Aligned_cols=18 Identities=39% Similarity=0.396 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047986 41 NVLAENRKLEQEVGMLKH 58 (134)
Q Consensus 41 ~l~~en~~l~~e~~~L~~ 58 (134)
.|.++-.+|+-||..|+.
T Consensus 7 eLaaeL~kLqmENk~LKk 24 (118)
T PF05812_consen 7 ELAAELQKLQMENKALKK 24 (118)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 220
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.55 E-value=1.3e+02 Score=27.75 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=14.8
Q ss_pred ccchhhHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 047986 17 QNRRAREKIHTIELDYKTIQQELDNVLAENRK 48 (134)
Q Consensus 17 QNRR~k~K~~~~~~~~~~lk~~~~~l~~en~~ 48 (134)
|-+|.|.-.+...-.-..+-+++-.|.+||-.
T Consensus 150 qR~rlr~elKe~KfRE~RllseYSELEEENIs 181 (772)
T KOG0999|consen 150 QRRRLRDELKEYKFREARLLSEYSELEEENIS 181 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 34455544444444444444455555555533
No 221
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=23.59 E-value=1.5e+02 Score=24.95 Aligned_cols=28 Identities=32% Similarity=0.502 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 32 YKTIQQELDNVLAENRKLEQEVGMLKHE 59 (134)
Q Consensus 32 ~~~lk~~~~~l~~en~~l~~e~~~L~~e 59 (134)
...|+.+...|.+||..|+.|...|+.+
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~e 189 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTE 189 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHH
No 222
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=23.23 E-value=2.2e+02 Score=26.57 Aligned_cols=33 Identities=27% Similarity=0.468 Sum_probs=18.6
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 21 AREKIHTIELDYKTIQQELDNVLAENRKLEQEV 53 (134)
Q Consensus 21 ~k~K~~~~~~~~~~lk~~~~~l~~en~~l~~e~ 53 (134)
+|.|++..+.|+..|+.++....++...++.++
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666655544444444433
No 223
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=23.11 E-value=2.5e+02 Score=22.98 Aligned_cols=34 Identities=32% Similarity=0.440 Sum_probs=20.7
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 047986 29 ELDYKTIQQEL---DNVLAENRKLEQEVGMLKHELKK 62 (134)
Q Consensus 29 ~~~~~~lk~~~---~~l~~en~~l~~e~~~L~~e~~~ 62 (134)
..+++.++.++ ..+..+...|+.|+.+|++.+..
T Consensus 72 ~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~ 108 (284)
T COG1792 72 ALENEELKKELAELEQLLEEVESLEEENKRLKELLDF 108 (284)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34444455444 34555667788888888876654
No 224
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=22.93 E-value=92 Score=27.87 Aligned_cols=27 Identities=11% Similarity=0.250 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 38 ELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 38 ~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
++++|+.|-+.|++++..+.+.+.++.
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~e 58 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKVE 58 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhh
Confidence 555555555555555554444444433
No 225
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=22.87 E-value=2.6e+02 Score=19.10 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 33 KTIQQELDNVLAENRKLEQEVGMLKHELKKSQQMLL 68 (134)
Q Consensus 33 ~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l~ 68 (134)
..+...++.|.+.+.+|..+..+|-+...+.+..+.
T Consensus 36 D~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~ 71 (83)
T PF03670_consen 36 DQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQ 71 (83)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677778888888888888777777776654
No 226
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=22.61 E-value=3.4e+02 Score=20.42 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 40 DNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 40 ~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
+....+.+.|...+.+|.+++.++...+
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~ 112 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKL 112 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666777778888887777766444
No 227
>PRK11546 zraP zinc resistance protein; Provisional
Probab=22.37 E-value=79 Score=23.66 Aligned_cols=41 Identities=15% Similarity=0.291 Sum_probs=23.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 047986 24 KIHTIELDYKTIQQELDNVLAEN-------RKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 24 K~~~~~~~~~~lk~~~~~l~~en-------~~l~~e~~~L~~e~~~~~ 64 (134)
+....+.+...-+.++++|...+ ..|.+|+..|+.++...+
T Consensus 62 ~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r 109 (143)
T PRK11546 62 QTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELR 109 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555554332 467888888887776544
No 228
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=22.33 E-value=2.3e+02 Score=18.35 Aligned_cols=15 Identities=47% Similarity=0.645 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 047986 46 NRKLEQEVGMLKHEL 60 (134)
Q Consensus 46 n~~l~~e~~~L~~e~ 60 (134)
+.+|+.++..|+.++
T Consensus 49 ~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 49 NNKLKEENEALRKEL 63 (69)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 229
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=22.22 E-value=3.1e+02 Score=23.02 Aligned_cols=22 Identities=9% Similarity=0.283 Sum_probs=12.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHH
Q 047986 26 HTIELDYKTIQQELDNVLAENR 47 (134)
Q Consensus 26 ~~~~~~~~~lk~~~~~l~~en~ 47 (134)
.....++..|++++..|++.-.
T Consensus 56 e~ek~e~s~LkREnq~l~e~c~ 77 (307)
T PF10481_consen 56 EEEKNEYSALKRENQSLMESCE 77 (307)
T ss_pred HHHhhhhhhhhhhhhhHHHHHH
Confidence 3344556667777666655543
No 230
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=21.97 E-value=3.1e+02 Score=24.95 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 42 VLAENRKLEQEVGMLKHELKKSQQM 66 (134)
Q Consensus 42 l~~en~~l~~e~~~L~~e~~~~~~~ 66 (134)
++.....++.++..|+.++.++...
T Consensus 160 ~krr~~~le~e~~~Lk~en~rl~~~ 184 (546)
T KOG0977|consen 160 LKRRIKALEDELKRLKAENSRLREE 184 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3333334444444444444444333
No 231
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=21.65 E-value=2.8e+02 Score=19.00 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q 047986 32 YKTIQQELDNVLAEN------RKLEQEVGMLKHELKKSQQ 65 (134)
Q Consensus 32 ~~~lk~~~~~l~~en------~~l~~e~~~L~~e~~~~~~ 65 (134)
+..|+.++..|...- .+...|+.+|++++.+++.
T Consensus 26 ~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~ 65 (86)
T PF12711_consen 26 NEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQS 65 (86)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554332 2344566666666666553
No 232
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=21.63 E-value=2.6e+02 Score=18.76 Aligned_cols=44 Identities=14% Similarity=0.191 Sum_probs=24.1
Q ss_pred ccchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 17 QNRRAREKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHEL 60 (134)
Q Consensus 17 QNRR~k~K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~ 60 (134)
||+--+.+-..++.|...|+.....|+.+-..+..-+..|.+++
T Consensus 6 qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~ 49 (76)
T PF11544_consen 6 QNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQL 49 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666666555444444444444333
No 233
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=21.59 E-value=4.7e+02 Score=21.68 Aligned_cols=40 Identities=20% Similarity=0.471 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 28 IELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 28 ~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
.......++.+++....+..+|+.+.......+.++...+
T Consensus 247 l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li 286 (344)
T PF12777_consen 247 LEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLI 286 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHH
Confidence 3444555566666666666666666666666666655444
No 234
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=21.28 E-value=3.8e+02 Score=24.92 Aligned_cols=29 Identities=34% Similarity=0.478 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 37 QELDNVLAENRKLEQEVGMLKHELKKSQQ 65 (134)
Q Consensus 37 ~~~~~l~~en~~l~~e~~~L~~e~~~~~~ 65 (134)
...+.+..+...+..++++|+.|+.+.+.
T Consensus 45 t~~~~l~~~~~~~~~~i~~ltnel~k~r~ 73 (732)
T KOG0614|consen 45 TILEELIKEISKLEGEIAKLTNELDKLRS 73 (732)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhc
Confidence 34444555556677777777777776654
No 235
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=21.22 E-value=2.7e+02 Score=18.66 Aligned_cols=32 Identities=22% Similarity=0.404 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 29 ELDYKTIQQELDNVLAENRKLEQEVGMLKHEL 60 (134)
Q Consensus 29 ~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~ 60 (134)
..+...++.+++.+..+...++.+..-++.++
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 100 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALEAQI 100 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555554443
No 236
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=20.94 E-value=2e+02 Score=27.01 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047986 40 DNVLAENRKLEQEVGMLK 57 (134)
Q Consensus 40 ~~l~~en~~l~~e~~~L~ 57 (134)
+.++.|..+|..+..-|.
T Consensus 124 E~~Khei~rl~Ee~~~l~ 141 (717)
T PF09730_consen 124 EGLKHEIKRLEEEIELLN 141 (717)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333344444333333
No 237
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=20.87 E-value=3.2e+02 Score=19.44 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 29 ELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 29 ~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
..+...+......+..+-...+.++..|+.+|..++...
T Consensus 73 ~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r 111 (139)
T PF05615_consen 73 KRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVR 111 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555667777777777777665443
No 238
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=20.86 E-value=5.5e+02 Score=22.17 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047986 40 DNVLAENRKLEQEVGMLKHELK 61 (134)
Q Consensus 40 ~~l~~en~~l~~e~~~L~~e~~ 61 (134)
+..++--..|+.++...|.++.
T Consensus 193 e~qk~tv~~Leaev~~~K~~Y~ 214 (426)
T KOG2008|consen 193 EQQKKTVDDLEAEVTLAKGEYK 214 (426)
T ss_pred HHHHHHHHHHHHHHHHhhccHH
Confidence 3333334456666666555543
No 239
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=20.09 E-value=5.4e+02 Score=21.74 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 29 ELDYKTIQQELDNVLAENRKLEQEVGMLKHELK 61 (134)
Q Consensus 29 ~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~ 61 (134)
+.++..|+.+++..+.....|..++..|+....
T Consensus 33 ~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv 65 (310)
T PF09755_consen 33 QQENRVLKRELETEKARCKHLQEENRALREASV 65 (310)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333
Done!