Query 047986
Match_columns 134
No_of_seqs 188 out of 1212
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 08:33:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047986.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047986hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x2m_A LAG1 longevity assuranc 99.0 1.2E-11 4.1E-16 79.9 -2.9 26 1-26 34-59 (64)
2 2nzz_A Penetratin conjugated G 98.9 2.9E-11 9.9E-16 70.3 -2.0 22 10-31 1-22 (37)
3 3a01_A Homeodomain-containing 98.9 4.4E-11 1.5E-15 81.7 -1.8 39 1-39 50-88 (93)
4 3a03_A T-cell leukemia homeobo 98.9 5.1E-11 1.7E-15 74.0 -1.6 26 1-26 30-55 (56)
5 2l9r_A Homeobox protein NKX-3. 98.9 2E-11 6.8E-16 79.7 -4.1 30 1-30 37-66 (69)
6 2ecb_A Zinc fingers and homeob 98.9 5.7E-11 1.9E-15 81.1 -3.4 27 1-27 44-70 (89)
7 1uhs_A HOP, homeodomain only p 98.8 1.4E-10 4.7E-15 75.4 -1.6 28 1-28 35-62 (72)
8 2cue_A Paired box protein PAX6 98.8 1.9E-10 6.7E-15 76.1 -0.9 28 1-28 40-67 (80)
9 3a02_A Homeobox protein arista 98.8 1E-10 3.5E-15 73.4 -2.3 27 1-27 32-58 (60)
10 2cqx_A LAG1 longevity assuranc 98.8 1.1E-10 3.7E-15 76.4 -2.4 26 1-26 42-67 (72)
11 1puf_A HOX-1.7, homeobox prote 98.8 2.2E-10 7.6E-15 75.4 -1.1 29 1-29 46-74 (77)
12 1nk2_P Homeobox protein VND; h 98.8 1.5E-10 5.2E-15 76.2 -1.9 30 1-30 42-71 (77)
13 2vi6_A Homeobox protein nanog; 98.8 1.1E-10 3.8E-15 73.7 -2.5 27 1-27 36-62 (62)
14 2hi3_A Homeodomain-only protei 98.8 1.9E-10 6.5E-15 74.9 -1.5 28 1-28 36-63 (73)
15 2h1k_A IPF-1, pancreatic and d 98.8 1.7E-10 5.8E-15 73.1 -1.8 27 1-27 36-62 (63)
16 1ahd_P Antennapedia protein mu 98.8 2E-10 6.9E-15 74.0 -1.9 28 1-28 35-62 (68)
17 3nau_A Zinc fingers and homeob 98.8 2.5E-10 8.5E-15 74.1 -1.4 27 1-27 37-63 (66)
18 1yz8_P Pituitary homeobox 2; D 98.8 2.3E-10 7.8E-15 73.5 -1.7 29 1-29 36-64 (68)
19 1zq3_P PRD-4, homeotic bicoid 98.8 2.3E-10 8E-15 73.6 -1.8 29 1-29 35-63 (68)
20 2kt0_A Nanog, homeobox protein 98.8 1.3E-10 4.4E-15 77.4 -3.2 28 1-28 55-82 (84)
21 2hdd_A Protein (engrailed home 98.8 2.6E-10 8.7E-15 71.8 -1.9 25 1-25 36-60 (61)
22 2dmq_A LIM/homeobox protein LH 98.8 2.6E-10 8.7E-15 75.3 -2.0 28 1-28 40-67 (80)
23 1ig7_A Homeotic protein MSX-1; 98.8 3E-10 1E-14 70.6 -1.7 25 1-25 33-57 (58)
24 2dmt_A Homeobox protein BARH-l 98.8 1.6E-10 5.6E-15 76.5 -3.0 27 1-27 50-76 (80)
25 2da4_A Hypothetical protein DK 98.8 3E-10 1E-14 75.1 -2.0 27 1-27 45-71 (80)
26 2da5_A Zinc fingers and homeob 98.8 2.6E-10 8.8E-15 74.8 -2.3 28 1-28 40-67 (75)
27 1fjl_A Paired protein; DNA-bin 98.8 4.1E-10 1.4E-14 74.6 -1.3 28 1-28 51-78 (81)
28 1ftt_A TTF-1 HD, thyroid trans 98.8 2.7E-10 9.1E-15 73.3 -2.2 29 1-29 35-63 (68)
29 1b8i_A Ultrabithorax, protein 98.8 2.8E-10 9.5E-15 75.7 -2.2 27 1-27 53-79 (81)
30 2dmu_A Homeobox protein goosec 98.8 3.1E-10 1.1E-14 73.2 -1.9 28 1-28 40-67 (70)
31 2dms_A Homeobox protein OTX2; 98.8 3.2E-10 1.1E-14 75.0 -2.0 28 1-28 40-67 (80)
32 2cra_A Homeobox protein HOX-B1 98.8 1.9E-10 6.5E-15 74.3 -3.1 27 1-27 40-66 (70)
33 1jgg_A Segmentation protein EV 98.8 3.4E-10 1.2E-14 71.0 -2.0 26 1-26 34-59 (60)
34 2da3_A Alpha-fetoprotein enhan 98.8 2.8E-10 9.6E-15 74.9 -2.6 27 1-27 50-76 (80)
35 2e1o_A Homeobox protein PRH; D 98.7 4.3E-10 1.5E-14 72.6 -1.7 28 1-28 40-67 (70)
36 2ecc_A Homeobox and leucine zi 98.7 3.9E-10 1.3E-14 75.0 -1.9 27 1-27 36-62 (76)
37 2k40_A Homeobox expressed in E 98.7 1.8E-10 6.2E-15 73.7 -3.7 30 1-30 34-63 (67)
38 2da1_A Alpha-fetoprotein enhan 98.7 3E-10 1E-14 73.2 -2.7 28 1-28 40-67 (70)
39 2e19_A Transcription factor 8; 98.7 2.7E-10 9.2E-15 73.0 -3.0 25 1-25 36-60 (64)
40 2da2_A Alpha-fetoprotein enhan 98.7 2.8E-10 9.4E-15 73.4 -3.1 28 1-28 40-67 (70)
41 2l7z_A Homeobox protein HOX-A1 98.7 5.5E-10 1.9E-14 72.8 -1.7 28 1-28 40-67 (73)
42 2ly9_A Zinc fingers and homeob 98.7 3.9E-10 1.3E-14 73.4 -2.5 28 1-28 39-66 (74)
43 3rkq_A Homeobox protein NKX-2. 98.7 4.6E-10 1.6E-14 69.4 -2.2 24 1-24 35-58 (58)
44 2dmp_A Zinc fingers and homeob 98.7 5.2E-10 1.8E-14 75.8 -2.5 27 1-27 46-72 (89)
45 3nar_A ZHX1, zinc fingers and 98.7 8.9E-10 3E-14 75.4 -1.3 29 1-29 58-86 (96)
46 2dn0_A Zinc fingers and homeob 98.7 3.6E-10 1.2E-14 74.1 -3.4 28 1-28 41-68 (76)
47 2m0c_A Homeobox protein arista 98.7 4.5E-10 1.5E-14 73.0 -2.9 29 1-29 42-70 (75)
48 2djn_A Homeobox protein DLX-5; 98.7 3.6E-10 1.2E-14 73.0 -3.4 27 1-27 40-66 (70)
49 1wh5_A ZF-HD homeobox family p 98.7 3.8E-10 1.3E-14 75.2 -3.4 25 1-25 54-78 (80)
50 1wh7_A ZF-HD homeobox family p 98.7 4.5E-10 1.5E-14 75.0 -3.3 25 1-25 54-78 (80)
51 1k61_A Mating-type protein alp 98.7 7.3E-10 2.5E-14 69.3 -2.1 26 1-26 34-59 (60)
52 1bw5_A ISL-1HD, insulin gene e 98.7 4.2E-10 1.5E-14 71.8 -3.4 27 1-27 36-62 (66)
53 1puf_B PRE-B-cell leukemia tra 98.7 7.4E-10 2.5E-14 72.0 -2.3 30 1-30 37-66 (73)
54 1b72_B Protein (PBX1); homeodo 98.7 1.4E-09 4.9E-14 72.7 -1.0 28 1-28 37-64 (87)
55 1x2n_A Homeobox protein pknox1 98.6 1.1E-09 3.8E-14 71.1 -2.0 28 1-28 43-70 (73)
56 1le8_B Mating-type protein alp 98.6 8.1E-10 2.8E-14 73.7 -3.0 29 1-29 38-66 (83)
57 1akh_A Protein (mating-type pr 98.6 1E-09 3.5E-14 68.8 -2.4 24 1-24 38-61 (61)
58 3k2a_A Homeobox protein MEIS2; 98.6 1E-09 3.4E-14 70.7 -2.5 31 1-31 34-64 (67)
59 1du6_A PBX1, homeobox protein 98.6 6.8E-10 2.3E-14 70.3 -3.4 25 1-25 39-63 (64)
60 2dmn_A Homeobox protein TGIF2L 98.6 2.6E-09 8.9E-14 71.4 -1.9 28 1-28 43-70 (83)
61 2cuf_A FLJ21616 protein; homeo 98.5 6.1E-09 2.1E-13 71.0 -1.9 22 7-28 61-82 (95)
62 2lk2_A Homeobox protein TGIF1; 98.4 2.5E-08 8.5E-13 68.1 -1.0 27 1-27 41-67 (89)
63 1wi3_A DNA-binding protein SAT 98.3 3.8E-08 1.3E-12 64.4 -2.4 25 1-25 41-65 (71)
64 2da6_A Hepatocyte nuclear fact 98.2 8.3E-08 2.8E-12 67.0 -1.1 22 6-27 65-86 (102)
65 1lfb_A Liver transcription fac 98.2 4E-08 1.4E-12 68.0 -3.5 25 5-29 64-91 (99)
66 2da7_A Zinc finger homeobox pr 98.0 2.4E-07 8.2E-12 60.7 -2.1 22 1-22 38-59 (71)
67 2wt7_A Proto-oncogene protein 94.9 0.21 7.2E-06 31.1 7.8 44 26-69 19-62 (63)
68 1hjb_A Ccaat/enhancer binding 94.9 0.16 5.4E-06 34.0 7.6 47 20-69 29-75 (87)
69 1t2k_D Cyclic-AMP-dependent tr 94.6 0.25 8.6E-06 30.5 7.5 42 26-67 18-59 (61)
70 1ci6_A Transcription factor AT 94.2 0.32 1.1E-05 30.4 7.5 42 26-67 19-60 (63)
71 1gu4_A CAAT/enhancer binding p 93.9 0.16 5.6E-06 33.3 5.9 46 20-68 29-74 (78)
72 1jnm_A Proto-oncogene C-JUN; B 93.2 0.2 6.8E-06 31.1 5.2 42 26-67 18-59 (62)
73 2yy0_A C-MYC-binding protein; 90.4 0.5 1.7E-05 28.7 4.5 31 30-60 19-49 (53)
74 1hjb_A Ccaat/enhancer binding 90.1 0.82 2.8E-05 30.5 5.8 42 23-64 36-77 (87)
75 2yy0_A C-MYC-binding protein; 89.2 1 3.5E-05 27.2 5.3 31 37-67 19-49 (53)
76 1t2k_D Cyclic-AMP-dependent tr 88.6 1.9 6.6E-05 26.3 6.4 38 23-60 22-59 (61)
77 1gd2_E Transcription factor PA 88.5 1.7 5.8E-05 27.8 6.2 50 16-65 14-64 (70)
78 2oxj_A Hybrid alpha/beta pepti 88.4 1.2 4.2E-05 24.7 4.7 29 32-60 3-31 (34)
79 2dgc_A Protein (GCN4); basic d 88.1 1.3 4.5E-05 27.6 5.4 32 29-60 29-60 (63)
80 1kd8_B GABH BLL, GCN4 acid bas 87.2 2.3 7.9E-05 23.8 5.4 31 32-62 3-33 (36)
81 3m48_A General control protein 86.7 1 3.4E-05 24.9 3.6 26 34-59 4-29 (33)
82 1ci6_A Transcription factor AT 85.9 3 0.0001 25.8 6.1 36 25-60 25-60 (63)
83 3c3g_A Alpha/beta peptide with 85.8 2.1 7.3E-05 23.5 4.7 28 33-60 3-30 (33)
84 3c3f_A Alpha/beta peptide with 85.7 2.1 7.3E-05 23.6 4.7 29 32-60 3-31 (34)
85 1gu4_A CAAT/enhancer binding p 85.1 2.5 8.7E-05 27.5 5.7 27 42-68 41-67 (78)
86 1gd2_E Transcription factor PA 84.5 2.2 7.4E-05 27.3 5.1 38 25-62 31-68 (70)
87 2jee_A YIIU; FTSZ, septum, coi 84.4 6 0.00021 26.0 7.3 14 49-62 53-66 (81)
88 1kd8_A GABH AIV, GCN4 acid bas 83.5 2.1 7.3E-05 24.0 4.1 31 32-62 3-33 (36)
89 2wt7_A Proto-oncogene protein 83.5 5.4 0.00018 24.5 6.5 32 28-59 28-59 (63)
90 1go4_E MAD1 (mitotic arrest de 83.2 3.2 0.00011 28.4 5.8 34 29-62 11-44 (100)
91 1jnm_A Proto-oncogene C-JUN; B 81.4 2.3 8E-05 26.0 4.2 30 29-58 28-57 (62)
92 2jee_A YIIU; FTSZ, septum, coi 79.9 8.5 0.00029 25.3 6.7 41 27-67 17-64 (81)
93 2bni_A General control protein 79.8 3.1 0.00011 23.0 3.8 28 33-60 4-31 (34)
94 1uo4_A General control protein 77.6 3.9 0.00013 22.6 3.8 27 33-59 4-30 (34)
95 2hy6_A General control protein 76.6 5.9 0.0002 21.9 4.3 28 33-60 4-31 (34)
96 4dzn_A Coiled-coil peptide CC- 76.1 7.1 0.00024 20.9 4.5 28 31-58 3-30 (33)
97 1dh3_A Transcription factor CR 76.1 5.4 0.00018 24.0 4.6 28 37-64 22-49 (55)
98 3m9b_A Proteasome-associated A 75.1 4.4 0.00015 31.9 5.0 38 27-64 58-95 (251)
99 1dh3_A Transcription factor CR 73.8 12 0.00041 22.4 5.9 31 30-60 22-52 (55)
100 3s9g_A Protein hexim1; cyclin 73.6 7.3 0.00025 26.6 5.2 38 27-64 34-85 (104)
101 3m91_A Proteasome-associated A 73.4 12 0.00042 22.3 6.6 34 34-67 13-46 (51)
102 1a93_B MAX protein, coiled coi 73.3 6.1 0.00021 21.9 3.9 22 32-53 9-30 (34)
103 2wq1_A General control protein 72.8 9.6 0.00033 20.9 4.7 27 33-59 3-29 (33)
104 1fmh_A General control protein 72.4 9.1 0.00031 20.5 4.5 28 32-59 3-30 (33)
105 2wt7_B Transcription factor MA 72.1 12 0.00041 24.9 6.0 15 6-20 17-31 (90)
106 1nlw_A MAD protein, MAX dimeri 69.5 11 0.00039 24.2 5.3 27 34-60 51-77 (80)
107 3m91_A Proteasome-associated A 69.3 15 0.00053 21.9 6.5 41 23-63 9-49 (51)
108 2r2v_A GCN4 leucine zipper; co 68.4 13 0.00043 20.5 4.8 29 32-60 3-31 (34)
109 3he5_B Synzip2; heterodimeric 68.2 15 0.00053 21.4 6.3 38 31-68 11-48 (52)
110 2jn6_A Protein CGL2762, transp 67.3 0.053 1.8E-06 35.5 -6.6 17 1-17 29-45 (97)
111 1uii_A Geminin; human, DNA rep 67.3 24 0.00081 23.2 7.4 26 32-57 48-73 (83)
112 1uii_A Geminin; human, DNA rep 67.3 19 0.00064 23.7 6.0 28 38-65 47-74 (83)
113 3s4r_A Vimentin; alpha-helix, 67.1 18 0.00062 23.9 6.0 37 29-65 55-91 (93)
114 3w03_C DNA repair protein XRCC 66.8 22 0.00075 26.6 7.0 35 33-67 148-182 (184)
115 1t6f_A Geminin; coiled-coil, c 65.9 14 0.00048 20.6 4.3 26 38-63 8-33 (37)
116 3hnw_A Uncharacterized protein 64.8 31 0.0011 24.4 7.2 33 31-63 90-122 (138)
117 1nkp_B MAX protein, MYC proto- 63.1 24 0.00084 22.3 6.0 31 38-68 48-78 (83)
118 1wlq_A Geminin; coiled-coil; 2 62.9 26 0.00088 23.1 6.0 26 33-58 41-66 (83)
119 1t6f_A Geminin; coiled-coil, c 62.8 18 0.00061 20.2 4.8 27 31-57 8-34 (37)
120 1dip_A Delta-sleep-inducing pe 60.9 9.2 0.00031 24.8 3.4 30 29-58 14-43 (78)
121 1nkp_A C-MYC, MYC proto-oncoge 60.2 26 0.00088 22.8 5.7 28 35-62 57-84 (88)
122 1p9i_A Cortexillin I/GCN4 hybr 60.0 17 0.00059 19.1 3.8 24 35-58 4-27 (31)
123 1nkp_B MAX protein, MYC proto- 59.8 15 0.00051 23.3 4.4 32 31-62 48-79 (83)
124 2wuj_A Septum site-determining 58.8 12 0.0004 22.6 3.5 23 36-58 33-55 (57)
125 3hnw_A Uncharacterized protein 58.4 33 0.0011 24.2 6.4 28 35-62 101-128 (138)
126 3w03_C DNA repair protein XRCC 57.7 16 0.00054 27.4 4.8 36 32-67 140-175 (184)
127 2dgc_A Protein (GCN4); basic d 57.0 31 0.0011 21.1 6.3 33 35-67 28-60 (63)
128 3ra3_B P2F; coiled coil domain 57.0 11 0.00039 19.4 2.7 15 45-59 8-22 (28)
129 2zxx_A Geminin; coiled-coil, c 56.9 32 0.0011 22.3 5.6 21 38-58 42-62 (79)
130 2j5u_A MREC protein; bacterial 56.4 5.8 0.0002 30.7 2.3 35 34-68 23-60 (255)
131 3s9g_A Protein hexim1; cyclin 56.0 45 0.0015 22.7 6.9 24 38-61 66-89 (104)
132 3ol1_A Vimentin; structural ge 55.7 46 0.0016 22.7 7.0 40 26-65 65-104 (119)
133 1nlw_A MAD protein, MAX dimeri 55.5 24 0.00082 22.6 4.9 31 37-67 47-77 (80)
134 3swk_A Vimentin; cytoskeleton, 54.8 27 0.00093 22.6 5.1 40 25-64 44-83 (86)
135 2wt7_B Transcription factor MA 54.3 39 0.0013 22.4 5.8 8 49-56 67-74 (90)
136 4b4t_K 26S protease regulatory 53.4 27 0.00094 28.9 6.1 47 18-64 44-90 (428)
137 1nkp_A C-MYC, MYC proto-oncoge 52.3 29 0.001 22.5 5.0 32 37-68 52-83 (88)
138 2zxx_A Geminin; coiled-coil, c 51.9 42 0.0015 21.8 5.6 28 37-64 27-54 (79)
139 3ra3_A P1C; coiled coil domain 51.9 9.6 0.00033 19.7 1.9 22 40-61 3-24 (28)
140 1l8d_A DNA double-strand break 50.1 51 0.0017 21.6 7.2 11 78-88 47-57 (112)
141 2wvr_A Geminin; DNA replicatio 50.1 77 0.0026 24.1 7.6 36 29-64 114-149 (209)
142 3oja_A Leucine-rich immune mol 49.8 62 0.0021 26.3 7.7 31 35-65 440-470 (487)
143 3a2a_A Voltage-gated hydrogen 49.6 42 0.0014 20.4 6.3 41 29-69 10-50 (58)
144 3m9b_A Proteasome-associated A 48.6 23 0.00079 27.8 4.6 40 29-68 53-92 (251)
145 3oja_B Anopheles plasmodium-re 48.6 55 0.0019 27.2 7.2 6 55-60 569-574 (597)
146 3oja_A Leucine-rich immune mol 48.5 57 0.0019 26.6 7.2 41 28-68 426-466 (487)
147 3mq7_A Bone marrow stromal ant 48.4 61 0.0021 22.6 6.2 33 32-64 73-105 (121)
148 1deb_A APC protein, adenomatou 47.7 43 0.0015 20.1 6.3 22 34-55 7-28 (54)
149 1a93_A Coiled coil, LZ, MYC pr 47.4 34 0.0012 18.8 4.2 28 35-62 5-32 (34)
150 2wuj_A Septum site-determining 47.2 21 0.00071 21.4 3.3 33 33-65 23-55 (57)
151 1deb_A APC protein, adenomatou 44.4 50 0.0017 19.8 5.1 13 33-45 13-25 (54)
152 3iv1_A Tumor susceptibility ge 43.4 64 0.0022 20.8 7.4 47 18-64 13-59 (78)
153 2wvr_A Geminin; DNA replicatio 41.4 91 0.0031 23.7 6.8 30 38-67 116-145 (209)
154 2xdj_A Uncharacterized protein 40.6 72 0.0025 20.6 5.5 33 33-65 23-55 (83)
155 3kin_B Kinesin heavy chain; mo 40.6 52 0.0018 22.4 4.9 30 33-62 85-114 (117)
156 3q4f_C DNA repair protein XRCC 40.1 31 0.0011 25.9 3.9 22 38-59 162-183 (186)
157 1wlq_A Geminin; coiled-coil; 2 40.0 77 0.0026 20.7 7.0 29 37-65 38-66 (83)
158 3u06_A Protein claret segregat 39.5 60 0.002 26.8 6.0 36 26-61 6-41 (412)
159 3gpv_A Transcriptional regulat 38.9 31 0.0011 24.1 3.7 60 3-64 70-129 (148)
160 3nmd_A CGMP dependent protein 38.1 76 0.0026 20.2 5.0 19 49-67 45-63 (72)
161 3he5_B Synzip2; heterodimeric 37.3 61 0.0021 18.8 4.6 19 35-53 29-47 (52)
162 4emc_A Monopolin complex subun 36.1 92 0.0032 23.4 6.0 23 38-60 35-57 (190)
163 3q4f_C DNA repair protein XRCC 35.1 40 0.0014 25.3 3.8 25 40-64 157-181 (186)
164 1go4_E MAD1 (mitotic arrest de 35.0 96 0.0033 20.9 5.4 34 35-68 10-43 (100)
165 3ol1_A Vimentin; structural ge 34.9 1E+02 0.0036 20.8 6.5 32 31-62 21-52 (119)
166 4etp_A Kinesin-like protein KA 34.9 94 0.0032 25.4 6.5 35 27-61 7-41 (403)
167 4etp_A Kinesin-like protein KA 34.4 63 0.0022 26.5 5.4 44 24-67 11-54 (403)
168 3swk_A Vimentin; cytoskeleton, 34.0 91 0.0031 20.1 5.1 28 34-61 4-31 (86)
169 3u06_A Protein claret segregat 33.6 1.1E+02 0.0036 25.3 6.6 37 31-67 18-54 (412)
170 4h22_A Leucine-rich repeat fli 33.5 1.1E+02 0.0038 20.7 7.4 48 21-68 35-82 (103)
171 3oja_B Anopheles plasmodium-re 33.5 1.5E+02 0.005 24.5 7.6 21 47-67 554-574 (597)
172 2v66_B Nuclear distribution pr 33.0 1.2E+02 0.004 20.8 7.2 14 28-41 15-28 (111)
173 1am9_A Srebp-1A, protein (ster 32.8 92 0.0032 19.6 4.9 20 42-61 55-74 (82)
174 3oa7_A Head morphogenesis prot 32.8 1.3E+02 0.0045 22.8 6.4 39 26-64 33-71 (206)
175 3tnu_B Keratin, type II cytosk 32.1 1.2E+02 0.0041 20.6 6.4 8 12-19 9-16 (129)
176 1dip_A Delta-sleep-inducing pe 31.9 90 0.0031 20.1 4.6 36 32-67 10-45 (78)
177 2oqq_A Transcription factor HY 30.9 78 0.0027 18.1 6.1 33 35-67 8-40 (42)
178 1b72_A Protein (homeobox prote 30.7 12 0.00042 24.3 0.3 22 4-25 2-23 (97)
179 2wg5_A General control protein 30.5 71 0.0024 21.3 4.3 23 42-64 12-34 (109)
180 2w83_C C-JUN-amino-terminal ki 29.9 76 0.0026 20.5 4.0 15 48-62 41-55 (77)
181 1ik9_A DNA repair protein XRCC 29.7 1E+02 0.0035 23.2 5.5 26 36-61 138-163 (213)
182 3tnu_A Keratin, type I cytoske 29.0 1.1E+02 0.0038 20.9 5.2 9 11-19 10-18 (131)
183 2aze_B Transcription factor E2 28.5 1.3E+02 0.0046 20.0 5.9 34 31-64 7-40 (106)
184 4emc_A Monopolin complex subun 27.2 2E+02 0.0067 21.6 7.0 29 33-61 23-51 (190)
185 2w6a_A ARF GTPase-activating p 26.7 1.2E+02 0.004 18.7 6.5 21 40-60 37-57 (63)
186 1fqj_C Retinal ROD rhodopsin-s 26.1 15 0.00053 20.9 0.2 19 95-113 19-37 (42)
187 2kvr_A Ubiquitin carboxyl-term 25.9 16 0.00054 25.5 0.2 17 1-17 75-91 (130)
188 3viq_B Mating-type switching p 25.9 70 0.0024 21.0 3.4 22 35-56 6-27 (85)
189 2ve7_C Kinetochore protein NUF 24.9 49 0.0017 25.4 2.9 38 30-67 141-178 (250)
190 3sjb_C Golgi to ER traffic pro 24.5 1.6E+02 0.0055 19.6 6.4 20 48-67 53-72 (93)
191 1wm3_A Ubiquitin-like protein 23.5 26 0.00087 21.4 0.9 21 2-22 32-52 (72)
192 2wg5_A General control protein 23.5 87 0.003 20.9 3.6 23 35-57 12-34 (109)
193 3vlc_E Golgi to ER traffic pro 23.2 1.4E+02 0.0048 19.9 4.5 39 30-68 30-80 (94)
194 1jcd_A Major outer membrane li 22.7 1.3E+02 0.0044 17.8 7.2 43 25-67 6-48 (52)
195 3kyd_D Small ubiquitin-related 22.4 26 0.00088 24.1 0.8 22 2-23 71-92 (115)
196 4b4t_K 26S protease regulatory 22.3 1.9E+02 0.0063 23.8 6.1 40 29-68 48-87 (428)
197 3v86_A De novo design helix; c 21.8 91 0.0031 15.8 3.9 18 44-61 7-24 (27)
198 3sja_C Golgi to ER traffic pro 21.7 1.5E+02 0.0052 18.3 7.2 22 47-68 35-56 (65)
199 1wt6_A Myotonin-protein kinase 21.5 1.7E+02 0.0059 18.9 6.9 26 37-62 45-70 (81)
200 3viq_A SWI5-dependent recombin 20.9 1.5E+02 0.0053 20.4 4.6 7 34-40 18-24 (122)
201 2zvf_A Alanyl-tRNA synthetase; 20.4 1.9E+02 0.0064 20.0 5.1 30 34-63 29-58 (171)
202 1r8e_A Multidrug-efflux transp 20.2 1.8E+02 0.0061 21.4 5.2 54 3-64 60-113 (278)
203 1hlo_A Protein (transcription 20.2 88 0.003 19.5 3.0 14 49-62 62-75 (80)
No 1
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.98 E-value=1.2e-11 Score=79.87 Aligned_cols=26 Identities=35% Similarity=0.680 Sum_probs=24.0
Q ss_pred CcchhCCCCcccceecccchhhHHHH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIH 26 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~ 26 (134)
||.+|||+++||+|||||||+|+|..
T Consensus 34 LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 34 LSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred HHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 68999999999999999999999853
No 2
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.94 E-value=2.9e-11 Score=70.27 Aligned_cols=22 Identities=41% Similarity=0.702 Sum_probs=19.2
Q ss_pred cccceecccchhhHHHHhhHHH
Q 047986 10 RQIAVWYQNRRAREKIHTIELD 31 (134)
Q Consensus 10 ~qVkiWFQNRR~k~K~~~~~~~ 31 (134)
+||+|||||||+|||++..+..
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~ 22 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDA 22 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHT
T ss_pred CCceeccHHHHHHHHHHhHHHH
Confidence 6999999999999999876644
No 3
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=98.93 E-value=4.4e-11 Score=81.67 Aligned_cols=39 Identities=33% Similarity=0.444 Sum_probs=27.9
Q ss_pred CcchhCCCCcccceecccchhhHHHHhhHHHHHHHHHHH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTIELDYKTIQQEL 39 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~~~~~~~lk~~~ 39 (134)
||..+||+++||+|||||||+|+|+...+.+.....+.+
T Consensus 50 LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~~~~~~~ 88 (93)
T 3a01_A 50 LARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAAN 88 (93)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHHHHHHHTCC---------
T ss_pred HHHHhCCChhhcccccHhhhhhhhhhhHHHHHHHHHHHH
Confidence 588999999999999999999999988776655554433
No 4
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=98.92 E-value=5.1e-11 Score=74.00 Aligned_cols=26 Identities=35% Similarity=0.695 Sum_probs=24.4
Q ss_pred CcchhCCCCcccceecccchhhHHHH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIH 26 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~ 26 (134)
||..+||+++||++||||||+|+|++
T Consensus 30 LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 30 LAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 58899999999999999999999985
No 5
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.90 E-value=2e-11 Score=79.70 Aligned_cols=30 Identities=37% Similarity=0.690 Sum_probs=26.7
Q ss_pred CcchhCCCCcccceecccchhhHHHHhhHH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTIEL 30 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~~~ 30 (134)
||.++||+++||+|||||||+|+|++....
T Consensus 37 LA~~l~Lte~qVqvWFqNRRak~kr~~~~~ 66 (69)
T 2l9r_A 37 LAKNLKLTETQVKIWFQNRRYKTKRKQLSS 66 (69)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHSCCSSSSC
T ss_pred HHHHhCCChhheeecchhhhhhhhhhhhhh
Confidence 588999999999999999999999876543
No 6
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.85 E-value=5.7e-11 Score=81.14 Aligned_cols=27 Identities=19% Similarity=0.549 Sum_probs=24.9
Q ss_pred CcchhCCCCcccceecccchhhHHHHh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHT 27 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~ 27 (134)
||..|||+++||+|||||||+||+++.
T Consensus 44 LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 44 LRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhCcChHHCeecccccchHHHHHH
Confidence 688999999999999999999998854
No 7
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.85 E-value=1.4e-10 Score=75.36 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=25.6
Q ss_pred CcchhCCCCcccceecccchhhHHHHhh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTI 28 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~ 28 (134)
||.++||+++||++||||||+++|+...
T Consensus 35 LA~~l~l~~~qV~~WFqNRR~k~rk~~~ 62 (72)
T 1uhs_A 35 IAAEAGLTEEQTQKWFKQRLAEWRRSEG 62 (72)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHCcCHHHhhHHhHHHHHHHhhhcc
Confidence 6889999999999999999999998753
No 8
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.85 E-value=1.9e-10 Score=76.13 Aligned_cols=28 Identities=39% Similarity=0.745 Sum_probs=25.6
Q ss_pred CcchhCCCCcccceecccchhhHHHHhh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTI 28 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~ 28 (134)
||..+||+++||++||||||+|+|+..+
T Consensus 40 LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (80)
T 2cue_A 40 LAAKIDLPEARIQVWFSNRRAKWRREEK 67 (80)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHhhHHHHHHHHHHHHHhh
Confidence 6889999999999999999999998653
No 9
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=98.84 E-value=1e-10 Score=73.40 Aligned_cols=27 Identities=44% Similarity=0.817 Sum_probs=23.0
Q ss_pred CcchhCCCCcccceecccchhhHHHHh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHT 27 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~ 27 (134)
||.++||+++||++||||||+|+|+..
T Consensus 32 La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 32 LAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred HHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 588999999999999999999999865
No 10
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.83 E-value=1.1e-10 Score=76.41 Aligned_cols=26 Identities=31% Similarity=0.731 Sum_probs=24.2
Q ss_pred CcchhCCCCcccceecccchhhHHHH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIH 26 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~ 26 (134)
||.++||+++||+|||||||+|||+.
T Consensus 42 LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 42 LSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhCCChhhcchhhhhcccCCCCC
Confidence 58899999999999999999999864
No 11
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=98.83 E-value=2.2e-10 Score=75.35 Aligned_cols=29 Identities=41% Similarity=0.725 Sum_probs=26.2
Q ss_pred CcchhCCCCcccceecccchhhHHHHhhH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTIE 29 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~~ 29 (134)
||..+||+++||++||||||+++|+..+.
T Consensus 46 LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 46 VARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 58899999999999999999999987643
No 12
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=98.83 E-value=1.5e-10 Score=76.16 Aligned_cols=30 Identities=37% Similarity=0.623 Sum_probs=26.7
Q ss_pred CcchhCCCCcccceecccchhhHHHHhhHH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTIEL 30 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~~~ 30 (134)
||..+||+++||++||||||+|+|+.....
T Consensus 42 La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 42 LASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 688999999999999999999999876543
No 13
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=98.83 E-value=1.1e-10 Score=73.69 Aligned_cols=27 Identities=33% Similarity=0.585 Sum_probs=24.8
Q ss_pred CcchhCCCCcccceecccchhhHHHHh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHT 27 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~ 27 (134)
||..+||++++|++||||||+++|+.+
T Consensus 36 LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 36 LSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred HHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 588999999999999999999999853
No 14
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.83 E-value=1.9e-10 Score=74.94 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=25.6
Q ss_pred CcchhCCCCcccceecccchhhHHHHhh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTI 28 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~ 28 (134)
||..+||+++||++||||||+++|+...
T Consensus 36 LA~~~~l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 36 IAAEAGLTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHHHhcc
Confidence 6889999999999999999999998753
No 15
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=98.82 E-value=1.7e-10 Score=73.11 Aligned_cols=27 Identities=44% Similarity=0.711 Sum_probs=24.9
Q ss_pred CcchhCCCCcccceecccchhhHHHHh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHT 27 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~ 27 (134)
||..+||+++||++||||||+++|+..
T Consensus 36 LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 36 LAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 688999999999999999999999863
No 16
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=98.81 E-value=2e-10 Score=73.96 Aligned_cols=28 Identities=43% Similarity=0.716 Sum_probs=25.7
Q ss_pred CcchhCCCCcccceecccchhhHHHHhh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTI 28 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~ 28 (134)
||..+||+++||++||||||+++|+...
T Consensus 35 La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 35 IAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 5889999999999999999999998754
No 17
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=98.80 E-value=2.5e-10 Score=74.13 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=24.7
Q ss_pred CcchhCCCCcccceecccchhhHHHHh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHT 27 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~ 27 (134)
||..+||+++||++||||||++||+..
T Consensus 37 LA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 37 LIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcCHHHhhHhcccchhhhhccC
Confidence 688999999999999999999999753
No 18
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=98.80 E-value=2.3e-10 Score=73.54 Aligned_cols=29 Identities=28% Similarity=0.465 Sum_probs=26.2
Q ss_pred CcchhCCCCcccceecccchhhHHHHhhH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTIE 29 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~~ 29 (134)
||..+||+++||++||||||+++|+....
T Consensus 36 La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 36 IAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 58899999999999999999999987653
No 19
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=98.80 E-value=2.3e-10 Score=73.58 Aligned_cols=29 Identities=38% Similarity=0.786 Sum_probs=26.3
Q ss_pred CcchhCCCCcccceecccchhhHHHHhhH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTIE 29 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~~ 29 (134)
||..+||++++|++||||||+++|+....
T Consensus 35 La~~l~l~~~qV~~WFqNRR~k~kk~~~~ 63 (68)
T 1zq3_P 35 LSAKLALGTAQVKIWFKNRRRRHKIQSDQ 63 (68)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCcCHHHhhHhhHHHHHHHHHHhcc
Confidence 58899999999999999999999987654
No 20
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=98.79 E-value=1.3e-10 Score=77.40 Aligned_cols=28 Identities=32% Similarity=0.583 Sum_probs=25.6
Q ss_pred CcchhCCCCcccceecccchhhHHHHhh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTI 28 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~ 28 (134)
||..+||+++||+|||||||+|+|+..+
T Consensus 55 La~~l~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 55 LSNILNLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTTTSCCC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 6889999999999999999999998654
No 21
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=98.78 E-value=2.6e-10 Score=71.77 Aligned_cols=25 Identities=44% Similarity=0.837 Sum_probs=23.6
Q ss_pred CcchhCCCCcccceecccchhhHHH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKI 25 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~ 25 (134)
||..+||+++||++||||||+++|+
T Consensus 36 La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 36 LSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCcCHHHHHHHhhhhcccccc
Confidence 5889999999999999999999986
No 22
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=2.6e-10 Score=75.30 Aligned_cols=28 Identities=39% Similarity=0.746 Sum_probs=25.6
Q ss_pred CcchhCCCCcccceecccchhhHHHHhh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTI 28 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~ 28 (134)
||.++||+++||++||||||+|+|++..
T Consensus 40 La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 40 LAQKTGLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHhhHccHHHHHHHHHHHH
Confidence 6889999999999999999999998653
No 23
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=98.78 E-value=3e-10 Score=70.60 Aligned_cols=25 Identities=40% Similarity=0.801 Sum_probs=23.5
Q ss_pred CcchhCCCCcccceecccchhhHHH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKI 25 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~ 25 (134)
||..+||+++||++||||||+++|+
T Consensus 33 La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 33 FSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 5889999999999999999999986
No 24
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=1.6e-10 Score=76.51 Aligned_cols=27 Identities=48% Similarity=0.741 Sum_probs=25.1
Q ss_pred CcchhCCCCcccceecccchhhHHHHh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHT 27 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~ 27 (134)
||..+||+++||+|||||||+|+|+..
T Consensus 50 LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 50 LAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 688999999999999999999999864
No 25
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=3e-10 Score=75.13 Aligned_cols=27 Identities=22% Similarity=0.445 Sum_probs=24.9
Q ss_pred CcchhCCCCcccceecccchhhHHHHh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHT 27 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~ 27 (134)
||.++||+++||+|||||||+|+|+..
T Consensus 45 La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 45 VATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 588999999999999999999999854
No 26
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=2.6e-10 Score=74.84 Aligned_cols=28 Identities=21% Similarity=0.503 Sum_probs=25.7
Q ss_pred CcchhCCCCcccceecccchhhHHHHhh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTI 28 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~ 28 (134)
||..+||+++||++||||||+++|++..
T Consensus 40 LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 40 LRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp HHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred HHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 6889999999999999999999998754
No 27
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=98.77 E-value=4.1e-10 Score=74.63 Aligned_cols=28 Identities=46% Similarity=0.759 Sum_probs=25.6
Q ss_pred CcchhCCCCcccceecccchhhHHHHhh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTI 28 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~ 28 (134)
||..+||+++||++||||||+|+|++..
T Consensus 51 LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 51 LAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 6889999999999999999999998653
No 28
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=98.77 E-value=2.7e-10 Score=73.30 Aligned_cols=29 Identities=34% Similarity=0.675 Sum_probs=26.3
Q ss_pred CcchhCCCCcccceecccchhhHHHHhhH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTIE 29 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~~ 29 (134)
||..+||++++|++||||||+++|+..+.
T Consensus 35 LA~~l~l~~~qV~~WFqNRR~k~kr~~~~ 63 (68)
T 1ftt_A 35 LASMIHLTPTQVKIWFQNHRYKMKRQAKD 63 (68)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHhCCCHHHhHHHhHHHhhhhhhhhhH
Confidence 58899999999999999999999987653
No 29
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=98.77 E-value=2.8e-10 Score=75.69 Aligned_cols=27 Identities=44% Similarity=0.773 Sum_probs=25.1
Q ss_pred CcchhCCCCcccceecccchhhHHHHh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHT 27 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~ 27 (134)
||.++||+++||++||||||+|+|+..
T Consensus 53 LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 53 MAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 588999999999999999999999864
No 30
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=3.1e-10 Score=73.20 Aligned_cols=28 Identities=36% Similarity=0.672 Sum_probs=25.5
Q ss_pred CcchhCCCCcccceecccchhhHHHHhh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTI 28 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~ 28 (134)
||.++||+++||++||||||+++|+...
T Consensus 40 LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 40 LARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred HHHHHCCCHHHeehccccccccccccCC
Confidence 6889999999999999999999998653
No 31
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.76 E-value=3.2e-10 Score=74.98 Aligned_cols=28 Identities=32% Similarity=0.748 Sum_probs=25.6
Q ss_pred CcchhCCCCcccceecccchhhHHHHhh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTI 28 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~ 28 (134)
||..+||++++|++||||||+|+|++..
T Consensus 40 La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 40 VALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp HHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred HHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 6889999999999999999999998754
No 32
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.76 E-value=1.9e-10 Score=74.30 Aligned_cols=27 Identities=41% Similarity=0.768 Sum_probs=25.1
Q ss_pred CcchhCCCCcccceecccchhhHHHHh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHT 27 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~ 27 (134)
||.++||+++||++||||||+|+|+..
T Consensus 40 LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 40 ISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred HHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 688999999999999999999999865
No 33
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=98.75 E-value=3.4e-10 Score=70.96 Aligned_cols=26 Identities=50% Similarity=0.916 Sum_probs=24.3
Q ss_pred CcchhCCCCcccceecccchhhHHHH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIH 26 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~ 26 (134)
||..+||+++||++||||||+++|++
T Consensus 34 La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 34 LAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 58899999999999999999999875
No 34
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=98.75 E-value=2.8e-10 Score=74.91 Aligned_cols=27 Identities=44% Similarity=0.829 Sum_probs=25.1
Q ss_pred CcchhCCCCcccceecccchhhHHHHh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHT 27 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~ 27 (134)
||.++||+++||++||||||+|+|++.
T Consensus 50 La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 50 IAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 588999999999999999999999865
No 35
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.75 E-value=4.3e-10 Score=72.61 Aligned_cols=28 Identities=43% Similarity=0.677 Sum_probs=25.5
Q ss_pred CcchhCCCCcccceecccchhhHHHHhh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTI 28 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~ 28 (134)
||.++||+++||++||||||+++|+...
T Consensus 40 La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 40 LAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 6889999999999999999999998653
No 36
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.75 E-value=3.9e-10 Score=75.00 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=25.1
Q ss_pred CcchhCCCCcccceecccchhhHHHHh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHT 27 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~ 27 (134)
||..+||+++||++||||||+|+|+..
T Consensus 36 LA~~tgLte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 36 LEQITGLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHCcCHHHhhHHhHhhHHHHHHHH
Confidence 688999999999999999999999864
No 37
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=98.74 E-value=1.8e-10 Score=73.74 Aligned_cols=30 Identities=43% Similarity=0.680 Sum_probs=26.8
Q ss_pred CcchhCCCCcccceecccchhhHHHHhhHH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTIEL 30 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~~~ 30 (134)
||..+||+++||++||||||+++|+.....
T Consensus 34 La~~l~l~~~qV~~WFqNrR~k~kr~~~~~ 63 (67)
T 2k40_A 34 LAQKLNLELDRIQIWFQNRRAKLKRSHRES 63 (67)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHCSCCTT
T ss_pred HHHHHCcCHHHhhHhhHhHHHHHhHhchhc
Confidence 588999999999999999999999876543
No 38
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=98.74 E-value=3e-10 Score=73.18 Aligned_cols=28 Identities=29% Similarity=0.589 Sum_probs=25.5
Q ss_pred CcchhCCCCcccceecccchhhHHHHhh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTI 28 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~ 28 (134)
||..+||+++||++||||||+++|+..+
T Consensus 40 LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 40 MADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 5889999999999999999999998653
No 39
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=2.7e-10 Score=73.02 Aligned_cols=25 Identities=20% Similarity=0.484 Sum_probs=23.2
Q ss_pred CcchhCCCCcccceecccchhhHHH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKI 25 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~ 25 (134)
||.++||+++||+|||||||+|.++
T Consensus 36 LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 36 IADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred HHHHhCcChhhcCcchhcccCCCCC
Confidence 6889999999999999999998875
No 40
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=98.73 E-value=2.8e-10 Score=73.37 Aligned_cols=28 Identities=39% Similarity=0.704 Sum_probs=25.4
Q ss_pred CcchhCCCCcccceecccchhhHHHHhh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTI 28 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~ 28 (134)
||.++||+++||++||||||+++|+...
T Consensus 40 LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 40 LSNLLNLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHCCCSS
T ss_pred HHHHhCCCHHHhHHhhHhhhHHHhhccc
Confidence 5889999999999999999999998653
No 41
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=98.73 E-value=5.5e-10 Score=72.82 Aligned_cols=28 Identities=36% Similarity=0.686 Sum_probs=25.4
Q ss_pred CcchhCCCCcccceecccchhhHHHHhh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTI 28 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~ 28 (134)
||..+||+++||++||||||+++|+...
T Consensus 40 LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (73)
T 2l7z_A 40 ISATTNLSERQVTIWFQNRRVKEKKVIN 67 (73)
T ss_dssp HHHHHTSCSHHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHCCCHHHHHHHHHHHhHHHHHHhc
Confidence 5889999999999999999999998653
No 42
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.73 E-value=3.9e-10 Score=73.38 Aligned_cols=28 Identities=21% Similarity=0.465 Sum_probs=25.6
Q ss_pred CcchhCCCCcccceecccchhhHHHHhh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTI 28 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~ 28 (134)
||.++||+++||++||||||+++|+...
T Consensus 39 La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 39 LMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred HHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 5889999999999999999999998654
No 43
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=98.72 E-value=4.6e-10 Score=69.38 Aligned_cols=24 Identities=46% Similarity=0.819 Sum_probs=22.4
Q ss_pred CcchhCCCCcccceecccchhhHH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREK 24 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K 24 (134)
||..+||+++||++||||||+|+|
T Consensus 35 La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 35 LASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHhCcCHHHHHHhhHHhhccCC
Confidence 588999999999999999999986
No 44
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=5.2e-10 Score=75.82 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=24.9
Q ss_pred CcchhCCCCcccceecccchhhHHHHh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHT 27 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~ 27 (134)
||.++||+++||+|||||||+|+|+..
T Consensus 46 La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 46 LRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 688999999999999999999998865
No 45
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=98.70 E-value=8.9e-10 Score=75.39 Aligned_cols=29 Identities=28% Similarity=0.491 Sum_probs=26.1
Q ss_pred CcchhCCCCcccceecccchhhHHHHhhH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTIE 29 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~~ 29 (134)
||.++||+++||++||||||+|+|+.+.+
T Consensus 58 LA~~l~L~~~qV~vWFqNRR~k~kk~~lk 86 (96)
T 3nar_A 58 LAKESGLARTDIVSWFGDTRYAWKNGNLK 86 (96)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTTTCCH
T ss_pred HHHHhCCCHHHeeecchhhhhHhhhhccc
Confidence 68899999999999999999999997643
No 46
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=3.6e-10 Score=74.15 Aligned_cols=28 Identities=25% Similarity=0.506 Sum_probs=25.6
Q ss_pred CcchhCCCCcccceecccchhhHHHHhh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTI 28 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~ 28 (134)
||.++||+++||++||||||+++|+...
T Consensus 41 La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 41 LTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred HHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 6889999999999999999999998654
No 47
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.69 E-value=4.5e-10 Score=72.98 Aligned_cols=29 Identities=38% Similarity=0.573 Sum_probs=26.0
Q ss_pred CcchhCCCCcccceecccchhhHHHHhhH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTIE 29 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~~ 29 (134)
||..+||++++|++||||||+++|++...
T Consensus 42 La~~l~l~~~qV~~WFqNrR~k~kk~~r~ 70 (75)
T 2m0c_A 42 LAMRTDLTEARVQVWFQNRRAKWRKRERF 70 (75)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHhCCCHHHHHHHhHHHHHHHHHHHhh
Confidence 58899999999999999999999987543
No 48
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.69 E-value=3.6e-10 Score=73.01 Aligned_cols=27 Identities=41% Similarity=0.772 Sum_probs=24.9
Q ss_pred CcchhCCCCcccceecccchhhHHHHh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHT 27 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~ 27 (134)
||..+||+++||++||||||+++|+..
T Consensus 40 La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 40 LAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred HHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 688999999999999999999999864
No 49
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=98.69 E-value=3.8e-10 Score=75.22 Aligned_cols=25 Identities=20% Similarity=0.561 Sum_probs=23.3
Q ss_pred CcchhCCCCcccceecccchhhHHH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKI 25 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~ 25 (134)
||..|||+++||+|||||||+|+|.
T Consensus 54 La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 54 FCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp HHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred HHHHhCCCcccccCCccccCcCCCC
Confidence 5889999999999999999999875
No 50
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=98.68 E-value=4.5e-10 Score=75.02 Aligned_cols=25 Identities=12% Similarity=0.420 Sum_probs=23.2
Q ss_pred CcchhCCCCcccceecccchhhHHH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKI 25 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~ 25 (134)
||.+|||+++||+|||||||+|+|+
T Consensus 54 La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 54 FCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp HHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred HHHHhCcCcCcccccccccccCCCC
Confidence 5889999999999999999999875
No 51
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=98.68 E-value=7.3e-10 Score=69.34 Aligned_cols=26 Identities=38% Similarity=0.555 Sum_probs=24.0
Q ss_pred CcchhCCCCcccceecccchhhHHHH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIH 26 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~ 26 (134)
||.++||+++||++||||||+|+|+.
T Consensus 34 La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 34 LMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHCcCHHHHHHHHHHHHcccccC
Confidence 58899999999999999999999863
No 52
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=98.68 E-value=4.2e-10 Score=71.79 Aligned_cols=27 Identities=44% Similarity=0.893 Sum_probs=24.9
Q ss_pred CcchhCCCCcccceecccchhhHHHHh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHT 27 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~ 27 (134)
||..+||+++||++||||||+++|++.
T Consensus 36 La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 36 LVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 588999999999999999999999864
No 53
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=98.68 E-value=7.4e-10 Score=71.95 Aligned_cols=30 Identities=30% Similarity=0.596 Sum_probs=26.8
Q ss_pred CcchhCCCCcccceecccchhhHHHHhhHH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTIEL 30 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~~~ 30 (134)
||..+||++.||++||||||+|+|+.....
T Consensus 37 La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 37 LAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 588999999999999999999999876554
No 54
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=98.67 E-value=1.4e-09 Score=72.70 Aligned_cols=28 Identities=32% Similarity=0.600 Sum_probs=25.6
Q ss_pred CcchhCCCCcccceecccchhhHHHHhh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTI 28 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~ 28 (134)
||.++||+++||++||||||+|+|+...
T Consensus 37 La~~~~l~~~qV~~WFqNrR~r~kk~~~ 64 (87)
T 1b72_B 37 LAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (87)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHCcCHHHHHHHHHHHHHHhhhccc
Confidence 5889999999999999999999998753
No 55
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.65 E-value=1.1e-09 Score=71.11 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=25.5
Q ss_pred CcchhCCCCcccceecccchhhHHHHhh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTI 28 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~ 28 (134)
||.++||+++||++||||||+|+|+...
T Consensus 43 La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 43 IAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 5889999999999999999999998654
No 56
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=98.64 E-value=8.1e-10 Score=73.73 Aligned_cols=29 Identities=41% Similarity=0.555 Sum_probs=26.0
Q ss_pred CcchhCCCCcccceecccchhhHHHHhhH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTIE 29 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~~ 29 (134)
||..+||+++||++||||||+|+|+....
T Consensus 38 La~~~gLt~~qV~~WFqNrR~r~kk~~~~ 66 (83)
T 1le8_B 38 LMKNTSLSRIQIKNWVAARRAKEKTITIA 66 (83)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHCCCHHHcccccHHHHccccccccC
Confidence 58899999999999999999999987543
No 57
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=98.64 E-value=1e-09 Score=68.78 Aligned_cols=24 Identities=42% Similarity=0.938 Sum_probs=21.9
Q ss_pred CcchhCCCCcccceecccchhhHH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREK 24 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K 24 (134)
||..+||++.||++||||||+++|
T Consensus 38 La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 38 VAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHCcCHHHHHHHHHHHHhccC
Confidence 688999999999999999999986
No 58
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=98.63 E-value=1e-09 Score=70.73 Aligned_cols=31 Identities=32% Similarity=0.458 Sum_probs=25.3
Q ss_pred CcchhCCCCcccceecccchhhHHHHhhHHH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTIELD 31 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~~~~ 31 (134)
||.++||+++||++||||||+|+|+...+..
T Consensus 34 La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 64 (67)
T 3k2a_A 34 LAQDTGLTILQVNNWFINARRRIVQPMIDQS 64 (67)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHSCC----
T ss_pred HHHHhCcCHHHhhhhhHHHHHHHhHHHHHHh
Confidence 5889999999999999999999998765544
No 59
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.63 E-value=6.8e-10 Score=70.33 Aligned_cols=25 Identities=36% Similarity=0.724 Sum_probs=23.5
Q ss_pred CcchhCCCCcccceecccchhhHHH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKI 25 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~ 25 (134)
||..+||++.||++||||||+|+|+
T Consensus 39 La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 39 LAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp HHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred HHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 5889999999999999999999986
No 60
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=98.58 E-value=2.6e-09 Score=71.39 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=25.2
Q ss_pred CcchhCCCCcccceecccchhhHHHHhh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHTI 28 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~~ 28 (134)
||.++||+++||++||||||+|+|+...
T Consensus 43 LA~~~gLs~~qV~~WFqNrR~r~k~~~~ 70 (83)
T 2dmn_A 43 LSEKTNLSLLQISNWFINARRRILPDML 70 (83)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHCcCHHHhhHHhhhhHhhhcHHHH
Confidence 6889999999999999999999987643
No 61
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.49 E-value=6.1e-09 Score=70.98 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=20.3
Q ss_pred CCCcccceecccchhhHHHHhh
Q 047986 7 LPPRQIAVWYQNRRAREKIHTI 28 (134)
Q Consensus 7 L~e~qVkiWFQNRR~k~K~~~~ 28 (134)
|++.+|++||||||+++|++..
T Consensus 61 ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 61 VTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998653
No 62
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=98.38 E-value=2.5e-08 Score=68.10 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=24.5
Q ss_pred CcchhCCCCcccceecccchhhHHHHh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKIHT 27 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~~~ 27 (134)
||.++||+++||++||+|+|.|+++..
T Consensus 41 LA~~tgLt~~QV~~WF~NrR~R~kk~~ 67 (89)
T 2lk2_A 41 LSQQTHLSTLQVCNWFINARRRLLPDM 67 (89)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHhhhHH
Confidence 688999999999999999999998753
No 63
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.25 E-value=3.8e-08 Score=64.38 Aligned_cols=25 Identities=36% Similarity=0.562 Sum_probs=22.1
Q ss_pred CcchhCCCCcccceecccchhhHHH
Q 047986 1 LARRLGLPPRQIAVWYQNRRAREKI 25 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k~K~ 25 (134)
||.++||++++|+|||||||.-.|.
T Consensus 41 La~~tGL~~~~IqVWFQNrR~~~~~ 65 (71)
T 1wi3_A 41 LSAQLDLPKHTIIKFFQNQRYHVKH 65 (71)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHhCCCHHHHHHhhccceeeecC
Confidence 6889999999999999999986553
No 64
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=8.3e-08 Score=67.01 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=20.0
Q ss_pred CCCCcccceecccchhhHHHHh
Q 047986 6 GLPPRQIAVWYQNRRAREKIHT 27 (134)
Q Consensus 6 ~L~e~qVkiWFQNRR~k~K~~~ 27 (134)
+|++.+|++||||||+++|++.
T Consensus 65 ~lte~~V~~WFqNRR~k~kr~~ 86 (102)
T 2da6_A 65 LVTEVRVYNWFANRRKEEAFRQ 86 (102)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccceeeeecchHHHHHHhh
Confidence 6899999999999999998864
No 65
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=98.19 E-value=4e-08 Score=68.03 Aligned_cols=25 Identities=28% Similarity=0.562 Sum_probs=21.5
Q ss_pred hC---CCCcccceecccchhhHHHHhhH
Q 047986 5 LG---LPPRQIAVWYQNRRAREKIHTIE 29 (134)
Q Consensus 5 l~---L~e~qVkiWFQNRR~k~K~~~~~ 29 (134)
|| |++.+|++||||||+++|++.+.
T Consensus 64 lg~~~lse~qV~vWFqNRR~k~k~k~~~ 91 (99)
T 1lfb_A 64 LGSNLVTEVRVYNWFANRRKEEAFRHKL 91 (99)
T ss_dssp TGGGCCCHHHHHHHHHHHHHTTSCCC--
T ss_pred cCccccCcceeeeccHHHHHHHHHhchh
Confidence 88 99999999999999999887643
No 66
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=2.4e-07 Score=60.72 Aligned_cols=22 Identities=23% Similarity=0.708 Sum_probs=20.2
Q ss_pred CcchhCCCCcccceecccchhh
Q 047986 1 LARRLGLPPRQIAVWYQNRRAR 22 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQNRR~k 22 (134)
||..+||+.+.|+|||||||++
T Consensus 38 LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 38 ISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999974
No 67
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=94.87 E-value=0.21 Score=31.11 Aligned_cols=44 Identities=27% Similarity=0.249 Sum_probs=36.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047986 26 HTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQMLLA 69 (134)
Q Consensus 26 ~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l~~ 69 (134)
+.+......|..+.+.|..+|..|+.++..|..++..+..++..
T Consensus 19 ~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~ 62 (63)
T 2wt7_A 19 NRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAA 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456677788899999999999999999999999998887753
No 68
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=94.86 E-value=0.16 Score=34.04 Aligned_cols=47 Identities=23% Similarity=0.366 Sum_probs=36.7
Q ss_pred hhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047986 20 RAREKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQMLLA 69 (134)
Q Consensus 20 R~k~K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l~~ 69 (134)
|+|.|++. ....+....+.|..||..|+.++..|+.|+..+..++..
T Consensus 29 rSR~krk~---r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 29 KSRDKAKM---RNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44544443 344556778889999999999999999999999988863
No 69
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=94.55 E-value=0.25 Score=30.45 Aligned_cols=42 Identities=19% Similarity=0.396 Sum_probs=35.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 26 HTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 26 ~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
+.+......+..+.+.|..+|..|+.++..|+.++..+.+++
T Consensus 18 ~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 18 QKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556777888899999999999999999999999888776
No 70
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=94.23 E-value=0.32 Score=30.38 Aligned_cols=42 Identities=12% Similarity=0.256 Sum_probs=34.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 26 HTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 26 ~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
+++......+..+.+.|..+|..|+.++..|..|+..+.+.+
T Consensus 19 ~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 19 QKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777888899999999999999999999998887765
No 71
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=93.92 E-value=0.16 Score=33.29 Aligned_cols=46 Identities=24% Similarity=0.375 Sum_probs=35.0
Q ss_pred hhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 20 RAREKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQMLL 68 (134)
Q Consensus 20 R~k~K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l~ 68 (134)
|++.|++. ....+....+.|..||..|+.++..|..|+..+..++.
T Consensus 29 rSR~krk~---r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 29 KSRDKAKM---RNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44554444 34445667888999999999999999999999887664
No 72
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=93.25 E-value=0.2 Score=31.07 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=31.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 26 HTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 26 ~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
..+......|..+.+.|..+|..|..++..|..++..+.+++
T Consensus 18 ~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 18 KRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677888888899999999999999998888776655
No 73
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=90.41 E-value=0.5 Score=28.69 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 30 LDYKTIQQELDNVLAENRKLEQEVGMLKHEL 60 (134)
Q Consensus 30 ~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~ 60 (134)
.++..|+++++.|+.+...|..+++.|+.++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555443
No 74
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=90.14 E-value=0.82 Score=30.50 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=21.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 23 EKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 23 ~K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
.+......+...|..++..|..+...|+.|+..|+.-+.++.
T Consensus 36 ~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p 77 (87)
T 1hjb_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP 77 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 333444455555555555555555555555555555444433
No 75
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=89.18 E-value=1 Score=27.25 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 37 QELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 37 ~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
.+.++|+.|+..|+.++..|+.++..+...+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999888766
No 76
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=88.56 E-value=1.9 Score=26.29 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=25.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 23 EKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHEL 60 (134)
Q Consensus 23 ~K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~ 60 (134)
.+....+.+...+..++..|..+...|+.++..|+..+
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555666677777777777777777777776543
No 77
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=88.49 E-value=1.7 Score=27.77 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=23.4
Q ss_pred cccchhhHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 16 YQNRRAREK-IHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQ 65 (134)
Q Consensus 16 FQNRR~k~K-~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~ 65 (134)
.|||-+.-. +..++..+..|......+..++..+..++..|++++..+..
T Consensus 14 ~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~ 64 (70)
T 1gd2_E 14 AQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEE 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355533322 22333344445555555555555555555555555554443
No 78
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=88.36 E-value=1.2 Score=24.65 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 32 YKTIQQELDNVLAENRKLEQEVGMLKHEL 60 (134)
Q Consensus 32 ~~~lk~~~~~l~~en~~l~~e~~~L~~e~ 60 (134)
+..|....+.|..+|..|+.+|.+|++-+
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45566778889999999999999998743
No 79
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=88.14 E-value=1.3 Score=27.59 Aligned_cols=32 Identities=28% Similarity=0.438 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 29 ELDYKTIQQELDNVLAENRKLEQEVGMLKHEL 60 (134)
Q Consensus 29 ~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~ 60 (134)
......|..+.+.|..+|..|..++..|++++
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666777777777777777776654
No 80
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=87.16 E-value=2.3 Score=23.84 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 32 YKTIQQELDNVLAENRKLEQEVGMLKHELKK 62 (134)
Q Consensus 32 ~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~ 62 (134)
+..|....+.|..++..|+.+|.+|+.-+..
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 4567778888999999999999999976543
No 81
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=86.67 E-value=1 Score=24.90 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 34 TIQQELDNVLAENRKLEQEVGMLKHE 59 (134)
Q Consensus 34 ~lk~~~~~l~~en~~l~~e~~~L~~e 59 (134)
.|..+.+.|..+|..|+.||.+|++-
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45667788999999999999999863
No 82
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=85.86 E-value=3 Score=25.81 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=27.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 25 IHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHEL 60 (134)
Q Consensus 25 ~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~ 60 (134)
......+...|..+++.|..+...|+.|+..|+.-+
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455667788888888888888888888888654
No 83
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=85.77 E-value=2.1 Score=23.52 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 33 KTIQQELDNVLAENRKLEQEVGMLKHEL 60 (134)
Q Consensus 33 ~~lk~~~~~l~~en~~l~~e~~~L~~e~ 60 (134)
..+..+.+.|..+|..|+.|+.+|++-+
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4566678889999999999999998744
No 84
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=85.70 E-value=2.1 Score=23.65 Aligned_cols=29 Identities=21% Similarity=0.316 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 32 YKTIQQELDNVLAENRKLEQEVGMLKHEL 60 (134)
Q Consensus 32 ~~~lk~~~~~l~~en~~l~~e~~~L~~e~ 60 (134)
+..+..+.+.|..+|..|+.||.+|+.-+
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45566778889999999999999998743
No 85
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=85.12 E-value=2.5 Score=27.48 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 42 VLAENRKLEQEVGMLKHELKKSQQMLL 68 (134)
Q Consensus 42 l~~en~~l~~e~~~L~~e~~~~~~~l~ 68 (134)
+......|..++..|+.++..+...+.
T Consensus 41 ~~~r~~~L~~eN~~L~~~v~~L~~E~~ 67 (78)
T 1gu4_A 41 TQHKVLELTAENERLQKKVEQLSRELS 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445677777777777776665553
No 86
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=84.50 E-value=2.2 Score=27.28 Aligned_cols=38 Identities=26% Similarity=0.370 Sum_probs=29.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 25 IHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKK 62 (134)
Q Consensus 25 ~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~ 62 (134)
.+..+.....+...+..+..||..|+.++..|..|+..
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667778888888888888899998888888764
No 87
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=84.38 E-value=6 Score=25.99 Aligned_cols=14 Identities=36% Similarity=0.406 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q 047986 49 LEQEVGMLKHELKK 62 (134)
Q Consensus 49 l~~e~~~L~~e~~~ 62 (134)
|+.++.+|+++...
T Consensus 53 L~~en~qLk~E~~~ 66 (81)
T 2jee_A 53 LERENNHLKEQQNG 66 (81)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555443
No 88
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=83.48 E-value=2.1 Score=23.96 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 32 YKTIQQELDNVLAENRKLEQEVGMLKHELKK 62 (134)
Q Consensus 32 ~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~ 62 (134)
+..|..+.+.|..++..|+.||.+|+..+..
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 3456677788999999999999999986653
No 89
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=83.47 E-value=5.4 Score=24.48 Aligned_cols=32 Identities=16% Similarity=0.193 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 28 IELDYKTIQQELDNVLAENRKLEQEVGMLKHE 59 (134)
Q Consensus 28 ~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e 59 (134)
.+.+...|..++..|..+...|+.++..|+..
T Consensus 28 Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 28 LQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555543
No 90
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=83.23 E-value=3.2 Score=28.35 Aligned_cols=34 Identities=24% Similarity=0.440 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 29 ELDYKTIQQELDNVLAENRKLEQEVGMLKHELKK 62 (134)
Q Consensus 29 ~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~ 62 (134)
..++..++.+++.|..|+.+|+.++..|..++.+
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478889999999999999999999999888865
No 91
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=81.45 E-value=2.3 Score=26.03 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 29 ELDYKTIQQELDNVLAENRKLEQEVGMLKH 58 (134)
Q Consensus 29 ~~~~~~lk~~~~~l~~en~~l~~e~~~L~~ 58 (134)
+.+...|..+++.|..+...|+.++..|+.
T Consensus 28 e~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 28 EEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 92
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=79.88 E-value=8.5 Score=25.25 Aligned_cols=41 Identities=22% Similarity=0.223 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q 047986 27 TIELDYKTIQQELDNVLAENRKLEQEVGM-------LKHELKKSQQML 67 (134)
Q Consensus 27 ~~~~~~~~lk~~~~~l~~en~~l~~e~~~-------L~~e~~~~~~~l 67 (134)
..-..+..++-+.+.|+++|..|..++.. |..++.++++..
T Consensus 17 ~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~ 64 (81)
T 2jee_A 17 QAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33344445555666666666665555555 777777777554
No 93
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=79.83 E-value=3.1 Score=23.05 Aligned_cols=28 Identities=25% Similarity=0.502 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 33 KTIQQELDNVLAENRKLEQEVGMLKHEL 60 (134)
Q Consensus 33 ~~lk~~~~~l~~en~~l~~e~~~L~~e~ 60 (134)
..+..+.+.|..++..|+.|+.+|++-+
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 4566677889999999999999998643
No 94
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=77.61 E-value=3.9 Score=22.61 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 33 KTIQQELDNVLAENRKLEQEVGMLKHE 59 (134)
Q Consensus 33 ~~lk~~~~~l~~en~~l~~e~~~L~~e 59 (134)
..+..+.+.|..+|..|+.|+.+|+.-
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345567788889999999999999863
No 95
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=76.62 E-value=5.9 Score=21.89 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 33 KTIQQELDNVLAENRKLEQEVGMLKHEL 60 (134)
Q Consensus 33 ~~lk~~~~~l~~en~~l~~e~~~L~~e~ 60 (134)
..|....+.|..+|..|+.+|.+|+.-+
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3455667888899999999999998644
No 96
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=76.11 E-value=7.1 Score=20.92 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 31 DYKTIQQELDNVLAENRKLEQEVGMLKH 58 (134)
Q Consensus 31 ~~~~lk~~~~~l~~en~~l~~e~~~L~~ 58 (134)
+...++++...|+.|...|+-|...|++
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566677777666666666666655553
No 97
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=76.08 E-value=5.4 Score=24.02 Aligned_cols=28 Identities=21% Similarity=0.180 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 37 QELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 37 ~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
.+.+.|..+...|+.++..|..++..++
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555544
No 98
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=75.09 E-value=4.4 Score=31.92 Aligned_cols=38 Identities=11% Similarity=0.226 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 27 TIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 27 ~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
....+...+...++.|.++...++.|+.+|++|++++.
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455556666666667777777777777777777655
No 99
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=73.83 E-value=12 Score=22.43 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 30 LDYKTIQQELDNVLAENRKLEQEVGMLKHEL 60 (134)
Q Consensus 30 ~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~ 60 (134)
.....|......|..||..|..++..|++++
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566677778888899999999888887654
No 100
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=73.61 E-value=7.3 Score=26.63 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
Q 047986 27 TIELDYKTIQQELDNVLAENRK--------------LEQEVGMLKHELKKSQ 64 (134)
Q Consensus 27 ~~~~~~~~lk~~~~~l~~en~~--------------l~~e~~~L~~e~~~~~ 64 (134)
..-.+|..|..+++.+.+|+.+ |..++.+|+.|++.+.
T Consensus 34 ELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 34 ELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666555543 4445555565555544
No 101
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=73.41 E-value=12 Score=22.34 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 34 TIQQELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 34 ~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
.++..+..|...|.+|..-....++++..+...+
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555554444433
No 102
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=73.33 E-value=6.1 Score=21.88 Aligned_cols=22 Identities=41% Similarity=0.524 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047986 32 YKTIQQELDNVLAENRKLEQEV 53 (134)
Q Consensus 32 ~~~lk~~~~~l~~en~~l~~e~ 53 (134)
....++.++.++++|..|+.++
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHHH
Confidence 3444455555555555554444
No 103
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=72.80 E-value=9.6 Score=20.88 Aligned_cols=27 Identities=7% Similarity=0.113 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 33 KTIQQELDNVLAENRKLEQEVGMLKHE 59 (134)
Q Consensus 33 ~~lk~~~~~l~~en~~l~~e~~~L~~e 59 (134)
..|..+.+.|..++..|+.|+.+|+.-
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 456667788888889999999988863
No 104
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=72.43 E-value=9.1 Score=20.48 Aligned_cols=28 Identities=43% Similarity=0.580 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 32 YKTIQQELDNVLAENRKLEQEVGMLKHE 59 (134)
Q Consensus 32 ~~~lk~~~~~l~~en~~l~~e~~~L~~e 59 (134)
...+..+......||-+|++++.+|..+
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 3445556666677777888888877654
No 105
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=72.13 E-value=12 Score=24.93 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=9.7
Q ss_pred CCCCcccceecccch
Q 047986 6 GLPPRQIAVWYQNRR 20 (134)
Q Consensus 6 ~L~e~qVkiWFQNRR 20 (134)
||+..+|.-+=|-||
T Consensus 17 gls~eev~~lKq~RR 31 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRR 31 (90)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 677777776665554
No 106
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=69.51 E-value=11 Score=24.18 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 34 TIQQELDNVLAENRKLEQEVGMLKHEL 60 (134)
Q Consensus 34 ~lk~~~~~l~~en~~l~~e~~~L~~e~ 60 (134)
.|+.+...+..+.+.|+.++..|+.++
T Consensus 51 ~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 51 KLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555444
No 107
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=69.34 E-value=15 Score=21.86 Aligned_cols=41 Identities=15% Similarity=0.306 Sum_probs=32.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 23 EKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKS 63 (134)
Q Consensus 23 ~K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~ 63 (134)
.+......+...+...|+.|.+.-..-+.+...|++++.++
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344566778888888888888888888888888888775
No 108
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=68.42 E-value=13 Score=20.52 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 32 YKTIQQELDNVLAENRKLEQEVGMLKHEL 60 (134)
Q Consensus 32 ~~~lk~~~~~l~~en~~l~~e~~~L~~e~ 60 (134)
+..+..+.+.|..++..|..|+.+|+.-+
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 34556677888889999999999988644
No 109
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=68.22 E-value=15 Score=21.42 Aligned_cols=38 Identities=11% Similarity=0.249 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 31 DYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQMLL 68 (134)
Q Consensus 31 ~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l~ 68 (134)
....++..+-.|....+.|++-.+.|++|+.++.....
T Consensus 11 kiarlkkdnlqlerdeqnlekiianlrdeiarleneva 48 (52)
T 3he5_B 11 KIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555556666777888888888887776553
No 110
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=67.31 E-value=0.053 Score=35.52 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=13.9
Q ss_pred CcchhCCCCcccceecc
Q 047986 1 LARRLGLPPRQIAVWYQ 17 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQ 17 (134)
+|+.+|+++.+|.-|..
T Consensus 29 ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 29 IANDLGINRVTLKNWII 45 (97)
T ss_dssp HHHHHTSCHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHH
Confidence 36788999999998964
No 111
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=67.29 E-value=24 Score=23.22 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 32 YKTIQQELDNVLAENRKLEQEVGMLK 57 (134)
Q Consensus 32 ~~~lk~~~~~l~~en~~l~~e~~~L~ 57 (134)
+..|...++.+.+|+..|+.++..|+
T Consensus 48 N~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 48 NEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444
No 112
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=67.26 E-value=19 Score=23.72 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 38 ELDNVLAENRKLEQEVGMLKHELKKSQQ 65 (134)
Q Consensus 38 ~~~~l~~en~~l~~e~~~L~~e~~~~~~ 65 (134)
+++.|..+...|+.++..|+.++..++.
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555543
No 113
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=67.08 E-value=18 Score=23.89 Aligned_cols=37 Identities=14% Similarity=0.377 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 29 ELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQ 65 (134)
Q Consensus 29 ~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~ 65 (134)
+.++..++...+.+..++.++..+...|.++...+..
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456667777777888888888888877777766553
No 114
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=66.76 E-value=22 Score=26.62 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 33 KTIQQELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 33 ~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
..+=..+..|.++|.+|++++++|+.|-.++..++
T Consensus 148 d~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 148 CYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555666677777777777777666655443
No 115
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=65.91 E-value=14 Score=20.64 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 38 ELDNVLAENRKLEQEVGMLKHELKKS 63 (134)
Q Consensus 38 ~~~~l~~en~~l~~e~~~L~~e~~~~ 63 (134)
+++.|..+...-+.++++|++++..+
T Consensus 8 ENekLhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34444444444444445555544443
No 116
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=64.76 E-value=31 Score=24.38 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 31 DYKTIQQELDNVLAENRKLEQEVGMLKHELKKS 63 (134)
Q Consensus 31 ~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~ 63 (134)
+...++.++..+..+...+.+++..|+.++..+
T Consensus 90 E~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l 122 (138)
T 3hnw_A 90 EIYDLKHELIAAQIKAESSAKEIKELKSEINKY 122 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344443333333334444444444444433
No 117
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=63.14 E-value=24 Score=22.30 Aligned_cols=31 Identities=16% Similarity=0.157 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 38 ELDNVLAENRKLEQEVGMLKHELKKSQQMLL 68 (134)
Q Consensus 38 ~~~~l~~en~~l~~e~~~L~~e~~~~~~~l~ 68 (134)
++..|..++..|+.++..|+.++..+...+.
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666677777777777766666654
No 118
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=62.88 E-value=26 Score=23.06 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 33 KTIQQELDNVLAENRKLEQEVGMLKH 58 (134)
Q Consensus 33 ~~lk~~~~~l~~en~~l~~e~~~L~~ 58 (134)
..|....+.+.+|...|+.++..|++
T Consensus 41 ~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 41 EKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444443
No 119
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=62.83 E-value=18 Score=20.21 Aligned_cols=27 Identities=19% Similarity=0.291 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 31 DYKTIQQELDNVLAENRKLEQEVGMLK 57 (134)
Q Consensus 31 ~~~~lk~~~~~l~~en~~l~~e~~~L~ 57 (134)
++..|..+++.-.++..+|+.++.+|+
T Consensus 8 ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 445555555555555566666666554
No 120
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=60.92 E-value=9.2 Score=24.81 Aligned_cols=30 Identities=20% Similarity=0.444 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 29 ELDYKTIQQELDNVLAENRKLEQEVGMLKH 58 (134)
Q Consensus 29 ~~~~~~lk~~~~~l~~en~~l~~e~~~L~~ 58 (134)
+.+...||..+..|.+.+.+|+.|+.-|+.
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777788888888888777777775
No 121
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=60.22 E-value=26 Score=22.77 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 35 IQQELDNVLAENRKLEQEVGMLKHELKK 62 (134)
Q Consensus 35 lk~~~~~l~~en~~l~~e~~~L~~e~~~ 62 (134)
|+.....+..+...|+.++..|+.++..
T Consensus 57 L~~~~~~l~~~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 57 VQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444555555555554443
No 122
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=59.98 E-value=17 Score=19.12 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 35 IQQELDNVLAENRKLEQEVGMLKH 58 (134)
Q Consensus 35 lk~~~~~l~~en~~l~~e~~~L~~ 58 (134)
+..-+..+..||.+|+..++.|-+
T Consensus 4 lnallasleaenkqlkakveella 27 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEELLA 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556677777777777766654
No 123
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=59.79 E-value=15 Score=23.34 Aligned_cols=32 Identities=6% Similarity=0.197 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 31 DYKTIQQELDNVLAENRKLEQEVGMLKHELKK 62 (134)
Q Consensus 31 ~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~ 62 (134)
.+..|+.+...+..+...|+.++..|..++..
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557777888888888888888888877754
No 124
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=58.83 E-value=12 Score=22.57 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047986 36 QQELDNVLAENRKLEQEVGMLKH 58 (134)
Q Consensus 36 k~~~~~l~~en~~l~~e~~~L~~ 58 (134)
...++.+..||..|+.++..|++
T Consensus 33 ~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 33 RKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444555555444444443
No 125
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=58.42 E-value=33 Score=24.24 Aligned_cols=28 Identities=18% Similarity=0.288 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 35 IQQELDNVLAENRKLEQEVGMLKHELKK 62 (134)
Q Consensus 35 lk~~~~~l~~en~~l~~e~~~L~~e~~~ 62 (134)
.+-+++.+..++..|+.++..|..++.+
T Consensus 101 ~~~k~e~~~~e~~~l~~~~~~l~~~~~~ 128 (138)
T 3hnw_A 101 AQIKAESSAKEIKELKSEINKYQKNIVK 128 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 126
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=57.67 E-value=16 Score=27.41 Aligned_cols=36 Identities=11% Similarity=0.031 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 32 YKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 32 ~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
-...+.-++-++..+..|+.++.+|+.++++++...
T Consensus 140 ~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~ 175 (184)
T 3w03_C 140 AEVIRELICYCLDTIAENQAKNEHLQKENERLLRDW 175 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667777777777777777777777766543
No 127
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=57.00 E-value=31 Score=21.11 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 35 IQQELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 35 lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
-+...+.|..+-..|..++..|..++..+..++
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777788888888888888777655
No 128
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=56.97 E-value=11 Score=19.40 Aligned_cols=15 Identities=40% Similarity=0.625 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 047986 45 ENRKLEQEVGMLKHE 59 (134)
Q Consensus 45 en~~l~~e~~~L~~e 59 (134)
.|.+|++|...|..|
T Consensus 8 knarlkqeiaaleye 22 (28)
T 3ra3_B 8 KNARLKQEIAALEYE 22 (28)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHH
Confidence 334444444444433
No 129
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=56.92 E-value=32 Score=22.33 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047986 38 ELDNVLAENRKLEQEVGMLKH 58 (134)
Q Consensus 38 ~~~~l~~en~~l~~e~~~L~~ 58 (134)
+.+.+.++...|+.++..|++
T Consensus 42 ~ie~~~eEi~~LkeEN~~L~e 62 (79)
T 2zxx_A 42 EIEQKDSEIARLRKENKDLAE 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444443333
No 130
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=56.44 E-value=5.8 Score=30.74 Aligned_cols=35 Identities=29% Similarity=0.217 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 047986 34 TIQQELDNVLAENRKLEQ---EVGMLKHELKKSQQMLL 68 (134)
Q Consensus 34 ~lk~~~~~l~~en~~l~~---e~~~L~~e~~~~~~~l~ 68 (134)
.++.+++.|++|+..|+. +...|+.|+.+++..+.
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQLESEVADLKKENKDLKESLD 60 (255)
T ss_dssp ---CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555555554443 33455556667666664
No 131
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=55.97 E-value=45 Score=22.67 Aligned_cols=24 Identities=21% Similarity=0.102 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 38 ELDNVLAENRKLEQEVGMLKHELK 61 (134)
Q Consensus 38 ~~~~l~~en~~l~~e~~~L~~e~~ 61 (134)
....|..|-++|+.|+..|..+..
T Consensus 66 ~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 66 RVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555544
No 132
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=55.67 E-value=46 Score=22.69 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=27.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 26 HTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQ 65 (134)
Q Consensus 26 ~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~ 65 (134)
..-+.+...+++..+...-.+-.|+.+++.|++|+..++.
T Consensus 65 ~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 65 EEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666666666666789999999999887663
No 133
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=55.45 E-value=24 Score=22.57 Aligned_cols=31 Identities=16% Similarity=0.315 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 37 QELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 37 ~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
.++..|..++..+..+...|+.+...+...+
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566688888888888888888888877665
No 134
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=54.85 E-value=27 Score=22.64 Aligned_cols=40 Identities=23% Similarity=0.283 Sum_probs=27.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 25 IHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 25 ~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
+..-+.+...+++..+.+.-.+..|+.++..|++|+..+.
T Consensus 44 R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 44 REEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555666666666666778899999999887654
No 135
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=54.33 E-value=39 Score=22.38 Aligned_cols=8 Identities=63% Similarity=0.733 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 047986 49 LEQEVGML 56 (134)
Q Consensus 49 l~~e~~~L 56 (134)
|+.|+..+
T Consensus 67 L~~e~~~~ 74 (90)
T 2wt7_B 67 LKQEVSRL 74 (90)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 136
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.38 E-value=27 Score=28.95 Aligned_cols=47 Identities=26% Similarity=0.385 Sum_probs=26.3
Q ss_pred cchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 18 NRRAREKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 18 NRR~k~K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
+.....|.++.+.+...+..+.+.+..+...++.++..++++++.++
T Consensus 44 ~~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 44 NSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444444455555556666666666666666667666666665544
No 137
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=52.26 E-value=29 Score=22.49 Aligned_cols=32 Identities=25% Similarity=0.261 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 37 QELDNVLAENRKLEQEVGMLKHELKKSQQMLL 68 (134)
Q Consensus 37 ~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l~ 68 (134)
.++..|..++..+..++..|+.+...+...+.
T Consensus 52 ~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888888888888888888776664
No 138
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=51.89 E-value=42 Score=21.75 Aligned_cols=28 Identities=29% Similarity=0.423 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 37 QELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 37 ~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
..+.....||.+|..++.++++++..+.
T Consensus 27 ~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk 54 (79)
T 2zxx_A 27 KALYEALKENEKLHKEIEQKDSEIARLR 54 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666665555554433
No 139
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=51.88 E-value=9.6 Score=19.69 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047986 40 DNVLAENRKLEQEVGMLKHELK 61 (134)
Q Consensus 40 ~~l~~en~~l~~e~~~L~~e~~ 61 (134)
+.|.-||+.|++....|+.++.
T Consensus 3 dalefendaleqkiaalkqkia 24 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKIA 24 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhccHHHHHHHHHHHHHHH
Confidence 3455566666666666665543
No 140
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=50.08 E-value=51 Score=21.57 Aligned_cols=11 Identities=9% Similarity=0.075 Sum_probs=8.3
Q ss_pred CCcCCCCCCCC
Q 047986 78 PSVSTSGDNDL 88 (134)
Q Consensus 78 ~~~~~S~~s~~ 88 (134)
+..||-|++..
T Consensus 47 g~~CPvCgs~l 57 (112)
T 1l8d_A 47 KGKCPVCGREL 57 (112)
T ss_dssp SEECTTTCCEE
T ss_pred CCCCCCCCCcC
Confidence 45799998864
No 141
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=50.07 E-value=77 Score=24.11 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 29 ELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 29 ~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
..++..|...++.+.+|...|+.++..|++-...++
T Consensus 114 LeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q 149 (209)
T 2wvr_A 114 LKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 149 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666777777777766665444444
No 142
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=49.79 E-value=62 Score=26.31 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 35 IQQELDNVLAENRKLEQEVGMLKHELKKSQQ 65 (134)
Q Consensus 35 lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~ 65 (134)
.+.+.+.+++|+.+++++...+..++..+.+
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
T 3oja_A 440 YQHKETQLAEENARLKKLNGEADLALASANA 470 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhhhhhhhhhhhhhHhccc
Confidence 3444444555555555555555544444433
No 143
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=49.55 E-value=42 Score=20.45 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047986 29 ELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQMLLA 69 (134)
Q Consensus 29 ~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l~~ 69 (134)
+.....||+-+..|...-..|+.+...-..|+.+++..+..
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888888888888888888888877753
No 144
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=48.63 E-value=23 Score=27.78 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 29 ELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQMLL 68 (134)
Q Consensus 29 ~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l~ 68 (134)
+.++..++.+++.|...|..|..+...++.|+.+++..+.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEle 92 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVD 92 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788899999999999999999999999999998875
No 145
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=48.55 E-value=55 Score=27.19 Aligned_cols=6 Identities=0% Similarity=0.423 Sum_probs=2.1
Q ss_pred HHHHHH
Q 047986 55 MLKHEL 60 (134)
Q Consensus 55 ~L~~e~ 60 (134)
.++.++
T Consensus 569 ~~~~~~ 574 (597)
T 3oja_B 569 LKRQKV 574 (597)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 146
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=48.50 E-value=57 Score=26.56 Aligned_cols=41 Identities=15% Similarity=0.068 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 28 IELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQMLL 68 (134)
Q Consensus 28 ~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l~ 68 (134)
.+.+...+++..+...++.++++.++++++.++..+...+.
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (487)
T 3oja_A 426 QQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALA 466 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhH
Confidence 44445556666666777777777777777777777765553
No 147
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=48.44 E-value=61 Score=22.63 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 32 YKTIQQELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 32 ~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
+..++-++..|..+-+....++++|+.+...+.
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 344444444444444444445555555444433
No 148
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=47.73 E-value=43 Score=20.05 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047986 34 TIQQELDNVLAENRKLEQEVGM 55 (134)
Q Consensus 34 ~lk~~~~~l~~en~~l~~e~~~ 55 (134)
.|-+..+.|+.||..|++|...
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~d 28 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELED 28 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHh
Confidence 3444445555555555444433
No 149
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=47.43 E-value=34 Score=18.77 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 35 IQQELDNVLAENRKLEQEVGMLKHELKK 62 (134)
Q Consensus 35 lk~~~~~l~~en~~l~~e~~~L~~e~~~ 62 (134)
++.+-..|..|.+.|++..++|+..+.+
T Consensus 5 lq~dE~kLl~ekE~l~~r~eqL~~kLe~ 32 (34)
T 1a93_A 5 VQAEEQKLISEEDLLRKRREQLKHKLEQ 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555556667777777777777766654
No 150
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=47.20 E-value=21 Score=21.42 Aligned_cols=33 Identities=9% Similarity=0.140 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 33 KTIQQELDNVLAENRKLEQEVGMLKHELKKSQQ 65 (134)
Q Consensus 33 ~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~ 65 (134)
...-.-++.+..+...|..++..|++++..+..
T Consensus 23 ~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 23 DEVNEFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556778888888999999999998877654
No 151
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=44.36 E-value=50 Score=19.79 Aligned_cols=13 Identities=23% Similarity=0.335 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 047986 33 KTIQQELDNVLAE 45 (134)
Q Consensus 33 ~~lk~~~~~l~~e 45 (134)
+.|+.++-.|+.|
T Consensus 13 e~Lk~ENshLrrE 25 (54)
T 1deb_A 13 EALKMENSNLRQE 25 (54)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHH
Confidence 3344444444333
No 152
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=43.44 E-value=64 Score=20.82 Aligned_cols=47 Identities=17% Similarity=0.346 Sum_probs=28.0
Q ss_pred cchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 18 NRRAREKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 18 NRR~k~K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
.||.+.+..+...+...+++-.+.|.+=..+|+.-+.+|+.+-..+.
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~ 59 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVD 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 35666666667777777776666666555555555555554444443
No 153
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=41.40 E-value=91 Score=23.72 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 38 ELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 38 ~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
+++.|..+...++.++..|++++..++..+
T Consensus 116 EN~~Lh~~ie~l~eEi~~LkeEn~eLkeLa 145 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIARLKKENKELAEVA 145 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555555555433
No 154
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=40.59 E-value=72 Score=20.60 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 33 KTIQQELDNVLAENRKLEQEVGMLKHELKKSQQ 65 (134)
Q Consensus 33 ~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~ 65 (134)
..+...++.+..|..+|+-+++.+..++.++..
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 446667777777887888888877777776654
No 155
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=40.57 E-value=52 Score=22.39 Aligned_cols=30 Identities=17% Similarity=0.323 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 33 KTIQQELDNVLAENRKLEQEVGMLKHELKK 62 (134)
Q Consensus 33 ~~lk~~~~~l~~en~~l~~e~~~L~~e~~~ 62 (134)
..+...++...+++..|+.++..|..|+.+
T Consensus 85 ~~l~~~~~~e~~~~~~L~~~i~~Le~el~~ 114 (117)
T 3kin_B 85 EEWKKKYEKEKEKNKALKSVIQHLEVELNR 114 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777777777777777777765
No 156
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=40.09 E-value=31 Score=25.90 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047986 38 ELDNVLAENRKLEQEVGMLKHE 59 (134)
Q Consensus 38 ~~~~l~~en~~l~~e~~~L~~e 59 (134)
....|+++|.+|++|+++|..+
T Consensus 162 ~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 162 TIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666666666666666553
No 157
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=39.99 E-value=77 Score=20.73 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 37 QELDNVLAENRKLEQEVGMLKHELKKSQQ 65 (134)
Q Consensus 37 ~~~~~l~~en~~l~~e~~~L~~e~~~~~~ 65 (134)
.+++.|..+...++.++..|++++..+..
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444545555555555566666665543
No 158
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=39.54 E-value=60 Score=26.80 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=21.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 26 HTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELK 61 (134)
Q Consensus 26 ~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~ 61 (134)
...+.+...++...+.+.++.++++.++..+++++.
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 41 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLF 41 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666666666555553
No 159
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=38.86 E-value=31 Score=24.13 Aligned_cols=60 Identities=20% Similarity=0.299 Sum_probs=24.3
Q ss_pred chhCCCCcccceecccchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 3 RRLGLPPRQIAVWYQNRRAREKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 3 ~~l~L~e~qVkiWFQNRR~k~K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
+.+|++-..|+-.+...+.... ........+....+.+.++...|+.....|...+...+
T Consensus 70 r~~G~sL~eIk~~l~~~~~~~~--~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 129 (148)
T 3gpv_A 70 KNTGMPIQKIKQFIDWSMEGDS--TILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYE 129 (148)
T ss_dssp HTTTCCHHHHHHHHHHHHHCGG--GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCCHHHHHHHHHhhhcCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666655543221110 11112223344444444444444444444444444333
No 160
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=38.15 E-value=76 Score=20.18 Aligned_cols=19 Identities=26% Similarity=0.225 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047986 49 LEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 49 l~~e~~~L~~e~~~~~~~l 67 (134)
|++++....+++..++..+
T Consensus 45 LEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 45 LELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 161
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=37.33 E-value=61 Score=18.82 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047986 35 IQQELDNVLAENRKLEQEV 53 (134)
Q Consensus 35 lk~~~~~l~~en~~l~~e~ 53 (134)
+..-+.+|..|..+|+.|+
T Consensus 29 lekiianlrdeiarlenev 47 (52)
T 3he5_B 29 LEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444
No 162
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=36.14 E-value=92 Score=23.37 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047986 38 ELDNVLAENRKLEQEVGMLKHEL 60 (134)
Q Consensus 38 ~~~~l~~en~~l~~e~~~L~~e~ 60 (134)
+++....|...|+.+++.++...
T Consensus 35 ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 35 KLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333333344444444444333
No 163
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=35.15 E-value=40 Score=25.26 Aligned_cols=25 Identities=12% Similarity=-0.009 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 40 DNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 40 ~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
......-..|+.++..|+.|++++.
T Consensus 157 ~~~L~~i~~L~a~N~hLqkENeRL~ 181 (186)
T 3q4f_C 157 CYCLDTIAENQAKNEHLQKENERLL 181 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444443
No 164
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=34.99 E-value=96 Score=20.87 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 35 IQQELDNVLAENRKLEQEVGMLKHELKKSQQMLL 68 (134)
Q Consensus 35 lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l~ 68 (134)
-..+++.++.+...|+.|+.+|+.+...+...+-
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888999999999988888776663
No 165
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=34.94 E-value=1e+02 Score=20.81 Aligned_cols=32 Identities=13% Similarity=0.416 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 31 DYKTIQQELDNVLAENRKLEQEVGMLKHELKK 62 (134)
Q Consensus 31 ~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~ 62 (134)
....+++.++.+..++.+|..+...++.....
T Consensus 21 ~I~~LR~qid~~~~e~a~l~leldn~~~~~ed 52 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVEVERDNLAEDIMR 52 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666655555555544443
No 166
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=34.93 E-value=94 Score=25.42 Aligned_cols=35 Identities=9% Similarity=0.148 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 27 TIELDYKTIQQELDNVLAENRKLEQEVGMLKHELK 61 (134)
Q Consensus 27 ~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~ 61 (134)
..+.+...++++.+.+.++...++.++..+++++.
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 41 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILI 41 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555443
No 167
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=34.38 E-value=63 Score=26.45 Aligned_cols=44 Identities=9% Similarity=0.125 Sum_probs=22.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 24 KIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 24 K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
+....+.+...+..+++.+..+...++.+.......-.+++..+
T Consensus 11 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~ 54 (403)
T 4etp_A 11 KIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNEL 54 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666666666665555554444333334444444
No 168
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=34.04 E-value=91 Score=20.06 Aligned_cols=28 Identities=14% Similarity=0.381 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 34 TIQQELDNVLAENRKLEQEVGMLKHELK 61 (134)
Q Consensus 34 ~lk~~~~~l~~en~~l~~e~~~L~~e~~ 61 (134)
.|+.+.+.+..++.++..+...++....
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~e 31 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIM 31 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555444443
No 169
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=33.65 E-value=1.1e+02 Score=25.27 Aligned_cols=37 Identities=11% Similarity=0.027 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 31 DYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 31 ~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
....++++++.+.+++..++.+..+...+-.+++.++
T Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~ 54 (412)
T 3u06_A 18 RTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTV 54 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333333333344333
No 170
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=33.54 E-value=1.1e+02 Score=20.71 Aligned_cols=48 Identities=8% Similarity=0.185 Sum_probs=33.1
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 21 AREKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQMLL 68 (134)
Q Consensus 21 ~k~K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l~ 68 (134)
-|.+....+..+..+++++.....+..+++.....|+.++..++.++.
T Consensus 35 LKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 35 LKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666677777777777777777777777777777776664
No 171
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=33.48 E-value=1.5e+02 Score=24.53 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047986 47 RKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 47 ~~l~~e~~~L~~e~~~~~~~l 67 (134)
+..++...++++|+....+.+
T Consensus 554 ~~~~~~~~~l~~e~~~~~~~~ 574 (597)
T 3oja_B 554 DNKRAKQAELRQETSLKRQKV 574 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHH
Confidence 333444455555554444333
No 172
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=33.01 E-value=1.2e+02 Score=20.78 Aligned_cols=14 Identities=7% Similarity=0.536 Sum_probs=5.7
Q ss_pred hHHHHHHHHHHHHH
Q 047986 28 IELDYKTIQQELDN 41 (134)
Q Consensus 28 ~~~~~~~lk~~~~~ 41 (134)
...++..|+.++..
T Consensus 15 L~~E~e~~k~K~~~ 28 (111)
T 2v66_B 15 LKYEVEALKEKLEH 28 (111)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 173
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=32.81 E-value=92 Score=19.63 Aligned_cols=20 Identities=30% Similarity=0.341 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 047986 42 VLAENRKLEQEVGMLKHELK 61 (134)
Q Consensus 42 l~~en~~l~~e~~~L~~e~~ 61 (134)
|..+...|+.++..|+..++
T Consensus 55 Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 55 LQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 174
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=32.78 E-value=1.3e+02 Score=22.78 Aligned_cols=39 Identities=13% Similarity=0.372 Sum_probs=23.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 26 HTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 26 ~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
++.+.++...-.++..|...-..++.++..|+..++++.
T Consensus 33 ~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 33 QQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 445555555556666666666666666666666666554
No 175
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=32.06 E-value=1.2e+02 Score=20.61 Aligned_cols=8 Identities=38% Similarity=1.086 Sum_probs=0.0
Q ss_pred cceecccc
Q 047986 12 IAVWYQNR 19 (134)
Q Consensus 12 VkiWFQNR 19 (134)
+.-||+.+
T Consensus 9 aE~~y~~K 16 (129)
T 3tnu_B 9 AESWYQTK 16 (129)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 45677665
No 176
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=31.90 E-value=90 Score=20.07 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 32 YKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 32 ~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
+...+.+-+.|++....|...+.+|..|+.-++...
T Consensus 10 m~AVREEVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 10 MYAVREEVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp GGTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344566778889999999999999999998887655
No 177
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=30.94 E-value=78 Score=18.11 Aligned_cols=33 Identities=18% Similarity=0.411 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 35 IQQELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 35 lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
|...-..+...+..|+..+..|..|+.-+++.+
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 444445555566667777777777776666554
No 178
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=30.69 E-value=12 Score=24.34 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=8.7
Q ss_pred hhCCCCcccceecccchhhHHH
Q 047986 4 RLGLPPRQIAVWYQNRRAREKI 25 (134)
Q Consensus 4 ~l~L~e~qVkiWFQNRR~k~K~ 25 (134)
+.++++.+|..||++.|...+.
T Consensus 2 ~~~~~~~~~~~W~~~~r~~~~~ 23 (97)
T 1b72_A 2 EPNTPTARTFDWMKVKRNPPKT 23 (97)
T ss_dssp ------CCCCGGGGC-------
T ss_pred CCCCCCcccccccccccCCCCC
Confidence 5678899999999999987653
No 179
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=30.46 E-value=71 Score=21.34 Aligned_cols=23 Identities=13% Similarity=0.117 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047986 42 VLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 42 l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
|+.+...++.++..++++++.++
T Consensus 12 l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 12 LEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 55556667777777777777665
No 180
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=29.87 E-value=76 Score=20.47 Aligned_cols=15 Identities=33% Similarity=0.419 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 047986 48 KLEQEVGMLKHELKK 62 (134)
Q Consensus 48 ~l~~e~~~L~~e~~~ 62 (134)
.|..+...|+.|+..
T Consensus 41 ELt~E~e~l~~El~s 55 (77)
T 2w83_C 41 ELTCEKDVLQGELEA 55 (77)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHH
Confidence 334444444444443
No 181
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=29.73 E-value=1e+02 Score=23.17 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 36 QQELDNVLAENRKLEQEVGMLKHELK 61 (134)
Q Consensus 36 k~~~~~l~~en~~l~~e~~~L~~e~~ 61 (134)
+.++..|..++.+|+.+...|.++++
T Consensus 138 ~~~~~~L~~e~~~l~~~~~~l~~qlE 163 (213)
T 1ik9_A 138 QAKNEHLQKENERLLRDWNDVQGRFE 163 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 182
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=29.03 E-value=1.1e+02 Score=20.88 Aligned_cols=9 Identities=11% Similarity=0.671 Sum_probs=0.0
Q ss_pred ccceecccc
Q 047986 11 QIAVWYQNR 19 (134)
Q Consensus 11 qVkiWFQNR 19 (134)
.+.-||+.+
T Consensus 10 eaE~~y~~K 18 (131)
T 3tnu_A 10 DAEEWFFTK 18 (131)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 345677665
No 183
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=28.47 E-value=1.3e+02 Score=20.04 Aligned_cols=34 Identities=12% Similarity=0.286 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 31 DYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 31 ~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
+...|+.+.+.|..+-+.|......++..+..+.
T Consensus 7 ~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 7 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567778888888877777777777777776654
No 184
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=27.22 E-value=2e+02 Score=21.55 Aligned_cols=29 Identities=10% Similarity=0.086 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 33 KTIQQELDNVLAENRKLEQEVGMLKHELK 61 (134)
Q Consensus 33 ~~lk~~~~~l~~en~~l~~e~~~L~~e~~ 61 (134)
..|..++..|..+.+....|+..|+.++.
T Consensus 23 ~~L~~En~~L~~ql~~k~~ei~~L~~ql~ 51 (190)
T 4emc_A 23 ANLVNENFVLSEKLDTKATEIKQLQKQID 51 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444433
No 185
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=26.70 E-value=1.2e+02 Score=18.74 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047986 40 DNVLAENRKLEQEVGMLKHEL 60 (134)
Q Consensus 40 ~~l~~en~~l~~e~~~L~~e~ 60 (134)
..+.+|-+.+++++..|+.|+
T Consensus 37 ~~ls~Elr~mQ~~lq~LQsen 57 (63)
T 2w6a_A 37 SSLSDELRKLQREIHKLQAEN 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhhh
Confidence 333344444444444444443
No 186
>1fqj_C Retinal ROD rhodopsin-sensitive CGMP 3',5'- cyclic phosphodiesterase gamma-subunit...; RGS9, transducin, effector, pdegamma, G protein; HET: GDP; 2.02A {Bos taurus} SCOP: j.51.1.1
Probab=26.08 E-value=15 Score=20.86 Aligned_cols=19 Identities=32% Similarity=0.716 Sum_probs=15.2
Q ss_pred CccccccCCCCCCCcchhh
Q 047986 95 LNMTCNWEDTGLLPMDELY 113 (134)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~ 113 (134)
.+-+|+|+.-+-+.|.||.
T Consensus 19 ~tViCPWEAf~~lEL~eLA 37 (42)
T 1fqj_C 19 ITVICPWEAFNHLELHELA 37 (42)
T ss_dssp HHTTCGGGGGTTSCHHHHH
T ss_pred eEEEcchHhcCchhHHHHh
Confidence 3468999999988887774
No 187
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=25.88 E-value=16 Score=25.52 Aligned_cols=17 Identities=35% Similarity=0.841 Sum_probs=14.5
Q ss_pred CcchhCCCCcccceecc
Q 047986 1 LARRLGLPPRQIAVWYQ 17 (134)
Q Consensus 1 LA~~l~L~e~qVkiWFQ 17 (134)
+|..+|+++.++++|+-
T Consensus 75 va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 75 LSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp HHHHHCCCGGGCEEEEC
T ss_pred HHHHhCCCcccEEEEEe
Confidence 36789999999999963
No 188
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=25.88 E-value=70 Score=20.98 Aligned_cols=22 Identities=9% Similarity=0.185 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047986 35 IQQELDNVLAENRKLEQEVGML 56 (134)
Q Consensus 35 lk~~~~~l~~en~~l~~e~~~L 56 (134)
++.+...|.++..+|+++..++
T Consensus 6 L~~~i~~L~~q~~~L~~ei~~~ 27 (85)
T 3viq_B 6 LESRVHLLEQQKEQLESSLQDA 27 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 189
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=24.91 E-value=49 Score=25.45 Aligned_cols=38 Identities=8% Similarity=0.072 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 30 LDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 30 ~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
..+..+-.+.+.+..+.+.++.++..++.++.++...+
T Consensus 141 ~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~ 178 (250)
T 2ve7_C 141 ETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEV 178 (250)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666666666666666666555555444
No 190
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=24.45 E-value=1.6e+02 Score=19.55 Aligned_cols=20 Identities=15% Similarity=0.310 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 047986 48 KLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 48 ~l~~e~~~L~~e~~~~~~~l 67 (134)
+|+.+...|.+|++++...+
T Consensus 53 KL~Rk~DKl~~ele~l~~~l 72 (93)
T 3sjb_C 53 KNNRKLDSLDKEINNLKDEI 72 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666655544
No 191
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=23.48 E-value=26 Score=21.36 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=17.2
Q ss_pred cchhCCCCcccceecccchhh
Q 047986 2 ARRLGLPPRQIAVWYQNRRAR 22 (134)
Q Consensus 2 A~~l~L~e~qVkiWFQNRR~k 22 (134)
+.+.|+++.+++++|..+|-.
T Consensus 32 ~~~~gi~~~~~rf~fdG~~l~ 52 (72)
T 1wm3_A 32 CERQGLSMRQIRFRFDGQPIN 52 (72)
T ss_dssp HHHHTCCTTTCEEEETTEECC
T ss_pred HHHhCCCcceEEEEECCEEcC
Confidence 456799999999999888754
No 192
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=23.46 E-value=87 Score=20.91 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047986 35 IQQELDNVLAENRKLEQEVGMLK 57 (134)
Q Consensus 35 lk~~~~~l~~en~~l~~e~~~L~ 57 (134)
++.+...+..+...++.++..|+
T Consensus 12 l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 12 LEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444
No 193
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=23.21 E-value=1.4e+02 Score=19.89 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
Q 047986 30 LDYKTIQQELDNVLAEN------------RKLEQEVGMLKHELKKSQQMLL 68 (134)
Q Consensus 30 ~~~~~lk~~~~~l~~en------------~~l~~e~~~L~~e~~~~~~~l~ 68 (134)
.+...++.+.-.|..|. .+|+.+...|.+|++.+...+.
T Consensus 30 ~~~~~lk~E~~~lk~E~~stSaQDEFAKWAKL~Rk~DKl~~ele~l~~~L~ 80 (94)
T 3vlc_E 30 KKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQ 80 (94)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHTTTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666555 3688888888888888776663
No 194
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=22.70 E-value=1.3e+02 Score=17.81 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=29.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 25 IHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQML 67 (134)
Q Consensus 25 ~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l 67 (134)
..+...+...|..+.+.|..+-..|+.++...++|-.+..+-+
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566677777777777777777777777777777666544
No 195
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=22.42 E-value=26 Score=24.13 Aligned_cols=22 Identities=18% Similarity=0.539 Sum_probs=17.9
Q ss_pred cchhCCCCcccceecccchhhH
Q 047986 2 ARRLGLPPRQIAVWYQNRRARE 23 (134)
Q Consensus 2 A~~l~L~e~qVkiWFQNRR~k~ 23 (134)
+.+.|++..+++++|..+|-..
T Consensus 71 ~er~Gl~~~~irFlFDG~rI~~ 92 (115)
T 3kyd_D 71 CQRQGVPMNSLRFLFEGQRIAD 92 (115)
T ss_dssp HHHHTCCTTSEEEEETTEECCT
T ss_pred HHHhCCChhhEEEEECCeECCC
Confidence 4567999999999998887543
No 196
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.30 E-value=1.9e+02 Score=23.85 Aligned_cols=40 Identities=23% Similarity=0.344 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 29 ELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQQMLL 68 (134)
Q Consensus 29 ~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~~~l~ 68 (134)
..+...++++++.|..++..++.+...++.++.+++..+.
T Consensus 48 ~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~ 87 (428)
T 4b4t_K 48 YFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVK 87 (428)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788888888888898888899888888887764
No 197
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=21.81 E-value=91 Score=15.79 Aligned_cols=18 Identities=44% Similarity=0.501 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047986 44 AENRKLEQEVGMLKHELK 61 (134)
Q Consensus 44 ~en~~l~~e~~~L~~e~~ 61 (134)
.|-..|+-|+..|++|.+
T Consensus 7 devgelkgevralkdevk 24 (27)
T 3v86_A 7 DEVGELKGEVRALKDEVK 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHh
Confidence 344445555555555544
No 198
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=21.66 E-value=1.5e+02 Score=18.35 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047986 47 RKLEQEVGMLKHELKKSQQMLL 68 (134)
Q Consensus 47 ~~l~~e~~~L~~e~~~~~~~l~ 68 (134)
.+|+.+...|.++++.+...+.
T Consensus 35 aKL~Rk~DKl~~ele~l~~~l~ 56 (65)
T 3sja_C 35 TKNNRKLDSLDKEINNLKDEIQ 56 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3688888888888888877774
No 199
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=21.52 E-value=1.7e+02 Score=18.92 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 37 QELDNVLAENRKLEQEVGMLKHELKK 62 (134)
Q Consensus 37 ~~~~~l~~en~~l~~e~~~L~~e~~~ 62 (134)
.++......|+.|..++..|+.++..
T Consensus 45 skL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 45 SQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555544
No 200
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=20.94 E-value=1.5e+02 Score=20.35 Aligned_cols=7 Identities=29% Similarity=0.458 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 047986 34 TIQQELD 40 (134)
Q Consensus 34 ~lk~~~~ 40 (134)
.++.+++
T Consensus 18 ~l~~~L~ 24 (122)
T 3viq_A 18 NLQEQLI 24 (122)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 201
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=20.36 E-value=1.9e+02 Score=19.99 Aligned_cols=30 Identities=13% Similarity=0.275 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 34 TIQQELDNVLAENRKLEQEVGMLKHELKKS 63 (134)
Q Consensus 34 ~lk~~~~~l~~en~~l~~e~~~L~~e~~~~ 63 (134)
.+....+.|.+++..+++++..|+.++...
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777788888888888888776544
No 202
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=20.24 E-value=1.8e+02 Score=21.43 Aligned_cols=54 Identities=9% Similarity=0.033 Sum_probs=29.6
Q ss_pred chhCCCCcccceecccchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047986 3 RRLGLPPRQIAVWYQNRRAREKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKKSQ 64 (134)
Q Consensus 3 ~~l~L~e~qVkiWFQNRR~k~K~~~~~~~~~~lk~~~~~l~~en~~l~~e~~~L~~e~~~~~ 64 (134)
+.+|++-..|+-.+..+ . ..-...+....+.+.++..+|+.....|...+..+.
T Consensus 60 ~~~g~~l~~i~~~~~~~-~-------~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~ 113 (278)
T 1r8e_A 60 KYIGTPLEEMKKAQDLE-M-------EELFAFYTEQERQIREKLDFLSALEQTISLVKKRMK 113 (278)
T ss_dssp HHTTCCHHHHHHHTTSC-H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHhC-h-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777776554 1 112334555555555555555555555555444433
No 203
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=20.23 E-value=88 Score=19.49 Aligned_cols=14 Identities=0% Similarity=0.216 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 047986 49 LEQEVGMLKHELKK 62 (134)
Q Consensus 49 l~~e~~~L~~e~~~ 62 (134)
|+.++..|..++..
T Consensus 62 L~~~~~~L~~e~~~ 75 (80)
T 1hlo_A 62 MRRKNHTHQQDIDD 75 (80)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
Done!