BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>047987
MAGMMSSSLRRSIAPTNSLSLLRKPHLLLQSFYSSKSSPAFSSSPETLNDENDAVPTSGI
SRPLSEILKELNKNVPNSLIKIRVEDGFSMKYIPWHIVNRIMNLHAPEWSGEVRNITYSV
DGKTVSVVYRVTIYGTDAEVTSNSVNILLLIEN

High Scoring Gene Products

Symbol, full name Information P value
RAD52-1
radiation sensitive 51-1 		protein from Arabidopsis thaliana 4.4e-36
RAD52-2
AT5G47870 		protein from Arabidopsis thaliana 1.3e-15

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  047987
        (153 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2032313 - symbol:RAD52-1 "radiation sensitive ...   389  4.4e-36   1
TAIR|locus:2160967 - symbol:RAD52-2 "AT5G47870" species:3...   196  1.3e-15   1


>TAIR|locus:2032313 [details] [associations]
            symbol:RAD52-1 "radiation sensitive 51-1" species:3702
            "Arabidopsis thaliana" [GO:0005739 "mitochondrion"
            evidence=ISM;IDA] [GO:0050897 "cobalt ion binding" evidence=IDA]
            [GO:0000724 "double-strand break repair via homologous
            recombination" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0006281 "DNA repair" evidence=IMP]
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005634
            GO:GO:0003690 GO:GO:0003697 GO:GO:0050897 GO:GO:0000724
            EMBL:AC016162 ProtClustDB:CLSN2683003 EMBL:AY128372 EMBL:BT000380
            IPI:IPI00521011 PIR:H96737 RefSeq:NP_177287.1 RefSeq:NP_849876.1
            UniGene:At.70183 PaxDb:Q9FVV7 PRIDE:Q9FVV7
            EnsemblPlants:AT1G71310.1 EnsemblPlants:AT1G71310.2 GeneID:843472
            KEGG:ath:AT1G71310 TAIR:At1g71310 eggNOG:NOG149928
            HOGENOM:HOG000240561 InParanoid:Q9FVV7 OMA:NIHAPEW PhylomeDB:Q9FVV7
            ArrayExpress:Q9FVV7 Genevestigator:Q9FVV7 Uniprot:Q9FVV7
        Length = 176

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 73/94 (77%), Positives = 84/94 (89%)

Query:    51 ENDAVPTSGISRPLSEILKELNKNVPNSLIKIRVEDGFSMKYIPWHIVNRIMNLHAPEWS 110
             END VPTSGISRPL+EILKELNK VP+S+I+ RVEDG S+KYIPWHIVNRIMN+HAPEWS
Sbjct:    42 END-VPTSGISRPLAEILKELNKKVPDSVIRTRVEDGCSIKYIPWHIVNRIMNMHAPEWS 100

Query:   111 GEVRNITYSVDGKTVSVVYRVTIYGTDAEVTSNS 144
             GEVR++TYS DG TV+V YRVT+YGTDAE+   S
Sbjct:   101 GEVRSVTYSPDGNTVTVAYRVTLYGTDAEIFRES 134


>TAIR|locus:2160967 [details] [associations]
            symbol:RAD52-2 "AT5G47870" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0000724 "double-strand break
            repair via homologous recombination" evidence=IMP] EMBL:CP002688
            GO:GO:0009507 EMBL:AB016886 GO:GO:0000724 EMBL:BT024916
            EMBL:AK175664 IPI:IPI00533632 RefSeq:NP_199598.1 UniGene:At.26615
            UniGene:At.63891 PRIDE:Q9FIJ4 EnsemblPlants:AT5G47870.1
            GeneID:834838 KEGG:ath:AT5G47870 TAIR:At5g47870 InParanoid:Q9FIJ4
            OMA:GMTRPLV PhylomeDB:Q9FIJ4 ProtClustDB:CLSN2683003
            ArrayExpress:Q9FIJ4 Genevestigator:Q9FIJ4 Uniprot:Q9FIJ4
        Length = 199

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 39/91 (42%), Positives = 61/91 (67%)

Query:    57 TSGISRPLSEILKELNKNVPNSLIKIRVEDGFSMK---YIPWHIVNRIMNLHAPEWSGEV 113
             +S I+RPL EIL++LNK +P++++K       S     +IPW+  NR+++ +AP W GEV
Sbjct:    71 SSSITRPLIEILRDLNKKIPDNIVKSHDPPSTSAATSGFIPWYHANRMLSFYAPGWCGEV 130

Query:   114 RNITYSVDGKTVSVVYRVTIYGTDAEVTSNS 144
             R++ +S +G  V+VVYR+TI G+D E    S
Sbjct:   131 RDVIFSENGN-VTVVYRLTIRGSDGEAHRES 160


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.130   0.366    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      153       125   0.00091  102 3  11 23  0.42    31
                                                     29  0.39    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  536 (57 KB)
  Total size of DFA:  114 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.01u 0.12s 12.13t   Elapsed:  00:00:01
  Total cpu time:  12.01u 0.12s 12.13t   Elapsed:  00:00:01
  Start:  Fri May 10 04:26:19 2013   End:  Fri May 10 04:26:20 2013

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