BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047987
(153 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CXH|A Chain A, Crystal Structure Of Probable Ribosomal Biogenesis Protein
From Aeropyrum Pernix K1
Length = 217
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 28/52 (53%)
Query: 79 LIKIRVEDGFSMKYIPWHIVNRIMNLHAPEWSGEVRNITYSVDGKTVSVVYR 130
L+ ++ G ++++ ++ L PE +G V + S+D +TV+V +R
Sbjct: 141 LVARPLDSGVAVEFADAFVIAFHARLKPPEAAGYVEAVIESLDARTVAVTFR 192
>pdb|1QKR|A Chain A, Crystal Structure Of The Vinculin Tail And A Pathway For
Activation
pdb|1QKR|B Chain B, Crystal Structure Of The Vinculin Tail And A Pathway For
Activation
Length = 188
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 64 LSEILKELNKNVPNSLIKIRVEDGFSMKYI---PWH 96
L + +KE + + IKIR + GF+++++ PW+
Sbjct: 152 LXQSVKETVREAEAASIKIRTDAGFTLRWVRKTPWY 187
>pdb|3N17|A Chain A, Crystal Stricture Of E145qY227F CHITINASE IN COMPLEX WITH
NAG FROM Bacillus Cereus Nctu2
Length = 333
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 106 APEWSGEVRNITYSVDGKTVSVVYRVTIYGTDAEVTSN 143
+P+W +V N+++ G S V +YGTDA+ S+
Sbjct: 29 SPKW--DVINVSFGETGGDRSTVEFSPVYGTDADFKSD 64
>pdb|3N18|A Chain A, Crystal Stricture Of E145gY227F CHITINASE IN COMPLEX WITH
NAG FROM Bacillus Cereus Nctu2
pdb|3N1A|A Chain A, Crystal Stricture Of E145gY227F CHITINASE IN COMPLEX WITH
CYCLO-(L- His-L-Pro) From Bacillus Cereus Nctu2
Length = 333
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 106 APEWSGEVRNITYSVDGKTVSVVYRVTIYGTDAEVTSN 143
+P+W +V N+++ G S V +YGTDA+ S+
Sbjct: 29 SPKW--DVINVSFGETGGDRSTVEFSPVYGTDADFKSD 64
>pdb|3N15|A Chain A, Crystal Stricture Of E145q Chitinase In Complex With Nag
From Bacillus Cereus Nctu2
Length = 333
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 106 APEWSGEVRNITYSVDGKTVSVVYRVTIYGTDAEVTSN 143
+P+W +V N+++ G S V +YGTDA+ S+
Sbjct: 29 SPKW--DVINVSFGETGGDRSTVEFSPVYGTDADFKSD 64
>pdb|3N11|A Chain A, Crystal Stricture Of Wild-Type Chitinase From Bacillus
Cereus Nctu2
pdb|3N12|A Chain A, Crystal Stricture Of Chitinase In Complex With Zinc Atoms
From Bacillus Cereus Nctu2
Length = 333
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 106 APEWSGEVRNITYSVDGKTVSVVYRVTIYGTDAEVTSN 143
+P+W +V N+++ G S V +YGTDA+ S+
Sbjct: 29 SPKW--DVINVSFGETGGDRSTVEFSPVYGTDADFKSD 64
>pdb|3N13|A Chain A, Crystal Stricture Of D143a Chitinase In Complex With Nag
From Bacillus Cereus Nctu2
Length = 333
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 106 APEWSGEVRNITYSVDGKTVSVVYRVTIYGTDAEVTSN 143
+P+W +V N+++ G S V +YGTDA+ S+
Sbjct: 29 SPKW--DVINVSFGETGGDRSTVEFSPVYGTDADFKSD 64
>pdb|1TR2|A Chain A, Crystal Structure Of Human Full-Length Vinculin (Residues 1-
1066)
pdb|1TR2|B Chain B, Crystal Structure Of Human Full-Length Vinculin (Residues 1-
1066)
Length = 1066
Score = 26.2 bits (56), Expect = 8.3, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 61 SRPLSEILKELNKNVPNSLIKIRVEDGFSMKYI---PWH 96
++ L + +KE + + IKIR + GF+++++ PW+
Sbjct: 1027 AQNLXQSVKETVREAEAASIKIRTDAGFTLRWVRKTPWY 1065
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,461,391
Number of Sequences: 62578
Number of extensions: 125900
Number of successful extensions: 217
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 216
Number of HSP's gapped (non-prelim): 10
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)