BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047987
         (153 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q07812|BAX_HUMAN Apoptosis regulator BAX OS=Homo sapiens GN=BAX PE=1 SV=1
          Length = 192

 Score = 35.0 bits (79), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 11 RSIAPTNSLSLLRKPHLLLQSFYSSKSSPAFSSSPETLNDENDAVPTSGISRPLSEILKE 70
          R   PT+S  +++   LLLQ F   ++      +PE      D VP    ++ LSE LK 
Sbjct: 9  RGGGPTSSEQIMKTGALLLQGFIQDRAGRMGGEAPEL---ALDPVPQDASTKKLSECLKR 65

Query: 71 LNKNVPNSL 79
          +   + +++
Sbjct: 66 IGDELDSNM 74


>sp|O02703|BAX_BOVIN Apoptosis regulator BAX OS=Bos taurus GN=BAX PE=2 SV=1
          Length = 192

 Score = 34.3 bits (77), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 11 RSIAPTNSLSLLRKPHLLLQSFYSSKSSPAFSSSPETLNDENDAVPTSGISRPLSEILKE 70
          R   PT+S  +++   LLLQ F   ++      +PE L  E   VP    ++ LSE LK 
Sbjct: 9  RGGGPTSSEQIMKTGALLLQGFIQDRAGRMGGETPE-LGLEQ--VPQDASTKKLSECLKR 65

Query: 71 LNKNVPNSL 79
          +   + +++
Sbjct: 66 IGDELDSNM 74


>sp|Q1RI08|PRIA_RICBR Primosomal protein N' OS=Rickettsia bellii (strain RML369-C)
           GN=priA PE=3 SV=1
          Length = 648

 Score = 31.6 bits (70), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 29  LQSFYSSKSSPAFSSSPETLNDENDAVPTSGISRPLSEILKELNKNVPNSLIKIRVED 86
           L+  +    S  F+S PE L DE+ A+   GI R    I +E     PNS I +  +D
Sbjct: 383 LECHHCGYQSKIFNSCPECLEDESLAICGPGIER----IEEEAKTLFPNSKIAVISKD 436


>sp|Q97BC2|RFCL_THEVO Replication factor C large subunit OS=Thermoplasma volcanium
           (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
           GSS1) GN=rfcL PE=3 SV=1
          Length = 420

 Score = 31.2 bits (69), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 11/100 (11%)

Query: 27  LLLQSFYSSKSSPAFSSSPETLNDENDAVPTSGISRPLSEILKELNKNVPNSLIKIRVED 86
           + +  FY  +     + S E +N+ ++++     +R L     E  KNV N +  I  ++
Sbjct: 145 ITMNDFYEFRKK---NYSSEVINN-SESIEFKPYARRLDRNYNEFKKNVRNRIKWIINQE 200

Query: 87  GFSMKYIPWHIVNRIMNLHAPEWSGEVRNITYSVDGKTVS 126
           GFS+   P  I+N I++ +AP    ++R+I   V+   VS
Sbjct: 201 GFSL---PDDIINSIIDKNAP----DIRSIINDVEAAAVS 233


>sp|Q9HCK1|ZDBF2_HUMAN DBF4-type zinc finger-containing protein 2 OS=Homo sapiens GN=ZDBF2
            PE=1 SV=3
          Length = 2354

 Score = 29.3 bits (64), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 20   SLLRKPHLLLQSFYSSKSSPAFSSSPETLNDENDAVPTSG--ISRPLSEI 67
            S++++PH+L +   S +   + S SPE  +D ND+   +   + +P+ EI
Sbjct: 1339 SVIKQPHILEEEHASLEDKSSNSYSPEESSDSNDSFQAAADELQKPVKEI 1388


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.129    0.359 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,600,560
Number of Sequences: 539616
Number of extensions: 2157185
Number of successful extensions: 5383
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 5380
Number of HSP's gapped (non-prelim): 23
length of query: 153
length of database: 191,569,459
effective HSP length: 107
effective length of query: 46
effective length of database: 133,830,547
effective search space: 6156205162
effective search space used: 6156205162
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)