Query 047987
Match_columns 153
No_of_seqs 35 out of 37
Neff 2.3
Searched_HMMs 46136
Date Fri Mar 29 05:10:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047987.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047987hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04098 Rad52_Rad22: Rad52/22 97.5 0.00066 1.4E-08 52.1 8.5 84 64-150 2-98 (154)
2 PF06378 DUF1071: Protein of u 96.7 0.0025 5.3E-08 51.6 4.2 49 88-136 20-80 (164)
3 TIGR00607 rad52 recombination 96.7 0.0052 1.1E-07 49.9 6.1 80 67-149 2-91 (161)
4 PF12991 DUF3875: Domain of un 67.8 4.8 0.0001 28.0 2.2 19 114-133 20-38 (54)
5 TIGR00369 unchar_dom_1 unchara 66.8 18 0.00039 25.3 5.0 47 102-149 69-116 (117)
6 KOG0910 Thioredoxin-like prote 66.2 1.3 2.8E-05 35.6 -1.0 16 101-117 65-80 (150)
7 cd02985 TRX_CDSP32 TRX family, 65.3 1.2 2.7E-05 30.8 -1.1 15 101-116 19-33 (103)
8 PRK02047 hypothetical protein; 64.0 8 0.00017 27.9 2.8 41 97-137 32-72 (91)
9 PRK00907 hypothetical protein; 63.1 8.5 0.00018 28.3 2.9 40 98-137 34-73 (92)
10 PF08212 Lipocalin_2: Lipocali 62.5 11 0.00024 27.8 3.4 51 95-151 10-62 (143)
11 cd02994 PDI_a_TMX PDIa family, 62.3 1.1 2.4E-05 30.0 -1.7 15 101-116 20-34 (101)
12 PF14534 DUF4440: Domain of un 61.9 39 0.00084 21.5 6.3 31 109-139 55-85 (107)
13 PHA02278 thioredoxin-like prot 61.6 1.3 2.8E-05 31.9 -1.6 16 101-117 18-33 (103)
14 cd03005 PDI_a_ERp46 PDIa famil 61.3 1.2 2.6E-05 29.3 -1.7 15 101-116 20-34 (102)
15 cd03002 PDI_a_MPD1_like PDI fa 59.7 1.4 3E-05 29.6 -1.6 16 100-116 21-36 (109)
16 TIGR01626 ytfJ_HI0045 conserve 58.8 3.4 7.5E-05 33.3 0.2 44 70-114 24-75 (184)
17 TIGR03000 plancto_dom_1 Planct 58.6 22 0.00047 26.0 4.3 28 109-137 42-69 (75)
18 KOG0771 Prolactin regulatory e 56.8 9.3 0.0002 35.2 2.6 61 78-146 157-217 (398)
19 PRK09381 trxA thioredoxin; Pro 56.5 1.7 3.6E-05 29.6 -1.7 15 101-116 25-39 (109)
20 cd03006 PDI_a_EFP1_N PDIa fami 53.6 1.9 4.1E-05 31.6 -1.9 15 101-116 33-47 (113)
21 cd02999 PDI_a_ERp44_like PDIa 52.6 2.1 4.6E-05 29.9 -1.7 16 101-117 22-37 (100)
22 COG5055 RAD52 Recombination DN 52.2 34 0.00073 31.4 5.3 74 69-147 31-117 (375)
23 PTZ00051 thioredoxin; Provisio 51.4 2.3 5E-05 28.1 -1.6 15 101-116 22-36 (98)
24 cd02948 TRX_NDPK TRX domain, T 51.3 2.3 4.9E-05 29.3 -1.7 15 101-116 21-35 (102)
25 PRK10293 acyl-CoA esterase; Pr 51.1 37 0.0008 25.6 4.6 47 102-149 87-134 (136)
26 PF04881 Adeno_GP19K: Adenovir 50.6 9.8 0.00021 30.8 1.6 16 126-141 47-62 (139)
27 cd03004 PDI_a_ERdj5_C PDIa fam 50.4 2.4 5.1E-05 28.5 -1.7 15 101-116 23-37 (104)
28 cd02950 TxlA TRX-like protein 50.1 2.5 5.3E-05 31.5 -1.8 15 101-116 24-38 (142)
29 cd02996 PDI_a_ERp44 PDIa famil 49.5 2.7 5.7E-05 28.8 -1.6 15 101-116 22-36 (108)
30 cd02962 TMX2 TMX2 family; comp 48.7 2.6 5.6E-05 32.7 -1.9 16 101-117 51-66 (152)
31 KOG4141 DNA repair and recombi 48.2 43 0.00093 28.9 5.1 77 65-146 37-125 (222)
32 PF13670 PepSY_2: Peptidase pr 47.7 39 0.00084 23.0 4.0 52 63-143 30-82 (83)
33 PRK10254 thioesterase; Provisi 47.7 43 0.00093 25.5 4.6 48 102-150 87-135 (137)
34 cd02956 ybbN ybbN protein fami 46.7 3.9 8.4E-05 27.0 -1.1 15 101-116 16-30 (96)
35 KOG0190 Protein disulfide isom 46.5 5.1 0.00011 37.4 -0.7 18 99-117 386-403 (493)
36 TIGR02666 moaA molybdenum cofa 44.7 17 0.00037 30.1 2.2 60 62-123 205-271 (334)
37 PF08662 eIF2A: Eukaryotic tra 44.6 39 0.00085 26.2 4.0 34 110-143 59-97 (194)
38 cd02997 PDI_a_PDIR PDIa family 42.6 3.6 7.9E-05 27.0 -1.7 16 101-117 21-36 (104)
39 PF05506 DUF756: Domain of unk 42.5 24 0.00053 24.3 2.4 17 129-146 72-88 (89)
40 PF10633 NPCBM_assoc: NPCBM-as 42.0 47 0.001 22.1 3.6 33 102-134 26-61 (78)
41 cd03001 PDI_a_P5 PDIa family, 41.8 3.6 7.9E-05 27.1 -1.8 15 101-116 22-36 (103)
42 TIGR01126 pdi_dom protein disu 40.9 4.4 9.6E-05 26.3 -1.5 15 101-116 17-31 (102)
43 PHA02448 hypothetical protein 40.6 23 0.00049 29.5 2.3 73 61-136 2-80 (192)
44 PF09910 DUF2139: Uncharacteri 39.7 21 0.00045 32.5 2.0 18 108-125 103-120 (339)
45 PF05870 PA_decarbox: Phenolic 39.4 29 0.00063 28.6 2.7 22 104-131 12-33 (159)
46 PHA02947 S-S bond formation pa 39.2 23 0.0005 30.3 2.2 33 63-99 151-184 (215)
47 PF11259 DUF3060: Protein of u 39.0 1.1E+02 0.0023 20.8 5.0 35 110-144 12-48 (61)
48 PF00085 Thioredoxin: Thioredo 37.9 3.3 7.1E-05 26.8 -2.5 16 100-116 20-35 (103)
49 PF08534 Redoxin: Redoxin; In 37.2 7.5 0.00016 27.6 -0.9 44 72-115 3-46 (146)
50 PF04359 DUF493: Protein of un 36.5 21 0.00046 24.7 1.3 40 98-137 27-66 (85)
51 PRK06518 hypothetical protein; 36.5 63 0.0014 26.1 4.2 32 104-139 19-59 (177)
52 cd02987 Phd_like_Phd Phosducin 36.3 7.8 0.00017 30.2 -1.0 15 101-116 87-101 (175)
53 cd02963 TRX_DnaJ TRX domain, D 36.1 6.2 0.00014 27.7 -1.4 15 101-116 28-42 (111)
54 TIGR01130 ER_PDI_fam protein d 35.9 6.3 0.00014 32.5 -1.6 15 101-116 22-36 (462)
55 cd02995 PDI_a_PDI_a'_C PDIa fa 35.8 5.5 0.00012 26.0 -1.6 15 101-116 22-36 (104)
56 TIGR02738 TrbB type-F conjugat 35.8 7.6 0.00017 30.0 -1.1 14 101-115 54-67 (153)
57 PF14356 DUF4403: Domain of un 35.5 1.4E+02 0.003 26.4 6.5 59 60-133 11-72 (427)
58 TIGR02286 PaaD phenylacetic ac 35.5 82 0.0018 22.0 4.2 45 102-148 64-111 (114)
59 PRK10477 outer membrane lipopr 35.3 1.1E+02 0.0024 23.6 5.2 52 94-150 42-95 (177)
60 cd02967 mauD Methylamine utili 35.2 9.8 0.00021 25.6 -0.5 15 101-116 25-39 (114)
61 PF04468 PSP1: PSP1 C-terminal 33.6 66 0.0014 22.8 3.5 22 109-130 40-61 (88)
62 PF02470 MCE: mce related prot 33.4 80 0.0017 21.0 3.7 21 110-130 28-48 (81)
63 PF12680 SnoaL_2: SnoaL-like d 32.7 1.2E+02 0.0027 18.7 4.4 33 106-140 50-83 (102)
64 PRK04998 hypothetical protein; 32.1 51 0.0011 23.4 2.7 37 99-137 33-69 (88)
65 PF07995 GSDH: Glucose / Sorbo 32.0 61 0.0013 27.3 3.6 29 108-142 303-331 (331)
66 PF13452 MaoC_dehydrat_N: N-te 31.6 1.5E+02 0.0034 20.7 5.1 40 102-141 82-129 (132)
67 cd02998 PDI_a_ERp38 PDIa famil 31.5 7.7 0.00017 25.3 -1.5 15 101-116 22-36 (105)
68 cd02992 PDI_a_QSOX PDIa family 30.8 7.4 0.00016 27.7 -1.8 15 101-116 23-37 (114)
69 PF15532 Toxin_53: Putative to 30.4 65 0.0014 24.9 3.1 26 127-152 34-72 (102)
70 COG2921 Uncharacterized conser 30.3 75 0.0016 24.1 3.4 41 97-139 31-71 (90)
71 PF07366 SnoaL: SnoaL-like pol 29.6 99 0.0021 21.3 3.7 24 120-143 90-113 (126)
72 PF12566 DUF3748: Protein of u 29.6 41 0.00089 26.8 2.0 35 96-130 52-87 (122)
73 PF06420 Mgm101p: Mitochondria 29.4 1.6E+02 0.0034 24.7 5.5 75 66-147 18-94 (171)
74 PF03147 FDX-ACB: Ferredoxin-f 29.4 69 0.0015 22.3 2.9 50 93-143 18-72 (94)
75 KOG2055 WD40 repeat protein [G 29.1 60 0.0013 31.0 3.3 44 92-141 326-369 (514)
76 cd03000 PDI_a_TMX3 PDIa family 29.0 8.6 0.00019 26.2 -1.7 14 101-115 19-32 (104)
77 cd02984 TRX_PICOT TRX domain, 28.8 7.8 0.00017 25.4 -1.8 15 101-116 18-32 (97)
78 PRK11688 hypothetical protein; 28.3 1.3E+02 0.0028 22.5 4.4 43 103-148 106-151 (154)
79 PRK13836 conjugal transfer pro 28.1 1.2E+02 0.0026 24.4 4.5 88 62-150 91-191 (220)
80 PF01333 Apocytochr_F_C: Apocy 27.8 91 0.002 24.7 3.6 30 109-143 9-38 (118)
81 PRK09570 rpoH DNA-directed RNA 27.4 60 0.0013 23.7 2.4 27 109-135 53-79 (79)
82 PLN00410 U5 snRNP protein, DIM 27.4 10 0.00022 29.6 -1.6 15 101-116 27-41 (142)
83 cd02988 Phd_like_VIAF Phosduci 26.9 15 0.00032 29.3 -0.9 15 101-116 106-120 (192)
84 PF02296 Alpha_adaptin_C: Alph 26.8 60 0.0013 24.2 2.4 29 110-142 80-108 (113)
85 PF14356 DUF4403: Domain of un 26.6 2E+02 0.0044 25.4 6.0 36 73-108 236-274 (427)
86 TIGR01068 thioredoxin thioredo 26.1 10 0.00022 24.3 -1.6 15 101-116 18-32 (101)
87 PF12528 DUF3728: Prepilin pep 25.9 1.4E+02 0.0031 21.4 4.1 36 105-142 42-78 (84)
88 PTZ00102 disulphide isomerase; 25.6 13 0.00027 31.5 -1.6 16 101-117 53-68 (477)
89 PRK10694 acyl-CoA esterase; Pr 25.5 1.9E+02 0.004 21.8 4.9 44 102-146 62-113 (133)
90 TIGR02668 moaA_archaeal probab 25.4 56 0.0012 26.5 2.2 60 62-123 200-260 (302)
91 cd07279 PX_SNX20_21_like The p 25.2 1.3E+02 0.0029 21.5 3.9 26 112-137 4-29 (112)
92 PRK00341 hypothetical protein; 25.0 76 0.0016 23.0 2.6 40 97-137 33-72 (91)
93 cd02965 HyaE HyaE family; HyaE 24.9 17 0.00037 27.3 -0.8 18 100-117 30-48 (111)
94 cd02959 ERp19 Endoplasmic reti 24.8 10 0.00022 27.5 -2.0 15 101-116 23-37 (117)
95 PF06863 DUF1254: Protein of u 24.7 62 0.0013 23.9 2.1 31 104-135 80-110 (128)
96 PF12221 HflK_N: Bacterial mem 24.3 33 0.00071 22.4 0.5 14 63-76 22-35 (42)
97 PF14605 Nup35_RRM_2: Nup53/35 24.2 83 0.0018 20.4 2.4 32 97-130 13-44 (53)
98 COG4853 Uncharacterized protei 24.1 77 0.0017 28.1 2.9 47 88-140 215-261 (264)
99 PF09684 Tail_P2_I: Phage tail 23.9 31 0.00067 25.5 0.4 53 58-111 6-58 (139)
100 TIGR00638 Mop molybdenum-pteri 23.8 1.2E+02 0.0027 19.0 3.1 29 107-141 7-36 (69)
101 PF00254 FKBP_C: FKBP-type pep 23.8 1E+02 0.0022 20.5 2.9 22 121-144 7-28 (94)
102 KOG0907 Thioredoxin [Posttrans 23.1 19 0.00042 26.4 -0.8 15 101-116 25-39 (106)
103 PF07676 PD40: WD40-like Beta 22.9 1.2E+02 0.0026 17.3 2.7 11 115-125 13-23 (39)
104 PF08402 TOBE_2: TOBE domain; 21.5 2E+02 0.0044 17.6 3.8 27 108-140 17-43 (75)
105 PF10296 DUF2404: Putative int 21.4 2.7E+02 0.0059 19.4 4.8 61 68-133 26-91 (91)
106 PF10934 DUF2634: Protein of u 21.4 1.9E+02 0.004 21.5 4.1 28 111-140 85-112 (112)
107 PF12733 Cadherin-like: Cadher 21.3 2.5E+02 0.0054 18.7 4.4 27 107-134 60-86 (88)
108 TIGR02503 type_III_SycN type I 21.1 95 0.0021 24.2 2.6 74 60-137 1-97 (119)
109 cd03065 PDI_b_Calsequestrin_N 21.1 26 0.00055 26.3 -0.5 15 101-115 30-46 (120)
110 TIGR02447 yiiD_Cterm thioester 21.0 1.9E+02 0.0042 21.4 4.2 45 102-149 77-135 (138)
111 cd05863 Ig2_VEGFR-3 Second imm 20.9 72 0.0016 21.1 1.7 56 87-147 9-64 (67)
112 cd03449 R_hydratase (R)-hydrat 20.9 2.3E+02 0.0049 19.3 4.2 45 102-146 77-124 (128)
113 PF12034 DUF3520: Domain of un 20.9 90 0.0019 25.9 2.5 20 120-139 50-69 (183)
114 cd02993 PDI_a_APS_reductase PD 20.5 15 0.00032 25.5 -1.8 15 101-116 25-39 (109)
No 1
>PF04098 Rad52_Rad22: Rad52/22 family double-strand break repair protein; InterPro: IPR007232 The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent and RecA-independent DNA recombination pathways. This family includes proteins related to Rad52. These proteins contain two helix-hairpin-helix motifs [].; GO: 0006281 DNA repair, 0006310 DNA recombination; PDB: 1KN0_I 1H2I_U.
Probab=97.54 E-value=0.00066 Score=52.10 Aligned_cols=84 Identities=21% Similarity=0.298 Sum_probs=58.0
Q ss_pred HHHHHHHhcccCCcccccccccCCc--cccccchhhhhhhhhhcc--CceeeeeeeEEE--ee-CCc----E--EEEEEE
Q 047987 64 LSEILKELNKNVPNSLIKIRVEDGF--SMKYIPWHIVNRIMNLHA--PEWSGEVRNITY--SV-DGK----T--VSVVYR 130 (153)
Q Consensus 64 LaEILrdLnKrVPD~lvktr~~~g~--s~~yIPWy~anRiL~fyA--PgW~gEVR~i~y--s~-dGk----s--VsVvyR 130 (153)
..+|.+.|.++.|..-|+.|...+. .+.||+.+.+-..+|-.. .||+-||.++.. .. ++. + +++..|
T Consensus 2 ~~~i~~~L~~~~~~~~i~~R~~~~~~~~~~yl~~~~vi~~aN~vfGfngWs~~i~~~~~~~~~~~~~~~~~~~~~~~~vr 81 (154)
T PF04098_consen 2 IGEIQEKLEKPLPPEEISWRPGSGGKSKLPYLESRKVIELANEVFGFNGWSSEIISLEQDFVEEEPGEGKYSVGYSAIVR 81 (154)
T ss_dssp HHHHHHHHH--B-TTTEEEEE-TTS--EEEEE-HHHHHHHHHHHH-TTTEEEEEEEEEEEEEEESSS--SEEEEEEEEEE
T ss_pred HHHHHHHHhCccCHHHhEecccCCCCccccccCHHHHHHHHHHHhCcCCCceEEEeeEeeeeeccCCceeEEEEEEEEEE
Confidence 4689999999999999999987643 688999999999998776 889999998877 21 122 2 344445
Q ss_pred EEEEecccceeeeccceecc
Q 047987 131 VTIYGTDAEVTSNSVNILLL 150 (153)
Q Consensus 131 VTi~GtDge~~REATGT~~l 150 (153)
||| .||. +||.+|....
T Consensus 82 itL--kdg~-~~e~~G~g~~ 98 (154)
T PF04098_consen 82 ITL--KDGT-YREDIGYGWS 98 (154)
T ss_dssp EEE--TTS--EEEEEEEEEE
T ss_pred EEE--eCCc-eeeecceEEE
Confidence 554 4777 7788887543
No 2
>PF06378 DUF1071: Protein of unknown function (DUF1071); InterPro: IPR009425 This entry is represented by Bacteriophage bIL285, Orf14. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical bacterial and phage proteins of unknown function.
Probab=96.66 E-value=0.0025 Score=51.59 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=40.3
Q ss_pred ccccccchhhhhhhhhhccCceeeeeeeEE------------EeeCCcEEEEEEEEEEEec
Q 047987 88 FSMKYIPWHIVNRIMNLHAPEWSGEVRNIT------------YSVDGKTVSVVYRVTIYGT 136 (153)
Q Consensus 88 ~s~~yIPWy~anRiL~fyAPgW~gEVR~i~------------ys~dGksVsVvyRVTi~Gt 136 (153)
..++|++|.+|-.+|.-+.|.|.++|..-. |...+....|-..|||.|.
T Consensus 20 ~~l~YLSWA~Aw~~lk~~~P~at~~i~~f~~~~~~~~~~~~p~~~t~~g~~V~v~vti~g~ 80 (164)
T PF06378_consen 20 NGLSYLSWAWAWALLKKIYPDATYEIVEFPEYDITGLPYGVPYLDTNTGYMVEVSVTIEGQ 80 (164)
T ss_pred CCCCeehHHHHHHHHHHhCCCCeEEEEECCCCCCCCCccccceecCCceEEEEEEEEECCE
Confidence 467999999999999999999999997632 5555556778999999664
No 3
>TIGR00607 rad52 recombination protein rad52. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.66 E-value=0.0052 Score=49.89 Aligned_cols=80 Identities=25% Similarity=0.311 Sum_probs=57.8
Q ss_pred HHHHhcccCCcccccccccC-Cccccccchhhhhhhhh--hccCceeeeeeeEEEe----eCCc---EEEEEEEEEEEec
Q 047987 67 ILKELNKNVPNSLIKIRVED-GFSMKYIPWHIVNRIMN--LHAPEWSGEVRNITYS----VDGK---TVSVVYRVTIYGT 136 (153)
Q Consensus 67 ILrdLnKrVPD~lvktr~~~-g~s~~yIPWy~anRiL~--fyAPgW~gEVR~i~ys----~dGk---sVsVvyRVTi~Gt 136 (153)
|-..|+|+++.-.|.+|... |..+.|||++.+-.+-| |=-.||+-+|.++... .+|+ .++++.|||+.
T Consensus 2 iq~~l~~~lgpe~is~R~g~gg~kv~Yieg~k~i~lANeiFGFnGWSs~I~~~~vd~~de~~~k~~vg~saiVRVtLk-- 79 (161)
T TIGR00607 2 IQKALRQKLGPEYISSRSGGGGQKVCYIEGWKVINLANEIFGYNGWSHSITQQNVDFVDENNGKFSVGVCAIVRVTLK-- 79 (161)
T ss_pred hhHHhhcccCchheeeccCCCCceEEeccHHHHHHHHHHhcCCCCceeeeeecccceecccCCcEEEEEEEEEEEEEc--
Confidence 45679999999999999775 67899999997654444 3347999999877431 1222 25667777774
Q ss_pred ccceeeeccceec
Q 047987 137 DAEVTSNSVNILL 149 (153)
Q Consensus 137 Dge~~REATGT~~ 149 (153)
|| .+||..|.-.
T Consensus 80 DG-t~~EdiG~G~ 91 (161)
T TIGR00607 80 DG-SYHEDVGYGV 91 (161)
T ss_pred CC-cEeeccccee
Confidence 88 5899988643
No 4
>PF12991 DUF3875: Domain of unknown function, B. Theta Gene description (DUF3875); InterPro: IPR024451 This domain of unknown function is found in proteins from Bacteroidetes, including the conjugation system ATPase, TraG.
Probab=67.84 E-value=4.8 Score=27.99 Aligned_cols=19 Identities=26% Similarity=0.562 Sum_probs=16.5
Q ss_pred eeEEEeeCCcEEEEEEEEEE
Q 047987 114 RNITYSVDGKTVSVVYRVTI 133 (153)
Q Consensus 114 R~i~ys~dGksVsVvyRVTi 133 (153)
-+.++|.||+ +||.|+|.+
T Consensus 20 ~~civSk~gD-iTv~f~v~L 38 (54)
T PF12991_consen 20 HGCIVSKNGD-ITVAFRVEL 38 (54)
T ss_pred cCcEEecCCC-EEEEEEecC
Confidence 4688999998 999999965
No 5
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=66.77 E-value=18 Score=25.27 Aligned_cols=47 Identities=21% Similarity=0.209 Sum_probs=34.0
Q ss_pred hhhccCceeeeeeeEE-EeeCCcEEEEEEEEEEEecccceeeeccceec
Q 047987 102 MNLHAPEWSGEVRNIT-YSVDGKTVSVVYRVTIYGTDAEVTSNSVNILL 149 (153)
Q Consensus 102 L~fyAPgW~gEVR~i~-ys~dGksVsVvyRVTi~GtDge~~REATGT~~ 149 (153)
.+|..|...|+|+-.. .-.-|+++ .++++.|+..||++.=.++||-.
T Consensus 69 i~f~~p~~~g~l~a~a~v~~~gr~~-~~~~~~i~~~~g~~va~~~~t~~ 116 (117)
T TIGR00369 69 ANHLRPAREGKVRAIAQVVHLGRQT-GVAEIEIVDEQGRLCALSRGTTA 116 (117)
T ss_pred eeeccccCCCEEEEEEEEEecCceE-EEEEEEEECCCCCEEEEEEEEEc
Confidence 4678888888554321 12347666 88999999999999988888754
No 6
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=66.16 E-value=1.3 Score=35.62 Aligned_cols=16 Identities=25% Similarity=0.814 Sum_probs=13.5
Q ss_pred hhhhccCceeeeeeeEE
Q 047987 101 IMNLHAPEWSGEVRNIT 117 (153)
Q Consensus 101 iL~fyAPgW~gEVR~i~ 117 (153)
|.+|||+ |||.|+.+.
T Consensus 65 lVdF~A~-WCgPCk~l~ 80 (150)
T KOG0910|consen 65 LVDFHAE-WCGPCKMLG 80 (150)
T ss_pred EEEEecC-cCccHhHhh
Confidence 7899996 999998763
No 7
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=65.30 E-value=1.2 Score=30.79 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=12.1
Q ss_pred hhhhccCceeeeeeeE
Q 047987 101 IMNLHAPEWSGEVRNI 116 (153)
Q Consensus 101 iL~fyAPgW~gEVR~i 116 (153)
+++|||| |||-|+.+
T Consensus 19 vv~F~a~-wC~~C~~~ 33 (103)
T cd02985 19 VLEFALK-HSGPSVKI 33 (103)
T ss_pred EEEEECC-CCHhHHHH
Confidence 6889988 99988754
No 8
>PRK02047 hypothetical protein; Provisional
Probab=64.04 E-value=8 Score=27.94 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=32.8
Q ss_pred hhhhhhhhccCceeeeeeeEEEeeCCcEEEEEEEEEEEecc
Q 047987 97 IVNRIMNLHAPEWSGEVRNITYSVDGKTVSVVYRVTIYGTD 137 (153)
Q Consensus 97 ~anRiL~fyAPgW~gEVR~i~ys~dGksVsVvyRVTi~GtD 137 (153)
.+..++.-|+|+...+.-.+--|..||-+||..+|++...|
T Consensus 32 ~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~s~e 72 (91)
T PRK02047 32 TIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRATSRE 72 (91)
T ss_pred HHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEECCHH
Confidence 45778889999988888788889999988887777766544
No 9
>PRK00907 hypothetical protein; Provisional
Probab=63.13 E-value=8.5 Score=28.35 Aligned_cols=40 Identities=23% Similarity=0.155 Sum_probs=31.9
Q ss_pred hhhhhhhccCceeeeeeeEEEeeCCcEEEEEEEEEEEecc
Q 047987 98 VNRIMNLHAPEWSGEVRNITYSVDGKTVSVVYRVTIYGTD 137 (153)
Q Consensus 98 anRiL~fyAPgW~gEVR~i~ys~dGksVsVvyRVTi~GtD 137 (153)
+-.++.-|||+..-+-..+--|..||-++|+..|+.++.+
T Consensus 34 V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats~e 73 (92)
T PRK00907 34 LPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAESRE 73 (92)
T ss_pred HHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECCHH
Confidence 5567889999988888778889999988887777766543
No 10
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 3EBW_B 1QWD_A 2ACO_A 3MBT_A.
Probab=62.52 E-value=11 Score=27.82 Aligned_cols=51 Identities=20% Similarity=0.279 Sum_probs=32.3
Q ss_pred hhhhhhhhhhccCceeeeeeeEEEe--eCCcEEEEEEEEEEEecccceeeeccceeccc
Q 047987 95 WHIVNRIMNLHAPEWSGEVRNITYS--VDGKTVSVVYRVTIYGTDAEVTSNSVNILLLI 151 (153)
Q Consensus 95 Wy~anRiL~fyAPgW~gEVR~i~ys--~dGksVsVvyRVTi~GtDge~~REATGT~~l~ 151 (153)
||.+.|+=+++-.+.+.- ...|+ +|| ++.|.++-.. .||+. .++.|++...
T Consensus 10 WYEiar~p~~~q~~~~~~--~a~Yt~~~dg-~i~V~n~~~~--~~g~~-~~~~g~a~~~ 62 (143)
T PF08212_consen 10 WYEIARYPNFFQRGCVCV--TAEYTLRDDG-TISVRNSCRR--PDGKI-KTIRGTATVV 62 (143)
T ss_dssp EEEEEEE--CCCTT-ECE--EEEEEE-TTS--EEEEEEEEE--TTTCC-CEEEEEEEES
T ss_pred eeEEEEECCcccceeeee--eeeEEEcCCC-EEEEEEEEEc--CCCCE-EEEEeEEEEc
Confidence 999999877777655443 35555 467 6888887765 78854 4467777654
No 11
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=62.31 E-value=1.1 Score=29.98 Aligned_cols=15 Identities=20% Similarity=0.742 Sum_probs=12.3
Q ss_pred hhhhccCceeeeeeeE
Q 047987 101 IMNLHAPEWSGEVRNI 116 (153)
Q Consensus 101 iL~fyAPgW~gEVR~i 116 (153)
++.|||| ||+-|+.+
T Consensus 20 lv~f~a~-wC~~C~~~ 34 (101)
T cd02994 20 MIEFYAP-WCPACQQL 34 (101)
T ss_pred EEEEECC-CCHHHHHH
Confidence 7999998 99988653
No 12
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=61.93 E-value=39 Score=21.53 Aligned_cols=31 Identities=23% Similarity=0.045 Sum_probs=21.7
Q ss_pred eeeeeeeEEEeeCCcEEEEEEEEEEEecccc
Q 047987 109 WSGEVRNITYSVDGKTVSVVYRVTIYGTDAE 139 (153)
Q Consensus 109 W~gEVR~i~ys~dGksVsVvyRVTi~GtDge 139 (153)
..++..++.+..+|++..|.|+.++++..+.
T Consensus 55 ~~~~~~~~~v~~~gd~a~~~~~~~~~~~~~g 85 (107)
T PF14534_consen 55 SSIKFEDVEVRVLGDTAVVRGRWTFTWRGDG 85 (107)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEETTTT
T ss_pred ceEEEEEEEEEEECCEEEEEEEEEEEEecCC
Confidence 4444444555555888999999999988654
No 13
>PHA02278 thioredoxin-like protein
Probab=61.59 E-value=1.3 Score=31.91 Aligned_cols=16 Identities=13% Similarity=0.206 Sum_probs=11.9
Q ss_pred hhhhccCceeeeeeeEE
Q 047987 101 IMNLHAPEWSGEVRNIT 117 (153)
Q Consensus 101 iL~fyAPgW~gEVR~i~ 117 (153)
++.|||| |||-|+.+.
T Consensus 18 vV~F~A~-WCgpCk~m~ 33 (103)
T PHA02278 18 IVMITQD-NCGKCEILK 33 (103)
T ss_pred EEEEECC-CCHHHHhHH
Confidence 5678886 999887553
No 14
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=61.27 E-value=1.2 Score=29.33 Aligned_cols=15 Identities=27% Similarity=0.941 Sum_probs=11.9
Q ss_pred hhhhccCceeeeeeeE
Q 047987 101 IMNLHAPEWSGEVRNI 116 (153)
Q Consensus 101 iL~fyAPgW~gEVR~i 116 (153)
++.|||| ||+.++.+
T Consensus 20 lv~f~a~-wC~~C~~~ 34 (102)
T cd03005 20 FVKFFAP-WCGHCKRL 34 (102)
T ss_pred EEEEECC-CCHHHHHh
Confidence 6788887 99988754
No 15
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=59.71 E-value=1.4 Score=29.60 Aligned_cols=16 Identities=31% Similarity=0.947 Sum_probs=12.9
Q ss_pred hhhhhccCceeeeeeeE
Q 047987 100 RIMNLHAPEWSGEVRNI 116 (153)
Q Consensus 100 RiL~fyAPgW~gEVR~i 116 (153)
-++.|||| ||+.|+.+
T Consensus 21 ~lv~f~a~-wC~~C~~~ 36 (109)
T cd03002 21 TLVEFYAP-WCGHCKNL 36 (109)
T ss_pred EEEEEECC-CCHHHHhh
Confidence 47899997 99988754
No 16
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=58.85 E-value=3.4 Score=33.34 Aligned_cols=44 Identities=20% Similarity=0.357 Sum_probs=34.1
Q ss_pred HhcccCCccccccccc---CCccccccchhhhh-----hhhhhccCceeeeee
Q 047987 70 ELNKNVPNSLIKIRVE---DGFSMKYIPWHIVN-----RIMNLHAPEWSGEVR 114 (153)
Q Consensus 70 dLnKrVPD~lvktr~~---~g~s~~yIPWy~an-----RiL~fyAPgW~gEVR 114 (153)
.|++++|.--|..+-| +|-.+.|=||-.+. |++||+| +||.-||
T Consensus 24 ~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~A-swc~~c~ 75 (184)
T TIGR01626 24 QVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIA-GRTSAKE 75 (184)
T ss_pred hcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEe-cCCChhh
Confidence 5789999887776632 45567899998774 8999987 8998775
No 17
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=58.64 E-value=22 Score=25.95 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=25.1
Q ss_pred eeeeeeeEEEeeCCcEEEEEEEEEEEecc
Q 047987 109 WSGEVRNITYSVDGKTVSVVYRVTIYGTD 137 (153)
Q Consensus 109 W~gEVR~i~ys~dGksVsVvyRVTi~GtD 137 (153)
|.++|+ ++|-.||+.+++.=.|.+++-|
T Consensus 42 y~Y~v~-a~~~~dG~~~t~~~~V~vrAGd 69 (75)
T TIGR03000 42 YEYTVT-AEYDRDGRILTRTRTVVVRAGD 69 (75)
T ss_pred EEEEEE-EEEecCCcEEEEEEEEEEcCCc
Confidence 999996 7888899999999999999866
No 18
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.82 E-value=9.3 Score=35.16 Aligned_cols=61 Identities=25% Similarity=0.356 Sum_probs=45.0
Q ss_pred ccccccccCCccccccchhhhhhhhhhccCceeeeeeeEEEeeCCcEEEEEEEEEEEecccceeeeccc
Q 047987 78 SLIKIRVEDGFSMKYIPWHIVNRIMNLHAPEWSGEVRNITYSVDGKTVSVVYRVTIYGTDAEVTSNSVN 146 (153)
Q Consensus 78 ~lvktr~~~g~s~~yIPWy~anRiL~fyAPgW~gEVR~i~ys~dGksVsVvyRVTi~GtDge~~REATG 146 (153)
+++-+--.|| .++.+-|=..+-+|++ ++=++||+|+.||+|||.+ ++|-+.-++++--.+|
T Consensus 157 s~latgg~dg-~lRv~~~Ps~~t~l~e--~~~~~eV~DL~FS~dgk~l-----asig~d~~~VW~~~~g 217 (398)
T KOG0771|consen 157 SKLATGGTDG-TLRVWEWPSMLTILEE--IAHHAEVKDLDFSPDGKFL-----ASIGADSARVWSVNTG 217 (398)
T ss_pred CEeeeccccc-eEEEEecCcchhhhhh--HhhcCccccceeCCCCcEE-----EEecCCceEEEEeccC
Confidence 4444433444 3678888888888876 4568999999999999855 5677777788877777
No 19
>PRK09381 trxA thioredoxin; Provisional
Probab=56.50 E-value=1.7 Score=29.61 Aligned_cols=15 Identities=27% Similarity=0.769 Sum_probs=12.7
Q ss_pred hhhhccCceeeeeeeE
Q 047987 101 IMNLHAPEWSGEVRNI 116 (153)
Q Consensus 101 iL~fyAPgW~gEVR~i 116 (153)
++.||+| ||+.|+.+
T Consensus 25 vv~f~~~-~C~~C~~~ 39 (109)
T PRK09381 25 LVDFWAE-WCGPCKMI 39 (109)
T ss_pred EEEEECC-CCHHHHHH
Confidence 7889998 99988766
No 20
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=53.62 E-value=1.9 Score=31.61 Aligned_cols=15 Identities=20% Similarity=0.585 Sum_probs=9.6
Q ss_pred hhhhccCceeeeeeeE
Q 047987 101 IMNLHAPEWSGEVRNI 116 (153)
Q Consensus 101 iL~fyAPgW~gEVR~i 116 (153)
++.|||| |||-++.+
T Consensus 33 lV~FyA~-WC~~Ck~l 47 (113)
T cd03006 33 LVMYYAP-WDAQSQAA 47 (113)
T ss_pred EEEEECC-CCHHHHHH
Confidence 4567766 77766544
No 21
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=52.57 E-value=2.1 Score=29.85 Aligned_cols=16 Identities=13% Similarity=0.196 Sum_probs=11.3
Q ss_pred hhhhccCceeeeeeeEE
Q 047987 101 IMNLHAPEWSGEVRNIT 117 (153)
Q Consensus 101 iL~fyAPgW~gEVR~i~ 117 (153)
+++|||| ||+-|+.+.
T Consensus 22 lV~F~a~-WC~~C~~~~ 37 (100)
T cd02999 22 AVLFYAS-WCPFSASFR 37 (100)
T ss_pred EEEEECC-CCHHHHhHh
Confidence 5677775 888777654
No 22
>COG5055 RAD52 Recombination DNA repair protein (RAD52 pathway) [DNA replication, recombination, and repair]
Probab=52.19 E-value=34 Score=31.44 Aligned_cols=74 Identities=26% Similarity=0.423 Sum_probs=47.8
Q ss_pred HHhcccCCccccccccc-CCccccccchhh----hhhhhhhccCceeeeeeeEEEe-----eCCc---EEEEEEEEEEEe
Q 047987 69 KELNKNVPNSLIKIRVE-DGFSMKYIPWHI----VNRIMNLHAPEWSGEVRNITYS-----VDGK---TVSVVYRVTIYG 135 (153)
Q Consensus 69 rdLnKrVPD~lvktr~~-~g~s~~yIPWy~----anRiL~fyAPgW~gEVR~i~ys-----~dGk---sVsVvyRVTi~G 135 (153)
.-|-++.=.-.|..|.. +|.++.|||=+. ||+|.-| .||+-|||+|..- .++| -+++..||||.
T Consensus 31 s~L~rklgpeYis~R~G~g~~~iayIegw~~I~lANeiFGf--nGWss~I~sv~id~~ee~~e~k~svg~saiVRVTLK- 107 (375)
T COG5055 31 SKLERKLGPEYISRRSGFGGSSIAYIEGWKAIELANEIFGF--NGWSSEIRSVEIDYCEEFEEKKFSVGASAIVRVTLK- 107 (375)
T ss_pred HHHHHHhccHhhccccCCCCCceeeechhHHHHHHHHhhCc--CccccceeeeeeeccccccccceeeeeEEEEEEEec-
Confidence 34444554455666666 679999999553 6888554 8999999998642 3343 14456677774
Q ss_pred cccceeeeccce
Q 047987 136 TDAEVTSNSVNI 147 (153)
Q Consensus 136 tDge~~REATGT 147 (153)
||. |||-.|-
T Consensus 108 -DGt-y~EdiGy 117 (375)
T COG5055 108 -DGT-YREDIGY 117 (375)
T ss_pred -CCc-ccccccc
Confidence 664 6665553
No 23
>PTZ00051 thioredoxin; Provisional
Probab=51.44 E-value=2.3 Score=28.09 Aligned_cols=15 Identities=33% Similarity=0.820 Sum_probs=11.4
Q ss_pred hhhhccCceeeeeeeE
Q 047987 101 IMNLHAPEWSGEVRNI 116 (153)
Q Consensus 101 iL~fyAPgW~gEVR~i 116 (153)
++.||+| ||+.++.+
T Consensus 22 li~f~~~-~C~~C~~~ 36 (98)
T PTZ00051 22 IVDFYAE-WCGPCKRI 36 (98)
T ss_pred EEEEECC-CCHHHHHH
Confidence 5788887 88888754
No 24
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=51.25 E-value=2.3 Score=29.31 Aligned_cols=15 Identities=13% Similarity=0.705 Sum_probs=11.6
Q ss_pred hhhhccCceeeeeeeE
Q 047987 101 IMNLHAPEWSGEVRNI 116 (153)
Q Consensus 101 iL~fyAPgW~gEVR~i 116 (153)
++.|||| ||+-|+.+
T Consensus 21 vv~F~a~-wC~~Ck~~ 35 (102)
T cd02948 21 VVDVYQE-WCGPCKAV 35 (102)
T ss_pred EEEEECC-cCHhHHHH
Confidence 6788886 89887755
No 25
>PRK10293 acyl-CoA esterase; Provisional
Probab=51.11 E-value=37 Score=25.60 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=35.2
Q ss_pred hhhccCceeeeeeeEEE-eeCCcEEEEEEEEEEEecccceeeeccceec
Q 047987 102 MNLHAPEWSGEVRNITY-SVDGKTVSVVYRVTIYGTDAEVTSNSVNILL 149 (153)
Q Consensus 102 L~fyAPgW~gEVR~i~y-s~dGksVsVvyRVTi~GtDge~~REATGT~~ 149 (153)
.||-.|...|+++-... --.|+++ .+++++|+-.||++.=.++||..
T Consensus 87 infl~p~~~g~l~a~a~vv~~Gr~~-~~~~~~v~d~~g~l~A~~~~t~~ 134 (136)
T PRK10293 87 ANHVRSAREGRVRGVCKPLHLGSRH-QVWQIEIFDEKGRLCCSSRLTTA 134 (136)
T ss_pred eEEecccCCceEEEEEEEEecCCCE-EEEEEEEEeCCCCEEEEEEEEEE
Confidence 46778999888765432 2247766 78999999999999988888754
No 26
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=50.64 E-value=9.8 Score=30.77 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=13.2
Q ss_pred EEEEEEEEEeccccee
Q 047987 126 SVVYRVTIYGTDAEVT 141 (153)
Q Consensus 126 sVvyRVTi~GtDge~~ 141 (153)
.--|.||++|+||++.
T Consensus 47 ~~~ytVtV~G~dGs~~ 62 (139)
T PF04881_consen 47 PEWYTVTVQGPDGSIR 62 (139)
T ss_pred CcceEEEEECCCCcce
Confidence 3468999999999874
No 27
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=50.38 E-value=2.4 Score=28.53 Aligned_cols=15 Identities=27% Similarity=0.906 Sum_probs=11.4
Q ss_pred hhhhccCceeeeeeeE
Q 047987 101 IMNLHAPEWSGEVRNI 116 (153)
Q Consensus 101 iL~fyAPgW~gEVR~i 116 (153)
++.|||| ||+-|+.+
T Consensus 23 ~v~f~a~-wC~~C~~~ 37 (104)
T cd03004 23 LVDFYAP-WCGPCQAL 37 (104)
T ss_pred EEEEECC-CCHHHHHH
Confidence 6788886 99888643
No 28
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=50.09 E-value=2.5 Score=31.54 Aligned_cols=15 Identities=13% Similarity=0.512 Sum_probs=11.6
Q ss_pred hhhhccCceeeeeeeE
Q 047987 101 IMNLHAPEWSGEVRNI 116 (153)
Q Consensus 101 iL~fyAPgW~gEVR~i 116 (153)
|++|||| ||+-|+.+
T Consensus 24 vV~F~A~-WC~~C~~~ 38 (142)
T cd02950 24 LVEFYAD-WCTVCQEM 38 (142)
T ss_pred EEEEECC-cCHHHHHh
Confidence 6788888 88877654
No 29
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=49.55 E-value=2.7 Score=28.77 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=11.5
Q ss_pred hhhhccCceeeeeeeE
Q 047987 101 IMNLHAPEWSGEVRNI 116 (153)
Q Consensus 101 iL~fyAPgW~gEVR~i 116 (153)
++.|||| ||+-++.+
T Consensus 22 lv~F~a~-wC~~C~~~ 36 (108)
T cd02996 22 LVNFYAD-WCRFSQML 36 (108)
T ss_pred EEEEECC-CCHHHHhh
Confidence 6788888 88877755
No 30
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=48.72 E-value=2.6 Score=32.66 Aligned_cols=16 Identities=25% Similarity=0.619 Sum_probs=13.0
Q ss_pred hhhhccCceeeeeeeEE
Q 047987 101 IMNLHAPEWSGEVRNIT 117 (153)
Q Consensus 101 iL~fyAPgW~gEVR~i~ 117 (153)
+++|||| ||+.++.+.
T Consensus 51 vV~Fya~-wC~~Ck~l~ 66 (152)
T cd02962 51 LVEFFTT-WSPECVNFA 66 (152)
T ss_pred EEEEECC-CCHHHHHHH
Confidence 7889999 999887653
No 31
>KOG4141 consensus DNA repair and recombination protein RAD52/RAD22 [Replication, recombination and repair]
Probab=48.20 E-value=43 Score=28.95 Aligned_cols=77 Identities=27% Similarity=0.412 Sum_probs=51.6
Q ss_pred HHHHHHhcccCCccccccccc-CCccccccchhh----hhhhhhhccCceeeeeeeEEEe----eCCc---EEEEEEEEE
Q 047987 65 SEILKELNKNVPNSLIKIRVE-DGFSMKYIPWHI----VNRIMNLHAPEWSGEVRNITYS----VDGK---TVSVVYRVT 132 (153)
Q Consensus 65 aEILrdLnKrVPD~lvktr~~-~g~s~~yIPWy~----anRiL~fyAPgW~gEVR~i~ys----~dGk---sVsVvyRVT 132 (153)
+.|=+-|.++.=.-.|..|.. .|.++.||+=|. ||+|. --.||+-+|++|..- .+|| -|++..|||
T Consensus 37 ~~iqk~L~~~lgpeYiS~R~g~gg~~v~yIegw~vI~lANeiF--GyNGWs~sI~~~~vd~~d~~~~k~~vg~~a~VrVt 114 (222)
T KOG4141|consen 37 QAIQKKLRQKLGPEYISSRMGGGGQSVCYIEGWRVINLANEIF--GYNGWSSSITSVNVDFVDEEEGKFSVGVSAIVRVT 114 (222)
T ss_pred HHHHHHHHHHhccHhhhccccCCCceeEEecchHHHHHHHHHh--CcCcccccceeeecceeccccCeEEEeEEEEEEEE
Confidence 345566777776666777765 578899999775 57885 458999999987532 2333 156678888
Q ss_pred EEecccceeeeccc
Q 047987 133 IYGTDAEVTSNSVN 146 (153)
Q Consensus 133 i~GtDge~~REATG 146 (153)
|. ||. |||-.|
T Consensus 115 Lk--DGt-yhEDiG 125 (222)
T KOG4141|consen 115 LK--DGT-YHEDIG 125 (222)
T ss_pred Ee--cCc-cccccc
Confidence 85 554 444333
No 32
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=47.74 E-value=39 Score=23.00 Aligned_cols=52 Identities=23% Similarity=0.341 Sum_probs=32.5
Q ss_pred hHHHHHHHhcccCCcccccccc-cCCccccccchhhhhhhhhhccCceeeeeeeEEEeeCCcEEEEEEEEEEEeccccee
Q 047987 63 PLSEILKELNKNVPNSLIKIRV-EDGFSMKYIPWHIVNRIMNLHAPEWSGEVRNITYSVDGKTVSVVYRVTIYGTDAEVT 141 (153)
Q Consensus 63 PLaEILrdLnKrVPD~lvktr~-~~g~s~~yIPWy~anRiL~fyAPgW~gEVR~i~ys~dGksVsVvyRVTi~GtDge~~ 141 (153)
|.++|.+-|...=. .+.+.+. ++| ||||. ....||+.+ -|.|-...|++.
T Consensus 30 ~~~~~~~~l~~~G~-~v~~ve~~~~g----------------------~yev~--~~~~dG~~~----ev~vD~~tG~V~ 80 (83)
T PF13670_consen 30 SIEQAVAKLEAQGY-QVREVEFDDDG----------------------CYEVE--ARDKDGKKV----EVYVDPATGEVV 80 (83)
T ss_pred CHHHHHHHHHhcCC-ceEEEEEcCCC----------------------EEEEE--EEECCCCEE----EEEEcCCCCeEe
Confidence 77888887777555 6666655 334 25664 466677644 555667777766
Q ss_pred ee
Q 047987 142 SN 143 (153)
Q Consensus 142 RE 143 (153)
++
T Consensus 81 ~~ 82 (83)
T PF13670_consen 81 KE 82 (83)
T ss_pred ec
Confidence 53
No 33
>PRK10254 thioesterase; Provisional
Probab=47.69 E-value=43 Score=25.47 Aligned_cols=48 Identities=13% Similarity=0.177 Sum_probs=35.3
Q ss_pred hhhccCceeeeeeeEEE-eeCCcEEEEEEEEEEEecccceeeeccceecc
Q 047987 102 MNLHAPEWSGEVRNITY-SVDGKTVSVVYRVTIYGTDAEVTSNSVNILLL 150 (153)
Q Consensus 102 L~fyAPgW~gEVR~i~y-s~dGksVsVvyRVTi~GtDge~~REATGT~~l 150 (153)
.||..|.+.|.++-... ---|+++ .++++.|+-.||++.=.+++|..+
T Consensus 87 in~Lrp~~~g~l~a~a~vi~~Gr~~-~v~~~~v~d~~g~l~a~~~~t~~i 135 (137)
T PRK10254 87 ATHHRPVSEGKVRGVCQPLHLGRQN-QSWEIVVFDEQGRRCCTCRLGTAV 135 (137)
T ss_pred eEEeccCcCCeEEEEEEEEecCcCE-EEEEEEEEcCCCCEEEEEEEEEEE
Confidence 36778999888764322 1237666 889999999999999888877643
No 34
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=46.72 E-value=3.9 Score=26.98 Aligned_cols=15 Identities=20% Similarity=0.490 Sum_probs=10.4
Q ss_pred hhhhccCceeeeeeeE
Q 047987 101 IMNLHAPEWSGEVRNI 116 (153)
Q Consensus 101 iL~fyAPgW~gEVR~i 116 (153)
++.|||| ||+.|+.+
T Consensus 16 lv~f~a~-wC~~C~~~ 30 (96)
T cd02956 16 VVDFWAP-RSPPSKEL 30 (96)
T ss_pred EEEEECC-CChHHHHH
Confidence 5677774 88887744
No 35
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=46.49 E-value=5.1 Score=37.38 Aligned_cols=18 Identities=22% Similarity=0.785 Sum_probs=15.7
Q ss_pred hhhhhhccCceeeeeeeEE
Q 047987 99 NRIMNLHAPEWSGEVRNIT 117 (153)
Q Consensus 99 nRiL~fyAPgW~gEVR~i~ 117 (153)
|..+.|||| |||-|-...
T Consensus 386 dVLvEfyAP-WCgHCk~la 403 (493)
T KOG0190|consen 386 DVLVEFYAP-WCGHCKALA 403 (493)
T ss_pred ceEEEEcCc-ccchhhhhh
Confidence 678999999 999887776
No 36
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=44.66 E-value=17 Score=30.08 Aligned_cols=60 Identities=22% Similarity=0.311 Sum_probs=37.2
Q ss_pred hhHHHHHHHhcccCCccccc--ccccCCccccc---cchhh--hhhhhhhccCceeeeeeeEEEeeCCc
Q 047987 62 RPLSEILKELNKNVPNSLIK--IRVEDGFSMKY---IPWHI--VNRIMNLHAPEWSGEVRNITYSVDGK 123 (153)
Q Consensus 62 RPLaEILrdLnKrVPD~lvk--tr~~~g~s~~y---IPWy~--anRiL~fyAPgW~gEVR~i~ys~dGk 123 (153)
.+.+||++.|.+..++ +.+ .+...|.+-.| +|.+. +-=|-... ..||+.+--+-.++||+
T Consensus 205 ~~~~ei~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ig~i~~~s-~~fC~~cnr~r~t~dG~ 271 (334)
T TIGR02666 205 VSADEILERLEQAFGP-LEPVPSPRGNGPAPAYRWRLPGGKGRIGFISPVS-DPFCGTCNRLRLTADGK 271 (334)
T ss_pred cCHHHHHHHHHhhccc-ceecCcCCCCCCceeeeeecCCCCeEEEEEccCC-cccccccCEEEEccCCC
Confidence 3688999999998865 222 12223444444 45532 22233333 44999999999999997
No 37
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=44.61 E-value=39 Score=26.24 Aligned_cols=34 Identities=24% Similarity=0.615 Sum_probs=26.7
Q ss_pred eeeeeeEEEeeCCcEEEEEE-----EEEEEecccceeee
Q 047987 110 SGEVRNITYSVDGKTVSVVY-----RVTIYGTDAEVTSN 143 (153)
Q Consensus 110 ~gEVR~i~ys~dGksVsVvy-----RVTi~GtDge~~RE 143 (153)
.|.|.++.++|||+...|+| +|+|+-.+++...+
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~ 97 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFS 97 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEe
Confidence 35699999999999988876 68888777665544
No 38
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=42.58 E-value=3.6 Score=27.00 Aligned_cols=16 Identities=25% Similarity=0.821 Sum_probs=12.8
Q ss_pred hhhhccCceeeeeeeEE
Q 047987 101 IMNLHAPEWSGEVRNIT 117 (153)
Q Consensus 101 iL~fyAPgW~gEVR~i~ 117 (153)
++.|||| ||+.++...
T Consensus 21 ~v~f~a~-wC~~C~~~~ 36 (104)
T cd02997 21 LVMFYAP-WCGHCKKMK 36 (104)
T ss_pred EEEEECC-CCHHHHHhC
Confidence 4889998 999888763
No 39
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=42.49 E-value=24 Score=24.29 Aligned_cols=17 Identities=18% Similarity=0.374 Sum_probs=15.2
Q ss_pred EEEEEEecccceeeeccc
Q 047987 129 YRVTIYGTDAEVTSNSVN 146 (153)
Q Consensus 129 yRVTi~GtDge~~REATG 146 (153)
|-++|+|.+| +.|.-.|
T Consensus 72 YDl~v~~~~~-F~rr~aG 88 (89)
T PF05506_consen 72 YDLTVTGPNG-FLRRFAG 88 (89)
T ss_pred EEEEEEcCCC-EEEEecC
Confidence 7889999999 9998877
No 40
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=42.02 E-value=47 Score=22.09 Aligned_cols=33 Identities=24% Similarity=0.537 Sum_probs=19.4
Q ss_pred hhhccC-cee--eeeeeEEEeeCCcEEEEEEEEEEE
Q 047987 102 MNLHAP-EWS--GEVRNITYSVDGKTVSVVYRVTIY 134 (153)
Q Consensus 102 L~fyAP-gW~--gEVR~i~ys~dGksVsVvyRVTi~ 134 (153)
|++-+| ||. ..-..+..-+-|.++++.++||+-
T Consensus 26 ~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp 61 (78)
T PF10633_consen 26 LSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVP 61 (78)
T ss_dssp EEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-
T ss_pred EEEeCCCCccccCCccccccCCCCCEEEEEEEEECC
Confidence 445567 599 444455567789999999999874
No 41
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=41.77 E-value=3.6 Score=27.06 Aligned_cols=15 Identities=33% Similarity=1.015 Sum_probs=10.8
Q ss_pred hhhhccCceeeeeeeE
Q 047987 101 IMNLHAPEWSGEVRNI 116 (153)
Q Consensus 101 iL~fyAPgW~gEVR~i 116 (153)
++.||+| ||+.++.+
T Consensus 22 lv~f~a~-~C~~C~~~ 36 (103)
T cd03001 22 LVEFYAP-WCGHCKNL 36 (103)
T ss_pred EEEEECC-CCHHHHHH
Confidence 5677875 88877654
No 42
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=40.94 E-value=4.4 Score=26.28 Aligned_cols=15 Identities=33% Similarity=1.015 Sum_probs=11.3
Q ss_pred hhhhccCceeeeeeeE
Q 047987 101 IMNLHAPEWSGEVRNI 116 (153)
Q Consensus 101 iL~fyAPgW~gEVR~i 116 (153)
++.||+| ||+.++.+
T Consensus 17 ~i~f~~~-~C~~c~~~ 31 (102)
T TIGR01126 17 LVEFYAP-WCGHCKNL 31 (102)
T ss_pred EEEEECC-CCHHHHhh
Confidence 6778887 88888753
No 43
>PHA02448 hypothetical protein
Probab=40.59 E-value=23 Score=29.53 Aligned_cols=73 Identities=22% Similarity=0.412 Sum_probs=56.3
Q ss_pred chhHHHHHHHhcccCCcccccccccCCccccccch-hhhhhhhhhccCceeeeeeeEEEeeCCcEE-----EEEEEEEEE
Q 047987 61 SRPLSEILKELNKNVPNSLIKIRVEDGFSMKYIPW-HIVNRIMNLHAPEWSGEVRNITYSVDGKTV-----SVVYRVTIY 134 (153)
Q Consensus 61 tRPLaEILrdLnKrVPD~lvktr~~~g~s~~yIPW-y~anRiL~fyAPgW~gEVR~i~ys~dGksV-----sVvyRVTi~ 134 (153)
+.|=+|=|..|+++.|.+-|.+-.++|..++|+-- |...|.|+. -|-|.||- +.|-.||--. -+--|+|+-
T Consensus 2 sepdveglaklrepfppnqigklpkggi~ld~~gh~~lt~r~l~~-dplwtwep--~a~~~~glp~~d~~gglwirlt~~ 78 (192)
T PHA02448 2 SEPDVEGLAKLREPFPPNQIGKLPKGGITLDFLGHGYLTARFLDV-DPLWTWEP--FAVGDNGLPLLDEHGGLWIRLTLC 78 (192)
T ss_pred CccchhHHHHhcCCCChhhhccCCCCceeEEecchhhhhhhhccc-Cccccccc--cccCCCCCcccccCCCeEEEEEEe
Confidence 45667889999999999999998899999999863 556788875 58899998 5666665211 145688877
Q ss_pred ec
Q 047987 135 GT 136 (153)
Q Consensus 135 Gt 136 (153)
|-
T Consensus 79 g~ 80 (192)
T PHA02448 79 GV 80 (192)
T ss_pred cc
Confidence 64
No 44
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.67 E-value=21 Score=32.46 Aligned_cols=18 Identities=33% Similarity=0.737 Sum_probs=15.9
Q ss_pred ceeeeeeeEEEeeCCcEE
Q 047987 108 EWSGEVRNITYSVDGKTV 125 (153)
Q Consensus 108 gW~gEVR~i~ys~dGksV 125 (153)
.|+|||-+|+|.|=.+++
T Consensus 103 ~WaGEVSdIlYdP~~D~L 120 (339)
T PF09910_consen 103 KWAGEVSDILYDPYEDRL 120 (339)
T ss_pred ccccchhheeeCCCcCEE
Confidence 499999999999988766
No 45
>PF05870 PA_decarbox: Phenolic acid decarboxylase (PAD); InterPro: IPR008729 This family consists of several bacterial phenolic acid decarboxylase proteins. Phenolic acids, also called substituted cinnamic acids, are important lignin-related aromatic acids and natural constituents of plant cell walls. These acids (particularly ferulic, p-coumaric, and caffeic acids) bind the complex lignin polymer to the hemicellulose and cellulose in plants. The phenolic acid decarboxylase (PAD) gene (pad) is transcriptionally regulated by p-coumaric, ferulic, or caffeic acid; these three acids are the three substrates of PAD [].; GO: 0016831 carboxy-lyase activity; PDB: 3NAD_B 2P8G_A 3NX2_A 3NX1_A 2W2B_A 2GC9_B 2W2F_A 2WSJ_B 2W2A_B.
Probab=39.44 E-value=29 Score=28.61 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=13.8
Q ss_pred hccCceeeeeeeEEEeeCCcEEEEEEEE
Q 047987 104 LHAPEWSGEVRNITYSVDGKTVSVVYRV 131 (153)
Q Consensus 104 fyAPgW~gEVR~i~ys~dGksVsVvyRV 131 (153)
=|+.||.+|+ -.++ .+ +|+|||
T Consensus 12 tYdnGW~YE~--y~kN--~~--~idYrI 33 (159)
T PF05870_consen 12 TYDNGWRYEM--YFKN--ED--TIDYRI 33 (159)
T ss_dssp EETTS-EEEE--EEEE--TT--EEEEEE
T ss_pred EcCCCcEEEE--EEec--CC--EEEEEE
Confidence 3789999998 3333 33 367775
No 46
>PHA02947 S-S bond formation pathway protein; Provisional
Probab=39.18 E-value=23 Score=30.26 Aligned_cols=33 Identities=42% Similarity=0.740 Sum_probs=25.8
Q ss_pred hHHHHHHHhccc-CCcccccccccCCccccccchhhhh
Q 047987 63 PLSEILKELNKN-VPNSLIKIRVEDGFSMKYIPWHIVN 99 (153)
Q Consensus 63 PLaEILrdLnKr-VPD~lvktr~~~g~s~~yIPWy~an 99 (153)
-+..|++-|+|| ||+.+|..|. + +..-||+.+-
T Consensus 151 gl~~I~~aL~kr~v~~~~i~nr~--~--~~~~~W~i~~ 184 (215)
T PHA02947 151 GLNTIVKSLNKRYVPDPIIENRL--P--YSNKPWFIVG 184 (215)
T ss_pred hHHHHHHHHhcccCCchhhhccC--C--cCCCchHHHH
Confidence 688999999999 9998887665 2 3455999763
No 47
>PF11259 DUF3060: Protein of unknown function (DUF3060); InterPro: IPR021417 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed.
Probab=38.97 E-value=1.1e+02 Score=20.83 Aligned_cols=35 Identities=34% Similarity=0.500 Sum_probs=26.1
Q ss_pred eeeeeeEEEeeCCcEEEE--EEEEEEEecccceeeec
Q 047987 110 SGEVRNITYSVDGKTVSV--VYRVTIYGTDAEVTSNS 144 (153)
Q Consensus 110 ~gEVR~i~ys~dGksVsV--vyRVTi~GtDge~~REA 144 (153)
.|.|..+..++.+.+|++ +=+|+++|.|-.++-..
T Consensus 12 ~G~c~~vtV~G~~n~V~~~~v~~i~v~G~~N~V~~~~ 48 (61)
T PF11259_consen 12 TGDCGSVTVSGSDNTVTVDSVDNISVSGSDNTVTYKS 48 (61)
T ss_pred EeEEeEEEEEcccCEEEEeeeeEEEEEecCCEEEecC
Confidence 367777788888877765 35689999998876554
No 48
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=37.90 E-value=3.3 Score=26.85 Aligned_cols=16 Identities=19% Similarity=0.557 Sum_probs=11.6
Q ss_pred hhhhhccCceeeeeeeE
Q 047987 100 RIMNLHAPEWSGEVRNI 116 (153)
Q Consensus 100 RiL~fyAPgW~gEVR~i 116 (153)
-++.||+| ||+.|+.+
T Consensus 20 vvv~f~~~-~C~~C~~~ 35 (103)
T PF00085_consen 20 VVVYFYAP-WCPPCKAF 35 (103)
T ss_dssp EEEEEEST-TSHHHHHH
T ss_pred EEEEEeCC-CCCccccc
Confidence 36778886 88887654
No 49
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=37.18 E-value=7.5 Score=27.55 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=26.4
Q ss_pred cccCCcccccccccCCccccccchhhhhhhhhhccCceeeeeee
Q 047987 72 NKNVPNSLIKIRVEDGFSMKYIPWHIVNRIMNLHAPEWSGEVRN 115 (153)
Q Consensus 72 nKrVPD~lvktr~~~g~s~~yIPWy~anRiL~fyAPgW~gEVR~ 115 (153)
.+++|+--++....+|-++..==.---.-+++|++..||+-|+.
T Consensus 3 G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~ 46 (146)
T PF08534_consen 3 GDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRK 46 (146)
T ss_dssp TSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHH
T ss_pred CCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchh
Confidence 35677766655445665444433223445899999999998764
No 50
>PF04359 DUF493: Protein of unknown function (DUF493); InterPro: IPR007454 This family includes several proteins of uncharacterised function.; PDB: 1RWU_A 2JOQ_A 2H9Z_A.
Probab=36.53 E-value=21 Score=24.67 Aligned_cols=40 Identities=38% Similarity=0.468 Sum_probs=28.5
Q ss_pred hhhhhhhccCceeeeeeeEEEeeCCcEEEEEEEEEEEecc
Q 047987 98 VNRIMNLHAPEWSGEVRNITYSVDGKTVSVVYRVTIYGTD 137 (153)
Q Consensus 98 anRiL~fyAPgW~gEVR~i~ys~dGksVsVvyRVTi~GtD 137 (153)
+..++.-|+|+-.-+..+.--|.+||-+||+..++++-.|
T Consensus 27 v~~iv~~~~~~~~~~~~~~k~S~~GkY~Svtv~v~v~s~e 66 (85)
T PF04359_consen 27 VKEIVEKHAPEFDDEKVSSKPSSKGKYVSVTVSVTVESAE 66 (85)
T ss_dssp HCCCCCCHSS--SSEEEEECCSTTSSEEEEEEEEEESSHH
T ss_pred HHHHHHHhCCcCccCceEEecCCCCeEEEEEEEEEECCHH
Confidence 5567788888776666666689999999888877765544
No 51
>PRK06518 hypothetical protein; Provisional
Probab=36.49 E-value=63 Score=26.06 Aligned_cols=32 Identities=22% Similarity=0.467 Sum_probs=23.2
Q ss_pred hccCceeeeeeeEEEeeCCcEEEEE---------EEEEEEecccc
Q 047987 104 LHAPEWSGEVRNITYSVDGKTVSVV---------YRVTIYGTDAE 139 (153)
Q Consensus 104 fyAPgW~gEVR~i~ys~dGksVsVv---------yRVTi~GtDge 139 (153)
+.+.-..|.|+ |+ ||+|+.|. .+|.|.|.|+=
T Consensus 19 ~~~~~~~G~v~-V~---DGDTl~l~~~~~~~~~~~~VRL~GIDAP 59 (177)
T PRK06518 19 NNVVIFHGRAQ-VT---SGVTFKLIADGWRKEITRDIRLYGVDTC 59 (177)
T ss_pred cccccccceEE-EE---cCCEEEEeeccccCCCCeEEEEEEEcCC
Confidence 34445778773 33 89999886 48999999964
No 52
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=36.34 E-value=7.8 Score=30.23 Aligned_cols=15 Identities=7% Similarity=0.175 Sum_probs=11.4
Q ss_pred hhhhccCceeeeeeeE
Q 047987 101 IMNLHAPEWSGEVRNI 116 (153)
Q Consensus 101 iL~fyAPgW~gEVR~i 116 (153)
+++|||| ||+.|+-+
T Consensus 87 VV~Fya~-wc~~Ck~m 101 (175)
T cd02987 87 VVHIYEP-GIPGCAAL 101 (175)
T ss_pred EEEEECC-CCchHHHH
Confidence 6788888 88887643
No 53
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=36.12 E-value=6.2 Score=27.70 Aligned_cols=15 Identities=13% Similarity=0.470 Sum_probs=9.1
Q ss_pred hhhhccCceeeeeeeE
Q 047987 101 IMNLHAPEWSGEVRNI 116 (153)
Q Consensus 101 iL~fyAPgW~gEVR~i 116 (153)
++.|||| ||+-|+.+
T Consensus 28 lV~F~a~-wC~~C~~~ 42 (111)
T cd02963 28 LIKITSD-WCFSCIHI 42 (111)
T ss_pred EEEEECC-ccHhHHHh
Confidence 4567765 67766543
No 54
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=35.88 E-value=6.3 Score=32.54 Aligned_cols=15 Identities=27% Similarity=0.950 Sum_probs=12.6
Q ss_pred hhhhccCceeeeeeeE
Q 047987 101 IMNLHAPEWSGEVRNI 116 (153)
Q Consensus 101 iL~fyAPgW~gEVR~i 116 (153)
++.|||| ||+.|+.+
T Consensus 22 ~v~f~a~-wC~~c~~~ 36 (462)
T TIGR01130 22 LVEFYAP-WCGHCKSL 36 (462)
T ss_pred EEEEECC-CCHHHHhh
Confidence 5889998 99998865
No 55
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=35.79 E-value=5.5 Score=26.02 Aligned_cols=15 Identities=27% Similarity=0.924 Sum_probs=10.1
Q ss_pred hhhhccCceeeeeeeE
Q 047987 101 IMNLHAPEWSGEVRNI 116 (153)
Q Consensus 101 iL~fyAPgW~gEVR~i 116 (153)
++.|||| ||+.++.+
T Consensus 22 ~v~f~~~-~C~~C~~~ 36 (104)
T cd02995 22 LVEFYAP-WCGHCKAL 36 (104)
T ss_pred EEEEECC-CCHHHHHH
Confidence 5777774 77777653
No 56
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=35.76 E-value=7.6 Score=29.97 Aligned_cols=14 Identities=0% Similarity=-0.118 Sum_probs=12.1
Q ss_pred hhhhccCceeeeeee
Q 047987 101 IMNLHAPEWSGEVRN 115 (153)
Q Consensus 101 iL~fyAPgW~gEVR~ 115 (153)
+++|||+ ||+-||.
T Consensus 54 lvnFWAs-WCppCr~ 67 (153)
T TIGR02738 54 LVFFYQS-TCPYCHQ 67 (153)
T ss_pred EEEEECC-CChhHHH
Confidence 9999997 9998763
No 57
>PF14356 DUF4403: Domain of unknown function (DUF4403)
Probab=35.51 E-value=1.4e+02 Score=26.42 Aligned_cols=59 Identities=19% Similarity=0.280 Sum_probs=37.4
Q ss_pred cchhHHHHHHHhcccCCcccccccccCCccccccchhhhhhhhhhccCceeeeeee---EEEeeCCcEEEEEEEEEE
Q 047987 60 ISRPLSEILKELNKNVPNSLIKIRVEDGFSMKYIPWHIVNRIMNLHAPEWSGEVRN---ITYSVDGKTVSVVYRVTI 133 (153)
Q Consensus 60 itRPLaEILrdLnKrVPD~lvktr~~~g~s~~yIPWy~anRiL~fyAPgW~gEVR~---i~ys~dGksVsVvyRVTi 133 (153)
|.=||++|-+-+|+.+|..+.+....... ...=...+.|.. |..+.+|+.+.+..-+++
T Consensus 11 v~i~l~~l~~~~n~~lp~~~~~~~~~~~~---------------~~~~~i~~~v~R~g~i~i~~~~~~l~~~~Pl~~ 72 (427)
T PF14356_consen 11 VEIPLADLEDALNRKLPGEFYGDDDFPDD---------------LNNDDIRYKVWRTGPITITGNGNKLTLTVPLKI 72 (427)
T ss_pred EEEEHHHHHHHHhhhCchhhcCCCCCCCc---------------cccceEEEEEEecCceEEEecCCEEEEEEEEEE
Confidence 56689999999999999999987543221 000113333332 566667777766664443
No 58
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=35.50 E-value=82 Score=21.96 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=32.6
Q ss_pred hhhccCceeee-e--eeEEEeeCCcEEEEEEEEEEEecccceeeecccee
Q 047987 102 MNLHAPEWSGE-V--RNITYSVDGKTVSVVYRVTIYGTDAEVTSNSVNIL 148 (153)
Q Consensus 102 L~fyAPgW~gE-V--R~i~ys~dGksVsVvyRVTi~GtDge~~REATGT~ 148 (153)
++|..|.-.|+ | +..... -|+++ .+++++|+-.||++.=.++||-
T Consensus 64 i~f~rp~~~G~~l~~~a~v~~-~g~~~-~~~~~~i~~~~~~~va~~~~t~ 111 (114)
T TIGR02286 64 IDFLRPGRAGERLEAEAVEVS-RGGRT-GTYDVEVVNQEGELVALFRGTS 111 (114)
T ss_pred EEEecCCCCCCEEEEEEEEEE-eCCcE-EEEEEEEEcCCCCEEEEEEEEE
Confidence 68999999995 3 333343 35556 6889999988898877777764
No 59
>PRK10477 outer membrane lipoprotein Blc; Provisional
Probab=35.32 E-value=1.1e+02 Score=23.59 Aligned_cols=52 Identities=19% Similarity=0.200 Sum_probs=31.1
Q ss_pred chhhhhhhhhhccCceeeeeeeEEEe--eCCcEEEEEEEEEEEecccceeeeccceecc
Q 047987 94 PWHIVNRIMNLHAPEWSGEVRNITYS--VDGKTVSVVYRVTIYGTDAEVTSNSVNILLL 150 (153)
Q Consensus 94 PWy~anRiL~fyAPgW~gEVR~i~ys--~dGksVsVvyRVTi~GtDge~~REATGT~~l 150 (153)
-||.+-|+-+++-.+-.. + -.+|+ +|| ++.|+++-. .+.+|+ .....|++.+
T Consensus 42 ~WYeIar~~~~fe~~~~~-~-~a~Y~~~~~g-~i~V~n~~~-~~~~g~-~~~~~g~a~~ 95 (177)
T PRK10477 42 TWYEIARFDHRFERGLEK-V-TATYSLRDDG-GLNVINKGY-NPDRGM-WQESEGKAYF 95 (177)
T ss_pred HHHHhhcCCchhhcCcee-E-EEEEEECCCC-cEEEEEeeE-cCCCCC-EEEEEEEEEe
Confidence 599999998887666332 2 33444 456 588877642 222244 3467777643
No 60
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=35.21 E-value=9.8 Score=25.63 Aligned_cols=15 Identities=7% Similarity=0.240 Sum_probs=12.0
Q ss_pred hhhhccCceeeeeeeE
Q 047987 101 IMNLHAPEWSGEVRNI 116 (153)
Q Consensus 101 iL~fyAPgW~gEVR~i 116 (153)
+|.||++ ||+-|+..
T Consensus 25 vl~F~~~-wC~~C~~~ 39 (114)
T cd02967 25 LLFFLSP-TCPVCKKL 39 (114)
T ss_pred EEEEECC-CCcchHhH
Confidence 7889976 99998754
No 61
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=33.59 E-value=66 Score=22.82 Aligned_cols=22 Identities=18% Similarity=0.484 Sum_probs=18.9
Q ss_pred eeeeeeeEEEeeCCcEEEEEEE
Q 047987 109 WSGEVRNITYSVDGKTVSVVYR 130 (153)
Q Consensus 109 W~gEVR~i~ys~dGksVsVvyR 130 (153)
..=++.+++|.-||+.+++-|.
T Consensus 40 L~m~lvd~e~~~D~~k~~fyy~ 61 (88)
T PF04468_consen 40 LPMKLVDVEYQFDGSKLTFYYT 61 (88)
T ss_pred CCeEEEEEEEEcCCCEEEEEEE
Confidence 3558899999999999988887
No 62
>PF02470 MCE: mce related protein; InterPro: IPR003399 This domain is found in all 24 mce genes associated with the four mammalian cell entry (mce) operons of Mycobacterium tuberculosis and their homologs in other Actinomycetales [, ]. The archetype (mce1A, Rv0169), was isolated as being necessary for colonisation of, and survival within, the macrophage []. The domain is also found in: Chloroplast Ycf22 and related cyanobacterial homologs, the majority of which have an N-terminal transmembrane domain and are putative ABC transporters. Proteobacterial homologs, which include YrbD, YebT, VpsC and Ttg2C, the latter being annotated as a toluene tolerance proteins, belong to the periplasmic substrate-binding ABC transporter superfamily.
Probab=33.43 E-value=80 Score=20.98 Aligned_cols=21 Identities=38% Similarity=0.583 Sum_probs=15.2
Q ss_pred eeeeeeEEEeeCCcEEEEEEE
Q 047987 110 SGEVRNITYSVDGKTVSVVYR 130 (153)
Q Consensus 110 ~gEVR~i~ys~dGksVsVvyR 130 (153)
=|.|.+|.+.++++.|.|..+
T Consensus 28 VG~V~~i~l~~~~~~v~v~~~ 48 (81)
T PF02470_consen 28 VGKVTSIELDPDGNRVRVTLR 48 (81)
T ss_pred EEEEEEEEEcCCCCEEEEEEE
Confidence 389999999888876544433
No 63
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=32.65 E-value=1.2e+02 Score=18.71 Aligned_cols=33 Identities=27% Similarity=0.299 Sum_probs=19.4
Q ss_pred cCceeeeeeeEEEeeCCcEEEEEEEEEE-Eecccce
Q 047987 106 APEWSGEVRNITYSVDGKTVSVVYRVTI-YGTDAEV 140 (153)
Q Consensus 106 APgW~gEVR~i~ys~dGksVsVvyRVTi-~GtDge~ 140 (153)
.|.+..++.++ ..+|+.|.+.++.+. ...+|+.
T Consensus 50 ~~~~~~~~~~~--~~~gd~v~~~~~~~~~~~~~g~~ 83 (102)
T PF12680_consen 50 FPDIRFEIHDI--FADGDRVVVEWTVTGTTPPTGQP 83 (102)
T ss_dssp EEEEEEEEEEE--EEETTEEEEEEEEEEEETTTSCE
T ss_pred CCceEEEEEEE--EEcCCEEEEEEEEEEEEcCCCCE
Confidence 46677777666 334566777666665 3344443
No 64
>PRK04998 hypothetical protein; Provisional
Probab=32.08 E-value=51 Score=23.37 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=24.3
Q ss_pred hhhhhhccCceeeeeeeEEEeeCCcEEEEEEEEEEEecc
Q 047987 99 NRIMNLHAPEWSGEVRNITYSVDGKTVSVVYRVTIYGTD 137 (153)
Q Consensus 99 nRiL~fyAPgW~gEVR~i~ys~dGksVsVvyRVTi~GtD 137 (153)
-.++.-|+|+-. ...+--|..||-+||+.+|+++..|
T Consensus 33 ~~v~~~~~~~~~--~~~~r~S~~GkY~Svtv~v~v~s~e 69 (88)
T PRK04998 33 VEVVQRHAPGDY--TPTVKPSSKGNYHSVSITITATSIE 69 (88)
T ss_pred HHHHHHhCCCCC--CceEccCCCCEEEEEEEEEEECCHH
Confidence 355566777632 2234568899988888887776654
No 65
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=31.98 E-value=61 Score=27.26 Aligned_cols=29 Identities=21% Similarity=0.444 Sum_probs=20.0
Q ss_pred ceeeeeeeEEEeeCCcEEEEEEEEEEEecccceee
Q 047987 108 EWSGEVRNITYSVDGKTVSVVYRVTIYGTDAEVTS 142 (153)
Q Consensus 108 gW~gEVR~i~ys~dGksVsVvyRVTi~GtDge~~R 142 (153)
++.+.+++|.+.+||. + |=.|. .+|++||
T Consensus 303 ~~~~r~~~v~~~pDG~-L---yv~~d--~~G~iyR 331 (331)
T PF07995_consen 303 GFGGRPRDVAQGPDGA-L---YVSDD--SDGKIYR 331 (331)
T ss_dssp TSSS-EEEEEEETTSE-E---EEEE---TTTTEEE
T ss_pred cCCCCceEEEEcCCCe-E---EEEEC--CCCeEeC
Confidence 4566788999999983 4 44555 7888887
No 66
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=31.65 E-value=1.5e+02 Score=20.73 Aligned_cols=40 Identities=25% Similarity=0.379 Sum_probs=26.1
Q ss_pred hhhccCceeee-------eeeEEEee-CCcEEEEEEEEEEEeccccee
Q 047987 102 MNLHAPEWSGE-------VRNITYSV-DGKTVSVVYRVTIYGTDAEVT 141 (153)
Q Consensus 102 L~fyAPgW~gE-------VR~i~ys~-dGksVsVvyRVTi~GtDge~~ 141 (153)
+.||.|-.-|+ |.++.--. .|+.+.|+.+.+++..|||..
T Consensus 82 ~~~h~Pl~~Gd~l~~~~~v~~v~~k~g~G~~~~v~~~~~~~~~~Ge~v 129 (132)
T PF13452_consen 82 IEFHRPLRPGDTLTATSRVTDVYDKRGAGKGVFVTVETEYTDQDGELV 129 (132)
T ss_dssp EEESS--BSSEEEEEEEEEEEEEEES-TTSEEEEEEEEEEE-CTTEEE
T ss_pred EEEeCCCCCCCEEEEEEEEEEEEEecCCCCEEEEEEEEEEECCCCCEE
Confidence 35777776554 44444432 378899999999999999974
No 67
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=31.51 E-value=7.7 Score=25.26 Aligned_cols=15 Identities=33% Similarity=1.015 Sum_probs=11.0
Q ss_pred hhhhccCceeeeeeeE
Q 047987 101 IMNLHAPEWSGEVRNI 116 (153)
Q Consensus 101 iL~fyAPgW~gEVR~i 116 (153)
++.||+| ||+.++.+
T Consensus 22 ~v~f~a~-~C~~C~~~ 36 (105)
T cd02998 22 LVEFYAP-WCGHCKNL 36 (105)
T ss_pred EEEEECC-CCHHHHhh
Confidence 6788876 88887643
No 68
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=30.76 E-value=7.4 Score=27.72 Aligned_cols=15 Identities=27% Similarity=0.769 Sum_probs=10.3
Q ss_pred hhhhccCceeeeeeeE
Q 047987 101 IMNLHAPEWSGEVRNI 116 (153)
Q Consensus 101 iL~fyAPgW~gEVR~i 116 (153)
++.|||| ||+-|+.+
T Consensus 23 vV~f~a~-wC~~C~~~ 37 (114)
T cd02992 23 LVEFYAS-WCGHCRAF 37 (114)
T ss_pred EEEEECC-CCHHHHHH
Confidence 5677776 88777654
No 69
>PF15532 Toxin_53: Putative toxin 53
Probab=30.38 E-value=65 Score=24.90 Aligned_cols=26 Identities=19% Similarity=0.109 Sum_probs=17.9
Q ss_pred EEEEEEEEeccc-----------ceeeec--cceecccc
Q 047987 127 VVYRVTIYGTDA-----------EVTSNS--VNILLLIE 152 (153)
Q Consensus 127 VvyRVTi~GtDg-----------e~~REA--TGT~~l~~ 152 (153)
++|||-+++.|. -+||=. -|...+++
T Consensus 34 ~tyrvRvH~~Dp~ap~Gsnaa~G~IyRI~qg~G~~y~d~ 72 (102)
T PF15532_consen 34 KTYRVRVHPADPTAPAGSNAANGWIYRISQGSGWEYMDP 72 (102)
T ss_pred ceEEEEecCCCCCCCCCCcccCCCEEEEEeccCceEecC
Confidence 577888887775 567766 66666654
No 70
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=30.26 E-value=75 Score=24.12 Aligned_cols=41 Identities=27% Similarity=0.223 Sum_probs=30.2
Q ss_pred hhhhhhhhccCceeeeeeeEEEeeCCcEEEEEEEEEEEecccc
Q 047987 97 IVNRIMNLHAPEWSGEVRNITYSVDGKTVSVVYRVTIYGTDAE 139 (153)
Q Consensus 97 ~anRiL~fyAPgW~gEVR~i~ys~dGksVsVvyRVTi~GtDge 139 (153)
.+.+++.-||||-.-+=...--|+-|+-++ .+|+|+.+|=|
T Consensus 31 ~vv~vvqr~ap~~~~~~~~~k~SSkGnY~s--vsI~i~A~~~E 71 (90)
T COG2921 31 QVVEVVQRHAPGDYTPRVSWKPSSKGNYLS--VSITIRATNIE 71 (90)
T ss_pred HHHHHHHHHCCcccCceeeeccCCCCceEE--EEEEEEECCHH
Confidence 356788889999666655567788887555 47888888865
No 71
>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis. This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.
Probab=29.55 E-value=99 Score=21.32 Aligned_cols=24 Identities=17% Similarity=0.099 Sum_probs=13.1
Q ss_pred eCCcEEEEEEEEEEEecccceeee
Q 047987 120 VDGKTVSVVYRVTIYGTDAEVTSN 143 (153)
Q Consensus 120 ~dGksVsVvyRVTi~GtDge~~RE 143 (153)
+.||++.+..-...+-.||.+.++
T Consensus 90 ptgk~v~~~~~~~~~~~~gkI~e~ 113 (126)
T PF07366_consen 90 PTGKPVEFRGMSIFRFEDGKIVEE 113 (126)
T ss_dssp -TTEEEEEEEEEEEEEETTEEEEE
T ss_pred CCCCEEEEEEEEEEEEECCEEEEE
Confidence 445666655555555556665543
No 72
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=29.55 E-value=41 Score=26.78 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=23.1
Q ss_pred hhhhhhhhhccCc-eeeeeeeEEEeeCCcEEEEEEE
Q 047987 96 HIVNRIMNLHAPE-WSGEVRNITYSVDGKTVSVVYR 130 (153)
Q Consensus 96 y~anRiL~fyAPg-W~gEVR~i~ys~dGksVsVvyR 130 (153)
.+|.=|.-=|+|| --|----=.||+||+.|+.+|-
T Consensus 52 lDA~dit~Pyt~GALRGGtHvHvfSpDG~~lSFTYN 87 (122)
T PF12566_consen 52 LDAMDITPPYTPGALRGGTHVHVFSPDGSWLSFTYN 87 (122)
T ss_pred cchhcccCCCCCccccCCccceEECCCCCEEEEEec
Confidence 3444455556665 4443334679999999999995
No 73
>PF06420 Mgm101p: Mitochondrial genome maintenance MGM101; InterPro: IPR009446 The mgm101 gene was identified as essential for maintenance of the mitochondrial genome in Saccharomyces cerevisiae []. Based on its DNA-binding activity, and experimental work with a temperature-sensitive mgm101 mutant, it has been proposed that the mgm101 gene product performs an essential function in the repair of oxidatively damaged mitochondrial DNA [].; GO: 0000002 mitochondrial genome maintenance, 0000262 mitochondrial chromosome
Probab=29.43 E-value=1.6e+02 Score=24.65 Aligned_cols=75 Identities=28% Similarity=0.360 Sum_probs=52.6
Q ss_pred HHHHHhcccCCcccccccccCCccccccchhhhhhhhhhcc-Cc-eeeeeeeEEEeeCCcEEEEEEEEEEEecccceeee
Q 047987 66 EILKELNKNVPNSLIKIRVEDGFSMKYIPWHIVNRIMNLHA-PE-WSGEVRNITYSVDGKTVSVVYRVTIYGTDAEVTSN 143 (153)
Q Consensus 66 EILrdLnKrVPD~lvktr~~~g~s~~yIPWy~anRiL~fyA-Pg-W~gEVR~i~ys~dGksVsVvyRVTi~GtDge~~RE 143 (153)
|+-+-|..+|...=|..+. || +-|+|+-.-.||||--- || |.=-=|+.+.-. +|.|+=.|-+..+| .+.-.
T Consensus 18 e~~~~L~~pl~~~DiEIKP-DG--liYLPEikYRRiLN~AFGpGgWgL~Prg~~~v~-~k~v~ReyaLic~G---r~Vs~ 90 (171)
T PF06420_consen 18 EVADILLAPLDPEDIEIKP-DG--LIYLPEIKYRRILNKAFGPGGWGLVPRGETIVT-GKIVTREYALICHG---RLVSQ 90 (171)
T ss_pred HHHHHHhCCCChhceeECC-Cc--eEEchHHHHHHHHHHhcCCCceeeeecCCceec-CceEEEEEEEEEcC---EEEEE
Confidence 5566678899888888854 66 57999999999999654 85 986555544442 66787777777654 55555
Q ss_pred ccce
Q 047987 144 SVNI 147 (153)
Q Consensus 144 ATGT 147 (153)
|.|.
T Consensus 91 a~GE 94 (171)
T PF06420_consen 91 ARGE 94 (171)
T ss_pred eecc
Confidence 5553
No 74
>PF03147 FDX-ACB: Ferredoxin-fold anticodon binding domain; InterPro: IPR005121 Aminoacyl-tRNA synthetases (aaRSs) play a crucial role in the translation of the genetic code by means of covalent attachment of amino acids to their cognate tRNAs. Phenylalanine-tRNA synthetase (PheRS) is known to be among the most complex enzymes of the aaRS family. Bacterial and mitochondrial PheRSs share a ferredoxin-fold anticodon binding (FDX-ACB) domain, which represents a canonical double split alpha+beta motif having no insertions. The FDX-ACB domain displays a typical RNA recognition fold (RRM) (see PDOC00030 from PROSITEDOC) formed by the four-stranded antiparallel beta sheet, with two helices packed against it [, , , , ].; GO: 0000049 tRNA binding, 0000287 magnesium ion binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation, 0008033 tRNA processing; PDB: 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 3PCO_D 2RHS_D 2RHQ_B 2AKW_B 1B70_B ....
Probab=29.39 E-value=69 Score=22.33 Aligned_cols=50 Identities=20% Similarity=0.355 Sum_probs=24.1
Q ss_pred cchhhhhhhhhhccCce--eeeeeeEEEeeCC---cEEEEEEEEEEEecccceeee
Q 047987 93 IPWHIVNRIMNLHAPEW--SGEVRNITYSVDG---KTVSVVYRVTIYGTDAEVTSN 143 (153)
Q Consensus 93 IPWy~anRiL~fyAPgW--~gEVR~i~ys~dG---ksVsVvyRVTi~GtDge~~RE 143 (153)
+||-.+-..+.-.+.+. +-++.|+ |.+++ ...++.||+|++-.|.-+..+
T Consensus 18 ~~~~~i~~~i~~~~~~~l~~v~l~D~-y~~~~l~~g~kS~~~rl~~~~~~~TLt~~ 72 (94)
T PF03147_consen 18 VPFADIEEVIRSAGGPLLESVELFDV-YRGEKLPEGKKSLTYRLTYQSPDRTLTDE 72 (94)
T ss_dssp S-HHHHHHHHHHHHTTTEEEEEEEEE-EESTTSGTTEEEEEEEEEE--SSS---HH
T ss_pred CCHHHHHHHHHHhCccceeEEEEEEE-EcCCCCCCCcEEEEEEEEEECCCCCCCHH
Confidence 34554444444444332 2223333 55432 358999999999888766543
No 75
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=29.07 E-value=60 Score=31.04 Aligned_cols=44 Identities=23% Similarity=0.198 Sum_probs=28.4
Q ss_pred ccchhhhhhhhhhccCceeeeeeeEEEeeCCcEEEEEEEEEEEeccccee
Q 047987 92 YIPWHIVNRIMNLHAPEWSGEVRNITYSVDGKTVSVVYRVTIYGTDAEVT 141 (153)
Q Consensus 92 yIPWy~anRiL~fyAPgW~gEVR~i~ys~dGksVsVvyRVTi~GtDge~~ 141 (153)
||=-.|+-=+.-.+.=-=.|-|+++.||.|||. |-+-|.|||+|
T Consensus 326 ~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~------l~~~~~~GeV~ 369 (514)
T KOG2055|consen 326 HIHLLHAKTKELITSFKIEGVVSDFTFSSDSKE------LLASGGTGEVY 369 (514)
T ss_pred eEEeehhhhhhhhheeeeccEEeeEEEecCCcE------EEEEcCCceEE
Confidence 343334443333333334689999999999974 45667888876
No 76
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=28.99 E-value=8.6 Score=26.16 Aligned_cols=14 Identities=29% Similarity=0.980 Sum_probs=8.3
Q ss_pred hhhhccCceeeeeee
Q 047987 101 IMNLHAPEWSGEVRN 115 (153)
Q Consensus 101 iL~fyAPgW~gEVR~ 115 (153)
++.|||| ||+-|+.
T Consensus 19 lv~f~a~-wC~~C~~ 32 (104)
T cd03000 19 LVDFYAP-WCGHCKK 32 (104)
T ss_pred EEEEECC-CCHHHHh
Confidence 4556665 6766653
No 77
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=28.80 E-value=7.8 Score=25.37 Aligned_cols=15 Identities=13% Similarity=0.669 Sum_probs=9.2
Q ss_pred hhhhccCceeeeeeeE
Q 047987 101 IMNLHAPEWSGEVRNI 116 (153)
Q Consensus 101 iL~fyAPgW~gEVR~i 116 (153)
++.||+ .||+.++.+
T Consensus 18 ~v~f~~-~~C~~C~~~ 32 (97)
T cd02984 18 VLHFWA-PWAEPCKQM 32 (97)
T ss_pred EEEEEC-CCCHHHHHH
Confidence 456665 477766644
No 78
>PRK11688 hypothetical protein; Provisional
Probab=28.28 E-value=1.3e+02 Score=22.53 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=28.9
Q ss_pred hhccCceeee-e--eeEEEeeCCcEEEEEEEEEEEecccceeeecccee
Q 047987 103 NLHAPEWSGE-V--RNITYSVDGKTVSVVYRVTIYGTDAEVTSNSVNIL 148 (153)
Q Consensus 103 ~fyAPgW~gE-V--R~i~ys~dGksVsVvyRVTi~GtDge~~REATGT~ 148 (153)
+|..|. .|+ | +--+. --|+++ .+++++|+..||++.=.++||-
T Consensus 106 ~fl~p~-~g~~l~a~a~v~-~~g~r~-~~~~~~i~~~~g~lvA~a~~t~ 151 (154)
T PRK11688 106 DYLRPG-RGERFTATSSVL-RAGNKV-AVARMELHNEQGVHIASGTATY 151 (154)
T ss_pred EeeccC-CCCeEEEEEEEE-EccCCE-EEEEEEEECCCCCEEEEEEEEE
Confidence 556676 344 2 22222 347777 5789999988999988888774
No 79
>PRK13836 conjugal transfer protein TrbF; Provisional
Probab=28.13 E-value=1.2e+02 Score=24.38 Aligned_cols=88 Identities=13% Similarity=0.133 Sum_probs=51.4
Q ss_pred hhHHHHHHHhcccCCcccccccc---------cCC-ccccccchhhhhhhhhhc-cCceeeeeeeEEEeeCCcEEEEEEE
Q 047987 62 RPLSEILKELNKNVPNSLIKIRV---------EDG-FSMKYIPWHIVNRIMNLH-APEWSGEVRNITYSVDGKTVSVVYR 130 (153)
Q Consensus 62 RPLaEILrdLnKrVPD~lvktr~---------~~g-~s~~yIPWy~anRiL~fy-APgW~gEVR~i~ys~dGksVsVvyR 130 (153)
-=|++-+++..---||.++..+- ..+ ..-.|-=||..|=-.... ...-.=+|++|...+++ +-.|-++
T Consensus 91 ~~la~fI~~~rs~~~d~~~q~~~~~~~~~~l~s~~~~~~~~~~~~~~~~p~~~~~~~~v~V~I~Si~~~s~~-t~qVr~~ 169 (220)
T PRK13836 91 ATLGSFVTNFRSVTPDAVVQKQYIDRTYALLRTSDPSTEKVNAWFRSNSPFEKAKNATVAIEVNNIVALSNQ-SYQIDWT 169 (220)
T ss_pred HHHHHHHHhheeeccCHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhccCchHHhcCcEEEEEEEEEEeCCCC-EEEEEEE
Confidence 34667777777777777743211 111 123455566553222221 12256678888887665 7899999
Q ss_pred EEEEeccccee--eeccceecc
Q 047987 131 VTIYGTDAEVT--SNSVNILLL 150 (153)
Q Consensus 131 VTi~GtDge~~--REATGT~~l 150 (153)
-|+++.+|... +.-.|++++
T Consensus 170 et~~~~~g~~~~~~~w~~i~ti 191 (220)
T PRK13836 170 EFERDRKGKETATRRFRGIATV 191 (220)
T ss_pred EEEEcCCCccccccEEEEEEEE
Confidence 99999888532 344444443
No 80
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=27.80 E-value=91 Score=24.68 Aligned_cols=30 Identities=33% Similarity=0.458 Sum_probs=25.0
Q ss_pred eeeeeeeEEEeeCCcEEEEEEEEEEEecccceeee
Q 047987 109 WSGEVRNITYSVDGKTVSVVYRVTIYGTDAEVTSN 143 (153)
Q Consensus 109 W~gEVR~i~ys~dGksVsVvyRVTi~GtDge~~RE 143 (153)
=.|.|.+|.-..+|. |.|||..+||+..-+
T Consensus 9 ~~G~I~~I~~~ekgg-----~~vtI~~~dG~~v~~ 38 (118)
T PF01333_consen 9 AAGTITKITRKEKGG-----YEVTIETSDGETVVE 38 (118)
T ss_dssp SSEEEEEEEEETTSE-----EEEEEETTTSEEEEE
T ss_pred CCeEEEEEEEcCCCC-----EEEEEECCCCCEEEE
Confidence 368999999988884 899999999986654
No 81
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=27.41 E-value=60 Score=23.68 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=20.1
Q ss_pred eeeeeeeEEEeeCCcEEEEEEEEEEEe
Q 047987 109 WSGEVRNITYSVDGKTVSVVYRVTIYG 135 (153)
Q Consensus 109 W~gEVR~i~ys~dGksVsVvyRVTi~G 135 (153)
=.|.|..|+..+..---.|+||+.+.|
T Consensus 53 k~GdVvkI~R~S~taG~~v~YR~Vv~~ 79 (79)
T PRK09570 53 KPGDVIKIVRKSPTAGEAVYYRLVVEG 79 (79)
T ss_pred CCCCEEEEEECCCCCCccEEEEEEeCC
Confidence 369999999885433357999999853
No 82
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=27.41 E-value=10 Score=29.59 Aligned_cols=15 Identities=7% Similarity=0.527 Sum_probs=12.1
Q ss_pred hhhhccCceeeeeeeE
Q 047987 101 IMNLHAPEWSGEVRNI 116 (153)
Q Consensus 101 iL~fyAPgW~gEVR~i 116 (153)
+++||| .|||.|+-+
T Consensus 27 VvdF~A-~WCgpCk~m 41 (142)
T PLN00410 27 VIRFGH-DWDETCMQM 41 (142)
T ss_pred EEEEEC-CCChhHHHH
Confidence 478998 799988765
No 83
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=26.92 E-value=15 Score=29.31 Aligned_cols=15 Identities=13% Similarity=0.022 Sum_probs=11.6
Q ss_pred hhhhccCceeeeeeeE
Q 047987 101 IMNLHAPEWSGEVRNI 116 (153)
Q Consensus 101 iL~fyAPgW~gEVR~i 116 (153)
+++||+| ||+.|+-+
T Consensus 106 VV~Fya~-wc~~C~~m 120 (192)
T cd02988 106 VVHLYKD-GIPLCRLL 120 (192)
T ss_pred EEEEECC-CCchHHHH
Confidence 6788887 88888644
No 84
>PF02296 Alpha_adaptin_C: Alpha adaptin AP2, C-terminal domain; InterPro: IPR003164 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. AP adaptor alpha-adaptin can be divided into a trunk domain and the C-terminal appendage domain (or ear domain), separated by a linker region. The C-terminal appendage domain regulates translocation of endocytic accessory proteins to the bud site []. This entry represents a subdomain of the appendage (ear) domain of alpha-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1KYF_A 1B9K_A 1QTS_A 1KYU_A 2VJ0_A 1KY6_A 1W80_A 3HS8_A 1KYD_A 1QTP_A ....
Probab=26.76 E-value=60 Score=24.20 Aligned_cols=29 Identities=28% Similarity=0.461 Sum_probs=20.6
Q ss_pred eeeeeeEEEeeCCcEEEEEEEEEEEecccceee
Q 047987 110 SGEVRNITYSVDGKTVSVVYRVTIYGTDAEVTS 142 (153)
Q Consensus 110 ~gEVR~i~ys~dGksVsVvyRVTi~GtDge~~R 142 (153)
.|=...++...|.+ .||||||.+|..+.+
T Consensus 80 ~gcLlRlE~n~~~~----~~RlTvRst~~~vs~ 108 (113)
T PF02296_consen 80 VGCLLRLEPNQDAK----MFRLTVRSTDPSVSK 108 (113)
T ss_dssp EEEEEEEEEETTTT----EEEEEEEESSHHHHH
T ss_pred EEEEEEEeECCcCC----eEEEEEEECChhHHH
Confidence 55556666665554 699999999987643
No 85
>PF14356 DUF4403: Domain of unknown function (DUF4403)
Probab=26.58 E-value=2e+02 Score=25.42 Aligned_cols=36 Identities=17% Similarity=0.356 Sum_probs=26.0
Q ss_pred ccCCcccccccccCCcccc---ccchhhhhhhhhhccCc
Q 047987 73 KNVPNSLIKIRVEDGFSMK---YIPWHIVNRIMNLHAPE 108 (153)
Q Consensus 73 KrVPD~lvktr~~~g~s~~---yIPWy~anRiL~fyAPg 108 (153)
.++|+-.......+++.+. .||+-.+||+|.-..=|
T Consensus 236 ~pLP~l~~~~~~~~~~~i~l~~~i~y~~i~~~l~~~l~g 274 (427)
T PF14356_consen 236 TPLPPLKSLPAIPGGFRINLPADIPYAEINKLLTKQLAG 274 (427)
T ss_pred CCCCCccccCCCCCcEEEEEEEEcCHHHHHHHHHHHHcC
Confidence 4677776666555676654 79999999999866533
No 86
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=26.13 E-value=10 Score=24.29 Aligned_cols=15 Identities=33% Similarity=0.948 Sum_probs=9.1
Q ss_pred hhhhccCceeeeeeeE
Q 047987 101 IMNLHAPEWSGEVRNI 116 (153)
Q Consensus 101 iL~fyAPgW~gEVR~i 116 (153)
++.||+| ||+.++.+
T Consensus 18 vi~f~~~-~C~~C~~~ 32 (101)
T TIGR01068 18 LVDFWAP-WCGPCKMI 32 (101)
T ss_pred EEEEECC-CCHHHHHh
Confidence 4566664 77766544
No 87
>PF12528 DUF3728: Prepilin peptidase dependent protein C (DUF3728); InterPro: IPR022204 This family of proteins is found in bacteria. Proteins in this family are typically between 106 and 121 amino acids in length. The family is found in association with PF07963 from PFAM. There are two completely conserved C residues that may be functionally important. This family is frequently annotated as prepilin peptidase dependent protein C however there is little accompanying literature to confirm this.
Probab=25.88 E-value=1.4e+02 Score=21.35 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=23.5
Q ss_pred ccCceeeeeeeEEEeeCCcEEEEEEEEEE-Eecccceee
Q 047987 105 HAPEWSGEVRNITYSVDGKTVSVVYRVTI-YGTDAEVTS 142 (153)
Q Consensus 105 yAPgW~gEVR~i~ys~dGksVsVvyRVTi-~GtDge~~R 142 (153)
-.|||..+. ...+.++.=+.++..||. .|--+++.|
T Consensus 42 ~~~gWq~~~--~~~~~~~~C~~itvtv~tP~~~~a~LsR 78 (84)
T PF12528_consen 42 PPPGWQYSR--QQTSIQGGCRSITVTVTTPQNQQAQLSR 78 (84)
T ss_pred CCCCceeee--eeeccCCCeEEEEEEEecCCCcccccee
Confidence 356798887 666655655666766666 555566555
No 88
>PTZ00102 disulphide isomerase; Provisional
Probab=25.57 E-value=13 Score=31.53 Aligned_cols=16 Identities=25% Similarity=0.889 Sum_probs=12.3
Q ss_pred hhhhccCceeeeeeeEE
Q 047987 101 IMNLHAPEWSGEVRNIT 117 (153)
Q Consensus 101 iL~fyAPgW~gEVR~i~ 117 (153)
++.|||| ||+.|+.+.
T Consensus 53 lv~f~a~-wC~~Ck~~~ 68 (477)
T PTZ00102 53 LVKFYAP-WCGHCKRLA 68 (477)
T ss_pred EEEEECC-CCHHHHHhh
Confidence 5678987 999987653
No 89
>PRK10694 acyl-CoA esterase; Provisional
Probab=25.49 E-value=1.9e+02 Score=21.79 Aligned_cols=44 Identities=14% Similarity=0.148 Sum_probs=27.4
Q ss_pred hhhccCceeeeee----eEEEeeCCcEEEEEEEEEEEe--cc--cceeeeccc
Q 047987 102 MNLHAPEWSGEVR----NITYSVDGKTVSVVYRVTIYG--TD--AEVTSNSVN 146 (153)
Q Consensus 102 L~fyAPgW~gEVR----~i~ys~dGksVsVvyRVTi~G--tD--ge~~REATG 146 (153)
++|.+|.--|++- .|.|.+ +.|+.|-.+|..+. +| |+-.+-+++
T Consensus 62 i~F~~Pv~~Gd~l~~~a~V~~~g-~sS~~v~v~v~~~~~~~~~~g~~~~~~~~ 113 (133)
T PRK10694 62 MTFLRPVAVGDVVCCYARCVKTG-TTSISINIEVWVKKVASEPIGQRYKATEA 113 (133)
T ss_pred eEECCCcccCcEEEEEEEEEEcc-CceEEEEEEEEEeecccCCCCcEEEEEEE
Confidence 5899999999887 466775 33666666655422 22 554444555
No 90
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=25.40 E-value=56 Score=26.51 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=33.1
Q ss_pred hhHHHHHHHhcccCCcccccccccCCccccccch-hhhhhhhhhccCceeeeeeeEEEeeCCc
Q 047987 62 RPLSEILKELNKNVPNSLIKIRVEDGFSMKYIPW-HIVNRIMNLHAPEWSGEVRNITYSVDGK 123 (153)
Q Consensus 62 RPLaEILrdLnKrVPD~lvktr~~~g~s~~yIPW-y~anRiL~fyAPgW~gEVR~i~ys~dGk 123 (153)
.++.+|++.|.+...... .+...|...-|+|= ..+.=|-.+..|.||+.+.-+-.++||+
T Consensus 200 ~~~~~i~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~g~i~~~~~~~fC~~c~r~r~t~dG~ 260 (302)
T TIGR02668 200 EDIDPIEEELEKMADRVR--TRRMHNRPKYFIPGGVEVEVVKPMDNPVFCAHCTRLRLTSDGK 260 (302)
T ss_pred ecHHHHHHHHHHhccccc--ccCCCCCcEEEeCCCeEEEEECccCCCCccccCCeEEEcCCCC
Confidence 467788888877643221 11112333333432 1111122233346999999999999996
No 91
>cd07279 PX_SNX20_21_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX20, SNX21, and similar proteins. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. It may function in the sorting and cycling of PSGL-1 into endosomes. SNX21, also cal
Probab=25.19 E-value=1.3e+02 Score=21.53 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=21.5
Q ss_pred eeeeEEEeeCCcEEEEEEEEEEEecc
Q 047987 112 EVRNITYSVDGKTVSVVYRVTIYGTD 137 (153)
Q Consensus 112 EVR~i~ys~dGksVsVvyRVTi~GtD 137 (153)
||.+.....+|++-.|+|.|++...+
T Consensus 4 ~i~~~~~~~~~~~~yv~Y~I~v~~~~ 29 (112)
T cd07279 4 EIVSARTVKEGEKKYVVYQLAVVQTG 29 (112)
T ss_pred EeccCeEEcCCCeeEEEEEEEEEECC
Confidence 77777777888888899999998764
No 92
>PRK00341 hypothetical protein; Provisional
Probab=25.03 E-value=76 Score=23.00 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=26.3
Q ss_pred hhhhhhhhccCceeeeeeeEEEeeCCcEEEEEEEEEEEecc
Q 047987 97 IVNRIMNLHAPEWSGEVRNITYSVDGKTVSVVYRVTIYGTD 137 (153)
Q Consensus 97 ~anRiL~fyAPgW~gEVR~i~ys~dGksVsVvyRVTi~GtD 137 (153)
.+-.|+.-|+ ....+-..+--|.+||-++|...|++.+.|
T Consensus 33 ~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~~s~~ 72 (91)
T PRK00341 33 LVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVATDED 72 (91)
T ss_pred HHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEECCHH
Confidence 3456666677 334444455678899988888777776654
No 93
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=24.89 E-value=17 Score=27.34 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=15.4
Q ss_pred hhhhhccCc-eeeeeeeEE
Q 047987 100 RIMNLHAPE-WSGEVRNIT 117 (153)
Q Consensus 100 RiL~fyAPg-W~gEVR~i~ 117 (153)
-++.|||+. ||++|+.+.
T Consensus 30 ~v~~f~~~~~~cp~c~~i~ 48 (111)
T cd02965 30 LVLLLAGDPVRFPEVLDVA 48 (111)
T ss_pred EEEEecCCcccCcchhhhH
Confidence 368899998 999999875
No 94
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=24.76 E-value=10 Score=27.48 Aligned_cols=15 Identities=20% Similarity=0.815 Sum_probs=11.2
Q ss_pred hhhhccCceeeeeeeE
Q 047987 101 IMNLHAPEWSGEVRNI 116 (153)
Q Consensus 101 iL~fyAPgW~gEVR~i 116 (153)
|++||| .||+-|+.+
T Consensus 23 lV~F~a-~WC~~C~~~ 37 (117)
T cd02959 23 MLLIHK-TWCGACKAL 37 (117)
T ss_pred EEEEeC-CcCHHHHHH
Confidence 678898 688877654
No 95
>PF06863 DUF1254: Protein of unknown function (DUF1254); InterPro: IPR010679 This entry represents an immunoglobulin-like beta-sandwich domain found in a group of hypothetical proteins of unknown function.; PDB: 3VB9_D 2P3Y_A 3U07_A.
Probab=24.70 E-value=62 Score=23.93 Aligned_cols=31 Identities=23% Similarity=0.407 Sum_probs=23.3
Q ss_pred hccCceeeeeeeEEEeeCCcEEEEEEEEEEEe
Q 047987 104 LHAPEWSGEVRNITYSVDGKTVSVVYRVTIYG 135 (153)
Q Consensus 104 fyAPgW~gEVR~i~ys~dGksVsVvyRVTi~G 135 (153)
+..|+|.|+. .+.+....+.+.+..|+-+.|
T Consensus 80 i~~p~~~g~~-~vvv~s~t~~~~~~~R~~~~~ 110 (128)
T PF06863_consen 80 IVGPGWDGED-YVVVRSPTDYVWLLGRTLVNG 110 (128)
T ss_dssp EEETTGGCTT-CEEEEESCSEEEEEEEEES-S
T ss_pred EECCCCcCcc-ceeeecCCCEEEEEEEeecCC
Confidence 4679999988 445555677899999998844
No 96
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX []. This entry represents the N-terminal, membrane-spanning, region of of HflK responsible for anchoring the protein in the bacterial membrane. It is often found in association with PF01145 from PFAM.
Probab=24.34 E-value=33 Score=22.36 Aligned_cols=14 Identities=21% Similarity=0.532 Sum_probs=12.0
Q ss_pred hHHHHHHHhcccCC
Q 047987 63 PLSEILKELNKNVP 76 (153)
Q Consensus 63 PLaEILrdLnKrVP 76 (153)
-|.||+|+|++++=
T Consensus 22 DLdel~r~l~~kl~ 35 (42)
T PF12221_consen 22 DLDELFRKLQDKLG 35 (42)
T ss_pred CHHHHHHHHHHHHh
Confidence 49999999999864
No 97
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=24.24 E-value=83 Score=20.38 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=23.7
Q ss_pred hhhhhhhhccCceeeeeeeEEEeeCCcEEEEEEE
Q 047987 97 IVNRIMNLHAPEWSGEVRNITYSVDGKTVSVVYR 130 (153)
Q Consensus 97 ~anRiL~fyAPgW~gEVR~i~ys~dGksVsVvyR 130 (153)
.++-+|.+++- +|||.++.+.++...+.|.|.
T Consensus 13 ~~~~vl~~F~~--fGeI~~~~~~~~~~~~~l~y~ 44 (53)
T PF14605_consen 13 LAEEVLEHFAS--FGEIVDIYVPESTNWMYLKYK 44 (53)
T ss_pred HHHHHHHHHHh--cCCEEEEEcCCCCcEEEEEEC
Confidence 44566666664 999999999877777777663
No 98
>COG4853 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.12 E-value=77 Score=28.07 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=32.7
Q ss_pred ccccccchhhhhhhhhhccCceeeeeeeEEEeeCCcEEEEEEEEEEEecccce
Q 047987 88 FSMKYIPWHIVNRIMNLHAPEWSGEVRNITYSVDGKTVSVVYRVTIYGTDAEV 140 (153)
Q Consensus 88 ~s~~yIPWy~anRiL~fyAPgW~gEVR~i~ys~dGksVsVvyRVTi~GtDge~ 140 (153)
+...|..=++-- =...+||-||=+| .| +||.+++.|-+++....+++
T Consensus 215 a~fGY~s~v~lt-s~qVlaPvW~itV---kh--e~k~ktnq~~~~~ta~~~ti 261 (264)
T COG4853 215 ARFGYYSVVNLT-SVQVLAPVWEITV---KH--EGKDKTNQYYVEATANNPTI 261 (264)
T ss_pred EeeeeEEEEecc-cceEeeeeEEEEE---EE--cccccceeEEEEEccCCCee
Confidence 334455555544 4578999999776 34 47778889998888776654
No 99
>PF09684 Tail_P2_I: Phage tail protein (Tail_P2_I); InterPro: IPR006521 These sequences represent a family of phage tail proteins from phage P2 protein and related temperates phage of Gram-negative bacteria.
Probab=23.92 E-value=31 Score=25.50 Aligned_cols=53 Identities=19% Similarity=0.372 Sum_probs=34.0
Q ss_pred CCcchhHHHHHHHhcccCCcccccccccCCccccccchhhhhhhhhhccCceee
Q 047987 58 SGISRPLSEILKELNKNVPNSLIKIRVEDGFSMKYIPWHIVNRIMNLHAPEWSG 111 (153)
Q Consensus 58 s~itRPLaEILrdLnKrVPD~lvktr~~~g~s~~yIPWy~anRiL~fyAPgW~g 111 (153)
+.+.|.|++++..+ ....+.+..-..-+.+.-.++||.-.-+=+..|.++|.-
T Consensus 6 t~le~al~~~~~~~-~~~~~~i~~~~~~~~~~~~~L~~LA~~~~v~~~~~~~~~ 58 (139)
T PF09684_consen 6 TPLERALAALLARL-QEDIDSIRTLWDPDTCPEALLPWLAWELGVDEWDPAWPE 58 (139)
T ss_pred cHHHHHHHHHHhHH-HhhhHHHHHhcCcccCCHHHHHHHHHHhCcCccCCCCCH
Confidence 66777777777766 333444444444456777788887777666777777764
No 100
>TIGR00638 Mop molybdenum-pterin binding domain. This model describes a multigene family of molybdenum-pterin binding proteins of about 70 amino acids in Clostridium pasteurianum, as a tandemly-repeated domain C-terminal to an unrelated domain in ModE, a molybdate transport gene repressor of E. coli, and in single or tandemly paired domains in several related proteins.
Probab=23.84 E-value=1.2e+02 Score=19.03 Aligned_cols=29 Identities=17% Similarity=0.138 Sum_probs=19.1
Q ss_pred CceeeeeeeEEEeeCCcEEEEEEEEEEEeccc-cee
Q 047987 107 PEWSGEVRNITYSVDGKTVSVVYRVTIYGTDA-EVT 141 (153)
Q Consensus 107 PgW~gEVR~i~ys~dGksVsVvyRVTi~GtDg-e~~ 141 (153)
+.|.|.|.+|.+. |. ..+|++.-.+| +++
T Consensus 7 N~l~g~I~~i~~~--g~----~~~v~l~~~~~~~l~ 36 (69)
T TIGR00638 7 NQLKGKVVAIEDG--DV----NAEVDLLLGGGTKLT 36 (69)
T ss_pred cEEEEEEEEEEEC--CC----eEEEEEEECCCCEEE
Confidence 4589999999876 42 24566665566 444
No 101
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=23.80 E-value=1e+02 Score=20.49 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=18.2
Q ss_pred CCcEEEEEEEEEEEecccceeeec
Q 047987 121 DGKTVSVVYRVTIYGTDAEVTSNS 144 (153)
Q Consensus 121 dGksVsVvyRVTi~GtDge~~REA 144 (153)
+|+.|++.|...+ .||+.+.++
T Consensus 7 ~gd~V~i~y~~~~--~~g~~~~~~ 28 (94)
T PF00254_consen 7 EGDTVTIHYTGRL--EDGKVFDSS 28 (94)
T ss_dssp TTSEEEEEEEEEE--TTSEEEEET
T ss_pred CCCEEEEEEEEEE--CCCcEEEEe
Confidence 5788989888887 389998887
No 102
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=23.13 E-value=19 Score=26.38 Aligned_cols=15 Identities=27% Similarity=0.800 Sum_probs=11.3
Q ss_pred hhhhccCceeeeeeeE
Q 047987 101 IMNLHAPEWSGEVRNI 116 (153)
Q Consensus 101 iL~fyAPgW~gEVR~i 116 (153)
+++|||+ |||-++-|
T Consensus 25 VvdF~a~-wCgPCk~i 39 (106)
T KOG0907|consen 25 VVDFYAT-WCGPCKAI 39 (106)
T ss_pred EEEEECC-CCcchhhh
Confidence 4677774 99998765
No 103
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=22.93 E-value=1.2e+02 Score=17.35 Aligned_cols=11 Identities=36% Similarity=0.579 Sum_probs=7.8
Q ss_pred eEEEeeCCcEE
Q 047987 115 NITYSVDGKTV 125 (153)
Q Consensus 115 ~i~ys~dGksV 125 (153)
.-.+|+|||.+
T Consensus 13 ~p~~SpDGk~i 23 (39)
T PF07676_consen 13 SPAWSPDGKYI 23 (39)
T ss_dssp EEEE-TTSSEE
T ss_pred CEEEecCCCEE
Confidence 46789999865
No 104
>PF08402 TOBE_2: TOBE domain; InterPro: IPR013611 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. Probably involved in the recognition of small ligands such as molybdenum (e.g. P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT). Found in ABC transporters immediately after the ATPase domain. A strong RPE motif is found at the presumed N terminus of the domain. ; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1Q12_A 1Q1B_C 2AWN_D 3RLF_B 3PUX_B 2R6G_B 3PUV_B 1Q1E_A 3PV0_B 2AWO_A ....
Probab=21.48 E-value=2e+02 Score=17.57 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=19.6
Q ss_pred ceeeeeeeEEEeeCCcEEEEEEEEEEEecccce
Q 047987 108 EWSGEVRNITYSVDGKTVSVVYRVTIYGTDAEV 140 (153)
Q Consensus 108 gW~gEVR~i~ys~dGksVsVvyRVTi~GtDge~ 140 (153)
...|.|.+++|. |. .++++++..||+.
T Consensus 17 ~~~g~V~~~~~~--G~----~~~~~v~~~~~~~ 43 (75)
T PF08402_consen 17 RLPGTVVSVEFL--GS----ETRYTVRLEGGEE 43 (75)
T ss_dssp EEEEEEEEEEEE--SS----EEEEEEEETTSSE
T ss_pred eEEEEEEEEEEC--CC----EEEEEEEECCCCE
Confidence 588999999999 53 2455666666655
No 105
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=21.44 E-value=2.7e+02 Score=19.37 Aligned_cols=61 Identities=28% Similarity=0.250 Sum_probs=36.2
Q ss_pred HHHhcc-cCCccccccccc---CCccccccchhhhhhhhhhccCc-eeeeeeeEEEeeCCcEEEEEEEEEE
Q 047987 68 LKELNK-NVPNSLIKIRVE---DGFSMKYIPWHIVNRIMNLHAPE-WSGEVRNITYSVDGKTVSVVYRVTI 133 (153)
Q Consensus 68 LrdLnK-rVPD~lvktr~~---~g~s~~yIPWy~anRiL~fyAPg-W~gEVR~i~ys~dGksVsVvyRVTi 133 (153)
-+.||+ +.|+-+=+.... =|. -.|..+..|+.+.=..| .-.| -++.|+++. ++++--+|+|
T Consensus 26 ~~kL~~i~~P~fl~~i~v~~~~lG~---~~P~i~~~~~~~~~~~g~~~~~-~dv~Y~G~~-~l~l~t~l~~ 91 (91)
T PF10296_consen 26 QKKLNKIKLPSFLDEISVTELDLGD---SPPIISNVRIPDLDPDGELWIE-FDVSYSGGF-SLTLETKLNI 91 (91)
T ss_pred HHHHccccCCCccCcEEEEEEECCC---CCCEEEeccccccCCCCCEEEE-EEEEEcCCe-EEEEEEEEEC
Confidence 344554 355554333332 264 45666777777766667 5555 589999766 5766666654
No 106
>PF10934 DUF2634: Protein of unknown function (DUF2634); InterPro: IPR020288 This entry is represented by the Bacteriophage EJ-1, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Bacteriophage EJ-1, Orf60 function has not been characterised. It has been shown to be simialr to XkdS (P54331 from SWISSPROT), which is encoded on a phage-like element (prophage) of PSBX found in Bacillus subtilis.
Probab=21.37 E-value=1.9e+02 Score=21.46 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=19.9
Q ss_pred eeeeeEEEeeCCcEEEEEEEEEEEecccce
Q 047987 111 GEVRNITYSVDGKTVSVVYRVTIYGTDAEV 140 (153)
Q Consensus 111 gEVR~i~ys~dGksVsVvyRVTi~GtDge~ 140 (153)
=.|.++.|.-+|+++ ..++|+...+|++
T Consensus 85 ~~V~~f~f~~~~~~l--~v~f~V~ti~G~~ 112 (112)
T PF10934_consen 85 TSVENFSFEWEGDSL--YVSFTVTTIYGEI 112 (112)
T ss_pred ceEEEEEEEEECCEE--EEEEEEEEecccC
Confidence 357888888888766 5556667777764
No 107
>PF12733 Cadherin-like: Cadherin-like beta sandwich domain
Probab=21.26 E-value=2.5e+02 Score=18.67 Aligned_cols=27 Identities=15% Similarity=0.184 Sum_probs=17.4
Q ss_pred CceeeeeeeEEEeeCCcEEEEEEEEEEE
Q 047987 107 PEWSGEVRNITYSVDGKTVSVVYRVTIY 134 (153)
Q Consensus 107 PgW~gEVR~i~ys~dGksVsVvyRVTi~ 134 (153)
+|+.-+|.=...+.||+ .+-+|+|+|+
T Consensus 60 ~G~n~~i~i~Vta~dg~-~~~tYti~V~ 86 (88)
T PF12733_consen 60 EGENTVITITVTAEDGT-TTKTYTITVT 86 (88)
T ss_pred CCCceEEEEEEEcCCCc-EEEEEEEEEE
Confidence 56555433344467884 6788999885
No 108
>TIGR02503 type_III_SycN type III secretion chaperone SycN. Members of this protein family are part of the machinery of bacterial type III secretion in a number of bacteria that target animal cells. In the well-studied system from Yersinia, a complex of this protein (SycN) and YscB (pfam07329) acts as a chaperone for the export of YopN (PubMed:10094626). YopN then acts to control effector protein secretion, in response to calcium levels, so that secretion occurs only after contact with the targeted eukaryotic cell.
Probab=21.15 E-value=95 Score=24.20 Aligned_cols=74 Identities=16% Similarity=0.251 Sum_probs=43.8
Q ss_pred cchhHHHHHHHhcccCCc---ccccccccCCcc--------------ccccchhhhhhhh------hhccCceeeeeeeE
Q 047987 60 ISRPLSEILKELNKNVPN---SLIKIRVEDGFS--------------MKYIPWHIVNRIM------NLHAPEWSGEVRNI 116 (153)
Q Consensus 60 itRPLaEILrdLnKrVPD---~lvktr~~~g~s--------------~~yIPWy~anRiL------~fyAPgW~gEVR~i 116 (153)
|.+-|.|..++|.=..|+ .+|.-..+++.+ .+-||||+++.++ ..|..+|--.+|-=
T Consensus 1 i~~~l~qF~q~mG~~~~~~~~~~i~l~~e~~gtL~iE~~~~~L~L~LAr~~p~hq~~~~~~raL~L~h~~~~~~~plr~G 80 (119)
T TIGR02503 1 IDRALAQFCQDLGLPTPAPLPRLAQLSMEQSGRLYVEQHDGTLLLWLARSLEWHQAEEALKRALTLCHAQRGGALPLRAG 80 (119)
T ss_pred CcHHHHHHHHHcCCCCCCCCCcceEEEecCCcEEEEEecCCEEEEEEeccCChhhhhHHHHHHHHHhccccCCCcceEee
Confidence 345677888888766555 133323332222 2469999996543 35777788777754
Q ss_pred EEeeCCcEEEEEEEEEEEecc
Q 047987 117 TYSVDGKTVSVVYRVTIYGTD 137 (153)
Q Consensus 117 ~ys~dGksVsVvyRVTi~GtD 137 (153)
...+|. ++.-+++-|.+
T Consensus 81 ~~ge~~----lvl~~~L~~r~ 97 (119)
T TIGR02503 81 LLGEQQ----LVLCTRLDGRS 97 (119)
T ss_pred ecCCCc----EEEEEEcCccc
Confidence 444333 56667766543
No 109
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=21.12 E-value=26 Score=26.26 Aligned_cols=15 Identities=20% Similarity=0.257 Sum_probs=12.8
Q ss_pred hhhhccCceeee--eee
Q 047987 101 IMNLHAPEWSGE--VRN 115 (153)
Q Consensus 101 iL~fyAPgW~gE--VR~ 115 (153)
+|-||+|-|||- |+.
T Consensus 30 vvv~f~a~wc~p~~Ck~ 46 (120)
T cd03065 30 CLLYHEPVESDKEAQKQ 46 (120)
T ss_pred EEEEECCCcCChhhChh
Confidence 578999999988 883
No 110
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=21.00 E-value=1.9e+02 Score=21.42 Aligned_cols=45 Identities=16% Similarity=0.126 Sum_probs=28.8
Q ss_pred hhhccCceeeeeeeEEEe--------------eCCcEEEEEEEEEEEecccceeeeccceec
Q 047987 102 MNLHAPEWSGEVRNITYS--------------VDGKTVSVVYRVTIYGTDAEVTSNSVNILL 149 (153)
Q Consensus 102 L~fyAPgW~gEVR~i~ys--------------~dGksVsVvyRVTi~GtDge~~REATGT~~ 149 (153)
.+|..|+..+ ++-.... .-|| -.+++.+.|+ .||++.=.++||-.
T Consensus 77 i~yl~P~~~~-~~a~~~~~~~~~~~~~~~~l~~~gr-~~~~~~~~v~-~~~~lvA~~~g~~~ 135 (138)
T TIGR02447 77 IRYLAPVTGD-PVANCEAPDLESWEAFLATLQRGGK-ARVKLEAQIS-SDGKLAATFSGEYV 135 (138)
T ss_pred eEEcCCcCCC-eEEEEEcCCHHHHHHHHHHHHhCCc-eEEEEEEEEE-ECCEEEEEEEEEEE
Confidence 3577898765 3322222 1254 5588999999 68887777777643
No 111
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=20.93 E-value=72 Score=21.15 Aligned_cols=56 Identities=11% Similarity=0.264 Sum_probs=40.8
Q ss_pred CccccccchhhhhhhhhhccCceeeeeeeEEEeeCCcEEEEEEEEEEEecccceeeeccce
Q 047987 87 GFSMKYIPWHIVNRIMNLHAPEWSGEVRNITYSVDGKTVSVVYRVTIYGTDAEVTSNSVNI 147 (153)
Q Consensus 87 g~s~~yIPWy~anRiL~fyAPgW~gEVR~i~ys~dGksVsVvyRVTi~GtDge~~REATGT 147 (153)
|....-|=||+-.+.|+...-+-+=.|+++..++.| .|.....=..|++.|+.+=+
T Consensus 9 g~P~P~v~W~kdg~~l~~~~~~~~L~i~~v~~~D~G-----~YtC~a~N~~g~~~~~~~~~ 64 (67)
T cd05863 9 AYPPPEFQWYKDGKLISGKHSQHSLQIKDVTEASAG-----TYTLVLWNSAAGLEKRISLE 64 (67)
T ss_pred EeCCCEEEEEECCEECcccCCcCEEEECCCCHHHCE-----EEEEEEEECCccEEEEEEEE
Confidence 455566789888888876555566677888888777 48888888888888776543
No 112
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=20.92 E-value=2.3e+02 Score=19.27 Aligned_cols=45 Identities=13% Similarity=0.171 Sum_probs=26.9
Q ss_pred hhhccCceeeeeeeEEE---eeCCcEEEEEEEEEEEecccceeeeccc
Q 047987 102 MNLHAPEWSGEVRNITY---SVDGKTVSVVYRVTIYGTDAEVTSNSVN 146 (153)
Q Consensus 102 L~fyAPgW~gEVR~i~y---s~dGksVsVvyRVTi~GtDge~~REATG 146 (153)
+.|+.|-+-|+.-.+.- .-+++.-.++++++++-.||++.=+++.
T Consensus 77 ~~f~~Pv~~gd~l~~~~~v~~~~~~~~~v~~~~~~~~~~g~~v~~g~~ 124 (128)
T cd03449 77 LRFLRPVFIGDTVTATVTVTEKREDKKRVTLETVCTNQNGEVVIEGEA 124 (128)
T ss_pred EEECCCccCCCEEEEEEEEEEEecCCCEEEEEEEEEeCCCCEEEEEEE
Confidence 47888888886422211 1112113477888888889998644443
No 113
>PF12034 DUF3520: Domain of unknown function (DUF3520); InterPro: IPR021908 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 180 amino acids in length. This domain is found associated with PF00092 from PFAM.
Probab=20.86 E-value=90 Score=25.85 Aligned_cols=20 Identities=25% Similarity=0.519 Sum_probs=17.6
Q ss_pred eCCcEEEEEEEEEEEecccc
Q 047987 120 VDGKTVSVVYRVTIYGTDAE 139 (153)
Q Consensus 120 ~dGksVsVvyRVTi~GtDge 139 (153)
+-|.+||..|-|+..|..++
T Consensus 50 GAGHsVTALYEi~p~g~~~~ 69 (183)
T PF12034_consen 50 GAGHSVTALYEIVPAGSKGE 69 (183)
T ss_pred CCCCEEEEEEEEEECCCCcc
Confidence 56999999999999998765
No 114
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=20.52 E-value=15 Score=25.48 Aligned_cols=15 Identities=27% Similarity=0.589 Sum_probs=8.1
Q ss_pred hhhhccCceeeeeeeE
Q 047987 101 IMNLHAPEWSGEVRNI 116 (153)
Q Consensus 101 iL~fyAPgW~gEVR~i 116 (153)
|+.|||| ||+-|+.+
T Consensus 25 lv~f~a~-wC~~C~~~ 39 (109)
T cd02993 25 LVVLYAP-WCPFCQAM 39 (109)
T ss_pred EEEEECC-CCHHHHHH
Confidence 4556654 56655533
Done!