Your job contains 1 sequence.
>047989
VYVRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNEDFYKGNMETEGYSSL
YIQRSGQKRDGCGIFYKISCAELLVEDRIYYNELVNSIKDGSSCGDDQNNTLAGGNNDSD
LKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVATTHLYWDPELAD
VKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVPGDK
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 047989
(223 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2028611 - symbol:AT1G31500 species:3702 "Arabi... 737 5.9e-73 1
TAIR|locus:2028696 - symbol:AT1G31530 "AT1G31530" species... 165 1.8e-26 2
ZFIN|ZDB-GENE-030131-6498 - symbol:angel2 "angel homolog ... 135 6.1e-15 2
MGI|MGI:1196310 - symbol:Angel2 "angel homolog 2 (Drosoph... 135 8.7e-15 2
FB|FBgn0011725 - symbol:twin "twin" species:7227 "Drosoph... 141 1.9e-14 2
WB|WBGene00000376 - symbol:ccr-4 species:6239 "Caenorhabd... 195 2.0e-14 1
TAIR|locus:2832132 - symbol:AT5G11350 "AT5G11350" species... 152 3.9e-13 2
POMBASE|SPCC31H12.08c - symbol:ccr4 "CCR4-Not complex sub... 138 5.0e-12 2
UNIPROTKB|Q9ULM6 - symbol:CNOT6 "CCR4-NOT transcription c... 170 7.0e-12 1
UNIPROTKB|E1C678 - symbol:CNOT6 "Uncharacterized protein"... 166 1.9e-11 1
RGD|1309128 - symbol:Cnot6l "CCR4-NOT transcription compl... 121 1.4e-10 2
MGI|MGI:2443154 - symbol:Cnot6l "CCR4-NOT transcription c... 121 1.4e-10 2
UNIPROTKB|E1BE73 - symbol:LOC100849029 "Uncharacterized p... 118 1.6e-10 2
POMBASE|SPBC9B6.11c - symbol:SPBC9B6.11c "CCR4/nocturin f... 133 1.7e-10 2
UNIPROTKB|E1C5L3 - symbol:CNOT6L "Uncharacterized protein... 116 2.9e-10 2
UNIPROTKB|Q96LI5 - symbol:CNOT6L "CCR4-NOT transcription ... 118 3.5e-10 2
MGI|MGI:1915987 - symbol:Angel1 "angel homolog 1 (Drosoph... 117 5.9e-10 2
SGD|S000000019 - symbol:CCR4 "Component of the CCR4-NOT t... 112 2.1e-09 2
ASPGD|ASPL0000009331 - symbol:ccr4 species:162425 "Emeric... 105 2.4e-08 3
UNIPROTKB|F1SGK9 - symbol:PDE12 "Uncharacterized protein"... 100 2.6e-08 2
UNIPROTKB|Q08DF7 - symbol:PDE12 "2',5'-phosphodiesterase ... 101 3.2e-08 2
CGD|CAL0002486 - symbol:CCR4 species:5476 "Candida albica... 101 3.7e-08 2
UNIPROTKB|Q5A761 - symbol:CCR4 "Glucose-repressible alcoh... 101 3.7e-08 2
TAIR|locus:504956231 - symbol:AT1G73875 "AT1G73875" speci... 146 4.8e-08 1
UNIPROTKB|E2R412 - symbol:PDE12 "Uncharacterized protein"... 99 5.6e-08 2
CGD|CAL0006120 - symbol:orf19.5527 species:5476 "Candida ... 128 6.2e-08 2
RGD|1310975 - symbol:Pde12 "phosphodiesterase 12" species... 100 6.6e-08 2
ZFIN|ZDB-GENE-071004-97 - symbol:zgc:171797 "zgc:171797" ... 145 9.0e-08 1
UNIPROTKB|Q6L8Q7 - symbol:PDE12 "2',5'-phosphodiesterase ... 101 1.0e-07 2
UNIPROTKB|F1S5Q4 - symbol:CNOT6 "Uncharacterized protein"... 144 1.2e-07 1
MGI|MGI:2443226 - symbol:Pde12 "phosphodiesterase 12" spe... 96 1.9e-07 2
TAIR|locus:2076426 - symbol:AT3G58560 "AT3G58560" species... 114 2.5e-07 2
UNIPROTKB|A6QR51 - symbol:CNOT6 "CNOT6 protein" species:9... 141 2.9e-07 1
SGD|S000004898 - symbol:NGL2 "Protein involved in 5.8S rR... 118 3.5e-07 2
TAIR|locus:2076446 - symbol:AT3G58580 "AT3G58580" species... 107 4.1e-07 2
UNIPROTKB|F1RYS2 - symbol:CNOT6L "Uncharacterized protein... 93 4.4e-07 2
UNIPROTKB|E2QS92 - symbol:CNOT6 "Uncharacterized protein"... 138 6.8e-07 1
UNIPROTKB|Q5BJ41 - symbol:cnot6 "CCR4-NOT transcription c... 135 1.6e-06 1
MGI|MGI:2144529 - symbol:Cnot6 "CCR4-NOT transcription co... 135 1.6e-06 1
RGD|1310783 - symbol:Cnot6 "CCR4-NOT transcription comple... 135 1.6e-06 1
ZFIN|ZDB-GENE-050522-302 - symbol:cnot6l "CCR4-NOT transc... 133 2.8e-06 1
UNIPROTKB|F1NGS9 - symbol:PDE12 "Uncharacterized protein"... 90 4.4e-06 2
SGD|S000004587 - symbol:NGL3 "3'-5' exonuclease specific ... 91 1.6e-05 2
ZFIN|ZDB-GENE-060519-25 - symbol:pde12 "phosphodiesterase... 90 0.00010 2
SGD|S000005402 - symbol:NGL1 "Putative endonuclease" spec... 116 0.00015 1
FB|FBgn0016762 - symbol:angel "angel" species:7227 "Droso... 110 0.00073 1
>TAIR|locus:2028611 [details] [associations]
symbol:AT1G31500 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0016787 "hydrolase activity" evidence=ISS]
Pfam:PF03372 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0046872 GO:GO:0006351
EMBL:AC074360 GO:GO:0003723 GO:GO:0090305 eggNOG:COG5239
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0004535 KO:K12603
EMBL:AC027135 EMBL:BT005746 EMBL:BT006109 EMBL:BX813786
EMBL:BX815872 EMBL:BX814736 EMBL:AK228566 IPI:IPI00516607
IPI:IPI00534982 IPI:IPI00548899 IPI:IPI00847028 IPI:IPI00915129
IPI:IPI00915138 RefSeq:NP_001077640.1 RefSeq:NP_174435.2
RefSeq:NP_973943.2 RefSeq:NP_973944.1 UniGene:At.40328
ProteinModelPortal:A8MS41 SMR:A8MS41 PaxDb:A8MS41 PRIDE:A8MS41
EnsemblPlants:AT1G31500.4 GeneID:840040 KEGG:ath:AT1G31500
TAIR:At1g31500 HOGENOM:HOG000265770 InParanoid:Q3ED43 OMA:CLKWKAR
PhylomeDB:A8MS41 ProtClustDB:CLSN2680732 Genevestigator:A8MS41
Uniprot:A8MS41
Length = 417
Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
Identities = 146/225 (64%), Positives = 177/225 (78%)
Query: 1 VYVRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNED-FYKGNMETEGYSS 59
VYV+SAL PHSP ACLKWK RS A+L+VLK+ ADF CLQE+D D FY+ NM++ GYS
Sbjct: 103 VYVKSALLPHSPPACLKWKARSHAILSVLKNLQADFFCLQEVDEYDSFYRNNMDSLGYSG 162
Query: 60 LYIQRSGQ-KRDGCGIFYKISCAELLVEDRIYYNELVNSIK-DGSSCGDDQNNTLAGGNN 117
+YIQR+GQ KRDGC IFYK SCAEL+ ++RI YN+LV+SIK D SC + + T +N
Sbjct: 163 IYIQRTGQRKRDGCAIFYKPSCAELVTKERIEYNDLVDSIKADSVSCSEQKIET----SN 218
Query: 118 DSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVATTHLYWDPE 177
+ G S+KDSRD LNDP VRLKRDCVGIMAAFR+ PF H+VIVA THLYWDPE
Sbjct: 219 E-----GKDSRKDSRD---LNDPLVRLKRDCVGIMAAFRINKPFQHIVIVANTHLYWDPE 270
Query: 178 LADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVPGD 222
LADVKLAQAKYL SRLA+F+T +SD ++C PS+++AGDFNS+PGD
Sbjct: 271 LADVKLAQAKYLLSRLAQFKTLISDEFECTPSLLLAGDFNSIPGD 315
>TAIR|locus:2028696 [details] [associations]
symbol:AT1G31530 "AT1G31530" species:3702 "Arabidopsis
thaliana" [GO:0005575 "cellular_component" evidence=ND] [GO:0016787
"hydrolase activity" evidence=ISS] Pfam:PF03372 EMBL:CP002684
EMBL:AC074360 InterPro:IPR005135 SUPFAM:SSF56219 KO:K12603
HOGENOM:HOG000265770 IPI:IPI00519106 RefSeq:NP_174438.1
UniGene:At.51858 ProteinModelPortal:Q9C6U7 PRIDE:Q9C6U7
EnsemblPlants:AT1G31530.1 GeneID:840043 KEGG:ath:AT1G31530
TAIR:At1g31530 InParanoid:Q9C6U7 OMA:FEADFIC PhylomeDB:Q9C6U7
ProtClustDB:CLSN2913551 ArrayExpress:Q9C6U7 Genevestigator:Q9C6U7
Uniprot:Q9C6U7
Length = 283
Score = 165 (63.1 bits), Expect = 1.8e-26, Sum P(2) = 1.8e-26
Identities = 36/72 (50%), Positives = 50/72 (69%)
Query: 151 IMAAFRLKGPFDHVVIVATTHLY-WDPEL-ADVKLAQAKYLSSRLAEFRTQVSDRYDCVP 208
+M AF++ PF+HVVI+A++HL P+ D+KLAQ K L + LA F+ +S +C P
Sbjct: 123 VMVAFKILKPFNHVVIIASSHLKSGKPDRWDDLKLAQVKTLMTELASFKEIISALTNCSP 182
Query: 209 SVIVAGDFNSVP 220
SVI+AGDFNS P
Sbjct: 183 SVILAGDFNSKP 194
Score = 153 (58.9 bits), Expect = 1.8e-26, Sum P(2) = 1.8e-26
Identities = 34/82 (41%), Positives = 50/82 (60%)
Query: 5 SALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDN-EDFYKGNMETEGYSSLYIQ 63
S +Y P + L W+ RS A+L +K+F ADF+CLQE+D F+ NME +GYS + I+
Sbjct: 5 SLMYVSPPESIL-WEKRSKAILDNIKNFEADFICLQEVDEYHSFFDRNMEAQGYSGIPIE 63
Query: 64 -RSGQKRDGCGIFYKISCAELL 84
+ G + C IF+K AE +
Sbjct: 64 NKEGYE---CAIFFKPKFAEFI 82
>ZFIN|ZDB-GENE-030131-6498 [details] [associations]
symbol:angel2 "angel homolog 2 (Drosophila)"
species:7955 "Danio rerio" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] Pfam:PF03372
ZFIN:ZDB-GENE-030131-6498 eggNOG:COG5239
GeneTree:ENSGT00550000074364 HOGENOM:HOG000033940
HOVERGEN:HBG057379 InterPro:IPR005135 SUPFAM:SSF56219 EMBL:BX649591
EMBL:BC124747 IPI:IPI00506952 RefSeq:NP_001025131.1
UniGene:Dr.105422 ProteinModelPortal:Q5RGT6
Ensembl:ENSDART00000036371 GeneID:562704 KEGG:dre:562704 CTD:90806
InParanoid:A0AUR1 OMA:EQTERES OrthoDB:EOG4255SF NextBio:20884542
ArrayExpress:Q5RGT6 Bgee:Q5RGT6 Uniprot:Q5RGT6
Length = 569
Score = 135 (52.6 bits), Expect = 6.1e-15, Sum P(2) = 6.1e-15
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 7 LYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNEDFYKG----NMETEGYSSLYI 62
LY H L W+NR ++ L+ + AD +CLQE+ ED YK ++E+ GY +
Sbjct: 218 LYRHCNPPVLDWRNRFPNIIKELEQYSADIMCLQEVQ-EDHYKQQIKPSLESLGYHCEFK 276
Query: 63 QRSGQKRDGCGIFYK 77
+R+G K DGC + +K
Sbjct: 277 RRTGLKPDGCAVIFK 291
Score = 118 (46.6 bits), Expect = 6.1e-15, Sum P(2) = 6.1e-15
Identities = 33/82 (40%), Positives = 47/82 (57%)
Query: 144 LKRDCVGIMAAFRLKGPFD-HV----VIVATTHLYWDPELADVKLAQAKYLSSRLAEFRT 198
+ RD VG++ R P D HV + VA THL ++P D+KLAQ L + ++ +
Sbjct: 313 MDRDNVGLIVLLR---PIDPHVSLSNICVANTHLLYNPRRGDIKLAQLAMLLAEISRV-S 368
Query: 199 QVSDRYDCVPSVIVAGDFNSVP 220
Q+ D C P V++ GDFNSVP
Sbjct: 369 QLPDSSVC-P-VLLCGDFNSVP 388
>MGI|MGI:1196310 [details] [associations]
symbol:Angel2 "angel homolog 2 (Drosophila)" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] Pfam:PF03372 MGI:MGI:1196310
eggNOG:COG5239 GeneTree:ENSGT00550000074364 HOGENOM:HOG000033940
HOVERGEN:HBG057379 InterPro:IPR005135 SUPFAM:SSF56219 CTD:90806
OrthoDB:EOG4255SF EMBL:AB041602 EMBL:AK088834 EMBL:AK135709
EMBL:AK158731 EMBL:AK166619 EMBL:AK169653 EMBL:BC024907
IPI:IPI00230182 IPI:IPI00757120 IPI:IPI00867916 IPI:IPI00867920
IPI:IPI00867925 RefSeq:NP_001185949.1 RefSeq:NP_067396.3
UniGene:Mm.289914 ProteinModelPortal:Q8K1C0 PhosphoSite:Q8K1C0
PaxDb:Q8K1C0 PRIDE:Q8K1C0 Ensembl:ENSMUST00000027947
Ensembl:ENSMUST00000066632 Ensembl:ENSMUST00000110899
Ensembl:ENSMUST00000123384 GeneID:52477 KEGG:mmu:52477
UCSC:uc007ebj.2 UCSC:uc007ebm.2 UCSC:uc007ebn.2 InParanoid:Q8K1C0
OMA:WEYICNH NextBio:309017 Bgee:Q8K1C0 CleanEx:MM_ANGEL2
Genevestigator:Q8K1C0 Uniprot:Q8K1C0
Length = 544
Score = 135 (52.6 bits), Expect = 8.7e-15, Sum P(2) = 8.7e-15
Identities = 34/84 (40%), Positives = 45/84 (53%)
Query: 5 SALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNEDFY----KGNMETEGYSSL 60
S LY H L W R +L +K F AD LCLQE+ ED Y + ++E+ GY
Sbjct: 184 SHLYRHCRRPVLHWSFRFPNILKEIKHFDADVLCLQEVQ-EDHYGTEIRPSLESLGYHCE 242
Query: 61 YIQRSGQKRDGCGIFYKISCAELL 84
Y ++G+K DGC I +K S LL
Sbjct: 243 YKMKTGRKPDGCAICFKHSRFSLL 266
Score = 116 (45.9 bits), Expect = 8.7e-15, Sum P(2) = 8.7e-15
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 144 LKRDCVGIMAAFRLKGP--FDHVVIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVS 201
L RD +G++ + K P + +A THL ++P D+KL Q L + +A T
Sbjct: 281 LDRDNIGLVLLLQPKIPRAASPSICIANTHLLYNPRRGDIKLTQLAMLLAEIANV-THRK 339
Query: 202 DRYDCVPSVIVAGDFNSVPG 221
D C P +++ GDFNSVPG
Sbjct: 340 DGSSC-P-IVMCGDFNSVPG 357
>FB|FBgn0011725 [details] [associations]
symbol:twin "twin" species:7227 "Drosophila melanogaster"
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=ISS]
[GO:0030014 "CCR4-NOT complex" evidence=ISS;IDA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 EMBL:AE014297
GO:GO:0005737 InterPro:IPR003591 SMART:SM00369 GO:GO:0048477
InterPro:IPR025875 Pfam:PF12799 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0030014 GO:GO:0000289
KO:K12603 OMA:YMLDNLA UniGene:Dm.33521 GeneID:42880
KEGG:dme:Dmel_CG31137 CTD:42880 FlyBase:FBgn0011725 ChiTaRS:twin
GenomeRNAi:42880 NextBio:831058 EMBL:BT010039 RefSeq:NP_732964.1
SMR:Q8IMX1 STRING:Q8IMX1 EnsemblMetazoa:FBtr0084569 UCSC:CG31137-RC
InParanoid:Q8IMX1 Uniprot:Q8IMX1
Length = 567
Score = 141 (54.7 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 32/113 (28%), Positives = 57/113 (50%)
Query: 2 YVRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNEDFYK---GNMETEGYS 58
Y +Y + PS L W+ R +++ ++ + AD + LQE++ E FY ++ +GY
Sbjct: 219 YATRQMYGYCPSWALCWEYRKKSIIDEIRHYAADIISLQEIETEQFYHFFLPELKNDGYE 278
Query: 59 SLYIQRSGQKR---------DGCGIFYKISCAELLVEDRIYYNELVNSIKDGS 102
++ +S K DGC IF++ S L+ E I +N+L + +GS
Sbjct: 279 GIFSPKSRAKTMSELERKYVDGCAIFFRASKFTLIKESLIEFNQLAMANAEGS 331
Score = 105 (42.0 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 29/94 (30%), Positives = 46/94 (48%)
Query: 144 LKRDCVGIMAAFRLKG----PFDHV------VIVATTHLYWDPELADVKLAQAKYLSSRL 193
+ +D +G+ A ++K P V ++V T H++WDPE DVKL Q LS+ L
Sbjct: 339 MPKDNIGLAALLKVKENAWEPMSEVTQISQPLLVCTAHIHWDPEFCDVKLIQTMMLSNEL 398
Query: 194 AEFRTQVSDRY------DC-VPSVIVAGDFNSVP 220
+ S + D +++ GDFNS+P
Sbjct: 399 KTIIDEASHSFRPGHKNDSNAVQLLLCGDFNSLP 432
>WB|WBGene00000376 [details] [associations]
symbol:ccr-4 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040002 "collagen and cuticulin-based cuticle
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
Pfam:PF03372 GO:GO:0008340 GO:GO:0009792 GO:GO:0040011
GO:GO:0040018 GO:GO:0000003 eggNOG:COG5239
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0040002 KO:K12603 EMBL:Z68753 RefSeq:NP_001129877.1
UniGene:Cel.6023 ProteinModelPortal:B3GWC3 SMR:B3GWC3 STRING:B3GWC3
PaxDb:B3GWC3 EnsemblMetazoa:ZC518.3d GeneID:178184
KEGG:cel:CELE_ZC518.3 CTD:178184 WormBase:ZC518.3d
InParanoid:B3GWC3 NextBio:900070 ArrayExpress:B3GWC3 Uniprot:B3GWC3
Length = 677
Score = 195 (73.7 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 61/229 (26%), Positives = 112/229 (48%)
Query: 8 YPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNEDF---YKGNMETEGYSSLYIQR 64
Y + PS L W+ R ++ ++++ AD + LQE++ E F ++ ++ GY+ ++ +
Sbjct: 309 YSYCPSWALNWEYRKGLIIKEIRTYEADVITLQEVETEQFRTLFQPELKQLGYAGIFEAK 368
Query: 65 S-----GQKR----DGCGIFYKISCAELLVEDRIYYNELVNSIKDGSSCGDDQNNTLAGG 115
S G++ DGC IF+K+ ++ D+ Y E + +S ++ N +
Sbjct: 369 SRAKTMGEEERKYVDGCAIFWKVDKFDM---DKQYLFEFSSVAMKKASTSENMLNRVMPR 425
Query: 116 NNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVATTHLYWD 175
+N L + K+ + L + + + VG P ++VAT H++WD
Sbjct: 426 DNIG-LCAVLKIKESVYANKFLGRMQIPMNDNVVG--------NP----LVVATAHIHWD 472
Query: 176 PELADVKLAQAKYLSSRLAEFRTQVSDRYDC----VPSVIVAGDFNSVP 220
PE DVKL Q+ L+ ++ +VS +Y VP V++ GDFNS+P
Sbjct: 473 PEFCDVKLVQSMMLTHEVSRVLEEVSKKYQITQQQVP-VLICGDFNSLP 520
>TAIR|locus:2832132 [details] [associations]
symbol:AT5G11350 "AT5G11350" species:3702 "Arabidopsis
thaliana" [GO:0003824 "catalytic activity" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] Pfam:PF03372 GO:GO:0005634
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
eggNOG:COG5239 InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0004535
EMBL:AL360314 EMBL:AY069916 EMBL:AY143977 IPI:IPI00526280
RefSeq:NP_196696.2 UniGene:At.27820 ProteinModelPortal:Q8VYU4
SMR:Q8VYU4 PaxDb:Q8VYU4 PRIDE:Q8VYU4 EnsemblPlants:AT5G11350.1
GeneID:831006 KEGG:ath:AT5G11350 TAIR:At5g11350
HOGENOM:HOG000111455 InParanoid:Q8VYU4 OMA:LYFHIPR PhylomeDB:Q8VYU4
ProtClustDB:CLSN2690149 Genevestigator:Q8VYU4 Uniprot:Q8VYU4
Length = 754
Score = 152 (58.6 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
Identities = 31/89 (34%), Positives = 51/89 (57%)
Query: 6 ALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNEDFYKGNMETEGYSSLYIQRS 65
+LY H P L W R ++ L + AD +CLQE+D + M+ GYS+++ R+
Sbjct: 202 SLYFHIPRNMLSWGWRKSKLVFELSLWSADIMCLQEVDKFQDLEEEMKHRGYSAIWKMRT 261
Query: 66 GQKRDGCGIFYKISCAELLVEDRIYYNEL 94
G DGC IF++ + +L+ E+ I +N+L
Sbjct: 262 GNAVDGCAIFWRSNRFKLVHEESIQFNQL 290
Score = 79 (32.9 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 163 HVVIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVP 220
H V++ H+ ++P+ D KL Q + L + VS +D P +++ GDFN P
Sbjct: 325 HRVVICNIHVLFNPKRGDFKLGQVRTLLDKAHA----VSKLWDDAP-IVLCGDFNCTP 377
>POMBASE|SPCC31H12.08c [details] [associations]
symbol:ccr4 "CCR4-Not complex subunit Ccr4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006354 "DNA-dependent transcription, elongation" evidence=IC]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0030015 "CCR4-NOT core complex" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] InterPro:IPR001611
PROSITE:PS51450 PomBase:SPCC31H12.08c Pfam:PF03372 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0046872 eggNOG:COG4886 GO:GO:0003723 GO:GO:0090305
InterPro:IPR025875 Pfam:PF12799 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0004535 GO:GO:0000289 GO:GO:0030015 KO:K12603
HOGENOM:HOG000294222 OMA:CLQEIDQ OrthoDB:EOG4Z39P3 PIR:T41296
RefSeq:NP_587901.1 ProteinModelPortal:O74874 STRING:O74874
EnsemblFungi:SPCC31H12.08c.1 GeneID:2538913 KEGG:spo:SPCC31H12.08c
NextBio:20800091 GO:GO:0006354 Uniprot:O74874
Length = 690
Score = 138 (53.6 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 34/104 (32%), Positives = 53/104 (50%)
Query: 2 YVRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNED---FYKGNMETEGYS 58
Y S LY ++PS L W R D ++ L + AD +CLQE+D E+ F+ M +GY
Sbjct: 348 YATSTLYGYTPSWALSWSYRKDLIMQELGGYNADIICLQEVDVENYDTFFAPQMSLKGYK 407
Query: 59 SLYIQRSG-------QKR--DGCGIFYKISCAELLVEDRIYYNE 93
++ +S ++R DGC F+K S + + I YN+
Sbjct: 408 GVHFPKSRVRTMNEVERRIVDGCATFFKTSKYVMHEKMVIEYNQ 451
Score = 88 (36.0 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 165 VIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPS 209
+IVA H++WDP+ DVK+ Q L +A+ T+ + +PS
Sbjct: 491 LIVANCHIHWDPQFRDVKVIQVAMLMDEIAQVATKFRNMPSKIPS 535
Score = 49 (22.3 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 186 AKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVPG 221
+K S +L + R + Y +P +++ GDFNSV G
Sbjct: 531 SKIPSDQLKDERPTYPE-YLKIP-ILICGDFNSVQG 564
>UNIPROTKB|Q9ULM6 [details] [associations]
symbol:CNOT6 "CCR4-NOT transcription complex subunit 6"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:2000327 "positive regulation of ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IDA]
[GO:0035195 "gene silencing by miRNA" evidence=TAS] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=IDA] [GO:0030014
"CCR4-NOT complex" evidence=IDA] [GO:0000288 "nuclear-transcribed
mRNA catabolic process, deadenylation-dependent decay"
evidence=TAS] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=TAS] [GO:0004535 "poly(A)-specific
ribonuclease activity" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001611 PROSITE:PS51450
Pfam:PF03372 GO:GO:0005829 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 eggNOG:COG4886 InterPro:IPR003591 SMART:SM00369
GO:GO:0006351 GO:GO:0003723 InterPro:IPR005135 SUPFAM:SSF56219
EMBL:CH471165 GO:GO:0004535 GO:GO:0000289 KO:K12603 OMA:YATSDTY
HOGENOM:HOG000294222 CleanEx:HS_CCR4 HOVERGEN:HBG052641
OrthoDB:EOG43TZV7 EMBL:AB033020 EMBL:BC152469 IPI:IPI00008205
RefSeq:NP_056270.2 UniGene:Hs.608380 ProteinModelPortal:Q9ULM6
SMR:Q9ULM6 DIP:DIP-46838N IntAct:Q9ULM6 STRING:Q9ULM6
PhosphoSite:Q9ULM6 DMDM:46396033 PRIDE:Q9ULM6 DNASU:57472
Ensembl:ENST00000261951 Ensembl:ENST00000393356 GeneID:57472
KEGG:hsa:57472 UCSC:uc003mlx.3 CTD:57472 GeneCards:GC05P179921
HGNC:HGNC:14099 HPA:HPA044568 MIM:608951 neXtProt:NX_Q9ULM6
PharmGKB:PA26677 InParanoid:Q9ULM6 PhylomeDB:Q9ULM6
GenomeRNAi:57472 NextBio:63703 ArrayExpress:Q9ULM6 Bgee:Q9ULM6
CleanEx:HS_CNOT6 Genevestigator:Q9ULM6 GermOnline:ENSG00000113300
GO:GO:2000327 Uniprot:Q9ULM6
Length = 557
Score = 170 (64.9 bits), Expect = 7.0e-12, P = 7.0e-12
Identities = 60/239 (25%), Positives = 104/239 (43%)
Query: 2 YVRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNEDFYKG---NMETEGYS 58
Y LY + PS L W R A++ + S AD + LQE++ E +Y ++ GY+
Sbjct: 201 YATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIVSLQEVETEQYYSFFLVELKERGYN 260
Query: 59 SLYIQRSG------QKR---DGCGIFYKISCAELLVEDRIYYNELVNSIKDGSSCGDDQN 109
+ +S Q+R DGC IF+K L+ + + +N+L + +GS N
Sbjct: 261 GFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAMANSEGSEAM--LN 318
Query: 110 NTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVAT 169
+ KD+ L + L+++ + + + G +++VA
Sbjct: 319 RVMT---------------KDNIGVAVL----LELRKESIEMPSGKPHLGTEKQLILVAN 359
Query: 170 THLYWDPELADVKLAQAKYLSSRLAEF--------RTQVSDRYDCVPSVIVAGDFNSVP 220
H++WDPE +DVKL Q S + ++ V + +P V+ A D NS+P
Sbjct: 360 AHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRNLKSSVLGEFGTIPLVLCA-DLNSLP 417
>UNIPROTKB|E1C678 [details] [associations]
symbol:CNOT6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:2000327 "positive regulation of ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IEA]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 InterPro:IPR003591
SMART:SM00369 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 KO:K12603 OMA:YATSDTY CTD:57472 EMBL:AADN02028573
EMBL:AADN02028574 EMBL:AADN02028575 IPI:IPI00583544
RefSeq:XP_414612.3 UniGene:Gga.56102 Ensembl:ENSGALT00000009699
GeneID:416293 KEGG:gga:416293 Uniprot:E1C678
Length = 557
Score = 166 (63.5 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 60/239 (25%), Positives = 104/239 (43%)
Query: 2 YVRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNEDFYKG---NMETEGYS 58
Y LY + PS L W+ R A++ + S AD + LQE++ E +Y ++ GY+
Sbjct: 201 YATRQLYGYCPSWALNWEYRKKAIMQEILSCNADIISLQEVETEQYYSFFLVELKERGYN 260
Query: 59 SLYIQRSG------QKR---DGCGIFYKISCAELLVEDRIYYNELVNSIKDGSSCGDDQN 109
+ +S Q+R DGC IF+K L+ + + +N+L + +GS N
Sbjct: 261 GFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAMANSEGSEAM--LN 318
Query: 110 NTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVAT 169
+ KD+ L + L+++ + + + G +V+VA
Sbjct: 319 RVMT---------------KDNIGVAVL----LELRKELIEMSSGKPHLGMEKQLVLVAN 359
Query: 170 THLYWDPELADVKLAQAKYLSSRLAEF--------RTQVSDRYDCVPSVIVAGDFNSVP 220
H++WDP+ +DVKL Q S + + V+ +P V+ A D NS+P
Sbjct: 360 AHMHWDPDYSDVKLVQTMMFLSEVKNIIDKASRSLKPGVAGELGTIPLVLCA-DLNSLP 417
>RGD|1309128 [details] [associations]
symbol:Cnot6l "CCR4-NOT transcription complex, subunit 6-like"
species:10116 "Rattus norvegicus" [GO:0000288 "nuclear-transcribed
mRNA catabolic process, deadenylation-dependent decay"
evidence=IEA;ISO] [GO:0004535 "poly(A)-specific ribonuclease
activity" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA;ISO] [GO:0030014 "CCR4-NOT complex"
evidence=ISO] [GO:0061157 "mRNA destabilization" evidence=IEA;ISO]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 RGD:1309128
GO:GO:0005737 GO:GO:0008284 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0000288 GO:GO:0004535
GO:GO:0061157 IPI:IPI00363898 Ensembl:ENSRNOT00000002843
Uniprot:F1M642
Length = 553
Score = 121 (47.7 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 30/113 (26%), Positives = 55/113 (48%)
Query: 2 YVRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNEDFYK---GNMETEGYS 58
Y LY + PS L W+ R ++ + ++ AD + LQE++ E ++ ++ GY
Sbjct: 199 YATRQLYGYCPSWALNWEYRKKGIMEEIVNWDADIISLQEVETEQYFTLFLPALKDRGYD 258
Query: 59 SLYIQRSG------QKR---DGCGIFYKISCAELLVEDRIYYNELVNSIKDGS 102
+ +S Q+R DGC IF+K L+ + + +N++ + DGS
Sbjct: 259 GFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMANSDGS 311
Score = 93 (37.8 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 164 VVIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRY-------DCVPSVIVAGDF 216
++IVA H++WDPE +DVKL Q S + + S R + +P V+ A D
Sbjct: 351 LLIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCA-DL 409
Query: 217 NSVP 220
NS+P
Sbjct: 410 NSLP 413
>MGI|MGI:2443154 [details] [associations]
symbol:Cnot6l "CCR4-NOT transcription complex, subunit
6-like" species:10090 "Mus musculus" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IMP] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0030014 "CCR4-NOT complex" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0061157 "mRNA
destabilization" evidence=IMP] InterPro:IPR001611 PROSITE:PS51450
Pfam:PF03372 MGI:MGI:2443154 GO:GO:0005737 GO:GO:0046872
GO:GO:0008284 GO:GO:0006397 eggNOG:COG4886
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0000288 GO:GO:0004535 KO:K12603 HOGENOM:HOG000294222
CTD:246175 HOVERGEN:HBG052641 OMA:YMLDNLA GO:GO:0061157
EMBL:AK030112 EMBL:AK151728 EMBL:AC129600 EMBL:AC149285
EMBL:BC018506 IPI:IPI00124574 IPI:IPI00828817 IPI:IPI00881655
RefSeq:NP_659159.1 RefSeq:NP_849185.2 UniGene:Mm.28374
UniGene:Mm.384746 HSSP:P24014 ProteinModelPortal:Q8VEG6 SMR:Q8VEG6
DIP:DIP-46842N IntAct:Q8VEG6 STRING:Q8VEG6 PhosphoSite:Q8VEG6
PRIDE:Q8VEG6 Ensembl:ENSMUST00000113005 Ensembl:ENSMUST00000122003
Ensembl:ENSMUST00000155901 GeneID:231464 KEGG:mmu:231464
UCSC:uc008yfd.1 UCSC:uc008yfe.1 UCSC:uc008yfg.1 InParanoid:Q8VEG6
NextBio:380566 Bgee:Q8VEG6 CleanEx:MM_CNOT6L Genevestigator:Q8VEG6
Uniprot:Q8VEG6
Length = 555
Score = 121 (47.7 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 30/113 (26%), Positives = 55/113 (48%)
Query: 2 YVRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNEDFYK---GNMETEGYS 58
Y LY + PS L W+ R ++ + ++ AD + LQE++ E ++ ++ GY
Sbjct: 201 YATRQLYGYCPSWALNWEYRKKGIMEEIVNWDADIISLQEVETEQYFTLFLPALKDRGYD 260
Query: 59 SLYIQRSG------QKR---DGCGIFYKISCAELLVEDRIYYNELVNSIKDGS 102
+ +S Q+R DGC IF+K L+ + + +N++ + DGS
Sbjct: 261 GFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMANSDGS 313
Score = 93 (37.8 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 164 VVIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRY-------DCVPSVIVAGDF 216
++IVA H++WDPE +DVKL Q S + + S R + +P V+ A D
Sbjct: 353 LLIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCA-DL 411
Query: 217 NSVP 220
NS+P
Sbjct: 412 NSLP 415
>UNIPROTKB|E1BE73 [details] [associations]
symbol:LOC100849029 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0061157 "mRNA destabilization" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] Pfam:PF03372
GO:GO:0005737 GO:GO:0008284 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0000288 GO:GO:0004535
OMA:YMLDNLA GO:GO:0061157 EMBL:DAAA02018160 IPI:IPI00694976
Ensembl:ENSBTAT00000005694 Uniprot:E1BE73
Length = 422
Score = 118 (46.6 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 30/113 (26%), Positives = 54/113 (47%)
Query: 2 YVRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNEDFYK---GNMETEGYS 58
Y LY + PS L W+ R ++ + + AD + LQE++ E ++ ++ GY
Sbjct: 68 YATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQYFTLFLPALKERGYD 127
Query: 59 SLYIQRSG------QKR---DGCGIFYKISCAELLVEDRIYYNELVNSIKDGS 102
+ +S Q+R DGC IF+K L+ + + +N++ + DGS
Sbjct: 128 GFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMANSDGS 180
Score = 93 (37.8 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 164 VVIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRY-------DCVPSVIVAGDF 216
++IVA H++WDPE +DVKL Q S + + S R + +P V+ A D
Sbjct: 220 LLIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCA-DL 278
Query: 217 NSVP 220
NS+P
Sbjct: 279 NSLP 282
>POMBASE|SPBC9B6.11c [details] [associations]
symbol:SPBC9B6.11c "CCR4/nocturin family
endoribonuclease (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0004521 "endoribonuclease activity" evidence=ISO]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=ISO] PomBase:SPBC9B6.11c Pfam:PF03372 GO:GO:0005829
GO:GO:0005634 EMBL:CU329671 GO:GO:0004527 GO:GO:0004521
eggNOG:COG5239 InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0006364
HOGENOM:HOG000248147 KO:K14812 OMA:MRAISLY OrthoDB:EOG4K3Q4X
PIR:T40792 RefSeq:NP_595753.1 ProteinModelPortal:Q9Y7M8
EnsemblFungi:SPBC9B6.11c.1 GeneID:2541286 KEGG:spo:SPBC9B6.11c
NextBio:20802397 Uniprot:Q9Y7M8
Length = 502
Score = 133 (51.9 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 34/94 (36%), Positives = 52/94 (55%)
Query: 3 VRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNE---DFYKGNMETEGYSS 59
+R +++PHS A LKWKNRS + L + C+QE+D E +FYK + GY
Sbjct: 134 IRRSMFPHSGEA-LKWKNRSRMLANELTYYSPTLGCMQEVDAEFVPNFYKKLLGGLGYEL 192
Query: 60 LYIQRSGQKRDGCGIFYKISCAELLVEDRIYYNE 93
+I+ G K G IF+K S + + + IYY++
Sbjct: 193 HFIKGEG-KTHGIMIFWKSSLFKKVQDLTIYYDD 225
Score = 76 (31.8 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 26/91 (28%), Positives = 42/91 (46%)
Query: 133 DHGDLNDPYVRLKRDCVGIMAAF-RLKGPFDHVVIVATTHLYWDPELADVKLAQAKYLSS 191
DH +L R+ +G R+ P + +ATTHL+W P + +L Q L
Sbjct: 225 DHDELPG---RMNTKNIGCCVRLERVDDP-SRGLFLATTHLFWHPYGSYERLRQGAILVK 280
Query: 192 RLAEFRTQVSDRYDCVPSVIVAGDFNSVPGD 222
+ +++ + P V +AGDFN+ P D
Sbjct: 281 EV----NKMAQSHPSWP-VFIAGDFNTEPFD 306
>UNIPROTKB|E1C5L3 [details] [associations]
symbol:CNOT6L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0061157 "mRNA destabilization"
evidence=IEA] InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372
GO:GO:0005737 GO:GO:0008284 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0000288 GO:GO:0004535
OMA:YMLDNLA GO:GO:0061157 EMBL:AADN02016133 IPI:IPI00594662
Ensembl:ENSGALT00000016820 NextBio:20825132 Uniprot:E1C5L3
Length = 549
Score = 116 (45.9 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 29/113 (25%), Positives = 54/113 (47%)
Query: 2 YVRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNEDFYK---GNMETEGYS 58
Y LY + PS L W+ R ++ + S AD + LQE++ E ++ ++ GY
Sbjct: 196 YATRQLYGYCPSWALNWEYRKKGIMEEIVSCDADIISLQEVETEQYFTLFLPALKERGYD 255
Query: 59 SLYIQRSG-------QKR--DGCGIFYKISCAELLVEDRIYYNELVNSIKDGS 102
+ +S +K+ DGC IF+K L+ + + +N++ + +GS
Sbjct: 256 GFFSPKSRAKIMSEQEKKHVDGCAIFFKTEKFSLVQKHTVEFNQVAMANSEGS 308
Score = 96 (38.9 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 164 VVIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRY-------DCVPSVIVAGDF 216
++IVA H++WDPE +DVKL Q S L + S R + +P V+ A D
Sbjct: 347 LLIVANAHMHWDPEYSDVKLIQTMMFVSELKNILEKASSRPGSPTADPNSIPLVLCA-DL 405
Query: 217 NSVP 220
NS+P
Sbjct: 406 NSLP 409
>UNIPROTKB|Q96LI5 [details] [associations]
symbol:CNOT6L "CCR4-NOT transcription complex subunit
6-like" species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0061157 "mRNA destabilization"
evidence=IEA] [GO:0030014 "CCR4-NOT complex" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR001611
PROSITE:PS51450 Pfam:PF03372 GO:GO:0005829 GO:GO:0046872
GO:GO:0008284 eggNOG:COG4886 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0004535 GO:GO:0000289 KO:K12603 HOGENOM:HOG000294222
CTD:246175 HOVERGEN:HBG052641 EMBL:AK058188 EMBL:AC104701
EMBL:AL133112 IPI:IPI00164061 IPI:IPI00878418 PIR:T42705
RefSeq:NP_653172.2 UniGene:Hs.592519 PDB:3NGN PDB:3NGO PDB:3NGQ
PDBsum:3NGN PDBsum:3NGO PDBsum:3NGQ ProteinModelPortal:Q96LI5
SMR:Q96LI5 DIP:DIP-46837N IntAct:Q96LI5 STRING:Q96LI5
PhosphoSite:Q96LI5 DMDM:166216089 PRIDE:Q96LI5 DNASU:246175
Ensembl:ENST00000264903 Ensembl:ENST00000504123 GeneID:246175
KEGG:hsa:246175 UCSC:uc003hks.3 UCSC:uc003hkt.1
GeneCards:GC04M078634 HGNC:HGNC:18042 HPA:HPA042688
neXtProt:NX_Q96LI5 PharmGKB:PA38480 InParanoid:Q96LI5
EvolutionaryTrace:Q96LI5 GenomeRNAi:246175 NextBio:91870
ArrayExpress:Q96LI5 Bgee:Q96LI5 CleanEx:HS_CNOT6L
Genevestigator:Q96LI5 GO:GO:0061157 Uniprot:Q96LI5
Length = 555
Score = 118 (46.6 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 30/113 (26%), Positives = 54/113 (47%)
Query: 2 YVRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNEDFYK---GNMETEGYS 58
Y LY + PS L W+ R ++ + + AD + LQE++ E ++ ++ GY
Sbjct: 201 YATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQYFTLFLPALKERGYD 260
Query: 59 SLYIQRSG------QKR---DGCGIFYKISCAELLVEDRIYYNELVNSIKDGS 102
+ +S Q+R DGC IF+K L+ + + +N++ + DGS
Sbjct: 261 GFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMANSDGS 313
Score = 93 (37.8 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 164 VVIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRY-------DCVPSVIVAGDF 216
++IVA H++WDPE +DVKL Q S + + S R + +P V+ A D
Sbjct: 353 LLIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCA-DL 411
Query: 217 NSVP 220
NS+P
Sbjct: 412 NSLP 415
>MGI|MGI:1915987 [details] [associations]
symbol:Angel1 "angel homolog 1 (Drosophila)" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] Pfam:PF03372 MGI:MGI:1915987
EMBL:AC102689 EMBL:BC019148 EMBL:AK220354 IPI:IPI00122555
RefSeq:NP_653107.2 UniGene:Mm.63979 ProteinModelPortal:Q8VCU0
PhosphoSite:Q8VCU0 PaxDb:Q8VCU0 PRIDE:Q8VCU0 DNASU:68737
Ensembl:ENSMUST00000021682 GeneID:68737 KEGG:mmu:68737
UCSC:uc011ypj.1 CTD:23357 eggNOG:COG5239
GeneTree:ENSGT00550000074364 HOGENOM:HOG000033940
HOVERGEN:HBG057379 InParanoid:Q8VCU0 OMA:LYNFIRD OrthoDB:EOG4229KD
ChiTaRS:ANGEL1 NextBio:327814 Bgee:Q8VCU0 Genevestigator:Q8VCU0
InterPro:IPR005135 SUPFAM:SSF56219 Uniprot:Q8VCU0
Length = 667
Score = 117 (46.2 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 30/91 (32%), Positives = 43/91 (47%)
Query: 5 SALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNEDFYKGNMETE----GYSSL 60
S LY H L W R ++ + + D LCLQE+ ED Y +E G++
Sbjct: 259 SELYLHCHPDILNWNYRFANLMQEFQHWDPDILCLQEVQ-EDHYWEQLEPSLRMMGFTCF 317
Query: 61 YIQRSGQKRDGCGIFYKISCAELLVEDRIYY 91
Y +R+G K DGC + YK + LL + Y
Sbjct: 318 YKRRTGCKTDGCAVCYKPTRFRLLCASPVEY 348
Score = 94 (38.1 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 30/83 (36%), Positives = 44/83 (53%)
Query: 144 LKRDCVGIMAAFRLKGP--FDHVVI----VATTHLYWDPELADVKLAQAKYLSSRLAEFR 197
L RD VG++ + P V + VA TH+ ++P DVKLAQ L + + +
Sbjct: 356 LNRDNVGLVLLLQPLVPEGLGQVSVAPLCVANTHVLYNPRRGDVKLAQMAILLAEVDKV- 414
Query: 198 TQVSDRYDCVPSVIVAGDFNSVP 220
++SD C P +I+ GD NSVP
Sbjct: 415 ARLSDGSHC-P-IILCGDLNSVP 435
>SGD|S000000019 [details] [associations]
symbol:CCR4 "Component of the CCR4-NOT transcriptional
complex" species:4932 "Saccharomyces cerevisiae" [GO:0030015
"CCR4-NOT core complex" evidence=IPI] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IDA;IPI] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000289 "nuclear-transcribed mRNA poly(A)
tail shortening" evidence=IMP;IDA] [GO:0000288 "nuclear-transcribed
mRNA catabolic process, deadenylation-dependent decay"
evidence=IGI;IMP;IDA] [GO:0007089 "traversing start control point
of mitotic cell cycle" evidence=IMP] [GO:0016593 "Cdc73/Paf1
complex" evidence=IPI] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=IGI;IMP] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=IEA] [GO:0048478 "replication fork protection"
evidence=IGI] [GO:0006260 "DNA replication" evidence=IGI]
[GO:0000076 "DNA replication checkpoint" evidence=IGI] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IGI;IMP;IDA] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IPI] InterPro:IPR001611 PROSITE:PS51450
SGD:S000000019 Pfam:PF03372 GO:GO:0005634 EMBL:L05146 EMBL:BK006935
GO:GO:0046872 eggNOG:COG4886 InterPro:IPR003591 SMART:SM00369
GO:GO:0003723 GO:GO:0006368 GO:GO:0000932 InterPro:IPR025875
Pfam:PF12799 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0048478 GO:GO:0032968 GO:GO:0004535
GO:GO:0000289 GO:GO:0030015 GO:GO:0007089 KO:K12603
HOGENOM:HOG000294222 OrthoDB:EOG4Z39P3 EMBL:S50459 PIR:S36713
RefSeq:NP_009381.1 PDB:4B8C PDBsum:4B8C ProteinModelPortal:P31384
SMR:P31384 DIP:DIP-2522N IntAct:P31384 MINT:MINT-615079
STRING:P31384 PaxDb:P31384 PeptideAtlas:P31384 EnsemblFungi:YAL021C
GeneID:851212 KEGG:sce:YAL021C OMA:CMQEVET NextBio:968091
Genevestigator:P31384 GermOnline:YAL021C GO:GO:0000175
GO:GO:0000076 Uniprot:P31384
Length = 837
Score = 112 (44.5 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 26/103 (25%), Positives = 55/103 (53%)
Query: 2 YVRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDN---EDFYKGNMETEGYS 58
Y +Y ++PS L W R + + + S+ +D LCLQE+++ E+++ ++ GY+
Sbjct: 517 YATPKMYRYTPSWALSWDYRRNKLKEQILSYDSDLLCLQEVESKTFEEYWVPLLDKHGYT 576
Query: 59 SLYIQRS---------GQKRDGCGIFYKISCAELLVEDRIYYN 92
++ ++ +K DGC IF+K +L+ +D + ++
Sbjct: 577 GIFHAKARAKTMHSKDSKKVDGCCIFFKRDQFKLITKDAMDFS 619
Score = 97 (39.2 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 33/102 (32%), Positives = 44/102 (43%)
Query: 123 SGSWSK--KDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVATTHLYWDPELAD 180
SG+W K K R LN + +D V + + P + TTHL+WDP+ D
Sbjct: 619 SGAWMKHKKFQRTEDYLNRA---MNKDNVALFLKLQ-HIPSGDTIWAVTTHLHWDPKFND 674
Query: 181 VKLAQAKYLSSRLAEF---RTQVSDRYDCVP-SVIVAGDFNS 218
VK Q L L T + R D V++ GDFNS
Sbjct: 675 VKTFQVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNS 716
>ASPGD|ASPL0000009331 [details] [associations]
symbol:ccr4 species:162425 "Emericella nidulans"
[GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IMP] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0046872 eggNOG:COG4886
GO:GO:0006351 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000061
GO:GO:0090305 InterPro:IPR025875 Pfam:PF12799 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0004535 KO:K12603 RefSeq:XP_661206.1
ProteinModelPortal:Q5B778 STRING:Q5B778
EnsemblFungi:CADANIAT00005142 GeneID:2873021 KEGG:ani:AN3602.2
HOGENOM:HOG000294222 OMA:CLQEIDQ OrthoDB:EOG4Z39P3 Uniprot:Q5B778
Length = 675
Score = 105 (42.0 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 32/117 (27%), Positives = 52/117 (44%)
Query: 8 YPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDN---EDFYKGNMETEGYSSLYIQR 64
Y ++PS L W+ R + +L L++ D +CLQE+D +F++ + Y ++ R
Sbjct: 327 YGYAPSRVLSWEFRRETILNELRAHDPDIICLQEIDQGSYNEFFREQLAYSDYKGVFWPR 386
Query: 65 S---GQKR------DGCGIFYKISCAELLVEDRIYYNELVNSIKDGSSCGDDQNNTL 112
G + DGC F+K S LL + I + + D DD N L
Sbjct: 387 GRAMGMQEEDAKGVDGCATFFKGSKFILLDKQVINFGQTAVRRPDAKG-QDDIYNRL 442
Score = 83 (34.3 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 138 NDPYVRL-KRDCVGIMAAFRLKGPFDHVVIVATTHLYWDPELADVKLAQAKYLSSRLAEF 196
+D Y RL ++D + ++ + +IV HLYWDP DVKL Q L +
Sbjct: 436 DDIYNRLWQKDHIAVIVFLENRQTGSRFIIV-NAHLYWDPAFKDVKLIQTAILMEEI--- 491
Query: 197 RTQVSDRY 204
T+ S++Y
Sbjct: 492 -TKHSEKY 498
Score = 45 (20.9 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 205 DCVPSVIVAGDFNSVPG 221
D +P + + GDFNS PG
Sbjct: 534 DQIP-LFMCGDFNSSPG 549
>UNIPROTKB|F1SGK9 [details] [associations]
symbol:PDE12 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] Pfam:PF03372
GO:GO:0005739 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 OMA:FRWYKEA EMBL:CU467952 RefSeq:XP_001926497.2
UniGene:Ssc.33948 Ensembl:ENSSSCT00000012546 GeneID:100157651
KEGG:ssc:100157651 Uniprot:F1SGK9
Length = 609
Score = 100 (40.3 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 165 VIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVP 220
+ VA THLYW P+ ++L Q ++ LA R D Y +P V+ GDFNS P
Sbjct: 450 ICVANTHLYWHPKGGYIRLIQ---MAVALAHIRHVSCDLYPGIP-VVFCGDFNSTP 501
Score = 97 (39.2 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 27/97 (27%), Positives = 46/97 (47%)
Query: 2 YVRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNEDFYKGNMET-EGYSSL 60
+ R+ LYP+ L+ R + + L + AD +CLQE+D + F + E +
Sbjct: 312 FSRTVLYPYCAPYALELDYRQNLIQKELTGYNADLICLQEVDRDVFTDSLVPALEAFGLE 371
Query: 61 YIQRSGQKRDGCGIFYKISCAELLVEDRIYYNELVNS 97
+ R Q +G FY+ S LL + I ++E + S
Sbjct: 372 GVFRIKQ-HEGLATFYRKSKFSLLSQHDIAFHEALQS 407
>UNIPROTKB|Q08DF7 [details] [associations]
symbol:PDE12 "2',5'-phosphodiesterase 12" species:9913 "Bos
taurus" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] Pfam:PF03372 GO:GO:0005739
GO:GO:0016787 eggNOG:COG5239 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 EMBL:BC123772 IPI:IPI00717658
RefSeq:NP_001069601.1 UniGene:Bt.42120 ProteinModelPortal:Q08DF7
Ensembl:ENSBTAT00000020675 GeneID:538860 KEGG:bta:538860 CTD:201626
HOGENOM:HOG000006935 HOVERGEN:HBG061027 InParanoid:Q08DF7
OMA:FRWYKEA OrthoDB:EOG4JDH6H NextBio:20877627 Uniprot:Q08DF7
Length = 609
Score = 101 (40.6 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 24/56 (42%), Positives = 31/56 (55%)
Query: 165 VIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVP 220
+ VA THLYW P+ ++L Q ++ LA R D Y +P VI GDFNS P
Sbjct: 450 ICVANTHLYWHPKGGYIRLIQ---MAVALAHIRHVSCDLYPGIP-VIFCGDFNSTP 501
Score = 95 (38.5 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 28/97 (28%), Positives = 45/97 (46%)
Query: 2 YVRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNEDFYKGNMET-EGYSSL 60
+ R+ LYP+ L+ R + + L + AD +CLQE+D F M E +
Sbjct: 312 FSRTVLYPYCAPYALELDYRQNLIQKELTGYNADLICLQEVDRCVFTDSLMPALEAFGLE 371
Query: 61 YIQRSGQKRDGCGIFYKISCAELLVEDRIYYNELVNS 97
+ R Q +G FY+ S LL + I ++E + S
Sbjct: 372 GVFRIKQ-HEGLATFYRKSKFSLLSQHDIAFHEALQS 407
>CGD|CAL0002486 [details] [associations]
symbol:CCR4 species:5476 "Candida albicans" [GO:0030015
"CCR4-NOT core complex" evidence=IEA;ISM] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IEA;ISM] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IEA;ISM] [GO:0009272 "fungal-type cell wall biogenesis"
evidence=IMP] [GO:0055091 "phospholipid homeostasis" evidence=IMP]
[GO:0009405 "pathogenesis" evidence=IMP] [GO:0036180 "filamentous
growth of a population of unicellular organisms in response to
biotic stimulus" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0007089 "traversing start control point of mitotic cell cycle"
evidence=IEA] [GO:0048478 "replication fork protection"
evidence=IEA] [GO:0000076 "DNA replication checkpoint"
evidence=IEA] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] Pfam:PF00560 InterPro:IPR001611
PROSITE:PS51450 CGD:CAL0002486 Pfam:PF03372 GO:GO:0005634
GO:GO:0005737 GO:GO:0071216 GO:GO:0036180 GO:GO:0009405
GO:GO:0006355 GO:GO:0046872 eggNOG:COG4886 InterPro:IPR003591
SMART:SM00369 GO:GO:0006351 GO:GO:0003723 GO:GO:0055091
GO:GO:0009267 GO:GO:0009272 GO:GO:0090305 EMBL:AL033501
EMBL:AACQ01000053 EMBL:AACQ01000052 GO:GO:0036170
InterPro:IPR025875 Pfam:PF12799 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0004535 KO:K12603 PIR:T18239 RefSeq:XP_717564.1
RefSeq:XP_717638.1 ProteinModelPortal:Q5A761 STRING:Q5A761
GeneID:3640749 GeneID:3640796 KEGG:cal:CaO19.12567
KEGG:cal:CaO19.5101 Uniprot:Q5A761
Length = 787
Score = 101 (40.6 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 24/105 (22%), Positives = 47/105 (44%)
Query: 2 YVRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDN---EDFYKGNMETEGYS 58
Y +Y +PS L+W R + + + ++ D +C+QE++ ++F+ M GY
Sbjct: 468 YATPKMYKFTPSWALQWDYRKNLLEKEVLNYNTDIVCMQEVETKTFQEFWLPVMTANGYK 527
Query: 59 SLYIQRS---------GQKRDGCGIFYKISCAELLVEDRIYYNEL 94
+ ++ +K DGC F+K L+ + YN +
Sbjct: 528 GYFFSKTRSKTMSETDSKKVDGCATFFKNDKFSLIHKQNFEYNSV 572
Score = 97 (39.2 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 144 LKRDCVGIMAAFRLKGPFDHVVIVATTHLYWDPELADVKLAQAKYLSSRLA----EFRTQ 199
+ +D + +++ + K + + +V THL+WDP DVK Q L L ++R
Sbjct: 590 MNKDNIALISYLQHKESGEKIAVV-NTHLHWDPAFNDVKALQVGILLEELQGIIKKYRHT 648
Query: 200 VSDRYDCVPSVIVAGDFNSV 219
S+ S++V GDFNSV
Sbjct: 649 NSNEDIKNSSIVVCGDFNSV 668
>UNIPROTKB|Q5A761 [details] [associations]
symbol:CCR4 "Glucose-repressible alcohol dehydrogenase
transcriptional effector" species:237561 "Candida albicans SC5314"
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0009272 "fungal-type cell wall biogenesis" evidence=IMP]
[GO:0009405 "pathogenesis" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0055091 "phospholipid homeostasis" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP] Pfam:PF00560
InterPro:IPR001611 PROSITE:PS51450 CGD:CAL0002486 Pfam:PF03372
GO:GO:0005634 GO:GO:0005737 GO:GO:0071216 GO:GO:0036180
GO:GO:0009405 GO:GO:0006355 GO:GO:0046872 eggNOG:COG4886
InterPro:IPR003591 SMART:SM00369 GO:GO:0006351 GO:GO:0003723
GO:GO:0055091 GO:GO:0009267 GO:GO:0009272 GO:GO:0090305
EMBL:AL033501 EMBL:AACQ01000053 EMBL:AACQ01000052 GO:GO:0036170
InterPro:IPR025875 Pfam:PF12799 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0004535 KO:K12603 PIR:T18239 RefSeq:XP_717564.1
RefSeq:XP_717638.1 ProteinModelPortal:Q5A761 STRING:Q5A761
GeneID:3640749 GeneID:3640796 KEGG:cal:CaO19.12567
KEGG:cal:CaO19.5101 Uniprot:Q5A761
Length = 787
Score = 101 (40.6 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 24/105 (22%), Positives = 47/105 (44%)
Query: 2 YVRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDN---EDFYKGNMETEGYS 58
Y +Y +PS L+W R + + + ++ D +C+QE++ ++F+ M GY
Sbjct: 468 YATPKMYKFTPSWALQWDYRKNLLEKEVLNYNTDIVCMQEVETKTFQEFWLPVMTANGYK 527
Query: 59 SLYIQRS---------GQKRDGCGIFYKISCAELLVEDRIYYNEL 94
+ ++ +K DGC F+K L+ + YN +
Sbjct: 528 GYFFSKTRSKTMSETDSKKVDGCATFFKNDKFSLIHKQNFEYNSV 572
Score = 97 (39.2 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 144 LKRDCVGIMAAFRLKGPFDHVVIVATTHLYWDPELADVKLAQAKYLSSRLA----EFRTQ 199
+ +D + +++ + K + + +V THL+WDP DVK Q L L ++R
Sbjct: 590 MNKDNIALISYLQHKESGEKIAVV-NTHLHWDPAFNDVKALQVGILLEELQGIIKKYRHT 648
Query: 200 VSDRYDCVPSVIVAGDFNSV 219
S+ S++V GDFNSV
Sbjct: 649 NSNEDIKNSSIVVCGDFNSV 668
>TAIR|locus:504956231 [details] [associations]
symbol:AT1G73875 "AT1G73875" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] Pfam:PF03372 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0046872
GO:GO:0006351 GO:GO:0003723 GO:GO:0090305 eggNOG:COG5239
InterPro:IPR005135 SUPFAM:SSF56219 EMBL:AC016662 GO:GO:0004535
EMBL:BT010832 EMBL:BT011303 EMBL:AK230427 IPI:IPI00529493
IPI:IPI00915125 IPI:IPI00915130 RefSeq:NP_683491.2 UniGene:At.45165
ProteinModelPortal:Q0WKY2 SMR:Q0WKY2 EnsemblPlants:AT1G73875.1
GeneID:843724 KEGG:ath:AT1G73875 TAIR:At1g73875
HOGENOM:HOG000241777 OMA:ICKEISR PhylomeDB:Q0WKY2
ProtClustDB:CLSN2915147 Genevestigator:Q0WKY2 Uniprot:Q0WKY2
Length = 454
Score = 146 (56.5 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 50/209 (23%), Positives = 94/209 (44%)
Query: 7 LYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNEDFYKGNMETEGYSSLYIQRSG 66
LY + P L+W R + + + A LCLQE+D D ++ G+ ++ R+G
Sbjct: 119 LYYNVPRKHLEWSRRKHLICKEISRYNASILCLQEVDRFDDLDVLLKNRGFRGVHKSRTG 178
Query: 67 QKRDGCGIFYKISCAELLVEDRIYYNE--LVNSIKD----GSSCGDDQNNTLAGGNNDSD 120
+ DGC IF+K + ELL I +++ + N++ +C +D + L ++D
Sbjct: 179 EASDGCAIFWKENLFELLDHQHIEFDKFGMRNNVAQLCVLEMNCEEDPKSKLRVRSSDPR 238
Query: 121 -LKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVATTHLYWDPELA 179
L G+ + GD+ VRL + A++L + ++ + L P+ A
Sbjct: 239 RLVVGNIHVLFNPKRGDIKLGQVRLFLE-----KAYKLSQEWGNIPVAIAGDLNSTPQSA 293
Query: 180 DVKLAQAKYLSSRLAEFRTQVSDRYDCVP 208
+ L ++L + R Q+S + + P
Sbjct: 294 IYDFIASADLDTQLHD-RRQISGQTEVEP 321
>UNIPROTKB|E2R412 [details] [associations]
symbol:PDE12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
Pfam:PF03372 GO:GO:0005739 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 CTD:201626 OMA:FRWYKEA
EMBL:AAEX03012165 RefSeq:XP_541830.2 Ensembl:ENSCAFT00000012438
GeneID:484714 KEGG:cfa:484714 Uniprot:E2R412
Length = 616
Score = 99 (39.9 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 24/54 (44%), Positives = 30/54 (55%)
Query: 167 VATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVP 220
VA THLYW P+ ++L Q ++ LA R D Y +P VI GDFNS P
Sbjct: 459 VANTHLYWHPKGGYIRLIQ---MAVALAHIRHVSCDLYPGIP-VIFCGDFNSTP 508
Score = 95 (38.5 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 27/97 (27%), Positives = 45/97 (46%)
Query: 2 YVRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNEDFYKGNMET-EGYSSL 60
+ RS LYP+ L+ R + + L + AD +CLQE+D F + E +
Sbjct: 319 FSRSVLYPYCAPYALELDYRQNLIQKELTGYNADLICLQEVDRNVFTDSLVPALEAFGLE 378
Query: 61 YIQRSGQKRDGCGIFYKISCAELLVEDRIYYNELVNS 97
+ R Q +G FY+ + LL + I ++E + S
Sbjct: 379 GVFRIKQ-HEGLATFYRKTKFSLLSQHDISFHEALES 414
>CGD|CAL0006120 [details] [associations]
symbol:orf19.5527 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=IEA] CGD:CAL0006120
Pfam:PF03372 eggNOG:COG5239 InterPro:IPR005135 SUPFAM:SSF56219
EMBL:AACQ01000034 KO:K14812 RefSeq:XP_719092.1 GeneID:3639207
KEGG:cal:CaO19.5527 Uniprot:Q5AC23
Length = 519
Score = 128 (50.1 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 3 VRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDN---EDFYKGNMETEGYSS 59
+R +YP + LKW RS +L LK + AD +CLQE+D E F+ +E GYS+
Sbjct: 128 IRREIYPTN-GKILKWSVRSQILLDELKHYNADIMCLQEVDKVQYEGFWVSQLEKLGYST 186
Query: 60 LYIQRSGQKRDGCGIFYK 77
+ R+ K GC I ++
Sbjct: 187 RFY-RNNTKNHGCVIVFR 203
Score = 58 (25.5 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
Identities = 20/63 (31%), Positives = 27/63 (42%)
Query: 166 IVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQV------SDRYDCVPSVIVAGDFNSV 219
I+ TTHL+W P + Q L + EF+ + S R+ GDFNS
Sbjct: 266 IIGTTHLFWHPFGTYERARQTYMLLYKFREFQRVLRIIVGNSKRFYS----FFTGDFNSE 321
Query: 220 PGD 222
P D
Sbjct: 322 PFD 324
>RGD|1310975 [details] [associations]
symbol:Pde12 "phosphodiesterase 12" species:10116 "Rattus
norvegicus" [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] Pfam:PF03372
RGD:1310975 GO:GO:0016787 eggNOG:COG5239
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
HOGENOM:HOG000006935 HOVERGEN:HBG061027 EMBL:BC079396
IPI:IPI00464947 UniGene:Rn.225980 ProteinModelPortal:Q6AXQ5
PhosphoSite:Q6AXQ5 Ensembl:ENSRNOT00000017800 UCSC:RGD:1310975
OMA:LICLANT ArrayExpress:Q6AXQ5 Genevestigator:Q6AXQ5
Uniprot:Q6AXQ5
Length = 608
Score = 100 (40.3 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 165 VIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVP 220
+ VA THLYW P+ ++L Q +++ L R D Y +P VI GDFNS P
Sbjct: 449 ICVANTHLYWHPKGGYIRLIQ---MAAALVHIRHVSCDLYPGIP-VIFCGDFNSTP 500
Score = 93 (37.8 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 27/97 (27%), Positives = 44/97 (45%)
Query: 2 YVRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNEDFYKGNMET-EGYSSL 60
+ R+ LYP+ L+ R + + L + AD +CLQE+D F + E +
Sbjct: 311 FSRTVLYPYCAPYALELDYRQNLIQKELTGYNADLICLQEVDRAVFSDSLVPALEAFGLE 370
Query: 61 YIQRSGQKRDGCGIFYKISCAELLVEDRIYYNELVNS 97
+ R Q +G FY+ S LL + I + E + S
Sbjct: 371 GVFRIKQ-HEGLATFYRKSKFRLLSQHDISFQEALKS 406
>ZFIN|ZDB-GENE-071004-97 [details] [associations]
symbol:zgc:171797 "zgc:171797" species:7955 "Danio
rerio" [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001611
PROSITE:PS51450 Pfam:PF03372 ZFIN:ZDB-GENE-071004-97
InterPro:IPR025875 Pfam:PF12799 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 OMA:ENVYANR EMBL:AL935334
IPI:IPI00495563 Ensembl:ENSDART00000030357 Bgee:F1QA17
Uniprot:F1QA17
Length = 558
Score = 145 (56.1 bits), Expect = 9.0e-08, P = 9.0e-08
Identities = 56/234 (23%), Positives = 100/234 (42%)
Query: 2 YVRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNE---DFYKGNMETEGYS 58
Y LY + PS L W R +++ + + AD + LQE++ E +F+ + +GY
Sbjct: 201 YATRQLYGYCPSWALNWSYRKKSIMQEILNCNADIISLQEVETEQYFNFFLLELSKQGYD 260
Query: 59 SLYIQRS-GQKRDGCGIFYKISCAELLVEDRIYYN-ELVNSIKDGSSCGDDQNNTLAGGN 116
+ +S + + CA I+Y E N ++ + + N LA N
Sbjct: 261 GFFSPKSRARTMSESDRKHVDGCA-------IFYKTEKFNVVQKHTV----EFNQLAMAN 309
Query: 117 ND-SDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVATTHLYWD 175
++ S+ KD+ L + LK++ + + + + +++VA H++WD
Sbjct: 310 SEGSEAMLNRVMTKDNIGVAVL----LELKKELIEVSSGKSIHAMEKQLLLVANAHMHWD 365
Query: 176 PELADVKLAQAKYLSSRLAEF---------RTQVSDRYDCVPSVIVAGDFNSVP 220
PE +DVKL Q S + + VS +P V+ A D NS+P
Sbjct: 366 PEYSDVKLVQTMMFLSEVKNIIDKASRSLKHSSVSGETSSIPLVLCA-DLNSLP 418
>UNIPROTKB|Q6L8Q7 [details] [associations]
symbol:PDE12 "2',5'-phosphodiesterase 12" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] Pfam:PF03372
GO:GO:0005739 EMBL:CH471055 GO:GO:0016787 eggNOG:COG5239
InterPro:IPR005135 SUPFAM:SSF56219 CTD:201626 HOGENOM:HOG000006935
HOVERGEN:HBG061027 OMA:FRWYKEA OrthoDB:EOG4JDH6H EMBL:AB115695
EMBL:AK074423 EMBL:AK300374 EMBL:AL831824 IPI:IPI00174390
IPI:IPI00886797 RefSeq:NP_808881.3 UniGene:Hs.572993
ProteinModelPortal:Q6L8Q7 SMR:Q6L8Q7 IntAct:Q6L8Q7 STRING:Q6L8Q7
PhosphoSite:Q6L8Q7 DMDM:172046137 PaxDb:Q6L8Q7 PRIDE:Q6L8Q7
DNASU:201626 Ensembl:ENST00000311180 GeneID:201626 KEGG:hsa:201626
UCSC:uc003diw.4 GeneCards:GC03P057541 H-InvDB:HIX0003393
HGNC:HGNC:25386 HPA:HPA043171 neXtProt:NX_Q6L8Q7
PharmGKB:PA162399016 InParanoid:Q6L8Q7 PhylomeDB:Q6L8Q7
GenomeRNAi:201626 NextBio:90179 ArrayExpress:Q6L8Q7 Bgee:Q6L8Q7
CleanEx:HS_PDE12 Genevestigator:Q6L8Q7 Uniprot:Q6L8Q7
Length = 609
Score = 101 (40.6 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 24/56 (42%), Positives = 31/56 (55%)
Query: 165 VIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVP 220
+ VA THLYW P+ ++L Q ++ LA R D Y +P VI GDFNS P
Sbjct: 450 ICVANTHLYWHPKGGYIRLIQ---MAVALAHIRHVSCDLYPGIP-VIFCGDFNSTP 501
Score = 90 (36.7 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 27/97 (27%), Positives = 44/97 (45%)
Query: 2 YVRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNEDFYKGNMET-EGYSSL 60
+ R+ LYP+ L+ R + + L + AD +CLQE+D F + E +
Sbjct: 312 FSRTVLYPYCAPYALELDYRQNLIQKELTGYNADVICLQEVDRAVFSDSLVPALEAFGLE 371
Query: 61 YIQRSGQKRDGCGIFYKISCAELLVEDRIYYNELVNS 97
+ R Q +G FY+ S LL + I + E + S
Sbjct: 372 GVFRIKQ-HEGLATFYRKSKFSLLSQHDISFYEALES 407
>UNIPROTKB|F1S5Q4 [details] [associations]
symbol:CNOT6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000327 "positive regulation of ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IEA]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 InterPro:IPR003591
SMART:SM00369 InterPro:IPR025875 Pfam:PF12799
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
OMA:ENNANED EMBL:CU929694 Ensembl:ENSSSCT00000015302 Uniprot:F1S5Q4
Length = 566
Score = 144 (55.7 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 57/232 (24%), Positives = 97/232 (41%)
Query: 2 YVRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNEDFYKG---NMETEGYS 58
Y LY + PS L W R A++ + S AD + LQE++ E +Y ++ GYS
Sbjct: 210 YATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKDRGYS 269
Query: 59 SLYIQRSGQKRDGCGIFYKIS-CAELLVEDRIYYNELVNSIKDGSSCGDDQNNTLAGGNN 117
+ +S + + CA ++ LV + N LA N+
Sbjct: 270 GFFSPKSRARTMSEQERKHVDGCAIFFKTEKF---TLVQK-------HTVEFNQLAMANS 319
Query: 118 D-SDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVATTHLYWDP 176
+ S+ KD+ L + L+++ + I + G +++VA H++WDP
Sbjct: 320 EGSEAMLNRVMTKDNIGVAVL----LELRKELIEISSGKPHLGTEKQLILVANAHMHWDP 375
Query: 177 ELADVKLAQAKYLSSRLAEF--------RTQVSDRYDCVPSVIVAGDFNSVP 220
E +DVKL Q S + ++ V + +P V+ A D NS+P
Sbjct: 376 EYSDVKLVQTMMFLSEVKNIIDKASRSLQSSVLGEFGTIPLVLCA-DLNSLP 426
>MGI|MGI:2443226 [details] [associations]
symbol:Pde12 "phosphodiesterase 12" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0008150 "biological_process"
evidence=ND] [GO:0016787 "hydrolase activity" evidence=IEA]
Pfam:PF03372 MGI:MGI:2443226 GO:GO:0005739 GO:GO:0016787
eggNOG:COG5239 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 UniGene:Mm.297768 CTD:201626 HOGENOM:HOG000006935
HOVERGEN:HBG061027 OMA:FRWYKEA OrthoDB:EOG4JDH6H EMBL:AK051991
EMBL:AK082947 EMBL:AK088843 EMBL:AK155088 EMBL:AK161083
EMBL:AK167708 EMBL:BC064450 IPI:IPI00420284 RefSeq:NP_848783.3
UniGene:Mm.290758 ProteinModelPortal:Q3TIU4 SMR:Q3TIU4
STRING:Q3TIU4 PhosphoSite:Q3TIU4 PaxDb:Q3TIU4 PRIDE:Q3TIU4
Ensembl:ENSMUST00000052932 GeneID:211948 KEGG:mmu:211948
UCSC:uc007stb.1 InParanoid:Q3TIU4 ChiTaRS:PDE12 NextBio:373405
Bgee:Q3TIU4 Genevestigator:Q3TIU4 Uniprot:Q3TIU4
Length = 608
Score = 96 (38.9 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 23/56 (41%), Positives = 29/56 (51%)
Query: 165 VIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVP 220
+ VA THLYW P+ ++L Q + L R D Y +P VI GDFNS P
Sbjct: 449 ICVANTHLYWHPKGGYIRLIQ---MEVALVHIRHVSRDLYPGIP-VIFCGDFNSTP 500
Score = 93 (37.8 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 27/97 (27%), Positives = 44/97 (45%)
Query: 2 YVRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNEDFYKGNMET-EGYSSL 60
+ R+ LYP+ L+ R + + L + AD +CLQE+D F + E +
Sbjct: 311 FSRTVLYPYCAPYALELDYRQNLIQKELTGYNADLICLQEVDRAVFSDSLVPALEAFGLE 370
Query: 61 YIQRSGQKRDGCGIFYKISCAELLVEDRIYYNELVNS 97
+ R Q +G FY+ S LL + I + E + S
Sbjct: 371 GVFRIKQ-HEGLATFYRKSKFRLLSQHDISFQEALKS 406
>TAIR|locus:2076426 [details] [associations]
symbol:AT3G58560 "AT3G58560" species:3702 "Arabidopsis
thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] Pfam:PF03372 GO:GO:0005829
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
eggNOG:COG5239 InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0004535
EMBL:AL137082 EMBL:AF462845 EMBL:AY133538 IPI:IPI00546024
PIR:T45676 RefSeq:NP_191415.2 UniGene:At.23801 UniGene:At.67574
ProteinModelPortal:Q8W0Z9 SMR:Q8W0Z9 IntAct:Q8W0Z9 PaxDb:Q8W0Z9
PRIDE:Q8W0Z9 EnsemblPlants:AT3G58560.1 GeneID:825025
KEGG:ath:AT3G58560 TAIR:At3g58560 HOGENOM:HOG000239764
InParanoid:Q8W0Z9 KO:K12603 OMA:YATSDTY PhylomeDB:Q8W0Z9
ProtClustDB:PLN03144 Genevestigator:Q8W0Z9 Uniprot:Q8W0Z9
Length = 602
Score = 114 (45.2 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 28/121 (23%), Positives = 55/121 (45%)
Query: 2 YVRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDN---EDFYKGNMETEGYS 58
Y S +Y + P+ L W R +L + + AD +CLQE+ N E+F+ ++ GY
Sbjct: 260 YASSDIYSYCPTWALAWTYRRQNLLREIVKYRADIVCLQEVQNDHFEEFFLPELDKHGYQ 319
Query: 59 SLYIQRSGQ-------KRDGCGIFYKISCAELLVEDRIYYNELVNSIKDGSSCGDDQNNT 111
L+ +++ + DGC F++ + + + +N+ S+ + + N
Sbjct: 320 GLFKRKTNEVFIGNTNTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTEAIIPVSQKKNA 379
Query: 112 L 112
L
Sbjct: 380 L 380
Score = 71 (30.1 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 21/57 (36%), Positives = 29/57 (50%)
Query: 164 VVIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVP 220
++ VA TH+ EL DVKL Q L L + +P ++V GDFN+VP
Sbjct: 411 LLCVANTHVNVPHELKDVKLWQVHTLLKGLEKIAASAD-----IP-MLVCGDFNTVP 461
>UNIPROTKB|A6QR51 [details] [associations]
symbol:CNOT6 "CNOT6 protein" species:9913 "Bos taurus"
[GO:2000327 "positive regulation of ligand-dependent nuclear
receptor transcription coactivator activity" evidence=IEA]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 eggNOG:COG4886
InterPro:IPR003591 SMART:SM00369 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 KO:K12603 OMA:YATSDTY
HOGENOM:HOG000294222 HOVERGEN:HBG052641 OrthoDB:EOG43TZV7 CTD:57472
EMBL:DAAA02018941 EMBL:DAAA02018942 EMBL:DAAA02018943 EMBL:BC150116
IPI:IPI00711873 RefSeq:NP_001094631.1 UniGene:Bt.37548
STRING:A6QR51 Ensembl:ENSBTAT00000023088 GeneID:534707
KEGG:bta:534707 InParanoid:A6QR51 NextBio:20876510 Uniprot:A6QR51
Length = 557
Score = 141 (54.7 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 56/232 (24%), Positives = 97/232 (41%)
Query: 2 YVRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNEDFYKG---NMETEGYS 58
Y LY + PS L W R A++ + S AD + LQE++ E +Y ++ GY+
Sbjct: 201 YATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYN 260
Query: 59 SLYIQRSGQKRDGCGIFYKIS-CAELLVEDRIYYNELVNSIKDGSSCGDDQNNTLAGGNN 117
+ +S + + CA ++ LV + N LA N+
Sbjct: 261 GFFSPKSRARTMSEQERKHVDGCAIFFKTEKF---TLVQK-------HTVEFNQLAMANS 310
Query: 118 D-SDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVATTHLYWDP 176
+ S+ KD+ L + L+++ + I + G +++VA H++WDP
Sbjct: 311 EGSEAMLNRVMTKDNIGVAVL----LELRKELIEISSGKPHLGTEKQLILVANAHMHWDP 366
Query: 177 ELADVKLAQAKYLSSRLAEF--------RTQVSDRYDCVPSVIVAGDFNSVP 220
E +DVKL Q S + ++ V + +P V+ A D NS+P
Sbjct: 367 EYSDVKLVQTMMFLSEVKNIIDKASRSLQSSVLGEFGTIPLVLCA-DLNSLP 417
>SGD|S000004898 [details] [associations]
symbol:NGL2 "Protein involved in 5.8S rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0090305 "nucleic
acid phosphodiester bond hydrolysis" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=ISS;IMP] [GO:0005622
"intracellular" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=IMP] SGD:S000004898 Pfam:PF03372 GO:GO:0005634
GO:GO:0005737 GO:GO:0003723 GO:GO:0005622 EMBL:BK006946
GO:GO:0004527 EMBL:Z49704 GO:GO:0004521 eggNOG:COG5239
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0006364 PIR:S54592
RefSeq:NP_014012.1 ProteinModelPortal:Q03264 DIP:DIP-894N
IntAct:Q03264 STRING:Q03264 PaxDb:Q03264 PeptideAtlas:Q03264
EnsemblFungi:YMR285C GeneID:855329 KEGG:sce:YMR285C CYGD:YMR285c
GeneTree:ENSGT00550000076051 HOGENOM:HOG000248147 KO:K14812
OMA:MRAISLY OrthoDB:EOG4K3Q4X NextBio:979049 Genevestigator:Q03264
GermOnline:YMR285C Uniprot:Q03264
Length = 515
Score = 118 (46.6 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 27/78 (34%), Positives = 40/78 (51%)
Query: 3 VRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDN---EDFYKGNMETEGYSS 59
+R L+P S A LKW RS +L K + +D +CLQE+D+ + F+K GY
Sbjct: 125 IRRKLFPDSGDA-LKWYRRSKVLLNEFKYYNSDVICLQEIDHIQFQSFWKDEFSKLGYDG 183
Query: 60 LYIQRSGQKRDGCGIFYK 77
Y R+ K G I ++
Sbjct: 184 QYY-RNATKNHGVAIMWR 200
Score = 63 (27.2 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 165 VIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVS---DRYDCVPS---VIVAGDFNS 218
+++ TTHL+W P + Q + ++ EF +V+ + D S GDFNS
Sbjct: 257 ILIGTTHLFWHPFGTYERTRQCYIVLKKMKEFMHRVNVLQNENDGDLSHWFPFFCGDFNS 316
Query: 219 VPGD 222
P D
Sbjct: 317 QPFD 320
>TAIR|locus:2076446 [details] [associations]
symbol:AT3G58580 "AT3G58580" species:3702 "Arabidopsis
thaliana" [GO:0016787 "hydrolase activity" evidence=ISS]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] Pfam:PF03372 GO:GO:0005634 GO:GO:0005737
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0046872
GO:GO:0006351 GO:GO:0003723 GO:GO:0090305 eggNOG:COG5239
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0004535 EMBL:AL137082
HOGENOM:HOG000239764 KO:K12603 ProtClustDB:PLN03144 EMBL:AK226830
IPI:IPI00519312 PIR:T45678 RefSeq:NP_191417.2 UniGene:At.34714
ProteinModelPortal:Q9M2F8 SMR:Q9M2F8 PaxDb:Q9M2F8 PRIDE:Q9M2F8
EnsemblPlants:AT3G58580.1 GeneID:825027 KEGG:ath:AT3G58580
TAIR:At3g58580 InParanoid:Q9M2F8 OMA:ENNANED PhylomeDB:Q9M2F8
Genevestigator:Q9M2F8 Uniprot:Q9M2F8
Length = 603
Score = 107 (42.7 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 28/106 (26%), Positives = 51/106 (48%)
Query: 5 SALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNEDFYK---GNMETEGYSSLY 61
S LY + P L W R +L + + AD +CLQE+ ++ F++ ++ GY +LY
Sbjct: 266 SDLYSYCPPWALSWPYRRQNLLREIVGYRADVVCLQEVQSDHFHEIFAPELDKHGYQALY 325
Query: 62 IQR-----SGQKR--DGCGIFYKISCAELLVEDRIYYNELVNSIKD 100
++ SG DGC F++ + + + +N+ S+ D
Sbjct: 326 KRKTNEVLSGSTSAIDGCATFFRRDRFSHVKKYDVEFNKAAQSLTD 371
Score = 77 (32.2 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 27/87 (31%), Positives = 41/87 (47%)
Query: 143 RLKRDCVGIMAAFRLK-G--PFD-----HVVIVATTHLYWDPELADVKLAQAKYLSSRLA 194
RL +D + ++ K G P D ++ VA TH+ +L DVKL Q L L
Sbjct: 385 RLVKDNIALIVVLEAKFGNQPTDPSGKRQLICVANTHVNVQQDLKDVKLWQVHTLLKGLE 444
Query: 195 EFRTQVSDRYDCVPSVIVAGDFNSVPG 221
+ +P ++V GDFN++PG
Sbjct: 445 KIAASAD-----IP-MLVCGDFNTLPG 465
>UNIPROTKB|F1RYS2 [details] [associations]
symbol:CNOT6L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0061157 "mRNA destabilization" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] InterPro:IPR001611
PROSITE:PS51450 Pfam:PF03372 GO:GO:0005737 GO:GO:0008284
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0000288 GO:GO:0004535 OMA:YMLDNLA GO:GO:0061157 EMBL:CU914220
Ensembl:ENSSSCT00000009846 Uniprot:F1RYS2
Length = 557
Score = 93 (37.8 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 164 VVIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRY-------DCVPSVIVAGDF 216
++IVA H++WDPE +DVKL Q S + + S R + +P V+ A D
Sbjct: 355 LLIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCA-DL 413
Query: 217 NSVP 220
NS+P
Sbjct: 414 NSLP 417
Score = 92 (37.4 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 32/116 (27%), Positives = 53/116 (45%)
Query: 2 YVRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNE---------DFYKGNM 52
Y LY + PS L W+ R ++ + + AD + LQ+ E F K +
Sbjct: 201 YATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQQNPKELFSLLSLFFFFLKDKL 260
Query: 53 ETEGY---SSLYIQRSGQKR---DGCGIFYKISCAELLVEDRIYYNELVNSIKDGS 102
+ +G+ SS S Q+R DGC IF+K L+ + + +N++ + DGS
Sbjct: 261 K-DGFFLQSSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMANSDGS 315
>UNIPROTKB|E2QS92 [details] [associations]
symbol:CNOT6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000327 "positive regulation of
ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] InterPro:IPR001611 PROSITE:PS51450
Pfam:PF03372 InterPro:IPR003591 SMART:SM00369
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
EMBL:AAEX03007668 RefSeq:XP_538584.2 Ensembl:ENSCAFT00000000745
GeneID:481463 Uniprot:E2QS92
Length = 557
Score = 138 (53.6 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 55/232 (23%), Positives = 97/232 (41%)
Query: 2 YVRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNEDFYKG---NMETEGYS 58
Y LY + PS L W R A++ + S AD + LQE++ E +Y ++ GY+
Sbjct: 201 YATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYN 260
Query: 59 SLYIQRSGQKRDGCGIFYKIS-CAELLVEDRIYYNELVNSIKDGSSCGDDQNNTLAGGNN 117
+ +S + + CA ++ LV + N LA N+
Sbjct: 261 GFFSPKSRARTMSEQERKHVDGCAIFFKTEKF---TLVQK-------HTVEFNQLAMANS 310
Query: 118 D-SDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVATTHLYWDP 176
+ S+ KD+ L + L+++ + + + G +++VA H++WDP
Sbjct: 311 EGSEAMLNRVMTKDNIGVAVL----LELRKELIEMSSGKPHLGTEKQLILVANAHMHWDP 366
Query: 177 ELADVKLAQAKYLSSRLAEF--------RTQVSDRYDCVPSVIVAGDFNSVP 220
E +DVKL Q S + ++ V + +P V+ A D NS+P
Sbjct: 367 EYSDVKLVQTMMFLSEVKNIIDKASRNLQSSVLGEFGTIPLVLCA-DLNSLP 417
>UNIPROTKB|Q5BJ41 [details] [associations]
symbol:cnot6 "CCR4-NOT transcription complex subunit 6"
species:8355 "Xenopus laevis" [GO:2000327 "positive regulation of
ligand-dependent nuclear receptor transcription coactivator
activity" evidence=ISS] InterPro:IPR001611 PROSITE:PS51450
Pfam:PF03372 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 InterPro:IPR003591 SMART:SM00369 GO:GO:0006351
GO:GO:0003723 GO:GO:0004527 GO:GO:0090305 InterPro:IPR005135
SUPFAM:SSF56219 KO:K12603 HOVERGEN:HBG052641 CTD:57472
GO:GO:2000327 EMBL:BC091632 RefSeq:NP_001184194.1 UniGene:Xl.52932
ProteinModelPortal:Q5BJ41 GeneID:100505426 KEGG:xla:100505426
Uniprot:Q5BJ41
Length = 552
Score = 135 (52.6 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 56/232 (24%), Positives = 97/232 (41%)
Query: 2 YVRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNEDFYKG---NMETEGYS 58
Y LY + PS L W R A++ + S AD + LQE++ E +Y ++ GY+
Sbjct: 196 YATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYN 255
Query: 59 SLYIQRSGQKRDGCGIFYKIS-CAELLVEDRIYYNELVNSIKDGSSCGDDQNNTLAGGNN 117
+ +S + + CA ++ LV + N LA N+
Sbjct: 256 GFFSPKSRARTMSEQERKHVDGCAIFFKTEKF---TLVQK-------HTVEFNQLAMANS 305
Query: 118 D-SDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVATTHLYWDP 176
+ S+ KD+ L + L+++ + + + G +++VA H++WDP
Sbjct: 306 EGSEAMLNRVMTKDNIGVAVL----LELRKELIEMSSGKPHLGTEKQLILVANAHMHWDP 361
Query: 177 ELADVKLAQAKYLSSRLAEFRTQVSDRY------DC--VPSVIVAGDFNSVP 220
E +DVKL Q S + + S +C +P V+ A D NS+P
Sbjct: 362 EYSDVKLVQTMMFLSEVKNIIDKASRSLKSSVLGECGTIPLVLCA-DLNSLP 412
>MGI|MGI:2144529 [details] [associations]
symbol:Cnot6 "CCR4-NOT transcription complex, subunit 6"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030014 "CCR4-NOT complex"
evidence=ISO] [GO:0043928 "exonucleolytic nuclear-transcribed mRNA
catabolic process involved in deadenylation-dependent decay"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:2000327 "positive regulation of ligand-dependent nuclear
receptor transcription coactivator activity" evidence=ISO]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 MGI:MGI:2144529
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0046872
eggNOG:COG4886 InterPro:IPR003591 SMART:SM00369 GO:GO:0006351
GO:GO:0003723 GO:GO:0004527 GO:GO:0090305
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
KO:K12603 OMA:YATSDTY HOGENOM:HOG000294222 CleanEx:MM_CCR4
HOVERGEN:HBG052641 OrthoDB:EOG43TZV7 CTD:57472 GO:GO:2000327
EMBL:AY043269 EMBL:AK129307 EMBL:AL606479 EMBL:BC049984
EMBL:BC057190 EMBL:BC062950 IPI:IPI00322541 IPI:IPI00410965
IPI:IPI00410966 RefSeq:NP_997649.1 UniGene:Mm.247113
UniGene:Mm.431753 ProteinModelPortal:Q8K3P5 SMR:Q8K3P5
STRING:Q8K3P5 PhosphoSite:Q8K3P5 PRIDE:Q8K3P5 DNASU:104625
Ensembl:ENSMUST00000020624 Ensembl:ENSMUST00000145353 GeneID:104625
KEGG:mmu:104625 UCSC:uc007iqy.1 UCSC:uc007iqz.1 UCSC:uc007ira.1
InParanoid:Q8K3P5 NextBio:357192 Bgee:Q8K3P5 CleanEx:MM_CNOT6
Genevestigator:Q8K3P5 GermOnline:ENSMUSG00000020362 Uniprot:Q8K3P5
Length = 557
Score = 135 (52.6 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 56/232 (24%), Positives = 97/232 (41%)
Query: 2 YVRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNEDFYKG---NMETEGYS 58
Y LY + PS L W R A++ + S AD + LQE++ E +Y ++ GY+
Sbjct: 201 YATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYN 260
Query: 59 SLYIQRSGQKRDGCGIFYKIS-CAELLVEDRIYYNELVNSIKDGSSCGDDQNNTLAGGNN 117
+ +S + + CA ++ LV + N LA N+
Sbjct: 261 GFFSPKSRARTMSEQERKHVDGCAIFFKTEKF---TLVQK-------HTVEFNQLAMANS 310
Query: 118 D-SDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVATTHLYWDP 176
+ S+ KD+ L + L+++ + + + G +++VA H++WDP
Sbjct: 311 EGSEAMLNRVMTKDNIGVAVL----LELRKELIEMSSGKPHLGTEKQLILVANAHMHWDP 366
Query: 177 ELADVKLAQAKYLSSRLAEFRTQVSDRY------DC--VPSVIVAGDFNSVP 220
E +DVKL Q S + + S +C +P V+ A D NS+P
Sbjct: 367 EYSDVKLVQTMMFLSEVKNIIDKASRSLKSSVLGECGTIPLVLCA-DLNSLP 417
>RGD|1310783 [details] [associations]
symbol:Cnot6 "CCR4-NOT transcription complex, subunit 6"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0030014 "CCR4-NOT complex"
evidence=ISO] [GO:0043928 "exonucleolytic nuclear-transcribed mRNA
catabolic process involved in deadenylation-dependent decay"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:2000327 "positive regulation of ligand-dependent nuclear
receptor transcription coactivator activity" evidence=ISO;ISS]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 RGD:1310783
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0046872
eggNOG:COG4886 InterPro:IPR003591 SMART:SM00369 GO:GO:0006351
GO:GO:0003723 GO:GO:0004527 GO:GO:0090305 InterPro:IPR005135
SUPFAM:SSF56219 KO:K12603 HOGENOM:HOG000294222 HOVERGEN:HBG052641
OrthoDB:EOG43TZV7 CTD:57472 GO:GO:2000327 EMBL:BC079308
IPI:IPI00464576 RefSeq:NP_001013878.1 UniGene:Rn.93562
ProteinModelPortal:Q6AXU9 SMR:Q6AXU9 STRING:Q6AXU9
PhosphoSite:Q6AXU9 PRIDE:Q6AXU9 GeneID:287249 KEGG:rno:287249
UCSC:RGD:1310783 NextBio:625750 ArrayExpress:Q6AXU9
Genevestigator:Q6AXU9 GermOnline:ENSRNOG00000002803 Uniprot:Q6AXU9
Length = 557
Score = 135 (52.6 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 56/232 (24%), Positives = 97/232 (41%)
Query: 2 YVRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNEDFYKG---NMETEGYS 58
Y LY + PS L W R A++ + S AD + LQE++ E +Y ++ GY+
Sbjct: 201 YATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYN 260
Query: 59 SLYIQRSGQKRDGCGIFYKIS-CAELLVEDRIYYNELVNSIKDGSSCGDDQNNTLAGGNN 117
+ +S + + CA ++ LV + N LA N+
Sbjct: 261 GFFSPKSRARTMSEQERKHVDGCAIFFKTEKF---TLVQK-------HTVEFNQLAMANS 310
Query: 118 D-SDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVATTHLYWDP 176
+ S+ KD+ L + L+++ + + + G +++VA H++WDP
Sbjct: 311 EGSEAMLNRVMTKDNIGVAVL----LELRKELIEMSSGKPHLGTEKQLILVANAHMHWDP 366
Query: 177 ELADVKLAQAKYLSSRLAEFRTQVSDRY------DC--VPSVIVAGDFNSVP 220
E +DVKL Q S + + S +C +P V+ A D NS+P
Sbjct: 367 EYSDVKLVQTMMFLSEVKNIIDKASRSLKSSVLGECGTIPLVLCA-DLNSLP 417
>ZFIN|ZDB-GENE-050522-302 [details] [associations]
symbol:cnot6l "CCR4-NOT transcription complex,
subunit 6-like" species:7955 "Danio rerio" [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372
ZFIN:ZDB-GENE-050522-302 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
eggNOG:COG4886 GO:GO:0004527 GO:GO:0090305 InterPro:IPR025875
Pfam:PF12799 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 KO:K12603 HOGENOM:HOG000294222 EMBL:BX640512
EMBL:BC095634 IPI:IPI00487742 RefSeq:NP_001018474.1
UniGene:Dr.76067 ProteinModelPortal:A2BHJ4 STRING:A2BHJ4
Ensembl:ENSDART00000076807 GeneID:553665 KEGG:dre:553665 CTD:246175
HOVERGEN:HBG052641 OMA:YMLDNLA OrthoDB:EOG43TZV7 NextBio:20880398
Bgee:A2BHJ4 Uniprot:A2BHJ4
Length = 559
Score = 133 (51.9 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 32/113 (28%), Positives = 56/113 (49%)
Query: 2 YVRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNEDFYKGNMET---EGYS 58
Y LY + PS L W+ R ++ + + AD + LQE++ E +Y +ET GY
Sbjct: 196 YATRQLYGYCPSWALNWEYRKKGIMEEITNCDADIISLQEVETEQYYTFFLETLKDRGYD 255
Query: 59 SLYIQRSG------QKR---DGCGIFYKISCAELLVEDRIYYNELVNSIKDGS 102
+ +S Q+R DGCG+F+K L+ + + +N++ + +GS
Sbjct: 256 GFFCPKSRAKLVSEQERKHVDGCGVFFKTEKFALVQKHTVEFNQVAMANSEGS 308
>UNIPROTKB|F1NGS9 [details] [associations]
symbol:PDE12 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005739 "mitochondrion" evidence=IEA] Pfam:PF03372
GO:GO:0005739 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 OMA:FRWYKEA EMBL:AADN02014019 IPI:IPI00572753
Ensembl:ENSGALT00000009018 Uniprot:F1NGS9
Length = 569
Score = 90 (36.7 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 30/97 (30%), Positives = 47/97 (48%)
Query: 134 HGDLND-----PYVR---LKRDCVGIMAAFRLKGPFDHVVIVATTHLYWDPEL--ADVKL 183
H +L D P VR L+R V ++ + + + VA THLYW P+ +++L
Sbjct: 369 HAELRDRLGRYPAVRDKVLQRSSVLQVSVLQSETDPSKKLCVANTHLYWHPKALGGNIRL 428
Query: 184 AQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVP 220
Q ++ L+ + D Y +P +I GDFNS P
Sbjct: 429 IQ---IAVALSHIKYVACDLYPNIP-LIFCGDFNSTP 461
Score = 86 (35.3 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 26/99 (26%), Positives = 44/99 (44%)
Query: 2 YVRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNEDFYKG---NMETEGYS 58
+ R+ LYP+ L+ R + + L + AD +CLQE+D F ++ G
Sbjct: 268 FSRTVLYPYCAPYALEVDYRQNLLKKELAGYNADLICLQEVDKSVFADSLAPALDAFGLE 327
Query: 59 SLYIQRSGQKRDGCGIFYKISCAELLVEDRIYYNELVNS 97
L+ + Q +G FY+ LL I ++E + S
Sbjct: 328 GLFKIKEKQ-HEGLATFYRRDKFSLLSRHDITFSEALLS 365
>SGD|S000004587 [details] [associations]
symbol:NGL3 "3'-5' exonuclease specific for poly-A RNAs"
species:4932 "Saccharomyces cerevisiae" [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0004535 "poly(A)-specific ribonuclease
activity" evidence=IDA] [GO:0090305 "nucleic acid phosphodiester
bond hydrolysis" evidence=IEA] [GO:0043633
"polyadenylation-dependent RNA catabolic process" evidence=IDA]
[GO:0004519 "endonuclease activity" evidence=ISS] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0004518 "nuclease activity" evidence=IEA]
SGD:S000004587 Pfam:PF03372 EMBL:BK006946 GO:GO:0004519
eggNOG:COG5239 InterPro:IPR005135 SUPFAM:SSF56219 EMBL:Z49210
GO:GO:0004535 EMBL:Z49218 GeneTree:ENSGT00550000076051
HOGENOM:HOG000248147 OrthoDB:EOG4K3Q4X PIR:S54066
RefSeq:NP_013588.1 ProteinModelPortal:Q03210 IntAct:Q03210
MINT:MINT-4084056 STRING:Q03210 PRIDE:Q03210 EnsemblFungi:YML118W
GeneID:854921 KEGG:sce:YML118W CYGD:YML118w OMA:FETANNI
NextBio:977935 Genevestigator:Q03210 GermOnline:YML118W
GO:GO:0043633 Uniprot:Q03210
Length = 505
Score = 91 (37.1 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 3 VRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELD-NE-DFYKGNMETEGYSSL 60
+R +P S A LKW RS ++ LK + D + LQE+D NE +F++ N G+ +
Sbjct: 122 IRRDFFPESGPA-LKWHKRSKVLVHELKKYRPDVVSLQEVDYNELNFWQENFHKLGFDVI 180
Query: 61 YIQRSGQ 67
+ + G+
Sbjct: 181 FKRHEGK 187
Score = 78 (32.5 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 29/113 (25%), Positives = 50/113 (44%)
Query: 112 LAGGNNDSDLKSGSWSKK-DSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHV---VIV 167
L NN W D+ G++ R K + ++ + KG D +IV
Sbjct: 192 LVAWNNKKFQLDNDWMLDYDNILAGNVISARTRTKN--IALIISLYFKGITDSSSRGIIV 249
Query: 168 ATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVP 220
A THL+W P +L Q+ + ++ E + +Y+ S+++ GDFN+ P
Sbjct: 250 ANTHLFWHPFGVFERLRQSYLVLQKIQEIKA--CSKYNGWHSLLM-GDFNTEP 299
>ZFIN|ZDB-GENE-060519-25 [details] [associations]
symbol:pde12 "phosphodiesterase 12" species:7955
"Danio rerio" [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] Pfam:PF03372
ZFIN:ZDB-GENE-060519-25 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 EMBL:FP067440 EMBL:CU638695
IPI:IPI00882873 Ensembl:ENSDART00000067608 ArrayExpress:F1RBC5
Bgee:F1RBC5 Uniprot:F1RBC5
Length = 591
Score = 90 (36.7 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 164 VVIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVP 220
++ V THLYW PE +V+L Q ++ L + V++++ +I +GDFNS P
Sbjct: 427 ILCVGNTHLYWRPEGGNVRLVQ---IAVALEHMKQVVTEKHPGA-RLIFSGDFNSTP 479
Score = 73 (30.8 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 20/97 (20%), Positives = 45/97 (46%)
Query: 4 RSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDN---EDFYKGNMETEGYSSL 60
++ LYP+ L+ R + + L + AD +CLQE+D D ++ G +
Sbjct: 290 KTVLYPYCAPYALQMDYRQNLIKKELSGYNADIICLQEVDKCVFVDVLCPALDAFGLDGV 349
Query: 61 YIQRSGQKRDGCGIFYKISCAELLVEDRIYYNELVNS 97
+ + Q +G +++ S +L+ + + +E + +
Sbjct: 350 FRIKEKQ-HEGLATYFRRSKLKLVEQYDVMLSEALTT 385
>SGD|S000005402 [details] [associations]
symbol:NGL1 "Putative endonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=ISS]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] SGD:S000005402 Pfam:PF03372 GO:GO:0005739
EMBL:BK006948 GO:GO:0004527 GO:GO:0004519 eggNOG:COG5239
InterPro:IPR005135 SUPFAM:SSF56219 EMBL:Z74784 EMBL:AY693067
PIR:S66727 RefSeq:NP_014600.1 ProteinModelPortal:Q08213 SMR:Q08213
DIP:DIP-4236N IntAct:Q08213 MINT:MINT-522599 STRING:Q08213
PaxDb:Q08213 EnsemblFungi:YOL042W GeneID:854115 KEGG:sce:YOL042W
CYGD:YOL042w HOGENOM:HOG000000773 OMA:CAIFFRS OrthoDB:EOG42C1JF
NextBio:975810 Genevestigator:Q08213 GermOnline:YOL042W
Uniprot:Q08213
Length = 363
Score = 116 (45.9 bits), Expect = 0.00015, P = 0.00015
Identities = 56/233 (24%), Positives = 95/233 (40%)
Query: 2 YVRSALYPHSPSACLKWKNRSDAV-LTVLKSFGADFLCLQEL---DNEDFYKGNMETE-G 56
Y+ +Y + W R + +L +F AD +CLQE+ D ED++ ++ +
Sbjct: 39 YMWPQVYTYVAEPYKNWSYRHRLLEKELLNTFKADIMCLQEMTARDYEDYWHDSIGVDVN 98
Query: 57 YSSLYIQRSGQK--------RDGCGIFYKISCAELLVEDRIYYNELVNSIKDGSSCGDDQ 108
Y S +I ++ K DG IFY ++ + + IY N+L+N +Q
Sbjct: 99 YGSKFISKTPPKYWKKPVKDMDGVSIFYNLAKFDFISSSGIYLNQLLNVF--------NQ 150
Query: 109 NNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVA 168
N L G+ S D L D + C+ + + G + +V
Sbjct: 151 RELKYLYNKKVTLTDGA-SNVIGED--SLLDVLKGKNQVCLFVSLRHKETGT---IFVVL 204
Query: 169 TTHLYWDPELADVKLAQAKYLSSRLAEFRTQV--SD-RYDCVPSVIVAGDFNS 218
THLYW + +VKL Q + L++ Q+ D + ++ GD NS
Sbjct: 205 NTHLYWKYD--EVKLTQCMIIMRELSKIIKQLLPGDVKGQERVKILFTGDLNS 255
>FB|FBgn0016762 [details] [associations]
symbol:angel "angel" species:7227 "Drosophila melanogaster"
[GO:0005575 "cellular_component" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] Pfam:PF03372 EMBL:AE013599 GO:GO:0007275
eggNOG:COG5239 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 EMBL:X85743 EMBL:AY058301 PIR:S71925
RefSeq:NP_477204.1 UniGene:Dm.4319 ProteinModelPortal:Q24239
DIP:DIP-17505N IntAct:Q24239 MINT:MINT-777493 STRING:Q24239
EnsemblMetazoa:FBtr0072083 GeneID:37748 KEGG:dme:Dmel_CG12273
UCSC:CG12273-RA CTD:37748 FlyBase:FBgn0016762 InParanoid:Q24239
OMA:DVRCAQV OrthoDB:EOG4FQZ73 PhylomeDB:Q24239 GenomeRNAi:37748
NextBio:805224 Bgee:Q24239 GermOnline:CG12273 Uniprot:Q24239
Length = 354
Score = 110 (43.8 bits), Expect = 0.00073, P = 0.00073
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 127 SKKDSRDHG--DLNDPYVRL-KRDCVGIMAAFRLKGPFDHV--VIVATTHLYWDPELADV 181
SK + DH +L D V L RD V + A FR K + +VATTHL ++ + +DV
Sbjct: 164 SKFELLDHQAVELYDQAVALLNRDNVALFARFRFKKQQEQQKEFVVATTHLLFNTKRSDV 223
Query: 182 KLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVP 220
+ AQ + + L F T P +++ GDFNS+P
Sbjct: 224 RCAQVERILEELQSFSTDT-------P-IVLTGDFNSLP 254
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.136 0.414 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 223 223 0.00098 112 3 11 22 0.41 33
32 0.40 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 46
No. of states in DFA: 605 (64 KB)
Total size of DFA: 199 KB (2112 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.55u 0.08s 21.63t Elapsed: 00:00:03
Total cpu time: 21.56u 0.08s 21.64t Elapsed: 00:00:03
Start: Fri May 10 04:26:51 2013 End: Fri May 10 04:26:54 2013