Query 047989
Match_columns 223
No_of_seqs 151 out of 1599
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 05:10:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047989.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047989hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03144 Carbon catabolite rep 100.0 2.1E-37 4.5E-42 283.3 18.3 188 1-223 266-471 (606)
2 KOG2338 Transcriptional effect 100.0 3.5E-31 7.6E-36 232.5 14.0 170 4-223 134-308 (495)
3 COG5239 CCR4 mRNA deadenylase, 99.9 5.7E-25 1.2E-29 186.6 6.2 187 1-222 42-257 (378)
4 KOG0620 Glucose-repressible al 99.9 3.8E-23 8.1E-28 180.2 4.0 186 2-223 32-237 (361)
5 TIGR03395 sphingomy sphingomye 99.8 1.4E-18 3E-23 148.1 13.9 153 14-223 17-193 (283)
6 PRK11756 exonuclease III; Prov 99.7 1.1E-16 2.5E-21 135.2 14.4 141 18-222 11-158 (268)
7 PRK05421 hypothetical protein; 99.7 5.6E-17 1.2E-21 137.0 11.7 135 23-221 60-196 (263)
8 COG3568 ElsH Metal-dependent h 99.7 2.8E-17 6.1E-22 136.4 9.0 142 17-223 25-180 (259)
9 smart00476 DNaseIc deoxyribonu 99.7 1.7E-15 3.7E-20 128.1 13.6 150 14-221 31-190 (276)
10 PF03372 Exo_endo_phos: Endonu 99.6 2.5E-14 5.3E-19 116.5 12.7 147 21-222 17-171 (249)
11 TIGR00195 exoDNase_III exodeox 99.5 1.8E-13 3.9E-18 114.7 14.0 135 20-222 13-153 (254)
12 PTZ00297 pantothenate kinase; 99.5 1.8E-13 3.9E-18 137.1 15.1 149 22-219 30-207 (1452)
13 TIGR00633 xth exodeoxyribonucl 99.5 8E-13 1.7E-17 110.3 13.9 135 21-221 14-155 (255)
14 COG0708 XthA Exonuclease III [ 99.5 1.4E-12 3E-17 108.7 14.1 59 19-78 12-72 (261)
15 KOG2756 Predicted Mg2+-depende 99.4 2.8E-12 6.1E-17 105.8 12.9 139 19-219 116-255 (349)
16 KOG3873 Sphingomyelinase famil 99.4 3E-13 6.4E-18 115.5 6.8 151 18-222 26-185 (422)
17 PRK13911 exodeoxyribonuclease 99.3 4.2E-11 9.1E-16 100.4 15.2 58 20-79 13-72 (250)
18 PRK15251 cytolethal distending 99.2 2.2E-10 4.8E-15 96.1 14.0 48 165-223 152-200 (271)
19 COG3021 Uncharacterized protei 98.8 2.2E-08 4.7E-13 85.1 7.3 134 23-223 104-238 (309)
20 smart00128 IPPc Inositol polyp 98.3 9.1E-06 2E-10 70.3 10.5 68 149-220 127-194 (310)
21 COG2374 Predicted extracellula 98.3 3.9E-06 8.4E-11 78.4 8.5 157 18-221 500-688 (798)
22 COG5239 CCR4 mRNA deadenylase, 97.2 0.00042 9E-09 60.1 4.1 70 147-223 121-191 (378)
23 KOG0566 Inositol-1,4,5-triphos 96.9 0.0038 8.1E-08 60.2 7.7 64 150-219 663-726 (1080)
24 PTZ00312 inositol-1,4,5-tripho 96.2 0.022 4.9E-07 48.5 7.4 61 150-220 70-141 (356)
25 KOG1976 Inositol polyphosphate 95.2 0.031 6.8E-07 47.7 4.7 63 150-222 159-232 (391)
26 PLN03191 Type I inositol-1,4,5 94.2 0.11 2.4E-06 48.5 6.1 56 163-219 420-481 (621)
27 PF14529 Exo_endo_phos_2: Endo 94.0 0.075 1.6E-06 38.4 3.7 11 209-219 32-42 (119)
28 KOG1387 Glycosyltransferase [C 80.7 1.7 3.6E-05 38.4 3.1 48 166-222 45-92 (465)
29 COG5411 Phosphatidylinositol 5 80.6 1.4 3E-05 39.7 2.6 52 165-219 167-218 (460)
30 PTZ00235 DNA polymerase epsilo 65.3 25 0.00055 30.2 6.5 14 207-220 64-77 (291)
31 KOG0565 Inositol polyphosphate 61.6 13 0.00029 28.0 3.9 15 208-222 109-123 (145)
32 KOG0808 Carbon-nitrogen hydrol 58.4 10 0.00022 32.1 2.8 25 20-44 100-124 (387)
33 cd07391 MPP_PF1019 Pyrococcus 51.7 16 0.00034 28.4 3.0 48 166-218 2-53 (172)
34 cd08165 MPP_MPPE1 human MPPE1 51.5 19 0.0004 27.7 3.3 48 166-218 2-50 (156)
35 KOG1294 Apurinic/apyrimidinic 40.5 67 0.0014 28.3 5.3 57 164-221 168-226 (335)
36 COG1407 Predicted ICC-like pho 37.3 42 0.0009 28.0 3.4 51 163-218 21-75 (235)
37 TIGR00024 SbcD_rel_arch putati 35.6 80 0.0017 25.9 4.8 51 163-218 16-70 (225)
38 KOG3076 5'-phosphoribosylglyci 35.5 36 0.00078 27.4 2.6 20 23-42 77-96 (206)
39 cd07390 MPP_AQ1575 Aquifex aeo 32.4 42 0.0009 25.9 2.6 12 207-218 43-54 (168)
40 COG2144 Selenophosphate synthe 25.8 3.6E+02 0.0078 23.5 7.1 34 159-199 89-122 (324)
41 smart00216 VWD von Willebrand 25.7 34 0.00073 26.0 0.9 14 209-222 142-155 (162)
42 PF08477 Miro: Miro-like prote 24.3 1.5E+02 0.0032 20.6 4.2 27 183-214 89-115 (119)
43 cd07400 MPP_YydB Bacillus subt 22.6 1.4E+02 0.003 21.8 3.8 13 207-219 36-48 (144)
44 PRK11340 phosphodiesterase Yae 22.0 1.5E+02 0.0033 24.8 4.3 42 163-218 51-92 (271)
No 1
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=100.00 E-value=2.1e-37 Score=283.31 Aligned_cols=188 Identities=29% Similarity=0.524 Sum_probs=151.3
Q ss_pred CcccccCCCCCCCcCcChHHHHHHHHHHHhcCCCcEEEEeeecCCc---CcccccccCCCcEEEEccCCC-------Cee
Q 047989 1 VYVRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNED---FYKGNMETEGYSSLYIQRSGQ-------KRD 70 (223)
Q Consensus 1 ~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~pDIi~LQEv~~~~---~l~~~L~~~gY~~~~~~~~~~-------~~~ 70 (223)
+||++++|+|||++.++|++|+++|+++|..++|||||||||+..+ ++.+.|...||..++..+.+. ..+
T Consensus 266 ~ya~~dly~ycp~~aL~W~yRk~lIl~EI~~~~aDIICLQEV~~~~~~d~~~p~L~~~GY~Gv~~~Kt~~~~~~~~~~~D 345 (606)
T PLN03144 266 LYATSDMYSYCPPWALSWTYRRQNLLREIVGYRADILCLQEVQSDHFEEFFAPELDKHGYQALYKKKTTEVYTGNTYVID 345 (606)
T ss_pred cccCcccccCCCccccCHHHHHHHHHHHHHhcCCCEEEEeecCHHHHHHHHHhhhhhcCceEEEeCCCCccccccccCCc
Confidence 4899999999999999999999999999999999999999997643 567889888999998866432 578
Q ss_pred eEEEEEecCCceeeeEeEEecccccccccCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCcEE
Q 047989 71 GCGIFYKISCAELLVEDRIYYNELVNSIKDGSSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVG 150 (223)
Q Consensus 71 G~ai~~~~sr~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~~~ 150 (223)
|||||||++||++++...+.|+....+..+. .+++..|.. . ..++.|+++|
T Consensus 346 GcAIFyr~drFeLv~~~~ief~~~~lslt~~------------------~~~s~~~~~--------~---l~Rl~kdNVA 396 (606)
T PLN03144 346 GCATFFRRDRFSLVKKYEVEFNKAAQSLTEA------------------LIPSAQKKA--------A---LNRLLKDNVA 396 (606)
T ss_pred eeEEEEECcceEEEEeeeeeccchhhccCcc------------------ccccccchh--------h---hhhhccCcEE
Confidence 9999999999999999999998755433220 011111211 0 1134467899
Q ss_pred EEEEEeecCC--------CCcEEEEEeeeeecCCCCCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCCCC
Q 047989 151 IMAAFRLKGP--------FDHVVIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVPGD 222 (223)
Q Consensus 151 ~~~~l~~~~~--------~~~~~~V~ntHL~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p~s 222 (223)
++++|+++.+ .++.|+|+||||+|+|...++|+.|++.|++.|+++.+. .+.|+|||||||+.|+|
T Consensus 397 liv~Le~k~~~~~~~~~~~~~~l~VaNTHL~~~p~~~dvRl~Q~~~Ll~~l~~~~~~------~~~PvIlcGDFNS~P~S 470 (606)
T PLN03144 397 LIVVLEAKFGNQGADNGGKRQLLCVANTHIHANQELKDVKLWQVHTLLKGLEKIAAS------ADIPMLVCGDFNSVPGS 470 (606)
T ss_pred EEEEEEEecccccccCCCCccEEEEEEeeeccCCccchhHHHHHHHHHHHHHHHhhc------CCCceEEeccCCCCCCC
Confidence 9999999721 235689999999999999999999999999999988542 36899999999999998
Q ss_pred C
Q 047989 223 K 223 (223)
Q Consensus 223 ~ 223 (223)
+
T Consensus 471 ~ 471 (606)
T PLN03144 471 A 471 (606)
T ss_pred h
Confidence 4
No 2
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=99.97 E-value=3.5e-31 Score=232.54 Aligned_cols=170 Identities=28% Similarity=0.541 Sum_probs=144.5
Q ss_pred cccCCCCCCCcCcChHHHHHHHHHHHhcCCCcEEEEeeecCCc---CcccccccCCCcEEEEccCCCCeeeEEEEEecCC
Q 047989 4 RSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNED---FYKGNMETEGYSSLYIQRSGQKRDGCGIFYKISC 80 (223)
Q Consensus 4 ~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~pDIi~LQEv~~~~---~l~~~L~~~gY~~~~~~~~~~~~~G~ai~~~~sr 80 (223)
+..+|+ |+...++|..|...|+.+|..++|||||||||+..+ .+.+.+...||..++...++.+.+||||+|+.++
T Consensus 134 ~r~~~~-~s~~~L~W~~R~~~Ll~EL~~~dpDIlCLQEVq~d~~~~~~~~~~~~lGy~~~~~r~t~~KthG~ai~w~~~~ 212 (495)
T KOG2338|consen 134 RRLYFP-ESGPALKWLRRSQNLLNELKHYDPDVLCLQEVQEDHYPEFWQPLLGKLGYTGFFKRRTGTKTHGVAILWHSAK 212 (495)
T ss_pred HHhhcc-CChhhcchhHHhHHHHHHHhhcCCCeeeehhhhhhhhHHHHHHHHhhcCceEEEEeccCCCCceEEEEEeccc
Confidence 456788 999999999999999999999999999999998755 5677777889999887777778999999999999
Q ss_pred ceeeeEeEEecccccccccCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCcEEEEEEEeecCC
Q 047989 81 AELLVEDRIYYNELVNSIKDGSSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGP 160 (223)
Q Consensus 81 ~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~~~~~~~l~~~~~ 160 (223)
|.++....+.+.+... ...+|++|++++.|+.+.+
T Consensus 213 F~lv~~~~l~y~~~~~---------------------------------------------~l~n~~NV~lvv~l~f~~~ 247 (495)
T KOG2338|consen 213 FKLVNHSELNYFDSGS---------------------------------------------ALANRDNVGLVVSLEFRLV 247 (495)
T ss_pred ceecccchhhcccccc---------------------------------------------hhhcccceeEEEEEEeccc
Confidence 9999999888763210 1445788999999998533
Q ss_pred C--CcEEEEEeeeeecCCCCCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCCCCC
Q 047989 161 F--DHVVIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVPGDK 223 (223)
Q Consensus 161 ~--~~~~~V~ntHL~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p~s~ 223 (223)
. ++.++|+||||.|+|.+.++|++|+..|++.++++.+.. ....|+|+|||||+.|+||
T Consensus 248 ~~~sq~ilVanTHLl~np~~~~vrL~Q~~iiL~~~~~~~~~~----~~~~pi~l~GDfNt~p~~~ 308 (495)
T KOG2338|consen 248 DESSQGILVANTHLLFNPSRSDVRLAQVYIILAELEKMSKSS----KSHWPIFLCGDFNTEPDSP 308 (495)
T ss_pred CcccCceEEEeeeeeecCcccchhhHHHHHHHHHHHHHHhhc----ccCCCeEEecCCCCCCCCC
Confidence 2 346899999999999999999999999999999986532 2468999999999999986
No 3
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=99.91 E-value=5.7e-25 Score=186.63 Aligned_cols=187 Identities=33% Similarity=0.485 Sum_probs=132.0
Q ss_pred CcccccCCCCCCCcCcChHHHHHHHHHHHhcCCCcEEEEeeecCCc---CcccccccCCCcEEEEccCC----------C
Q 047989 1 VYVRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNED---FYKGNMETEGYSSLYIQRSG----------Q 67 (223)
Q Consensus 1 ~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~pDIi~LQEv~~~~---~l~~~L~~~gY~~~~~~~~~----------~ 67 (223)
.||++.+|+|+ +.+++|.+|.+.++++|..++|||+|||||+..+ ++.+.|...||..+|.++.+ .
T Consensus 42 ~y~~r~~y~~s-~~aL~W~~R~~~L~~EL~~Yn~Di~CLQEvd~~~~~~fw~~~l~~~gY~~if~~k~~k~~~m~~~d~t 120 (378)
T COG5239 42 TYATRKMYPYS-GWALKWSYRSRLLLQELLYYNADILCLQEVDAEDFEDFWKDQLGKLGYDGIFIPKERKVKWMIDYDTT 120 (378)
T ss_pred hhccccccCCc-hhhhhhHHHHHHHHHHHhccCCceeeeehhhhhHHHHHHHHHhcccccceEEecCCCccccccccccc
Confidence 49999999999 8999999999999999999999999999999854 78899999999999987654 1
Q ss_pred CeeeEEEEEec----CCceeeeEeEEecccccccccCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCcccc
Q 047989 68 KRDGCGIFYKI----SCAELLVEDRIYYNELVNSIKDGSSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVR 143 (223)
Q Consensus 68 ~~~G~ai~~~~----sr~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 143 (223)
..+||+||+++ ||+-++-.....|..-......-+.+..+ +-.-
T Consensus 121 ~~dGc~if~k~~~~~sk~~li~~~~~~f~~p~~~~er~r~t~~~--------------------------------lnri 168 (378)
T COG5239 121 KVDGCAIFLKRFIDSSKLGLILAVTHLFWHPYGYYERFRQTYIL--------------------------------LNRI 168 (378)
T ss_pred ccceEEEEEEeccccchhhhhhhhhHhhcccceeehhhhHHHHH--------------------------------HHHH
Confidence 56899999987 33222221111111000000000000000 0000
Q ss_pred ccCCc---EEEEEEEeecCCCCcEEEEEeeeeecCCCCCchhHHHHHHHHHHHHHHHHHhcc---------CCCCCCcEE
Q 047989 144 LKRDC---VGIMAAFRLKGPFDHVVIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSD---------RYDCVPSVI 211 (223)
Q Consensus 144 ~~r~~---~~~~~~l~~~~~~~~~~~V~ntHL~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~---------~~~~~~pvI 211 (223)
....+ +++++.+..+.+|.. ++|+|||++|+|.+.++++-|+.++++++++..++... .+ +..++.
T Consensus 169 ~e~~~~~w~~l~~~l~n~e~gd~-~~va~Th~~w~~~~~dvk~iq~s~l~~~~k~~~~e~~~~d~~~~d~k~~-~~~~~l 246 (378)
T COG5239 169 GEKDNIAWVCLFVGLFNKEPGDT-PYVANTHLPWDPKYRDVKLIQCSLLYRELKKVLKEELNDDKEEGDIKSY-PEVDIL 246 (378)
T ss_pred hhhhhcchhheeeeeccCCCCCc-eeEEeccccccCCCCchheehhhHHHHHHHHHhhhcCCcchhccccccC-cccccc
Confidence 01122 337888899888865 69999999999999999999999999999998766431 11 123789
Q ss_pred EeccCCCCCCC
Q 047989 212 VAGDFNSVPGD 222 (223)
Q Consensus 212 l~GDFN~~p~s 222 (223)
+|||||+.-.|
T Consensus 247 ~~gd~ns~~~s 257 (378)
T COG5239 247 ITGDFNSLRAS 257 (378)
T ss_pred cCCCccceecc
Confidence 99999996544
No 4
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription]
Probab=99.87 E-value=3.8e-23 Score=180.22 Aligned_cols=186 Identities=31% Similarity=0.496 Sum_probs=134.5
Q ss_pred cccccCCCCCCCcCcChHHHHHHHHHHHhcCCCcEEEEeeecCCc-CcccccccCCCcEEEEccC------CCCeeeEEE
Q 047989 2 YVRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNED-FYKGNMETEGYSSLYIQRS------GQKRDGCGI 74 (223)
Q Consensus 2 ~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~pDIi~LQEv~~~~-~l~~~L~~~gY~~~~~~~~------~~~~~G~ai 74 (223)
|+....|.+||..++.|.+|+..+.++|...+|||+|||||+.+. ++.+.|...||...+.+++ .+..+||||
T Consensus 32 ~~~~~~~~~~~~~~~~w~~r~~~~~~ei~~~~ad~icLqev~~~~~~~~p~l~~~gY~g~~~~k~~~~~~~~~~~dGcai 111 (361)
T KOG0620|consen 32 YATSKLYMYCPSWALSWEYRRQLLLEEILNYNADILCLQEVDRYHDFFSPELEASGYSGIFIEKTRMGEVELEKIDGCAI 111 (361)
T ss_pred hcccCCCcccchhhccHHHHHHHHHHHHhCCCcceeecchhhHHHHHccchhhhcCCcceeecccccchhhcccCceeee
Confidence 788889999999999999999999999999999999999996655 6778887779999998764 456899999
Q ss_pred EEecCCceeeeEeEEecccccccccCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCcEEE-EE
Q 047989 75 FYKISCAELLVEDRIYYNELVNSIKDGSSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGI-MA 153 (223)
Q Consensus 75 ~~~~sr~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~~~~-~~ 153 (223)
|+++++|+++++..+.+++...+..+ . . ..........++.+. ++
T Consensus 112 ffk~s~f~li~~~~i~~n~~~~~~~~--------~------------------~--------~~~~~~~~~~d~~~~~l~ 157 (361)
T KOG0620|consen 112 FFKPSLFQLIHSSAIELNQLALSRLP--------P------------------N--------IAQLNRLTTLDNSGNKLV 157 (361)
T ss_pred eecchHHhhhhhhhhhhHHHHHhhcc--------h------------------h--------HHHHHhhhccccccchhh
Confidence 99999999999999998875532211 0 0 000000112233333 23
Q ss_pred EEeecCCCCcEEE----EEeeeeecCCCCCchhHHHHHHHHHHHHHHHHHh-----ccCC---CCCCcEEEeccCCCCCC
Q 047989 154 AFRLKGPFDHVVI----VATTHLYWDPELADVKLAQAKYLSSRLAEFRTQV-----SDRY---DCVPSVIVAGDFNSVPG 221 (223)
Q Consensus 154 ~l~~~~~~~~~~~----V~ntHL~~~~~~~~~R~~Q~~~l~~~l~~~~~~~-----~~~~---~~~~pvIl~GDFN~~p~ 221 (223)
.|+... ++. +. ++|+|+.|.+...++++.|+.+++..++...... .+.+ ....|+++|||||++|.
T Consensus 158 ~L~~~~-~~~-~~~~~~~~n~h~~~~~~~~~vkl~qv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~gdfNs~p~ 235 (361)
T KOG0620|consen 158 SLKAEL-GNM-VSLPHLLLNTHILWDLPYEDVKLFQVLTLLLELAPLSPEILKIYREGNLATRIASFPLLLCGDFNSTPL 235 (361)
T ss_pred hhhhhc-CCc-eeeccccccceeccCCCccchHHHHHHHHhhcccccchhhhhhhccccccccccccceeeeccccCCCC
Confidence 444332 222 22 3799999999999999999999999854211111 1111 13489999999999998
Q ss_pred CC
Q 047989 222 DK 223 (223)
Q Consensus 222 s~ 223 (223)
+|
T Consensus 236 ~~ 237 (361)
T KOG0620|consen 236 SP 237 (361)
T ss_pred cc
Confidence 75
No 5
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=99.79 E-value=1.4e-18 Score=148.09 Aligned_cols=153 Identities=16% Similarity=0.092 Sum_probs=101.8
Q ss_pred cCcChHHHHHHHHHHHhcCCCcEEEEeeecCCc---Ccccccc-cCCCcEEEEccC--------------CCCeeeEEEE
Q 047989 14 ACLKWKNRSDAVLTVLKSFGADFLCLQELDNED---FYKGNME-TEGYSSLYIQRS--------------GQKRDGCGIF 75 (223)
Q Consensus 14 ~~~~w~~R~~~i~~~I~~~~pDIi~LQEv~~~~---~l~~~L~-~~gY~~~~~~~~--------------~~~~~G~ai~ 75 (223)
....|+.|..+|++.+...+|||||||||...+ .+...|+ ..+|........ .....|++|+
T Consensus 17 ~~~g~~~R~~~i~~~~~~~~~DVV~LQEv~~~~~~~~l~~~L~~~yp~~~~~~g~~~~g~~~~~g~~~~~~~~~~G~~iL 96 (283)
T TIGR03395 17 PNWGQMERADLIASADYIKNQDVVILNEAFDTSASKRLLDNLREEYPYQTDVIGRSKKGWDKTLGNYSSSALEDGGVAIV 96 (283)
T ss_pred CCccHhHHHHHHHHhhcccCCCEEEEecccchHHHHHHHHHHHhhCCceEeecccccccchhccccccccCccCCEEEEE
Confidence 345689999999999999999999999997643 2445554 233332111110 1245699999
Q ss_pred EecCCceeeeEeEEecccccccccCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCcEEEEEEE
Q 047989 76 YKISCAELLVEDRIYYNELVNSIKDGSSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAF 155 (223)
Q Consensus 76 ~~~sr~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~~~~~~~l 155 (223)
|||||+......|+... ...| ...| .++.+.+
T Consensus 97 ---Sr~Pi~~~~~~~f~~~~---------------------------~~d~----------------~~~k--g~l~a~i 128 (283)
T TIGR03395 97 ---SKWPIEEKIQYIFNKGC---------------------------GADN----------------LSNK--GFAYVKI 128 (283)
T ss_pred ---ECCCccccEEEEccCCC---------------------------CCcc----------------ccCC--ceEEEEE
Confidence 78999987766554210 0000 1124 3456665
Q ss_pred eecCCCCcEEEEEeeeeecCCC------CCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCCCCC
Q 047989 156 RLKGPFDHVVIVATTHLYWDPE------LADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVPGDK 223 (223)
Q Consensus 156 ~~~~~~~~~~~V~ntHL~~~~~------~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p~s~ 223 (223)
.. +| ..+.|+||||.+... ...+|..|++.|.++|++. ..+.+.|+|||||||..|+|+
T Consensus 129 ~~--~g-~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~~------~~~~~~pvIl~GDfN~~~~s~ 193 (283)
T TIGR03395 129 NK--NG-KKFHVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFIDSK------NIPKDETVLIGGDLNVNKGSN 193 (283)
T ss_pred ec--CC-eEEEEEEeCCCCCcccccccccHHHHHHHHHHHHHHHhhc------cCCCCceEEEEeeCCCCCCCH
Confidence 53 34 568999999987431 1468999999998888652 123467899999999999873
No 6
>PRK11756 exonuclease III; Provisional
Probab=99.72 E-value=1.1e-16 Score=135.17 Aligned_cols=141 Identities=18% Similarity=0.209 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEeeecCCc-Cc-ccccccCCCcEEEEccCCCCeeeEEEEEecCCceeeeEeEEeccccc
Q 047989 18 WKNRSDAVLTVLKSFGADFLCLQELDNED-FY-KGNMETEGYSSLYIQRSGQKRDGCGIFYKISCAELLVEDRIYYNELV 95 (223)
Q Consensus 18 w~~R~~~i~~~I~~~~pDIi~LQEv~~~~-~l-~~~L~~~gY~~~~~~~~~~~~~G~ai~~~~sr~~i~~~~~i~~~~~~ 95 (223)
+..|...++++|...+||||||||+.... .+ ...+...||.+++.. ..+..|+||+ ||++++.... .+...
T Consensus 11 ~~~~~~~i~~~i~~~~pDIi~LQE~~~~~~~~~~~~~~~~gy~~~~~~--~~~~~Gvail---Sr~p~~~~~~-~~~~~- 83 (268)
T PRK11756 11 LRARPHQLEAIIEKHQPDVIGLQETKVHDEMFPLEEVEALGYHVFYHG--QKGHYGVALL---SKQTPIAVRK-GFPTD- 83 (268)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecccccccCCHHHHHhcCCEEEEeC--CCCCCEEEEE---ECCChHHeEE-CCCCc-
Confidence 45667889999999999999999996433 11 222334589776653 3467899999 5666654321 11100
Q ss_pred ccccCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCcEEEEEEEeecCCCCcEEEEEeeeeecC
Q 047989 96 NSIKDGSSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVATTHLYWD 175 (223)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~~V~ntHL~~~ 175 (223)
. . ...| -++.+.++.. ++. +.|+|+|+...
T Consensus 84 ----------------------------~--~---------------~~~~--r~l~~~i~~~--~g~-~~v~n~y~P~~ 113 (268)
T PRK11756 84 ----------------------------D--E---------------EAQR--RIIMATIPTP--NGN-LTVINGYFPQG 113 (268)
T ss_pred ----------------------------c--c---------------cccC--CEEEEEEEcC--CCC-EEEEEEEecCC
Confidence 0 0 0112 2467777663 234 79999999654
Q ss_pred CCCC-----chhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCCCC
Q 047989 176 PELA-----DVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVPGD 222 (223)
Q Consensus 176 ~~~~-----~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p~s 222 (223)
.... ..|..|+..|.+.+++..+ .+.|+|+|||||..|.+
T Consensus 114 ~~~~~~~~~~~r~~~~~~l~~~l~~~~~-------~~~pvIl~GDfN~~~~~ 158 (268)
T PRK11756 114 ESRDHPTKFPAKRQFYQDLQNYLETELS-------PDNPLLIMGDMNISPTD 158 (268)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHhc-------cCCCEEEEeecccCCCh
Confidence 2211 2467788888888776532 35799999999999875
No 7
>PRK05421 hypothetical protein; Provisional
Probab=99.72 E-value=5.6e-17 Score=136.97 Aligned_cols=135 Identities=22% Similarity=0.203 Sum_probs=84.6
Q ss_pred HHHHHHHhcCCCcEEEEeeecCCcCcccccccCCCcEEEEc--cCCCCeeeEEEEEecCCceeeeEeEEecccccccccC
Q 047989 23 DAVLTVLKSFGADFLCLQELDNEDFYKGNMETEGYSSLYIQ--RSGQKRDGCGIFYKISCAELLVEDRIYYNELVNSIKD 100 (223)
Q Consensus 23 ~~i~~~I~~~~pDIi~LQEv~~~~~l~~~L~~~gY~~~~~~--~~~~~~~G~ai~~~~sr~~i~~~~~i~~~~~~~~~~~ 100 (223)
...++.| ..+||||||||++....+...+...+|.+.+.. ....+..|+||+ ||+++.....+...+
T Consensus 60 ~~~l~~l-~~~~DiI~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvaiL---SR~pi~~~~~~~~~~------- 128 (263)
T PRK05421 60 LSVLKNL-GKDADLVLLQEAQTTPELVQFATANYLAADQAPAFVLPQHPSGVMTL---SKAHPVYCCPLRERE------- 128 (263)
T ss_pred HHHHHHh-ccCCCEEEEEecccCcchHHHhhcccchHHhccccccCCCccceeEe---eecccceeeccCCCC-------
Confidence 3455555 889999999999753322222222334332221 123467899999 778887644331100
Q ss_pred CCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCcEEEEEEEeecCCCCcEEEEEeeeeecCCCCCc
Q 047989 101 GSSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVATTHLYWDPELAD 180 (223)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~~V~ntHL~~~~~~~~ 180 (223)
.| ...+| .++++.++.. +++.+.|+||||.+......
T Consensus 129 ------------------------~~---------------~~~~r--~~l~a~~~~~--~g~~l~v~ntHl~~~~~~~~ 165 (263)
T PRK05421 129 ------------------------PW---------------LRLPK--SALITEYPLP--NGRTLLVVNIHAINFSLGVD 165 (263)
T ss_pred ------------------------cc---------------ccCcc--eeEEEEEEeC--CCCEEEEEEECccccCcChH
Confidence 00 01235 5678887764 23557999999974322346
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCCC
Q 047989 181 VKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVPG 221 (223)
Q Consensus 181 ~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p~ 221 (223)
.|..|++.|.+.+... ..|+|+|||||+.+.
T Consensus 166 ~r~~q~~~l~~~~~~~----------~~p~Il~GDFN~~~~ 196 (263)
T PRK05421 166 VYSKQLEPIGDQIAHH----------SGPVILAGDFNTWSR 196 (263)
T ss_pred HHHHHHHHHHHHHHhC----------CCCEEEEcccccCcc
Confidence 7899999888777542 469999999999764
No 8
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=99.71 E-value=2.8e-17 Score=136.37 Aligned_cols=142 Identities=20% Similarity=0.250 Sum_probs=94.9
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEeeecCC---c-----Ccccccc-cCCCcEEE-Ecc----CCCCeeeEEEEEecCCce
Q 047989 17 KWKNRSDAVLTVLKSFGADFLCLQELDNE---D-----FYKGNME-TEGYSSLY-IQR----SGQKRDGCGIFYKISCAE 82 (223)
Q Consensus 17 ~w~~R~~~i~~~I~~~~pDIi~LQEv~~~---~-----~l~~~L~-~~gY~~~~-~~~----~~~~~~G~ai~~~~sr~~ 82 (223)
++..+.+++.+.|.+..+|||||||++.. . ++...+. ..+..+.+ ... .+...+|++|+ |+++
T Consensus 25 d~r~~~~r~~~~i~~~~~Div~LQEv~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~GnaiL---S~~p 101 (259)
T COG3568 25 DRRFDLPRIAEVIREVGADIVALQEVDGAFGRHRDGLLDLPHLLGRLGLAPYWWSGAAFGAVYGEGQHGNAIL---SRLP 101 (259)
T ss_pred CceecHHHHHHHHHhhccCeeeeecccccccccccccchhHHHHHHhcCCccccchhhhhhhcccceeeeEEE---ecCc
Confidence 67778899999999999999999999851 1 1111111 11211111 111 24578999999 5777
Q ss_pred eeeEeEEecccccccccCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCcEEEEEEEeecCCCC
Q 047989 83 LLVEDRIYYNELVNSIKDGSSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFD 162 (223)
Q Consensus 83 i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~~~~~~~l~~~~~~~ 162 (223)
+.......++.. .| ..+| .++++.++.. .|
T Consensus 102 i~~v~~~~lp~~---------------------------------------~~-------~~~R--gal~a~~~~~-~g- 131 (259)
T COG3568 102 IRDVENLALPDP---------------------------------------TG-------LEPR--GALLAEIELP-GG- 131 (259)
T ss_pred ccchhhccCCCC---------------------------------------CC-------CCCc--eeEEEEEEcC-CC-
Confidence 776554443320 00 2346 5788988876 33
Q ss_pred cEEEEEeeeeecCCCCCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCCCCC
Q 047989 163 HVVIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVPGDK 223 (223)
Q Consensus 163 ~~~~V~ntHL~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p~s~ 223 (223)
+.|.|+|+||.+. ...|++|+..|++.+. + +...|+|+|||||++|+|+
T Consensus 132 ~~l~V~~~HL~l~---~~~R~~Q~~~L~~~~~-l--------~~~~p~vl~GDFN~~p~s~ 180 (259)
T COG3568 132 KPLRVINAHLGLS---EESRLRQAAALLALAG-L--------PALNPTVLMGDFNNEPGSA 180 (259)
T ss_pred CEEEEEEEecccc---HHHHHHHHHHHHhhcc-C--------cccCceEEEccCCCCCCCc
Confidence 5689999999975 4789999999987211 1 1234999999999999985
No 9
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=99.66 E-value=1.7e-15 Score=128.14 Aligned_cols=150 Identities=15% Similarity=0.168 Sum_probs=102.1
Q ss_pred cCcChHHHHHHHHHHHhcCCCcEEEEeeecCCc--Cccc---ccc---cCCCcEEEEccCC--CCeeeEEEEEecCCcee
Q 047989 14 ACLKWKNRSDAVLTVLKSFGADFLCLQELDNED--FYKG---NME---TEGYSSLYIQRSG--QKRDGCGIFYKISCAEL 83 (223)
Q Consensus 14 ~~~~w~~R~~~i~~~I~~~~pDIi~LQEv~~~~--~l~~---~L~---~~gY~~~~~~~~~--~~~~G~ai~~~~sr~~i 83 (223)
....|+.|+..|++.|. ++|||++|||...+ .+.. .|. ..+|.++..++.+ ..++..|+|||++++++
T Consensus 31 ~k~~~~~r~~~i~~il~--~~DIiglQEV~d~q~~~l~~ll~~Ln~~~~~~Y~~v~s~r~gr~~~~E~~a~~Yr~drv~v 108 (276)
T smart00476 31 SKMSNATLMSIIVKILS--RYDIALVQEVRDSDLSAVPKLMDQLNSDSPNTYSYVSSEPLGRNSYKEQYLFLYRSDLVSV 108 (276)
T ss_pred ccccHHHHHHHHHHHhc--cCCEEEEEEeecchhHHHHHHHHHHhhcCCCCceEEecCCCCCCCCCEEEEEEEecceEEE
Confidence 44679999999999999 78999999998644 3332 232 1368877765433 25688999999999999
Q ss_pred eeEeEEecccccccccCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCcEEEEEEEeecCCCCc
Q 047989 84 LVEDRIYYNELVNSIKDGSSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDH 163 (223)
Q Consensus 84 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~~~~~~~l~~~~~~~~ 163 (223)
++...+ ++.. ..|.. .+.| ...++.++.+.++..
T Consensus 109 ~~~~~f--~d~~----------------------------~~~~~--------------~F~R--eP~~~~F~~~~~~~~ 142 (276)
T smart00476 109 LDSYLY--DDGC----------------------------ECGND--------------VFSR--EPFVVKFSSPSTAVK 142 (276)
T ss_pred ccccee--cCCC----------------------------CCccc--------------cccc--cceEEEEEeCCCCCc
Confidence 987554 3210 01211 3457 457899998865445
Q ss_pred EEEEEeeeeecCCCCCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCCC
Q 047989 164 VVIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVPG 221 (223)
Q Consensus 164 ~~~V~ntHL~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p~ 221 (223)
.|.++|+|+.+. .+.+++..|.+.+....+.+ ...|+|++||||..+.
T Consensus 143 ~F~li~~H~~p~-----~~~~e~~aL~~v~~~~~~~~-----~~~~villGDFNa~~~ 190 (276)
T smart00476 143 EFVIVPLHTTPE-----AAVAEIDALYDVYLDVRQKW-----GTEDVIFMGDFNAGCS 190 (276)
T ss_pred cEEEEEecCChH-----HHHHHHHHHHHHHHHHHHhh-----ccCCEEEEccCCCCCC
Confidence 589999999753 34455555555444433221 3579999999999874
No 10
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=99.58 E-value=2.5e-14 Score=116.50 Aligned_cols=147 Identities=16% Similarity=0.203 Sum_probs=79.3
Q ss_pred HHHHHHHHHhcCCCcEEEEeeecCC--c-CcccccccCCC-cEEEEccCCC----CeeeEEEEEecCCceeeeEeEEecc
Q 047989 21 RSDAVLTVLKSFGADFLCLQELDNE--D-FYKGNMETEGY-SSLYIQRSGQ----KRDGCGIFYKISCAELLVEDRIYYN 92 (223)
Q Consensus 21 R~~~i~~~I~~~~pDIi~LQEv~~~--~-~l~~~L~~~gY-~~~~~~~~~~----~~~G~ai~~~~sr~~i~~~~~i~~~ 92 (223)
+...|+++|..++||||||||+... . .+...+....+ .......... ...|++|++|.. +.......+.
T Consensus 17 ~~~~i~~~i~~~~~Dii~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~r~~---~~~~~~~~~~ 93 (249)
T PF03372_consen 17 KRREIAQWIAELDPDIIALQEVRNDDLSELLEEQLRGYLGYYGSFWPGNSPPSDAGGYGVAILSRSP---IFSSVSYVFS 93 (249)
T ss_dssp HHHHHHHHHHHHT-SEEEEEEEESHHHHHHHHHHHHTCTTHEEEEEETSSSTTCSSSEEEEEEESSC---CCEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEecchhhhhhhhhhhhcccccccccceeccccccccccCceEEEEEccc---cccccccccc
Confidence 3445999999999999999999852 2 33344543332 3333322111 368999997653 4433333331
Q ss_pred cccccccCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCcEEEEEEEeecCCCCcEEEEEeeee
Q 047989 93 ELVNSIKDGSSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVATTHL 172 (223)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~~V~ntHL 172 (223)
.... .+ .. ......+... .+.++.. + ..|.|+|+|+
T Consensus 94 ~~~~----------------------------~~---------~~--~~~~~~~~~~--~~~~~~~--~-~~i~v~~~H~ 129 (249)
T PF03372_consen 94 LFSK----------------------------PG---------IR--IFRRSSKSKG--IVPVSIN--G-KPITVVNVHL 129 (249)
T ss_dssp EESS----------------------------ST---------TC--EEEEEEEEEE--EEEEEEE--T-EEEEEEEEET
T ss_pred cccc----------------------------cc---------cc--cccccccccc--ccccccc--c-eEEEeeeccc
Confidence 1100 00 00 0000011111 1112222 3 5579999998
Q ss_pred ecCCCCCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCCCC
Q 047989 173 YWDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVPGD 222 (223)
Q Consensus 173 ~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p~s 222 (223)
.+. ...|..|.+.+++.+..+.+.. ...|+|||||||+.|.+
T Consensus 130 ~~~---~~~~~~~~~~~~~~~~~~~~~~-----~~~~~iv~GDfN~~~~~ 171 (249)
T PF03372_consen 130 PSS---NDERQEQWRELLARIQKIYADN-----PNEPVIVMGDFNSRPDS 171 (249)
T ss_dssp TSH---HHHHHHHHHHHHHHHHHHHHTS-----SCCEEEEEEE-SS-BSS
T ss_pred ccc---chhhhhhhhhhhhhhhhccccc-----ccceEEEEeecccCCcc
Confidence 653 3556666778888888775421 12379999999998865
No 11
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=99.54 E-value=1.8e-13 Score=114.72 Aligned_cols=135 Identities=25% Similarity=0.301 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhcCCCcEEEEeeecCCc-Ccccc-cccCCCcEEEEccCCCCeeeEEEEEecCCceeeeEeEEeccccccc
Q 047989 20 NRSDAVLTVLKSFGADFLCLQELDNED-FYKGN-METEGYSSLYIQRSGQKRDGCGIFYKISCAELLVEDRIYYNELVNS 97 (223)
Q Consensus 20 ~R~~~i~~~I~~~~pDIi~LQEv~~~~-~l~~~-L~~~gY~~~~~~~~~~~~~G~ai~~~~sr~~i~~~~~i~~~~~~~~ 97 (223)
.+...+.++|..++||||||||+.... .+... +...||..++.+. .+..|+||++|...+.+. . .+....
T Consensus 13 ~~~~~~~~~l~~~~~DIi~LQE~~~~~~~~~~~~~~~~g~~~~~~~~--~g~~Gvailsr~~~~~~~---~-~~~~~~-- 84 (254)
T TIGR00195 13 ARLHKGLAWLKENQPDVLCLQETKVQDEQFPLEPFHKEGYHVFFSGQ--KGYSGVAIFSKEEPLSVR---R-GFGVEE-- 84 (254)
T ss_pred HhHHHHHHHHHhcCCCEEEEEecccchhhCCHHHhhcCCcEEEEecC--CCcceEEEEEcCCcceEE---E-CCCCcc--
Confidence 455668999999999999999996543 23222 3346887766543 467799999764332211 0 011000
Q ss_pred ccCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCcEEEEEEEeecCCCCcEEEEEeeeeecCCC
Q 047989 98 IKDGSSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVATTHLYWDPE 177 (223)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~~V~ntHL~~~~~ 177 (223)
. + ...| + +.+ +.. . +.|+|||++....
T Consensus 85 ----------------------------~---------~------~~~r--~-i~~--~~~----~-~~l~~~~~p~~~~ 111 (254)
T TIGR00195 85 ----------------------------E---------D------AEGR--I-IMA--EFD----S-FLVINGYFPNGSR 111 (254)
T ss_pred ----------------------------c---------c------cCCC--E-EEE--EEC----C-EEEEEEEccCCCC
Confidence 0 0 0113 2 233 321 3 6899999986321
Q ss_pred CC----chhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCCCC
Q 047989 178 LA----DVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVPGD 222 (223)
Q Consensus 178 ~~----~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p~s 222 (223)
.. ..|..+.+.|.+.++++.. .+.|+|+|||||..|.+
T Consensus 112 ~~~~~~~~r~~~~~~l~~~~~~~~~-------~~~pvIi~GDfN~~~~~ 153 (254)
T TIGR00195 112 DDSEKLPYKLQWLEALQNYLEKLVD-------KDKPVLICGDMNIAPTE 153 (254)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHh-------cCCcEEEEeecccCCCh
Confidence 11 2366777777777776532 35799999999999864
No 12
>PTZ00297 pantothenate kinase; Provisional
Probab=99.52 E-value=1.8e-13 Score=137.14 Aligned_cols=149 Identities=16% Similarity=0.192 Sum_probs=97.6
Q ss_pred HHHHHHHHhc-CCCcEEEEeeecCCc--------------CcccccccCCCcEEEEccCC---C-------CeeeEEEEE
Q 047989 22 SDAVLTVLKS-FGADFLCLQELDNED--------------FYKGNMETEGYSSLYIQRSG---Q-------KRDGCGIFY 76 (223)
Q Consensus 22 ~~~i~~~I~~-~~pDIi~LQEv~~~~--------------~l~~~L~~~gY~~~~~~~~~---~-------~~~G~ai~~ 76 (223)
.++|...|.. .+||||||||+.... .+...+...||.++...++. . ...|+||+
T Consensus 30 ~~ri~~~i~~l~~~DIv~lQEvf~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~AIL- 108 (1452)
T PTZ00297 30 HERIETFLASVDAYDVVLLQEVYAASVLPYFLQKQLCFQKMLVDELKARGFHHYVISKQPSYLTMLRYNVCSDNGLIIA- 108 (1452)
T ss_pred HHHHHHHHHhccCCCEEEEecccccccccccccccchhhHHHHHHHHhcCCceeEeecCccccccccCccccCCEEEEE-
Confidence 4777778887 478999999998632 12334455688664433321 1 56799999
Q ss_pred ecCCceeeeEeEEecccccccccCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCcEEEEEEEe
Q 047989 77 KISCAELLVEDRIYYNELVNSIKDGSSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFR 156 (223)
Q Consensus 77 ~~sr~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~~~~~~~l~ 156 (223)
|||||++...+.++.... ++. ...| .++.+.++
T Consensus 109 --SR~PI~~~~~~~l~~~~~--------------------------------------~~~-----~~~R--G~L~a~I~ 141 (1452)
T PTZ00297 109 --SRFPIWQRGSYTFRNHER--------------------------------------GEQ-----SVRR--GCLFAEVE 141 (1452)
T ss_pred --ECCChhhceeeecCcccc--------------------------------------ccc-----cccc--ceEEEEEE
Confidence 899999999887754210 000 1235 45777777
Q ss_pred ecCC--CCcEEEEEeeeeecCCCCCchhHHHHHHHHHHHHHHHHHh-cc-CCCCCCcEEEeccCCCC
Q 047989 157 LKGP--FDHVVIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQV-SD-RYDCVPSVIVAGDFNSV 219 (223)
Q Consensus 157 ~~~~--~~~~~~V~ntHL~~~~~~~~~R~~Q~~~l~~~l~~~~~~~-~~-~~~~~~pvIl~GDFN~~ 219 (223)
.... +.+.+.|+||||.+... ...|..|++.+.++++...... +. ..+...|+|||||||..
T Consensus 142 vp~~~g~~~~v~v~~tHL~~~~~-~~~R~~Q~~ql~~~i~~~i~~~~~~~~~~~~~PvILaGDFN~~ 207 (1452)
T PTZ00297 142 VPLAEGGSQRIVFFNVHLRQEDS-LPSTSSQVQETRRFVESVIANVYEQNNDGAEIPFVIAGDFNIN 207 (1452)
T ss_pred ccccCCCCceEEEEEeCCCCCCC-cchHHHHHHHHHHHHHHhhhhhcccccCCCCCCEEEEeeCCCc
Confidence 6421 22468999999998643 3569999999998887622211 11 11245699999999965
No 13
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.48 E-value=8e-13 Score=110.31 Aligned_cols=135 Identities=24% Similarity=0.212 Sum_probs=80.2
Q ss_pred HHHHH-HHHHhcCCCcEEEEeeecCCc-Ccc-cccccCCCcEEEEccCCCCeeeEEEEEecCCceeeeEeEEeccccccc
Q 047989 21 RSDAV-LTVLKSFGADFLCLQELDNED-FYK-GNMETEGYSSLYIQRSGQKRDGCGIFYKISCAELLVEDRIYYNELVNS 97 (223)
Q Consensus 21 R~~~i-~~~I~~~~pDIi~LQEv~~~~-~l~-~~L~~~gY~~~~~~~~~~~~~G~ai~~~~sr~~i~~~~~i~~~~~~~~ 97 (223)
+.+.+ +++|...+||||||||+.... .+. ..+...||..++......+..|+||++| +++..... .+....
T Consensus 14 ~~~~~~~~~l~~~~~DIv~LQE~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~ailsr---~~~~~~~~-~~~~~~-- 87 (255)
T TIGR00633 14 RLHKLFLDWLKEEQPDVLCLQETKVADEQFPAELFEELGYHVFFHGAKSKGYSGVAILSK---VEPLDVRY-GFGGEE-- 87 (255)
T ss_pred HhhccHHHHHHhcCCCEEEEEeccCchhhCCHhHhccCCceEEEeecccCCcceEEEEEc---CCcceEEE-CCCCCc--
Confidence 44566 899999999999999997643 222 2233568887665443346789999954 44443221 011000
Q ss_pred ccCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCcEEEEEEEeecCCCCcEEEEEeeeeecCCC
Q 047989 98 IKDGSSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVATTHLYWDPE 177 (223)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~~V~ntHL~~~~~ 177 (223)
. + ...| .+. ++. +. +.|+++|+.....
T Consensus 88 ----------------------------~---------~------~~~r---~l~--~~~----~~-~~i~~vy~p~~~~ 114 (255)
T TIGR00633 88 ----------------------------H---------D------EEGR---VIT--AEF----DG-FTVVNVYVPNGGS 114 (255)
T ss_pred ----------------------------c---------c------CCCc---EEE--EEE----CC-EEEEEEEccCCCC
Confidence 0 0 1113 122 222 23 6999999975432
Q ss_pred CC----chhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCCC
Q 047989 178 LA----DVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVPG 221 (223)
Q Consensus 178 ~~----~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p~ 221 (223)
.+ ..|..+...+.+.+.+... .+.|+|+|||||+.|.
T Consensus 115 ~~~~~~~~r~~~~~~l~~~~~~~~~-------~~~~~Il~GDFN~~~~ 155 (255)
T TIGR00633 115 RGLERLEYKLQFWDALFQYYEKELD-------AGKPVIICGDMNVAHT 155 (255)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHh-------cCCcEEEEeecccCCC
Confidence 22 2456666666665544321 3569999999999885
No 14
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=99.47 E-value=1.4e-12 Score=108.71 Aligned_cols=59 Identities=29% Similarity=0.479 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeeecCCc--CcccccccCCCcEEEEccCCCCeeeEEEEEec
Q 047989 19 KNRSDAVLTVLKSFGADFLCLQELDNED--FYKGNMETEGYSSLYIQRSGQKRDGCGIFYKI 78 (223)
Q Consensus 19 ~~R~~~i~~~I~~~~pDIi~LQEv~~~~--~l~~~L~~~gY~~~~~~~~~~~~~G~ai~~~~ 78 (223)
+.|.+.+.+++.+++||||||||+...+ +-...+...||+.++... .++..|+||++|.
T Consensus 12 Rar~~~~~~~l~~~~pDVlclQEtK~~~~~fp~~~~~~~GY~~~~~~g-qKgysGVailsr~ 72 (261)
T COG0708 12 RARLKKLLDWLEEEQPDVLCLQETKAQDEQFPREELEALGYHHVFNHG-QKGYSGVAILSKK 72 (261)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecccCcccCCHhHHhhCCceEEEecC-cCCcceEEEEEcc
Confidence 3577889999999999999999997644 334555567996555433 2789999999654
No 15
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=99.43 E-value=2.8e-12 Score=105.75 Aligned_cols=139 Identities=17% Similarity=0.150 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeeecCCc-CcccccccCCCcEEEEccCCCCeeeEEEEEecCCceeeeEeEEeccccccc
Q 047989 19 KNRSDAVLTVLKSFGADFLCLQELDNED-FYKGNMETEGYSSLYIQRSGQKRDGCGIFYKISCAELLVEDRIYYNELVNS 97 (223)
Q Consensus 19 ~~R~~~i~~~I~~~~pDIi~LQEv~~~~-~l~~~L~~~gY~~~~~~~~~~~~~G~ai~~~~sr~~i~~~~~i~~~~~~~~ 97 (223)
..|++.++.+|+.++|||||||||.... .....+. .|..++... .....+-+++. .+++.+-+...+.|.++
T Consensus 116 ~~RMrAv~H~i~l~sPdiiflQEV~p~~y~~~~K~~--s~y~i~~~~-~~~~~~~~~l~-~s~~~Vks~~~i~F~NS--- 188 (349)
T KOG2756|consen 116 SERMRAVCHYLALYSPDVIFLQEVIPPYYSYLKKRS--SNYEIITGH-EEGYFTAIMLK-KSRVKVKSQEIIPFPNS--- 188 (349)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeecCchhhHHHHHhh--hheeEEEec-cceeeeeeeee-hhhcCccccceeccCcc---
Confidence 4799999999999999999999998744 2222333 244433322 12445555544 47888887777777543
Q ss_pred ccCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCcEEEEEEEeecCCCCcEEEEEeeeeecCCC
Q 047989 98 IKDGSSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVATTHLYWDPE 177 (223)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~~V~ntHL~~~~~ 177 (223)
.+.|+ .+++.+.. +| ..++++|+||...-.
T Consensus 189 ---------------------------------------------~M~R~--L~I~Ev~v--~G-~Kl~l~tsHLEStr~ 218 (349)
T KOG2756|consen 189 ---------------------------------------------KMMRN--LLIVEVNV--SG-NKLCLMTSHLESTRG 218 (349)
T ss_pred ---------------------------------------------hhhhe--eEEEEEee--cC-ceEEEEeccccCCCC
Confidence 23463 34554444 45 448999999997655
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCC
Q 047989 178 LADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSV 219 (223)
Q Consensus 178 ~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~ 219 (223)
....|.+|-...++.+++..+.+ ++..||++||+|.-
T Consensus 219 h~P~r~~qF~~~~~k~~EaIe~l-----PnA~ViFGGD~Nlr 255 (349)
T KOG2756|consen 219 HAPERMNQFKMVLKKMQEAIESL-----PNATVIFGGDTNLR 255 (349)
T ss_pred CChHHHHHHHHHHHHHHHHHHhC-----CCceEEEcCcccch
Confidence 56789999999999988876642 56789999999963
No 16
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=99.42 E-value=3e-13 Score=115.48 Aligned_cols=151 Identities=26% Similarity=0.291 Sum_probs=103.2
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEeeecCCc---Ccccccc-cCCCcEEEEccCCCCeeeEEEEEecCCceeeeEeEEeccc
Q 047989 18 WKNRSDAVLTVLKSFGADFLCLQELDNED---FYKGNME-TEGYSSLYIQRSGQKRDGCGIFYKISCAELLVEDRIYYNE 93 (223)
Q Consensus 18 w~~R~~~i~~~I~~~~pDIi~LQEv~~~~---~l~~~L~-~~gY~~~~~~~~~~~~~G~ai~~~~sr~~i~~~~~i~~~~ 93 (223)
...|+..+.+++.+..-||+.||||+..+ .+.+..+ ...|..+|. .|-.+.|+++| ||+||++.-.-.++-
T Consensus 26 R~~Rm~~~g~~l~~E~yDiv~LQEvWs~eD~~~L~~~~ss~yPysh~FH--SGimGaGL~vf---SK~PI~~t~~~~y~l 100 (422)
T KOG3873|consen 26 RRHRMDAIGDELASEKYDIVSLQEVWSQEDFEYLQSGCSSVYPYSHYFH--SGIMGAGLCVF---SKHPILETLFHRYSL 100 (422)
T ss_pred hHHHHHHHhHHHhhcccchhhHHHHHHHHHHHHHHHhccccCchHHhhh--cccccCceEEe---ecCchhhhhhhcccc
Confidence 35678899999999999999999998754 4445444 344554443 24468899999 899999876555542
Q ss_pred ccccccCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCcEEEEEEEeecCCCCcEEEEEeeeee
Q 047989 94 LVNSIKDGSSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVATTHLY 173 (223)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~~V~ntHL~ 173 (223)
.+ +| +....+.|..+ + -|+ .++|.. ++.++.++||||+
T Consensus 101 NG--~p-------------------~~i~rGDWf~G----------------K-~Vg-l~~l~~---~g~~v~~yntHLH 138 (422)
T KOG3873|consen 101 NG--YP-------------------HAIHRGDWFGG----------------K-GVG-LTVLLV---GGRMVNLYNTHLH 138 (422)
T ss_pred CC--cc-------------------ceeeecccccc----------------c-eeE-EEEEee---CCEEeeeeehhcc
Confidence 11 00 11334455421 1 133 444444 3488999999998
Q ss_pred cCCC-CC----chhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCCCC
Q 047989 174 WDPE-LA----DVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVPGD 222 (223)
Q Consensus 174 ~~~~-~~----~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p~s 222 (223)
..-+ .+ --|..||-.+.+.|+...+ ...-||+|||||..|.|
T Consensus 139 AeY~rq~D~YL~HR~~QAwdlaqfi~~t~q-------~~~vVI~~GDLN~~P~d 185 (422)
T KOG3873|consen 139 AEYDRQNDEYLCHRVAQAWDLAQFIRATRQ-------NADVVILAGDLNMQPQD 185 (422)
T ss_pred ccccccCchhhhHHHHHHHHHHHHHHHHhc-------CCcEEEEecCCCCCccc
Confidence 5311 11 3599999999999988753 35679999999999987
No 17
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=99.34 E-value=4.2e-11 Score=100.43 Aligned_cols=58 Identities=21% Similarity=0.300 Sum_probs=41.1
Q ss_pred HHH-HHHHHHHhcCCCcEEEEeeecCCc-CcccccccCCCcEEEEccCCCCeeeEEEEEecC
Q 047989 20 NRS-DAVLTVLKSFGADFLCLQELDNED-FYKGNMETEGYSSLYIQRSGQKRDGCGIFYKIS 79 (223)
Q Consensus 20 ~R~-~~i~~~I~~~~pDIi~LQEv~~~~-~l~~~L~~~gY~~~~~~~~~~~~~G~ai~~~~s 79 (223)
.|. +.+.++|..++||||||||+.... .+. +...||..++.....++..|+||++|..
T Consensus 13 ~~~~~~~~~~l~~~~~DIiclQEtK~~~~~~~--~~~~gY~~~~~~~~~kgy~GVAi~~k~~ 72 (250)
T PRK13911 13 ACMTKGFMDFFNSVDADVFCIQESKMQQEQNT--FEFKGYFDFWNCAIKKGYSGVVTFTKKE 72 (250)
T ss_pred HhhhhhHHHHHHhcCCCEEEEEeecccccccc--cccCCceEEEEecccCccceEEEEEcCC
Confidence 344 358899999999999999997543 321 3345897665433346788999998753
No 18
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=99.24 E-value=2.2e-10 Score=96.05 Aligned_cols=48 Identities=17% Similarity=0.165 Sum_probs=38.5
Q ss_pred EEEEeeeeecCCCCCchhHHHHHHHHHHHH-HHHHHhccCCCCCCcEEEeccCCCCCCCC
Q 047989 165 VIVATTHLYWDPELADVKLAQAKYLSSRLA-EFRTQVSDRYDCVPSVIVAGDFNSVPGDK 223 (223)
Q Consensus 165 ~~V~ntHL~~~~~~~~~R~~Q~~~l~~~l~-~~~~~~~~~~~~~~pvIl~GDFN~~p~s~ 223 (223)
+.+++||+.+.. +..|.+|++.+.+... .. +..|.+||||||..|+|.
T Consensus 152 ~~ffstH~~a~~--~~da~aiV~~I~~~f~~~~---------~~~pw~I~GDFNr~P~sl 200 (271)
T PRK15251 152 DVFFSIHALANG--GTDAGAIVRAVHNFFRPNM---------RHINWMIAGDFNRSPDRL 200 (271)
T ss_pred eEEEEeeecCCC--CccHHHHHHHHHHHHhhcc---------CCCCEEEeccCCCCCcch
Confidence 599999999763 4558899998888876 32 347999999999999873
No 19
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.76 E-value=2.2e-08 Score=85.13 Aligned_cols=134 Identities=22% Similarity=0.252 Sum_probs=79.4
Q ss_pred HHHHHHHhcCCCcEEEEeeecCCc-CcccccccCCCcEEEEccCCCCeeeEEEEEecCCceeeeEeEEecccccccccCC
Q 047989 23 DAVLTVLKSFGADFLCLQELDNED-FYKGNMETEGYSSLYIQRSGQKRDGCGIFYKISCAELLVEDRIYYNELVNSIKDG 101 (223)
Q Consensus 23 ~~i~~~I~~~~pDIi~LQEv~~~~-~l~~~L~~~gY~~~~~~~~~~~~~G~ai~~~~sr~~i~~~~~i~~~~~~~~~~~~ 101 (223)
..++..|...++|++-+||....+ .....++. .|.+......+.+..+.++++++.. + .+..
T Consensus 104 ~k~Lsl~~~~~~D~v~~~E~~~~~~~~~~~l~~-~yP~~~~~~~~~~~~~~a~~sr~~~--~------~~~~-------- 166 (309)
T COG3021 104 AKLLSLIQQLDADAVTTPEGVQLWTAKVGALAA-QYPAFILCQHPTGVFTLAILSRRPC--C------PLTE-------- 166 (309)
T ss_pred HHHHHHHhhhCcchhhhHHHHHHhHhHHHHHHH-hCCceeecCCCCCeeeeeecccccc--c------cccc--------
Confidence 457777778889999999997754 22223432 5664332222336777778754321 1 1110
Q ss_pred CCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCcEEEEEEEeecCCCCcEEEEEeeeeecCCCCCch
Q 047989 102 SSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVATTHLYWDPELADV 181 (223)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~~V~ntHL~~~~~~~~~ 181 (223)
-..|- ..++...+ .+..- ..++.+.|++.|..-.|-+.+.
T Consensus 167 ---------------------~e~~~---------------~~pk~~~~-t~~~~---~~g~~l~v~~lh~~~~~~~~~~ 206 (309)
T COG3021 167 ---------------------AEPWL---------------RLPKSALA-TAYPL---PDGTELTVVALHAVNFPVGTDP 206 (309)
T ss_pred ---------------------cCccc---------------cCCcccee-EEEEc---CCCCEEEEEeeccccccCCccH
Confidence 00121 22232222 22222 2246689999999844444455
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCCCCC
Q 047989 182 KLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVPGDK 223 (223)
Q Consensus 182 R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p~s~ 223 (223)
..+|...+.+.+..+ +.|+|++||||+.|+|.
T Consensus 207 ~~~ql~~l~~~i~~~----------~gpvIlaGDfNa~pWS~ 238 (309)
T COG3021 207 QRAQLLELGDQIAGH----------SGPVILAGDFNAPPWSR 238 (309)
T ss_pred HHHHHHHHHHHHHcC----------CCCeEEeecCCCcchhH
Confidence 558888877777765 46999999999999873
No 20
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=98.26 E-value=9.1e-06 Score=70.35 Aligned_cols=68 Identities=16% Similarity=0.040 Sum_probs=44.1
Q ss_pred EEEEEEEeecCCCCcEEEEEeeeeecCCCCCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCC
Q 047989 149 VGIMAAFRLKGPFDHVVIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVP 220 (223)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~V~ntHL~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p 220 (223)
.++.+.++.. +..+.++|+||..+...-+.|..|...|+..+.--.... ........+|++||||-.-
T Consensus 127 G~v~i~~~~~---~~~~~fv~~HL~a~~~~~~~R~~~~~~I~~~~~f~~~~~-~~~~~~d~~f~~GDlNyRi 194 (310)
T smart00128 127 GAVAVRFKLS---DTSFCFVNSHLAAGASNVEQRNQDYKTILRALSFPERAE-LSQFDHDVVFWFGDLNFRL 194 (310)
T ss_pred ceEEEEEEEc---CcEEEEEeeccccccchhhhhHHHHHHHHHhcCCCCCcc-ccccccceEEEecCcceee
Confidence 3566677764 245899999999876555678889988876553100000 0001356899999999753
No 21
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=98.25 E-value=3.9e-06 Score=78.38 Aligned_cols=157 Identities=20% Similarity=0.277 Sum_probs=98.8
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEeeecCCc----------Cc----ccccccC-CCcEEEEccC---CCCeeeEEEEEecC
Q 047989 18 WKNRSDAVLTVLKSFGADFLCLQELDNED----------FY----KGNMETE-GYSSLYIQRS---GQKRDGCGIFYKIS 79 (223)
Q Consensus 18 w~~R~~~i~~~I~~~~pDIi~LQEv~~~~----------~l----~~~L~~~-gY~~~~~~~~---~~~~~G~ai~~~~s 79 (223)
....+.++...|...++||++|=|++... .+ ...+..- .|.++...+. +....+++++|+.+
T Consensus 500 ~~~Q~~k~v~ai~~ldaDV~GL~Eien~~~~~~s~~ai~~lV~~lna~~G~~~~y~~v~p~~~~~lgtD~I~vg~iY~~~ 579 (798)
T COG2374 500 FARQRAKIVTAILTLDADVLGLMEIENNGYGTDSGDAIAQLVNALNAKAGAGTRYAFVAPGRNGGLGTDAIRVGFIYKPS 579 (798)
T ss_pred HHHHHHHHHHHHhhcchhhheeeeeeccCCCCCcHHHHHHHHHHHHhhcCCCceEEEEecCccCCcCCCceeEEEEeccc
Confidence 34456688999999999999999998621 12 2223222 3555554332 34667899999999
Q ss_pred CceeeeEeEEecccccccccCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCcEEEEEEEeecC
Q 047989 80 CAELLVEDRIYYNELVNSIKDGSSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKG 159 (223)
Q Consensus 80 r~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~~~~~~~l~~~~ 159 (223)
+..++....+.-.+.... + .. .++ ...|.. +...++...
T Consensus 580 ~V~~~g~~~~~~~~a~~~-----------------------v-----~~-----~~~------~n~R~~--laqtF~~~~ 618 (798)
T COG2374 580 AVSLVGKAAIVDNDAFLG-----------------------V-----GE-----IDD------NNARPP--LAQTFQDLS 618 (798)
T ss_pred eEEecccccccccccccc-----------------------c-----cc-----ccc------cccCcc--hhhhhhhcc
Confidence 888887766532211000 0 00 000 112322 445666666
Q ss_pred CCCcEEEEEeeeeecC----CC----------CCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCCC
Q 047989 160 PFDHVVIVATTHLYWD----PE----------LADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVPG 221 (223)
Q Consensus 160 ~~~~~~~V~ntHL~~~----~~----------~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p~ 221 (223)
++.+ |.|+.-||... |- ....|.+||.+|..+++..... ..+.|++|.||||+--.
T Consensus 619 ~~ek-fvvVvNHfkSKgs~~p~~gd~~dgQg~~~~~R~~~AqaL~~~la~~~~~-----~~d~~~viLGD~N~y~~ 688 (798)
T COG2374 619 GGEK-FVVVVNHFKSKGSDCPVDGDTQDGQGNSNQTRVRAAQALAAFLATNPTG-----KADADIVILGDFNDYAF 688 (798)
T ss_pred CCcE-EEEEEeeecccCCCCCCcccccccccchhhHHHHHHHHHHHHHhhCccc-----ccCCCEEEEeccchhhh
Confidence 6655 78999999854 20 1257999999999999974321 13679999999998654
No 22
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=97.18 E-value=0.00042 Score=60.11 Aligned_cols=70 Identities=26% Similarity=0.319 Sum_probs=51.7
Q ss_pred CcEEEEEEEeecCCCCc-EEEEEeeeeecCCCCCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCCCCC
Q 047989 147 DCVGIMAAFRLKGPFDH-VVIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVPGDK 223 (223)
Q Consensus 147 ~~~~~~~~l~~~~~~~~-~~~V~ntHL~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p~s~ 223 (223)
+..+....++.-...+. -+++.+||+.|+|.+...|.+|...+++++.+... ...+.+||||||.+|+++
T Consensus 121 ~~dGc~if~k~~~~~sk~~li~~~~~~f~~p~~~~er~r~t~~~lnri~e~~~-------~~w~~l~~~l~n~e~gd~ 191 (378)
T COG5239 121 KVDGCAIFLKRFIDSSKLGLILAVTHLFWHPYGYYERFRQTYILLNRIGEKDN-------IAWVCLFVGLFNKEPGDT 191 (378)
T ss_pred ccceEEEEEEeccccchhhhhhhhhHhhcccceeehhhhHHHHHHHHHhhhhh-------cchhheeeeeccCCCCCc
Confidence 33445555554211112 36899999999999999999999999999987632 236789999999999874
No 23
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.0038 Score=60.17 Aligned_cols=64 Identities=16% Similarity=0.162 Sum_probs=37.2
Q ss_pred EEEEEEeecCCCCcEEEEEeeeeecCCCCCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCC
Q 047989 150 GIMAAFRLKGPFDHVVIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSV 219 (223)
Q Consensus 150 ~~~~~l~~~~~~~~~~~V~ntHL~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~ 219 (223)
|+..++....| . ||++++||...-+.-++|-.-=..|.+.|. +. .+........||.|||||..
T Consensus 663 AVAIrf~~~~T--s-fCFv~SHlAAG~snv~ERn~DY~tI~r~l~-Fp--~Gr~I~~HD~ifW~GDFNYR 726 (1080)
T KOG0566|consen 663 AVAIRFVYHAT--S-FCFVCSHLAAGQSNVEERNEDYKTIARKLR-FP--RGRMIFSHDYIFWLGDFNYR 726 (1080)
T ss_pred eEEEEEEeccc--c-EEEEecccccccchHhhhhhhHHHHHHhcc-cc--CCccccCCceEEEeccccee
Confidence 44555555443 3 799999998764333444444444443332 10 11233456789999999974
No 24
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=96.20 E-value=0.022 Score=48.46 Aligned_cols=61 Identities=23% Similarity=0.261 Sum_probs=37.3
Q ss_pred EEEEEEeecCCCCcEEEEEeeeeecCCCC-----------CchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCC
Q 047989 150 GIMAAFRLKGPFDHVVIVATTHLYWDPEL-----------ADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNS 218 (223)
Q Consensus 150 ~~~~~l~~~~~~~~~~~V~ntHL~~~~~~-----------~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~ 218 (223)
++...++.. +..|.++|+||+++... ...|..-...+++.+... +.+..|+|+.||||.
T Consensus 70 fmrtrw~i~---~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~~~-------~~~~~~lF~fGDfNy 139 (356)
T PTZ00312 70 FLLLSLRLG---TVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECSAF-------ISPSDPLFIFGDFNV 139 (356)
T ss_pred eEEEEEEEC---CEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHhhc-------cCCCCcEEEecccee
Confidence 344555553 35689999999977421 123444444444443332 225679999999997
Q ss_pred CC
Q 047989 219 VP 220 (223)
Q Consensus 219 ~p 220 (223)
.-
T Consensus 140 Rl 141 (356)
T PTZ00312 140 RL 141 (356)
T ss_pred ee
Confidence 43
No 25
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=95.23 E-value=0.031 Score=47.68 Aligned_cols=63 Identities=21% Similarity=0.232 Sum_probs=45.3
Q ss_pred EEEEEEeecCCCCcEEEEEeeeeecCC-----------CCCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCC
Q 047989 150 GIMAAFRLKGPFDHVVIVATTHLYWDP-----------ELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNS 218 (223)
Q Consensus 150 ~~~~~l~~~~~~~~~~~V~ntHL~~~~-----------~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~ 218 (223)
.+.+++++. + ..|-++|.||+.+. ..+..|.+|+.+++++|..- .. ....+++.||||.
T Consensus 159 ~~~~r~~I~--~-k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~~------~~-~~~~~fVfGdfNf 228 (391)
T KOG1976|consen 159 FLLARFRIH--G-KEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDEE------GL-RNDAIFVFGDFNF 228 (391)
T ss_pred ccceeEEEc--C-ceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHHhh------cc-CceEEEEeccccc
Confidence 456677765 3 45799999998542 13467889999988887653 22 2358999999999
Q ss_pred CCCC
Q 047989 219 VPGD 222 (223)
Q Consensus 219 ~p~s 222 (223)
.-+|
T Consensus 229 rLds 232 (391)
T KOG1976|consen 229 RLDS 232 (391)
T ss_pred ccch
Confidence 8765
No 26
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=94.23 E-value=0.11 Score=48.50 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=32.8
Q ss_pred cEEEEEeeeeecCCCCC--chhHHHHHHHHHHHHHHHHHhc----cCCCCCCcEEEeccCCCC
Q 047989 163 HVVIVATTHLYWDPELA--DVKLAQAKYLSSRLAEFRTQVS----DRYDCVPSVIVAGDFNSV 219 (223)
Q Consensus 163 ~~~~V~ntHL~~~~~~~--~~R~~Q~~~l~~~l~~~~~~~~----~~~~~~~pvIl~GDFN~~ 219 (223)
..|+++|+||.++.... ..|..+...|+..+. +..... .......-+|++||||..
T Consensus 420 Ts~cFVn~HLAAg~~~~~~~rRN~D~~~I~~~l~-F~~~~~~~~~~~I~dhD~vFWlGDLNYR 481 (621)
T PLN03191 420 SRLCFVCSHLTSGHKDGAEQRRNADVYEIIRRTR-FSSVLDTDQPQTIPSHDQIFWFGDLNYR 481 (621)
T ss_pred cEEEEEEeccccccccchHHHHHHHHHHHHhccc-cCcccccCCCccccccceEEEecCcccc
Confidence 45799999999764322 236677777665431 100000 011124579999999974
No 27
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=93.96 E-value=0.075 Score=38.42 Aligned_cols=11 Identities=45% Similarity=0.978 Sum_probs=6.9
Q ss_pred cEEEeccCCCC
Q 047989 209 SVIVAGDFNSV 219 (223)
Q Consensus 209 pvIl~GDFN~~ 219 (223)
++||+||||..
T Consensus 32 ~~Ii~GDFN~~ 42 (119)
T PF14529_consen 32 PIIIGGDFNAH 42 (119)
T ss_dssp SEEEEEE----
T ss_pred CEEEEeECCCC
Confidence 89999999983
No 28
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=80.71 E-value=1.7 Score=38.37 Aligned_cols=48 Identities=23% Similarity=0.292 Sum_probs=35.3
Q ss_pred EEEeeeeecCCCCCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCCCC
Q 047989 166 IVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVPGD 222 (223)
Q Consensus 166 ~V~ntHL~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p~s 222 (223)
.|.--|-+.+..++.+| .|...++..++ ++++..-||..||||.+|.+
T Consensus 45 tvgfFHPYCNAGGGGEr-----VLW~Avr~~q~----k~~n~~~viYsGD~n~t~~~ 92 (465)
T KOG1387|consen 45 TVGFFHPYCNAGGGGER-----VLWKAVRITQR----KFPNNVIVIYSGDFNVTPEN 92 (465)
T ss_pred EEEEecccccCCCCcce-----ehhHHHHHHHH----hCCCceEEEEeCCCCCCHHH
Confidence 66777888877777777 56666666543 34567889999999999863
No 29
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=80.62 E-value=1.4 Score=39.74 Aligned_cols=52 Identities=15% Similarity=0.122 Sum_probs=34.3
Q ss_pred EEEEeeeeecCCCCCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCC
Q 047989 165 VIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSV 219 (223)
Q Consensus 165 ~~V~ntHL~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~ 219 (223)
++++|+||..+-...+.|..-.+.+++.|.--. +.+......++++||||..
T Consensus 167 ~cFv~shlaag~~N~eeR~~Dy~~I~~~i~f~~---g~~I~~hdti~w~GDlNyR 218 (460)
T COG5411 167 FCFVNSHLAAGVNNIEERIFDYRSIASNICFSR---GLRIYDHDTIFWLGDLNYR 218 (460)
T ss_pred cEEEecchhcccccHHHHHHHHHHHHHheecCC---CceecccceEEEecccCce
Confidence 699999998775555667666666665554210 0122344679999999964
No 30
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=65.30 E-value=25 Score=30.21 Aligned_cols=14 Identities=36% Similarity=0.458 Sum_probs=11.8
Q ss_pred CCcEEEeccCCCCC
Q 047989 207 VPSVIVAGDFNSVP 220 (223)
Q Consensus 207 ~~pvIl~GDFN~~p 220 (223)
..-.|+||+|.+.|
T Consensus 64 P~~fVL~GnF~S~p 77 (291)
T PTZ00235 64 PVGFIFMGDFISLK 77 (291)
T ss_pred CeEEEEecCccCCc
Confidence 34589999999998
No 31
>KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.59 E-value=13 Score=28.03 Aligned_cols=15 Identities=33% Similarity=0.353 Sum_probs=11.5
Q ss_pred CcEEEeccCCCCCCC
Q 047989 208 PSVIVAGDFNSVPGD 222 (223)
Q Consensus 208 ~pvIl~GDFN~~p~s 222 (223)
.-||..||+|....+
T Consensus 109 D~v~w~GDlN~Rl~~ 123 (145)
T KOG0565|consen 109 DTVIWLGDLNYRLSG 123 (145)
T ss_pred cEEEEecceeeeecC
Confidence 348999999986553
No 32
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=58.39 E-value=10 Score=32.12 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhcCCCcEEEEeeecC
Q 047989 20 NRSDAVLTVLKSFGADFLCLQELDN 44 (223)
Q Consensus 20 ~R~~~i~~~I~~~~pDIi~LQEv~~ 44 (223)
.|.+.|++.-.--...||||||.+.
T Consensus 100 ~r~kaiieaaa~agvniiclqeawt 124 (387)
T KOG0808|consen 100 DRLKAIIEAAAVAGVNIICLQEAWT 124 (387)
T ss_pred HHHHHHHHHHHhcCccEEEeehhhc
Confidence 4566777777778999999999875
No 33
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=51.71 E-value=16 Score=28.39 Aligned_cols=48 Identities=21% Similarity=0.193 Sum_probs=26.8
Q ss_pred EEEeeeeecCC----CCCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCC
Q 047989 166 IVATTHLYWDP----ELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNS 218 (223)
Q Consensus 166 ~V~ntHL~~~~----~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~ 218 (223)
+|.-+||.... .+......|.+.+++.+.++.+.. +..-+|++||+=.
T Consensus 2 ~isDlHlG~~~~~~~~g~~~p~~~~~~~~~~l~~~~~~~-----~~d~lii~GDl~~ 53 (172)
T cd07391 2 VVADLHLGKEEELRRRGILLPRGQTEDTLERLDRLIEEY-----GPERLIILGDLKH 53 (172)
T ss_pred EeEeeccchHHHHHhcCCcCCcccHHHHHHHHHHHHHhc-----CCCEEEEeCcccc
Confidence 56678887542 122334444445555555554321 2356999999753
No 34
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=51.51 E-value=19 Score=27.70 Aligned_cols=48 Identities=21% Similarity=0.043 Sum_probs=24.4
Q ss_pred EEEeeeeecCCCCCc-hhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCC
Q 047989 166 IVATTHLYWDPELAD-VKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNS 218 (223)
Q Consensus 166 ~V~ntHL~~~~~~~~-~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~ 218 (223)
+|.-+||.....+.. .|..+-..+.+.+++..+.. ...-+|++||+=.
T Consensus 2 ~isD~HL~~~~~~~~l~~~~~~~~~~~~~~~~i~~~-----~pd~vv~~GDl~~ 50 (156)
T cd08165 2 FLADTHLLGSILGHWLDKLRREWQMERSFQTSLWLL-----QPDVVFVLGDLFD 50 (156)
T ss_pred ccccchhcCCcccHHHHHHhhhHHHHHHHHHHHHhc-----CCCEEEECCCCCC
Confidence 677889854321111 23333334443444433221 2346999999854
No 35
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=40.53 E-value=67 Score=28.27 Aligned_cols=57 Identities=19% Similarity=0.165 Sum_probs=28.4
Q ss_pred EEEEEeeeeecCCCCCchhHHHH--HHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCCC
Q 047989 164 VVIVATTHLYWDPELADVKLAQA--KYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVPG 221 (223)
Q Consensus 164 ~~~V~ntHL~~~~~~~~~R~~Q~--~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p~ 221 (223)
.+..+|+|+.-. .+..+.+.-- ...-..++...+..+..-....|++.|||.|..+.
T Consensus 168 ~~~l~~~y~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~v~~gd~nvs~~ 226 (335)
T KOG1294|consen 168 IFILINTYVPNI-GGGLVNLVYRILDRWDKEIEEKRKKQSSSKNLKAPVVICGDLNVSHE 226 (335)
T ss_pred ceeeccccCccc-ccccchhhhhhhhhhHHHHHHHhhhccccccccCcceeccccccchh
Confidence 358899998632 1222222211 22222333333322211112358999999998764
No 36
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=37.30 E-value=42 Score=27.98 Aligned_cols=51 Identities=22% Similarity=0.343 Sum_probs=31.0
Q ss_pred cEEEEEeeeeecCCCC----CchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCC
Q 047989 163 HVVIVATTHLYWDPEL----ADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNS 218 (223)
Q Consensus 163 ~~~~V~ntHL~~~~~~----~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~ 218 (223)
..++|+-+||.+.... -.+=..|-..+...+.++.+.. ...-+|+.||+=.
T Consensus 21 ~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~-----~p~~lIilGD~KH 75 (235)
T COG1407 21 RTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERY-----GPKRLIILGDLKH 75 (235)
T ss_pred cEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhc-----CCCEEEEcCcccc
Confidence 5689999999975321 1111235555666666554432 3456999999843
No 37
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=35.57 E-value=80 Score=25.91 Aligned_cols=51 Identities=18% Similarity=0.244 Sum_probs=30.9
Q ss_pred cEEEEEeeeeecCC----CCCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCC
Q 047989 163 HVVIVATTHLYWDP----ELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNS 218 (223)
Q Consensus 163 ~~~~V~ntHL~~~~----~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~ 218 (223)
..++|.-+||.... .+...-..|...+++.+.+..+.. ...-+|++||+-.
T Consensus 16 ~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~-----~~d~vIi~GDl~h 70 (225)
T TIGR00024 16 DKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKY-----GIEALIINGDLKH 70 (225)
T ss_pred CeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhc-----CCCEEEEcCcccc
Confidence 45788889998532 122233346666666776654321 2346999999753
No 38
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]
Probab=35.47 E-value=36 Score=27.44 Aligned_cols=20 Identities=30% Similarity=0.674 Sum_probs=17.7
Q ss_pred HHHHHHHhcCCCcEEEEeee
Q 047989 23 DAVLTVLKSFGADFLCLQEL 42 (223)
Q Consensus 23 ~~i~~~I~~~~pDIi~LQEv 42 (223)
..++++|.+..+|+|||--.
T Consensus 77 ~eL~~~l~e~~~d~v~lAG~ 96 (206)
T KOG3076|consen 77 NELAEVLLELGTDLVCLAGY 96 (206)
T ss_pred HHHHHHHHHhCCCEEEehhh
Confidence 67999999999999998654
No 39
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=32.36 E-value=42 Score=25.90 Aligned_cols=12 Identities=33% Similarity=0.384 Sum_probs=9.5
Q ss_pred CCcEEEeccCCC
Q 047989 207 VPSVIVAGDFNS 218 (223)
Q Consensus 207 ~~pvIl~GDFN~ 218 (223)
..-+|++||+=.
T Consensus 43 ~d~vi~~GDl~~ 54 (168)
T cd07390 43 DDTVYHLGDFSF 54 (168)
T ss_pred CCEEEEeCCCCC
Confidence 457999999854
No 40
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=25.80 E-value=3.6e+02 Score=23.47 Aligned_cols=34 Identities=12% Similarity=-0.121 Sum_probs=23.2
Q ss_pred CCCCcEEEEEeeeeecCCCCCchhHHHHHHHHHHHHHHHHH
Q 047989 159 GPFDHVVIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQ 199 (223)
Q Consensus 159 ~~~~~~~~V~ntHL~~~~~~~~~R~~Q~~~l~~~l~~~~~~ 199 (223)
..|++++.++|+=-. + -..||+.+++.+++-...
T Consensus 89 amGG~Pv~~vd~isa-~------s~d~~~ei~eglr~~a~k 122 (324)
T COG2144 89 AMGGEPVGAVDAISA-K------SEDQAREILEGLRKGARK 122 (324)
T ss_pred hhCCcceEEEEeeec-C------CHHHHHHHHHHHHHHHHh
Confidence 457787677776432 1 247899999999886655
No 41
>smart00216 VWD von Willebrand factor (vWF) type D domain. Von Willebrand factor contains several type D domains: D1 and D2 are present within the N-terminal propeptide whereas the remaining D domains are required for multimerisation.
Probab=25.65 E-value=34 Score=26.02 Aligned_cols=14 Identities=29% Similarity=0.650 Sum_probs=11.4
Q ss_pred cEEEeccCCCCCCC
Q 047989 209 SVIVAGDFNSVPGD 222 (223)
Q Consensus 209 pvIl~GDFN~~p~s 222 (223)
--=|||+||.+|.+
T Consensus 142 ~~GLCGn~ng~~~d 155 (162)
T smart00216 142 TCGLCGNFDGEPED 155 (162)
T ss_pred eeEccCCCCCCccc
Confidence 34589999999875
No 42
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=24.30 E-value=1.5e+02 Score=20.61 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCcEEEec
Q 047989 183 LAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAG 214 (223)
Q Consensus 183 ~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~G 214 (223)
..++..++.++..+.+. ....|+|++|
T Consensus 89 ~~~~~~~~~~l~~~~~~-----~~~~piilv~ 115 (119)
T PF08477_consen 89 LEYLSQLLKWLKNIRKR-----DKNIPIILVG 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHH-----SSCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHcc-----CCCCCEEEEE
Confidence 45666677788777542 2458999987
No 43
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=22.59 E-value=1.4e+02 Score=21.83 Aligned_cols=13 Identities=23% Similarity=0.452 Sum_probs=9.9
Q ss_pred CCcEEEeccCCCC
Q 047989 207 VPSVIVAGDFNSV 219 (223)
Q Consensus 207 ~~pvIl~GDFN~~ 219 (223)
..-||++||+=..
T Consensus 36 ~d~vi~~GDl~~~ 48 (144)
T cd07400 36 PDLVVITGDLTQR 48 (144)
T ss_pred CCEEEECCCCCCC
Confidence 4569999998554
No 44
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=21.99 E-value=1.5e+02 Score=24.79 Aligned_cols=42 Identities=14% Similarity=0.117 Sum_probs=22.9
Q ss_pred cEEEEEeeeeecCCCCCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCC
Q 047989 163 HVVIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNS 218 (223)
Q Consensus 163 ~~~~V~ntHL~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~ 218 (223)
+++.+.-.|+. +.. ...+++.+++.+.+. +..-|+++||+=.
T Consensus 51 rI~~lSDlH~~--~~~---~~~~l~~~v~~i~~~---------~pDlVli~GD~~d 92 (271)
T PRK11340 51 KILFLADLHYS--RFV---PLSLISDAIALGIEQ---------KPDLILLGGDYVL 92 (271)
T ss_pred EEEEEcccCCC--CcC---CHHHHHHHHHHHHhc---------CCCEEEEccCcCC
Confidence 45566667764 211 223444455544432 3456999999844
Done!