Query 047989
Match_columns 223
No_of_seqs 151 out of 1599
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 08:36:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047989.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047989hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ngq_A CCR4-NOT transcription 100.0 8.3E-36 2.8E-40 263.3 10.9 189 1-223 43-261 (398)
2 4b8c_D Glucose-repressible alc 100.0 1.9E-31 6.7E-36 251.9 1.7 190 1-223 406-611 (727)
3 3l1w_A Uncharacterized protein 99.9 7.7E-24 2.6E-28 174.9 15.8 155 14-222 16-173 (257)
4 3mpr_A Putative endonuclease/e 99.9 5.5E-24 1.9E-28 180.4 14.1 157 15-222 25-185 (298)
5 3g6s_A Putative endonuclease/e 99.9 7.8E-24 2.7E-28 176.0 14.2 157 14-222 19-179 (267)
6 4fva_A 5'-tyrosyl-DNA phosphod 99.8 8.9E-20 3E-24 149.0 16.0 144 16-222 27-172 (256)
7 4gew_A 5'-tyrosyl-DNA phosphod 99.8 5.1E-20 1.7E-24 160.8 15.2 144 16-222 133-278 (362)
8 4gz1_A Tyrosyl-DNA phosphodies 99.8 2E-20 6.8E-25 152.7 11.7 140 16-221 23-164 (256)
9 4f1h_A Tyrosyl-DNA phosphodies 99.8 2E-20 7E-25 150.7 11.3 140 16-221 17-158 (250)
10 3teb_A Endonuclease/exonucleas 99.8 6.7E-20 2.3E-24 151.3 12.6 143 16-220 17-181 (266)
11 1zwx_A SMCL, sphingomyelinase- 99.8 1.9E-19 6.5E-24 151.8 10.0 149 17-222 28-202 (301)
12 3i41_A Beta-hemolysin; beta to 99.8 8.2E-19 2.8E-23 150.2 13.9 150 16-222 48-221 (317)
13 1ako_A Exonuclease III; AP-end 99.8 4.8E-18 1.7E-22 140.2 11.9 141 18-222 11-158 (268)
14 2ddr_A Sphingomyelin phosphodi 99.7 8.3E-18 2.8E-22 141.8 11.6 145 19-220 31-200 (306)
15 2jc4_A Exodeoxyribonuclease II 99.7 1.4E-16 4.8E-21 130.6 15.5 138 17-222 10-153 (256)
16 2a40_B Deoxyribonuclease-1; WA 99.7 5.8E-16 2E-20 128.4 13.8 144 23-221 19-174 (260)
17 2jc5_A Exodeoxyribonuclease; h 99.7 7.4E-16 2.5E-20 126.4 13.0 132 24-222 19-156 (259)
18 1vyb_A ORF2 contains A reverse 99.7 2.6E-15 8.9E-20 121.5 14.8 60 19-79 21-81 (238)
19 2o3h_A DNA-(apurinic or apyrim 99.6 1.1E-14 3.9E-19 121.6 12.6 129 25-220 47-182 (285)
20 3g91_A MTH0212, exodeoxyribonu 99.6 2.1E-14 7.1E-19 118.9 12.9 55 24-78 21-77 (265)
21 2voa_A AF_EXO, XTHA, exodeoxyr 99.6 5.1E-14 1.8E-18 115.5 14.8 58 19-78 13-72 (257)
22 1hd7_A DNA-(apurinic or apyrim 99.5 2.7E-14 9.3E-19 121.8 11.8 130 25-221 80-216 (318)
23 1wdu_A TRAS1 ORF2P; four-layer 99.5 7E-14 2.4E-18 114.6 12.7 62 20-83 32-94 (245)
24 2j63_A AP-endonuclease; base e 99.4 1.3E-12 4.4E-17 117.5 14.4 57 23-79 169-230 (467)
25 2f1n_A CDT B, cytolethal diste 99.4 1.8E-12 6.3E-17 106.8 11.6 127 24-222 37-192 (262)
26 1sr4_B CDT B, cytolethal diste 99.3 1.5E-11 5.2E-16 102.0 11.5 52 165-221 132-183 (261)
27 2imq_X Salivary nitrophorin; f 99.3 8.9E-13 3.1E-17 111.2 3.2 63 149-222 116-178 (282)
28 2ei9_A Non-LTR retrotransposon 99.1 5.2E-10 1.8E-14 91.9 11.2 50 20-83 20-69 (240)
29 1i9z_A Synaptojanin, phosphati 98.9 4.5E-09 1.5E-13 91.0 9.5 66 149-220 147-212 (347)
30 2xsw_A 72 kDa inositol polypho 98.7 1.3E-08 4.5E-13 88.3 6.8 70 149-222 132-211 (357)
31 3mtc_A Type II inositol-1,4,5- 98.0 1.8E-05 6E-10 67.3 8.4 68 149-220 124-195 (313)
32 4a9c_A Phosphatidylinositol-3, 98.0 5E-05 1.7E-09 64.6 10.9 137 32-219 46-195 (316)
33 2q8u_A Exonuclease, putative; 36.6 77 0.0026 25.9 6.4 48 163-215 20-70 (336)
34 4fbw_A DNA repair protein RAD3 29.3 65 0.0022 27.9 4.8 49 163-217 15-63 (417)
35 3t1i_A Double-strand break rep 28.6 67 0.0023 28.0 4.8 50 163-218 34-83 (431)
36 4fbk_A DNA repair and telomere 25.6 81 0.0028 27.9 4.8 49 163-217 78-126 (472)
37 3tho_B Exonuclease, putative; 25.6 75 0.0026 26.7 4.5 49 164-217 3-54 (379)
38 2p8i_A Putative dioxygenase; Y 25.1 99 0.0034 21.8 4.3 43 167-223 12-54 (117)
39 1xx6_A Thymidine kinase; NESG, 24.0 80 0.0027 23.9 4.0 16 207-222 108-126 (191)
40 1z0n_A 5'-AMP-activated protei 23.1 32 0.0011 23.1 1.4 12 208-219 22-33 (96)
41 2nxf_A Putative dimetal phosph 22.4 90 0.0031 24.6 4.3 10 208-217 53-62 (322)
42 3ib7_A ICC protein; metallopho 21.1 75 0.0026 25.4 3.6 49 163-218 27-78 (330)
No 1
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=100.00 E-value=8.3e-36 Score=263.28 Aligned_cols=189 Identities=25% Similarity=0.492 Sum_probs=146.6
Q ss_pred CcccccCCCCCCCcCcChHHHHHHHHHHHhcCCCcEEEEeeecCCc---CcccccccCCCcEEEEccCC---------CC
Q 047989 1 VYVRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNED---FYKGNMETEGYSSLYIQRSG---------QK 68 (223)
Q Consensus 1 ~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~pDIi~LQEv~~~~---~l~~~L~~~gY~~~~~~~~~---------~~ 68 (223)
+|+++.+|+|||.+.+.|.+|++.|+++|..++|||||||||...+ ++...|...||.+++..+.. ++
T Consensus 43 ~~~~~~~~~~~p~~~~~W~~R~~~i~~~i~~~~pDIi~lQEv~~~q~~~~l~~~L~~~gY~~v~~~k~r~~~~~~~~~~~ 122 (398)
T 3ngq_A 43 KYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQERKH 122 (398)
T ss_dssp GGCCTTTCTTSCHHHHSHHHHHHHHHHHHHHHCCSEEEEEEEEHHHHHHTHHHHHHHTTEEEEEEESCTTSCCCHHHHHT
T ss_pred cCCccccccCCChhhcCHHHHHHHHHHHHHhcCCCEEEEecccHHHHHHHHHHHHHhCCceEEEecCCCccccccccccC
Confidence 4888999999999999999999999999999999999999998633 56777887899998875421 35
Q ss_pred eeeEEEEEecCCceeeeEeEEecccccccccCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCc
Q 047989 69 RDGCGIFYKISCAELLVEDRIYYNELVNSIKDGSSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDC 148 (223)
Q Consensus 69 ~~G~ai~~~~sr~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~ 148 (223)
.+|||||||+++|++++++.++|++..... +..|... ......+++
T Consensus 123 ~eG~AIfyr~~~f~ll~~~~i~ls~~~~~~------------------------s~~~~~~----------~~Ri~t~~n 168 (398)
T 3ngq_A 123 VDGCAIFFKTEKFTLVQKHTVEFNQVAMAN------------------------SDGSEAM----------LNRVMTKDN 168 (398)
T ss_dssp CEEEEEEEETTTEEEEEEEEEEHHHHHHHT------------------------CTTCHHH----------HHTTTTCCC
T ss_pred cceeEEEEECCcceEEeeeEEecCCCcccc------------------------cccchhh----------hcceeeccc
Confidence 799999999999999999999998753210 1122210 000134578
Q ss_pred EEEEEEEeecCC------------CCcEEEEEeeeeecCCCCCchhHHHHHHHHHHHHHHHHHhccCC------CCCCcE
Q 047989 149 VGIMAAFRLKGP------------FDHVVIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRY------DCVPSV 210 (223)
Q Consensus 149 ~~~~~~l~~~~~------------~~~~~~V~ntHL~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~------~~~~pv 210 (223)
+++++.|+.+.+ .++.|+|+||||.|+|.+.++|+.|+++|++.|+++.+...... ....|+
T Consensus 169 val~~~L~~~~~~~~~~~~~~~~~~~~~l~V~nTHL~~~p~~~~vRl~Q~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~Pv 248 (398)
T 3ngq_A 169 IGVAVVLEVHKELFGAGMKPIHAADKQLLIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPL 248 (398)
T ss_dssp EEEEEEEEECGGGC-----------CCEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHCC-------------CCCE
T ss_pred eeEEEEEEEcccccccccccccCCCCcEEEEEEeCcCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCce
Confidence 999999998741 23568999999999998899999999999999999854322111 135799
Q ss_pred EEeccCCCCCCCC
Q 047989 211 IVAGDFNSVPGDK 223 (223)
Q Consensus 211 Il~GDFN~~p~s~ 223 (223)
|||||||++|+|+
T Consensus 249 Il~GDFNs~P~s~ 261 (398)
T 3ngq_A 249 VLCADLNSLPDSG 261 (398)
T ss_dssp EEEEECSCCTTSH
T ss_pred EEEeeCCCCCCCH
Confidence 9999999999973
No 2
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.96 E-value=1.9e-31 Score=251.87 Aligned_cols=190 Identities=25% Similarity=0.447 Sum_probs=55.2
Q ss_pred CcccccCCCCCCCcCcChHHHHHHHHHHHhcCCCcEEEEeeecCCc---CcccccccCCCcEEEEccC---------CCC
Q 047989 1 VYVRSALYPHSPSACLKWKNRSDAVLTVLKSFGADFLCLQELDNED---FYKGNMETEGYSSLYIQRS---------GQK 68 (223)
Q Consensus 1 ~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~pDIi~LQEv~~~~---~l~~~L~~~gY~~~~~~~~---------~~~ 68 (223)
+|+.+..|++||.+.+.|.+|+..|+++|..++|||||||||+..+ ++...|...||.+++..+. ++.
T Consensus 406 ~~~~~~~~~~~p~~~~~w~~R~~~i~~~I~~~~pDIIcLQEV~~~~~~~~l~~~l~~~gY~~~~~~~~~~~~~~~~~~~~ 485 (727)
T 4b8c_D 406 HYATPKMYRYTPSWALSWDYRRNKLKEQILSYDSDLLCLQEVESKTFEEYWVPLLDKHGYTGIFHAKARAKTMHSKDSKK 485 (727)
T ss_dssp GGCCTTTCCSSCHHHHSHHHHHHHHHHHHHHSCCSSEEEC-CCHHHHHTTTCC-------CEEC----------------
T ss_pred ccCccccccccchhhhhhhhhhhHHHHHHHHcCCCeEEEEecCHHHHHHHHHHHHHhCCccEEEeccCCcccccccCCCC
Confidence 3888999999999999999999999999999999999999998632 5677788889998875332 346
Q ss_pred eeeEEEEEecCCceeeeEeEEecccccccccCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCc
Q 047989 69 RDGCGIFYKISCAELLVEDRIYYNELVNSIKDGSSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDC 148 (223)
Q Consensus 69 ~~G~ai~~~~sr~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~ 148 (223)
.+||||||+++||++++...++|++....... . ..++ +. +...+.|++
T Consensus 486 ~~G~AI~y~~srf~l~~~~~~~~~~~~~~~~~------~----~~~~--------------------~~--~~r~~~~~~ 533 (727)
T 4b8c_D 486 VDGCCIFFKRDQFKLITKDAMDFSGAWMKHKK------F----QRTE--------------------DY--LNRAMNKDN 533 (727)
T ss_dssp CCCCEEEC------------------------------------------------------------------------
T ss_pred cccEEEEEEcccceEeeeeEEeechhhhhchh------h----cccH--------------------HH--HhhcccCCc
Confidence 89999999999999999999988653321100 0 0000 00 001234566
Q ss_pred EEEEEEEeecCCCCcEEEEEeeeeecCCCCCchhHHHHHHHHHHHHHHHHHhcc----CCCCCCcEEEeccCCCCCCCC
Q 047989 149 VGIMAAFRLKGPFDHVVIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSD----RYDCVPSVIVAGDFNSVPGDK 223 (223)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~V~ntHL~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~----~~~~~~pvIl~GDFN~~p~s~ 223 (223)
+++++.|+++.+| ..|+|+||||+|.|.+.++|..|+..|+++++++.+.... ....+.|+|||||||+.|+|+
T Consensus 534 i~~~~~l~~~~~g-~~l~V~ntHL~~~p~~~~~R~~Qa~~l~~~l~~~~~~~~~~~~~~~~~~~pvIl~GDFNs~P~s~ 611 (727)
T 4b8c_D 534 VALFLKLQHIPSG-DTIWAVTTHLHWDPKFNDVKTFQVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNSYINSA 611 (727)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred EEEEEEEeecCCC-ceEEEEEeccccCCCCCchHHHHHHHHHHHHHHHHHHhcccccccccCCCceEEecccCCCCCCc
Confidence 8999999987666 4579999999999988899999999999999987543210 012367999999999999873
No 3
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.91 E-value=7.7e-24 Score=174.92 Aligned_cols=155 Identities=19% Similarity=0.269 Sum_probs=115.8
Q ss_pred cCcChHHHHHHHHHHHhcCCCcEEEEeeecCCc--CcccccccCCCcEEEEccC-CCCeeeEEEEEecCCceeeeEeEEe
Q 047989 14 ACLKWKNRSDAVLTVLKSFGADFLCLQELDNED--FYKGNMETEGYSSLYIQRS-GQKRDGCGIFYKISCAELLVEDRIY 90 (223)
Q Consensus 14 ~~~~w~~R~~~i~~~I~~~~pDIi~LQEv~~~~--~l~~~L~~~gY~~~~~~~~-~~~~~G~ai~~~~sr~~i~~~~~i~ 90 (223)
....|+.|+..|+++|..++||||||||++..+ .+... .||.++...+. +...+|+|||+|+++|++++...++
T Consensus 16 ~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~~~~l~~~---l~y~~~~~~~~~~~~~~g~ail~r~~~~~~~~~~~~~ 92 (257)
T 3l1w_A 16 QDWQWSFRKEAVCQLINFHDWSLCCIQEVRPNQVRDLKAY---TTFTCLSAEREGDGQGEGLAILYNEQKVQAIDTGYFW 92 (257)
T ss_dssp GGGSHHHHHHHHHHHHHHHCCSEEEEEEECHHHHHHHHHH---SSSEEEEEESSSSSCSCEEEEEECTTTEEEEEEEEEE
T ss_pred cccChHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHhc---CCCcEEEecccCCCCCceEEEEEEcceEEEEecCeEE
Confidence 446799999999999999999999999998644 33332 38987665443 2467899999999999999999998
Q ss_pred cccccccccCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCcEEEEEEEeecCCCCcEEEEEee
Q 047989 91 YNELVNSIKDGSSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVATT 170 (223)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~~V~nt 170 (223)
+++.. +. + ...|. . ..+| .++++.++.+.++ ..+.|+||
T Consensus 93 l~~~~--------------------~~---~-~~~~~---------~-----~~~r--~~~~~~~~~~~~g-~~~~v~~~ 131 (257)
T 3l1w_A 93 LSETP--------------------QQ---P-SIHPE---------A-----GCPR--IALWGLFKETTQN-TPFLVINV 131 (257)
T ss_dssp SSSST--------------------TS---S-CCCTT---------C-----SSCC--EEEEEEEEETTCS-SCEEEEEE
T ss_pred CcCCC--------------------Cc---c-ccccc---------c-----cccc--eeEEEEEEEcCCC-CEEEEEEe
Confidence 86521 10 0 00110 0 2345 6788999887555 45799999
Q ss_pred eeecCCCCCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCCCC
Q 047989 171 HLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVPGD 222 (223)
Q Consensus 171 HL~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p~s 222 (223)
||.+. +...|..|++.|++.+++... .+ |+|+|||||+.|++
T Consensus 132 Hl~~~--~~~~r~~q~~~l~~~i~~~~~-------~~-pvil~GDfN~~~~~ 173 (257)
T 3l1w_A 132 HLDHI--SAHARLAGMTVILEELHDKIA-------QY-PTLLMGDFNAESGE 173 (257)
T ss_dssp ECCSS--CHHHHHHHHHHHHHHTHHHHH-------HS-CEEEEEECCCCTTS
T ss_pred CCCCC--CHHHHHHHHHHHHHHHHHHcC-------CC-CEEEEeeCCCCCCc
Confidence 99875 456899999999999984322 23 99999999999986
No 4
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=5.5e-24 Score=180.44 Aligned_cols=157 Identities=18% Similarity=0.252 Sum_probs=116.9
Q ss_pred CcChHHHHHHHHHHHhcCCCcEEEEeeecCCc--CcccccccCCCcEEEEccC--CCCeeeEEEEEecCCceeeeEeEEe
Q 047989 15 CLKWKNRSDAVLTVLKSFGADFLCLQELDNED--FYKGNMETEGYSSLYIQRS--GQKRDGCGIFYKISCAELLVEDRIY 90 (223)
Q Consensus 15 ~~~w~~R~~~i~~~I~~~~pDIi~LQEv~~~~--~l~~~L~~~gY~~~~~~~~--~~~~~G~ai~~~~sr~~i~~~~~i~ 90 (223)
...|..|++.|+++|...+|||||||||...+ .+...|. +|.++...+. ...++++||||++|||++++...++
T Consensus 25 ~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~~~~l~~~l~--~y~~~~~~~~~g~~~g~~~aily~~sr~~i~~~~~~~ 102 (298)
T 3mpr_A 25 GDGWGQRYPVIAQMVQYHDFDIFGTQECFLHQLKDMKEALP--GYDYIGVGRDDGKDKGEHSAIFYRTDKFDIVEKGDFW 102 (298)
T ss_dssp TCCHHHHHHHHHHHHHHTTCSEEEEESBCHHHHHHHHHHST--TEEEECCCTTTSSSSSCBCCEEEETTTEEEEEEEEEE
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHhCC--CCcEEEEecCCCCCCCceeEEEEecCceEEEeccEEE
Confidence 45799999999999999999999999997643 4555554 6776654332 1245569999999999999999998
Q ss_pred cccccccccCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCcEEEEEEEeecCCCCcEEEEEee
Q 047989 91 YNELVNSIKDGSSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVATT 170 (223)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~~V~nt 170 (223)
+++.. .. + ...|.. ..+| .++++.++.+.++ +.|.|+||
T Consensus 103 l~~~p--------------------~~---~-~~~~~~--------------~~~R--~~~~~~~~~~~~g-~~~~v~~~ 141 (298)
T 3mpr_A 103 LSETP--------------------DV---P-SKGWDA--------------VLPR--ICSWGHFKCKDTG-FEFLFFNL 141 (298)
T ss_dssp SSSST--------------------TS---S-CCCTTC--------------SSCC--EEEEEEEEETTTC-CEEEEEEE
T ss_pred ccCCC--------------------Cc---c-Cccccc--------------ccCc--eeEEEEEEEcCCC-CEEEEEEe
Confidence 86531 10 1 112321 2346 6789999876555 55899999
Q ss_pred eeecCCCCCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCCCC
Q 047989 171 HLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVPGD 222 (223)
Q Consensus 171 HL~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p~s 222 (223)
||.+. +...|..|++.|++.++++.+ ..+.|+|||||||+.|++
T Consensus 142 Hl~~~--~~~~R~~q~~~l~~~i~~~~~------~~~~pvIl~GDfN~~~~~ 185 (298)
T 3mpr_A 142 HMDHI--GKKARVESAFLVQEKMKELGR------GKNLPAILTGDFNVDQTH 185 (298)
T ss_dssp ECCSS--CHHHHHHHHHHHHHHHHHTTT------TSCCCEEEEEECSSCTTS
T ss_pred cCCCC--CHHHHHHHHHHHHHHHHHHhc------CCCCcEEEEEeCCCCCCC
Confidence 99854 457899999999998887521 035799999999999986
No 5
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.91 E-value=7.8e-24 Score=176.00 Aligned_cols=157 Identities=19% Similarity=0.321 Sum_probs=117.9
Q ss_pred cCcChHHHHHHHHHHHhcCCCcEEEEeeecCCc--CcccccccCCCcEEEEccC-C-CCeeeEEEEEecCCceeeeEeEE
Q 047989 14 ACLKWKNRSDAVLTVLKSFGADFLCLQELDNED--FYKGNMETEGYSSLYIQRS-G-QKRDGCGIFYKISCAELLVEDRI 89 (223)
Q Consensus 14 ~~~~w~~R~~~i~~~I~~~~pDIi~LQEv~~~~--~l~~~L~~~gY~~~~~~~~-~-~~~~G~ai~~~~sr~~i~~~~~i 89 (223)
+...|..|.+.|+++|...+||||||||+...+ .+...|. +|.++...+. + ..++++||||++++|++++...+
T Consensus 19 ~~~~~~~r~~~i~~~i~~~~~DIv~LQEv~~~~~~~l~~~l~--~y~~~~~~~~~~~~~g~~~ail~~~s~~~~~~~~~~ 96 (267)
T 3g6s_A 19 SLNNWQYRKDRVCQFIKDHELDIVGMQEVLHNQFQDLRAGLP--EYDGIGVGRDDGKTAGEYAPLFYRKDKYEVLDSNTF 96 (267)
T ss_dssp GGGSGGGTHHHHHHHHHHTTCSEEEEESBCHHHHHHHHHHCT--TEEEECCCTTTSSSSSCBCCEEEETTTEEEEEEEEE
T ss_pred cccCHHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHhcc--CCcEEEecCCCCCcCCceeEEEEEccceEEEecccE
Confidence 356799999999999999999999999998643 4444453 7877654332 1 34567999999999999999999
Q ss_pred ecccccccccCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCcEEEEEEEeecCCCCcEEEEEe
Q 047989 90 YYNELVNSIKDGSSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVAT 169 (223)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~~V~n 169 (223)
+++.... .+....|.. ..+| .++++.++.+.++ ..+.|+|
T Consensus 97 ~l~~~~~-----------------------~~~~~~~~~--------------~~~R--~~~~~~~~~~~~~-~~~~v~~ 136 (267)
T 3g6s_A 97 WLAENPD-----------------------SVGMMGWDA--------------VCVR--IATWAKFKDKATG-KIFMAVN 136 (267)
T ss_dssp ESSSCTT-----------------------STTCCCTTC--------------SSCC--EEEEEEEEETTTC-CEEEEEE
T ss_pred ecCCCCC-----------------------ccccccccc--------------cCcc--eEEEEEEEEcCCC-CEEEEEE
Confidence 8865310 011112321 2346 6789999986655 5589999
Q ss_pred eeeecCCCCCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCCCC
Q 047989 170 THLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVPGD 222 (223)
Q Consensus 170 tHL~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p~s 222 (223)
|||.+. +...|..|++.|++.++++. .+.|+|||||||+.|+|
T Consensus 137 ~Hl~~~--~~~~R~~q~~~l~~~l~~~~--------~~~pvIl~GDfN~~~~~ 179 (267)
T 3g6s_A 137 THFDHV--GEEARRQSALLIIRKIKEIV--------GERPAVVTGDFNVTDAS 179 (267)
T ss_dssp EECCSS--CHHHHHHHHHHHHHHHHHHT--------TTSCEEEEEECSSCTTS
T ss_pred eCCCCC--CHHHHHHHHHHHHHHHHHhc--------CCCCEEEEeECCCCCCC
Confidence 999865 45789999999999998862 25799999999999986
No 6
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.83 E-value=8.9e-20 Score=148.99 Aligned_cols=144 Identities=19% Similarity=0.149 Sum_probs=101.6
Q ss_pred cChHHHHHHHHHHHhcCCCcEEEEeeecCCc--CcccccccCCCcEEEEccCCCCeeeEEEEEecCCceeeeEeEEeccc
Q 047989 16 LKWKNRSDAVLTVLKSFGADFLCLQELDNED--FYKGNMETEGYSSLYIQRSGQKRDGCGIFYKISCAELLVEDRIYYNE 93 (223)
Q Consensus 16 ~~w~~R~~~i~~~I~~~~pDIi~LQEv~~~~--~l~~~L~~~gY~~~~~~~~~~~~~G~ai~~~~sr~~i~~~~~i~~~~ 93 (223)
.+|..|.+.|+++|.+++||||||||+...+ .+...+ +|..++.. ......|++|+++ +++++.....+.++.
T Consensus 27 ~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~l~~~~---~~~~~~~~-~~~~~~g~~il~~-~~~~~~~~~~~~~~~ 101 (256)
T 4fva_A 27 RSLLTRMKAVAHIVKNVNPDILFLQEVVDRDLAPIDKLQ---SLYKIYYS-NKGCQYYTAILVS-KMFDVEKHDVIHFQN 101 (256)
T ss_dssp TTHHHHHHHHHHHHHHHCCSEEEEEEECSTTCHHHHGGG---GTEEEEES-STTSSSEEEEEEE-TTCEEEEEEEEECTT
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEEecChhHhHHHHHhc---CCceEeec-CCCCCcceEEEEe-ecccceecccccCCC
Confidence 4688999999999999999999999997644 333323 23333332 2456789999988 478887776665533
Q ss_pred ccccccCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCcEEEEEEEeecCCCCcEEEEEeeeee
Q 047989 94 LVNSIKDGSSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVATTHLY 173 (223)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~~V~ntHL~ 173 (223)
.. ..+ .++.+.++.. + ..+.|+||||.
T Consensus 102 ~~------------------------------------------------~~~--~~~~~~~~~~--g-~~~~v~~~Hl~ 128 (256)
T 4fva_A 102 SG------------------------------------------------MYR--TLQILEGSIG--G-LKVFLLNTHLE 128 (256)
T ss_dssp CS------------------------------------------------SCC--EEEEEEEEET--T-EEEEEEEEECC
T ss_pred Cc------------------------------------------------ccc--eeEEEEEEeC--C-eEEEEEEecCC
Confidence 10 012 2345555543 3 56899999998
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCCCC
Q 047989 174 WDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVPGD 222 (223)
Q Consensus 174 ~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p~s 222 (223)
+.......|..|++.+++.+..+.+. ..+.|+|+|||||..|.+
T Consensus 129 ~~~~~~~~~~~q~~~~~~~~~~~~~~-----~~~~~vIl~GDfN~~~~~ 172 (256)
T 4fva_A 129 STREHRPQRCAQFGFCMDKVREIIAQ-----NPGALVFFGGDLNLRDEE 172 (256)
T ss_dssp CSGGGHHHHHHHHHHHHHHHHHHHHH-----STTCEEEEEEECCCCGGG
T ss_pred CCCcchHHHHHHHHHHHHHhhhhhhc-----cCCCcEEEeccCCCCcch
Confidence 76555667889999998888776543 246799999999998764
No 7
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.83 E-value=5.1e-20 Score=160.83 Aligned_cols=144 Identities=20% Similarity=0.147 Sum_probs=102.4
Q ss_pred cChHHHHHHHHHHHhcCCCcEEEEeeecCCc--CcccccccCCCcEEEEccCCCCeeeEEEEEecCCceeeeEeEEeccc
Q 047989 16 LKWKNRSDAVLTVLKSFGADFLCLQELDNED--FYKGNMETEGYSSLYIQRSGQKRDGCGIFYKISCAELLVEDRIYYNE 93 (223)
Q Consensus 16 ~~w~~R~~~i~~~I~~~~pDIi~LQEv~~~~--~l~~~L~~~gY~~~~~~~~~~~~~G~ai~~~~sr~~i~~~~~i~~~~ 93 (223)
.+|..|.+.|+++|..++|||||||||...+ .+...+. +|..++. ......|+|||+|+ ++++.....+.+..
T Consensus 133 ~~~~~R~~~I~~~I~~~~PDIV~LQEv~~~~~~~l~~~~~--~y~~~~~--~~~~~~G~aIlsk~-~i~~~~~~~~~~~~ 207 (362)
T 4gew_A 133 RSLLTRMKAVAHIVKNVNPDILFLQEVVDRDLAPIDKLQS--LYKIYYS--NKGCQYYTAILVSK-MFDVEKHDVIHFQN 207 (362)
T ss_dssp TTHHHHHHHHHHHHHHHCCSEEEEEEECSTTCHHHHGGGG--TEEEEES--STTSSSEEEEEEET-TEEEEEEEEEECTT
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEEcCChhHhHHHHHhcC--CceEEeC--CCCCCceEEEEEec-cCccccccccCCCC
Confidence 3577889999999999999999999997644 3333333 5655443 23467899999884 67776665554432
Q ss_pred ccccccCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCcEEEEEEEeecCCCCcEEEEEeeeee
Q 047989 94 LVNSIKDGSSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVATTHLY 173 (223)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~~V~ntHL~ 173 (223)
. ...| .++++.+... | ..|.|+||||.
T Consensus 208 ~------------------------------------------------~~~r--~~l~~~i~~~--g-~~l~v~ntHL~ 234 (362)
T 4gew_A 208 S------------------------------------------------GMYR--TLQILEGSIG--G-LKVFLLNTHLE 234 (362)
T ss_dssp C------------------------------------------------SSCC--EEEEEEEEET--T-EEEEEEEEECC
T ss_pred C------------------------------------------------cccc--eEEEEEEEEC--C-EEEEEEEecCC
Confidence 1 1113 3456666653 3 56899999998
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCCCC
Q 047989 174 WDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVPGD 222 (223)
Q Consensus 174 ~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p~s 222 (223)
+.......|..|++.+++.+..+... ..+.|+|+|||||..|.+
T Consensus 235 s~~~~~~~R~~Q~~~l~~~~~~~~~~-----~~~~pvIl~GDFN~~p~~ 278 (362)
T 4gew_A 235 STREHRPQRCAQFGFCMDKVREIIAQ-----NPGALVFFGGDLNLRDEE 278 (362)
T ss_dssp CSGGGHHHHHHHHHHHHHHHHHHHHH-----CTTCEEEEEEECCCCGGG
T ss_pred ccccchhHHHHHHHHHHHHhHhhhhc-----CCCCCeEEeecCCCCCcc
Confidence 76555567999999999888876442 246799999999998865
No 8
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.83 E-value=2e-20 Score=152.68 Aligned_cols=140 Identities=19% Similarity=0.200 Sum_probs=98.4
Q ss_pred cChHHHHHHHHHHHhcCCCcEEEEeeecCCc--CcccccccCCCcEEEEccCCCCeeeEEEEEecCCceeeeEeEEeccc
Q 047989 16 LKWKNRSDAVLTVLKSFGADFLCLQELDNED--FYKGNMETEGYSSLYIQRSGQKRDGCGIFYKISCAELLVEDRIYYNE 93 (223)
Q Consensus 16 ~~w~~R~~~i~~~I~~~~pDIi~LQEv~~~~--~l~~~L~~~gY~~~~~~~~~~~~~G~ai~~~~sr~~i~~~~~i~~~~ 93 (223)
.+|..|.+.|+++|..++|||||||||...+ .+...+. +|.+.. . .....|.+++++++++.+.......+..
T Consensus 23 ~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~l~~~~~--~~~~~~--~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 97 (256)
T 4gz1_A 23 CNLPERARGVCSCLALYSPDVVFLQEVIPPYCAYLKKRAA--SYTIIT--G-NEEGYFTAILLKKGRVKFKSQEIIPFPN 97 (256)
T ss_dssp TTHHHHHHHHHHHHHHHCCSEEEEEEECHHHHHHHHHHCT--TEEEEE--S-CSSSSEEEEEEETTTEEEEEEEEEECTT
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHhhcc--ccceee--c-cccCCceEEEEEeccccceecccccCCc
Confidence 4688999999999999999999999996533 2222222 233222 2 3456788899998998888766554432
Q ss_pred ccccccCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCcEEEEEEEeecCCCCcEEEEEeeeee
Q 047989 94 LVNSIKDGSSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVATTHLY 173 (223)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~~V~ntHL~ 173 (223)
. ...+ .++.+.+... + ..+.|+||||.
T Consensus 98 ~------------------------------------------------~~~~--~~~~~~~~~~--~-~~~~v~~~Hl~ 124 (256)
T 4gz1_A 98 T------------------------------------------------KMMR--NLLCVNVSLG--G-NEFCLMTSHLE 124 (256)
T ss_dssp C------------------------------------------------SSCC--EEEEEEEEET--T-EEEEEEECBCC
T ss_pred c------------------------------------------------cccc--eEEEEEEEeC--C-EEEEEEeeccc
Confidence 1 0012 2344454442 3 56899999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCCC
Q 047989 174 WDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVPG 221 (223)
Q Consensus 174 ~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p~ 221 (223)
+.+.....|..|+..+++.+++. ..+.|+|+|||||+.|.
T Consensus 125 ~~~~~~~~~~~q~~~~~~~l~~~--------~~~~pvIl~GDfN~~~~ 164 (256)
T 4gz1_A 125 STREHSAERIRQLKTVLGKMQEA--------PDSTTVIFAGDTNLRDQ 164 (256)
T ss_dssp CSGGGHHHHHHHHHHHHHHHHHS--------CTTSEEEEEEECCCCHH
T ss_pred ccccchhhhhHHHHHHhhhhhhc--------cCcceEEEeCccCCCcc
Confidence 87666678999999998888764 24679999999998764
No 9
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.83 E-value=2e-20 Score=150.73 Aligned_cols=140 Identities=19% Similarity=0.189 Sum_probs=98.1
Q ss_pred cChHHHHHHHHHHHhcCCCcEEEEeeecCCc--CcccccccCCCcEEEEccCCCCeeeEEEEEecCCceeeeEeEEeccc
Q 047989 16 LKWKNRSDAVLTVLKSFGADFLCLQELDNED--FYKGNMETEGYSSLYIQRSGQKRDGCGIFYKISCAELLVEDRIYYNE 93 (223)
Q Consensus 16 ~~w~~R~~~i~~~I~~~~pDIi~LQEv~~~~--~l~~~L~~~gY~~~~~~~~~~~~~G~ai~~~~sr~~i~~~~~i~~~~ 93 (223)
.+|..|.+.|+++|+.++|||||||||...+ .+... .++...+.. .....+.+++++++++++++...+.+..
T Consensus 17 ~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~l~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (250)
T 4f1h_A 17 LNLADRARGLCSYLALYTPDVVFLQELIPAYVQYLKKR---AVSYLFFEG--SDDGYFTGIMLRKSRVKFLESEIICFPT 91 (250)
T ss_dssp TTHHHHHHHHHHHHHHHCCSEEEEEEECHHHHHHHHHH---CTTEEEEES--CSSSSEEEEEEETTTCEEEEEEEEECTT
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh---ccCceeecc--cccccCceeEEeeccccceecccccccC
Confidence 4688999999999999999999999997533 22222 233333332 2344555677778999999988776543
Q ss_pred ccccccCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCcEEEEEEEeecCCCCcEEEEEeeeee
Q 047989 94 LVNSIKDGSSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVATTHLY 173 (223)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~~V~ntHL~ 173 (223)
.. ..+ .++.+.+.. .+ ..+.|+|+|+.
T Consensus 92 ~~------------------------------------------------~~~--~~~~~~~~~--~~-~~~~v~~~hl~ 118 (250)
T 4f1h_A 92 TQ------------------------------------------------MMR--NLLIAQVTF--SG-QKLYLMTSHLE 118 (250)
T ss_dssp CS------------------------------------------------SCC--EEEEEEEEE--TT-EEEEEEECBCC
T ss_pred cc------------------------------------------------ccc--eEEEEEEec--CC-cEEEEeccccc
Confidence 10 012 234444443 33 56899999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCCC
Q 047989 174 WDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVPG 221 (223)
Q Consensus 174 ~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p~ 221 (223)
+.+.....|..|++.+++.+++. ....|+|+|||||+.|.
T Consensus 119 ~~~~~~~~r~~q~~~~~~~l~~~--------~~~~pvIl~GDfN~~~~ 158 (250)
T 4f1h_A 119 SCKNQSQERTKQLRVVLQKIKEA--------PEDAIVIFAGDTNLRDA 158 (250)
T ss_dssp CSGGGHHHHHHHHHHHHHHHHHS--------CTTEEEEEEEECCCCHH
T ss_pred cccccHHHHHHHHHHHHHHHHhc--------CCCCCEEEEEecCCCCc
Confidence 87766678999999998888764 24579999999998764
No 10
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.82 E-value=6.7e-20 Score=151.27 Aligned_cols=143 Identities=13% Similarity=0.120 Sum_probs=101.7
Q ss_pred cChHHHHHHHHHHHhcCCCcEEEEeeecCCc----------------CcccccccCC---CcEEEE---ccCCCCeeeEE
Q 047989 16 LKWKNRSDAVLTVLKSFGADFLCLQELDNED----------------FYKGNMETEG---YSSLYI---QRSGQKRDGCG 73 (223)
Q Consensus 16 ~~w~~R~~~i~~~I~~~~pDIi~LQEv~~~~----------------~l~~~L~~~g---Y~~~~~---~~~~~~~~G~a 73 (223)
.++..|...|+++|..++||||||||+.... .+...|...+ |..++. ........|+|
T Consensus 17 ~~~~~~~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~~g~a 96 (266)
T 3teb_A 17 ENQMEKIDILARTIAEKQYDVIAMQEVNQLMNNKIIFDDIREENYAWVLLETLQKYTDTDYYLHWSNSHIGFGKYNEGVA 96 (266)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEEEEEETTSCEEETTEETTCHHHHHHHHHTTTCCSCCEEEEEEEEECSTTEEEEEE
T ss_pred cchhHHHHHHHHHHHhcCCCEEEEEEccccccccccccccccccHHHHHHHHHHHhCCCCeEEEEeccccCccccCCeEE
Confidence 3577889999999999999999999996421 0345555444 765432 12234667999
Q ss_pred EEEecCCceeeeEeEEecccccccccCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCcEEEEE
Q 047989 74 IFYKISCAELLVEDRIYYNELVNSIKDGSSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMA 153 (223)
Q Consensus 74 i~~~~sr~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~~~~~~ 153 (223)
|| +|++++....+.++... . ...| ..| .++.+
T Consensus 97 il---sr~~~~~~~~~~~~~~~--------------------~------~~~~-----------------~~r--~~~~~ 128 (266)
T 3teb_A 97 VI---TRHKIKAEDEFYCTFAQ--------------------S------VRTI-----------------SAR--RIVSI 128 (266)
T ss_dssp EE---ESSCCSEEEEEECSSCC--------------------C------TTCT-----------------TCC--EEEEE
T ss_pred EE---ECceecCceeEEeCCCC--------------------C------CCCc-----------------ccc--eEEEE
Confidence 99 67999999888876421 0 0001 124 35667
Q ss_pred EEeecCCCCcEEEEEeeeeecCCCCCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCC
Q 047989 154 AFRLKGPFDHVVIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVP 220 (223)
Q Consensus 154 ~l~~~~~~~~~~~V~ntHL~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p 220 (223)
.++.. + ..+.|+||||.+.+.+...|..|++.|++.+++ ..|+|+|||||+.|
T Consensus 129 ~~~~~--~-~~~~v~~~Hl~~~~~~~~~r~~q~~~l~~~~~~-----------~~~~il~GDfN~~~ 181 (266)
T 3teb_A 129 TINYE--G-QDIEFYSCHMNLPNCETEDMGKNIQTILNRTQN-----------SNLKILMGDFNTDA 181 (266)
T ss_dssp EEEET--T-EEEEEEEEECCCTTCTTCCHHHHHHHHHTSSCS-----------CCEEEEEEECCCCT
T ss_pred EEEeC--C-eEEEEEEecCCCccCChHHHHHHHHHHHHHHhc-----------CCcEEEEeECCCCC
Confidence 77653 3 668999999998765667899999988765543 46999999999998
No 11
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.79 E-value=1.9e-19 Score=151.76 Aligned_cols=149 Identities=13% Similarity=0.081 Sum_probs=99.7
Q ss_pred Ch--HHHHHHHHHHHhcCCCcEEEEeeecCCc---Cccccccc-CCCcEEEEcc--------------CCCCeeeEEEEE
Q 047989 17 KW--KNRSDAVLTVLKSFGADFLCLQELDNED---FYKGNMET-EGYSSLYIQR--------------SGQKRDGCGIFY 76 (223)
Q Consensus 17 ~w--~~R~~~i~~~I~~~~pDIi~LQEv~~~~---~l~~~L~~-~gY~~~~~~~--------------~~~~~~G~ai~~ 76 (223)
.| ..|...+...|...+||||||||+...+ .+...|.. .+|.+.+... ......|+|||
T Consensus 28 ~~~~~~r~~~i~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~G~ail- 106 (301)
T 1zwx_A 28 NWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNLREMYPHQTPVIGRSKHGWDKTEGNYSNFALEDGGVAVV- 106 (301)
T ss_dssp TSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHHHHHHHHHTTTTCCEECCCTTSCSTTCSEEEC-----CCBCCCCEEE-
T ss_pred CCCHHHHHHHHHHhhccCCCCEEEEeccccHHHHHHHHHHHhhcCCccccccCCccccccccccccccccccCCCEEEE-
Confidence 46 6788888888899999999999997532 23223332 2232211110 11245799999
Q ss_pred ecCCceeeeEeEEecccccccccCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCcEEEEEEEe
Q 047989 77 KISCAELLVEDRIYYNELVNSIKDGSSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFR 156 (223)
Q Consensus 77 ~~sr~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~~~~~~~l~ 156 (223)
|||+++....+.++... .|. ....| .++++.++
T Consensus 107 --Sr~pi~~~~~~~~~~~~-----------------------------~~~--------------~~~~r--~~~~~~~~ 139 (301)
T 1zwx_A 107 --SQWPIVEKSQHIFQRGG-----------------------------GAD--------------RLSNK--GFAYVKIM 139 (301)
T ss_dssp --ESSCEEEEEEEECSCCC-----------------------------GGG--------------GGBCC--EEEEEEEE
T ss_pred --ecCCcccceEEEecCCC-----------------------------Ccc--------------cccCC--CeEEEEEE
Confidence 78999998888775310 000 02234 46778877
Q ss_pred ecCCCCcEEEEEeeeeecCCC------CCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCCCC
Q 047989 157 LKGPFDHVVIVATTHLYWDPE------LADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVPGD 222 (223)
Q Consensus 157 ~~~~~~~~~~V~ntHL~~~~~------~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p~s 222 (223)
.. + +.+.|+||||.+... ....|..|++.|.+++++.. .+.+.|+|||||||+.|++
T Consensus 140 ~~--g-~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~------~~~~~pvIl~GDfN~~~~~ 202 (301)
T 1zwx_A 140 KN--G-KPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKKN------IPKDEIIFIGGDLNVNYGT 202 (301)
T ss_dssp ET--T-EEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHT------CCTTSEEEEEEECCCCTTS
T ss_pred EC--C-EEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHhC------CCCCCeEEEEeeCCCCCCc
Confidence 63 3 668999999986521 23579999999998888741 1245799999999999986
No 12
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=99.79 E-value=8.2e-19 Score=150.19 Aligned_cols=150 Identities=15% Similarity=0.099 Sum_probs=101.1
Q ss_pred cChHHHHHHHHHHHhcCCCcEEEEeeecCCc---Cccccccc-CCCcEEEEccCC--------------CCeeeEEEEEe
Q 047989 16 LKWKNRSDAVLTVLKSFGADFLCLQELDNED---FYKGNMET-EGYSSLYIQRSG--------------QKRDGCGIFYK 77 (223)
Q Consensus 16 ~~w~~R~~~i~~~I~~~~pDIi~LQEv~~~~---~l~~~L~~-~gY~~~~~~~~~--------------~~~~G~ai~~~ 77 (223)
..|..|...|...|...+||||||||++... .+...|.. .+|.+....... ....|++||
T Consensus 48 ~~~~~R~~~i~~~~~~~~pDIv~LQEv~~~~~~~~l~~~L~~~~py~~~~~g~~~~~~~~~~~~y~~~~~~~~G~~il-- 125 (317)
T 3i41_A 48 WGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVLGRSQSGWDKTEGSYSSTVAEDGGVAIV-- 125 (317)
T ss_dssp SCHHHHHHHHHHCSTTSSCSEEEEEEECSHHHHHHHHHHTTTTCCEECCCTTSCSTTCSEEEESCCSSCSBCCCCEEE--
T ss_pred ccHHHHHHHHHHHhhccCCCEEEEEeeccHHHHHHHHHHHHHhCCcccccCCccccCccCcccccccccccCCccEEE--
Confidence 3589999999999988999999999997632 33344442 233221111110 012599999
Q ss_pred cCCceeeeEeEEecccccccccCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCcEEEEEEEee
Q 047989 78 ISCAELLVEDRIYYNELVNSIKDGSSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRL 157 (223)
Q Consensus 78 ~sr~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~~~~~~~l~~ 157 (223)
||+|++....+.++... .|.. ...| .++.+.++.
T Consensus 126 -Sr~Pi~~~~~~~~~~~~-----------------------------~~d~--------------~~~r--~~~~~~i~~ 159 (317)
T 3i41_A 126 -SKYPIKEKIQHVFKSGC-----------------------------GFDN--------------DSNK--GFVYTKIEK 159 (317)
T ss_dssp -ESSCEEEEEEEECSCCC-----------------------------SSGG--------------GBCC--EEEEEEEEE
T ss_pred -eCCCCccceeEECCCCC-----------------------------Cccc--------------ccCc--ceEEEEEEE
Confidence 78999998877765310 0100 2234 456666665
Q ss_pred cCCCCcEEEEEeeeeecCCC------CCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCCCC
Q 047989 158 KGPFDHVVIVATTHLYWDPE------LADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVPGD 222 (223)
Q Consensus 158 ~~~~~~~~~V~ntHL~~~~~------~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p~s 222 (223)
. | ..|.|+||||.+... ....|..|+..|.+++++.. .+.+.|||||||||+.|+|
T Consensus 160 ~--g-~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~------~~~~~pvIl~GDfN~~~~s 221 (317)
T 3i41_A 160 N--G-KNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKN------IPKDETVYIGGDLNVNKGT 221 (317)
T ss_dssp T--T-EEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHHT------CCTTSCEEEEEECCCCTTS
T ss_pred C--C-EEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHhc------cCCCCeEEEEeECCCCCCC
Confidence 3 3 668999999987532 14679999999999998751 1246799999999999987
No 13
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=99.76 E-value=4.8e-18 Score=140.21 Aligned_cols=141 Identities=20% Similarity=0.196 Sum_probs=94.4
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEeeecCCc--CcccccccCCCcEEEEccCCCCeeeEEEEEecCCceeeeEeEEeccccc
Q 047989 18 WKNRSDAVLTVLKSFGADFLCLQELDNED--FYKGNMETEGYSSLYIQRSGQKRDGCGIFYKISCAELLVEDRIYYNELV 95 (223)
Q Consensus 18 w~~R~~~i~~~I~~~~pDIi~LQEv~~~~--~l~~~L~~~gY~~~~~~~~~~~~~G~ai~~~~sr~~i~~~~~i~~~~~~ 95 (223)
+..|.+.|+++|...+||||||||+.... .....+...||.+++.+. .+..|+|||+| +++..... .+...
T Consensus 11 ~~~~~~~i~~~i~~~~~Dii~LQE~~~~~~~~~~~~l~~~gy~~~~~~~--~~~~G~ailsr---~~~~~~~~-~~~~~- 83 (268)
T 1ako_A 11 LRARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQ--KGHYGVALLTK---ETPIAVRR-GFPGD- 83 (268)
T ss_dssp GGGCHHHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHHTTCEEEEEEE--TTEEEEEEEES---SCCSEEEE-SSTTC-
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeccCChhhCCHhHhccCCCcEEEeCC--CCcceEEEEEe---cCcceeee-CCCCc-
Confidence 44577899999999999999999997644 333345446898876542 35789999964 45443221 11100
Q ss_pred ccccCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCcEEEEEEEeecCCCCcEEEEEeeeeecC
Q 047989 96 NSIKDGSSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVATTHLYWD 175 (223)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~~V~ntHL~~~ 175 (223)
+ ....| .++++.++.. + +.+.|+|||+.+.
T Consensus 84 ------------------------------~---------------~~~~~--~~~~~~~~~~--~-~~~~v~~~Hl~~~ 113 (268)
T 1ako_A 84 ------------------------------D---------------EEAQR--RIIMAEIPSL--L-GNVTVINGYFPQG 113 (268)
T ss_dssp ------------------------------C---------------HHHHT--TEEEEEEEET--T-EEEEEEEEECCCC
T ss_pred ------------------------------c---------------cccCC--CEEEEEEEcC--C-CeEEEEEEEecCC
Confidence 0 01123 2467777765 3 4689999999865
Q ss_pred CCCC-----chhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCCCC
Q 047989 176 PELA-----DVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVPGD 222 (223)
Q Consensus 176 ~~~~-----~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p~s 222 (223)
.... ..|..|++.|.+.++++. ..+.|+|+|||||+.|.+
T Consensus 114 ~~~~~~~~~~~r~~~~~~l~~~~~~~~-------~~~~~~Il~GDFN~~~~~ 158 (268)
T 1ako_A 114 ESRDHPIKFPAKAQFYQNLQNYLETEL-------KRDNPVLIMGDMNISPTD 158 (268)
T ss_dssp CBTTCTTHHHHHHHHHHHHHHHHHHHC-------CTTSCEEEEEECCCCCSG
T ss_pred CCcccchhHHHHHHHHHHHHHHHHHhh-------hCCCCEEEEeECCCCCch
Confidence 3221 257888888888877652 135799999999999875
No 14
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.74 E-value=8.3e-18 Score=141.83 Aligned_cols=145 Identities=17% Similarity=0.103 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeeecCCc---Cccccccc-C-------------CCcEEEEcc--CCCCeeeEEEEEecC
Q 047989 19 KNRSDAVLTVLKSFGADFLCLQELDNED---FYKGNMET-E-------------GYSSLYIQR--SGQKRDGCGIFYKIS 79 (223)
Q Consensus 19 ~~R~~~i~~~I~~~~pDIi~LQEv~~~~---~l~~~L~~-~-------------gY~~~~~~~--~~~~~~G~ai~~~~s 79 (223)
..|...+...+...+||||||||+...+ .+...|.. . ||...+... ......|+||+ |
T Consensus 31 ~~r~~~~~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ail---S 107 (306)
T 2ddr_A 31 TERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNLKKEYPNQTAVLGRSSGSEWDKTLGNYSSSTPEDGGVAIV---S 107 (306)
T ss_dssp HHHHHHHHHCSTTCSCSEEEEEEECCHHHHHHHHHHHTTTCCEECCCTTSCCSTTSSEEEESCCTTCSSCCCCEEE---E
T ss_pred HHHHHHHHHHhhccCCCEEEEEeecCHHHHHHHHHHHhhhCCceeeccCcccccccccccccccccCccCCeEEEE---E
Confidence 6788888888888999999999997632 22222221 1 232222211 12356799999 6
Q ss_pred CceeeeEeEEecccccccccCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCcEEEEEEEeecC
Q 047989 80 CAELLVEDRIYYNELVNSIKDGSSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKG 159 (223)
Q Consensus 80 r~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~~~~~~~l~~~~ 159 (223)
|++++....+.++... .|. . ...| .++++.++..
T Consensus 108 r~pi~~~~~~~~~~~~-----------------------------~~~---------~-----~~~r--~~~~~~i~~~- 141 (306)
T 2ddr_A 108 KWPIAEKIQYVFAKGC-----------------------------GPD---------N-----LSNK--GFVYTKIKKN- 141 (306)
T ss_dssp SSCEEEEEEEECSCCC-----------------------------------------------CCCC--EEEEEEEEET-
T ss_pred CCCcccccEEEcCCCC-----------------------------Ccc---------h-----hcCC--CeEEEEEEeC-
Confidence 7999987777664310 010 0 1234 4677888764
Q ss_pred CCCcEEEEEeeeeecCC------CCCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCC
Q 047989 160 PFDHVVIVATTHLYWDP------ELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVP 220 (223)
Q Consensus 160 ~~~~~~~V~ntHL~~~~------~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p 220 (223)
+ ..+.|+||||.+.. .....|..|++.|.+.+++.. ...+.|+|||||||+.|
T Consensus 142 -g-~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~------~~~~~pvil~GDfN~~~ 200 (306)
T 2ddr_A 142 -D-RFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNKN------IPNNEYVLIGGDMNVNK 200 (306)
T ss_dssp -T-EEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHHT------CCTTSCEEEEEECCCCC
T ss_pred -C-EEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhc------CCCCCEEEEEeeCCCCc
Confidence 3 56899999998652 123569999999988887641 12357999999999999
No 15
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=99.72 E-value=1.4e-16 Score=130.55 Aligned_cols=138 Identities=22% Similarity=0.187 Sum_probs=88.9
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEeeecCCc--CcccccccCCCcEEEEccCCCCeeeEEEEEecCCceeeeEeEEecccc
Q 047989 17 KWKNRSDAVLTVLKSFGADFLCLQELDNED--FYKGNMETEGYSSLYIQRSGQKRDGCGIFYKISCAELLVEDRIYYNEL 94 (223)
Q Consensus 17 ~w~~R~~~i~~~I~~~~pDIi~LQEv~~~~--~l~~~L~~~gY~~~~~~~~~~~~~G~ai~~~~sr~~i~~~~~i~~~~~ 94 (223)
.|..|.+.|+++|++.+||||||||+.... .....+...||.+++.. ..+..|+||++| +++..... .++..
T Consensus 10 ~~~~~~~~i~~~i~~~~~DIv~LQE~~~~~~~~~~~~~~~~gy~~~~~~--~~~~~G~ailsr---~~~~~~~~-~~~~~ 83 (256)
T 2jc4_A 10 SLNVRLPQVQNLLADNPPDILVLQELKLDQDKFPAAALQMMGWHCVWSG--QKTYNGVAIVSR---SVPQDVHF-GLPAL 83 (256)
T ss_dssp CHHHHHHHHHHHHHSSCCSEEEEECCCSCGGGSCHHHHHTTTCEEEEEC--CSSSCCEEEEES---SCCEEEEE-SCTTS
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEEeeccchhcCCHhHHhhcCCeEEECC--CCcceEEEEEEC---CChHHhee-cCCCC
Confidence 477888999999999999999999998654 33334555689877653 235679999965 45553322 12110
Q ss_pred cccccCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCcEEEEEEEeecCCCCcEEEEEeeeeec
Q 047989 95 VNSIKDGSSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVATTHLYW 174 (223)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~~V~ntHL~~ 174 (223)
. . + ...| ++.+.+ + . +.|+|+|+..
T Consensus 84 ~------------------------------~---------~------~~~~---~~~~~~-----~-~-~~v~~~h~~~ 108 (256)
T 2jc4_A 84 P------------------------------D---------D------PQRR---VIAATV-----S-G-VRVINVYCVN 108 (256)
T ss_dssp T------------------------------T---------C------CSCC---EEEEEE-----T-T-EEEEEEECCC
T ss_pred c------------------------------c---------C------CcCc---EEEEEe-----C-C-EEEEEEEecC
Confidence 0 0 0 1113 223332 1 4 7999999975
Q ss_pred CCCCCc----hhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCCCC
Q 047989 175 DPELAD----VKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVPGD 222 (223)
Q Consensus 175 ~~~~~~----~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p~s 222 (223)
...... .|..|++.|.+.++++.. .+.|+|||||||+.|.+
T Consensus 109 ~~~~~~~~~~~r~~~~~~l~~~~~~~~~-------~~~~~il~GDFN~~~~~ 153 (256)
T 2jc4_A 109 GEALDSPKFKYKEQWFAALTEFVRDEMT-------RHGKLVLLGDFNIAPAD 153 (256)
T ss_dssp CCSTTSHHHHHHHHHHHHHHHHHHHHHT-------TCSSEEEEEECCCCCSG
T ss_pred CCCCCcHhHHHHHHHHHHHHHHHHHHhc-------CCCCEEEEeECCCCCch
Confidence 432122 256677777777766521 36799999999999874
No 16
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=99.68 E-value=5.8e-16 Score=128.44 Aligned_cols=144 Identities=12% Similarity=0.155 Sum_probs=89.1
Q ss_pred HHHHHHHhc--CCCcEEEEeeecCCc-----Cccccccc---CCCcEEEEccCC--CCeeeEEEEEecCCceeeeEeEEe
Q 047989 23 DAVLTVLKS--FGADFLCLQELDNED-----FYKGNMET---EGYSSLYIQRSG--QKRDGCGIFYKISCAELLVEDRIY 90 (223)
Q Consensus 23 ~~i~~~I~~--~~pDIi~LQEv~~~~-----~l~~~L~~---~gY~~~~~~~~~--~~~~G~ai~~~~sr~~i~~~~~i~ 90 (223)
..+++.|.+ .+|||||||||+... .+...|.. .+|.++.....+ ...++++++|+++++.+++...
T Consensus 19 ~~~~~~i~~~~~~~DIv~LQEv~~~~~~~~~~l~~~L~~~~~~~y~~v~~~~~~~~~~~~~~~~ly~~~~v~~~~~~~-- 96 (260)
T 2a40_B 19 ATLASYIVRIVRRYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSEPLGRNSYKERYLFLFRPNKVSVLDTYQ-- 96 (260)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEECCTTSHHHHHHHHHHTSSSTTSCEEEECCCBCSSSCCBEEEEEECTTTCEEEEEEE--
T ss_pred HHHHHHHHHHhccCCEEEEEEEEcCchhHHHHHHHHHHhccCCCcEEEEcccCCCCCCcEEEEEEEcCceeEecCcee--
Confidence 344444443 289999999998742 34444532 347776654433 2457899999999998887632
Q ss_pred cccccccccCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCcEEEEEEEeecCCCCcEEEEEee
Q 047989 91 YNELVNSIKDGSSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVATT 170 (223)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~~V~nt 170 (223)
++... . .+.+ ..+.|. .+++.++...++++.|.|+|+
T Consensus 97 ~~~~~--------------------~---~~~~------------------~~~~R~--p~~~~~~~~~~~g~~~~vi~~ 133 (260)
T 2a40_B 97 YDDGC--------------------E---SCGN------------------DSFSRE--PAVVKFSSHSTKVKEFAIVAL 133 (260)
T ss_dssp CCTTS--------------------T---TTHH------------------HHCSSC--CEEEEEECTTSSSSEEEEEEC
T ss_pred ccCCC--------------------c---CCCC------------------CceeeC--CEEEEEEeCCCCCceEEEEEe
Confidence 32210 0 0000 022343 355677766442356899999
Q ss_pred eeecCCCCCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCCC
Q 047989 171 HLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVPG 221 (223)
Q Consensus 171 HL~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p~ 221 (223)
||.+. .+.+|++.|.+.++.+.+.. ...|+|||||||+.|.
T Consensus 134 Hl~~~-----~~~~q~~~l~~~~~~~~~~~-----~~~~vil~GDfN~~~~ 174 (260)
T 2a40_B 134 HSAPS-----DAVAEINSLYDVYLDVQQKW-----HLNDVMLMGDFNADCS 174 (260)
T ss_dssp CCCGG-----GHHHHHHHHHHHHHHHHHHH-----CCCCEEEEEECCCSTT
T ss_pred cCCCC-----CcHHHHHHHHHHHHHHHHhC-----CCCCEEEEecCCCCCc
Confidence 99853 23457777777776654321 3579999999999887
No 17
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=99.66 E-value=7.4e-16 Score=126.40 Aligned_cols=132 Identities=16% Similarity=0.200 Sum_probs=80.8
Q ss_pred HHHHHHhcCCCcEEEEeeecCCc-Cccccc-ccCCCcEEEEccCCCCeeeEEEEEecCCceeeeEeEEecccccccccCC
Q 047989 24 AVLTVLKSFGADFLCLQELDNED-FYKGNM-ETEGYSSLYIQRSGQKRDGCGIFYKISCAELLVEDRIYYNELVNSIKDG 101 (223)
Q Consensus 24 ~i~~~I~~~~pDIi~LQEv~~~~-~l~~~L-~~~gY~~~~~~~~~~~~~G~ai~~~~sr~~i~~~~~i~~~~~~~~~~~~ 101 (223)
.++++|..++||||||||+.... .+...+ ...||.+++......+..|+|||+| +++..... .++...
T Consensus 19 ~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~~~gy~~~~~~~~~~~~~G~ailsr---~~~~~~~~-~~~~~~------ 88 (259)
T 2jc5_A 19 GFYEYIAASGADIVCVQELKAQEADLSADMKNPHGMHGHWHCAEKRGYSGVAVYSK---RKPDNVQI-GMGIEE------ 88 (259)
T ss_dssp THHHHHHHTTCSEEEEECCCCCGGGCCHHHHSGGGCEEEEECCSSTTCCCEEEEES---SCCSEEEE-SCSCHH------
T ss_pred HHHHHHHhcCCCEEEEEEecchhhccChhhccccCCeEEEeccCCCCcceEEEEEe---cCceeEEe-CCCCCc------
Confidence 39999999999999999998644 333333 2348987776433345689999965 45544322 111000
Q ss_pred CCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCcEEEEEEEeecCCCCcEEEEEeeeeecCCCCCch
Q 047989 102 SSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVATTHLYWDPELADV 181 (223)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~~V~ntHL~~~~~~~~~ 181 (223)
+. ...| ++.+. . .. +.|+|+|+.+... ...
T Consensus 89 ------------------------~~---------------~~~r---~~~~~--~----~~-~~v~~~h~~~~~~-~~~ 118 (259)
T 2jc5_A 89 ------------------------FD---------------REGR---FVRCD--F----GR-LSVISLYLPSGSS-AEE 118 (259)
T ss_dssp ------------------------HH---------------TTCC---EEEEE--E----TT-EEEEEEECCCCTT-CHH
T ss_pred ------------------------cC---------------CCCe---EEEEE--c----CC-EEEEEEeccCCCC-CcH
Confidence 00 0113 23332 2 24 6999999986542 234
Q ss_pred hH----HHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCCCC
Q 047989 182 KL----AQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVPGD 222 (223)
Q Consensus 182 R~----~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p~s 222 (223)
|. .|++.|.+.+++..+ .+.|+|+|||||+.|.+
T Consensus 119 r~~~~~~~~~~l~~~~~~~~~-------~~~~~Il~GDFN~~~~~ 156 (259)
T 2jc5_A 119 RQQVKYRFLDAFYPMLEAMKN-------EGRDIVVCGDWNIAHQN 156 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------TCSEEEEEEECCCCCSG
T ss_pred HHHHHHHHHHHHHHHHHHHHh-------cCCCEEEEeeCCCCCch
Confidence 54 456666666655432 35799999999998754
No 18
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=99.65 E-value=2.6e-15 Score=121.48 Aligned_cols=60 Identities=18% Similarity=0.288 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeeecCCc-CcccccccCCCcEEEEccCCCCeeeEEEEEecC
Q 047989 19 KNRSDAVLTVLKSFGADFLCLQELDNED-FYKGNMETEGYSSLYIQRSGQKRDGCGIFYKIS 79 (223)
Q Consensus 19 ~~R~~~i~~~I~~~~pDIi~LQEv~~~~-~l~~~L~~~gY~~~~~~~~~~~~~G~ai~~~~s 79 (223)
..|+..++++|..++||||||||+.... .+. .+...||.+++......+..|+|||+|..
T Consensus 21 ~~~~~~~~~~i~~~~~DIv~LQE~~~~~~~~~-~l~~~~y~~~~~~~~~~~~~Gvail~r~~ 81 (238)
T 1vyb_A 21 AIKRHRLASWIKSQDPSVCCIQETHLTCRDTH-RLKIKGWRKIYQANGKQKKAGVAILVSDK 81 (238)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCCCCTTSGG-GCCCTTCCEEEEECCSSSSCCEEEEECTT
T ss_pred hhhHHHHHHHHHHcCCCEEEEecccCCCCCch-hHhhCCCCeEEEccCCCCCceEEEEEeCC
Confidence 4566889999999999999999996533 222 23334888765433223456999998764
No 19
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=99.59 E-value=1.1e-14 Score=121.58 Aligned_cols=129 Identities=17% Similarity=0.210 Sum_probs=76.2
Q ss_pred HHHHHhcCCCcEEEEeeecCCc-Ccccccc-cCCCc-EEEEc-cCCCCeeeEEEEEecCCceeeeEeEEecccccccccC
Q 047989 25 VLTVLKSFGADFLCLQELDNED-FYKGNME-TEGYS-SLYIQ-RSGQKRDGCGIFYKISCAELLVEDRIYYNELVNSIKD 100 (223)
Q Consensus 25 i~~~I~~~~pDIi~LQEv~~~~-~l~~~L~-~~gY~-~~~~~-~~~~~~~G~ai~~~~sr~~i~~~~~i~~~~~~~~~~~ 100 (223)
++++|..++||||||||+.... .+...|. ..||. .++.. ....+..|+|||+|...+.+. . .+....
T Consensus 47 i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~~~gy~~~~~~~~~~~~g~~Gvailsr~~~~~~~---~-~~~~~~----- 117 (285)
T 2o3h_A 47 GLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVS---Y-GIGDEE----- 117 (285)
T ss_dssp HHHHHHHHCCSEEEEECCCCCTTSCCGGGGGCGGGCEEEEECBC--CCSCCEEEEESSCCSEEE---E-SCSCGG-----
T ss_pred HHHHHHhcCCCEEEEEEeecchhhccHHHHhccCCcEEEEecccCCcccceEEEEEccChHHee---e-ccCCcc-----
Confidence 8999999999999999998643 3332333 34784 44443 222345699999764433221 1 111000
Q ss_pred CCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCcEEEEEEEeecCCCCcEEEEEeeeeecCCCCC-
Q 047989 101 GSSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVATTHLYWDPELA- 179 (223)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~~V~ntHL~~~~~~~- 179 (223)
+. ...| ++.+.+ .. +.|+|+|+.......
T Consensus 118 -------------------------~~---------------~~~r---~l~~~~------~~-~~v~~~h~p~~~~~~~ 147 (285)
T 2o3h_A 118 -------------------------HD---------------QEGR---VIVAEF------DS-FVLVTAYVPNAGRGLV 147 (285)
T ss_dssp -------------------------GS---------------SBCC---EEEEEC------SS-CEEEEEECCCCCGGGT
T ss_pred -------------------------cC---------------CCCc---EEEEEe------CC-EEEEEEEcCCCCCcch
Confidence 00 1124 223221 24 699999996432110
Q ss_pred --chhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCC
Q 047989 180 --DVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVP 220 (223)
Q Consensus 180 --~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p 220 (223)
..|..|++.|.+.++++. ...|+|||||||..+
T Consensus 148 ~~~~r~~~~~~l~~~l~~~~--------~~~p~Il~GDFN~~~ 182 (285)
T 2o3h_A 148 RLEYRQRWDEAFRKFLKGLA--------SRKPLVLCGDLNVAH 182 (285)
T ss_dssp THHHHHHHHHHHHHHHHHHH--------TTSCEEEEEECSCCC
T ss_pred hHHHHHHHHHHHHHHHHhhc--------cCCCEEEEEECCCCC
Confidence 126678888888777653 247999999999865
No 20
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=99.58 E-value=2.1e-14 Score=118.94 Aligned_cols=55 Identities=24% Similarity=0.455 Sum_probs=40.8
Q ss_pred HHHHHHhcCCCcEEEEeeecCCc-Ccccccc-cCCCcEEEEccCCCCeeeEEEEEec
Q 047989 24 AVLTVLKSFGADFLCLQELDNED-FYKGNME-TEGYSSLYIQRSGQKRDGCGIFYKI 78 (223)
Q Consensus 24 ~i~~~I~~~~pDIi~LQEv~~~~-~l~~~L~-~~gY~~~~~~~~~~~~~G~ai~~~~ 78 (223)
.++++|...+||||||||+.... .+...+. ..||..++.....++..|+|||+|.
T Consensus 21 ~l~~~i~~~~~DIv~LQEt~~~~~~~~~~~~~~~gy~~~~~~~~~~~~~Gvail~k~ 77 (265)
T 3g91_A 21 GFLKWFMEEKPDILCLQEIKAAPEQLPRKLRHVEGYRSFFTPAERKGYSGVAMYTKV 77 (265)
T ss_dssp THHHHHHHHCCSEEEEECCCSCGGGSCHHHHCCTTCEEEEECBSSTTSCCEEEEESS
T ss_pred hHHHHHHhcCCCEEEEEeccccccccChhhhcccCCcEEEccCCCCCcCEEEEEEec
Confidence 48999999999999999997644 3333332 4689977765544566899999764
No 21
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=99.57 E-value=5.1e-14 Score=115.48 Aligned_cols=58 Identities=26% Similarity=0.439 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeeecCCc-Ccc-cccccCCCcEEEEccCCCCeeeEEEEEec
Q 047989 19 KNRSDAVLTVLKSFGADFLCLQELDNED-FYK-GNMETEGYSSLYIQRSGQKRDGCGIFYKI 78 (223)
Q Consensus 19 ~~R~~~i~~~I~~~~pDIi~LQEv~~~~-~l~-~~L~~~gY~~~~~~~~~~~~~G~ai~~~~ 78 (223)
..|.+.++++|+.++||||||||+.... .+. ..+...||..++.. ..+..|+|||+|.
T Consensus 13 ~~~~~~i~~~i~~~~~Dii~lQE~~~~~~~~~~~~~~~~gy~~~~~~--~~~~~G~ailsr~ 72 (257)
T 2voa_A 13 RSRLHIVIPWLKENKPDILCMQETKVENRKFPEADFHRIGYHVVFSG--SKGRNGVAIASLE 72 (257)
T ss_dssp GGTHHHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHTTTCEEEEEE--ETTEEEEEEEESS
T ss_pred HHHHHHHHHHHhhcCCCEEEEEEeecchhhcCHHHhhhCCCcEEEcC--CCCccEEEEEEcc
Confidence 3456789999999999999999997533 221 23344589876643 2356799999653
No 22
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=99.55 E-value=2.7e-14 Score=121.83 Aligned_cols=130 Identities=17% Similarity=0.201 Sum_probs=73.1
Q ss_pred HHHHHhcCCCcEEEEeeecCCc-Ccccccc-cCCC-cEEEEc-cCCCCeeeEEEEEecCCceeeeEeEEecccccccccC
Q 047989 25 VLTVLKSFGADFLCLQELDNED-FYKGNME-TEGY-SSLYIQ-RSGQKRDGCGIFYKISCAELLVEDRIYYNELVNSIKD 100 (223)
Q Consensus 25 i~~~I~~~~pDIi~LQEv~~~~-~l~~~L~-~~gY-~~~~~~-~~~~~~~G~ai~~~~sr~~i~~~~~i~~~~~~~~~~~ 100 (223)
++++|..++||||||||+.... .+...|. ..|| ..++.. ....+..|+|||+|. ++++... .+....
T Consensus 80 i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~~~gy~~~~~~~~~~~~g~~Gvailsr~---~~~~~~~-~~~~~~----- 150 (318)
T 1hd7_A 80 GLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQ---CPLKVSY-GIGDEE----- 150 (318)
T ss_dssp HHHHHHHHCCSEEEEECCCCCC-----------CCCEEEEECC-----CCCEEEEESS---CCSEEEE-SCSCGG-----
T ss_pred HHHHHHhhCCCEEEEEEccCchhhccHHHHhcCCCceEEEecCCCCCccceEEEEEcC---CceeEEe-cCCCcc-----
Confidence 8999999999999999997643 2322232 3588 444443 212345699999654 4433211 111000
Q ss_pred CCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCcEEEEEEEeecCCCCcEEEEEeeeeecCCCCC-
Q 047989 101 GSSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVATTHLYWDPELA- 179 (223)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~~V~ntHL~~~~~~~- 179 (223)
+. ...| ++.+.+ .. +.|+|+|+.......
T Consensus 151 -------------------------~~---------------~~~r---~l~~~~------~~-~~v~~vh~p~~~~~~~ 180 (318)
T 1hd7_A 151 -------------------------HD---------------QEGR---VIVAEF------DS-FVLVTAYVPNAGRGLV 180 (318)
T ss_dssp -------------------------GS---------------SSSC---EEEEEC------SS-CEEEEEECCCCCGGGT
T ss_pred -------------------------cC---------------CCCc---EEEEEc------CC-EEEEEEEcCCCCCccc
Confidence 00 1124 233322 23 699999996432110
Q ss_pred --chhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCCC
Q 047989 180 --DVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVPG 221 (223)
Q Consensus 180 --~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p~ 221 (223)
..|..|+..|.+.++.+.. ..|+|||||||..|.
T Consensus 181 ~~~~r~~~~~~l~~~l~~~~~--------~~pvIl~GDFN~~~~ 216 (318)
T 1hd7_A 181 RLEYRQRWDEAFRKFLKGLAS--------RKPLVLCGDLNVAHE 216 (318)
T ss_dssp THHHHHHHHHHHHHHHHHHHH--------HSCEEEEEECSCCCS
T ss_pred cHHHHHHHHHHHHHHHHhccc--------CCCEEEEeeCCCCCh
Confidence 1367888888888877632 268999999998774
No 23
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.54 E-value=7e-14 Score=114.58 Aligned_cols=62 Identities=10% Similarity=-0.090 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhcCCCcEEEEeeecCCc-CcccccccCCCcEEEEccCCCCeeeEEEEEecCCcee
Q 047989 20 NRSDAVLTVLKSFGADFLCLQELDNED-FYKGNMETEGYSSLYIQRSGQKRDGCGIFYKISCAEL 83 (223)
Q Consensus 20 ~R~~~i~~~I~~~~pDIi~LQEv~~~~-~l~~~L~~~gY~~~~~~~~~~~~~G~ai~~~~sr~~i 83 (223)
.+...++++|...+||||||||+.... ..... ..||..++......+..|+|||+++.++++
T Consensus 32 ~~~~~l~~~i~~~~~DIv~lQE~~~~~~~~~~~--~~gy~~~~~~~~~~~~~GvaIl~~~~~~~~ 94 (245)
T 1wdu_A 32 LATAELAIEAATRKAAIALIQEPYVGGAKSMKG--FRGVRVFQSTAQGDGTVKAAIAVFDHDLDV 94 (245)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESCCC------CC--CSSCEEEECCCCTTCCCCEEEEECCSSCEE
T ss_pred HHHHHHHHHHhhcCCCEEEEEcccccCCccccC--CCcceEeccccccCCCCCeEEEEECCCcce
Confidence 346789999999999999999997643 11111 237875543221234679999998767776
No 24
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=99.44 E-value=1.3e-12 Score=117.45 Aligned_cols=57 Identities=23% Similarity=0.281 Sum_probs=40.2
Q ss_pred HHHHHHHhcCCCcEEEEeeecCCc-Ccc--cccc-cCCCcEEEEccC-CCCeeeEEEEEecC
Q 047989 23 DAVLTVLKSFGADFLCLQELDNED-FYK--GNME-TEGYSSLYIQRS-GQKRDGCGIFYKIS 79 (223)
Q Consensus 23 ~~i~~~I~~~~pDIi~LQEv~~~~-~l~--~~L~-~~gY~~~~~~~~-~~~~~G~ai~~~~s 79 (223)
..|+++|..++||||||||+.... .+. ..|. ..||.+++.... ..+..|+|||+|..
T Consensus 169 ~~i~~~I~~~~pDIVcLQEtk~~~~~~~~~~~la~~~GY~~~~~~~~~~~g~~GVAIlsR~p 230 (467)
T 2j63_A 169 SALRAFMEAEKPDVLCLQETKLNVDEADANATLGVVDGYSFVDHPCAFKRGYSGTRTYMKNS 230 (467)
T ss_dssp THHHHHHHHHCCSEEEEECCCCCTTCHHHHHTSSCCTTEEEEEECCSSSTTSCCEEEEEECC
T ss_pred HHHHHHHHHcCCCEEEEEecccchhccchHHHHhhcCCceEEEecccCCCCcceEEEEEeCC
Confidence 469999999999999999997543 221 1243 358987665432 34568999997754
No 25
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=99.40 E-value=1.8e-12 Score=106.76 Aligned_cols=127 Identities=14% Similarity=0.042 Sum_probs=83.9
Q ss_pred HHHHHHhcCC-CcEEEEeeecCC------------c---CcccccccCC------CcEEEEccC--CCCeeeEEEEEecC
Q 047989 24 AVLTVLKSFG-ADFLCLQELDNE------------D---FYKGNMETEG------YSSLYIQRS--GQKRDGCGIFYKIS 79 (223)
Q Consensus 24 ~i~~~I~~~~-pDIi~LQEv~~~------------~---~l~~~L~~~g------Y~~~~~~~~--~~~~~G~ai~~~~s 79 (223)
.+.+.|...+ +||++|||++.. . .+.+.+...| +.++|..+. +..+.|+||+ |
T Consensus 37 ~v~~lI~~~~~~DIvaLQEag~~p~sa~~t~R~~~~~g~~v~E~~w~lGt~srp~~~yiY~~~~D~~~~r~nlAIl---S 113 (262)
T 2f1n_A 37 NVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPVRELIWNLSTNSRPQQVYIYFSAVDALGGRVNLALV---S 113 (262)
T ss_dssp HHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCCEEEEEECCSSSSSCEEEEEEECSCSSSCSSCEEEE---E
T ss_pred cHHHHHccCCCCCEEEEeecCCcCcccccccccccCCCcCHHHHHHHhCCCCCCceEEEEEeeccCCCCceeeEEE---E
Confidence 3566888887 999999999842 1 2233333445 777776543 4578899999 5
Q ss_pred CceeeeEeEEecccccccccCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCcEEEEEEEeecC
Q 047989 80 CAELLVEDRIYYNELVNSIKDGSSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKG 159 (223)
Q Consensus 80 r~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~~~~~~~l~~~~ 159 (223)
|+++.+ .+.++.. . + . .|. .+-+++
T Consensus 114 r~~ade--v~vLp~~---------------------------~---~----------------~-~Rp--~lgiri---- 138 (262)
T 2f1n_A 114 NRRADE--VFVLSPV---------------------------R---Q----------------G-GRP--LLGIRI---- 138 (262)
T ss_dssp SSCCSE--EEEECCS---------------------------S---T----------------T-CCC--EEEEEE----
T ss_pred cccccc--eEECCCC---------------------------C---C----------------C-CCc--eEEEEE----
Confidence 677663 2323210 0 0 1 252 233443
Q ss_pred CCCcEEEEEeeeeecCCCCCchhHHHHHHHHHHHHHHHHHhccCCCCC-----CcEEEeccCCCCCCC
Q 047989 160 PFDHVVIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCV-----PSVIVAGDFNSVPGD 222 (223)
Q Consensus 160 ~~~~~~~V~ntHL~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~-----~pvIl~GDFN~~p~s 222 (223)
+ . .+++|||+.+. ++..|.+|++.+.+.+... .. .|.|||||||..|.|
T Consensus 139 -~-~-~~ff~tHa~a~--~g~da~a~v~~I~~~~~~~---------~~~~~~~~pwii~GDFNr~P~s 192 (262)
T 2f1n_A 139 -G-N-DAFFTAHAIAM--RNNDAPALVEEVYNFFRDS---------RDPVHQALNWMILGDFNREPAD 192 (262)
T ss_dssp -T-T-EEEEEEECCSS--SSCSHHHHHHHHHHHHHTC---------SSHHHHTCEEEEEEECSSCHHH
T ss_pred -C-C-EEEEEEEecCC--CCccHHHHHHHHHHHHhcC---------cccccCCCcEEEEecCCCCCcc
Confidence 2 4 59999999987 4566888988887776652 23 599999999999975
No 26
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.31 E-value=1.5e-11 Score=101.95 Aligned_cols=52 Identities=19% Similarity=0.179 Sum_probs=34.0
Q ss_pred EEEEeeeeecCCCCCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCCC
Q 047989 165 VIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVPG 221 (223)
Q Consensus 165 ~~V~ntHL~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p~ 221 (223)
+.|++||+... +...+.+|++.|.+.+..... +......|.||+||||+.|.
T Consensus 132 ~~f~s~Hl~~~--~~~ea~~~v~~I~~~~~~~~~---~~~~~~~~~ii~GDFN~~p~ 183 (261)
T 1sr4_B 132 DVFFTVHALAT--GGSDAVSLIRNIFTTFNSSSS---PPERRVYSWMVVGDFNRAPA 183 (261)
T ss_dssp EEEEEEECCTT--TTTTHHHHHHHHHHHHHC------CGGGGGCEEEEEEECSSCHH
T ss_pred eEEEEeCCCCC--CCchHHHHHHHHHHHHHhccc---CCcccCCcEEEEeeCCCChh
Confidence 69999999865 345577787776665544200 00001169999999999874
No 27
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=99.29 E-value=8.9e-13 Score=111.15 Aligned_cols=63 Identities=13% Similarity=-0.002 Sum_probs=44.9
Q ss_pred EEEEEEEeecCCCCcEEEEEeeeeecCCCCCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCCCC
Q 047989 149 VGIMAAFRLKGPFDHVVIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVPGD 222 (223)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~V~ntHL~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p~s 222 (223)
.++.+++... + ..|+++|+||..+......|..|++.|++.++.. ....|+|+|||||..+++
T Consensus 116 Gav~~r~~~~--~-~~~~fvn~HL~~~~~~~~~R~~~~~~I~~~~~~~--------~~~~~vi~~GDfN~r~~~ 178 (282)
T 2imq_X 116 GGIVTSFTIY--N-KRFSFTTSRMSDEDVTSTNTKYAYDTRLDYSKKD--------DPSDFLFWIGDLNVRVET 178 (282)
T ss_dssp EEEEEEEEET--T-EEEEEEEEECCTTCCCTTSSSSSCCGGGCTTSSS--------SCCSEEEEEEECSCCBCS
T ss_pred ceEEEEEEEC--C-EEEEEEEECCCCCCchHHHHHHHHHHHHHhhhcc--------CccceEEEecccccccCC
Confidence 4667777764 3 5689999999987543456777887776554321 245789999999987664
No 28
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=99.11 E-value=5.2e-10 Score=91.91 Aligned_cols=50 Identities=14% Similarity=0.284 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCCCcEEEEeeecCCcCcccccccCCCcEEEEccCCCCeeeEEEEEecCCcee
Q 047989 20 NRSDAVLTVLKSFGADFLCLQELDNEDFYKGNMETEGYSSLYIQRSGQKRDGCGIFYKISCAEL 83 (223)
Q Consensus 20 ~R~~~i~~~I~~~~pDIi~LQEv~~~~~l~~~L~~~gY~~~~~~~~~~~~~G~ai~~~~sr~~i 83 (223)
.|.+.++++|.+.+||||||||+.. . .||+ + . +.+..|+||++++...++
T Consensus 20 ~~~~~l~~~l~~~~~DIl~LQEt~~-------~--~gy~-~-~---~~~~~gvail~~~~~~~~ 69 (240)
T 2ei9_A 20 DATRELPSIARDLGLDIVLVQEQYS-------M--VGFL-A-Q---CGAHPKAGVYIRNRVLPC 69 (240)
T ss_dssp HHHHTHHHHHHHHTCSEEEEESCCT-------T--SSSE-E-C---CSSSCSEEEEESSTTSCE
T ss_pred HHHHHHHHHHHHcCCCEEEeecceE-------c--CCce-E-e---ccCCCCEEEEEecCCcce
Confidence 4567799999999999999999952 1 2676 2 2 234689999987544443
No 29
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=98.91 E-value=4.5e-09 Score=90.96 Aligned_cols=66 Identities=23% Similarity=0.168 Sum_probs=43.8
Q ss_pred EEEEEEEeecCCCCcEEEEEeeeeecCCCCCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCC
Q 047989 149 VGIMAAFRLKGPFDHVVIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVP 220 (223)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~V~ntHL~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p 220 (223)
.++.+.+... +..|+++|+||..+....+.|..|...|++.+. +.. ........++|+|||||...
T Consensus 147 Gav~vr~~~~---~~~l~fvn~HLaa~~~~~~~R~~d~~~I~~~l~-f~~--~~~i~~~d~v~~~GDlNyRi 212 (347)
T 1i9z_A 147 GAVAIRFDYE---DTGLCFITSHLAAGYTNYDERDHDYRTIASGLR-FRR--GRSIFNHDYVVWFGDFNYRI 212 (347)
T ss_dssp EEEEEEEEET---TEEEEEEEEECCCCSSCHHHHHHHHHHHHHHCC-CGG--GCCTTSSSEEEEEEECCCCB
T ss_pred ceEEEEEEEC---CeEEEEEEecCCCCCccHHHHHHHHHHHHHhhc-cCc--ccccccCccEEEeccccccc
Confidence 4677777775 356899999999875444568888888876543 100 00112346899999999544
No 30
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=98.74 E-value=1.3e-08 Score=88.30 Aligned_cols=70 Identities=17% Similarity=0.108 Sum_probs=44.8
Q ss_pred EEEEEEEeecCCCCcEEEEEeeeeecCCCCCchhHHHHHHHHHHHHHHHHHhc----------cCCCCCCcEEEeccCCC
Q 047989 149 VGIMAAFRLKGPFDHVVIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVS----------DRYDCVPSVIVAGDFNS 218 (223)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~V~ntHL~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~----------~~~~~~~pvIl~GDFN~ 218 (223)
.++.+.+... +..|+++|+||..+......|..|...|++.+.- ..... .......++|++||||.
T Consensus 132 Gav~vr~~~~---~t~~~Fvn~HLaa~~~~~~~Rn~d~~~I~~~l~f-~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNy 207 (357)
T 2xsw_A 132 GALGISFTFF---GTSFLFITSHFTSGDGKVAERLLDYTRTVQALVL-PRNVPDTNPYRSSAADVTTRFDEVFWFGDFNF 207 (357)
T ss_dssp EEEEEEEEET---TEEEEEEEEECCCSTTCHHHHHHHHHHHHHHCCC-CSSSCCSSGGGCBTTBGGGSSSEEEEEEECCC
T ss_pred cEEEEEEEEC---CeEEEEEEEccCCCCchHHHHHHHHHHHHHHhcc-cccccccccccccccccccccceEEEecccCc
Confidence 4566677764 3568999999998764445688888877765531 00000 00012368999999998
Q ss_pred CCCC
Q 047989 219 VPGD 222 (223)
Q Consensus 219 ~p~s 222 (223)
..+.
T Consensus 208 Ri~~ 211 (357)
T 2xsw_A 208 RLSG 211 (357)
T ss_dssp CBSS
T ss_pred cccc
Confidence 7764
No 31
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=98.01 E-value=1.8e-05 Score=67.26 Aligned_cols=68 Identities=19% Similarity=0.203 Sum_probs=39.0
Q ss_pred EEEEEEEeecCCCCcEEEEEeeeeecCCCCCchhHHHHHHHHHHHHHHHHHhc----cCCCCCCcEEEeccCCCCC
Q 047989 149 VGIMAAFRLKGPFDHVVIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVS----DRYDCVPSVIVAGDFNSVP 220 (223)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~V~ntHL~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~----~~~~~~~pvIl~GDFN~~p 220 (223)
.|+.+.+... +..|+++|+||..+....+.|..+...|++.+. +...-. .......-+|++||||..-
T Consensus 124 GaV~ir~~~~---~ts~cFVnsHLaA~~~~~~~Rn~d~~~I~~~l~-f~~~~~~~~~~~i~~~d~vfw~GDLNyRi 195 (313)
T 3mtc_A 124 GGVAIRFQFH---NTSICVVNSHLAAHIEEYERRNQDYKDICSRMQ-FCQPDPSLPPLTISNHDVILWLGDLNYRI 195 (313)
T ss_dssp EEEEEEEEET---TEEEEEEEEECCCSGGGHHHHHHHHHHHHHHCC-BCCSCSSSCCBCTTSSSEEEEEEECCCCB
T ss_pred ceEEEEEEEC---CcEEEEEeeccCCCchHHHHHHHHHHHHHHhcc-cCCCCCccCCccccCCceEEEeccccccc
Confidence 4566677665 256899999998764333456666666654432 000000 0001224599999999754
No 32
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=97.99 E-value=5e-05 Score=64.58 Aligned_cols=137 Identities=13% Similarity=0.054 Sum_probs=75.4
Q ss_pred CCCcEE--EEeeecCCc-----Cccccccc---CCCcEEEEccCCCCeeeEEEEEecCCceeeeEeEEecccccccccCC
Q 047989 32 FGADFL--CLQELDNED-----FYKGNMET---EGYSSLYIQRSGQKRDGCGIFYKISCAELLVEDRIYYNELVNSIKDG 101 (223)
Q Consensus 32 ~~pDIi--~LQEv~~~~-----~l~~~L~~---~gY~~~~~~~~~~~~~G~ai~~~~sr~~i~~~~~i~~~~~~~~~~~~ 101 (223)
..|||+ ||||+.... .+...|.. ..|..+.... -.+..++||.|++..+-+.......-..+
T Consensus 46 ~~~DiyviG~QE~~~~~~~W~~~i~~~L~~~~~~~Y~~v~s~~--L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG------ 117 (316)
T 4a9c_A 46 IPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAMQS--LWNIKVAVLVKPEHENRISHVSTSSVKTG------ 117 (316)
T ss_dssp SCCSEEEEEEESCCSCHHHHHHHHHHHHHHHHSCCCEEEEEEE--ETTEEEEEEECGGGGGGEEEEEEEEEEEC------
T ss_pred CCCcEEEEeccccccchhHHHHHHHHHhccccCCCEEEEEeee--ehheeeeeEEeHHHhhhCcccccceeeee------
Confidence 357887 999997632 34444542 3566554322 25578899988765554443322211110
Q ss_pred CCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccCCcEEEEEEEeecCCCCcEEEEEeeeeecCCCCCch
Q 047989 102 SSCGDDQNNTLAGGNNDSDLKSGSWSKKDSRDHGDLNDPYVRLKRDCVGIMAAFRLKGPFDHVVIVATTHLYWDPELADV 181 (223)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~~V~ntHL~~~~~~~~~ 181 (223)
-+ | ...+..++.+.+... +..|+++|+||..+......
T Consensus 118 -----------------------~~--------g--------~~GNKGaV~ir~~~~---~ts~~FVn~HLaAg~~~~~~ 155 (316)
T 4a9c_A 118 -----------------------IA--------N--------TLGNKGAVGVSFMFN---GTSFGFVNCHLTSGNEKTAR 155 (316)
T ss_dssp ---------------------------------------------CEEEEEEEEEET---TEEEEEEEEECCCSTTCHHH
T ss_pred -----------------------ee--------E--------ecCCCceEEEEEEEC---CcEEEEEEeccccCchHHHH
Confidence 00 0 012224566677764 35689999999987554456
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCC---CCCcEEEeccCCCC
Q 047989 182 KLAQAKYLSSRLAEFRTQVSDRYD---CVPSVIVAGDFNSV 219 (223)
Q Consensus 182 R~~Q~~~l~~~l~~~~~~~~~~~~---~~~pvIl~GDFN~~ 219 (223)
|..+...|++.+.--....+ .++ ...-||++||||-.
T Consensus 156 Rn~d~~~I~~~l~f~~~~~~-~~d~~~~~d~vfw~GDLNyR 195 (316)
T 4a9c_A 156 RNQNYLDILRLLSLGDRQLN-AFDISLRFTHLFWFGDLNYR 195 (316)
T ss_dssp HHHHHHHHHHHCCC--------CCTTTTSSEEEEEEECCCC
T ss_pred HHHHHHHHHHhCCCCCCCcC-ccccCCcCCeEEEcCCccCC
Confidence 88888877765420000000 000 11349999999974
No 33
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=36.62 E-value=77 Score=25.90 Aligned_cols=48 Identities=15% Similarity=0.119 Sum_probs=22.6
Q ss_pred cEEEEEeeeeec---CCCCCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEecc
Q 047989 163 HVVIVATTHLYW---DPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGD 215 (223)
Q Consensus 163 ~~~~V~ntHL~~---~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GD 215 (223)
+++.+.-.||.. .+..+..|..-....++++-+..... ...-||++||
T Consensus 20 rilh~SD~HlG~~~~~~~~~~~r~~~~~~~l~~lv~~~~~~-----~~D~vliaGD 70 (336)
T 2q8u_A 20 KILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKR-----EVDLILLTGD 70 (336)
T ss_dssp EEEEEECCCBTCEECTTTCCEECHHHHHHHHHHHHHHHHHH-----TCSEEEEESC
T ss_pred EEEEECcccCCCCccccccCcChhHHHHHHHHHHHHHHHHh-----CCCEEEECCc
Confidence 456777788862 22122233332222333333222211 2346999999
No 34
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*
Probab=29.30 E-value=65 Score=27.89 Aligned_cols=49 Identities=14% Similarity=0.145 Sum_probs=23.9
Q ss_pred cEEEEEeeeeecCCCCCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCC
Q 047989 163 HVVIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFN 217 (223)
Q Consensus 163 ~~~~V~ntHL~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN 217 (223)
+++.+.-+||.....+......+...+-+.++...+. ...-||++||+=
T Consensus 15 rilhiSDlHLg~~~~~~~~~~d~~~~l~~lv~~~~~~------~~D~VliaGDLf 63 (417)
T 4fbw_A 15 RILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARER------DVDMILLGGDIF 63 (417)
T ss_dssp EEEEECCCCBTTTTTCTTTTTHHHHHHHHHHHHHHHT------TCSEEEECSCCB
T ss_pred EEEEEEcCCCCCcccccccchhHHHHHHHHHHHHHhc------CCCEEEEcCccc
Confidence 4556667898754322211222333333223322221 234699999973
No 35
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=28.59 E-value=67 Score=27.97 Aligned_cols=50 Identities=16% Similarity=0.115 Sum_probs=23.8
Q ss_pred cEEEEEeeeeecCCCCCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCC
Q 047989 163 HVVIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNS 218 (223)
Q Consensus 163 ~~~~V~ntHL~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~ 218 (223)
+++.+.-+||.....+......+...+-..++...+. ...-||++||+=.
T Consensus 34 rilhiSDlHLg~~~~~~~~~~d~~~~l~~ll~~~~~~------~~D~VliaGDlfd 83 (431)
T 3t1i_A 34 KILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQEN------EVDFILLGGDLFH 83 (431)
T ss_dssp EEEEECCCCBTTTSSCTTTTTHHHHHHHHHHHHHHHT------TCSEEEECSCCBS
T ss_pred EEEEEeccCCCCcccccchhhhHHHHHHHHHHHHhhc------CCCEEEEcCcccc
Confidence 4556666898754322211222322322222222211 2346999999743
No 36
>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A*
Probab=25.64 E-value=81 Score=27.86 Aligned_cols=49 Identities=14% Similarity=0.145 Sum_probs=23.9
Q ss_pred cEEEEEeeeeecCCCCCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCC
Q 047989 163 HVVIVATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFN 217 (223)
Q Consensus 163 ~~~~V~ntHL~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN 217 (223)
.++.+.-+||.....+......+...+-..+....+. ...-||++||+=
T Consensus 78 rilhiSDlHLG~~~~~~~~~~d~~~~l~~lv~~~~~~------~~D~VliaGDLf 126 (472)
T 4fbk_A 78 RILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARER------DVDMILLGGDIF 126 (472)
T ss_dssp EEEEECCCCBTTTTTCTTTTTHHHHHHHHHHHHHHHT------TCSEEEECSCSB
T ss_pred EEEEEecccCCCcccCcccchhHHHHHHHHHHHHHhc------CCCEEEEcCccc
Confidence 5667777899754322111122222222222222211 234699999973
No 37
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=25.61 E-value=75 Score=26.74 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=24.6
Q ss_pred EEEEEeeeeecCC---CCCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCC
Q 047989 164 VVIVATTHLYWDP---ELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFN 217 (223)
Q Consensus 164 ~~~V~ntHL~~~~---~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN 217 (223)
++.+.-+||...+ ..+..|.......++.+.+..... ...-||++||+=
T Consensus 3 ilh~SD~Hlg~~~~~~~~g~~~~~~~~~~l~~l~~~~~~~-----~~D~vliaGDl~ 54 (379)
T 3tho_B 3 ILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKR-----EVDLILLTGDLL 54 (379)
T ss_dssp EEEECCCCBTCEECSSSSCEECHHHHHHHHHHHHHHHHHH-----TCSEEEECSCCB
T ss_pred EEEEcccCCCCCccccccCcChhHHHHHHHHHHHHHHHhc-----CCCEEEECCCcc
Confidence 3556667776431 122234443344444444432221 234699999975
No 38
>2p8i_A Putative dioxygenase; YP_555069.1, structural genomics, JOIN for structural genomics, JCSG, protein structure initiative oxidoreductase; HET: MSE CIT; 1.40A {Burkholderia xenovorans} SCOP: d.58.55.1 PDB: 2nyh_A*
Probab=25.14 E-value=99 Score=21.81 Aligned_cols=43 Identities=19% Similarity=0.318 Sum_probs=30.0
Q ss_pred EEeeeeecCCCCCchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCCCCCCC
Q 047989 167 VATTHLYWDPELADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNSVPGDK 223 (223)
Q Consensus 167 V~ntHL~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~~p~s~ 223 (223)
-.-.|.+++ .....+|+.|.+.+.+. ++ ..|-+|-||..|=.|
T Consensus 12 ~yHaHVYfd----~~~~~~A~~Lre~i~~~-------F~---~~l~vgr~~~~pVGP 54 (117)
T 2p8i_A 12 SWHAHVYFD----ASSRDAAWTLREQIEAH-------WS---GKLQLGRFHERPVGP 54 (117)
T ss_dssp EEEEEEEEC----GGGHHHHHHHHHHHHHH-------TT---TCSEECCCBSSCCTT
T ss_pred ceEEEEecC----HHHHHHHHHHHHHHHHh-------cc---ccEeEecCccccCCC
Confidence 356788886 34678889888888764 11 147788899887554
No 39
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=23.96 E-value=80 Score=23.92 Aligned_cols=16 Identities=44% Similarity=0.526 Sum_probs=13.9
Q ss_pred CCcEEEec---cCCCCCCC
Q 047989 207 VPSVIVAG---DFNSVPGD 222 (223)
Q Consensus 207 ~~pvIl~G---DFN~~p~s 222 (223)
+.|||++| ||..+|+.
T Consensus 108 ~~~Vi~~Gl~~df~~~~F~ 126 (191)
T 1xx6_A 108 GRRVICAGLDMDFRGKPFG 126 (191)
T ss_dssp TCEEEEEECSBCTTSCBCT
T ss_pred CCEEEEEecccccccCcCc
Confidence 67999998 99999875
No 40
>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A
Probab=23.11 E-value=32 Score=23.11 Aligned_cols=12 Identities=33% Similarity=0.595 Sum_probs=9.8
Q ss_pred CcEEEeccCCCC
Q 047989 208 PSVIVAGDFNSV 219 (223)
Q Consensus 208 ~pvIl~GDFN~~ 219 (223)
..|-|+||||..
T Consensus 22 ~~V~v~GdFn~W 33 (96)
T 1z0n_A 22 KEVYLSGSFNNW 33 (96)
T ss_dssp SCEEEEEGGGTT
T ss_pred cEEEEEEEeCCC
Confidence 468999999974
No 41
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=22.38 E-value=90 Score=24.57 Aligned_cols=10 Identities=30% Similarity=0.441 Sum_probs=8.1
Q ss_pred CcEEEeccCC
Q 047989 208 PSVIVAGDFN 217 (223)
Q Consensus 208 ~pvIl~GDFN 217 (223)
.-||++||+=
T Consensus 53 d~vi~~GD~~ 62 (322)
T 2nxf_A 53 QCVVQLGDII 62 (322)
T ss_dssp SEEEECSCCB
T ss_pred CEEEECCCcc
Confidence 4599999983
No 42
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=21.12 E-value=75 Score=25.41 Aligned_cols=49 Identities=16% Similarity=0.107 Sum_probs=26.4
Q ss_pred cEEEEEeeeeecCCCC---CchhHHHHHHHHHHHHHHHHHhccCCCCCCcEEEeccCCC
Q 047989 163 HVVIVATTHLYWDPEL---ADVKLAQAKYLSSRLAEFRTQVSDRYDCVPSVIVAGDFNS 218 (223)
Q Consensus 163 ~~~~V~ntHL~~~~~~---~~~R~~Q~~~l~~~l~~~~~~~~~~~~~~~pvIl~GDFN~ 218 (223)
.++++.-+|+...... .......++.+++.+.+.. ....-||++||+=.
T Consensus 27 ri~~iSD~H~~~~~~~~~~~~~~~~~l~~~l~~i~~~~-------~~~d~vi~~GDl~~ 78 (330)
T 3ib7_A 27 VLLHISDTHLIGGDRRLYGAVDADDRLGELLEQLNQSG-------LRPDAIVFTGDLAD 78 (330)
T ss_dssp EEEEECCCCBCSSSCCBTTTBCHHHHHHHHHHHHHHHT-------CCCSEEEECSCCBT
T ss_pred EEEEEeCCccCCCCcccccccCHHHHHHHHHHHHHhcC-------CCCCEEEECCCCCC
Confidence 4567777888643211 1123445555555554421 12346999999843
Done!