BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047991
(146 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FHI|A Chain A, Substrate Analog (Ib2) Complex With The Fragile Histidine
Triad Protein, Fhit
pdb|4FIT|A Chain A, Fhit-Apo
pdb|6FIT|A Chain A, Fhit-Transition State Analog
Length = 147
Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 71/113 (62%), Gaps = 11/113 (9%)
Query: 6 YQFGPHKIDAKDVFYTTPLSFVMVNLRP-----------REVKRFADLTADEICDLWLTA 54
++FG H I VF T LSF +VN +P R V+RF DL DE+ DL+ T
Sbjct: 3 FRFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTT 62
Query: 55 RKVGRQLEVYHKASSLTLNIQDGPQAGQSVPHVHIHIVPRKESDFENNDEIYD 107
++VG +E + +SLT ++QDGP+AGQ+V HVH+H++PRK DF ND IY+
Sbjct: 63 QRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKAGDFHRNDSIYE 115
>pdb|3FIT|A Chain A, Fhit (Fragile Histidine Triad Protein) In Complex With
AdenosineSULFATE AMP ANALOG
pdb|1FIT|A Chain A, Fhit (Fragile Histidine Triad Protein)
pdb|2FIT|A Chain A, Fhit (Fragile Histidine Triad Protein)
pdb|5FIT|A Chain A, Fhit-Substrate Analog
Length = 147
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 70/113 (61%), Gaps = 11/113 (9%)
Query: 6 YQFGPHKIDAKDVFYTTPLSFVMVNLRP-----------REVKRFADLTADEICDLWLTA 54
++FG H I VF T LSF +VN +P R V+RF DL DE+ DL+ T
Sbjct: 3 FRFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTT 62
Query: 55 RKVGRQLEVYHKASSLTLNIQDGPQAGQSVPHVHIHIVPRKESDFENNDEIYD 107
++VG +E + +SLT + QDGP+AGQ+V HVH+H++PRK DF ND IY+
Sbjct: 63 QRVGTVVEKHFHGTSLTFSXQDGPEAGQTVKHVHVHVLPRKAGDFHRNDSIYE 115
>pdb|2FHI|A Chain A, Substrate Analog (Ib2) Complex With The His 96 Asn
Substitution Of The Fragile Histidine Triad Protein,
Fhit
Length = 147
Score = 102 bits (253), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 71/113 (62%), Gaps = 11/113 (9%)
Query: 6 YQFGPHKIDAKDVFYTTPLSFVMVNLRP-----------REVKRFADLTADEICDLWLTA 54
++FG H I VF T LSF +VN +P R V+RF DL DE+ DL+ T
Sbjct: 3 FRFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTT 62
Query: 55 RKVGRQLEVYHKASSLTLNIQDGPQAGQSVPHVHIHIVPRKESDFENNDEIYD 107
++VG +E + +SLT ++QDGP+AGQ+V HV++H++PRK DF ND IY+
Sbjct: 63 QRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVNVHVLPRKAGDFHRNDSIYE 115
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein
pdb|1EMS|B Chain B, Crystal Structure Of The C. Elegans Nitfhit Protein
Length = 440
Score = 100 bits (249), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 79/150 (52%), Gaps = 20/150 (13%)
Query: 7 QFGPHKIDAKDVFYTTPLSFVMVNLRP-----------REVKRFADLTADEICDLWLTAR 55
+F I A +FY+TP SFV VNL+P R V R DLT E DL++ A+
Sbjct: 300 KFARFNIPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAK 359
Query: 56 KVGRQLEVYHKASSLTLNIQDGPQAGQSVPHVHIHIVPRKESDFENNDEIYDAXXXXXXX 115
KV LE +H +S T+ +QDG AGQ+VPHVHIHI+PR+ DF +N EIY
Sbjct: 360 KVQAMLEKHHNVTSTTICVQDGKDAGQTVPHVHIHILPRRAGDFGDN-EIYQ-------- 410
Query: 116 XXXXXXXXXXXXXRSPEERIQEANEYRSLF 145
RS E+ +EA YR+L
Sbjct: 411 KLASHDKEPERKPRSNEQMAEEAVVYRNLM 440
>pdb|3L7X|A Chain A, The Crystal Structure Of Smu.412c From Streptococcus
Mutans Ua159
Length = 173
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 33 PRE-VKRFADLTADEICDLWLTARKVGRQLEVYHKASSLTLNIQDGPQAGQSVPHVHIHI 91
P+E V+ ++T + +L+ K+ R L+ KA L + + AGQ+V H H+H+
Sbjct: 77 PKEHVRNALEMTQTQAANLFARIPKIARALQKATKADGLNIINNNEETAGQTVFHAHVHL 136
Query: 92 VPRKESDFENNDE 104
VPR F ++DE
Sbjct: 137 VPR----FADSDE 145
>pdb|2EO4|A Chain A, Crystal Structure Of Hypothetical Histidine Triad
Nucleotide-Binding Protein St2152 From Sulfolobus
Tokodaii Strain7
Length = 149
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 23 PLSFVMVNLRPRE-VKRFADLTADEICDLWLTARKVGRQLEVYHKASSLTLNIQDGPQAG 81
P+S + P++ + + + D + +L + V ++ KA L L G AG
Sbjct: 30 PVSLGHTLVIPKKHFENYLEADEDTLAELAKVVKLVSLGIKDAVKADGLRLLTNIGRSAG 89
Query: 82 QSVPHVHIHIVPRKESDF 99
Q + H+H+HI+P E D+
Sbjct: 90 QVIFHLHVHIIPTWEGDY 107
>pdb|3O0M|A Chain A, Crystal Structure Of A Zn-Bound Histidine Triad Family
Protein From Mycobacterium Smegmatis
pdb|3O0M|B Chain B, Crystal Structure Of A Zn-Bound Histidine Triad Family
Protein From Mycobacterium Smegmatis
Length = 149
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 39 FADLTADEICDLWLTARKVGRQL-EVYHKASSLTLNIQDGPQAGQSVPHVHIHIVPRKES 97
D + + + +++ R E A + I DG A Q+V H+H+H+VPR+
Sbjct: 53 LTDTPPETVAGMAAVGQRIARAARESGLHADGNNIAINDGKAAFQTVFHIHLHVVPRRNG 112
Query: 98 D 98
D
Sbjct: 113 D 113
>pdb|3ANO|A Chain A, Crystal Structure Of A Novel Diadenosine
5',5'''-P1,P4-Tetraphosphate Phosphorylase From
Mycobacterium Tuberculosis H37rv
pdb|3ANO|B Chain B, Crystal Structure Of A Novel Diadenosine
5',5'''-P1,P4-Tetraphosphate Phosphorylase From
Mycobacterium Tuberculosis H37rv
Length = 218
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 12/87 (13%)
Query: 24 LSFVMVNLRP-----------REVKRFADLTADEICDLWLTARKVGRQLEVYHKASSLTL 72
L + ++NL P R V DLT E +L +K R ++ + +
Sbjct: 92 LVYAVLNLYPYNPGHLMVVPYRRVSELEDLTDLESAELMAFTQKAIRVIKNVSRPHGFNV 151
Query: 73 NIQDGPQAGQSVP-HVHIHIVPRKESD 98
+ G AG S+ H+H+H+VPR D
Sbjct: 152 GLNLGTSAGGSLAEHLHVHVVPRWGGD 178
>pdb|1XQU|A Chain A, Hit Family Hydrolase From Clostridium Thermocellum Cth-393
pdb|1XQU|B Chain B, Hit Family Hydrolase From Clostridium Thermocellum Cth-393
Length = 147
Score = 33.1 bits (74), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 13 IDAKDVFYTTPLSFVMVNLRPRE----VKRFADLTADEICDLWLTARKVGRQLEVYHKAS 68
I KD+ P+ +++ P+E VK + A + D+ A KV L + K
Sbjct: 59 IAIKDINPAAPVHVLII---PKEHIANVKEINESNAQILIDIHKAANKVAEDLGIAEKGY 115
Query: 69 SLTLNIQDGPQAGQSVPHVHIHIV 92
L N G AGQ+V H+H H++
Sbjct: 116 RLITNC--GVAAGQTVFHLHYHLL 137
>pdb|1Y23|A Chain A, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|B Chain B, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|C Chain C, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|D Chain D, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|E Chain E, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
Length = 145
Score = 33.1 bits (74), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Query: 71 TLNIQDGPQAGQSVPHVHIHIVPR 94
TLN +G +AGQSV H H+HI+PR
Sbjct: 86 TLN-NNGEKAGQSVFHYHMHIIPR 108
>pdb|3KSV|A Chain A, Hypothetical Protein From Leishmania Major
Length = 149
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 22 TPLSFVMVNLRPRE-VKRFADLTADEICDLWLTARKVGRQLEVYHKASSLTLNI--QDGP 78
PLS + + P+E +L ++ D+ + K R V S+ N+ +G
Sbjct: 41 NPLSRGHMLVIPKEHASCLHELGMEDAADVGVLLAKASRA--VAGPDGSMQYNVLQNNGS 98
Query: 79 QAGQSVPHVHIHIVPRKE 96
A Q VPHVH HI+P+ +
Sbjct: 99 LAHQEVPHVHFHIIPKTD 116
>pdb|3IMI|A Chain A, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|B Chain B, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|C Chain C, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|D Chain D, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
Length = 147
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 42 LTADEICDLWLTARKVGRQLEVYHKASSLTLNIQDGPQAGQSVPHVHIHIVPR 94
LT + ++ K+ ++ L +G +AGQ+V H H+H++PR
Sbjct: 60 LTPEIASHIFSVVPKIANAIKAEFNPVGFNLLNNNGEKAGQTVFHFHLHLIPR 112
>pdb|3P0T|A Chain A, Crystal Structure Of An Hit-Like Protein From
Mycobacterium Paratuberculosis
pdb|3P0T|B Chain B, Crystal Structure Of An Hit-Like Protein From
Mycobacterium Paratuberculosis
Length = 138
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 80 AGQSVPHVHIHIVP-RKESDF 99
AG VPH+H+H+ P R SDF
Sbjct: 89 AGLEVPHLHVHVFPTRSLSDF 109
>pdb|3O1Z|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) Double Cysteine
Mutant From Rabbit
Length = 126
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
Query: 17 DVFYTTPLSFVMVNLRPREVKRFADLTADEICD------LWLTARKVGRQLEVYHKASSL 70
D+ P F+++ P+ K + ++A E D L + +K L + K +
Sbjct: 43 DISPQAPTHFLVI---PK--KHISQISAAEDADESLLGHLMIVGKKAAADLGLK-KGYRM 96
Query: 71 TLNIQDGPQAGQSVPHVHIHIVPRKESDF 99
+N +G GQSV HVH+H++ ++ ++
Sbjct: 97 VVN--EGSDGGQSVYHVHLHVLGGRQMNW 123
>pdb|3O1C|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) C38a Mutant From
Rabbit Complexed With Adenosine
Length = 126
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
Query: 17 DVFYTTPLSFVMVNLRPREVKRFADLTADEICD------LWLTARKVGRQLEVYHKASSL 70
D+ P F+++ P+ K + ++A E D L + +K L + K +
Sbjct: 43 DISPQAPTHFLVI---PK--KHISQISAAEDADESLLGHLMIVGKKCAADLGLK-KGYRM 96
Query: 71 TLNIQDGPQAGQSVPHVHIHIVPRKESDF 99
+N +G GQSV HVH+H++ ++ ++
Sbjct: 97 VVN--EGSDGGQSVYHVHLHVLGGRQMNW 123
>pdb|3O1X|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) C84a Mutant From
Rabbit Complexed With Adenosine
Length = 126
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
Query: 17 DVFYTTPLSFVMVNLRPREVKRFADLTADEICD------LWLTARKVGRQLEVYHKASSL 70
D+ P F+++ P+ K + ++A E D L + +K L + K +
Sbjct: 43 DISPQAPTHFLVI---PK--KHISQISAAEDADESLLGHLMIVGKKAAADLGLK-KGYRM 96
Query: 71 TLNIQDGPQAGQSVPHVHIHIVPRKESDF 99
+N +G GQSV HVH+H++ ++ ++
Sbjct: 97 VVN--EGSDGGQSVYHVHLHVLGGRQMNW 123
>pdb|3UES|A Chain A, Crystal Structure Of Alpha-1,34-Fucosidase From
Bifidobacterium Longum Subsp. Infantis Complexed With
Deoxyfuconojirimycin
pdb|3UES|B Chain B, Crystal Structure Of Alpha-1,34-Fucosidase From
Bifidobacterium Longum Subsp. Infantis Complexed With
Deoxyfuconojirimycin
Length = 478
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 10/59 (16%)
Query: 42 LTADEICDLWLTARKVGRQLEVYHKASSLTLNIQDGPQAGQSVPHVH-IHIVPRKESDF 99
++AD++ DLWL+A VG SSL LNI P+ + P V + + R+ S+F
Sbjct: 301 MSADQLFDLWLSA--VGGN-------SSLLLNIPPSPEGLLAEPDVQSLKGLGRRVSEF 350
>pdb|1RZY|A Chain A, Crystal Structure Of Rabbit Hint Complexed With N-
Ethylsulfamoyladenosine
pdb|3QGZ|A Chain A, Re-Investigated High Resolution Crystal Structure Of
Histidine Triad Nucleotide-Binding Protein 1 (Hint1)
From Rabbit Complexed With Adenosine
Length = 126
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
Query: 17 DVFYTTPLSFVMVNLRPREVKRFADLTADEICD------LWLTARKVGRQLEVYHKASSL 70
D+ P F+++ P+ K + ++A E D L + +K L + K +
Sbjct: 43 DISPQAPTHFLVI---PK--KHISQISAAEDADESLLGHLMIVGKKCAADLGLK-KGYRM 96
Query: 71 TLNIQDGPQAGQSVPHVHIHIVPRKESDF 99
+N +G GQSV HVH+H++ ++ ++
Sbjct: 97 VVN--EGSDGGQSVYHVHLHVLGGRQMNW 123
>pdb|3UET|A Chain A, Crystal Structure Of Alpha-1,34-Fucosidase From
Bifidobacterium Longum Subsp. Infantis D172aE217A MUTANT
COMPLEXED WITH LACTO-N- Fucopentaose Ii
pdb|3UET|B Chain B, Crystal Structure Of Alpha-1,34-Fucosidase From
Bifidobacterium Longum Subsp. Infantis D172aE217A MUTANT
COMPLEXED WITH LACTO-N- Fucopentaose Ii
Length = 478
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 10/59 (16%)
Query: 42 LTADEICDLWLTARKVGRQLEVYHKASSLTLNIQDGPQAGQSVPHVH-IHIVPRKESDF 99
++AD++ DLWL+A VG SSL LNI P+ + P V + + R+ S+F
Sbjct: 301 MSADQLFDLWLSA--VGGN-------SSLLLNIPPSPEGLLAEPDVQSLKGLGRRVSEF 350
>pdb|3RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Complexed With Gmp
pdb|4RHN|A Chain A, Histidine Triad Nucleotide-binding Protein (hint) From
Rabbit Complexed With Adenosine
pdb|5RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Complexed With 8-Br-Amp
pdb|6RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Without Nucleotide
Length = 115
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
Query: 17 DVFYTTPLSFVMVNLRPREVKRFADLTADEICD------LWLTARKVGRQLEVYHKASSL 70
D+ P F+++ P+ K + ++A E D L + +K L + K +
Sbjct: 32 DISPQAPTHFLVI---PK--KHISQISAAEDADESLLGHLMIVGKKCAADLGLK-KGYRM 85
Query: 71 TLNIQDGPQAGQSVPHVHIHIVPRKESDF 99
+N +G GQSV HVH+H++ ++ ++
Sbjct: 86 VVN--EGSDGGQSVYHVHLHVLGGRQMNW 112
>pdb|3LB5|A Chain A, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|B Chain B, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|C Chain C, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|D Chain D, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
Length = 161
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 55 RKVGRQLEVYHKASSLTLNIQDGPQAGQSVPHVHIHIVPRKES 97
+K+ + ++ +A +T+ + + Q+V H+H HI+PR E
Sbjct: 92 QKIAKAVKKAFQADGITVMQFNEAASQQTVYHLHFHIIPRMEG 134
>pdb|4EQE|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Lys-Ams
pdb|4EQE|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Lys-Ams
pdb|4EQG|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Ala-Ams
pdb|4EQG|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Ala-Ams
pdb|4EQH|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Trp-Ams
pdb|4EQH|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Trp-Ams
Length = 128
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
Query: 67 ASSLTLN------IQDGPQAGQSVPHVHIHIVPRKE 96
A+ L LN + +G GQSV HVH+H++ ++
Sbjct: 87 AADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQ 122
>pdb|3TW2|A Chain A, High Resolution Structure Of Human Histidine Triad
Nucleotide-binding Protein 1 (hhint1)/amp Complex In A
Monoclinic Space Group
pdb|3TW2|B Chain B, High Resolution Structure Of Human Histidine Triad
Nucleotide-binding Protein 1 (hhint1)/amp Complex In A
Monoclinic Space Group
Length = 126
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
Query: 67 ASSLTLN------IQDGPQAGQSVPHVHIHIVPRKE 96
A+ L LN + +G GQSV HVH+H++ ++
Sbjct: 85 AADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQ 120
>pdb|1KPA|A Chain A, Pkci-1-Zinc
pdb|1KPA|B Chain B, Pkci-1-Zinc
pdb|1KPC|A Chain A, Pkci-1-Apo+zinc
pdb|1KPC|B Chain B, Pkci-1-Apo+zinc
pdb|1KPC|C Chain C, Pkci-1-Apo+zinc
pdb|1KPC|D Chain D, Pkci-1-Apo+zinc
pdb|1KPE|A Chain A, Pkci-Transition State Analog
pdb|1KPF|A Chain A, Pkci-Substrate Analog
pdb|1AV5|A Chain A, Pkci-Substrate Analog
pdb|1AV5|B Chain B, Pkci-Substrate Analog
pdb|1KPE|B Chain B, Pkci-Transition State Analog
Length = 126
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
Query: 67 ASSLTLN------IQDGPQAGQSVPHVHIHIVPRKE 96
A+ L LN + +G GQSV HVH+H++ ++
Sbjct: 85 AADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQ 120
>pdb|1KPB|A Chain A, Pkci-1-Apo
pdb|1KPB|B Chain B, Pkci-1-Apo
Length = 125
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
Query: 67 ASSLTLN------IQDGPQAGQSVPHVHIHIVPRKE 96
A+ L LN + +G GQSV HVH+H++ ++
Sbjct: 84 AADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQ 119
>pdb|3MO4|A Chain A, The Crystal Structure Of An Alpha-(1-3,4)-Fucosidase From
Bifidobacterium Longum Subsp. Infantis Atcc 15697
pdb|3MO4|B Chain B, The Crystal Structure Of An Alpha-(1-3,4)-Fucosidase From
Bifidobacterium Longum Subsp. Infantis Atcc 15697
Length = 480
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
Query: 43 TADEICDLWLTARKVGRQLEVYHKASSLTLNIQDGPQAGQSVPHVH-IHIVPRKESDF 99
+AD++ DLWL+A VG SSL LNI P+ + P V + + R+ S+F
Sbjct: 304 SADQLFDLWLSA--VGGN-------SSLLLNIPPSPEGLLAEPDVQSLKGLGRRVSEF 352
>pdb|3I4S|A Chain A, Crystal Structure Of Histidine Triad Protein Blr8122 From
Bradyrhizobium Japonicum
pdb|3I4S|B Chain B, Crystal Structure Of Histidine Triad Protein Blr8122 From
Bradyrhizobium Japonicum
Length = 149
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 26 FVMVNLRPREVKRFADLTADEICDLWLTARKVGRQLEVYHKASSLTLNIQDGPQAGQSVP 85
++V RP V+ DL + L +V R L+ K L + G VP
Sbjct: 40 LLLVPRRPDAVE-IIDLDEVQQAQLMTEISRVSRALKEITKCDKLNIA-----ALGNLVP 93
Query: 86 HVHIHIVPRKESD 98
+H+HI+ R+ D
Sbjct: 94 QLHVHIIARRTGD 106
>pdb|2OIK|A Chain A, Crystal Structure Of A Histidine Triad (Hit) Protein
(Mfla_2506) From Methylobacillus Flagellatus Kt At 1.65
A Resolution
pdb|2OIK|B Chain B, Crystal Structure Of A Histidine Triad (Hit) Protein
(Mfla_2506) From Methylobacillus Flagellatus Kt At 1.65
A Resolution
pdb|2OIK|C Chain C, Crystal Structure Of A Histidine Triad (Hit) Protein
(Mfla_2506) From Methylobacillus Flagellatus Kt At 1.65
A Resolution
pdb|2OIK|D Chain D, Crystal Structure Of A Histidine Triad (Hit) Protein
(Mfla_2506) From Methylobacillus Flagellatus Kt At 1.65
A Resolution
Length = 154
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 81 GQSVPHVHIHIVPRKESD 98
G PHVH H++PR + D
Sbjct: 91 GNXTPHVHWHVIPRFKRD 108
>pdb|3OJ7|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Sulfate
pdb|3OMF|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Amp
pdb|3OXK|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Gmp
Length = 117
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 77 GPQAGQSVPHVHIHIVPRKE 96
G AGQ+V H+H HI+ K+
Sbjct: 92 GEDAGQTVKHIHFHILGGKK 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,918,970
Number of Sequences: 62578
Number of extensions: 130391
Number of successful extensions: 239
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 212
Number of HSP's gapped (non-prelim): 29
length of query: 146
length of database: 14,973,337
effective HSP length: 90
effective length of query: 56
effective length of database: 9,341,317
effective search space: 523113752
effective search space used: 523113752
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)