Query 047991
Match_columns 146
No_of_seqs 145 out of 1263
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 05:12:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047991.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047991hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3379 Diadenosine polyphosph 100.0 1.7E-34 3.6E-39 206.3 13.0 136 3-145 4-150 (150)
2 COG0537 Hit Diadenosine tetrap 100.0 4.7E-28 1E-32 176.4 13.5 102 5-107 2-117 (138)
3 cd01275 FHIT FHIT (fragile his 99.9 3E-24 6.4E-29 153.5 11.9 98 6-103 1-112 (126)
4 PRK10687 purine nucleoside pho 99.9 5.2E-24 1.1E-28 151.6 10.3 91 5-96 4-109 (119)
5 PF01230 HIT: HIT domain; Int 99.9 5.2E-24 1.1E-28 145.9 8.1 84 12-96 3-97 (98)
6 cd01277 HINT_subgroup HINT (hi 99.9 5.3E-23 1.1E-27 141.4 10.7 88 6-94 2-103 (103)
7 cd01276 PKCI_related Protein K 99.9 2.3E-21 5E-26 133.7 9.1 88 5-94 1-104 (104)
8 cd00468 HIT_like HIT family: H 99.8 1E-20 2.2E-25 125.7 8.8 75 19-93 1-86 (86)
9 KOG3275 Zinc-binding protein o 99.8 5.7E-20 1.2E-24 128.5 10.2 89 4-96 16-121 (127)
10 cd01278 aprataxin_related apra 99.8 3E-18 6.4E-23 118.4 10.0 86 5-92 1-103 (104)
11 cd00608 GalT Galactose-1-phosp 99.8 2.8E-18 6E-23 140.7 10.5 105 4-108 184-308 (329)
12 TIGR00209 galT_1 galactose-1-p 99.8 3.8E-18 8.2E-23 140.8 10.5 105 4-108 194-318 (347)
13 PRK11720 galactose-1-phosphate 99.8 5.1E-18 1.1E-22 140.0 10.1 105 4-108 194-318 (346)
14 PLN02643 ADP-glucose phosphory 99.7 3E-16 6.5E-21 129.1 9.6 93 4-97 198-305 (336)
15 PF11969 DcpS_C: Scavenger mRN 99.1 1.7E-10 3.7E-15 81.6 6.0 86 6-95 2-105 (116)
16 PF02744 GalP_UDP_tr_C: Galact 99.1 7.3E-10 1.6E-14 83.1 9.1 106 4-109 13-137 (166)
17 COG1085 GalT Galactose-1-phosp 99.0 5.2E-09 1.1E-13 86.0 9.9 94 15-109 200-309 (338)
18 KOG2958 Galactose-1-phosphate 98.7 5.1E-08 1.1E-12 78.4 8.0 97 14-110 213-327 (354)
19 KOG4359 Protein kinase C inhib 98.5 8.9E-07 1.9E-11 64.3 8.3 90 3-95 30-137 (166)
20 PF04677 CwfJ_C_1: Protein sim 97.5 0.0026 5.5E-08 45.4 10.7 88 2-95 9-109 (121)
21 cd00608 GalT Galactose-1-phosp 97.1 0.0017 3.7E-08 53.4 7.2 61 34-94 102-162 (329)
22 COG1085 GalT Galactose-1-phosp 97.1 0.0018 3.8E-08 53.6 6.4 60 34-93 103-162 (338)
23 PRK11720 galactose-1-phosphate 96.4 0.017 3.6E-07 48.1 7.5 58 34-93 114-171 (346)
24 KOG3969 Uncharacterized conser 96.2 0.023 5E-07 45.9 7.2 59 34-96 198-259 (310)
25 PF01087 GalP_UDP_transf: Gala 96.0 0.023 4.9E-07 43.0 6.0 60 34-93 119-178 (183)
26 TIGR00209 galT_1 galactose-1-p 95.8 0.05 1.1E-06 45.3 7.9 58 34-93 114-171 (347)
27 PLN02643 ADP-glucose phosphory 94.5 0.11 2.4E-06 43.0 6.1 60 34-93 116-175 (336)
28 COG5075 Uncharacterized conser 92.3 0.17 3.7E-06 40.4 3.5 74 16-93 155-250 (305)
29 KOG0562 Predicted hydrolase (H 89.4 0.51 1.1E-05 35.6 3.6 73 16-95 15-106 (184)
30 PF01076 Mob_Pre: Plasmid reco 87.9 4.4 9.5E-05 30.8 8.0 51 41-98 94-145 (196)
31 PLN03103 GDP-L-galactose-hexos 84.3 1.6 3.5E-05 37.2 4.2 27 66-93 215-241 (403)
32 PRK05471 CDP-diacylglycerol py 80.3 9.5 0.00021 30.6 7.0 74 16-91 55-143 (252)
33 KOG2476 Uncharacterized conser 80.2 19 0.00041 31.5 9.2 88 3-96 318-418 (528)
34 KOG2958 Galactose-1-phosphate 79.1 7.6 0.00016 32.0 6.2 58 34-91 117-174 (354)
35 KOG2477 Uncharacterized conser 78.1 21 0.00046 31.6 8.9 80 12-95 417-508 (628)
36 COG2411 Uncharacterized conser 78.1 11 0.00025 28.6 6.5 85 4-98 26-113 (188)
37 TIGR00672 cdh CDP-diacylglycer 78.0 11 0.00024 30.1 6.8 74 16-91 54-142 (250)
38 COG2134 Cdh CDP-diacylglycerol 74.1 27 0.00059 27.5 7.8 45 46-92 100-144 (252)
39 COG4360 APA2 ATP adenylyltrans 72.2 8.9 0.00019 30.8 4.8 24 72-95 141-164 (298)
40 PF03432 Relaxase: Relaxase/Mo 70.8 7.3 0.00016 29.8 4.1 36 84-119 100-140 (242)
41 PF02611 CDH: CDP-diacylglycer 67.6 5.8 0.00013 31.2 2.9 75 16-92 26-115 (222)
42 PF02729 OTCace_N: Aspartate/o 42.8 34 0.00074 24.7 3.3 31 34-64 1-31 (142)
43 COG4840 Uncharacterized protei 40.6 78 0.0017 20.3 4.2 33 105-144 37-69 (71)
44 PF01446 Rep_1: Replication pr 39.7 75 0.0016 25.0 5.0 11 84-94 79-89 (233)
45 PRK13878 conjugal transfer rel 38.7 84 0.0018 29.2 5.7 37 82-118 110-150 (746)
46 cd00472 Ribosomal_L24e_L24 Rib 36.6 44 0.00094 20.4 2.6 30 1-30 1-33 (54)
47 PF07544 Med9: RNA polymerase 34.5 80 0.0017 20.6 3.8 35 109-144 33-67 (83)
48 PRK14891 50S ribosomal protein 30.6 55 0.0012 23.7 2.6 30 1-30 2-34 (131)
49 COG4464 CapC Capsular polysacc 28.6 86 0.0019 24.9 3.6 56 87-145 4-66 (254)
50 PF01246 Ribosomal_L24e: Ribos 28.0 35 0.00075 22.0 1.2 29 1-29 1-32 (71)
51 COG1087 GalE UDP-glucose 4-epi 24.2 3E+02 0.0065 23.0 6.2 15 86-100 274-288 (329)
52 PF14394 DUF4423: Domain of un 23.6 1.5E+02 0.0032 22.1 4.0 50 34-93 120-170 (171)
53 PF03039 IL12: Interleukin-12 22.7 1.5E+02 0.0032 23.3 3.9 44 102-145 124-170 (219)
54 PF13960 DUF4218: Domain of un 22.5 45 0.00098 24.0 1.0 67 42-120 18-85 (128)
55 KOG2720 Predicted hydrolase (H 21.5 41 0.00088 28.5 0.7 26 66-92 212-237 (431)
56 PF05373 Pro_3_hydrox_C: L-pro 21.4 1E+02 0.0023 21.2 2.6 31 102-145 63-93 (101)
57 smart00309 PAH Pancreatic horm 21.0 1.7E+02 0.0037 16.3 3.1 21 125-145 8-28 (36)
58 PF08902 DUF1848: Domain of un 20.9 1.2E+02 0.0027 24.4 3.3 40 22-61 148-194 (266)
59 COG1348 NifH Nitrogenase subun 20.6 2E+02 0.0043 23.3 4.3 105 37-142 144-271 (278)
60 PF08312 cwf21: cwf21 domain; 20.5 77 0.0017 18.6 1.6 18 129-146 25-42 (46)
61 PF15150 PMAIP1: Phorbol-12-my 20.4 58 0.0013 19.6 1.0 16 127-142 14-30 (54)
No 1
>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.7e-34 Score=206.32 Aligned_cols=136 Identities=53% Similarity=0.773 Sum_probs=127.6
Q ss_pred CccceecccccCCccEEEECCcEEEEEeCCC-----------cccCCCCCCCHHHHHHHHHHHHHHHHHhhhhcCCCceE
Q 047991 3 IEYYQFGPHKIDAKDVFYTTPLSFVMVNLRP-----------REVKRFADLTADEICDLWLTARKVGRQLEVYHKASSLT 71 (146)
Q Consensus 3 ~~~~~f~~~~ip~~~vv~e~d~~~af~di~P-----------~H~~~~~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~~n 71 (146)
+..+.||++.||+..|+|++++.+||.++.| |-++.|.||+.+|.++|+..+++|.+.|++.++...+|
T Consensus 4 ~~~~~F~~~~i~~~~VFykT~~sfafvNlkPvvpgHVLv~P~R~vpRl~dLt~~E~aDlF~t~~~v~~~lek~~~~ts~t 83 (150)
T KOG3379|consen 4 TKSLYFGKFLIPPDHVFYKTKHSFAFVNLKPVVPGHVLVSPLRVVPRLTDLTAAETADLFTTVQKVQRVLEKHYNATSLT 83 (150)
T ss_pred CcccccccccCCcceEEEeccceEEEEeccccccceEEEeccccccccccCCcHHHHHHHHHHHHHHHHHHHHhcccceE
Confidence 4678999999999999999999999999887 66799999999999999999999999999999999999
Q ss_pred EEEecCCCCCCccCeEEEEEeccCCCCCCCChhhhhhhHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHhhc
Q 047991 72 LNIQDGPQAGQSVPHVHIHIVPRKESDFENNDEIYDALDVKEKELKKKLDLDEERKDRSPEERIQEANEYRSLF 145 (146)
Q Consensus 72 i~~n~g~~~gq~v~H~HiHIIPR~~~d~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (146)
+.+.+|+.+||+|||+|+||+||+.+|...|+.+|+.|+... ++..+|++|+.|||++||.+||.+|
T Consensus 84 i~iQDG~~AGQTVpHvHvHIlPR~~gDf~~Nd~IY~~L~~~~-------~e~~~r~~Rs~eEM~eEA~~lr~~~ 150 (150)
T KOG3379|consen 84 IAIQDGPEAGQTVPHVHVHILPRKAGDFGDNDLIYDELDKHE-------KELEDRKPRSLEEMAEEAQRLREYF 150 (150)
T ss_pred EEeccccccCcccceeEEEEccccccccccchHHHHHHHhcc-------cccccCCcchHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999998664 3447899999999999999999875
No 2
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=99.96 E-value=4.7e-28 Score=176.45 Aligned_cols=102 Identities=28% Similarity=0.492 Sum_probs=93.7
Q ss_pred cceeccc---ccCCccEEEECCcEEEEEeCCC-----------cccCCCCCCCHHHHHHHHHHHHHHHHHhhhhcCCCce
Q 047991 5 YYQFGPH---KIDAKDVFYTTPLSFVMVNLRP-----------REVKRFADLTADEICDLWLTARKVGRQLEVYHKASSL 70 (146)
Q Consensus 5 ~~~f~~~---~ip~~~vv~e~d~~~af~di~P-----------~H~~~~~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~~ 70 (146)
.|.||.. ++| +.+||||++++||+|++| +|+.++.+++++++.+|+.++++++++++..++++||
T Consensus 2 ~ciFc~ii~~e~~-~~~Vye~~~~~afld~~P~~~gH~LviPk~h~~~l~~l~~~~~~~l~~~~~~ia~al~~~~~~~g~ 80 (138)
T COG0537 2 MCIFCKIIRGEIP-ANKVYEDEHVLAFLDIYPAAPGHTLVIPKRHVSDLEDLDPEELAELFLLAQKIAKALKEAFGADGY 80 (138)
T ss_pred CceeeeeecCCCC-ceEEEeCCCEEEEecCCCCCCCeEEEEeccchhhhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCce
Confidence 5788875 566 899999999999999998 8999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCccCeEEEEEeccCCCCCCCChhhhh
Q 047991 71 TLNIQDGPQAGQSVPHVHIHIVPRKESDFENNDEIYD 107 (146)
Q Consensus 71 ni~~n~g~~~gq~v~H~HiHIIPR~~~d~~~~~~~~~ 107 (146)
|+++|+|..+||+|+|+|+|||||+.+|..+....|.
T Consensus 81 ni~~N~g~~agq~V~HlH~HvIPr~~~d~~~~~~~~~ 117 (138)
T COG0537 81 NIGINNGKAAGQEVFHLHIHIIPRYKGDDNFPGPGWG 117 (138)
T ss_pred EEEEecCcccCcCcceEEEEEcCCcCCCCCccccccc
Confidence 9999999999999999999999999988766555554
No 3
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=99.92 E-value=3e-24 Score=153.49 Aligned_cols=98 Identities=42% Similarity=0.605 Sum_probs=89.6
Q ss_pred ceecccccCC---ccEEEECCcEEEEEeCCC-----------cccCCCCCCCHHHHHHHHHHHHHHHHHhhhhcCCCceE
Q 047991 6 YQFGPHKIDA---KDVFYTTPLSFVMVNLRP-----------REVKRFADLTADEICDLWLTARKVGRQLEVYHKASSLT 71 (146)
Q Consensus 6 ~~f~~~~ip~---~~vv~e~d~~~af~di~P-----------~H~~~~~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~~n 71 (146)
|.||+..... +++|+|+++++||++..| +|++++.+|+++++.+++.+++++.+++++.+++++||
T Consensus 1 C~fC~i~~~e~~~~~iv~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~~~~~v~~~l~~~~~~~~~n 80 (126)
T cd01275 1 CVFCDIPIKPDEDNLVFYRTKHSFAVVNLYPYNPGHVLVVPYRHVPRLEDLTPEEIADLFKLVQLAMKALKVVYKPDGFN 80 (126)
T ss_pred CccccCccCCCccccEEEeCCCEEEEEcCCCCCCCcEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 6788875432 479999999999999887 89999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCccCeEEEEEeccCCCCCCCCh
Q 047991 72 LNIQDGPQAGQSVPHVHIHIVPRKESDFENND 103 (146)
Q Consensus 72 i~~n~g~~~gq~v~H~HiHIIPR~~~d~~~~~ 103 (146)
+++|+|+.+||+++|+|+|||||+.+|...++
T Consensus 81 ~~~~~g~~~gq~v~H~HiHiiPR~~~d~~~~~ 112 (126)
T cd01275 81 IGINDGKAGGGIVPHVHIHIVPRWNGDTNFMP 112 (126)
T ss_pred EEEeCCcccCCCcCEEEEEEeCCcCCCCCCCC
Confidence 99999999999999999999999999876554
No 4
>PRK10687 purine nucleoside phosphoramidase; Provisional
Probab=99.91 E-value=5.2e-24 Score=151.62 Aligned_cols=91 Identities=19% Similarity=0.256 Sum_probs=82.2
Q ss_pred cceeccc---ccCCccEEEECCcEEEEEeCCC-----------cccCCCCCCCHHHHHHHHHHHHHHHHHhh-hhcCCCc
Q 047991 5 YYQFGPH---KIDAKDVFYTTPLSFVMVNLRP-----------REVKRFADLTADEICDLWLTARKVGRQLE-VYHKASS 69 (146)
Q Consensus 5 ~~~f~~~---~ip~~~vv~e~d~~~af~di~P-----------~H~~~~~dL~~ee~~~l~~~~~~v~~~l~-~~~~~~~ 69 (146)
.|.||.. ++| +.+|||||.++||+|++| +|++++.||+++++.+++.+++.+.+.++ ..++++|
T Consensus 4 ~CiFC~I~~g~~p-~~~v~edd~~~aflD~~P~~~GH~LViPK~H~~~l~dl~~~~~~~l~~l~~~~~~~~~~~~~~~~g 82 (119)
T PRK10687 4 ETIFSKIIRREIP-SDIVYQDELVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDG 82 (119)
T ss_pred CCchhhhhcCCCC-CCEEEECCCEEEEEcCCCCCCccEEEEehhHhCChhHCChHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 5899996 676 799999999999999998 89999999999999999988887777654 4468999
Q ss_pred eEEEEecCCCCCCccCeEEEEEeccCC
Q 047991 70 LTLNIQDGPQAGQSVPHVHIHIVPRKE 96 (146)
Q Consensus 70 ~ni~~n~g~~~gq~v~H~HiHIIPR~~ 96 (146)
||+++|+|+.+||+|+|+|+|||||+.
T Consensus 83 ~~l~~n~G~~agQ~V~HlHiHvI~g~~ 109 (119)
T PRK10687 83 YRLIMNTNRHGGQEVYHIHMHLLGGRP 109 (119)
T ss_pred eEEEEeCCCcCCcccCEEEEEECCCcc
Confidence 999999999999999999999999986
No 5
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=99.90 E-value=5.2e-24 Score=145.94 Aligned_cols=84 Identities=32% Similarity=0.586 Sum_probs=78.8
Q ss_pred ccCCccEEEECCcEEEEEeCCC-----------cccCCCCCCCHHHHHHHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q 047991 12 KIDAKDVFYTTPLSFVMVNLRP-----------REVKRFADLTADEICDLWLTARKVGRQLEVYHKASSLTLNIQDGPQA 80 (146)
Q Consensus 12 ~ip~~~vv~e~d~~~af~di~P-----------~H~~~~~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~ 80 (146)
++| +++||||++++||++++| +|++++.+|+++++.+|+.++++++++++..+++++||+.+|+|+.+
T Consensus 3 e~~-~~vv~e~~~~~~~~~~~p~~~gh~LVipk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~g~~~ 81 (98)
T PF01230_consen 3 EIP-ARVVYEDDHFVAFLDIFPISPGHLLVIPKRHVESLSDLPPEERAELMQLVQKVAKALKEAFGPDGYNVIINNGPAA 81 (98)
T ss_dssp SSH-CEEEEE-SSEEEEEESSTSSTTEEEEEESSTGSSGGGSHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESGGG
T ss_pred CCC-eeEEEECCCEEEEEcCCCCCCeEEEEEecccccchhcCCHHHHHHHHHHHHHHHHHHhcccccceeeccccchhhh
Confidence 555 799999999999999988 89999999999999999999999999999999999999999999999
Q ss_pred CCccCeEEEEEeccCC
Q 047991 81 GQSVPHVHIHIVPRKE 96 (146)
Q Consensus 81 gq~v~H~HiHIIPR~~ 96 (146)
||+|+|+|+|||||++
T Consensus 82 gq~v~HlH~HviPR~~ 97 (98)
T PF01230_consen 82 GQSVPHLHFHVIPRYK 97 (98)
T ss_dssp TSSSSS-EEEEEEEST
T ss_pred cCccCEEEEEEecccC
Confidence 9999999999999985
No 6
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=99.90 E-value=5.3e-23 Score=141.37 Aligned_cols=88 Identities=32% Similarity=0.537 Sum_probs=82.4
Q ss_pred ceeccc---ccCCccEEEECCcEEEEEeCCC-----------cccCCCCCCCHHHHHHHHHHHHHHHHHhhhhcCCCceE
Q 047991 6 YQFGPH---KIDAKDVFYTTPLSFVMVNLRP-----------REVKRFADLTADEICDLWLTARKVGRQLEVYHKASSLT 71 (146)
Q Consensus 6 ~~f~~~---~ip~~~vv~e~d~~~af~di~P-----------~H~~~~~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~~n 71 (146)
|.||+. +.+ .++|+|+++|+||++..| +|++++.+|+++++.+|+.+++++.+++++.+++++||
T Consensus 2 C~~c~ii~~e~~-~~iv~e~~~~~a~~~~~~~~pg~~lI~Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~n 80 (103)
T cd01277 2 CIFCKIIAGEIP-SYKVYEDDHVLAFLDINPASKGHTLVIPKKHYENLLDLDPEELAELILAAKKVARALKKALKADGLN 80 (103)
T ss_pred CccccccCCCCC-CCEEEeCCCEEEEECCCCCCCeeEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 778886 343 579999999999999877 99999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCccCeEEEEEecc
Q 047991 72 LNIQDGPQAGQSVPHVHIHIVPR 94 (146)
Q Consensus 72 i~~n~g~~~gq~v~H~HiHIIPR 94 (146)
+++|+|+..||+++|+|+||+||
T Consensus 81 ~~~~~~~~~g~~~~H~HiHiiPR 103 (103)
T cd01277 81 ILQNNGRAAGQVVFHVHVHVIPR 103 (103)
T ss_pred EEEeCCcccCcccCEEEEEEccC
Confidence 99999999999999999999998
No 7
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=99.86 E-value=2.3e-21 Score=133.75 Aligned_cols=88 Identities=18% Similarity=0.243 Sum_probs=76.2
Q ss_pred cceeccc---ccCCccEEEECCcEEEEEeCCC-----------cccCCCCCCCHHHHHHHHHHHHHHHHHhhhhcC--CC
Q 047991 5 YYQFGPH---KIDAKDVFYTTPLSFVMVNLRP-----------REVKRFADLTADEICDLWLTARKVGRQLEVYHK--AS 68 (146)
Q Consensus 5 ~~~f~~~---~ip~~~vv~e~d~~~af~di~P-----------~H~~~~~dL~~ee~~~l~~~~~~v~~~l~~~~~--~~ 68 (146)
.|.||+. +++ +++||||++++||+|.+| +|++++.+|+++++.++..+++.+ +++.+.++ ++
T Consensus 1 ~C~fc~i~~~e~~-~~iv~e~~~~~a~~~~~p~~~gh~lIiPk~H~~~~~dl~~~~~~~l~~~~~~~-~~~~~~~~~~~~ 78 (104)
T cd01276 1 DCIFCKIIRGEIP-AKKVYEDDEVLAFHDINPQAPVHILVIPKKHIASLSDATEEDEELLGHLLSAA-AKVAKDLGIAED 78 (104)
T ss_pred CCcceecccCCCc-cCEEEECCCEEEEECCCCCCCCEEEEEecceeCChHHcccccHHHHHHHHHHH-HHHHHHhCCCCC
Confidence 3788886 455 799999999999999888 899999999998888888888877 44444555 78
Q ss_pred ceEEEEecCCCCCCccCeEEEEEecc
Q 047991 69 SLTLNIQDGPQAGQSVPHVHIHIVPR 94 (146)
Q Consensus 69 ~~ni~~n~g~~~gq~v~H~HiHIIPR 94 (146)
+||+++|+|+.+||+++|+|+|||+|
T Consensus 79 ~~n~~~~~g~~~g~~v~H~HiHii~~ 104 (104)
T cd01276 79 GYRLVINCGKDGGQEVFHLHLHLLGG 104 (104)
T ss_pred CEEEEEeCCCCCCCceeEEEEEEeCC
Confidence 99999999999999999999999986
No 8
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=99.84 E-value=1e-20 Score=125.73 Aligned_cols=75 Identities=44% Similarity=0.705 Sum_probs=72.7
Q ss_pred EEECCcEEEEEeCCC-----------cccCCCCCCCHHHHHHHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccCeE
Q 047991 19 FYTTPLSFVMVNLRP-----------REVKRFADLTADEICDLWLTARKVGRQLEVYHKASSLTLNIQDGPQAGQSVPHV 87 (146)
Q Consensus 19 v~e~d~~~af~di~P-----------~H~~~~~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~gq~v~H~ 87 (146)
||||++++||+|++| +|+.++.+|+++++.+++.+++++.+++++.++++++|+++|+|+.+||+++|+
T Consensus 1 ~~e~~~~~a~~~~~p~~~gh~lIipk~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~n~g~~~g~~v~H~ 80 (86)
T cd00468 1 VPDDEHSFAFVNLKPAAPGHVLVCPKRHVETLPDLDEALLADLVITAQRVAAELEKHGNVPSLTVFVNDGAAAGQSVPHV 80 (86)
T ss_pred CeecCcEEEEECCCCCCCCcEEEeCchhhCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCccCCCcCCEE
Confidence 589999999999988 899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEec
Q 047991 88 HIHIVP 93 (146)
Q Consensus 88 HiHIIP 93 (146)
|+||||
T Consensus 81 H~hiiP 86 (86)
T cd00468 81 HLHVLP 86 (86)
T ss_pred EEEeCC
Confidence 999998
No 9
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms]
Probab=99.83 E-value=5.7e-20 Score=128.49 Aligned_cols=89 Identities=19% Similarity=0.334 Sum_probs=78.8
Q ss_pred ccceeccc---ccCCccEEEECCcEEEEEeCCC-----------cc---cCCCCCCCHHHHHHHHHHHHHHHHHhhhhcC
Q 047991 4 EYYQFGPH---KIDAKDVFYTTPLSFVMVNLRP-----------RE---VKRFADLTADEICDLWLTARKVGRQLEVYHK 66 (146)
Q Consensus 4 ~~~~f~~~---~ip~~~vv~e~d~~~af~di~P-----------~H---~~~~~dL~~ee~~~l~~~~~~v~~~l~~~~~ 66 (146)
..|.||+. +|| +.+|||||.++||.|+.| +| .+...|.+++.+..++.+++++++++. -
T Consensus 16 ~~tIF~kIi~keIP-a~ii~Edd~~lAF~Di~Pqap~HfLvIPK~hi~~~s~aed~~~e~Lg~ll~~~k~vak~~G---l 91 (127)
T KOG3275|consen 16 APTIFCKIIRKEIP-AKIIFEDDRCLAFHDIAPQAPGHFLVIPKKHITQLSKAEDRDDELLGHLLPVAKKVAKALG---L 91 (127)
T ss_pred CCcEeeeeecccCC-cceEeeccceEEEEecCCCCCceEEEeecccccchhhcccCCHHHHHHHHHHHHHHHHHhC---c
Confidence 67899987 677 899999999999999999 67 455777888999999999999998875 2
Q ss_pred CCceEEEEecCCCCCCccCeEEEEEeccCC
Q 047991 67 ASSLTLNIQDGPQAGQSVPHVHIHIVPRKE 96 (146)
Q Consensus 67 ~~~~ni~~n~g~~~gq~v~H~HiHIIPR~~ 96 (146)
.+|||+++|||+.++|+|+|+|+||||++.
T Consensus 92 ~~gYrvv~NnG~~g~QsV~HvH~HvlgGrq 121 (127)
T KOG3275|consen 92 EDGYRVVQNNGKDGHQSVYHVHLHVLGGRQ 121 (127)
T ss_pred ccceeEEEcCCcccceEEEEEEEEEeCCcc
Confidence 578999999999999999999999999664
No 10
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=99.77 E-value=3e-18 Score=118.37 Aligned_cols=86 Identities=19% Similarity=0.274 Sum_probs=75.7
Q ss_pred cceecccc---cC-CccEEEECCcEEEEEeCCC-----------cccCCCCCCCHHHHHHHHHHHHHHHHHhhhh--cCC
Q 047991 5 YYQFGPHK---ID-AKDVFYTTPLSFVMVNLRP-----------REVKRFADLTADEICDLWLTARKVGRQLEVY--HKA 67 (146)
Q Consensus 5 ~~~f~~~~---ip-~~~vv~e~d~~~af~di~P-----------~H~~~~~dL~~ee~~~l~~~~~~v~~~l~~~--~~~ 67 (146)
.|.||+.. ++ ++++||+|+.++||+|.+| +|+.++.+|+++++.+++.+++.+.+.+++. +++
T Consensus 1 ~c~fc~i~~~e~~~~~~iv~~~~~~~a~~~~~p~~~~h~lIiPk~h~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~ 80 (104)
T cd01278 1 LCHFCDIAKRRDPDPEDQVYEDDRVVVFKDIYPKARHHYLVIPKEHIASLKALTKEDVPLLEHMETVGREKLLRSDNTDP 80 (104)
T ss_pred CCccccCccCCCCCCccEEEeCCCEEEEECCCCCCCceEEEEecCCCCChHHCCHhHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 47888863 22 4799999999999999988 8999999999999999999999888877765 678
Q ss_pred CceEEEEecCCCCCCccCeEEEEEe
Q 047991 68 SSLTLNIQDGPQAGQSVPHVHIHIV 92 (146)
Q Consensus 68 ~~~ni~~n~g~~~gq~v~H~HiHII 92 (146)
++||+++|+|+. |+|+|+|+|||
T Consensus 81 ~~~n~g~h~~p~--~~v~H~H~Hvi 103 (104)
T cd01278 81 SEFRFGFHAPPF--TSVSHLHLHVI 103 (104)
T ss_pred cCeEEEeCCCCC--cCeeeEEEEee
Confidence 899999999875 89999999998
No 11
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=99.77 E-value=2.8e-18 Score=140.67 Aligned_cols=105 Identities=16% Similarity=0.218 Sum_probs=89.3
Q ss_pred ccceeccc---ccC-CccEEEECCcEEEEEeCCC-----------cccCCCCCCCHHHHHHHHHHHHHHHHHhhhhcC-C
Q 047991 4 EYYQFGPH---KID-AKDVFYTTPLSFVMVNLRP-----------REVKRFADLTADEICDLWLTARKVGRQLEVYHK-A 67 (146)
Q Consensus 4 ~~~~f~~~---~ip-~~~vv~e~d~~~af~di~P-----------~H~~~~~dL~~ee~~~l~~~~~~v~~~l~~~~~-~ 67 (146)
..|.||+. +++ ..++|+||++|+||+++.| +|+.++.+|+++++.+|+.+++++.+++++.++ .
T Consensus 184 g~clfcdii~~E~~~~~riV~end~~va~~p~~~~~P~e~lIiPKrH~~~~~dl~~~e~~~La~~l~~v~~~l~~~~~~~ 263 (329)
T cd00608 184 GRCLLCDYLKLELESKERIVVENEHFVAVVPFWARWPFEVHILPKRHVSRFTDLTDEEREDLAEILKRLLARYDNLFNCS 263 (329)
T ss_pred CCccHHHHHHhhhhcCCeEEEeCCCEEEEEecCCCCCcEEEEecCCCcCChhHCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 46889986 343 3699999999999997654 899999999999999999999999999999999 6
Q ss_pred CceEEEEecCCCC----CCccCeEEEEEeccCCCCCCCChhhhhh
Q 047991 68 SSLTLNIQDGPQA----GQSVPHVHIHIVPRKESDFENNDEIYDA 108 (146)
Q Consensus 68 ~~~ni~~n~g~~~----gq~v~H~HiHIIPR~~~d~~~~~~~~~~ 108 (146)
.+||+++|+++.. |+.++|||+||+||+.++..+.-..++.
T Consensus 264 ~pyn~~~h~~P~~~~~~~~~~~H~Hihi~Pr~~~~~~~~~aGfE~ 308 (329)
T cd00608 264 FPYSMGWHQAPTGGKELENWYYHWHFEIPPRRSATVLKFMAGFEL 308 (329)
T ss_pred CCeEEEEeccCCCCCcCCcceEEEEEEeCCCcCCCceeeeEEeec
Confidence 7999999999876 4789999999999998665555455554
No 12
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=99.76 E-value=3.8e-18 Score=140.83 Aligned_cols=105 Identities=17% Similarity=0.185 Sum_probs=88.6
Q ss_pred ccceeccc---ccC-CccEEEECCcEEEEEeCCC-----------cccCCCCCCCHHHHHHHHHHHHHHHHHhhhhcCCC
Q 047991 4 EYYQFGPH---KID-AKDVFYTTPLSFVMVNLRP-----------REVKRFADLTADEICDLWLTARKVGRQLEVYHKAS 68 (146)
Q Consensus 4 ~~~~f~~~---~ip-~~~vv~e~d~~~af~di~P-----------~H~~~~~dL~~ee~~~l~~~~~~v~~~l~~~~~~~ 68 (146)
..|.||++ +++ ++++|+||++|+||+|++| +|+.+|.+|+++++.+|+.+++++.+++++.++.+
T Consensus 194 g~clfcdIi~~E~~~~~riV~End~fvAf~p~~p~~Pgh~lIiPKrH~~~~~dl~d~e~~~La~~lk~v~~~l~~~~~~~ 273 (347)
T TIGR00209 194 KSPMLVDYVKRELADKSRTVVETEHWIAVVPYWAIWPFETLLLPKAHVLRITDLTDAQRSDLALILKKLTSKYDNLFETS 273 (347)
T ss_pred CCccHHHHHHhHhhcCCeEEEECCCEEEEeccCCCCCCeEEEeeccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 46888887 442 4799999999999999877 89999999999999999999999999999999654
Q ss_pred -ceEEEEecCCCCCC--ccCeEEEEEeccCC--CCCCCChhhhhh
Q 047991 69 -SLTLNIQDGPQAGQ--SVPHVHIHIVPRKE--SDFENNDEIYDA 108 (146)
Q Consensus 69 -~~ni~~n~g~~~gq--~v~H~HiHIIPR~~--~d~~~~~~~~~~ 108 (146)
+||+++|+++..|+ ..+|||+||+||+. .+..+....||.
T Consensus 274 ~pYn~~~h~~p~~~~~~~~~H~HihiiPrl~R~~~~~k~~aGfE~ 318 (347)
T TIGR00209 274 FPYSMGWHGAPFNGEENQHWQLHAHFYPPLLRSATVRKFMVGYEM 318 (347)
T ss_pred CCcceeEEecccCCCCCcEEEEEEEEeCCcccccccccceeehhh
Confidence 99999999998776 55689999999963 233456666775
No 13
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=99.75 E-value=5.1e-18 Score=140.02 Aligned_cols=105 Identities=18% Similarity=0.191 Sum_probs=87.6
Q ss_pred ccceeccc---ccCC-ccEEEECCcEEEEEeCCC-----------cccCCCCCCCHHHHHHHHHHHHHHHHHhhhhcCCC
Q 047991 4 EYYQFGPH---KIDA-KDVFYTTPLSFVMVNLRP-----------REVKRFADLTADEICDLWLTARKVGRQLEVYHKAS 68 (146)
Q Consensus 4 ~~~~f~~~---~ip~-~~vv~e~d~~~af~di~P-----------~H~~~~~dL~~ee~~~l~~~~~~v~~~l~~~~~~~ 68 (146)
..|.||++ +++. +++|+||++|+||+|++| +|+.+|.+|+++++.+|+.+++++.+++++.++.+
T Consensus 194 g~Clfcdii~~E~~~~~RiV~End~fvAf~p~~p~~P~h~lIiPKrH~~~~~dl~dee~~~La~~lk~v~~~l~~~~~~~ 273 (346)
T PRK11720 194 GSPLLVDYVQRELADGERIVVETEHWLAVVPYWAAWPFETLLLPKAHVLRLTDLTDAQRDDLALALKKLTSRYDNLFQCS 273 (346)
T ss_pred CCeEHHHHHHhhhhcCCeEEEECCCEEEEeccccCCCCeEEEecccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 46889987 5542 599999999999999776 89999999999999999999999999999999655
Q ss_pred -ceEEEEecCCCCC--CccCeEEEEEeccCC-CC-CCCChhhhhh
Q 047991 69 -SLTLNIQDGPQAG--QSVPHVHIHIVPRKE-SD-FENNDEIYDA 108 (146)
Q Consensus 69 -~~ni~~n~g~~~g--q~v~H~HiHIIPR~~-~d-~~~~~~~~~~ 108 (146)
+||+++|+++..| |.++|||+||+||+. ++ ..+.-..||.
T Consensus 274 ~pyn~~~h~~p~~~~~~~~~H~HihiiPrl~Rs~~~~k~~aGfE~ 318 (346)
T PRK11720 274 FPYSMGWHGAPFNGEENDHWQLHAHFYPPLLRSATVRKFMVGYEM 318 (346)
T ss_pred CCCceeEEecccCCCCCeeEEEEEEEeCCccCccccccceeeeec
Confidence 7999999998654 678999999999964 22 2334445664
No 14
>PLN02643 ADP-glucose phosphorylase
Probab=99.67 E-value=3e-16 Score=129.11 Aligned_cols=93 Identities=12% Similarity=0.121 Sum_probs=80.7
Q ss_pred ccceecccccCCccEEEECCcEEEEEeCCC-----------cccCCCCCCCHHHHHHHHHHHHHHHHHhhhhcCCCceEE
Q 047991 4 EYYQFGPHKIDAKDVFYTTPLSFVMVNLRP-----------REVKRFADLTADEICDLWLTARKVGRQLEVYHKASSLTL 72 (146)
Q Consensus 4 ~~~~f~~~~ip~~~vv~e~d~~~af~di~P-----------~H~~~~~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni 72 (146)
..|.||+..-- ..+|+||++|+||++..| +|+.+|.+|+++++.+|+.+++++.+++++.++.++||+
T Consensus 198 g~Clfcdii~~-E~iV~en~~f~Af~p~ap~~P~evlIiPKrH~~~~~dl~~~e~~~La~ilk~v~~~l~~~~~~~pyN~ 276 (336)
T PLN02643 198 GKCSLCEVVKK-DLLIDESSHFVSIAPFAATFPFEIWIIPRDHSSNFHEIDDDKAVDLGGLLKLMLQKISKQLNDPPYNY 276 (336)
T ss_pred CCCcHHHHHhC-ccEEEeCCCEEEEeccccCCCCEEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCcee
Confidence 46889986432 238999999999999776 899999999999999999999999999999999999999
Q ss_pred EEecCCC--CCC--ccCeEEEEEeccCCC
Q 047991 73 NIQDGPQ--AGQ--SVPHVHIHIVPRKES 97 (146)
Q Consensus 73 ~~n~g~~--~gq--~v~H~HiHIIPR~~~ 97 (146)
++|+|+. +++ ...|||+||+||+..
T Consensus 277 ~~~~~P~~~~~~~~~~~H~hihi~PRl~~ 305 (336)
T PLN02643 277 MIQTSPLGVEESNLPYTHWFLQIVPQLSG 305 (336)
T ss_pred eeecCCCccccCcccceEEEEEEecCcCC
Confidence 9999997 345 446777899999855
No 15
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=99.11 E-value=1.7e-10 Score=81.61 Aligned_cols=86 Identities=20% Similarity=0.281 Sum_probs=59.7
Q ss_pred ceeccccc--CCccEEEECCcEEEEEeCCC-----------c-ccCCCCCCCHHHHHHHHHHHHHHHHHhhhhc----CC
Q 047991 6 YQFGPHKI--DAKDVFYTTPLSFVMVNLRP-----------R-EVKRFADLTADEICDLWLTARKVGRQLEVYH----KA 67 (146)
Q Consensus 6 ~~f~~~~i--p~~~vv~e~d~~~af~di~P-----------~-H~~~~~dL~~ee~~~l~~~~~~v~~~l~~~~----~~ 67 (146)
|.||...- .+++++|+|+.+++|.|++| + |+.++.+|+.+.+.-|..+.....+.+++.+ ..
T Consensus 2 cif~~i~~~~~~~~vly~d~~~v~~~D~~P~a~~H~LviPk~~~i~sl~~L~~~~~~lL~~m~~~~~~~~~~~~~~~~~~ 81 (116)
T PF11969_consen 2 CIFCIIIRGEEPERVLYEDDDFVVFKDIYPKAPVHLLVIPKDPHIRSLRDLTPEHLPLLERMREVARELLKEEYPGDLDS 81 (116)
T ss_dssp HHHHHHTTSSSGGGESEEETSEEEEE-TT-SCCEEEEEEESSSS-SSGGG--GGGHHHHHHHHHHHHHHHHHHH-TT-EG
T ss_pred ccceEeEcCCCCCcEEEEeCCEEEeeCCCCCcCcEEEEEeecCCCCChHHcCHHHHHHHHHHHHHHHHHHHHhcccccch
Confidence 55665532 14799999999999999999 5 9999999998876666666555555555554 35
Q ss_pred CceEEEEecCCCCCCccCeEEEEEeccC
Q 047991 68 SSLTLNIQDGPQAGQSVPHVHIHIVPRK 95 (146)
Q Consensus 68 ~~~ni~~n~g~~~gq~v~H~HiHIIPR~ 95 (146)
..++++++..| ++.|+|+|+|...
T Consensus 82 ~~~~~gfH~~P----S~~HLHlHvi~~~ 105 (116)
T PF11969_consen 82 DDIRLGFHYPP----SVYHLHLHVISPD 105 (116)
T ss_dssp GGEEEEEESS-----SSSS-EEEEEETT
T ss_pred hhhcccccCCC----CcceEEEEEccCC
Confidence 68999998665 8999999999943
No 16
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.
Probab=99.09 E-value=7.3e-10 Score=83.06 Aligned_cols=106 Identities=20% Similarity=0.274 Sum_probs=63.5
Q ss_pred ccceecccc----cCCccEEEECCcEEEEEeC---CC--------cccCCCCCCCHHHHHHHHHHHHHHHHHhhhhcC-C
Q 047991 4 EYYQFGPHK----IDAKDVFYTTPLSFVMVNL---RP--------REVKRFADLTADEICDLWLTARKVGRQLEVYHK-A 67 (146)
Q Consensus 4 ~~~~f~~~~----ip~~~vv~e~d~~~af~di---~P--------~H~~~~~dL~~ee~~~l~~~~~~v~~~l~~~~~-~ 67 (146)
.+|-||++. -...+||++|++|++|++. +| +|+.+|.+++++|..+|+.+++.+.+++.+.++ +
T Consensus 13 Gs~L~~D~~~~E~~~~~Riv~en~~f~a~vP~~a~wP~ev~ilpkrh~~~l~~l~~~E~~dlA~~l~~i~~r~d~lf~~~ 92 (166)
T PF02744_consen 13 GSCLFCDHLQMELAEGERIVYENEHFVAFVPFAARWPFEVWILPKRHVPSLADLTDEERDDLAAILKPILRRYDNLFETS 92 (166)
T ss_dssp SS-HHHHHHHHHHHH-TTEEEE-SSEEEE--TT--STT-EEEEESS--SSGGG--HHHHHHHHHHHHHHHHHHHHHCTS-
T ss_pred CCchHHHHHHHhhcCCCEEEEECCceEEEEECcccCCcEEEEecCCChhhHHHhhhHHHhhHHHHHHHHHHHhcccCCCC
Confidence 356677662 2347999999999999974 45 999999999999999999999999999999998 5
Q ss_pred CceEEEEecCCCCCCcc---CeEEEEEeccCCCCCCCChhhhhhh
Q 047991 68 SSLTLNIQDGPQAGQSV---PHVHIHIVPRKESDFENNDEIYDAL 109 (146)
Q Consensus 68 ~~~ni~~n~g~~~gq~v---~H~HiHIIPR~~~d~~~~~~~~~~l 109 (146)
..|++++++.|..+..- +|+|+.+-...+....+..++++.|
T Consensus 93 ~pY~m~ihqaP~~~~~~~~~fH~H~e~~~ir~~~i~k~~vG~e~l 137 (166)
T PF02744_consen 93 FPYNMGIHQAPVNGEDPEHWFHPHFEPPHIRSENIGKFEVGLEIL 137 (166)
T ss_dssp --EEEEEE---SSSS--TT--EEEEE--BESSTTEB----THHHH
T ss_pred CCCchhhhcCCCCcccchhhhhcccccccccccccceeeeeHhhh
Confidence 69999999988766544 5555554223333334444455554
No 17
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=98.96 E-value=5.2e-09 Score=85.98 Aligned_cols=94 Identities=17% Similarity=0.213 Sum_probs=75.9
Q ss_pred CccEEEECCcEEEEEeCCC-----------cccCCCCCCCHHHHHHHHHHHHHHHHHhhhhcCCC-ceEEEEecCCCC-C
Q 047991 15 AKDVFYTTPLSFVMVNLRP-----------REVKRFADLTADEICDLWLTARKVGRQLEVYHKAS-SLTLNIQDGPQA-G 81 (146)
Q Consensus 15 ~~~vv~e~d~~~af~di~P-----------~H~~~~~dL~~ee~~~l~~~~~~v~~~l~~~~~~~-~~ni~~n~g~~~-g 81 (146)
.+|+|.++++|+||++..+ +|+..+.++++++..+|+.+++.+...+.+.++.. .|+++++.-+.. .
T Consensus 200 ~~R~v~e~~~~~a~~Pf~a~~pfEv~i~pk~hv~~l~~~sdee~~~lA~ilk~~~~~y~~~~~~~fpY~m~~h~ap~~~~ 279 (338)
T COG1085 200 GERIVVENDHFLAFVPFWARWPFEVLIYPKEHVSFLTDLSDEELKDLAEILKKLLARYDNLFGNSFPYSMGFHQAPFNEV 279 (338)
T ss_pred CceEEecCceeEEeccccccCceEEEeccHHHhhhhhhCCHHHHHHHHHHHHHHHHHHhhccCCCCceeeeeecCCCCcc
Confidence 4699999999999997533 99999999999999999999999999999998877 899999876533 3
Q ss_pred CccCeEEEEEec---cCCCCCCCChhhhhhh
Q 047991 82 QSVPHVHIHIVP---RKESDFENNDEIYDAL 109 (146)
Q Consensus 82 q~v~H~HiHIIP---R~~~d~~~~~~~~~~l 109 (146)
+...|+|+|++| |..+- .+.-..|+.+
T Consensus 280 ~~~~~~h~~~~p~~~R~~t~-~k~~~g~e~~ 309 (338)
T COG1085 280 NEHYHLHAEIYPPLLRSATK-LKFLAGYEMG 309 (338)
T ss_pred cccceEEEEEcccccccccc-cceeeeeecc
Confidence 566799999999 54332 2334455544
No 18
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=98.73 E-value=5.1e-08 Score=78.41 Aligned_cols=97 Identities=22% Similarity=0.273 Sum_probs=80.8
Q ss_pred CCccEEEECCcEEEEEe---CCC--------cccCCCCCCCHHHHHHHHHHHHHHHHHhhhhcCC-CceEEEEecCCCCC
Q 047991 14 DAKDVFYTTPLSFVMVN---LRP--------REVKRFADLTADEICDLWLTARKVGRQLEVYHKA-SSLTLNIQDGPQAG 81 (146)
Q Consensus 14 p~~~vv~e~d~~~af~d---i~P--------~H~~~~~dL~~ee~~~l~~~~~~v~~~l~~~~~~-~~~ni~~n~g~~~g 81 (146)
.+++||.|+++|+++++ +.| +|+.+|.+|++.+..+|+.+++.+..++.+.++. ..|+++++..|..+
T Consensus 213 ~Kervv~enehfivvvPywA~wPfEtllipk~h~~~~~~l~~~~k~dLasiLK~ll~KydnlfetsfPYsmg~h~aPl~~ 292 (354)
T KOG2958|consen 213 EKERVVVENEHFIVVVPYWATWPFETLLIPKRHVSRFHELDEVEKVDLASILKLLLIKYDNLFETSFPYSMGIHGAPLGS 292 (354)
T ss_pred hhceEEeecCceEEEeehhhcCcceeeeechhhhhhhcccchHHHhhHHHHHHHHHHHHHHhhccCCccccccccCCccc
Confidence 45799999999999987 455 9999999999999999999999999999999998 69999998877433
Q ss_pred --Ccc-CeE-EEEEeccC--CCCCCCChhhhhhhH
Q 047991 82 --QSV-PHV-HIHIVPRK--ESDFENNDEIYDALD 110 (146)
Q Consensus 82 --q~v-~H~-HiHIIPR~--~~d~~~~~~~~~~l~ 110 (146)
++. .|| |+|+.|.. ...+.+....|+.|+
T Consensus 293 t~~e~~n~W~h~hFyppllrsatV~kF~vG~e~l~ 327 (354)
T KOG2958|consen 293 TEQENYNHWLHMHFYPPLLRSATVRKFLVGYEMLA 327 (354)
T ss_pred ccccccchhhhhhccccchhhccccceeechhhhc
Confidence 333 366 99999864 344567888899887
No 19
>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only]
Probab=98.50 E-value=8.9e-07 Score=64.27 Aligned_cols=90 Identities=11% Similarity=0.190 Sum_probs=64.1
Q ss_pred Cccceeccccc----CCccEEEECCcEEEEEeCCC-----------cccCCCCCCCHHHH---HHHHHHHHHHHHHhhhh
Q 047991 3 IEYYQFGPHKI----DAKDVFYTTPLSFVMVNLRP-----------REVKRFADLTADEI---CDLWLTARKVGRQLEVY 64 (146)
Q Consensus 3 ~~~~~f~~~~i----p~~~vv~e~d~~~af~di~P-----------~H~~~~~dL~~ee~---~~l~~~~~~v~~~l~~~ 64 (146)
.+.|.||++.- ++.-...||+.+++|-|++| +|+.+..+|+.++. .++....+.+.+.-..
T Consensus 30 ~~~C~FCDia~r~~~~~ell~~En~~~V~fkDikPaA~~HYLvipK~Hi~~~~~L~k~~V~Lve~m~~~G~~~l~r~~~- 108 (166)
T KOG4359|consen 30 KSTCVFCDIAGRQDPGTELLHCENEDLVCFKDIKPAATHHYLVVPKKHIGNCRTLRKDQVELVENMVTVGKTILERNNF- 108 (166)
T ss_pred CCceEEEEeecccCCCCceeEecCCcEEEEecCCccccceEEEechHHcCChhhcchhhHHHHHHHHHHHHHHHHHhcc-
Confidence 35899999954 33455779999999999999 78999999987653 3344444444333221
Q ss_pred cCCCceEEEEecCCCCCCccCeEEEEEeccC
Q 047991 65 HKASSLTLNIQDGPQAGQSVPHVHIHIVPRK 95 (146)
Q Consensus 65 ~~~~~~ni~~n~g~~~gq~v~H~HiHIIPR~ 95 (146)
..++-..++++..| --+|.|+|+|+|-..
T Consensus 109 td~~~~r~GFHLPP--f~SV~HLHlH~I~P~ 137 (166)
T KOG4359|consen 109 TDFTNVRMGFHLPP--FCSVSHLHLHVIAPV 137 (166)
T ss_pred CCchheeEeccCCC--cceeeeeeEeeecch
Confidence 34566778887765 457999999999754
No 20
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=97.51 E-value=0.0026 Score=45.36 Aligned_cols=88 Identities=11% Similarity=0.207 Sum_probs=62.5
Q ss_pred CCccceeccc--ccCCccEEEECCcEEEEEeCCC-----------cccCCCCCCCHHHHHHHHHHHHHHHHHhhhhcCCC
Q 047991 2 SIEYYQFGPH--KIDAKDVFYTTPLSFVMVNLRP-----------REVKRFADLTADEICDLWLTARKVGRQLEVYHKAS 68 (146)
Q Consensus 2 ~~~~~~f~~~--~ip~~~vv~e~d~~~af~di~P-----------~H~~~~~dL~~ee~~~l~~~~~~v~~~l~~~~~~~ 68 (146)
+.+.|.||=- .++...||.-+++++.-++-.| .|++++.+++++.|.++...-+.+.+...+ .|.+
T Consensus 9 ~~~~C~fCl~n~~~~khliisiG~~~YLalpkg~L~~gH~lIvPi~H~~s~~~~de~~~~Ei~~f~~~L~~mf~~-~~~~ 87 (121)
T PF04677_consen 9 APDNCWFCLSNPNVEKHLIISIGDEVYLALPKGPLVPGHCLIVPIQHVPSLTELDEEVWEEIRNFQKSLRKMFAS-QGKD 87 (121)
T ss_pred CCCCCCCccCCCCccceEEEEEcCcEEEEeCCCCccCCEEEEEecceecccccCCHHHHHHHHHHHHHHHHHHHH-cCCC
Confidence 3567777732 3445688999999998887544 899999999999999999877766666544 3433
Q ss_pred ceEEEEecCCCCCCccCeEEEEEeccC
Q 047991 69 SLTLNIQDGPQAGQSVPHVHIHIVPRK 95 (146)
Q Consensus 69 ~~ni~~n~g~~~gq~v~H~HiHIIPR~ 95 (146)
+ +.+-.. .....|.|+++||=.
T Consensus 88 -v-vf~E~~---~~~~~H~~iq~vPvp 109 (121)
T PF04677_consen 88 -V-VFFERV---RKRNPHTHIQCVPVP 109 (121)
T ss_pred -E-EEEEEe---CCCCcEEEEEEEEcC
Confidence 2 222221 455789999999943
No 21
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=97.14 E-value=0.0017 Score=53.44 Aligned_cols=61 Identities=20% Similarity=0.240 Sum_probs=49.8
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccCeEEEEEecc
Q 047991 34 REVKRFADLTADEICDLWLTARKVGRQLEVYHKASSLTLNIQDGPQAGQSVPHVHIHIVPR 94 (146)
Q Consensus 34 ~H~~~~~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~gq~v~H~HiHIIPR 94 (146)
.|..++.+++.+++..++.+.+.-.+.+.+.-+..-+.+.-|.|+.+|.+.+|-|..|+.-
T Consensus 102 ~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~~~~~yv~if~N~G~~aGaSl~HpH~Qi~a~ 162 (329)
T cd00608 102 DHNLTLAEMSVAEIREVVEAWAERTRELGKNPRIKYVQIFENKGAEMGASLPHPHGQIWAL 162 (329)
T ss_pred cccCChhhCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeecCcccccCCCCCCeeeeeC
Confidence 7888899999999999999988887777653344445566789999999999999998763
No 22
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=97.05 E-value=0.0018 Score=53.64 Aligned_cols=60 Identities=27% Similarity=0.309 Sum_probs=52.0
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccCeEEEEEec
Q 047991 34 REVKRFADLTADEICDLWLTARKVGRQLEVYHKASSLTLNIQDGPQAGQSVPHVHIHIVP 93 (146)
Q Consensus 34 ~H~~~~~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~gq~v~H~HiHIIP 93 (146)
.|..++.+++.+++.+++.+.+...+.|.+.-...-+.+..|.|+..|-+.+|-|.-|+.
T Consensus 103 ~H~~~l~~~~~~~~~~vv~~~~e~~~~L~~~~~~~yV~iF~N~Gk~~G~S~~HPH~Qi~a 162 (338)
T COG1085 103 DHSKTLPELPVEEIEEVVKLWQERVRELYEREKYKYVQIFENKGKAAGASLPHPHGQIVA 162 (338)
T ss_pred cccCccccCCHHHHHHHHHHHHHHHHHHhhccCcceEEeeeccCcccCccCCCCCcceee
Confidence 688999999999999999999999988887655666778889999999999998887654
No 23
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=96.36 E-value=0.017 Score=48.10 Aligned_cols=58 Identities=19% Similarity=0.180 Sum_probs=49.4
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccCeEEEEEec
Q 047991 34 REVKRFADLTADEICDLWLTARKVGRQLEVYHKASSLTLNIQDGPQAGQSVPHVHIHIVP 93 (146)
Q Consensus 34 ~H~~~~~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~gq~v~H~HiHIIP 93 (146)
+|..+|.+|+.+++..++.+.+.-.+.+.+. ..=+.+.-|.|+.+|.+.+|-|.-|+.
T Consensus 114 ~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~--i~yv~iF~N~G~~~GaSl~HPH~Qi~a 171 (346)
T PRK11720 114 DHSKTLPELSVAALREVVDTWQEQTAELGKT--YPWVQVFENKGAAMGCSNPHPHGQIWA 171 (346)
T ss_pred CcCCChhHCCHHHHHHHHHHHHHHHHHHHhC--CcEEEEEeecCcccCcCCCCCceeeee
Confidence 7999999999999999999998888887764 444556668899999999999998876
No 24
>KOG3969 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=0.023 Score=45.86 Aligned_cols=59 Identities=22% Similarity=0.294 Sum_probs=48.7
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHhhhhcC--CCceEEEEecCCCCCCccCeEEEEEec-cCC
Q 047991 34 REVKRFADLTADEICDLWLTARKVGRQLEVYHK--ASSLTLNIQDGPQAGQSVPHVHIHIVP-RKE 96 (146)
Q Consensus 34 ~H~~~~~dL~~ee~~~l~~~~~~v~~~l~~~~~--~~~~ni~~n~g~~~gq~v~H~HiHIIP-R~~ 96 (146)
+-+.++-||.++++.=|..+-+++..++...|| ++-+.+.+|-. -+..|+|+||++ ++.
T Consensus 198 ~dikSiRDL~~~h~~lL~n~r~k~~~~i~~~y~v~~dqlrmf~HYq----PSyYHlHVHi~nik~~ 259 (310)
T KOG3969|consen 198 RDIKSIRDLRPSHLQLLRNIRNKSREAIPQRYGVDPDQLRMFFHYQ----PSYYHLHVHIVNIKHD 259 (310)
T ss_pred CCcchhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCchhEEEEEEec----CceEEEEEEEEeccCC
Confidence 568899999999999999999999998888776 45777888743 356799999999 555
No 25
>PF01087 GalP_UDP_transf: Galactose-1-phosphate uridyl transferase, N-terminal domain; InterPro: IPR005849 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C 1Z84_B 1ZWJ_A 2Q4L_A 2H39_B 2Q4H_A.
Probab=95.98 E-value=0.023 Score=43.03 Aligned_cols=60 Identities=25% Similarity=0.377 Sum_probs=44.6
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccCeEEEEEec
Q 047991 34 REVKRFADLTADEICDLWLTARKVGRQLEVYHKASSLTLNIQDGPQAGQSVPHVHIHIVP 93 (146)
Q Consensus 34 ~H~~~~~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~gq~v~H~HiHIIP 93 (146)
+|-.+|.+|+.++...++.+.+.-.+.+.+.-.+.=+.+.=|.|..+|.+..|-|--|+.
T Consensus 119 ~h~~~~~~~~~~~~~~i~~a~~~r~~~l~~~~~~~yv~~FeN~G~~~GaSl~HpHsQi~a 178 (183)
T PF01087_consen 119 KHERTLADMSVKEIKEILKAWRDRYRELSSDKYIKYVLIFENEGYEAGASLPHPHSQIIA 178 (183)
T ss_dssp STT--GGGS-HHHHHHHHHHHHHHHHHHCT-TT-SEEEEEEEESGGGT-SSSSSEEEEEE
T ss_pred CCCCChhhCCHHHHHHHHHHHHHHHHHHhccCCcceEEEEEecCCcCCCCCCCCceEEec
Confidence 788899999999999999998877777766545555666668899999999999988874
No 26
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=95.84 E-value=0.05 Score=45.30 Aligned_cols=58 Identities=19% Similarity=0.223 Sum_probs=48.5
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccCeEEEEEec
Q 047991 34 REVKRFADLTADEICDLWLTARKVGRQLEVYHKASSLTLNIQDGPQAGQSVPHVHIHIVP 93 (146)
Q Consensus 34 ~H~~~~~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~gq~v~H~HiHIIP 93 (146)
+|-.++.+|+.+++..++.+-+.-.+.+.. +..=+.+.-|.|..+|.+.+|-|--|+.
T Consensus 114 ~H~~~l~~m~~~~i~~v~~~~~~r~~~l~~--~i~yv~iF~N~G~~~GaSl~HPH~Qi~a 171 (347)
T TIGR00209 114 DHSKTLPELSVAALTEIVKTWQEQTAELGK--TYPWVQIFENKGAAMGCSNPHPHGQIWA 171 (347)
T ss_pred CccCChhHCCHHHHHHHHHHHHHHHHHHHh--CCcEEEEEeecCcccCcCCCCCceeeee
Confidence 788999999999999999998888777773 3444556668899999999999988876
No 27
>PLN02643 ADP-glucose phosphorylase
Probab=94.51 E-value=0.11 Score=43.00 Aligned_cols=60 Identities=23% Similarity=0.300 Sum_probs=49.5
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccCeEEEEEec
Q 047991 34 REVKRFADLTADEICDLWLTARKVGRQLEVYHKASSLTLNIQDGPQAGQSVPHVHIHIVP 93 (146)
Q Consensus 34 ~H~~~~~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~gq~v~H~HiHIIP 93 (146)
+|..++.+|+.+++..++.+-+.-.+.+...-+..=+.+.-|.|+.+|.+.+|-|.-|+.
T Consensus 116 ~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~~~i~yv~iF~N~G~~aGaSl~HPH~Qi~a 175 (336)
T PLN02643 116 VHSVQLSDLPARHIGEVLKAYKKRINQLQSDSRFKYVQVFKNHGASAGASMSHSHSQIIA 175 (336)
T ss_pred ccCCChHHCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecCccCCcCCCCCceeeEe
Confidence 788899999999999999998877777765433445556779999999999999999887
No 28
>COG5075 Uncharacterized conserved protein [Function unknown]
Probab=92.26 E-value=0.17 Score=40.37 Aligned_cols=74 Identities=20% Similarity=0.239 Sum_probs=51.6
Q ss_pred ccEEEECCcEEEEEeCCC--------------------cccCCCCCCCHHHHHHHHHHHHHHHHHhhhhc--CCCceEEE
Q 047991 16 KDVFYTTPLSFVMVNLRP--------------------REVKRFADLTADEICDLWLTARKVGRQLEVYH--KASSLTLN 73 (146)
Q Consensus 16 ~~vv~e~d~~~af~di~P--------------------~H~~~~~dL~~ee~~~l~~~~~~v~~~l~~~~--~~~~~ni~ 73 (146)
++|+|||....-=.-+.| ..+.++-||....+.=+..+-+++...+...+ +++.+.+.
T Consensus 155 erivyed~~~~ngfiiiPD~KWd~qt~dsL~l~aIv~~~diktiRDlr~~~i~~l~rl~~kiltevp~~f~vd~n~l~mf 234 (305)
T COG5075 155 ERIVYEDESVINGFIIIPDMKWDGQTVDSLYLVAIVYRTDIKTIRDLRYYHILWLIRLNNKILTEVPYQFGVDPNELRMF 234 (305)
T ss_pred ceeEecCcccccCceeccccccCccceeeeeEEEEEecCCchhhhhCchhhhhHHHhhcccceEecchhcCcChhHeEEE
Confidence 689999987654222333 45677888888888888887777766655444 35567777
Q ss_pred EecCCCCCCccCeEEEEEec
Q 047991 74 IQDGPQAGQSVPHVHIHIVP 93 (146)
Q Consensus 74 ~n~g~~~gq~v~H~HiHIIP 93 (146)
++-. -+.+|+|+||+-
T Consensus 235 vHY~----PsYyhlHvHI~n 250 (305)
T COG5075 235 VHYQ----PSYYHLHVHIVN 250 (305)
T ss_pred EEec----cceEEEEEEEEe
Confidence 7643 356899999986
No 29
>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=89.45 E-value=0.51 Score=35.55 Aligned_cols=73 Identities=15% Similarity=0.252 Sum_probs=38.7
Q ss_pred ccEEEEC-CcEEEEEeCCC---cccCCCCCCC-HHHHHHHHHHHHH----------HHHHhhhhcC----CCceEEEEec
Q 047991 16 KDVFYTT-PLSFVMVNLRP---REVKRFADLT-ADEICDLWLTARK----------VGRQLEVYHK----ASSLTLNIQD 76 (146)
Q Consensus 16 ~~vv~e~-d~~~af~di~P---~H~~~~~dL~-~ee~~~l~~~~~~----------v~~~l~~~~~----~~~~ni~~n~ 76 (146)
++|+.+. |.++++-|-+| -|+- =|+ -+.+..+..+.+. +...+...++ ..-|+++++.
T Consensus 15 e~V~~es~d~vvvIrD~fPKa~~H~L---vLpr~s~i~~l~~~~qe~l~ll~~~h~~~~~~v~~~~~~~~~~~f~vG~Ha 91 (184)
T KOG0562|consen 15 ENVYIESPDDVVVIRDKFPKARMHLL---VLPRRSSIDSLFSVVQEHLSLLKEDHAVGPCWVDQLTNEALCNYFRVGFHA 91 (184)
T ss_pred ceeeccCcccEEEEcccCccceeEEE---EecccchhHHHHHHHHHHhhHhHHHhhcCchHHHHhcchhhhhheeeeecc
Confidence 5566666 78999999999 3421 011 1112222222221 2212222222 2356677764
Q ss_pred CCCCCCccCeEEEEEeccC
Q 047991 77 GPQAGQSVPHVHIHIVPRK 95 (146)
Q Consensus 77 g~~~gq~v~H~HiHIIPR~ 95 (146)
+-+..++|+|||-..
T Consensus 92 ----vPSM~~LHLHVISkD 106 (184)
T KOG0562|consen 92 ----VPSMNNLHLHVISKD 106 (184)
T ss_pred ----CcchhheeEEEeecc
Confidence 446679999999853
No 30
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=87.95 E-value=4.4 Score=30.85 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhcC-CCceEEEEecCCCCCCccCeEEEEEeccCCCC
Q 047991 41 DLTADEICDLWLTARKVGRQLEVYHK-ASSLTLNIQDGPQAGQSVPHVHIHIVPRKESD 98 (146)
Q Consensus 41 dL~~ee~~~l~~~~~~v~~~l~~~~~-~~~~ni~~n~g~~~gq~v~H~HiHIIPR~~~d 98 (146)
+++++++.+ ......+.+.+.+| ..-++..+|. ....||+|+-++|...+.
T Consensus 94 ~~~~e~~~~---~~~~~~~~~~~r~g~~ni~~a~vH~----DE~tPH~H~~~vP~~~~~ 145 (196)
T PF01076_consen 94 DLDPEQQKR---WFEDSLEWLQERYGNENIVSAVVHL----DETTPHMHFDVVPIDEDG 145 (196)
T ss_pred chhhHHHHH---HHHHHHHHHHHHCCchhEEEEEEEC----CCCCcceEEEEeeccccc
Confidence 455555444 44455566666777 4566677774 456899999999987653
No 31
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional
Probab=84.29 E-value=1.6 Score=37.22 Aligned_cols=27 Identities=11% Similarity=0.149 Sum_probs=20.7
Q ss_pred CCCceEEEEecCCCCCCccCeEEEEEec
Q 047991 66 KASSLTLNIQDGPQAGQSVPHVHIHIVP 93 (146)
Q Consensus 66 ~~~~~ni~~n~g~~~gq~v~H~HiHIIP 93 (146)
+.++|.++.|. .-+.-++.|+|+|..-
T Consensus 215 ~~p~frvgYNS-lGA~ASvNHLHFQa~y 241 (403)
T PLN03103 215 NNPYFRVGYNS-LGAFATINHLHFQAYY 241 (403)
T ss_pred CCCcEEEEecC-CccccCcceeeeeecc
Confidence 56789999886 3344589999999765
No 32
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional
Probab=80.35 E-value=9.5 Score=30.56 Aligned_cols=74 Identities=16% Similarity=0.200 Sum_probs=50.4
Q ss_pred ccEEEECCcEEEEEeCC-C--------c---ccCCCCCC---CHHHHHHHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q 047991 16 KDVFYTTPLSFVMVNLR-P--------R---EVKRFADL---TADEICDLWLTARKVGRQLEVYHKASSLTLNIQDGPQA 80 (146)
Q Consensus 16 ~~vv~e~d~~~af~di~-P--------~---H~~~~~dL---~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~ 80 (146)
+..|.....+++|-|+. | . -+++-.-+ ++..+..-+..=..+.+++.+.+..+.+.+.+|. ..
T Consensus 55 C~~Vd~~~gyvvlKD~~Gp~qyLLiPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~lsLaINS--~~ 132 (252)
T PRK05471 55 CAEVDPQAGYVLLKDRNGPLQYLLMPTYRISGIESPLLLEPSTPNYFALAWQARDFMSKKYGKPIPDSAVSLAINS--RY 132 (252)
T ss_pred CeeEccCCCeEEEecCCCCcceEEeecccccCccCccccCCCCccHHHHHHHHhHHHHHhhCCCCChhheEEEecC--CC
Confidence 45555667777777643 2 2 23333323 3456777777777788888888888889999886 35
Q ss_pred CCccCeEEEEE
Q 047991 81 GQSVPHVHIHI 91 (146)
Q Consensus 81 gq~v~H~HiHI 91 (146)
|-+-.|+||||
T Consensus 133 gRSQnQLHIHI 143 (252)
T PRK05471 133 GRTQDQLHIHI 143 (252)
T ss_pred Cccccceeeeh
Confidence 67778999996
No 33
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.22 E-value=19 Score=31.53 Aligned_cols=88 Identities=7% Similarity=0.117 Sum_probs=54.0
Q ss_pred Cccceeccc--ccCCccEEEECCcEEEEEeCCC-----------cccCCCCCCCHHHHHHHHHHHHHHHHHhhhhcCCCc
Q 047991 3 IEYYQFGPH--KIDAKDVFYTTPLSFVMVNLRP-----------REVKRFADLTADEICDLWLTARKVGRQLEVYHKASS 69 (146)
Q Consensus 3 ~~~~~f~~~--~ip~~~vv~e~d~~~af~di~P-----------~H~~~~~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~ 69 (146)
+.+|-||== .+-.--||--+++|++-++--| .|++++..|+++.+.++-.--..+.+. .+..|.+.
T Consensus 318 pg~CwFCLSnP~vEkHLIVsIG~~~YlAlaKGpLs~~HvlIipi~H~p~~~~ls~ev~~Ei~kykaal~~m-yk~~g~~~ 396 (528)
T KOG2476|consen 318 PGSCWFCLSNPNVEKHLIVSIGNHFYLALAKGPLSSDHVLIIPIEHIPSLVPLSAEVTQEINKYKAALRKM-YKKQGKDA 396 (528)
T ss_pred CCceEEEecCCChhhheEEEecceeEEeecCCCCCCCeEEEEEcccccccccCCHHHHHHHHHHHHHHHHH-HHhcCCeE
Confidence 346666632 1112367778888888876555 899999999988887766554444333 33334333
Q ss_pred eEEEEecCCCCCCccCeEEEEEeccCC
Q 047991 70 LTLNIQDGPQAGQSVPHVHIHIVPRKE 96 (146)
Q Consensus 70 ~ni~~n~g~~~gq~v~H~HiHIIPR~~ 96 (146)
+-+-. ...-.-|+|+.+||--.
T Consensus 397 vvfE~-----~~~rs~Hlq~Qvipvpk 418 (528)
T KOG2476|consen 397 VVFER-----QSYRSVHLQLQVIPVPK 418 (528)
T ss_pred EEEEe-----ecccceeeEEEEEeccc
Confidence 22221 12334699999999654
No 34
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=79.12 E-value=7.6 Score=32.01 Aligned_cols=58 Identities=19% Similarity=0.131 Sum_probs=41.3
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccCeEEEEE
Q 047991 34 REVKRFADLTADEICDLWLTARKVGRQLEVYHKASSLTLNIQDGPQAGQSVPHVHIHI 91 (146)
Q Consensus 34 ~H~~~~~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~gq~v~H~HiHI 91 (146)
-|--.+.+++..++..+..+=+++...|.+--..+-+.|.-|.|.+.|-+-+|-|-..
T Consensus 117 nh~ltLp~m~~~~i~~vv~aw~~~~~~l~~h~~y~yvQIFeNkGa~mGcSn~HpHgQ~ 174 (354)
T KOG2958|consen 117 NHNLTLPLMDVVEIRDVVDAWKKLYNELGQHDSYKYVQIFENKGAAMGCSNPHPHGQA 174 (354)
T ss_pred ccccccccCCHHHHHHHHHHHHHHHHHhcccCCcceeeeeccCCcccccCCCCcccce
Confidence 3555678888999999888888887777752222333455588999998888877554
No 35
>KOG2477 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.12 E-value=21 Score=31.64 Aligned_cols=80 Identities=14% Similarity=0.182 Sum_probs=54.5
Q ss_pred ccCCccEEEECCcEEEEEeCCC------------cccCCCCCCCHHHHHHHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q 047991 12 KIDAKDVFYTTPLSFVMVNLRP------------REVKRFADLTADEICDLWLTARKVGRQLEVYHKASSLTLNIQDGPQ 79 (146)
Q Consensus 12 ~ip~~~vv~e~d~~~af~di~P------------~H~~~~~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~ 79 (146)
..|...||--....|..++-.| .|+.+-..|+++.|.++-..-+.++...... +-+ + |..-+.+
T Consensus 417 klpkhlviSlg~~tYLsLp~~~gL~~gHciIvptqH~~~t~slDEdvWDEIrnfrKcL~~Mfas~-n~d-v-iFyE~a~- 492 (628)
T KOG2477|consen 417 KLPKHLVISLGHRTYLSLPTQPGLAKGHCIIVPTQHRINTLSLDEDVWDEIRNFRKCLALMFASM-NLD-V-IFYENAP- 492 (628)
T ss_pred ccccceeEEeccceeEeccccCccccCceEEecccccccccccchHHHHHHHHHHHHHHHHHHhc-CCC-e-EEEeccC-
Confidence 3555677877888888777555 7888888899999999887777666655432 222 2 2222222
Q ss_pred CCCccCeEEEEEeccC
Q 047991 80 AGQSVPHVHIHIVPRK 95 (146)
Q Consensus 80 ~gq~v~H~HiHIIPR~ 95 (146)
.-+.-+|+-||-||--
T Consensus 493 ~l~rrpH~~IeCIPvp 508 (628)
T KOG2477|consen 493 SLQRRPHTAIECIPVP 508 (628)
T ss_pred ccccCCceeEEEeech
Confidence 2245899999999954
No 36
>COG2411 Uncharacterized conserved protein [Function unknown]
Probab=78.09 E-value=11 Score=28.59 Aligned_cols=85 Identities=11% Similarity=0.142 Sum_probs=51.8
Q ss_pred ccceecccccCCccE--EEECCcEEEEEeCCCcccCCCCCCCHHH-HHHHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q 047991 4 EYYQFGPHKIDAKDV--FYTTPLSFVMVNLRPREVKRFADLTADE-ICDLWLTARKVGRQLEVYHKASSLTLNIQDGPQA 80 (146)
Q Consensus 4 ~~~~f~~~~ip~~~v--v~e~d~~~af~di~P~H~~~~~dL~~ee-~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~ 80 (146)
++++||....|+.+. |+.+.+.++-..|.--++..+.+|++|+ ..+=+.-...+.+.|++.++.- ..
T Consensus 26 ~TIR~G~~~~k~g~eVyIh~~g~i~gkAkIk~V~~KrV~ELTdEDAr~DGF~sreELi~~LkriYg~l----------r~ 95 (188)
T COG2411 26 TTIRLGKIVLKPGSEVYIHSGGYIIGKAKIKKVKTKRVSELTDEDARLDGFRSREELIEELKRIYGEL----------RD 95 (188)
T ss_pred EEEecCcccCCCCCEEEEEECCEEEEEEEEEEEEEeeHhhhhHHHHHhcccccHHHHHHHHHHHcCcC----------CC
Confidence 688999666666654 4566777776666554555566777765 3333333444555556555431 13
Q ss_pred CCccCeEEEEEeccCCCC
Q 047991 81 GQSVPHVHIHIVPRKESD 98 (146)
Q Consensus 81 gq~v~H~HiHIIPR~~~d 98 (146)
+..|.++||.++-++...
T Consensus 96 ed~VTIi~Fe~v~~~d~~ 113 (188)
T COG2411 96 EDIVTIIEFEVVEKLDKP 113 (188)
T ss_pred CceEEEEEEEEehhccch
Confidence 456778899888877543
No 37
>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type. Alternate names for this enzyme include CDP-diglyceride hydrolase and CDP-diacylglycerol hydrolase.
Probab=78.00 E-value=11 Score=30.14 Aligned_cols=74 Identities=20% Similarity=0.239 Sum_probs=48.8
Q ss_pred ccEEEECCcEEEEEeCC-C--------cc---cCCCCCC---CHHHHHHHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q 047991 16 KDVFYTTPLSFVMVNLR-P--------RE---VKRFADL---TADEICDLWLTARKVGRQLEVYHKASSLTLNIQDGPQA 80 (146)
Q Consensus 16 ~~vv~e~d~~~af~di~-P--------~H---~~~~~dL---~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~ 80 (146)
+..|.....+++|-|+. | .. ++|-.-+ ++..+..-+..=..+.+++.+.+..+.+.+.+|. ..
T Consensus 54 C~~Vd~~~gyvvlKD~~Gp~qyLLmPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~lsLaINS--~~ 131 (250)
T TIGR00672 54 CAEVKPNAGYVVLKDLNGPLQYLLMPTYRINGTESPLLLDPSTPNFFWLAWQARDFMSKKYGQPIPDRAVSLAINS--RT 131 (250)
T ss_pred cceEcCCCCeEEEeCCCCCceeEEeeccccCCccChhhcCCCCccHHHHHHHHhHHHHHhcCCCCChhheeEEecC--CC
Confidence 44455567777777643 2 22 3332222 3455666666667788888888888888899886 35
Q ss_pred CCccCeEEEEE
Q 047991 81 GQSVPHVHIHI 91 (146)
Q Consensus 81 gq~v~H~HiHI 91 (146)
|-+-.|+||||
T Consensus 132 gRSQnQLHIHI 142 (250)
T TIGR00672 132 GRSQNHFHIHI 142 (250)
T ss_pred CcccccceeeH
Confidence 67778999996
No 38
>COG2134 Cdh CDP-diacylglycerol pyrophosphatase [Lipid metabolism]
Probab=74.10 E-value=27 Score=27.46 Aligned_cols=45 Identities=20% Similarity=0.309 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccCeEEEEEe
Q 047991 46 EICDLWLTARKVGRQLEVYHKASSLTLNIQDGPQAGQSVPHVHIHIV 92 (146)
Q Consensus 46 e~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~gq~v~H~HiHII 92 (146)
-+-.-|++=-.+++++...+....+.+.+|.- .|-+-.|+||||-
T Consensus 100 yf~~AWqAR~fms~kyg~~ipd~dvsLaINs~--~gRtQdqlHIHIS 144 (252)
T COG2134 100 YFYLAWQARDFMSKKYGNPIPDSDVSLAINSK--NGRTQDQLHIHIS 144 (252)
T ss_pred HHHHHHHHHHHHHHHhCCCCCccceEEEecCc--cCccccceEEEEE
Confidence 34444444455777788777777888888753 5666778888863
No 39
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism]
Probab=72.19 E-value=8.9 Score=30.79 Aligned_cols=24 Identities=42% Similarity=0.657 Sum_probs=21.3
Q ss_pred EEEecCCCCCCccCeEEEEEeccC
Q 047991 72 LNIQDGPQAGQSVPHVHIHIVPRK 95 (146)
Q Consensus 72 i~~n~g~~~gq~v~H~HiHIIPR~ 95 (146)
+..|.||.+|.+-+|=|+.++|--
T Consensus 141 vFYNsGp~aGaSq~HkHLQi~pmP 164 (298)
T COG4360 141 VFYNSGPIAGASQDHKHLQIVPMP 164 (298)
T ss_pred EEecCCCCcCcCCCccceeEeecc
Confidence 567999999999999999999954
No 40
>PF03432 Relaxase: Relaxase/Mobilisation nuclease domain ; InterPro: IPR005094 Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalysing trans-esterification [].
Probab=70.85 E-value=7.3 Score=29.83 Aligned_cols=36 Identities=36% Similarity=0.498 Sum_probs=20.4
Q ss_pred cCeEEEEEec-cCCCCC-C--CCh-hhhhhhHHHHHHHHhh
Q 047991 84 VPHVHIHIVP-RKESDF-E--NND-EIYDALDVKEKELKKK 119 (146)
Q Consensus 84 v~H~HiHIIP-R~~~d~-~--~~~-~~~~~l~~~~~~l~~~ 119 (146)
-.|.|+||+= |..-+. . ... ..+..+....++|...
T Consensus 100 ~~h~H~Hivin~v~~~tGk~~~~~~~~~~~~~~~~~~l~~~ 140 (242)
T PF03432_consen 100 TDHPHVHIVINRVDLDTGKKLNPSNKDYRRLREASDELEKE 140 (242)
T ss_pred cCeeeeeEEEeecccccccccccchhHHHHHHHHHHHHHHh
Confidence 4577777665 554432 1 222 2566677777777554
No 41
>PF02611 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3.6.1.26 from EC play a role in the regulation of phospholipid metabolism by inositol, as well as regulating the cellular levels of phosphatidylinositol [].; GO: 0008715 CDP-diacylglycerol diphosphatase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2POF_A.
Probab=67.59 E-value=5.8 Score=31.19 Aligned_cols=75 Identities=23% Similarity=0.238 Sum_probs=39.4
Q ss_pred ccEEEECCcEEEEEeCC-C-----------cccCCCCC---CCHHHHHHHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q 047991 16 KDVFYTTPLSFVMVNLR-P-----------REVKRFAD---LTADEICDLWLTARKVGRQLEVYHKASSLTLNIQDGPQA 80 (146)
Q Consensus 16 ~~vv~e~d~~~af~di~-P-----------~H~~~~~d---L~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~ 80 (146)
+..|-.+..++++-|+. | .-+++-.- -++..|..-+..=..+.+++.+.+..+.+.+.+|.- .
T Consensus 26 C~~Vd~~~gyvvlKd~~G~~qyLL~Pt~rIsGIEsP~Ll~~~~pNyf~~AW~aR~~v~~~~g~~lpd~~lsLaINS~--~ 103 (222)
T PF02611_consen 26 CAQVDLQQGYVVLKDRNGPLQYLLMPTDRISGIESPALLEPRTPNYFADAWQARGFVSQKLGKPLPDDDLSLAINSQ--Y 103 (222)
T ss_dssp SSEEETTTTEEEEE-SSSSS-EEEEESS---STT-GGGGSTTS--HHHHHHHTTHHHHHHHTS---GGGEEEEEB-G--G
T ss_pred CeEEcCCCCEEEEeCCCCCccEEEeeccccCCccChhhcCCCCccHHHHHHHhhHHHHHhcCCCCCccceEEEecCc--c
Confidence 45555566677676642 2 23344222 244566666666667888888888888999999873 4
Q ss_pred CCccCeEEEEEe
Q 047991 81 GQSVPHVHIHIV 92 (146)
Q Consensus 81 gq~v~H~HiHII 92 (146)
|-+-.|+||||=
T Consensus 104 gRsQdQLHIHis 115 (222)
T PF02611_consen 104 GRSQDQLHIHIS 115 (222)
T ss_dssp G-S--S--EEEE
T ss_pred CccccceEeEhh
Confidence 666678888863
No 42
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=42.76 E-value=34 Score=24.68 Aligned_cols=31 Identities=23% Similarity=0.218 Sum_probs=26.4
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHhhhh
Q 047991 34 REVKRFADLTADEICDLWLTARKVGRQLEVY 64 (146)
Q Consensus 34 ~H~~~~~dL~~ee~~~l~~~~~~v~~~l~~~ 64 (146)
||+-++.|++.+++..+...+..+.+.....
T Consensus 1 r~~l~~~dls~~ei~~ll~~A~~lk~~~~~~ 31 (142)
T PF02729_consen 1 RHLLSIKDLSPEEIEALLDLAKELKAAPKKG 31 (142)
T ss_dssp SEBSSGGGS-HHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcCchhhCCHHHHHHHHHHHHHHHhhhhcC
Confidence 6888999999999999999999998877654
No 43
>COG4840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.62 E-value=78 Score=20.27 Aligned_cols=33 Identities=30% Similarity=0.319 Sum_probs=23.8
Q ss_pred hhhhhHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHhh
Q 047991 105 IYDALDVKEKELKKKLDLDEERKDRSPEERIQEANEYRSL 144 (146)
Q Consensus 105 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (146)
.|+.|.+.|+-+++ +.+-||-||++-|++|+++
T Consensus 37 ~~edLtdiy~mvkk-------kenfSpsEmqaiA~eL~rl 69 (71)
T COG4840 37 NYEDLTDIYDMVKK-------KENFSPSEMQAIADELGRL 69 (71)
T ss_pred cHHHHHHHHHHHHH-------hccCCHHHHHHHHHHHHHh
Confidence 46667666655543 3557999999999999875
No 44
>PF01446 Rep_1: Replication protein; InterPro: IPR000989 Replication proteins (rep) are involved in plasmid replication. The Rep protein binds to the plasmid DNA and nicks it at the double strand origin (dso) of replication. The 3'-hydroxyl end created is extended by the host DNA replicase, and the 5' end is displaced during synthesis. At the end of one replication round, Rep introduces a second single stranded break at the dso and ligates the ssDNA extremities generating one double-stranded plasmid and one circular ssDNA form. Complementary strand synthesis of the circular ssDNA is usually initiated at the single-stranded origin by the host RNA polymerase [].; GO: 0003677 DNA binding, 0006260 DNA replication, 0005727 extrachromosomal circular DNA
Probab=39.70 E-value=75 Score=24.97 Aligned_cols=11 Identities=27% Similarity=0.323 Sum_probs=7.1
Q ss_pred cCeEEEEEecc
Q 047991 84 VPHVHIHIVPR 94 (146)
Q Consensus 84 v~H~HiHIIPR 94 (146)
-.|-|+||+=-
T Consensus 79 ~~HPH~Hvll~ 89 (233)
T PF01446_consen 79 SWHPHFHVLLF 89 (233)
T ss_pred eeccceEEEEE
Confidence 36777777643
No 45
>PRK13878 conjugal transfer relaxase TraI; Provisional
Probab=38.69 E-value=84 Score=29.18 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=21.4
Q ss_pred CccCeEEEEEecc-CCCCCC---CChhhhhhhHHHHHHHHh
Q 047991 82 QSVPHVHIHIVPR-KESDFE---NNDEIYDALDVKEKELKK 118 (146)
Q Consensus 82 q~v~H~HiHIIPR-~~~d~~---~~~~~~~~l~~~~~~l~~ 118 (146)
....|+|+||+=- ...+.. .+...|..|...-++|-.
T Consensus 110 ~DTdh~HiHIviNrV~p~g~Ki~d~~~~yr~L~kicreLE~ 150 (746)
T PRK13878 110 HDTDNLHIHIAINKIHPTRHTIHEPYYAYRTLAELCTKLER 150 (746)
T ss_pred CCCCCceeEEEEeeecCCCCeecCchHHHHHHHHHHHHHHH
Confidence 3458999999873 222332 233345566666666644
No 46
>cd00472 Ribosomal_L24e_L24 Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea (L24e, distinct from archaeal L24). L24e/L24 is located on the surface of the large subunit, adjacent to proteins L14 and L3, and near the translation factor binding site. L24e/L24 appears to play a role in the kinetics of peptide synthesis, and may be involved in interactions between the large and small subunits, either directly or through other factors. In mouse, a deletion mutation in L24 has been identified as the cause for the belly spot and tail (Bst) mutation that results in disrupted pigmentation, somitogenesis and retinal cell fate determination. L24 may be an important protein in eukaryotic reproduction: in shrimp, L24 expression is elevated in the ovary, suggesting a role in oogenesis, and in Arabidopsis, L24 has been proposed to have a specific function in gynoecium development. No protein with sequence or structural homology to L24e/L24 has been identifi
Probab=36.63 E-value=44 Score=20.35 Aligned_cols=30 Identities=20% Similarity=0.083 Sum_probs=22.3
Q ss_pred CCCccceecccccCCc---cEEEECCcEEEEEe
Q 047991 1 MSIEYYQFGPHKIDAK---DVFYTTPLSFVMVN 30 (146)
Q Consensus 1 ~~~~~~~f~~~~ip~~---~vv~e~d~~~af~d 30 (146)
|-...|.||.+.|.|+ ..|-.|-.++-|+.
T Consensus 1 m~~~~C~f~g~~I~PG~G~~~Vr~Dgkv~~F~s 33 (54)
T cd00472 1 MKTEKCSFCGYKIYPGHGKMYVRNDGKVFRFCS 33 (54)
T ss_pred CcEEEecCcCCeecCCCccEEEecCCCEEEEEC
Confidence 6678899999999765 45666666777764
No 47
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=34.47 E-value=80 Score=20.61 Aligned_cols=35 Identities=26% Similarity=0.215 Sum_probs=25.8
Q ss_pred hHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHhh
Q 047991 109 LDVKEKELKKKLDLDEERKDRSPEERIQEANEYRSL 144 (146)
Q Consensus 109 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (146)
|....++.|+++..-|+ -.+|+|+..++...|++-
T Consensus 33 lk~Klq~ar~~i~~lpg-i~~s~eeq~~~i~~Le~~ 67 (83)
T PF07544_consen 33 LKHKLQKARAAIRELPG-IDRSVEEQEEEIEELEEQ 67 (83)
T ss_pred HHHHHHHHHHHHHhCCC-ccCCHHHHHHHHHHHHHH
Confidence 44555556667776666 568999999999988764
No 48
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=30.57 E-value=55 Score=23.65 Aligned_cols=30 Identities=7% Similarity=0.100 Sum_probs=21.4
Q ss_pred CCCccceecccccCCc---cEEEECCcEEEEEe
Q 047991 1 MSIEYYQFGPHKIDAK---DVFYTTPLSFVMVN 30 (146)
Q Consensus 1 ~~~~~~~f~~~~ip~~---~vv~e~d~~~af~d 30 (146)
|-+..|.||.+.|.|+ ..|-.|-.++-|+.
T Consensus 2 m~~e~CsFcG~kIyPG~G~~fVR~DGkvf~Fcs 34 (131)
T PRK14891 2 VETRTCDYTGEEIEPGTGTMFVRKDGTVLHFVD 34 (131)
T ss_pred CceeeecCcCCcccCCCCcEEEecCCCEEEEec
Confidence 5677899999999765 44555566666664
No 49
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=28.61 E-value=86 Score=24.95 Aligned_cols=56 Identities=18% Similarity=0.332 Sum_probs=31.7
Q ss_pred EEEEEeccCCCCCCCChhhhhhhHHHHHHHHhhc---CCCCC----CCCCCHHHHHHHHHHHHhhc
Q 047991 87 VHIHIVPRKESDFENNDEIYDALDVKEKELKKKL---DLDEE----RKDRSPEERIQEANEYRSLF 145 (146)
Q Consensus 87 ~HiHIIPR~~~d~~~~~~~~~~l~~~~~~l~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~ 145 (146)
.|-||+|-..+.+.+.... ++.....-++.+ .+.+. |=.-+++...+.+++|++.+
T Consensus 4 IH~HIlp~iDDGp~s~ees---l~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ln~~~ 66 (254)
T COG4464 4 IHSHILPDIDDGPKSLEES---LAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQLNEIL 66 (254)
T ss_pred ccccccCCCCCCCCcHHHH---HHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHHHHHHHH
Confidence 5899999774433333332 322222223332 34443 34457888888888888764
No 50
>PF01246 Ribosomal_L24e: Ribosomal protein L24e; InterPro: IPR000988 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeabacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families [] consists of mammalian ribosomal protein L24; yeast ribosomal protein L30A/B (Rp29) (YL21); Kluyveromyces lactis ribosomal protein L30; Arabidopsis thaliana ribosomal protein L24 homolog; Haloarcula marismortui ribosomal protein HL21/HL22; and Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ1201. These proteins have 60 to 160 amino-acid residues. This entry represents proteins related to the L24e ribosomal proteins.; PDB: 2ZKR_u 1VQ9_U 1VQL_U 1KD1_V 1VQP_U 3CCM_U 3CD6_U 3CCL_U 3CCR_U 1Q86_V ....
Probab=27.95 E-value=35 Score=22.00 Aligned_cols=29 Identities=21% Similarity=0.114 Sum_probs=16.5
Q ss_pred CCCccceecccccCCc---cEEEECCcEEEEE
Q 047991 1 MSIEYYQFGPHKIDAK---DVFYTTPLSFVMV 29 (146)
Q Consensus 1 ~~~~~~~f~~~~ip~~---~vv~e~d~~~af~ 29 (146)
|-...|.||.+.|+|+ ..|-.|-.++-|+
T Consensus 1 mk~~~C~Fsg~~I~PG~G~~~Vr~DG~v~~F~ 32 (71)
T PF01246_consen 1 MKTEKCSFSGYKIYPGHGKMYVRNDGKVFYFC 32 (71)
T ss_dssp SSSEE-TTT-SEE-SSSSEEEE-TTS-EEEES
T ss_pred CceEEecccCCccCCCCCeEEEecCCCeEEEe
Confidence 6778899999999875 3344455555554
No 51
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=24.25 E-value=3e+02 Score=23.02 Aligned_cols=15 Identities=27% Similarity=0.585 Sum_probs=12.4
Q ss_pred eEEEEEeccCCCCCC
Q 047991 86 HVHIHIVPRKESDFE 100 (146)
Q Consensus 86 H~HiHIIPR~~~d~~ 100 (146)
-+=.++.||+.||+.
T Consensus 274 ~ip~~~~~RR~GDpa 288 (329)
T COG1087 274 DIPVEIAPRRAGDPA 288 (329)
T ss_pred cCceeeCCCCCCCCc
Confidence 455889999999975
No 52
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=23.59 E-value=1.5e+02 Score=22.09 Aligned_cols=50 Identities=10% Similarity=0.268 Sum_probs=35.3
Q ss_pred cccCCC-CCCCHHHHHHHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccCeEEEEEec
Q 047991 34 REVKRF-ADLTADEICDLWLTARKVGRQLEVYHKASSLTLNIQDGPQAGQSVPHVHIHIVP 93 (146)
Q Consensus 34 ~H~~~~-~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~gq~v~H~HiHIIP 93 (146)
|+++++ ..++++.+..+-..+++.-+.+......+ .....|+++=++++|
T Consensus 120 R~~s~~T~~vs~~~~~ki~~~i~~fRk~i~~i~~~~----------~~~~~Vy~lN~qlFP 170 (171)
T PF14394_consen 120 RDFSGLTMSVSREDYEKIKKEIREFRKKIIAIAEED----------KEPDRVYQLNIQLFP 170 (171)
T ss_pred cceeeeEEEeCHHHHHHHHHHHHHHHHHHHHHHhcC----------CCCCeEEEEEEEEec
Confidence 777776 56788998888888888777776542221 134667788888887
No 53
>PF03039 IL12: Interleukin-12 alpha subunit; InterPro: IPR004281 Interleukin 12 (IL-12) is a disulphide-bonded heterodimer consisting of a 35kDa alpha subunit and a 40kDa beta subunit. It is involved in the stimulation and maintenance of Th1 cellular immune responses, including the normal host defence against various intracellular pathogens, such as Leishmania, Toxoplasma, Measles virus and Human immunodeficiency virus 1 (HIV). IL-12 also has an important role in pathological Th1 responses, such as in inflammatory bowel disease and multiple sclerosis. Suppression of IL-12 activity in such diseases may have therapeutic benefit. On the other hand, administration of recombinant IL-12 may have therapeutic benefit in conditions associated with pathological Th2 responses [, ].; GO: 0005143 interleukin-12 receptor binding, 0008083 growth factor activity, 0006955 immune response, 0005576 extracellular region; PDB: 3HMX_B 1F45_B.
Probab=22.68 E-value=1.5e+02 Score=23.27 Aligned_cols=44 Identities=25% Similarity=0.354 Sum_probs=30.9
Q ss_pred ChhhhhhhHHHHHHHHh---hcCCCCCCCCCCHHHHHHHHHHHHhhc
Q 047991 102 NDEIYDALDVKEKELKK---KLDLDEERKDRSPEERIQEANEYRSLF 145 (146)
Q Consensus 102 ~~~~~~~l~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (146)
-..+|++|..++..|++ ++-.+|.+..-=..-|....+.|.|.|
T Consensus 124 LssIyEDLk~Y~~efka~~~~ll~~p~~qi~Ld~~mL~aIdeLmQaL 170 (219)
T PF03039_consen 124 LSSIYEDLKMYQAEFKAINKKLLMDPERQISLDQNMLAAIDELMQAL 170 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSTT---SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHhhcCchhhhhhhHHHHHHHHHHHHHc
Confidence 45689999999999864 456777776445577888888887765
No 54
>PF13960 DUF4218: Domain of unknown function (DUF4218)
Probab=22.55 E-value=45 Score=23.96 Aligned_cols=67 Identities=19% Similarity=0.157 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccCeEEEEEeccCC-CCCCCChhhhhhhHHHHHHHHhhc
Q 047991 42 LTADEICDLWLTARKVGRQLEVYHKASSLTLNIQDGPQAGQSVPHVHIHIVPRKE-SDFENNDEIYDALDVKEKELKKKL 120 (146)
Q Consensus 42 L~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~gq~v~H~HiHIIPR~~-~d~~~~~~~~~~l~~~~~~l~~~~ 120 (146)
++.+++..|-.-+......++..+++.-|++. -|+.+|+...-. ..+.....+|- .+.+...|++.+
T Consensus 18 i~~~~l~~L~~~I~~~lc~lE~ifppsffdim-----------~HL~vHL~~~~~~~GPv~~~~myp-fER~m~~Lk~~v 85 (128)
T PF13960_consen 18 IDPDDLDELEEEIVETLCQLEMIFPPSFFDIM-----------VHLLVHLVDEIKLFGPVYYRWMYP-FERYMGILKKYV 85 (128)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHcchhHhhhh-----------HHHHHHHHHhhccccCccccceec-hHHHHHHHhhhh
Confidence 56788888888888888888988888776665 389999766432 22333333333 455555555544
No 55
>KOG2720 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=21.47 E-value=41 Score=28.52 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=19.1
Q ss_pred CCCceEEEEecCCCCCCccCeEEEEEe
Q 047991 66 KASSLTLNIQDGPQAGQSVPHVHIHIV 92 (146)
Q Consensus 66 ~~~~~ni~~n~g~~~gq~v~H~HiHII 92 (146)
+.+-|.++.|.- -+..+|.|+|+|..
T Consensus 212 dd~~frlgyNSl-ga~AsVNHLHfha~ 237 (431)
T KOG2720|consen 212 DDPYFRLGYNSL-GAFASVNHLHFHAY 237 (431)
T ss_pred CCchhheecccc-hhhhhhhhhhhhhh
Confidence 566788888763 24468899999965
No 56
>PF05373 Pro_3_hydrox_C: L-proline 3-hydroxylase, C-terminal; InterPro: IPR008035 Iron (II)/2-oxoglutarate (2-OG)-dependent oxygenases catalyse oxidative reactions in a range of metabolic processes. Proline 3-hydroxylase hydroxylates proline at position 3, the first of a 2-OG oxygenase catalysing oxidation of a free alpha-amino acid. The structure contains conserved motifs present in other 2-OG oxygenases including a jelly roll strand core and residues binding iron and 2-oxoglutarate, consistent with divergent evolution within the extended family. The structure differs significantly from many other 2-OG oxygenases in possessing a discrete C-terminal helical domain.; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 1E5S_A 1E5R_B.
Probab=21.43 E-value=1e+02 Score=21.24 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=23.8
Q ss_pred ChhhhhhhHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHhhc
Q 047991 102 NDEIYDALDVKEKELKKKLDLDEERKDRSPEERIQEANEYRSLF 145 (146)
Q Consensus 102 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (146)
....|++|.+.. .+...+.|.+.|+++|+++
T Consensus 63 ~~~~yDWL~eia-------------~rsGD~alv~kA~~lrry~ 93 (101)
T PF05373_consen 63 PAEAYDWLIEIA-------------RRSGDPALVEKAERLRRYF 93 (101)
T ss_dssp TTHHHHHHHHHH-------------HHCT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHHHH
Confidence 456899998776 3467888999999999886
No 57
>smart00309 PAH Pancreatic hormones / neuropeptide F / peptide YY family. Pancreatic hormone is a regulator of pancreatic and gastrointestinal functions.
Probab=21.03 E-value=1.7e+02 Score=16.33 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=14.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhc
Q 047991 125 ERKDRSPEERIQEANEYRSLF 145 (146)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~ 145 (146)
.+...++|+|+.=-+.|++.+
T Consensus 8 Pg~~a~~e~l~~Y~~~L~~Yi 28 (36)
T smart00309 8 PGDDASPEDLRQYLAALREYI 28 (36)
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 345568888887777777653
No 58
>PF08902 DUF1848: Domain of unknown function (DUF1848); InterPro: IPR014998 This group of proteins are functionally uncharacterised. The C terminus contains a cluster of cysteines that are similar to the iron-sulphur cluster found at the N terminus of IPR007197 from INTERPRO.
Probab=20.87 E-value=1.2e+02 Score=24.44 Aligned_cols=40 Identities=13% Similarity=0.231 Sum_probs=28.2
Q ss_pred CCcEEEEEeCCC---cccC----CCCCCCHHHHHHHHHHHHHHHHHh
Q 047991 22 TPLSFVMVNLRP---REVK----RFADLTADEICDLWLTARKVGRQL 61 (146)
Q Consensus 22 ~d~~~af~di~P---~H~~----~~~dL~~ee~~~l~~~~~~v~~~l 61 (146)
+.-++.|+|.++ +... .+.++++++..+|+.-+..+++..
T Consensus 148 ~~~viSF~D~Y~k~~~~l~~~~~~~~~~~~~~~~~l~~~l~~ia~~~ 194 (266)
T PF08902_consen 148 DRCVISFLDLYRKVRRNLARLGFRIREPSEEEKRELAKRLAEIAKKY 194 (266)
T ss_pred CEEEEEeeeccHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 445567778777 3333 344888999999888888887664
No 59
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=20.56 E-value=2e+02 Score=23.35 Aligned_cols=105 Identities=21% Similarity=0.183 Sum_probs=55.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhhhhcCCCc--eEEEEecCCC-CC---------CccCeEEEEEeccCCCC------
Q 047991 37 KRFADLTADEICDLWLTARKVGRQLEVYHKASS--LTLNIQDGPQ-AG---------QSVPHVHIHIVPRKESD------ 98 (146)
Q Consensus 37 ~~~~dL~~ee~~~l~~~~~~v~~~l~~~~~~~~--~ni~~n~g~~-~g---------q~v~H~HiHIIPR~~~d------ 98 (146)
..++=.+..|..++.. ++.+.+.+++.-.-.+ +.=++.|.+. .+ ..+.-=-+|++||.+--
T Consensus 144 deiyIVtSge~MalYA-ANNI~kgi~k~a~~~~~rLgGiIcNsr~~~~e~e~v~~fa~~igt~li~~vPr~~ivq~aE~~ 222 (278)
T COG1348 144 DEIYIVTSGEMMALYA-ANNIAKGIRKYAKTGGVRLGGIICNSRSVDRERELVEAFAERLGTQLIHFVPRDNIVQKAELN 222 (278)
T ss_pred cEEEEEecCchHHHHH-HHHHHHHHHHHhhcCCcceeeEEecCCCcccHHHHHHHHHHHhCCceEeeccchHHHHHHHHc
Confidence 3355566667777654 4556776666543233 3323333322 11 12233348899997421
Q ss_pred --CCCChhhhhhhHHHHHHHHhhcCCCCC---CCCCCHHHHHHHHHHHH
Q 047991 99 --FENNDEIYDALDVKEKELKKKLDLDEE---RKDRSPEERIQEANEYR 142 (146)
Q Consensus 99 --~~~~~~~~~~l~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~ 142 (146)
+.-.-..-...++.+++|.+++...+. -++.+.|||.+...++.
T Consensus 223 ~kTvie~~P~s~~a~~yr~LA~~I~~n~~~vvp~pl~~eele~~~~~~~ 271 (278)
T COG1348 223 GKTVIEYAPDSNQAEEYRELAKKILENEKGVVPTPLSDEELEELLLEFG 271 (278)
T ss_pred CcchhhhCcchhHHHHHHHHHHHHHhCCCCccCCCCCHHHHHHHHHHhc
Confidence 110000011255678888887744333 36678888888776654
No 60
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=20.51 E-value=77 Score=18.57 Aligned_cols=18 Identities=33% Similarity=0.362 Sum_probs=14.3
Q ss_pred CCHHHHHHHHHHHHhhcC
Q 047991 129 RSPEERIQEANEYRSLFL 146 (146)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~ 146 (146)
.+.+++.+.++.||+.|+
T Consensus 25 ~~~eeIe~kv~~~R~~L~ 42 (46)
T PF08312_consen 25 YSEEEIEEKVDELRKKLL 42 (46)
T ss_dssp --HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 489999999999998763
No 61
>PF15150 PMAIP1: Phorbol-12-myristate-13-acetate-induced; PDB: 2ROD_B 2JM6_A 2NLA_B 3MQP_B.
Probab=20.44 E-value=58 Score=19.62 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=8.2
Q ss_pred CCCCHHHHHHHHH-HHH
Q 047991 127 KDRSPEERIQEAN-EYR 142 (146)
Q Consensus 127 ~~~~~~~~~~~~~-~~~ 142 (146)
+.|+|++.+.||. +||
T Consensus 14 Ptr~p~~~~vEca~QlR 30 (54)
T PF15150_consen 14 PTRAPAELEVECAIQLR 30 (54)
T ss_dssp -----TTHHHHHHHHHH
T ss_pred CCCCCCccchHHHHHHH
Confidence 4457888888887 454
Done!