BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047992
(868 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 396 SWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRM 455
+W ++ Y + G +A E + K E D P N W L + Y + G+ DEA++ +Q+
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 456 GKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRK 490
+ D N +W +L Y + G + A+ ++K
Sbjct: 70 LELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQK 102
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 396 SWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRM 455
+W ++ Y + G +A E + K E P N W L + Y + G+ DEA++ +Q+
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL-YPNNAEAWYNLGNAYYKQGDYDEAIEYYQK- 68
Query: 456 GKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPN 499
+ N +W +L Y + G + A+ ++K YPN
Sbjct: 69 -ALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LYPN 109
>pdb|1UWQ|A Chain A, Structure Of Beta-glycosidase From Sulfolobus Solfataricus
pdb|1UWQ|B Chain B, Structure Of Beta-glycosidase From Sulfolobus Solfataricus
pdb|1UWR|A Chain A, Structure Of Beta-Glycosidase From Sulfolobus Solfataricus
In Complex With 2-Deoxy-2-Fluoro-Galactose
pdb|1UWR|B Chain B, Structure Of Beta-Glycosidase From Sulfolobus Solfataricus
In Complex With 2-Deoxy-2-Fluoro-Galactose
pdb|1UWS|A Chain A, Structure Of Beta-Glycosidase From Sulfolobus Solfataricus
In Complex With 2-Deoxy-2-Fluoro-Glucose
pdb|1UWS|B Chain B, Structure Of Beta-Glycosidase From Sulfolobus Solfataricus
In Complex With 2-Deoxy-2-Fluoro-Glucose
pdb|1UWT|A Chain A, Structure Of Beta-Glycosidase From Sulfolobus Solfataricus
In Complex With D-Galactohydroximo-1,5-Lactam
pdb|1UWT|B Chain B, Structure Of Beta-Glycosidase From Sulfolobus Solfataricus
In Complex With D-Galactohydroximo-1,5-Lactam
pdb|1UWU|A Chain A, Structure Of Beta-Glycosidase From Sulfolobus Solfataricus
In Complex With D-Glucohydroximo-1,5-Lactam
pdb|1UWU|B Chain B, Structure Of Beta-Glycosidase From Sulfolobus Solfataricus
In Complex With D-Glucohydroximo-1,5-Lactam
pdb|2CEQ|A Chain A, Beta-Glycosidase From Sulfolobus Solfataricus In Complex
With Glucoimidazole
pdb|2CEQ|B Chain B, Beta-Glycosidase From Sulfolobus Solfataricus In Complex
With Glucoimidazole
pdb|2CER|A Chain A, Beta-Glycosidase From Sulfolobus Solfataricus In Complex
With Phenethyl-Substituted Glucoimidazole
pdb|2CER|B Chain B, Beta-Glycosidase From Sulfolobus Solfataricus In Complex
With Phenethyl-Substituted Glucoimidazole
Length = 489
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 92/257 (35%), Gaps = 44/257 (17%)
Query: 34 GNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFLNLVTEIDVFV 93
G G T D+ G K+ R +N+ + I N + + VTE+++
Sbjct: 56 GPGYWGNYKTFHDNAQKMGLKIAR---LNVEWSRIFPNPLPRPQNFDESKQDVTEVEINE 112
Query: 94 -KTKLLSVYAKCGCLDDAREVFEDMRER------NLYTWSAMI----------GAYSRDQ 136
+ K L YA L+ RE+F+D++ R N+Y W + G ++
Sbjct: 113 NELKRLDEYANKDALNHYREIFKDLKSRGLYFILNMYHWPLPLWLHDPIRVRRGDFTGPS 172
Query: 137 RW---REVVELFFLMVQDGLFPDDFLFPKILQACGNC----------GDFEAGKLMHSLV 183
W R V E DD + N F G L L
Sbjct: 173 GWLSTRTVYEFARFSAYIAWKFDDLVDEYSTMNEPNVVGGLGYVGVKSGFPPGYLSFELS 232
Query: 184 IKLGMSCVR---RVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGEND 240
+ + ++ R + + +V K +I+A F+ + +KD A ++ END
Sbjct: 233 RRAMYNIIQAHARAYDGIKSVSKKPVGIIYANSSFQPLTDKDMEA--------VEMAEND 284
Query: 241 EAHRLFDKMCREEIKLG 257
FD + R EI G
Sbjct: 285 NRWWFFDAIIRGEITRG 301
>pdb|4EAM|A Chain A, 1.70a Resolution Structure Of Apo Beta-Glycosidase (W33g)
From Sulfolobus Solfataricus
pdb|4EAM|B Chain B, 1.70a Resolution Structure Of Apo Beta-Glycosidase (W33g)
From Sulfolobus Solfataricus
pdb|4EAN|A Chain A, 1.75a Resolution Structure Of Indole Bound
Beta-Glycosidase (W33g) From Sulfolobus Solfataricus
pdb|4EAN|B Chain B, 1.75a Resolution Structure Of Indole Bound
Beta-Glycosidase (W33g) From Sulfolobus Solfataricus
Length = 489
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 92/257 (35%), Gaps = 44/257 (17%)
Query: 34 GNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFLNLVTEIDVFV 93
G G T D+ G K+ R +N+ + I N + + VTE+++
Sbjct: 56 GPGYWGNYKTFHDNAQKMGLKIAR---LNVEWSRIFPNPLPRPQNFDESKQDVTEVEINE 112
Query: 94 -KTKLLSVYAKCGCLDDAREVFEDMRER------NLYTWSAMI----------GAYSRDQ 136
+ K L YA L+ RE+F+D++ R N+Y W + G ++
Sbjct: 113 NELKRLDEYANKDALNHYREIFKDLKSRGLYFILNMYHWPLPLWLHDPIRVRRGDFTGPS 172
Query: 137 RW---REVVELFFLMVQDGLFPDDFLFPKILQACGNC----------GDFEAGKLMHSLV 183
W R V E DD + N F G L L
Sbjct: 173 GWLSTRTVYEFARFSAYIAWKFDDLVDEYSTMNEPNVVGGLGYVGVKSGFPPGYLSFELS 232
Query: 184 IKLGMSCVR---RVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGEND 240
+ + ++ R + + +V K +I+A F+ + +KD A ++ END
Sbjct: 233 RRAMYNIIQAHARAYDGIKSVSKKPVGIIYANSSFQPLTDKDMEA--------VEMAEND 284
Query: 241 EAHRLFDKMCREEIKLG 257
FD + R EI G
Sbjct: 285 NRWWFFDAIIRGEITRG 301
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 78/222 (35%), Gaps = 71/222 (31%)
Query: 241 EAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMI 300
EA RL+D+ R ++L +N+L L C +A + + G+
Sbjct: 44 EALRLYDEARRNGVQLSQYHYNVL------LYVCSLAEAATESSPNPGL----------- 86
Query: 301 SGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFT 360
S+ D+FK+M V+PN T T+ LAV
Sbjct: 87 ---------SRGFDIFKQMIVDKVVPNEATFTNGAR----------------LAVA---K 118
Query: 361 DDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVY-------SWNSMIAGYCQAGYCGKA 413
DD E FDM+K + S+ + G+C+ G KA
Sbjct: 119 DD-------------------PEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA 159
Query: 414 YELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRM 455
YE+ M ES+V P L+ + N D+ QR+
Sbjct: 160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRL 201
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 33.9 bits (76), Expect = 0.38, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 396 SWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQR 454
+W ++ Y + G +A E + K E D P N W L + Y + G+ DEA++ +Q+
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
>pdb|1GOW|A Chain A, Beta-Glycosidase From Sulfolobus Solfataricus
pdb|1GOW|B Chain B, Beta-Glycosidase From Sulfolobus Solfataricus
Length = 489
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 90/257 (35%), Gaps = 44/257 (17%)
Query: 34 GNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFLNLVTEIDVFV 93
G G T D+ G K+ R +N + N + + VTE+++
Sbjct: 56 GPGYWGNYKTFHDNAQKMGLKIAR---LNSEWSRQFPNPLPRPQNFDESKQDVTEVEINE 112
Query: 94 -KTKLLSVYAKCGCLDDAREVFEDMRER------NLYTWSAMI----------GAYSRDQ 136
+ K L YA L+ RE+F+D++ R N+Y W + G ++
Sbjct: 113 NELKRLDEYANKDALNHYREIFKDLKSRGLYFIQNMYHWPLPLWLHDPIRVRRGDFTGPS 172
Query: 137 RW---REVVELFFLMVQDGLFPDDFLFPKILQACGNC----------GDFEAGKLMHSLV 183
W R V E DD + N F G L L
Sbjct: 173 GWLSTRTVYEFARFSAYTAWKFDDLVDEYSTMNEPNVVGGLGYVGVKSGFPPGYLSFELS 232
Query: 184 IKLGMSCVR---RVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGEND 240
+ + ++ R + + +V K +I+A F+ + +KD A ++ END
Sbjct: 233 RRAMYNIIQAHARAYDGIKSVSKKPVGIIYANSSFQPLTDKDMEA--------VEMAEND 284
Query: 241 EAHRLFDKMCREEIKLG 257
FD + R EI G
Sbjct: 285 NRWWFFDAIIRGEITRG 301
>pdb|1UWI|A Chain A, Crystal Structure Of Mutated Beta-Glycosidase From
Sulfolobus Solfataricus, Working At Moderate Temperature
pdb|1UWI|B Chain B, Crystal Structure Of Mutated Beta-Glycosidase From
Sulfolobus Solfataricus, Working At Moderate Temperature
pdb|1UWI|C Chain C, Crystal Structure Of Mutated Beta-Glycosidase From
Sulfolobus Solfataricus, Working At Moderate Temperature
pdb|1UWI|D Chain D, Crystal Structure Of Mutated Beta-Glycosidase From
Sulfolobus Solfataricus, Working At Moderate Temperature
Length = 489
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 75/205 (36%), Gaps = 41/205 (20%)
Query: 86 VTEIDVFV-KTKLLSVYAKCGCLDDAREVFEDMRER------NLYTWSAMI--------- 129
VTE+++ + K L YA L+ RE+F+D++ R N+Y W +
Sbjct: 105 VTEVEINENELKRLDEYANKDALNHYREIFKDLKSRGLYFIQNMYHWPLPLWLHDPIRVR 164
Query: 130 -GAYSRDQRW---REVVELFFLMVQDGLFPDDFLFPKILQACGNC----------GDFEA 175
G ++ W R V E DD + N F
Sbjct: 165 RGDFTGPSGWLSTRTVYEFARFSAYTAWKFDDLVDEYSTMNEPNVVGGLGYVGVKSGFPP 224
Query: 176 GKLMHSLVIKLGMSCVR---RVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISG 232
G L L + + ++ R + + +V K +I+A F+ + +KD A
Sbjct: 225 GYLSFELSRRAMYNIIQAHARAYDGIKSVSKKPVGIIYANSSFQPLTDKDMEA------- 277
Query: 233 YFQIGENDEAHRLFDKMCREEIKLG 257
++ END FD + R EI G
Sbjct: 278 -VEMAENDNRWWFFDAIIRGEITRG 301
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 202 YVKCGKLIWARRFFE---SMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGV 258
Y K G A +++ +D + AW ++ + Y++ G+ DEA + K + +
Sbjct: 11 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 70
Query: 259 VTFNILIRSYNQLGQCDVAMEMVKRMESLGITP-DVFTWTCMISGFAQNGRTSQALDLFK 317
+N L +Y + G D A+E ++ +L + P W + + + + G +A++ ++
Sbjct: 71 AWYN-LGNAYYKQGDYDEAIEYYQK--ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127
Query: 318 E 318
+
Sbjct: 128 K 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,269,316
Number of Sequences: 62578
Number of extensions: 1026803
Number of successful extensions: 2905
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2879
Number of HSP's gapped (non-prelim): 30
length of query: 868
length of database: 14,973,337
effective HSP length: 107
effective length of query: 761
effective length of database: 8,277,491
effective search space: 6299170651
effective search space used: 6299170651
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)