Query 047992
Match_columns 868
No_of_seqs 889 out of 5539
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 05:13:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047992.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047992hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 8E-159 2E-163 1425.3 88.4 802 19-866 48-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 7E-133 1E-137 1172.0 68.3 606 119-868 84-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 6.2E-77 1.4E-81 715.6 62.5 690 8-759 136-855 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.4E-67 3.1E-72 619.6 55.5 533 87-670 366-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 1.5E-67 3.2E-72 619.2 51.3 503 24-601 89-610 (697)
6 PLN03218 maturation of RBCL 1; 100.0 2.1E-64 4.6E-69 592.8 56.1 532 54-602 367-916 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.9E-37 6.3E-42 380.6 76.0 692 24-733 161-867 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 9.4E-37 2E-41 376.0 74.1 692 21-730 192-898 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 1.9E-42 4.2E-47 297.6 8.2 106 739-858 2-116 (116)
10 PRK11447 cellulose synthase su 100.0 1.9E-24 4.2E-29 266.8 62.4 627 67-734 38-743 (1157)
11 PRK11447 cellulose synthase su 100.0 1.7E-22 3.6E-27 249.6 67.0 638 25-704 31-749 (1157)
12 PRK09782 bacteriophage N4 rece 99.9 2E-21 4.3E-26 228.6 59.7 646 33-728 55-736 (987)
13 PRK09782 bacteriophage N4 rece 99.9 3.2E-21 6.9E-26 226.9 57.8 597 102-730 55-704 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 1.9E-19 4.2E-24 186.8 32.6 443 196-721 52-508 (966)
15 KOG2002 TPR-containing nuclear 99.8 5.6E-15 1.2E-19 162.6 52.3 557 138-711 146-758 (1018)
16 KOG2002 TPR-containing nuclear 99.8 3.4E-15 7.3E-20 164.3 50.6 684 24-733 43-799 (1018)
17 PRK11788 tetratricopeptide rep 99.8 1.1E-18 2.4E-23 192.5 24.0 310 269-621 46-367 (389)
18 KOG4626 O-linked N-acetylgluco 99.8 9.3E-18 2E-22 174.5 28.9 418 297-729 52-482 (966)
19 TIGR00990 3a0801s09 mitochondr 99.8 6.5E-17 1.4E-21 187.9 39.5 422 226-730 130-569 (615)
20 PRK11788 tetratricopeptide rep 99.8 2E-17 4.4E-22 182.4 27.0 298 400-739 41-354 (389)
21 PRK10049 pgaA outer membrane p 99.8 4.5E-16 9.7E-21 184.1 39.3 358 366-732 52-456 (765)
22 KOG4422 Uncharacterized conser 99.8 5.5E-14 1.2E-18 140.7 40.7 474 3-595 83-590 (625)
23 PRK10049 pgaA outer membrane p 99.8 2.1E-15 4.5E-20 178.5 36.6 409 257-707 14-465 (765)
24 PRK15174 Vi polysaccharide exp 99.7 2.4E-15 5.1E-20 174.1 34.4 326 368-703 47-386 (656)
25 PRK14574 hmsH outer membrane p 99.7 2.6E-14 5.6E-19 165.5 42.6 369 339-732 113-513 (822)
26 KOG0495 HAT repeat protein [RN 99.7 4.3E-12 9.3E-17 133.8 52.9 613 104-749 264-895 (913)
27 TIGR00990 3a0801s09 mitochondr 99.7 1.5E-14 3.1E-19 168.3 39.0 447 197-731 132-596 (615)
28 PRK15174 Vi polysaccharide exp 99.7 2.4E-15 5.2E-20 174.0 31.9 353 328-702 42-407 (656)
29 PRK14574 hmsH outer membrane p 99.7 4.7E-13 1E-17 155.1 43.7 214 473-706 300-521 (822)
30 KOG0495 HAT repeat protein [RN 99.7 8.2E-11 1.8E-15 124.4 53.5 608 71-711 265-893 (913)
31 KOG4318 Bicoid mRNA stability 99.7 2.8E-12 6.1E-17 139.8 43.3 647 43-733 11-809 (1088)
32 KOG4422 Uncharacterized conser 99.7 1.6E-12 3.5E-17 130.4 36.1 330 122-530 116-463 (625)
33 KOG2076 RNA polymerase III tra 99.7 6.1E-11 1.3E-15 130.5 51.5 358 30-421 147-553 (895)
34 KOG2076 RNA polymerase III tra 99.6 1.3E-10 2.8E-15 128.0 42.3 183 105-321 153-344 (895)
35 KOG2003 TPR repeat-containing 99.6 1E-11 2.2E-16 125.2 30.2 171 544-719 533-710 (840)
36 KOG4318 Bicoid mRNA stability 99.5 4.3E-11 9.4E-16 130.7 36.2 604 79-730 12-734 (1088)
37 PF13429 TPR_15: Tetratricopep 99.5 8.6E-14 1.9E-18 145.2 10.4 256 434-729 13-274 (280)
38 KOG1155 Anaphase-promoting com 99.4 1.2E-09 2.7E-14 111.5 35.4 356 255-662 161-532 (559)
39 KOG0547 Translocase of outer m 99.4 5.7E-10 1.2E-14 114.5 31.4 208 514-728 340-562 (606)
40 KOG1915 Cell cycle control pro 99.4 3.6E-09 7.8E-14 108.1 36.8 488 205-731 86-624 (677)
41 PRK10747 putative protoheme IX 99.4 6E-11 1.3E-15 129.6 25.5 286 376-699 97-391 (398)
42 KOG1915 Cell cycle control pro 99.4 1.7E-08 3.7E-13 103.3 39.8 423 34-493 85-535 (677)
43 KOG2003 TPR repeat-containing 99.4 1E-10 2.3E-15 118.0 23.1 452 167-651 211-708 (840)
44 TIGR00540 hemY_coli hemY prote 99.4 2.3E-10 4.9E-15 125.8 28.0 194 375-602 96-297 (409)
45 KOG2047 mRNA splicing factor [ 99.4 8.1E-08 1.8E-12 102.1 44.5 174 91-270 102-293 (835)
46 PRK10747 putative protoheme IX 99.3 2.8E-10 6.1E-15 124.3 25.5 279 205-491 97-387 (398)
47 KOG1126 DNA-binding cell divis 99.3 8.2E-11 1.8E-15 125.8 19.9 273 444-729 334-617 (638)
48 KOG0985 Vesicle coat protein c 99.3 7.3E-08 1.6E-12 106.9 42.0 543 94-727 609-1244(1666)
49 KOG1173 Anaphase-promoting com 99.3 5.3E-09 1.2E-13 109.7 30.3 195 531-728 308-514 (611)
50 KOG1155 Anaphase-promoting com 99.3 4.7E-09 1E-13 107.3 28.3 189 534-727 329-531 (559)
51 TIGR02521 type_IV_pilW type IV 99.3 4E-10 8.6E-15 114.3 21.1 196 534-731 30-231 (234)
52 TIGR00540 hemY_coli hemY prote 99.3 1.5E-09 3.2E-14 119.4 26.9 283 405-729 95-396 (409)
53 KOG1126 DNA-binding cell divis 99.3 3.4E-10 7.3E-15 121.2 20.7 243 481-731 335-585 (638)
54 PF13429 TPR_15: Tetratricopep 99.3 1.2E-11 2.5E-16 129.1 9.5 255 399-697 13-276 (280)
55 KOG4162 Predicted calmodulin-b 99.2 1.3E-07 2.8E-12 103.2 37.5 427 251-731 316-782 (799)
56 KOG2047 mRNA splicing factor [ 99.2 8E-07 1.7E-11 94.8 41.8 537 7-594 123-718 (835)
57 KOG1173 Anaphase-promoting com 99.2 8.9E-08 1.9E-12 100.8 31.4 284 292-611 243-532 (611)
58 PF13041 PPR_2: PPR repeat fam 99.2 5.8E-11 1.3E-15 86.5 5.8 50 564-613 1-50 (50)
59 PRK12370 invasion protein regu 99.2 1.7E-09 3.8E-14 123.5 20.9 204 516-727 320-531 (553)
60 PF13041 PPR_2: PPR repeat fam 99.1 6.1E-11 1.3E-15 86.4 5.4 50 120-169 1-50 (50)
61 KOG3785 Uncharacterized conser 99.1 1.1E-07 2.4E-12 93.9 29.1 215 380-640 271-497 (557)
62 KOG3616 Selective LIM binding 99.1 2E-05 4.3E-10 85.2 47.4 530 134-722 744-1381(1636)
63 KOG3616 Selective LIM binding 99.1 3.1E-06 6.6E-11 91.2 40.1 433 197-727 562-1019(1636)
64 KOG0547 Translocase of outer m 99.1 9.2E-08 2E-12 98.7 27.8 80 129-212 122-203 (606)
65 COG2956 Predicted N-acetylgluc 99.1 1.7E-07 3.7E-12 91.9 26.5 292 23-321 37-346 (389)
66 COG3071 HemY Uncharacterized e 99.0 9.1E-08 2E-12 96.9 24.7 285 376-729 97-387 (400)
67 COG3071 HemY Uncharacterized e 99.0 7.9E-08 1.7E-12 97.3 24.3 286 307-600 98-395 (400)
68 KOG0985 Vesicle coat protein c 99.0 4.2E-05 9E-10 85.8 46.4 560 129-732 488-1162(1666)
69 KOG1174 Anaphase-promoting com 99.0 2E-06 4.4E-11 87.1 33.3 273 358-705 227-507 (564)
70 COG2956 Predicted N-acetylgluc 99.0 1E-07 2.2E-12 93.5 23.2 308 407-756 48-371 (389)
71 KOG1127 TPR repeat-containing 99.0 3.9E-06 8.4E-11 94.0 37.6 550 92-713 493-1082(1238)
72 KOG2376 Signal recognition par 99.0 6.6E-06 1.4E-10 87.4 37.4 180 538-725 312-513 (652)
73 PRK11189 lipoprotein NlpI; Pro 99.0 2.3E-08 5E-13 104.5 19.6 190 535-733 64-266 (296)
74 KOG1129 TPR repeat-containing 99.0 1.1E-08 2.5E-13 99.7 15.7 227 433-732 227-458 (478)
75 PRK12370 invasion protein regu 99.0 3.4E-08 7.3E-13 113.0 21.6 176 548-730 317-500 (553)
76 KOG1156 N-terminal acetyltrans 99.0 5.1E-06 1.1E-10 89.3 35.5 465 169-695 19-508 (700)
77 KOG1840 Kinesin light chain [C 99.0 5.2E-08 1.1E-12 105.9 21.0 230 500-729 199-476 (508)
78 TIGR02521 type_IV_pilW type IV 99.0 5.4E-08 1.2E-12 98.5 20.2 164 535-700 65-234 (234)
79 PRK11189 lipoprotein NlpI; Pro 98.9 1.9E-07 4.1E-12 97.6 22.5 174 534-714 97-282 (296)
80 KOG1840 Kinesin light chain [C 98.9 2.3E-07 4.9E-12 101.1 22.8 240 430-697 200-478 (508)
81 COG3063 PilF Tfp pilus assembl 98.9 9.2E-08 2E-12 89.7 16.7 159 571-734 40-204 (250)
82 KOG4162 Predicted calmodulin-b 98.9 2.8E-05 6E-10 85.5 37.4 65 640-704 721-789 (799)
83 KOG3785 Uncharacterized conser 98.9 2E-05 4.4E-10 78.3 32.3 128 571-701 364-493 (557)
84 PF12569 NARP1: NMDA receptor- 98.9 9.9E-06 2.2E-10 89.6 33.9 430 231-725 12-513 (517)
85 KOG2376 Signal recognition par 98.8 9E-05 1.9E-09 79.1 38.7 107 134-250 91-202 (652)
86 KOG1127 TPR repeat-containing 98.8 9.9E-05 2.1E-09 83.2 40.8 646 24-715 494-1192(1238)
87 KOG3617 WD40 and TPR repeat-co 98.7 0.0002 4.4E-09 78.8 36.8 552 90-731 725-1358(1416)
88 KOG1156 N-terminal acetyltrans 98.7 5.4E-05 1.2E-09 81.6 32.1 244 225-511 10-263 (700)
89 KOG1174 Anaphase-promoting com 98.7 8.7E-05 1.9E-09 75.6 30.4 290 433-730 198-498 (564)
90 KOG0624 dsRNA-activated protei 98.7 1E-05 2.2E-10 80.1 23.0 306 369-705 44-377 (504)
91 PF04733 Coatomer_E: Coatomer 98.6 8E-07 1.7E-11 91.5 16.0 159 536-731 103-264 (290)
92 KOG1129 TPR repeat-containing 98.6 5.6E-07 1.2E-11 88.2 13.7 123 367-493 227-352 (478)
93 KOG0548 Molecular co-chaperone 98.6 6.9E-05 1.5E-09 79.3 29.2 175 541-724 304-481 (539)
94 COG3063 PilF Tfp pilus assembl 98.6 1.9E-05 4.1E-10 74.5 21.6 192 510-705 45-243 (250)
95 KOG1125 TPR repeat-containing 98.6 5.5E-07 1.2E-11 95.4 12.3 224 439-726 295-521 (579)
96 PRK15359 type III secretion sy 98.5 1.7E-06 3.7E-11 79.5 13.7 123 586-714 13-137 (144)
97 PRK04841 transcriptional regul 98.5 0.0013 2.8E-08 81.4 43.5 362 370-731 348-759 (903)
98 KOG4340 Uncharacterized conser 98.5 3.7E-05 8E-10 74.7 22.8 403 261-728 13-439 (459)
99 KOG3617 WD40 and TPR repeat-co 98.5 0.00071 1.5E-08 74.7 35.0 396 31-491 737-1171(1416)
100 PRK04841 transcriptional regul 98.5 0.0046 9.9E-08 76.5 47.1 233 367-629 495-759 (903)
101 cd05804 StaR_like StaR_like; a 98.5 5.1E-05 1.1E-09 82.5 26.5 195 538-732 117-336 (355)
102 TIGR03302 OM_YfiO outer membra 98.5 6.8E-06 1.5E-10 83.3 17.9 180 534-732 32-232 (235)
103 PF12569 NARP1: NMDA receptor- 98.5 3.9E-05 8.5E-10 85.0 24.7 295 370-697 11-333 (517)
104 KOG4340 Uncharacterized conser 98.4 0.00017 3.7E-09 70.3 24.4 350 125-491 13-372 (459)
105 PF04733 Coatomer_E: Coatomer 98.4 2.2E-06 4.8E-11 88.2 12.5 159 437-638 110-273 (290)
106 KOG1125 TPR repeat-containing 98.4 9E-06 1.9E-10 86.5 16.3 150 517-692 411-565 (579)
107 PF12854 PPR_1: PPR repeat 98.4 3.9E-07 8.4E-12 59.4 3.9 32 253-284 2-33 (34)
108 KOG0548 Molecular co-chaperone 98.4 6.6E-05 1.4E-09 79.4 21.8 213 505-732 229-455 (539)
109 PF12854 PPR_1: PPR repeat 98.4 3.6E-07 7.9E-12 59.6 3.2 34 287-320 1-34 (34)
110 PRK10370 formate-dependent nit 98.4 1.3E-05 2.9E-10 77.8 15.4 95 637-731 73-172 (198)
111 TIGR03302 OM_YfiO outer membra 98.3 1.7E-05 3.8E-10 80.3 16.3 181 499-700 32-234 (235)
112 PLN02789 farnesyltranstransfer 98.3 7.6E-05 1.6E-09 78.0 20.9 196 515-716 52-268 (320)
113 cd05804 StaR_like StaR_like; a 98.3 0.00029 6.2E-09 76.5 26.0 218 513-733 56-294 (355)
114 KOG1914 mRNA cleavage and poly 98.3 0.003 6.6E-08 67.1 31.3 79 222-304 19-97 (656)
115 KOG1128 Uncharacterized conser 98.3 1.4E-05 3E-10 87.3 14.2 213 433-699 402-617 (777)
116 COG5010 TadD Flp pilus assembl 98.2 4.9E-05 1.1E-09 73.4 15.9 135 597-733 62-198 (257)
117 PRK15359 type III secretion sy 98.2 8.8E-06 1.9E-10 74.7 10.4 97 633-731 22-120 (144)
118 PRK10370 formate-dependent nit 98.2 8.1E-05 1.7E-09 72.4 17.3 155 542-709 23-184 (198)
119 KOG1128 Uncharacterized conser 98.2 9E-05 2E-09 81.1 18.3 234 359-644 394-630 (777)
120 KOG1070 rRNA processing protei 98.2 0.00017 3.7E-09 84.2 21.2 231 462-697 1455-1699(1710)
121 PRK15363 pathogenicity island 98.2 1.4E-05 3E-10 71.9 9.7 95 636-730 34-130 (157)
122 PRK14720 transcript cleavage f 98.1 0.00026 5.6E-09 82.3 21.6 65 671-737 225-289 (906)
123 TIGR00756 PPR pentatricopeptid 98.1 4.4E-06 9.4E-11 55.5 4.4 34 567-600 1-34 (35)
124 KOG1914 mRNA cleavage and poly 98.1 0.016 3.5E-07 61.8 32.3 148 309-457 347-500 (656)
125 KOG1070 rRNA processing protei 98.1 0.00014 2.9E-09 84.9 18.5 200 532-735 1455-1666(1710)
126 PRK15179 Vi polysaccharide bio 98.1 0.00017 3.7E-09 83.1 19.6 138 564-706 84-225 (694)
127 COG4783 Putative Zn-dependent 98.1 0.00082 1.8E-08 70.8 22.3 122 606-729 311-434 (484)
128 PRK15179 Vi polysaccharide bio 98.1 0.00022 4.8E-09 82.2 19.9 130 597-729 82-214 (694)
129 TIGR02552 LcrH_SycD type III s 98.0 3.7E-05 8.1E-10 70.1 10.2 94 638-731 18-113 (135)
130 PLN02789 farnesyltranstransfer 98.0 0.0004 8.7E-09 72.6 18.3 182 540-726 42-244 (320)
131 COG5010 TadD Flp pilus assembl 98.0 0.00061 1.3E-08 66.1 17.5 180 534-719 66-251 (257)
132 TIGR00756 PPR pentatricopeptid 98.0 1.2E-05 2.7E-10 53.2 4.4 35 123-157 1-35 (35)
133 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00021 4.5E-09 76.2 15.7 121 605-730 173-295 (395)
134 KOG0624 dsRNA-activated protei 98.0 0.0024 5.1E-08 63.9 21.6 106 577-700 280-392 (504)
135 TIGR02552 LcrH_SycD type III s 97.9 0.0002 4.4E-09 65.2 13.1 115 588-706 5-122 (135)
136 PF07079 DUF1347: Protein of u 97.9 0.027 5.9E-07 58.9 28.5 198 501-728 299-520 (549)
137 COG4783 Putative Zn-dependent 97.8 0.0012 2.5E-08 69.7 18.4 147 566-733 306-455 (484)
138 KOG2053 Mitochondrial inherita 97.8 0.11 2.3E-06 59.3 37.0 216 236-458 22-255 (932)
139 KOG0553 TPR repeat-containing 97.8 0.00016 3.5E-09 71.3 11.2 100 576-712 91-192 (304)
140 PF13812 PPR_3: Pentatricopept 97.8 2.4E-05 5.3E-10 51.4 3.9 34 566-599 1-34 (34)
141 PF13812 PPR_3: Pentatricopept 97.7 4.4E-05 9.5E-10 50.1 4.1 34 122-155 1-34 (34)
142 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.00082 1.8E-08 71.7 14.9 127 536-667 170-298 (395)
143 KOG3081 Vesicle coat complex C 97.7 0.013 2.8E-07 57.0 20.8 166 522-724 95-262 (299)
144 PF12895 Apc3: Anaphase-promot 97.7 4.1E-05 8.8E-10 63.0 3.6 77 650-727 2-82 (84)
145 PF01535 PPR: PPR repeat; Int 97.6 5.6E-05 1.2E-09 48.4 3.4 31 567-597 1-31 (31)
146 PRK14720 transcript cleavage f 97.6 0.0091 2E-07 69.9 23.3 88 502-604 118-205 (906)
147 PF13431 TPR_17: Tetratricopep 97.6 3.5E-05 7.5E-10 50.2 2.1 32 692-723 2-33 (34)
148 PF09976 TPR_21: Tetratricopep 97.6 0.0012 2.7E-08 60.8 13.3 113 614-727 24-142 (145)
149 KOG3060 Uncharacterized conser 97.6 0.0021 4.5E-08 61.8 14.6 177 549-729 26-214 (289)
150 PRK02603 photosystem I assembl 97.6 0.0011 2.3E-08 63.3 13.1 131 565-718 34-166 (172)
151 KOG0550 Molecular chaperone (D 97.6 0.00081 1.8E-08 69.0 12.4 176 543-743 177-361 (486)
152 cd00189 TPR Tetratricopeptide 97.6 0.00049 1.1E-08 57.6 9.4 91 640-730 3-95 (100)
153 KOG3060 Uncharacterized conser 97.6 0.0088 1.9E-07 57.7 18.1 166 538-706 55-228 (289)
154 KOG3081 Vesicle coat complex C 97.6 0.014 3.1E-07 56.8 19.4 157 350-514 95-255 (299)
155 PF13414 TPR_11: TPR repeat; P 97.5 0.00017 3.6E-09 56.7 5.5 62 668-729 2-64 (69)
156 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.00093 2E-08 59.1 11.0 66 640-705 42-112 (119)
157 PRK10153 DNA-binding transcrip 97.5 0.002 4.4E-08 72.1 15.6 137 561-728 332-478 (517)
158 PF01535 PPR: PPR repeat; Int 97.5 0.00012 2.5E-09 46.8 3.5 31 123-153 1-31 (31)
159 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0011 2.5E-08 58.5 10.8 95 639-733 4-106 (119)
160 PF13432 TPR_16: Tetratricopep 97.4 0.00036 7.9E-09 54.0 6.1 55 676-730 4-58 (65)
161 PLN03088 SGT1, suppressor of 97.4 0.00055 1.2E-08 73.4 9.2 108 607-716 8-117 (356)
162 PF13432 TPR_16: Tetratricopep 97.4 0.00034 7.4E-09 54.1 5.6 61 643-703 3-65 (65)
163 PF09976 TPR_21: Tetratricopep 97.4 0.0052 1.1E-07 56.6 14.4 115 579-696 24-145 (145)
164 PRK02603 photosystem I assembl 97.4 0.0014 3.1E-08 62.4 10.6 81 639-719 37-122 (172)
165 PLN03088 SGT1, suppressor of 97.4 0.0017 3.7E-08 69.6 12.3 103 572-679 8-113 (356)
166 KOG2053 Mitochondrial inherita 97.4 0.46 1E-05 54.4 41.3 88 538-626 439-532 (932)
167 CHL00033 ycf3 photosystem I as 97.3 0.0013 2.8E-08 62.5 9.8 90 637-726 35-136 (168)
168 KOG1538 Uncharacterized conser 97.3 0.041 9E-07 59.8 20.8 216 410-695 616-843 (1081)
169 COG4700 Uncharacterized protei 97.2 0.0065 1.4E-07 55.5 12.1 104 626-729 78-186 (251)
170 PF14559 TPR_19: Tetratricopep 97.2 0.00047 1E-08 53.9 4.4 63 649-711 3-67 (68)
171 PF14938 SNAP: Soluble NSF att 97.2 0.055 1.2E-06 56.2 20.9 127 573-714 101-243 (282)
172 PF10037 MRP-S27: Mitochondria 97.2 0.0037 8.1E-08 67.0 11.9 120 222-341 65-186 (429)
173 CHL00033 ycf3 photosystem I as 97.1 0.0069 1.5E-07 57.4 12.4 63 567-629 36-100 (168)
174 PF05843 Suf: Suppressor of fo 97.1 0.0076 1.6E-07 62.3 13.4 142 568-713 3-150 (280)
175 cd00189 TPR Tetratricopeptide 97.1 0.0039 8.5E-08 51.9 9.5 94 569-700 3-99 (100)
176 KOG0553 TPR repeat-containing 97.1 0.0012 2.7E-08 65.3 6.9 86 644-729 88-175 (304)
177 PF13371 TPR_9: Tetratricopept 97.1 0.0012 2.6E-08 52.5 5.7 54 677-730 3-56 (73)
178 COG4235 Cytochrome c biogenesi 97.0 0.0024 5.2E-08 63.7 8.1 108 634-741 153-265 (287)
179 PRK15363 pathogenicity island 97.0 0.015 3.3E-07 52.7 12.4 97 537-635 37-137 (157)
180 COG3898 Uncharacterized membra 97.0 0.56 1.2E-05 48.5 25.3 213 511-739 165-397 (531)
181 KOG2041 WD40 repeat protein [G 97.0 0.41 8.8E-06 52.9 24.9 203 189-421 689-905 (1189)
182 PF08579 RPM2: Mitochondrial r 97.0 0.0057 1.2E-07 51.3 8.6 77 227-303 29-114 (120)
183 PF13414 TPR_11: TPR repeat; P 96.9 0.0015 3.3E-08 51.2 5.1 64 637-700 3-69 (69)
184 PRK15331 chaperone protein Sic 96.9 0.0063 1.4E-07 55.4 9.4 87 645-731 45-133 (165)
185 PF12688 TPR_5: Tetratrico pep 96.9 0.011 2.3E-07 51.8 10.5 92 571-662 6-100 (120)
186 PF06239 ECSIT: Evolutionarily 96.9 0.0083 1.8E-07 56.9 10.3 114 212-344 34-154 (228)
187 PF14559 TPR_19: Tetratricopep 96.9 0.00092 2E-08 52.2 3.4 51 680-730 2-52 (68)
188 PF13428 TPR_14: Tetratricopep 96.9 0.0015 3.2E-08 45.7 4.1 42 670-711 2-43 (44)
189 PF14938 SNAP: Soluble NSF att 96.9 0.092 2E-06 54.5 19.2 148 541-700 100-268 (282)
190 PF12895 Apc3: Anaphase-promot 96.9 0.0026 5.5E-08 52.2 6.0 80 579-662 2-83 (84)
191 PF08579 RPM2: Mitochondrial r 96.8 0.0059 1.3E-07 51.2 7.7 78 262-339 29-115 (120)
192 PRK10153 DNA-binding transcrip 96.8 0.02 4.3E-07 64.3 14.2 81 653-733 358-450 (517)
193 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.0047 1E-07 65.6 7.6 100 668-774 74-176 (453)
194 PF13371 TPR_9: Tetratricopept 96.7 0.0044 9.6E-08 49.1 5.9 66 645-710 3-70 (73)
195 KOG2041 WD40 repeat protein [G 96.7 0.53 1.2E-05 52.1 22.8 130 199-351 767-901 (1189)
196 PF04840 Vps16_C: Vps16, C-ter 96.6 1.2 2.5E-05 46.8 28.8 111 365-492 179-289 (319)
197 KOG2280 Vacuolar assembly/sort 96.5 2 4.4E-05 48.5 30.5 105 542-662 691-795 (829)
198 PF12688 TPR_5: Tetratrico pep 96.5 0.019 4.1E-07 50.2 9.1 83 644-726 8-98 (120)
199 PF06239 ECSIT: Evolutionarily 96.4 0.011 2.3E-07 56.2 7.5 105 255-378 44-153 (228)
200 PF10037 MRP-S27: Mitochondria 96.4 0.064 1.4E-06 57.8 14.3 124 253-376 61-186 (429)
201 KOG1538 Uncharacterized conser 96.4 0.44 9.5E-06 52.2 20.0 71 159-250 600-672 (1081)
202 PRK10803 tol-pal system protei 96.4 0.016 3.5E-07 58.7 9.2 91 612-702 154-250 (263)
203 PRK10866 outer membrane biogen 96.3 0.13 2.9E-06 51.7 15.5 171 540-731 37-240 (243)
204 PF13281 DUF4071: Domain of un 96.3 0.41 8.9E-06 50.6 19.2 32 671-702 307-338 (374)
205 PRK10803 tol-pal system protei 96.3 0.071 1.5E-06 54.1 13.2 91 640-730 146-244 (263)
206 PRK10866 outer membrane biogen 96.3 0.32 7E-06 49.0 17.7 167 508-695 40-238 (243)
207 COG3898 Uncharacterized membra 96.2 1.8 4E-05 44.9 24.9 215 440-663 165-389 (531)
208 COG0457 NrfG FOG: TPR repeat [ 96.2 1.5 3.3E-05 43.4 24.8 191 535-729 59-262 (291)
209 PF05843 Suf: Suppressor of fo 96.1 0.095 2.1E-06 54.2 13.4 125 468-594 4-135 (280)
210 COG4700 Uncharacterized protei 96.1 0.4 8.7E-06 44.3 15.1 128 598-730 86-220 (251)
211 KOG1258 mRNA processing protei 96.1 3.2 6.9E-05 45.9 26.6 183 534-719 296-491 (577)
212 PRK11906 transcriptional regul 96.0 0.36 7.7E-06 51.8 16.7 161 562-726 244-430 (458)
213 KOG2280 Vacuolar assembly/sort 95.9 4.1 8.8E-05 46.2 29.3 328 126-491 441-796 (829)
214 KOG0550 Molecular chaperone (D 95.9 1.6 3.4E-05 45.8 20.4 165 542-725 256-436 (486)
215 PF03704 BTAD: Bacterial trans 95.9 0.094 2E-06 48.3 11.0 108 611-730 16-123 (146)
216 KOG2796 Uncharacterized conser 95.8 0.8 1.7E-05 44.8 16.8 186 520-709 125-326 (366)
217 KOG2796 Uncharacterized conser 95.8 0.93 2E-05 44.4 17.2 137 469-607 181-325 (366)
218 PF04840 Vps16_C: Vps16, C-ter 95.8 3 6.6E-05 43.7 29.5 110 194-319 179-288 (319)
219 KOG4555 TPR repeat-containing 95.7 0.084 1.8E-06 45.4 8.6 89 646-734 52-146 (175)
220 PF12921 ATP13: Mitochondrial 95.4 0.099 2.1E-06 46.2 8.8 53 631-683 46-102 (126)
221 KOG2114 Vacuolar assembly/sort 95.2 7.8 0.00017 44.6 24.1 174 97-285 340-517 (933)
222 PF13525 YfiO: Outer membrane 95.0 0.9 1.9E-05 44.5 15.2 47 678-724 150-199 (203)
223 PF07719 TPR_2: Tetratricopept 94.9 0.06 1.3E-06 34.9 4.4 33 670-702 2-34 (34)
224 smart00299 CLH Clathrin heavy 94.9 0.69 1.5E-05 42.1 13.1 68 600-680 68-136 (140)
225 PF00515 TPR_1: Tetratricopept 94.9 0.044 9.6E-07 35.6 3.7 33 670-702 2-34 (34)
226 PF13424 TPR_12: Tetratricopep 94.9 0.035 7.5E-07 44.6 3.9 27 671-697 48-74 (78)
227 PF07079 DUF1347: Protein of u 94.8 6.8 0.00015 41.8 31.1 459 101-607 16-531 (549)
228 PF03704 BTAD: Bacterial trans 94.7 0.25 5.4E-06 45.4 9.8 69 261-330 65-138 (146)
229 COG4235 Cytochrome c biogenesi 94.6 0.35 7.5E-06 48.7 11.0 109 462-608 153-267 (287)
230 KOG3941 Intermediate in Toll s 94.6 0.18 3.9E-06 49.6 8.5 114 210-344 52-174 (406)
231 PLN03098 LPA1 LOW PSII ACCUMUL 94.5 0.18 3.9E-06 54.0 9.1 32 702-734 245-276 (453)
232 PF04053 Coatomer_WDAD: Coatom 94.5 0.24 5.2E-06 54.4 10.4 131 577-733 272-403 (443)
233 PF13424 TPR_12: Tetratricopep 94.3 0.029 6.4E-07 45.0 2.3 58 671-728 7-71 (78)
234 KOG2114 Vacuolar assembly/sort 94.2 14 0.0003 42.7 30.7 177 197-392 339-519 (933)
235 PRK11906 transcriptional regul 94.0 0.56 1.2E-05 50.4 11.5 113 616-728 273-397 (458)
236 COG5107 RNA14 Pre-mRNA 3'-end 93.9 10 0.00023 40.4 24.5 136 429-603 397-537 (660)
237 KOG0543 FKBP-type peptidyl-pro 93.8 0.61 1.3E-05 48.8 11.0 92 640-731 260-354 (397)
238 COG0457 NrfG FOG: TPR repeat [ 93.7 7.5 0.00016 38.1 23.6 166 533-701 93-268 (291)
239 KOG1130 Predicted G-alpha GTPa 93.6 0.3 6.5E-06 50.6 8.3 129 602-730 196-342 (639)
240 KOG2066 Vacuolar assembly/sort 93.4 13 0.00027 42.7 20.8 47 365-411 394-440 (846)
241 PF13525 YfiO: Outer membrane 93.4 1.4 3E-05 43.2 12.5 140 570-731 9-169 (203)
242 COG3118 Thioredoxin domain-con 93.3 1.8 3.9E-05 43.6 12.9 117 610-729 143-263 (304)
243 smart00299 CLH Clathrin heavy 93.3 2.9 6.3E-05 37.9 13.9 123 163-304 13-136 (140)
244 PF12921 ATP13: Mitochondrial 93.2 0.32 7E-06 43.0 6.9 94 536-645 3-96 (126)
245 KOG1130 Predicted G-alpha GTPa 93.1 4 8.7E-05 42.7 15.3 125 568-720 237-372 (639)
246 PF08631 SPO22: Meiosis protei 93.1 10 0.00023 39.1 19.2 66 535-600 121-191 (278)
247 PF04184 ST7: ST7 protein; In 93.1 3.5 7.5E-05 44.7 15.3 101 605-705 263-382 (539)
248 PF09205 DUF1955: Domain of un 93.0 4.6 0.0001 35.3 13.1 140 577-735 13-152 (161)
249 COG4105 ComL DNA uptake lipopr 92.9 11 0.00024 37.5 18.7 56 677-732 175-233 (254)
250 PF13512 TPR_18: Tetratricopep 92.6 0.79 1.7E-05 41.0 8.5 70 647-716 20-97 (142)
251 PRK15331 chaperone protein Sic 92.3 2.7 5.9E-05 38.6 11.7 51 269-320 48-98 (165)
252 KOG1920 IkappaB kinase complex 92.2 17 0.00037 43.7 20.7 152 548-727 893-1050(1265)
253 PF13512 TPR_18: Tetratricopep 92.1 2.8 6.1E-05 37.6 11.3 113 574-703 18-133 (142)
254 COG4785 NlpI Lipoprotein NlpI, 92.1 3.8 8.2E-05 39.1 12.5 179 545-730 75-264 (297)
255 COG3118 Thioredoxin domain-con 92.0 7.6 0.00016 39.3 15.3 153 574-729 142-299 (304)
256 PF07035 Mic1: Colon cancer-as 91.8 11 0.00023 35.1 15.2 131 279-421 15-147 (167)
257 COG1729 Uncharacterized protei 91.8 1.3 2.9E-05 44.1 9.8 86 576-663 151-241 (262)
258 PRK12798 chemotaxis protein; R 91.5 22 0.00048 38.0 20.7 166 548-716 125-303 (421)
259 PF13181 TPR_8: Tetratricopept 91.5 0.28 6.1E-06 31.6 3.5 32 671-702 3-34 (34)
260 KOG2396 HAT (Half-A-TPR) repea 91.4 24 0.00053 38.4 31.5 131 564-702 425-564 (568)
261 KOG3941 Intermediate in Toll s 91.4 1.1 2.4E-05 44.3 8.7 99 554-653 53-174 (406)
262 COG1729 Uncharacterized protei 91.2 1.7 3.8E-05 43.3 10.0 95 611-705 151-251 (262)
263 KOG0543 FKBP-type peptidyl-pro 91.2 4.3 9.3E-05 42.8 13.1 92 536-629 258-354 (397)
264 PF10300 DUF3808: Protein of u 91.1 2.6 5.7E-05 47.1 12.8 81 581-663 248-331 (468)
265 PF04053 Coatomer_WDAD: Coatom 90.9 4.7 0.0001 44.5 14.1 156 132-319 271-428 (443)
266 PF09613 HrpB1_HrpK: Bacterial 90.8 5.4 0.00012 36.6 11.9 91 609-701 18-109 (160)
267 PF08631 SPO22: Meiosis protei 90.6 23 0.0005 36.6 19.7 135 226-362 39-191 (278)
268 PF04097 Nic96: Nup93/Nic96; 90.5 22 0.00048 41.4 19.9 47 224-271 112-158 (613)
269 PF04184 ST7: ST7 protein; In 90.4 5 0.00011 43.5 13.0 145 578-737 180-329 (539)
270 PF00637 Clathrin: Region in C 90.4 0.037 8.1E-07 50.7 -2.3 76 513-591 20-95 (143)
271 KOG2610 Uncharacterized conser 90.3 3 6.5E-05 42.4 10.7 159 578-739 115-283 (491)
272 KOG4555 TPR repeat-containing 90.1 2 4.4E-05 37.3 8.0 53 575-629 52-105 (175)
273 PF13281 DUF4071: Domain of un 90.0 16 0.00034 39.0 16.3 24 433-456 309-332 (374)
274 PF10300 DUF3808: Protein of u 89.4 2.9 6.2E-05 46.8 11.2 157 569-728 191-365 (468)
275 COG4105 ComL DNA uptake lipopr 89.4 21 0.00046 35.5 15.5 158 546-703 45-238 (254)
276 PF13170 DUF4003: Protein of u 89.0 15 0.00032 38.2 15.2 48 139-186 79-132 (297)
277 KOG1585 Protein required for f 88.6 26 0.00057 34.4 15.4 23 538-560 94-116 (308)
278 KOG4279 Serine/threonine prote 88.3 11 0.00025 42.6 14.1 100 575-702 296-399 (1226)
279 PF14853 Fis1_TPR_C: Fis1 C-te 88.2 0.97 2.1E-05 32.8 4.2 36 675-710 7-42 (53)
280 KOG1258 mRNA processing protei 88.0 50 0.0011 37.0 26.8 125 24-150 47-179 (577)
281 PF13428 TPR_14: Tetratricopep 87.9 1.1 2.4E-05 31.1 4.3 33 568-602 3-35 (44)
282 PF13176 TPR_7: Tetratricopept 87.7 0.82 1.8E-05 30.0 3.4 27 672-698 2-28 (36)
283 PF09613 HrpB1_HrpK: Bacterial 87.6 3.1 6.7E-05 38.1 8.0 52 681-732 22-73 (160)
284 KOG4648 Uncharacterized conser 87.5 3.8 8.3E-05 41.8 9.2 112 574-725 105-217 (536)
285 COG3947 Response regulator con 87.2 36 0.00078 34.4 15.5 147 583-731 150-341 (361)
286 PF00637 Clathrin: Region in C 87.1 0.028 6.1E-07 51.6 -5.5 85 163-250 13-97 (143)
287 KOG4234 TPR repeat-containing 86.7 2 4.4E-05 40.3 6.4 86 647-732 105-197 (271)
288 COG4649 Uncharacterized protei 86.4 11 0.00024 34.8 10.6 52 404-459 68-124 (221)
289 TIGR02561 HrpB1_HrpK type III 86.3 3.7 8E-05 36.9 7.6 53 681-733 22-74 (153)
290 PF07035 Mic1: Colon cancer-as 86.0 29 0.00064 32.3 14.0 133 44-185 16-148 (167)
291 PF00515 TPR_1: Tetratricopept 85.7 1.2 2.6E-05 28.6 3.3 31 568-600 3-33 (34)
292 PF02259 FAT: FAT domain; Int 85.4 56 0.0012 35.0 18.7 145 565-715 145-304 (352)
293 cd00923 Cyt_c_Oxidase_Va Cytoc 85.0 7.8 0.00017 31.9 8.1 68 656-735 29-96 (103)
294 PF13176 TPR_7: Tetratricopept 84.7 1.5 3.2E-05 28.8 3.4 26 568-593 1-26 (36)
295 COG3629 DnrI DNA-binding trans 84.6 5.4 0.00012 40.5 8.9 73 259-332 154-231 (280)
296 PRK09687 putative lyase; Provi 84.2 55 0.0012 33.8 25.6 235 90-338 36-277 (280)
297 KOG1920 IkappaB kinase complex 84.1 1.1E+02 0.0024 37.4 21.7 84 473-567 973-1058(1265)
298 PF02284 COX5A: Cytochrome c o 83.1 9.8 0.00021 31.7 8.0 68 656-735 32-99 (108)
299 COG4649 Uncharacterized protei 82.6 41 0.0009 31.2 16.0 129 576-705 68-202 (221)
300 PF13170 DUF4003: Protein of u 82.2 47 0.001 34.5 14.9 92 551-645 119-225 (297)
301 PF04097 Nic96: Nup93/Nic96; 82.0 1.1E+02 0.0024 35.7 23.9 88 299-391 264-355 (613)
302 PF10345 Cohesin_load: Cohesin 81.8 1.1E+02 0.0024 35.7 31.1 125 229-354 106-251 (608)
303 KOG4648 Uncharacterized conser 81.0 1.8 3.9E-05 44.0 3.9 80 645-724 105-186 (536)
304 PRK10941 hypothetical protein; 81.0 4.3 9.4E-05 41.3 6.7 59 671-729 183-241 (269)
305 PF09205 DUF1955: Domain of un 80.8 39 0.00085 29.8 12.0 64 295-359 88-151 (161)
306 KOG2066 Vacuolar assembly/sort 80.8 1.2E+02 0.0026 35.3 23.7 74 231-310 364-440 (846)
307 PF07719 TPR_2: Tetratricopept 80.3 2.7 5.8E-05 26.8 3.4 31 568-600 3-33 (34)
308 PRK15180 Vi polysaccharide bio 79.8 11 0.00023 40.5 9.1 126 579-709 302-432 (831)
309 KOG0276 Vesicle coat complex C 79.8 12 0.00025 41.5 9.6 149 205-389 599-747 (794)
310 smart00028 TPR Tetratricopepti 79.8 3.7 8.1E-05 25.0 4.0 31 671-701 3-33 (34)
311 COG5107 RNA14 Pre-mRNA 3'-end 79.6 96 0.0021 33.5 31.5 80 189-270 39-121 (660)
312 TIGR02561 HrpB1_HrpK type III 79.5 31 0.00067 31.2 10.6 85 614-700 23-108 (153)
313 KOG4234 TPR repeat-containing 79.0 33 0.00072 32.6 11.0 61 645-707 142-206 (271)
314 PF10602 RPN7: 26S proteasome 78.8 14 0.0003 35.0 9.1 58 537-594 38-101 (177)
315 KOG2610 Uncharacterized conser 78.5 23 0.0005 36.4 10.6 146 478-626 116-272 (491)
316 COG2976 Uncharacterized protei 78.5 52 0.0011 31.3 12.1 115 584-703 70-193 (207)
317 COG3629 DnrI DNA-binding trans 78.4 8.9 0.00019 39.0 7.9 61 671-731 155-215 (280)
318 PF02259 FAT: FAT domain; Int 78.0 30 0.00065 37.0 12.9 179 542-731 5-212 (352)
319 PF07721 TPR_4: Tetratricopept 77.7 2.9 6.2E-05 25.0 2.6 24 704-727 2-25 (26)
320 TIGR02508 type_III_yscG type I 76.7 27 0.00059 29.0 8.6 61 543-606 47-107 (115)
321 PF15161 Neuropep_like: Neurop 76.2 1 2.2E-05 31.9 0.4 18 823-841 11-28 (65)
322 PF13431 TPR_17: Tetratricopep 75.6 4 8.6E-05 26.4 3.1 22 534-555 12-33 (34)
323 KOG1941 Acetylcholine receptor 75.5 13 0.00029 38.4 8.1 128 572-699 128-276 (518)
324 KOG4642 Chaperone-dependent E3 74.9 17 0.00037 35.5 8.2 80 651-730 24-105 (284)
325 KOG4570 Uncharacterized conser 74.8 21 0.00046 36.3 9.1 48 274-321 116-163 (418)
326 COG1747 Uncharacterized N-term 74.8 1.4E+02 0.003 33.0 15.5 171 125-303 69-249 (711)
327 KOG2063 Vacuolar assembly/sort 74.3 2.1E+02 0.0044 34.6 19.6 115 225-339 506-637 (877)
328 KOG0890 Protein kinase of the 74.2 3.1E+02 0.0068 36.7 29.3 61 670-732 1671-1731(2382)
329 PF06552 TOM20_plant: Plant sp 74.2 23 0.0005 33.2 8.6 26 684-709 95-120 (186)
330 KOG1308 Hsp70-interacting prot 73.8 2.3 4.9E-05 43.6 2.3 50 679-728 158-207 (377)
331 PRK09687 putative lyase; Provi 73.7 1.2E+02 0.0025 31.4 23.6 60 360-422 203-262 (280)
332 PF11207 DUF2989: Protein of u 73.0 17 0.00037 34.8 7.7 70 654-723 123-198 (203)
333 KOG1586 Protein required for f 72.7 82 0.0018 31.0 12.0 108 596-703 68-188 (288)
334 KOG1941 Acetylcholine receptor 72.6 1.3E+02 0.0028 31.6 15.6 13 826-841 406-418 (518)
335 COG4785 NlpI Lipoprotein NlpI, 72.2 99 0.0021 30.0 14.6 126 4-133 81-209 (297)
336 PF13374 TPR_10: Tetratricopep 72.2 8 0.00017 25.9 4.2 25 672-696 5-29 (42)
337 PF13174 TPR_6: Tetratricopept 71.7 6.2 0.00014 24.7 3.4 27 675-701 6-32 (33)
338 KOG1585 Protein required for f 71.7 1.1E+02 0.0024 30.3 16.2 46 193-250 92-137 (308)
339 KOG1550 Extracellular protein 71.4 64 0.0014 37.1 13.6 88 652-741 343-435 (552)
340 PF10602 RPN7: 26S proteasome 71.2 38 0.00082 32.1 9.8 16 304-319 124-139 (177)
341 PF13181 TPR_8: Tetratricopept 71.0 4.6 0.0001 25.7 2.6 26 569-594 4-29 (34)
342 PF13374 TPR_10: Tetratricopep 70.7 6.3 0.00014 26.4 3.4 27 568-594 4-30 (42)
343 COG3947 Response regulator con 70.4 58 0.0013 33.0 10.9 57 433-491 283-339 (361)
344 PF07721 TPR_4: Tetratricopept 70.3 8.1 0.00018 23.0 3.4 22 538-559 4-25 (26)
345 KOG3824 Huntingtin interacting 69.6 12 0.00025 37.9 6.0 63 647-709 126-190 (472)
346 cd00923 Cyt_c_Oxidase_Va Cytoc 69.2 30 0.00065 28.6 7.2 62 582-645 23-84 (103)
347 TIGR02508 type_III_yscG type I 69.2 33 0.00072 28.5 7.4 77 73-152 21-98 (115)
348 KOG4507 Uncharacterized conser 69.1 19 0.00041 39.8 7.9 126 551-712 589-719 (886)
349 PF06552 TOM20_plant: Plant sp 68.5 11 0.00023 35.3 5.2 34 685-718 51-84 (186)
350 KOG0276 Vesicle coat complex C 68.0 65 0.0014 36.1 11.6 101 102-219 648-748 (794)
351 KOG4570 Uncharacterized conser 67.5 29 0.00064 35.4 8.3 104 424-529 59-164 (418)
352 KOG2471 TPR repeat-containing 67.2 1.8E+02 0.004 31.9 14.4 95 542-637 247-371 (696)
353 PF04910 Tcf25: Transcriptiona 67.1 66 0.0014 34.6 11.7 64 668-731 99-167 (360)
354 PF10345 Cohesin_load: Cohesin 66.6 2.6E+02 0.0057 32.7 38.3 100 222-322 58-168 (608)
355 PF07720 TPR_3: Tetratricopept 65.9 13 0.00028 24.5 3.8 32 671-702 3-36 (36)
356 PF06957 COPI_C: Coatomer (COP 65.5 22 0.00048 38.5 7.7 108 577-702 215-333 (422)
357 PHA02875 ankyrin repeat protei 64.5 1.2E+02 0.0027 33.3 14.0 20 198-217 71-90 (413)
358 PF02284 COX5A: Cytochrome c o 64.0 43 0.00093 28.1 7.2 60 584-645 28-87 (108)
359 KOG1586 Protein required for f 63.6 1.6E+02 0.0034 29.1 18.8 98 616-713 129-241 (288)
360 KOG1550 Extracellular protein 63.3 2.5E+02 0.0054 32.4 16.3 83 410-495 228-323 (552)
361 PF14561 TPR_20: Tetratricopep 63.1 75 0.0016 26.1 8.8 75 654-730 9-86 (90)
362 PF11207 DUF2989: Protein of u 62.2 51 0.0011 31.6 8.5 74 583-657 123-198 (203)
363 PF13174 TPR_6: Tetratricopept 61.1 6.8 0.00015 24.6 1.9 28 705-732 2-29 (33)
364 PHA02875 ankyrin repeat protei 60.5 1.9E+02 0.0042 31.7 14.7 17 371-387 140-156 (413)
365 PF13934 ELYS: Nuclear pore co 60.5 92 0.002 30.9 10.6 97 578-683 90-186 (226)
366 KOG2471 TPR repeat-containing 60.3 70 0.0015 34.9 9.9 207 514-739 31-273 (696)
367 KOG0376 Serine-threonine phosp 60.2 6.4 0.00014 42.5 2.5 81 647-727 14-96 (476)
368 PRK11619 lytic murein transgly 60.2 3.4E+02 0.0074 31.9 34.5 135 32-173 43-179 (644)
369 KOG0545 Aryl-hydrocarbon recep 59.2 48 0.001 32.7 7.8 86 644-729 185-290 (329)
370 COG4455 ImpE Protein of avirul 58.6 30 0.00065 33.4 6.3 67 643-709 7-75 (273)
371 KOG3364 Membrane protein invol 58.4 66 0.0014 28.6 7.8 34 675-708 77-110 (149)
372 smart00386 HAT HAT (Half-A-TPR 58.3 16 0.00035 22.6 3.4 29 683-711 1-29 (33)
373 PF09670 Cas_Cas02710: CRISPR- 57.2 1.2E+02 0.0025 33.0 11.6 120 577-697 142-269 (379)
374 PF13929 mRNA_stabil: mRNA sta 56.6 69 0.0015 32.7 8.8 97 20-116 162-263 (292)
375 KOG0686 COP9 signalosome, subu 56.0 2.9E+02 0.0063 29.7 13.8 180 537-770 152-352 (466)
376 KOG2659 LisH motif-containing 56.0 2.1E+02 0.0045 28.2 11.5 91 569-663 29-129 (228)
377 KOG4718 Non-SMC (structural ma 55.8 4.7 0.0001 38.0 0.5 6 863-868 221-226 (235)
378 PF15469 Sec5: Exocyst complex 55.2 1.1E+02 0.0024 29.1 10.0 88 606-709 91-179 (182)
379 PF14561 TPR_20: Tetratricopep 54.7 18 0.0004 29.7 3.8 41 689-729 8-48 (90)
380 cd00280 TRFH Telomeric Repeat 54.2 1E+02 0.0022 29.0 8.8 37 675-712 117-153 (200)
381 PF07575 Nucleopor_Nup85: Nup8 53.9 1.5E+02 0.0032 34.4 12.5 27 21-48 148-174 (566)
382 KOG0686 COP9 signalosome, subu 53.6 2.6E+02 0.0057 30.0 12.6 165 365-563 152-332 (466)
383 COG4976 Predicted methyltransf 53.1 26 0.00056 34.1 4.9 57 646-702 4-62 (287)
384 PF13762 MNE1: Mitochondrial s 53.0 1.4E+02 0.003 27.2 9.3 81 261-341 42-128 (145)
385 smart00028 TPR Tetratricopepti 52.4 19 0.00042 21.4 3.1 27 568-594 3-29 (34)
386 PF13934 ELYS: Nuclear pore co 51.3 2.2E+02 0.0048 28.2 11.6 114 548-671 91-206 (226)
387 PF09477 Type_III_YscG: Bacter 51.2 1.1E+02 0.0024 25.9 7.6 85 516-604 22-106 (116)
388 PF09986 DUF2225: Uncharacteri 51.1 79 0.0017 31.1 8.3 60 671-730 120-192 (214)
389 PRK11619 lytic murein transgly 50.5 4.8E+02 0.01 30.7 26.7 125 580-711 255-384 (644)
390 KOG3824 Huntingtin interacting 50.0 35 0.00077 34.6 5.5 78 679-768 126-203 (472)
391 PF14427 Pput2613-deam: Pput_2 49.4 35 0.00076 28.6 4.5 59 793-852 44-102 (118)
392 KOG2300 Uncharacterized conser 49.1 4.1E+02 0.0088 29.4 15.3 179 552-730 299-513 (629)
393 PF07163 Pex26: Pex26 protein; 48.8 1.5E+02 0.0033 30.1 9.6 88 573-663 90-184 (309)
394 KOG0292 Vesicle coat complex C 48.7 21 0.00046 41.5 4.3 100 610-736 629-728 (1202)
395 TIGR02710 CRISPR-associated pr 46.8 2.4E+02 0.0053 30.3 11.5 30 575-604 139-168 (380)
396 PF14853 Fis1_TPR_C: Fis1 C-te 46.6 56 0.0012 23.7 4.8 36 571-608 6-41 (53)
397 PF13762 MNE1: Mitochondrial s 45.8 97 0.0021 28.1 7.2 51 120-170 77-128 (145)
398 KOG1464 COP9 signalosome, subu 45.5 3.3E+02 0.0072 27.4 13.6 217 470-698 70-328 (440)
399 COG4455 ImpE Protein of avirul 45.5 3E+02 0.0066 26.9 10.8 128 568-704 3-140 (273)
400 PF14863 Alkyl_sulf_dimr: Alky 44.9 78 0.0017 28.6 6.5 72 652-726 56-127 (141)
401 KOG2063 Vacuolar assembly/sort 44.5 6.6E+02 0.014 30.5 19.5 124 575-716 600-745 (877)
402 COG2976 Uncharacterized protei 44.2 3E+02 0.0065 26.5 10.8 88 65-152 97-189 (207)
403 PRK15180 Vi polysaccharide bio 43.9 1.7E+02 0.0037 31.9 9.7 139 614-756 302-442 (831)
404 KOG4077 Cytochrome c oxidase, 43.7 1.9E+02 0.0041 25.4 8.1 45 657-701 72-117 (149)
405 KOG3507 DNA-directed RNA polym 43.4 8 0.00017 28.0 0.0 10 825-834 20-29 (62)
406 PF11768 DUF3312: Protein of u 43.1 1.6E+02 0.0035 33.0 9.7 24 539-562 412-435 (545)
407 PF08225 Antimicrobial19: Pseu 43.0 14 0.00029 20.5 0.8 11 830-840 11-21 (23)
408 PHA02537 M terminase endonucle 42.3 1.6E+02 0.0035 29.2 8.7 128 538-701 67-210 (230)
409 COG2178 Predicted RNA-binding 41.7 1.8E+02 0.0039 27.8 8.4 56 540-595 34-98 (204)
410 PF04910 Tcf25: Transcriptiona 41.6 4.8E+02 0.01 28.1 16.4 88 609-700 111-224 (360)
411 PF11846 DUF3366: Domain of un 41.5 84 0.0018 30.2 6.9 37 664-700 139-175 (193)
412 KOG4077 Cytochrome c oxidase, 40.5 94 0.002 27.2 5.9 33 51-83 78-110 (149)
413 TIGR03504 FimV_Cterm FimV C-te 40.4 66 0.0014 22.3 4.1 23 229-251 5-27 (44)
414 PF14689 SPOB_a: Sensor_kinase 40.4 45 0.00098 25.1 3.7 45 583-629 7-51 (62)
415 PRK11509 hydrogenase-1 operon 39.8 20 0.00043 31.9 2.0 71 742-827 30-103 (132)
416 TIGR03504 FimV_Cterm FimV C-te 39.7 60 0.0013 22.5 3.9 23 572-594 5-27 (44)
417 PF07163 Pex26: Pex26 protein; 39.6 2.6E+02 0.0057 28.5 9.6 87 230-316 90-181 (309)
418 PF04190 DUF410: Protein of un 39.5 4.3E+02 0.0093 26.9 13.6 83 190-287 88-170 (260)
419 COG5159 RPN6 26S proteasome re 39.4 4.3E+02 0.0094 26.9 12.7 28 475-502 13-40 (421)
420 PF10366 Vps39_1: Vacuolar sor 39.3 93 0.002 26.7 5.9 28 567-594 40-67 (108)
421 COG4890 Predicted outer membra 38.8 18 0.00038 22.9 1.0 11 802-812 11-21 (37)
422 PF11663 Toxin_YhaV: Toxin wit 38.7 33 0.00071 30.3 3.0 42 568-611 97-138 (140)
423 cd02965 HyaE HyaE family; HyaE 38.7 21 0.00045 30.7 1.8 70 741-826 22-94 (111)
424 KOG0551 Hsp90 co-chaperone CNS 38.3 1.2E+02 0.0026 31.5 7.3 87 638-724 82-174 (390)
425 KOG4642 Chaperone-dependent E3 38.2 2.8E+02 0.006 27.6 9.3 53 548-602 23-78 (284)
426 PF04190 DUF410: Protein of un 37.7 4.5E+02 0.0099 26.7 17.6 31 534-564 89-119 (260)
427 PRK02935 hypothetical protein; 37.3 18 0.0004 29.9 1.2 25 808-841 62-86 (110)
428 PF12069 DUF3549: Protein of u 37.2 5.3E+02 0.011 27.3 13.4 106 94-205 169-275 (340)
429 PF13929 mRNA_stabil: mRNA sta 37.1 4.8E+02 0.01 26.8 14.9 110 207-316 143-261 (292)
430 PF11663 Toxin_YhaV: Toxin wit 36.8 42 0.00091 29.7 3.4 31 135-167 108-138 (140)
431 PRK10941 hypothetical protein; 36.7 1.5E+02 0.0032 30.3 7.9 69 642-710 186-256 (269)
432 KOG0403 Neoplastic transformat 36.2 6.1E+02 0.013 27.7 23.2 72 366-441 512-586 (645)
433 PRK13800 putative oxidoreducta 36.0 9.3E+02 0.02 29.8 23.1 38 383-421 624-661 (897)
434 PF10579 Rapsyn_N: Rapsyn N-te 36.0 61 0.0013 25.8 3.8 45 615-659 20-65 (80)
435 PF15015 NYD-SP12_N: Spermatog 36.0 51 0.0011 35.1 4.4 46 679-724 238-283 (569)
436 cd08819 CARD_MDA5_2 Caspase ac 35.7 2.2E+02 0.0048 23.2 6.9 65 348-414 22-86 (88)
437 PF11525 CopK: Copper resistan 34.9 15 0.00033 27.7 0.4 21 843-863 7-27 (73)
438 PF12862 Apc5: Anaphase-promot 34.8 79 0.0017 26.1 4.8 50 679-728 8-66 (94)
439 TIGR02414 pepN_proteo aminopep 34.4 9.2E+02 0.02 29.6 15.2 122 600-724 703-835 (863)
440 PF09477 Type_III_YscG: Bacter 33.9 2.2E+02 0.0048 24.3 6.9 78 72-152 21-99 (116)
441 PF07575 Nucleopor_Nup85: Nup8 33.8 3.4E+02 0.0074 31.4 11.4 93 191-285 371-465 (566)
442 PRK14015 pepN aminopeptidase N 33.8 9.2E+02 0.02 29.6 15.2 122 600-724 713-845 (875)
443 TIGR00686 phnA alkylphosphonat 33.3 16 0.00034 30.6 0.3 31 823-853 17-48 (109)
444 PF11768 DUF3312: Protein of u 32.4 5.7E+02 0.012 28.9 11.8 25 196-220 412-436 (545)
445 PF10475 DUF2450: Protein of u 32.4 4.4E+02 0.0095 27.3 10.9 52 264-321 104-155 (291)
446 COG5108 RPO41 Mitochondrial DN 31.8 2.7E+02 0.0059 31.8 9.2 47 228-274 33-81 (1117)
447 PF01147 Crust_neurohorm: Crus 31.7 7.7 0.00017 30.2 -1.6 13 823-835 18-30 (73)
448 PF11848 DUF3368: Domain of un 31.7 1E+02 0.0023 21.7 4.2 38 29-66 9-46 (48)
449 PF08424 NRDE-2: NRDE-2, neces 31.6 6.2E+02 0.014 26.7 12.0 113 583-699 48-184 (321)
450 KOG0991 Replication factor C, 31.4 3.4E+02 0.0073 26.9 8.7 136 369-510 136-282 (333)
451 PF11848 DUF3368: Domain of un 31.3 1.2E+02 0.0026 21.4 4.4 35 132-166 12-46 (48)
452 PF12862 Apc5: Anaphase-promot 31.2 1.3E+02 0.0029 24.8 5.6 27 674-700 46-72 (94)
453 COG2912 Uncharacterized conser 30.7 1.5E+02 0.0032 30.1 6.5 55 674-728 186-240 (269)
454 COG5431 Uncharacterized metal- 30.7 15 0.00032 30.3 -0.3 12 856-867 46-57 (117)
455 KOG2582 COP9 signalosome, subu 30.6 5.1E+02 0.011 27.6 10.3 25 497-521 72-96 (422)
456 PRK13342 recombination factor 30.4 7.7E+02 0.017 27.1 13.6 34 124-157 229-265 (413)
457 PF10579 Rapsyn_N: Rapsyn N-te 29.8 1.1E+02 0.0024 24.3 4.3 47 578-624 18-66 (80)
458 COG4896 Uncharacterized protei 29.5 24 0.00052 25.8 0.6 21 818-842 28-50 (68)
459 PF10366 Vps39_1: Vacuolar sor 29.5 2.7E+02 0.0059 23.8 7.2 28 123-150 40-67 (108)
460 COG3019 Predicted metal-bindin 29.4 68 0.0015 28.5 3.4 48 802-851 8-58 (149)
461 KOG1811 Predicted Zn2+-binding 29.3 3.6E+02 0.0077 30.4 9.5 98 639-738 558-655 (1141)
462 PF00244 14-3-3: 14-3-3 protei 29.3 5.4E+02 0.012 25.7 10.4 185 572-770 7-222 (236)
463 PF11846 DUF3366: Domain of un 29.2 1.5E+02 0.0033 28.5 6.4 32 632-663 139-170 (193)
464 PF08311 Mad3_BUB1_I: Mad3/BUB 28.6 4.1E+02 0.0089 23.4 8.9 43 518-560 81-124 (126)
465 PRK13342 recombination factor 28.3 8.3E+02 0.018 26.8 14.4 44 225-268 229-275 (413)
466 PF11023 DUF2614: Protein of u 28.3 40 0.00086 28.6 1.8 14 828-841 72-85 (114)
467 COG5159 RPN6 26S proteasome re 27.7 6.8E+02 0.015 25.6 12.6 273 401-700 10-316 (421)
468 cd08819 CARD_MDA5_2 Caspase ac 27.4 3E+02 0.0066 22.5 6.5 39 204-243 48-86 (88)
469 PRK10564 maltose regulon perip 27.1 98 0.0021 31.8 4.7 41 568-608 259-299 (303)
470 PF08311 Mad3_BUB1_I: Mad3/BUB 26.9 2.8E+02 0.0061 24.5 7.1 42 687-728 81-124 (126)
471 PF11838 ERAP1_C: ERAP1-like C 26.8 7.4E+02 0.016 25.8 18.2 202 496-713 14-246 (324)
472 PRK10564 maltose regulon perip 26.8 81 0.0018 32.4 4.0 31 296-326 260-290 (303)
473 PF14376 Haem_bd: Haem-binding 26.6 23 0.0005 31.9 0.2 8 826-833 42-49 (137)
474 COG3058 FdhE Uncharacterized p 26.5 31 0.00066 34.4 1.0 16 826-841 253-268 (308)
475 KOG3807 Predicted membrane pro 26.0 4.2E+02 0.009 27.6 8.7 115 574-707 283-400 (556)
476 KOG1498 26S proteasome regulat 25.3 5.3E+02 0.011 27.7 9.5 123 642-764 136-273 (439)
477 PF04034 DUF367: Domain of unk 25.0 4.3E+02 0.0094 23.3 7.5 61 636-696 65-126 (127)
478 COG2909 MalT ATP-dependent tra 24.8 1.3E+03 0.028 27.9 23.6 84 103-186 427-526 (894)
479 COG0790 FOG: TPR repeat, SEL1 24.7 7.7E+02 0.017 25.3 17.4 81 375-458 53-142 (292)
480 smart00777 Mad3_BUB1_I Mad3/BU 23.9 1.9E+02 0.0041 25.6 5.3 68 654-727 50-123 (125)
481 PRK09169 hypothetical protein; 23.9 2E+03 0.043 29.8 39.0 469 226-729 125-689 (2316)
482 KOG0292 Vesicle coat complex C 23.9 2E+02 0.0043 34.1 6.7 48 658-705 1071-1120(1202)
483 PF14689 SPOB_a: Sensor_kinase 23.4 1.2E+02 0.0025 22.9 3.4 25 570-594 27-51 (62)
484 KOG4567 GTPase-activating prot 23.3 3.5E+02 0.0075 28.0 7.5 57 243-304 263-319 (370)
485 COG4855 Uncharacterized protei 21.8 26 0.00056 26.2 -0.3 10 827-836 65-74 (76)
486 PRK11639 zinc uptake transcrip 21.6 2.3E+02 0.0049 26.6 5.8 48 571-618 30-77 (169)
487 TIGR01503 MthylAspMut_E methyl 21.2 5.2E+02 0.011 28.5 8.8 47 342-391 68-114 (480)
488 PF02184 HAT: HAT (Half-A-TPR) 21.2 1.8E+02 0.0039 18.6 3.3 27 683-710 1-27 (32)
489 cd08326 CARD_CASP9 Caspase act 20.6 3.8E+02 0.0083 21.7 6.1 40 203-242 41-80 (84)
490 KOG2422 Uncharacterized conser 20.6 7.9E+02 0.017 28.0 10.1 102 611-714 248-388 (665)
491 PRK10220 hypothetical protein; 20.5 36 0.00078 28.6 0.2 30 824-853 19-49 (111)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.6e-159 Score=1425.26 Aligned_cols=802 Identities=32% Similarity=0.540 Sum_probs=764.7
Q ss_pred CCCCcchHHHHHHHHhCCChhHHHHHHHHHhhcCCCCCcccHHHHHHHHhccCChHHHHHHHHHh-hhcCCCChhhhhHH
Q 047992 19 KSNPRFRDTHLDFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFL-NLVTEIDVFVKTKL 97 (868)
Q Consensus 19 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~-~~~~~~~~~~~~~l 97 (868)
.|++..++.++.++++.|++++|+.+|+.|...|..|+..+|..++++|.+.+.+..|.++|..+ +.+..++..++|+|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 44555789999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHhcCChhHHHHHHhhcCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHH
Q 047992 98 LSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGK 177 (868)
Q Consensus 98 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 177 (868)
+.+|+++|+++.|+++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||.+||+++|++|+..+++..+.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccC
Q 047992 178 LMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLG 257 (868)
Q Consensus 178 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 257 (868)
++|..+++.|+.+|..++|+||++|+++|++++|.++|++|+.+|+++||+||.+|++.|++++|+++|++|.+.|+.||
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd 287 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHH
Q 047992 258 VVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISA 337 (868)
Q Consensus 258 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 337 (868)
..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+||++|.+|++.|++++|.++|++|. .||..+|++++.+
T Consensus 288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~ 363 (857)
T PLN03077 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISG 363 (857)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999995 3666777666666
Q ss_pred HhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHH
Q 047992 338 CTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELF 417 (868)
Q Consensus 338 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 417 (868)
|.+.|++++|.+++..|.+.|+.||. .+|++++.+|++.|++++|.+++
T Consensus 364 ~~~~g~~~~A~~lf~~M~~~g~~Pd~-------------------------------~t~~~ll~a~~~~g~~~~a~~l~ 412 (857)
T PLN03077 364 YEKNGLPDKALETYALMEQDNVSPDE-------------------------------ITIASVLSACACLGDLDVGVKLH 412 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCCc-------------------------------eeHHHHHHHHhccchHHHHHHHH
Confidence 66666666666666666666655555 45555555555666666667777
Q ss_pred HHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCC
Q 047992 418 IKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFY 497 (868)
Q Consensus 418 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 497 (868)
..|.+.|+.|+..+|++||++|+++|++++|.++|++|. .+|.++|++||.+|+++|+.++|+++|++|.. +++
T Consensus 413 ~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~ 486 (857)
T PLN03077 413 ELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLK 486 (857)
T ss_pred HHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCC
Confidence 788888999999999999999999999999999999995 47899999999999999999999999999986 699
Q ss_pred CCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHH
Q 047992 498 PNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYV 577 (868)
Q Consensus 498 p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~ 577 (868)
||.+||.++|.+|++.|+++.|+++|..+++.|+.+|..++|+|+++|+|||++++|.++|+.+ .+|+++||+||.+|+
T Consensus 487 pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~ 565 (857)
T PLN03077 487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYV 565 (857)
T ss_pred CCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHH
Q 047992 578 LHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAM 657 (868)
Q Consensus 578 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~ 657 (868)
++|+.++|+++|++|.+.|++||.+||+++|.+|+|.|++++|+++|++|.+++|+.|+.+||+||||+|+|+|+++||+
T Consensus 566 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~ 645 (857)
T PLN03077 566 AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY 645 (857)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCC
Q 047992 658 EFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRRNS 737 (868)
Q Consensus 658 ~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~ 737 (868)
+++++||++||..+|++|+++|+.|||++.|+.+++++++++|+++++|++|+|+|+..|+|++|.++|+.|+++|++|+
T Consensus 646 ~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~ 725 (857)
T PLN03077 646 NFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVD 725 (857)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccEEEEcCEEEEEEeCCCCCCchHHHHHHHH-------hCCCccCCCCCCCCCCchhhhhhhhhhccchHHHHHHHhh
Q 047992 738 FGQCWIEVKNLVYTFVTGGWSESYSDLLYSWLQ-------NVPENVTARSSHSGLCIEEEEKEEISGIHSEKLALAFALI 810 (868)
Q Consensus 738 ~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~ 810 (868)
|||||||+++++|.|++||++||++++||.+|+ +.||+ ||++.++|+ +||+||..|++||||||||||||
T Consensus 726 ~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~--~~~~~~~~~-~~~~k~~~~~~hse~la~a~~l~ 802 (857)
T PLN03077 726 PGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLA--GSESSSMDE-IEVSKDDIFCGHSERLAIAFGLI 802 (857)
T ss_pred CCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcC--CCcchhccc-cHHHHHHHHHhccHHHHHHHhhh
Confidence 999999999999999999999999999999988 78999 999999954 88999999999999999999999
Q ss_pred cCCCCCCcEEEecccccCCcchhhhHHHHhhhceEEEEecCCcccccCCCccCCCC
Q 047992 811 GSSQAPHTIRIVKNIRMCVHCHETAKYVSMMHHCEIFLADSKCLHHFKNGQCSCGD 866 (868)
Q Consensus 811 ~~~~~~~~~~~~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 866 (868)
+||||+ ||||+||||||+|||+++||||||++|||||||++|||||+||+|||||
T Consensus 803 ~~~~~~-~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 803 NTVPGM-PIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred cCCCCC-eEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999 9999999999999999999999999999999999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.8e-133 Score=1172.02 Aligned_cols=606 Identities=32% Similarity=0.546 Sum_probs=560.7
Q ss_pred CCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCC-CCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHH
Q 047992 119 ERNLYTWSAMIGAYSRDQRWREVVELFFLMVQDG-LFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNS 197 (868)
Q Consensus 119 ~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 197 (868)
.++..+|+++|.+|.+.|++++|+++|+.|...+ +.||..||+.++++|++.++++.+.++|..+.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4678899999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHH
Q 047992 198 VLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVA 277 (868)
Q Consensus 198 li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 277 (868)
|+++|+++|+++.|.++|++|+++|.++||++|.+|++.|++++|+++|++|.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~-------------------------- 217 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWE-------------------------- 217 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH--------------------------
Confidence 999999999999999999999999999999999999999999999999988886
Q ss_pred HHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHh
Q 047992 278 MEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKM 357 (868)
Q Consensus 278 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 357 (868)
.|+.||..||+.++.+|+..+..+.++++|..+.+.
T Consensus 218 --------------------------------------------~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~ 253 (697)
T PLN03081 218 --------------------------------------------DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKT 253 (697)
T ss_pred --------------------------------------------hCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 566778888888888888888889999999999999
Q ss_pred CCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHH
Q 047992 358 GFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLIS 437 (868)
Q Consensus 358 g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 437 (868)
|+.+|..++|+|+++|+++|++++|.++|+.|.++|+++||+||.+|++.|+.++|+++|++|
T Consensus 254 g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M----------------- 316 (697)
T PLN03081 254 GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM----------------- 316 (697)
T ss_pred CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHH-----------------
Confidence 999999999999999999999999999888887665555544444444444444444444444
Q ss_pred HHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchH
Q 047992 438 GYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASN 517 (868)
Q Consensus 438 ~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 517 (868)
...|+.||..||++++++|++.|.++
T Consensus 317 ------------------------------------------------------~~~g~~pd~~t~~~ll~a~~~~g~~~ 342 (697)
T PLN03081 317 ------------------------------------------------------RDSGVSIDQFTFSIMIRIFSRLALLE 342 (697)
T ss_pred ------------------------------------------------------HHcCCCCCHHHHHHHHHHHHhccchH
Confidence 44456666666666777777777777
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 047992 518 KVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGL 597 (868)
Q Consensus 518 ~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 597 (868)
.|+++|..+.+.|+.+|..++++|+++|+|||++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+
T Consensus 343 ~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~ 422 (697)
T PLN03081 343 HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGV 422 (697)
T ss_pred HHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 77777777777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 047992 598 KPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLT 677 (868)
Q Consensus 598 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~ 677 (868)
+||.+||++++++|++.|++++|+++|+.|.+++|+.|+..||+|||++|+|+|+++||.+++++||++|+..+|++|++
T Consensus 423 ~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~ 502 (697)
T PLN03081 423 APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLT 502 (697)
T ss_pred CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCCCcccEEEEcCEEEEEEeCCC
Q 047992 678 ACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRRNSFGQCWIEVKNLVYTFVTGGW 757 (868)
Q Consensus 678 a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~ 757 (868)
+|+.+|+++.|+.+++++++++|++.+.|+.|+|+|++.|+|++|.++++.|+++|++|.|||||||+++++|.|++||+
T Consensus 503 a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~ 582 (697)
T PLN03081 503 ACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDR 582 (697)
T ss_pred HHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHH-------hCCCccCCCCCCCCCCchhhhhhhhhhccchHHHHHHHhhcCCCCCCcEEEecccccCCc
Q 047992 758 SESYSDLLYSWLQ-------NVPENVTARSSHSGLCIEEEEKEEISGIHSEKLALAFALIGSSQAPHTIRIVKNIRMCVH 830 (868)
Q Consensus 758 ~hp~~~~i~~~l~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~~~~~~~~knlr~c~d 830 (868)
+||++++||.+|+ +.||+ ||+++++||++|++||+.|++||||||||||||+||||+ ||||+||||||+|
T Consensus 583 ~h~~~~~i~~~l~~l~~~~~~~gy~--~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~-~i~i~knlr~c~d 659 (697)
T PLN03081 583 LHPQSREIYQKLDELMKEISEYGYV--AEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWT-PLQITQSHRICKD 659 (697)
T ss_pred CCccHHHHHHHHHHHHHHHHHcCCC--CCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCC-eEEEecCCEECCC
Confidence 9999999999888 78999 999999999999999999999999999999999999999 9999999999999
Q ss_pred chhhhHHHHhhhceEEEEecCCcccccCCCccCCCCCC
Q 047992 831 CHETAKYVSMMHHCEIFLADSKCLHHFKNGQCSCGDYW 868 (868)
Q Consensus 831 ch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 868 (868)
||+|+|||||++||||||||++|||||+||+|||||||
T Consensus 660 ch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 660 CHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred chhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.2e-77 Score=715.57 Aligned_cols=690 Identities=21% Similarity=0.291 Sum_probs=590.2
Q ss_pred HHhhHHHHhccCCCCc--chHHHHHHHHhCCChhHHHHHHHHHhhcCCCCCcccHHHHHHHHhccCChHHHHHHHHHh-h
Q 047992 8 TFQQLHSLLTKKSNPR--FRDTHLDFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFL-N 84 (868)
Q Consensus 8 ~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~-~ 84 (868)
.+..+.++|...+.|+ .|+.++.+|++.|++++|+.+|++|...|+.|+..||..++++|+..+++..++++|..+ +
T Consensus 136 ~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~ 215 (857)
T PLN03077 136 ELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR 215 (857)
T ss_pred ChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHH
Confidence 4566788888888777 799999999999999999999999999999999999999999999999999999999999 9
Q ss_pred hcCCCChhhhhHHHHHHHhcCChhHHHHHHhhcCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHH
Q 047992 85 LVTEIDVFVKTKLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKIL 164 (868)
Q Consensus 85 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll 164 (868)
.|+.+|+.++|.||.+|+++|++++|+++|++|+.||+++||+||.+|++.|++++|+++|.+|.+.|+.||..||+++|
T Consensus 216 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll 295 (857)
T PLN03077 216 FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVI 295 (857)
T ss_pred cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHH
Q 047992 165 QACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHR 244 (868)
Q Consensus 165 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~ 244 (868)
++|++.|+++.|+++|..+.+.|+.||..++|+|+.+|+++|++++|.++|++|+.+|.++||+||.+|++.|++++|++
T Consensus 296 ~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~ 375 (857)
T PLN03077 296 SACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALE 375 (857)
T ss_pred HHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCc
Q 047992 245 LFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGV 324 (868)
Q Consensus 245 l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 324 (868)
+|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+||+||.+|++.|++++|.++|++|.+
T Consensus 376 lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--- 452 (857)
T PLN03077 376 TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE--- 452 (857)
T ss_pred HHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999852
Q ss_pred cCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcC---CCCeehHHHHH
Q 047992 325 MPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIK---DKDVYSWNSMI 401 (868)
Q Consensus 325 ~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~---~~~~~~~~~li 401 (868)
+|.. +||++|.+|++.|+.++|..+|++|. .||.++|++++
T Consensus 453 -~d~v-----------------------------------s~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL 496 (857)
T PLN03077 453 -KDVI-----------------------------------SWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAAL 496 (857)
T ss_pred -CCee-----------------------------------eHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHH
Confidence 4444 45555556666666666666666664 36777777888
Q ss_pred HHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCCh
Q 047992 402 AGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQK 481 (868)
Q Consensus 402 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 481 (868)
.+|++.|..+.+.+++..|.+.|+.+|..++|+||++|+++|++++|.++|+.+ .+|..+||+||.+|++.|+.
T Consensus 497 ~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~------~~d~~s~n~lI~~~~~~G~~ 570 (857)
T PLN03077 497 SACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH------EKDVVSWNILLTGYVAHGKG 570 (857)
T ss_pred HHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc------CCChhhHHHHHHHHHHcCCH
Confidence 888888888888888999999999999999999999999999999999999998 58999999999999999999
Q ss_pred hHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHH-HhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhc
Q 047992 482 NNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVL-RRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDG 560 (868)
Q Consensus 482 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 560 (868)
++|+++|++|.+.|+.||.+||.++|.+|++.|.+++|.+++..+. +.|+.|+..+|+.++++|+++|++++|.+++++
T Consensus 571 ~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 571 SMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 689999999999999999999999999999999
Q ss_pred CC-CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChh
Q 047992 561 MS-SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIE 638 (868)
Q Consensus 561 ~~-~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 638 (868)
|+ +||..+|++|+.+|..||+.+.|....+++.+ +.|+. .+|..+.+.|...|+++++.++.+.|++. |+.+++.
T Consensus 651 m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~-g~~k~~g 727 (857)
T PLN03077 651 MPITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN-GLTVDPG 727 (857)
T ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc-CCCCCCC
Confidence 96 79999999999999999999999999999988 78876 55666667899999999999999999884 7776543
Q ss_pred HHHHHH----HhhhhcC------------ChHHHHHHHHhCCCCCCHHHHHHHH-----HHHHhcCCHHHHHHHHHHHhc
Q 047992 639 HYSAMI----DLYGRSG------------KLEEAMEFIEDMPIEPDSSIWEALL-----TACRIHGNIDLAVLAIERLFD 697 (868)
Q Consensus 639 ~y~~lv----d~l~r~g------------~~~eA~~~i~~~~~~p~~~~w~~ll-----~a~~~~~~~~~a~~~~~~~~~ 697 (868)
....-+ ..+. +| .+++-..-+++....||...-...- .....| --.+| ++--++.
T Consensus 728 ~s~ie~~~~~~~f~-~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~k~~~~~~h-se~la--~a~~l~~ 803 (857)
T PLN03077 728 CSWVEVKGKVHAFL-TDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFCGH-SERLA--IAFGLIN 803 (857)
T ss_pred ccEEEECCEEEEEe-cCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccccHHHHHHHHHhc-cHHHH--HHHhhhc
Confidence 211000 0000 01 1122222223335667643100000 000001 00111 1112333
Q ss_pred cCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCCCcccEEEEcCEEEEEEeCCCCC
Q 047992 698 LEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRRNSFGQCWIEVKNLVYTFVTGGWSE 759 (868)
Q Consensus 698 l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~h 759 (868)
..|..+ +....-+--+|+...|.++......|.|- |.-.++.|.|..|-.|.
T Consensus 804 ~~~~~~---i~i~knlr~c~dch~~~k~~s~~~~r~i~-------~rd~~rfh~f~~g~csc 855 (857)
T PLN03077 804 TVPGMP---IWVTKNLYMCENCHNTVKFISKIVRREIS-------VRDTEQFHHFKDGECSC 855 (857)
T ss_pred CCCCCe---EEEeCCCEeCccHHHHHHHHHHHhCeEEE-------EecCCcceeCCCCcccC
Confidence 434321 22223345688899999988887766543 45567899998887664
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.4e-67 Score=619.56 Aligned_cols=533 Identities=18% Similarity=0.261 Sum_probs=430.4
Q ss_pred CCCChhhhhHHHHHHHhcCChhHHHHHHhhcCCCCceeH-----HHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHH
Q 047992 87 TEIDVFVKTKLLSVYAKCGCLDDAREVFEDMRERNLYTW-----SAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFP 161 (868)
Q Consensus 87 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~-----~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~ 161 (868)
..++...+..++..|+++|++++|.++|+.|++++.+.| +.++.+|.+.|..++|+.+|+.|.. ||..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 345667788888888899999999999999988776654 4566678899999999999998864 8999999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcC----CCChhhHHHHHHHHHhcC
Q 047992 162 KILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMD----EKDGVAWNSMISGYFQIG 237 (868)
Q Consensus 162 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~d~~~~~~li~~~~~~g 237 (868)
.+|++|++.|+++.|.++|+.|.+.|+.||..+||+||.+|+++|+++.|.++|++|. .+|.++||+||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999999999998888888888888888888888876 357778888888888888
Q ss_pred ChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHh--cCCCCCeeeHHHHHHHHHhcCChhHHHHH
Q 047992 238 ENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMES--LGITPDVFTWTCMISGFAQNGRTSQALDL 315 (868)
Q Consensus 238 ~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~l 315 (868)
++++|+++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8888888888888888888888888888888888888888888888765 56777777777777777777777777777
Q ss_pred HHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCee
Q 047992 316 FKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVY 395 (868)
Q Consensus 316 ~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~ 395 (868)
|++|.+.|+.|+..+|+.++.+|++.|+++.|..++..|.+.|+.||..+|+++
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsL-------------------------- 655 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSAL-------------------------- 655 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--------------------------
Confidence 777777777777777666666666666666666666666666666555555555
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHH
Q 047992 396 SWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGY 475 (868)
Q Consensus 396 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~ 475 (868)
|.+|++.|++++|.++|++|.+.|++||..+|++||.+|+++|++++|.++|++|.+.+ +.||..+|++||.+|
T Consensus 656 -----I~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g-~~PdvvtyN~LI~gy 729 (1060)
T PLN03218 656 -----VDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK-LRPTVSTMNALITAL 729 (1060)
T ss_pred -----HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH
Confidence 45555555566666677777888889999999999999999999999999999997654 788999999999999
Q ss_pred HhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHH----HHhcCCH
Q 047992 476 QQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDT----YAKSGNI 551 (868)
Q Consensus 476 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~----y~k~g~~ 551 (868)
++.|++++|+++|++|...|+.||..||.+++.+|++.|.++.|.++|..+.+.|+.||..+|++|+++ |.+|+++
T Consensus 730 ~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l 809 (1060)
T PLN03218 730 CEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACAL 809 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999987 5677777
Q ss_pred HHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhc
Q 047992 552 VYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECY 631 (868)
Q Consensus 552 ~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 631 (868)
.++...|+.+...+...|+. +|+.+|++|++.|+.||.+||..+|.++...+.++.+..+++.|.. -
T Consensus 810 ~~~v~~f~~g~~~~~n~w~~------------~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~-~ 876 (1060)
T PLN03218 810 GEPVVSFDSGRPQIENKWTS------------WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI-S 876 (1060)
T ss_pred hhhhhhhhccccccccchHH------------HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc-C
Confidence 77777777666666666764 5999999999999999999999999655566666555555554433 2
Q ss_pred CCCCChhHHHHHHHhhhhcCChHHHHHHHHhC---CCCCCHH
Q 047992 632 QIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM---PIEPDSS 670 (868)
Q Consensus 632 ~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~---~~~p~~~ 670 (868)
+..|+..+|+++++.+++. .++|..++++| .+.|+..
T Consensus 877 ~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 877 ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 4555677899999988542 47899999998 5666654
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-67 Score=619.21 Aligned_cols=503 Identities=28% Similarity=0.451 Sum_probs=454.8
Q ss_pred chHHHHHHHHhCCChhHHHHHHHHHhhcC-CCCCcccHHHHHHHHhccCChHHHHHHHHHh-hhcCCCChhhhhHHHHHH
Q 047992 24 FRDTHLDFLCGNGRLNEAITVLDSIATQG-AKVRRNTYINLLQACIDSNSIHLARKLHAFL-NLVTEIDVFVKTKLLSVY 101 (868)
Q Consensus 24 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~-~~~~~~~~~~~~~li~~~ 101 (868)
.|++++..+.+.|++.+|+.+|+.|...+ ..|+..+|..++.+|.+.++++.+.++|..+ +.|+.||..++|.|+++|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 68999999999999999999999998764 6789999999999999999999999999999 999999999999999999
Q ss_pred HhcCChhHHHHHHhhcCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHH
Q 047992 102 AKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHS 181 (868)
Q Consensus 102 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 181 (868)
+++|+++.|+++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++++|+..|..+.++++|.
T Consensus 169 ~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~ 248 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC 248 (697)
T ss_pred hcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhH
Q 047992 182 LVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTF 261 (868)
Q Consensus 182 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 261 (868)
.+.+.|+.+|..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+
T Consensus 249 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~---------- 318 (697)
T PLN03081 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD---------- 318 (697)
T ss_pred HHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhch
Q 047992 262 NILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDL 341 (868)
Q Consensus 262 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 341 (868)
.|+.||..||++++.+|++.
T Consensus 319 ------------------------------------------------------------~g~~pd~~t~~~ll~a~~~~ 338 (697)
T PLN03081 319 ------------------------------------------------------------SGVSIDQFTFSIMIRIFSRL 338 (697)
T ss_pred ------------------------------------------------------------cCCCCCHHHHHHHHHHHHhc
Confidence 45556666666777777777
Q ss_pred hhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhH
Q 047992 342 KALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQ 421 (868)
Q Consensus 342 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 421 (868)
|.++.|+++|..+.+.|+.+|..++|+|+++|+++|++++|.++|+.|.++|+++||+||.+|+++|+.++|+++|++|.
T Consensus 339 g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777777888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHH
Q 047992 422 ESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCV 501 (868)
Q Consensus 422 ~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 501 (868)
+.|+.||.+||++++.+|.+.|.+++|.++|+.|.+..++.|+..+|+.|+++|++.|+.++|.+++++| ++.|+..
T Consensus 419 ~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~ 495 (697)
T PLN03081 419 AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVN 495 (697)
T ss_pred HhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHH
Confidence 9999999999999999999999999999999999988889999999999999999999999999999987 5889999
Q ss_pred hHHHHHHHHhchhchHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-----ceecHHH---
Q 047992 502 TILSVLPACAYLVASNKVKEIHGCVLRRSLES-SLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKD-----IITWNSL--- 572 (868)
Q Consensus 502 t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d-----~~~~~~l--- 572 (868)
+|.+++.+|...|+++.|+.+...+.+ +.| +...|+.|+++|++.|++++|.++++.|.++. ..+|..+
T Consensus 496 ~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~ 573 (697)
T PLN03081 496 MWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQ 573 (697)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCe
Confidence 999999999999999999999888865 555 46688888888888888888888888887543 3455332
Q ss_pred ----HHHHHhcCC----hHHHHHHHHHHHHCCCCCCH
Q 047992 573 ----ICGYVLHGF----WHAALDLFDQMKSFGLKPNR 601 (868)
Q Consensus 573 ----i~~~~~~g~----~~~A~~l~~~m~~~g~~p~~ 601 (868)
+.+...|.+ ++...++..+|.+.|..||.
T Consensus 574 ~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~ 610 (697)
T PLN03081 574 DHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEE 610 (697)
T ss_pred EEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 222222222 23445667777777777774
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.1e-64 Score=592.80 Aligned_cols=532 Identities=18% Similarity=0.246 Sum_probs=471.4
Q ss_pred CCCcccHHHHHHHHhccCChHHHHHHHHHh-hhcC-CCChhhhhHHHHHHHhcCChhHHHHHHhhcCCCCceeHHHHHHH
Q 047992 54 KVRRNTYINLLQACIDSNSIHLARKLHAFL-NLVT-EIDVFVKTKLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGA 131 (868)
Q Consensus 54 ~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~-~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~ 131 (868)
.++...|..++..|++.|++..|.++++.| ..+. .++...++.++..|.+.|.+++|..+|+.|+.||..+||.+|.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 456677889999999999999999999999 7774 56777888999999999999999999999999999999999999
Q ss_pred HHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHH
Q 047992 132 YSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWA 211 (868)
Q Consensus 132 ~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 211 (868)
|++.|++++|.++|+.|.+.|+.||..+|+++|.+|++.|+++.|.++++.|.+.|+.||..+|+.||.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCC----CChhhHHHHHHHHHhcCChhHHHHHHHHHHH--cCCccChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047992 212 RRFFESMDE----KDGVAWNSMISGYFQIGENDEAHRLFDKMCR--EEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRME 285 (868)
Q Consensus 212 ~~~f~~~~~----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 285 (868)
.++|++|.. ||.++||.||.+|++.|++++|.++|++|.. .|+.||..+|++||.+|++.|++++|.++|+.|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999964 6999999999999999999999999999986 6899999999999999999999999999999999
Q ss_pred hcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccH
Q 047992 286 SLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLV 365 (868)
Q Consensus 286 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 365 (868)
+.|+.|+..+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.|+..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcC----CCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHh
Q 047992 366 GNSLINMYSKCEELEAAERVFDMIK----DKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQ 441 (868)
Q Consensus 366 ~~~li~~y~~~g~~~~A~~vf~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 441 (868)
|++||.+|+++|++++|.++|+.|. .||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999995 579999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcC--CCCCCHHhHHHHHHHHhchhchHHH
Q 047992 442 NGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSS--CFYPNCVTILSVLPACAYLVASNKV 519 (868)
Q Consensus 442 ~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~~ 519 (868)
.|++++|.++|+.|.+.+ +.||..+|++++..|.+ ++++|..+.+.+..- +...+.. +-.+.|
T Consensus 767 ~G~le~A~~l~~~M~k~G-i~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~g~~~~~n------------~w~~~A 831 (1060)
T PLN03218 767 KDDADVGLDLLSQAKEDG-IKPNLVMCRCITGLCLR--RFEKACALGEPVVSFDSGRPQIEN------------KWTSWA 831 (1060)
T ss_pred CCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhcccccccc------------chHHHH
Confidence 999999999999997665 78888888888865432 355555444333211 1111111 122457
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC----CCCceecHHHHHHHHhcCChHHHHHHHHHHHHC
Q 047992 520 KEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS----SKDIITWNSLICGYVLHGFWHAALDLFDQMKSF 595 (868)
Q Consensus 520 ~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 595 (868)
..++..|++.|+.||..+++.++.++.+.+..+.+..+++.|. .++..+||++|.++.+. .++|+.+|++|.+.
T Consensus 832 l~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~ 909 (1060)
T PLN03218 832 LMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASL 909 (1060)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHc
Confidence 7777777777777777777777777777777888888887664 35667888888877432 35788888888888
Q ss_pred CCCCCHH
Q 047992 596 GLKPNRG 602 (868)
Q Consensus 596 g~~p~~~ 602 (868)
|+.|+..
T Consensus 910 Gi~p~~~ 916 (1060)
T PLN03218 910 GVVPSVS 916 (1060)
T ss_pred CCCCCcc
Confidence 8888764
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.9e-37 Score=380.58 Aligned_cols=692 Identities=13% Similarity=0.090 Sum_probs=522.3
Q ss_pred chHHHHHHHHhCCChhHHHHHHHHHhhcCCCCCcccHHHHHHHHhccCChHHHHHHHHHhhhcCCCChhhhhHHHHHHHh
Q 047992 24 FRDTHLDFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFLNLVTEIDVFVKTKLLSVYAK 103 (868)
Q Consensus 24 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~li~~~~~ 103 (868)
.+..+...+...|++++|.+.++++.... +.+...+..+...+...|+.+.|...+..+....+.++.++..++..+..
T Consensus 161 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 239 (899)
T TIGR02917 161 AKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIE 239 (899)
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 45555555666666666666666555432 22333444444445555666666666665511223445555566666666
Q ss_pred cCChhHHHHHHhhcCC--C-CceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcc-hHHHHHHHhhCCCChHHHHHH
Q 047992 104 CGCLDDAREVFEDMRE--R-NLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDF-LFPKILQACGNCGDFEAGKLM 179 (868)
Q Consensus 104 ~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~ 179 (868)
.|+++.|...|+.+.+ | +...+......+...|++++|+..|+++.+.+ |+.. .+..+...+...|+++.|...
T Consensus 240 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~ 317 (899)
T TIGR02917 240 AGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA--PEYLPALLLAGASEYQLGNLEQAYQY 317 (899)
T ss_pred cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666665532 1 11222222233445666777777776665532 3322 222333445667888888888
Q ss_pred HHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcc
Q 047992 180 HSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEK---DGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKL 256 (868)
Q Consensus 180 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 256 (868)
+..+++.. +.+......+...+.+.|++++|...++.+... +...|+.+...+.+.|++++|.++|+++.+.. +.
T Consensus 318 ~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 395 (899)
T TIGR02917 318 LNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PE 395 (899)
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CC
Confidence 88877765 345566677788888888888888888876543 56678888888888999999999998887653 23
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHH
Q 047992 257 GVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAIS 336 (868)
Q Consensus 257 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 336 (868)
+...+..+...+...|+.++|.+.|+.+.+..+. +...+..++..+.+.|++++|+++++++.. ..+++..++..+..
T Consensus 396 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~ 473 (899)
T TIGR02917 396 NAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEK-KQPDNASLHNLLGA 473 (899)
T ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCCCcHHHHHHHH
Confidence 5567777888888889999999998888776544 345666778888899999999999988874 34556778888888
Q ss_pred HHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCC---CCeehHHHHHHHHHhcCChhHH
Q 047992 337 ACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKD---KDVYSWNSMIAGYCQAGYCGKA 413 (868)
Q Consensus 337 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~---~~~~~~~~li~~~~~~g~~~~A 413 (868)
.+...|+++.|.+.+..+++.. +.+...+..+...|...|++++|.+.|+.+.. .+..++..+...+.+.|+.++|
T Consensus 474 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 552 (899)
T TIGR02917 474 IYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEA 552 (899)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHH
Confidence 8999999999999999888764 34556777888899999999999999988764 3566788888999999999999
Q ss_pred HHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhc
Q 047992 414 YELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQS 493 (868)
Q Consensus 414 ~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 493 (868)
...|.++...+ +.+...+..+...|.+.|++++|..+++.+.+.. +.+...|..+...|.+.|++++|...|+++..
T Consensus 553 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 629 (899)
T TIGR02917 553 VAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA--PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629 (899)
T ss_pred HHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999988765 4456677888899999999999999999987654 56778899999999999999999999999875
Q ss_pred CCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCceecH
Q 047992 494 SCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSS---KDIITWN 570 (868)
Q Consensus 494 ~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~d~~~~~ 570 (868)
.. +.+...+..+...+...|+.+.+...+..+++. .+.+...+..++..+.+.|++++|.++++.+.. .+...|.
T Consensus 630 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 707 (899)
T TIGR02917 630 LQ-PDSALALLLLADAYAVMKNYAKAITSLKRALEL-KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFE 707 (899)
T ss_pred hC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHH
Confidence 42 234556677777888899999999999888873 233677888999999999999999999998763 4566788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhc
Q 047992 571 SLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRS 650 (868)
Q Consensus 571 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~ 650 (868)
.+...+...|++++|++.|+++.. ..|+..++..+..++.+.|+.++|.+.++.+.+. .+.+...+..+.++|.+.
T Consensus 708 ~~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~ 783 (899)
T TIGR02917 708 LEGDLYLRQKDYPAAIQAYRKALK--RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQ 783 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC
Confidence 888899999999999999999988 4566677888888999999999999999988874 344567788899999999
Q ss_pred CChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHH
Q 047992 651 GKLEEAMEFIEDM-P-IEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKL 728 (868)
Q Consensus 651 g~~~eA~~~i~~~-~-~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 728 (868)
|+.++|.+.++++ . .++++.++..+...+...|+ +.|...+++++++.|+++..+..++.+|...|++++|.+..+.
T Consensus 784 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 862 (899)
T TIGR02917 784 KDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRK 862 (899)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999987 2 33466789999999999999 7799999999999999999999999999999999999998887
Q ss_pred HHhcC
Q 047992 729 ERENT 733 (868)
Q Consensus 729 m~~~~ 733 (868)
+.+.+
T Consensus 863 a~~~~ 867 (899)
T TIGR02917 863 AVNIA 867 (899)
T ss_pred HHhhC
Confidence 76554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=9.4e-37 Score=376.05 Aligned_cols=692 Identities=12% Similarity=0.068 Sum_probs=582.1
Q ss_pred CCcchHHHHHHHHhCCChhHHHHHHHHHhhcCCCCCcccHHHHHHHHhccCChHHHHHHHHHh-hhcCCCChhhhhHHHH
Q 047992 21 NPRFRDTHLDFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFL-NLVTEIDVFVKTKLLS 99 (868)
Q Consensus 21 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~-~~~~~~~~~~~~~li~ 99 (868)
++..+..+...+...|++++|...|++...... .+...+..+...+...|+++.|...+..+ ... +.+.........
T Consensus 192 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 269 (899)
T TIGR02917 192 NVDALLLKGDLLLSLGNIELALAAYRKAIALRP-NNPAVLLALATILIEAGEFEEAEKHADALLKKA-PNSPLAHYLKAL 269 (899)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHH
Confidence 334678888899999999999999999987653 35566777777888899999999999988 443 334445555556
Q ss_pred HHHhcCChhHHHHHHhhcCCCC---ceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHH
Q 047992 100 VYAKCGCLDDAREVFEDMRERN---LYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAG 176 (868)
Q Consensus 100 ~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 176 (868)
.+...|+++.|...|+.+.+.+ ...+..+...+...|++++|...|+.+.... +.+...+..+...+...|+++.|
T Consensus 270 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A 348 (899)
T TIGR02917 270 VDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEA 348 (899)
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHH
Confidence 6778899999999999875432 2234455567788999999999999988752 33445667777888899999999
Q ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 047992 177 KLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDE---KDGVAWNSMISGYFQIGENDEAHRLFDKMCREE 253 (868)
Q Consensus 177 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 253 (868)
...+..+.+.. +.+..+++.+...|.+.|++++|...|+++.. .+...|..+...+...|++++|.+.|+.+....
T Consensus 349 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 427 (899)
T TIGR02917 349 IATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLD 427 (899)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC
Confidence 99999988765 35677888999999999999999999998754 356678889999999999999999999998765
Q ss_pred CccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHH
Q 047992 254 IKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITS 333 (868)
Q Consensus 254 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 333 (868)
.. .......++..|.+.|+.++|.++++.+....+ ++..+|+.+...+...|++++|.+.|+++.... +.+...+..
T Consensus 428 ~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 504 (899)
T TIGR02917 428 PE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQP-DNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAAN 504 (899)
T ss_pred Cc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHH
Confidence 32 334566788899999999999999999987643 477899999999999999999999999997532 334456677
Q ss_pred HHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCC---CCeehHHHHHHHHHhcCCh
Q 047992 334 AISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKD---KDVYSWNSMIAGYCQAGYC 410 (868)
Q Consensus 334 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~---~~~~~~~~li~~~~~~g~~ 410 (868)
+...+...|+++.+.+.+..+++.. +.+..++..+...|.+.|+.++|...|+.+.. .+...+..++..|.+.|++
T Consensus 505 la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 583 (899)
T TIGR02917 505 LARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQL 583 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCH
Confidence 7788889999999999999998875 44677889999999999999999999998854 3556788899999999999
Q ss_pred hHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHH
Q 047992 411 GKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRK 490 (868)
Q Consensus 411 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 490 (868)
++|..+++++.+.. +.+..+|..+...|.+.|++++|...|+.+.+.. +.+...|..+...+.+.|++++|...|++
T Consensus 584 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 660 (899)
T TIGR02917 584 KKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITSLKR 660 (899)
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999998754 4567789999999999999999999999997754 55677899999999999999999999999
Q ss_pred hhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCCcee
Q 047992 491 MQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS--SKDIIT 568 (868)
Q Consensus 491 m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~d~~~ 568 (868)
+... .+.+..++..+...+...|+.+.+..++..+.+.. +.+...+..+...|.+.|++++|.+.|+++. .|+..+
T Consensus 661 ~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 738 (899)
T TIGR02917 661 ALEL-KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQN 738 (899)
T ss_pred HHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchH
Confidence 8863 23346778888888999999999999999988754 4467788889999999999999999999875 355577
Q ss_pred cHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhh
Q 047992 569 WNSLICGYVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLY 647 (868)
Q Consensus 569 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l 647 (868)
+..++..+...|+.++|++.++++.+. .| +...+..+...|...|+.++|..+|+.+.+. .+++...+..+..++
T Consensus 739 ~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~ 814 (899)
T TIGR02917 739 AIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLY 814 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 888999999999999999999999984 44 4577888888899999999999999999874 345677899999999
Q ss_pred hhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHH
Q 047992 648 GRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKV 725 (868)
Q Consensus 648 ~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 725 (868)
...|+ ++|+++++++ ...| ++.+|..+..++...|+++.|...++++++++|.++..+..++.+|...|++++|.++
T Consensus 815 ~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 893 (899)
T TIGR02917 815 LELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKE 893 (899)
T ss_pred HhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999 8899999987 4444 4558888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 047992 726 RKLER 730 (868)
Q Consensus 726 ~~~m~ 730 (868)
.+.|.
T Consensus 894 ~~~~~ 898 (899)
T TIGR02917 894 LDKLL 898 (899)
T ss_pred HHHHh
Confidence 88875
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=100.00 E-value=1.9e-42 Score=297.56 Aligned_cols=106 Identities=43% Similarity=0.687 Sum_probs=98.7
Q ss_pred cccEEEEcCEEEEEEeCCCCCCchHHHHHHHHhCCCccCCCCCCCCCCchhhhh--------hhhhhccchHHHHHHHhh
Q 047992 739 GQCWIEVKNLVYTFVTGGWSESYSDLLYSWLQNVPENVTARSSHSGLCIEEEEK--------EEISGIHSEKLALAFALI 810 (868)
Q Consensus 739 g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~--------~~~~~~hse~la~~~~~~ 810 (868)
||||+++ |.|++||++||+...|+ .+...||. |+++.++||++++++ +..+++||||||||||||
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~~~~~-~~~~~~~~--~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAiafgli 74 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQSELIN-KMKEEGYV--PDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAIAFGLI 74 (116)
T ss_pred CCCccce----EEEEeCCCcCccHHHHH-HHHHcCCc--chhhhhCCCchhhhhhhcccccchhhhhccHHHHHHHhccc
Confidence 8999998 99999999999994444 55678999 999999999998877 679999999999999999
Q ss_pred cCCCCCCcEEEeccc-ccCCcchhhhHHHHhhhceEEEEecCCcccccC
Q 047992 811 GSSQAPHTIRIVKNI-RMCVHCHETAKYVSMMHHCEIFLADSKCLHHFK 858 (868)
Q Consensus 811 ~~~~~~~~~~~~knl-r~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~ 858 (868)
+| ||+||+ |||+|||+|+|+||+++||+|||||++||||||
T Consensus 75 ~~-------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 75 NT-------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred ce-------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 87 999999 999999999999999999999999999999997
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=1.9e-24 Score=266.79 Aligned_cols=627 Identities=11% Similarity=0.047 Sum_probs=348.6
Q ss_pred HhccCChHHHHHHHHHhhhcCCCChhhhhHHHHHHHhcCChhHHHHHHhhcCC--CCce-----------------eHHH
Q 047992 67 CIDSNSIHLARKLHAFLNLVTEIDVFVKTKLLSVYAKCGCLDDAREVFEDMRE--RNLY-----------------TWSA 127 (868)
Q Consensus 67 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~-----------------~~~~ 127 (868)
+...++.+.|++.+.++..--+.++.+...++..+.+.|+.++|.+.+++..+ |+.. .+..
T Consensus 38 ~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~ 117 (1157)
T PRK11447 38 GEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQ 117 (1157)
T ss_pred HHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHH
Confidence 33444555555555544222233444445555555555555555555554432 2111 0122
Q ss_pred HHHHHHhCCChhHHHHHHHHhHHCCCCCCcc-hHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcC
Q 047992 128 MIGAYSRDQRWREVVELFFLMVQDGLFPDDF-LFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCG 206 (868)
Q Consensus 128 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 206 (868)
+...+...|++++|+..|+.+.... +|+.. ............++.++|...++.+++.. +.+..+...+...+...|
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g 195 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSG 195 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccC
Confidence 2334556666666666666665432 22221 11111111223466666666666666654 234455566666666667
Q ss_pred ChHHHHHHHhhcCCCCh-----------------------hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHH
Q 047992 207 KLIWARRFFESMDEKDG-----------------------VAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNI 263 (868)
Q Consensus 207 ~~~~A~~~f~~~~~~d~-----------------------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ 263 (868)
+.++|...|+++..... ..+...+..+-.......|...+.++......|+... ..
T Consensus 196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~ 274 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RA 274 (1157)
T ss_pred CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HH
Confidence 77777776666543211 1111122222222233455555555443332333221 23
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcc---cHHHHHHHHhc
Q 047992 264 LIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGV---TITSAISACTD 340 (868)
Q Consensus 264 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~---t~~~ll~a~~~ 340 (868)
....+...|++++|+..|++..+..+. +...+..+...+.+.|++++|+..|++..+.. |+.. .+..++...
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~-- 349 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVN-- 349 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhh--
Confidence 345666788888888888888776544 66778888888888888888888888876533 3221 111111000
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCC---CCeehHHHHHHHHHhcCChhHHHHHH
Q 047992 341 LKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKD---KDVYSWNSMIAGYCQAGYCGKAYELF 417 (868)
Q Consensus 341 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 417 (868)
.......+...+.+.|++++|...|++... .+...+..+...+...|++++|++.|
T Consensus 350 ---------------------~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y 408 (1157)
T PRK11447 350 ---------------------RYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYY 408 (1157)
T ss_pred ---------------------hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 000011122334444455555555444432 12233444444455555555555555
Q ss_pred HHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCC-------CCCeeehhhhHHHHHhcCChhHHHHHHHH
Q 047992 418 IKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKV-------KRNTASWNSLIAGYQQLGQKNNALGVFRK 490 (868)
Q Consensus 418 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 490 (868)
++..+.. +.+...+..+...|. .++.++|..+++.+...... ......+..+...+...|++++|++.|++
T Consensus 409 ~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~ 486 (1157)
T PRK11447 409 QQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQ 486 (1157)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5544332 112223333333332 23445555544443221100 00012234445555556666666666665
Q ss_pred hhcCCCCCC-HHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC----
Q 047992 491 MQSSCFYPN-CVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKD---- 565 (868)
Q Consensus 491 m~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d---- 565 (868)
..+ ..|+ ...+..+...+...|+.+.|...+..+++.. +.++....++...+.+.|+.++|...++.++...
T Consensus 487 Al~--~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~ 563 (1157)
T PRK11447 487 RLA--LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSN 563 (1157)
T ss_pred HHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChh
Confidence 543 2333 2233344445555566666666666555421 2244445555556677888888888888775321
Q ss_pred c---------eecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC
Q 047992 566 I---------ITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM 636 (868)
Q Consensus 566 ~---------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 636 (868)
. ..+..++..+...|+.++|+++++. ..++...+..+...+...|+.++|+..|+...+.. +.+
T Consensus 564 ~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--P~~ 636 (1157)
T PRK11447 564 IQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--PGN 636 (1157)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC
Confidence 1 0122345677888999999998872 23344566677778889999999999999888732 234
Q ss_pred hhHHHHHHHhhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCch------hHHH
Q 047992 637 IEHYSAMIDLYGRSGKLEEAMEFIEDMP-IEPD-SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVL------IQRL 708 (868)
Q Consensus 637 ~~~y~~lvd~l~r~g~~~eA~~~i~~~~-~~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~------~~~~ 708 (868)
...+..++.+|...|++++|++.+++.+ ..|+ ..++..+..++...|+.+.|...++++++..|+++. .+..
T Consensus 637 ~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~ 716 (1157)
T PRK11447 637 ADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRD 716 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHH
Confidence 5678888899999999999999999873 4454 447777888888899999999999999998876653 5566
Q ss_pred HHHHHhhcCCChhHHHH-HHHHHhcCC
Q 047992 709 ILQIYAICGKPEDALKV-RKLERENTR 734 (868)
Q Consensus 709 l~~~y~~~g~~~~a~~~-~~~m~~~~~ 734 (868)
++.+|...|++++|... ++.|...|+
T Consensus 717 ~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 717 AARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 79999999999999996 555555555
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=1.7e-22 Score=249.64 Aligned_cols=638 Identities=12% Similarity=0.069 Sum_probs=446.4
Q ss_pred hHHHHHHHHhCCChhHHHHHHHHHhhcCCCCCcccHHHHHHHHhccCChHHHHHHHHHh-hhcCCCChhh----------
Q 047992 25 RDTHLDFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFL-NLVTEIDVFV---------- 93 (868)
Q Consensus 25 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~-~~~~~~~~~~---------- 93 (868)
.-..++.....++.+.|.+.++++..... .++..+....+.+.+.|+.+.|.+..+.+ ...+ .+...
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p-~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P-~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDP-NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAP-DSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHhc
Confidence 34556778888999999999998876542 25667777788888899999999998888 4443 23222
Q ss_pred ------hhHHHHHHHhcCChhHHHHHHhhcCCC--CceeHH--HHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHH
Q 047992 94 ------KTKLLSVYAKCGCLDDAREVFEDMRER--NLYTWS--AMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKI 163 (868)
Q Consensus 94 ------~~~li~~~~~~g~~~~A~~~f~~~~~~--~~~~~~--~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~l 163 (868)
...+...+.+.|++++|...|+...+. +..... .........|+.++|+..|+++.+.. +-+......+
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~L 187 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTL 187 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 133445788899999999999987643 222111 11111224588999999999988752 2234456666
Q ss_pred HHHhhCCCChHHHHHHHHHHHHhCCCCC----------------cc---hHHHHHHHHHHcCChHHHHHHHhhcCCC--C
Q 047992 164 LQACGNCGDFEAGKLMHSLVIKLGMSCV----------------RR---VRNSVLAVYVKCGKLIWARRFFESMDEK--D 222 (868)
Q Consensus 164 l~~~~~~~~~~~a~~~~~~~~~~g~~~~----------------~~---~~~~li~~y~~~g~~~~A~~~f~~~~~~--d 222 (868)
-..+...|+.++|...+..+.+...... .. .+...+..+-.......|...++..... |
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 7778888999999999988866431100 00 0111111111112234455555443221 1
Q ss_pred hh-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-eeeHHHH-
Q 047992 223 GV-AWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPD-VFTWTCM- 299 (868)
Q Consensus 223 ~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l- 299 (868)
.. ........+...|++++|+..|++..+.. +.+...+..|...|.+.|+.++|+..|++..+..+... ...|..+
T Consensus 268 p~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 268 PAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred cchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 11 11233566778999999999999998753 23678889999999999999999999999987654322 1223222
Q ss_pred -----------HHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHH
Q 047992 300 -----------ISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNS 368 (868)
Q Consensus 300 -----------i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 368 (868)
...+.+.|++++|+..|++..... +.+...+..+...+...|+++.|.+.+..+++.. +.+...+..
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~ 424 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRG 424 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 345678999999999999997643 2344566677788889999999999999998864 334455666
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCCCC------------eehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHH
Q 047992 369 LINMYSKCEELEAAERVFDMIKDKD------------VYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLI 436 (868)
Q Consensus 369 li~~y~~~g~~~~A~~vf~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 436 (868)
+...|. .++.++|...++.+.... ...+..+...+...|++++|++.|++..+.. +-+...+..+.
T Consensus 425 L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA 502 (1157)
T PRK11447 425 LANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLA 502 (1157)
T ss_pred HHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 777775 457899999888776421 1234556677888999999999999988764 22445566788
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhch
Q 047992 437 SGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVAS 516 (868)
Q Consensus 437 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 516 (868)
..|.+.|++++|...|+++.+.. +.+...+..+...+...++.++|+..++.+......++...+..-
T Consensus 503 ~~~~~~G~~~~A~~~l~~al~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~---------- 570 (1157)
T PRK11447 503 QDLRQAGQRSQADALMRRLAQQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQR---------- 570 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHH----------
Confidence 88999999999999999887654 345555555666677889999999998887543222211111000
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 047992 517 NKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFG 596 (868)
Q Consensus 517 ~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 596 (868)
+ .......+.+.|...|+.++|.++++. .+.+...+..+...|.+.|+.++|++.|++..+
T Consensus 571 ---------l-------~~~~~l~~a~~l~~~G~~~eA~~~l~~-~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~-- 631 (1157)
T PRK11447 571 ---------L-------QSDQVLETANRLRDSGKEAEAEALLRQ-QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT-- 631 (1157)
T ss_pred ---------H-------hhhHHHHHHHHHHHCCCHHHHHHHHHh-CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 0 001123456778899999999999984 345666778889999999999999999999998
Q ss_pred CCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhC-CCC---C---
Q 047992 597 LKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIE---P--- 667 (868)
Q Consensus 597 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~---p--- 667 (868)
..|+. ..+..+...+...|+.++|++.++...+. .| +...+..+..++.+.|++++|.++++++ +.. |
T Consensus 632 ~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~---~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 708 (1157)
T PRK11447 632 REPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT---ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSM 708 (1157)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc---CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcch
Confidence 56754 78888889999999999999999987653 33 3445677888899999999999999987 222 2
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc---cCCCCch
Q 047992 668 -DSSIWEALLTACRIHGNIDLAVLAIERLFD---LEPGDVL 704 (868)
Q Consensus 668 -~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~---l~p~~~~ 704 (868)
+..++..+...+...|+.+.|...+++++. +.|..++
T Consensus 709 ~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~~p~ 749 (1157)
T PRK11447 709 ESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPTRPQ 749 (1157)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCCCC
Confidence 234666777888999999999999999985 4454444
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=2e-21 Score=228.64 Aligned_cols=646 Identities=11% Similarity=-0.017 Sum_probs=418.7
Q ss_pred HhCCChhHHHHHHHHHhhcCCCCCcccHHHHHHHHhccCChHHHHHHHHHhhhcCCCChhhhhHHHHHHHhcCChhHHHH
Q 047992 33 CGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFLNLVTEIDVFVKTKLLSVYAKCGCLDDARE 112 (868)
Q Consensus 33 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 112 (868)
...|++.+|+..|++..+.... +..++..+.+.+...|+.+.|....+......+.|...+..|.. .++.+.|..
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~----i~~~~kA~~ 129 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAA----IPVEVKSVT 129 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHH----hccChhHHH
Confidence 3348888888888888776543 35667777788888888888888887773333345555444422 278888888
Q ss_pred HHhhcCC--CC-ceeHHHHHHH--------HHhCCChhHHHHHHHHhHHCCCCCCcchHHHH-HHHhhCCCChHHHHHHH
Q 047992 113 VFEDMRE--RN-LYTWSAMIGA--------YSRDQRWREVVELFFLMVQDGLFPDDFLFPKI-LQACGNCGDFEAGKLMH 180 (868)
Q Consensus 113 ~f~~~~~--~~-~~~~~~li~~--------~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~ 180 (868)
+++++.. |+ ...+..+... |.+.+...++++ .......|+..+.... .+.+...++++.+..++
T Consensus 130 ~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 130 TVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN----DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH----HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 8888753 32 2223223232 555544444443 3332333445544555 77788888888888888
Q ss_pred HHHHHhCCCCCcchHHHHHHHHHH-cCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCc-cCh
Q 047992 181 SLVIKLGMSCVRRVRNSVLAVYVK-CGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIK-LGV 258 (868)
Q Consensus 181 ~~~~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~ 258 (868)
..+.+.+. .+......|..+|.. .++ +.|..++......|...+..+...|.+.|+.++|.++++++...-.. |..
T Consensus 206 ~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~ 283 (987)
T PRK09782 206 NEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE 283 (987)
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence 88888874 334445666667777 366 77777777655567888888888888888888888888887654322 444
Q ss_pred hhHHHHHHHHHhcCChH-HHHHHHHHHHhcCCCCCe-eeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHH
Q 047992 259 VTFNILIRSYNQLGQCD-VAMEMVKRMESLGITPDV-FTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAIS 336 (868)
Q Consensus 259 ~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 336 (868)
.+|--+ ..+.+... .|..-|.+ + ..++. ...-.++..+.++++++.+.++. ...|.......-..
T Consensus 284 ~~~~~~---l~r~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~r~~ 350 (987)
T PRK09782 284 KSWLYL---LSKYSANPVQALANYTV--Q--FADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEMLEERYA 350 (987)
T ss_pred HHHHHH---HHhccCchhhhccchhh--h--hHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchHHHHHHh
Confidence 333333 33333332 11111111 0 00010 11122356677777777666552 23344333211111
Q ss_pred HHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCC-C-C----eehHHHHHHHHHhcCC-
Q 047992 337 ACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKD-K-D----VYSWNSMIAGYCQAGY- 409 (868)
Q Consensus 337 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~-~-~----~~~~~~li~~~~~~g~- 409 (868)
+....+...++.+.+..+.+.. +.+....--+.-...+.|+.++|.++|+.... + + ...-+-++..|.+.+.
T Consensus 351 ~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 429 (987)
T PRK09782 351 VSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYL 429 (987)
T ss_pred hccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcc
Confidence 2223355556666666665542 22444444455556677888888888887665 2 1 1233456677777766
Q ss_pred --hhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHH---HHHHHHhcccCCCCCC--CeeehhhhHHHHHhcCChh
Q 047992 410 --CGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDE---AVDLFQRMGKNDKVKR--NTASWNSLIAGYQQLGQKN 482 (868)
Q Consensus 410 --~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~---A~~~f~~m~~~~~~~~--~~~~~~~li~~~~~~g~~~ 482 (868)
..++..+-..+-. .+- +.-.|+..+ +...+....... ++ +...|..+..++.. ++++
T Consensus 430 ~~~~~~~~l~~~~~~-------~~~------~~~~~~~~~~~~~~~~~~~al~~~--p~~~~~~a~~~LG~~l~~-~~~~ 493 (987)
T PRK09782 430 ATPAKVAILSKPLPL-------AEQ------RQWQSQLPGIADNCPAIVRLLGDM--SPSYDAAAWNRLAKCYRD-TLPG 493 (987)
T ss_pred cchHHHHHhcccccc-------chh------HHHHhhhhhhhhhHHHHHHhcccC--CCCCCHHHHHHHHHHHHh-CCcH
Confidence 3333333322221 111 111222222 233333332221 34 56677777777776 7888
Q ss_pred HHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 047992 483 NALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS 562 (868)
Q Consensus 483 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~ 562 (868)
+|+..+.+... ..|+......+..+....|+.+.+...+..+.. .+++...+..+...+.+.|+.++|.+.|++..
T Consensus 494 eAi~a~~~Al~--~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~--~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL 569 (987)
T PRK09782 494 VALYAWLQAEQ--RQPDAWQHRAVAYQAYQVEDYATALAAWQKISL--HDMSNEDLLAAANTAQAAGNGAARDRWLQQAE 569 (987)
T ss_pred HHHHHHHHHHH--hCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88887777654 346655444444455678888888888887655 34444556677888899999999999998876
Q ss_pred CCCceecHHHHHHH---HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCC-Chh
Q 047992 563 SKDIITWNSLICGY---VLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIP-MIE 638 (868)
Q Consensus 563 ~~d~~~~~~li~~~---~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~ 638 (868)
..++..++...... ...|++++|+..|++..+ ..|+...+..+..++.+.|+.++|...|+..... .| +..
T Consensus 570 ~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l---~Pd~~~ 644 (987)
T PRK09782 570 QRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALEL---EPNNSN 644 (987)
T ss_pred hcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHH
Confidence 55444444433323 344999999999999998 6788888888899999999999999999998873 44 356
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 047992 639 HYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAIC 716 (868)
Q Consensus 639 ~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 716 (868)
.+..+..+|...|++++|++.+++. ...|+ +.+|..+..++...|+++.|+..++++++++|+++......+++....
T Consensus 645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~ 724 (987)
T PRK09782 645 YQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQR 724 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHH
Confidence 7788888999999999999999987 55564 558999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHH
Q 047992 717 GKPEDALKVRKL 728 (868)
Q Consensus 717 g~~~~a~~~~~~ 728 (868)
.+++.|.+-.+.
T Consensus 725 ~~~~~a~~~~~r 736 (987)
T PRK09782 725 FNFRRLHEEVGR 736 (987)
T ss_pred HHHHHHHHHHHH
Confidence 999999886553
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=3.2e-21 Score=226.89 Aligned_cols=597 Identities=12% Similarity=0.036 Sum_probs=402.8
Q ss_pred HhcCChhHHHHHHhhcCC--C-CceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHHH
Q 047992 102 AKCGCLDDAREVFEDMRE--R-NLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKL 178 (868)
Q Consensus 102 ~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 178 (868)
...|++++|...|+...+ | +..++..|...|.+.|++++|+..+++..+. .|+...|..++... ++...+..
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHH
Confidence 344888888888887643 3 3456777888888888888888888887764 55555555544322 77778888
Q ss_pred HHHHHHHhCCCCCcchHHHHHHH--------HHHcCChHHHHHHHhhcCCC--Chh-hHHHHHHHHHhcCChhHHHHHHH
Q 047992 179 MHSLVIKLGMSCVRRVRNSVLAV--------YVKCGKLIWARRFFESMDEK--DGV-AWNSMISGYFQIGENDEAHRLFD 247 (868)
Q Consensus 179 ~~~~~~~~g~~~~~~~~~~li~~--------y~~~g~~~~A~~~f~~~~~~--d~~-~~~~li~~~~~~g~~~~A~~l~~ 247 (868)
+++.+++... .+..++..+... |.+.+....++. .....+ +.. ..-.....|.+.+++++|++++.
T Consensus 130 ~ye~l~~~~P-~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 130 TVEELLAQQK-ACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHHhCC-CChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 8888887763 344455555554 777777677776 333333 333 34444889999999999999999
Q ss_pred HHHHcCCccChhhHHHHHHHHHh-cCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCcc-
Q 047992 248 KMCREEIKLGVVTFNILIRSYNQ-LGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVM- 325 (868)
Q Consensus 248 ~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~- 325 (868)
++.+.+.. +..-...|...|.. .++ +++..+++. .++-+...+..+...|.+.|+.++|.++++++...-..
T Consensus 207 ~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 207 EARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 99988633 34456666677877 466 777777554 23348888999999999999999999999998654333
Q ss_pred CCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHH
Q 047992 326 PNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDD-VLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGY 404 (868)
Q Consensus 326 pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~ 404 (868)
|+..++.-.+.-..... ..+..-+ .+ .+.++ ....-.+++.+.+.+..+.+.++.+ ....+.. .-.-..+.
T Consensus 281 ~~~~~~~~~l~r~~~~~--~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~r~~~~ 352 (987)
T PRK09782 281 AQEKSWLYLLSKYSANP--VQALANY---TV-QFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANEM-LEERYAVS 352 (987)
T ss_pred CccHHHHHHHHhccCch--hhhccch---hh-hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcchH-HHHHHhhc
Confidence 55555544433322221 1111100 00 01111 1233445788888888888877744 2222221 11111222
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccC-CCCCCCeeehhhhHHHHHhcCC---
Q 047992 405 CQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKN-DKVKRNTASWNSLIAGYQQLGQ--- 480 (868)
Q Consensus 405 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~-~~~~~~~~~~~~li~~~~~~g~--- 480 (868)
...+...++...+..|.+.. +-+....-.+.-...+.|+.++|.++|+..... .....+...-+-++..|.+.+.
T Consensus 353 ~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 431 (987)
T PRK09782 353 VATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLAT 431 (987)
T ss_pred cccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccc
Confidence 34466777777777776542 113344444444567788899999998887652 2122233334466777777666
Q ss_pred hhHHHHH-------------------------HHHhhcCCCCCC--HHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCC
Q 047992 481 KNNALGV-------------------------FRKMQSSCFYPN--CVTILSVLPACAYLVASNKVKEIHGCVLRRSLES 533 (868)
Q Consensus 481 ~~~A~~~-------------------------~~~m~~~g~~p~--~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~ 533 (868)
..+|+.+ +.... +..|+ .......+..|...+....|...+..... ..|
T Consensus 432 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al--~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~--~~P 507 (987)
T PRK09782 432 PAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLL--GDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQ--RQP 507 (987)
T ss_pred hHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhc--ccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHH--hCC
Confidence 3344333 11111 22233 22222333344444777778887777666 335
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMSS--KDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRG-TFLSIILA 610 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a 610 (868)
+......+...+.+.|++++|...|+++.. ++...|..+...+.+.|+.++|+..|++.++. .|+.. .+..+...
T Consensus 508 d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~ 585 (987)
T PRK09782 508 DAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQ 585 (987)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHH
Confidence 544444455666799999999999997653 44556777888899999999999999999984 46553 33344445
Q ss_pred hhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHH
Q 047992 611 HSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSS-IWEALLTACRIHGNIDLA 688 (868)
Q Consensus 611 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~~~~~~a 688 (868)
....|+.++|...|+...+ +.|+...|..+..++.+.|+.++|++.+++. ...|+.. .+..+..++...|+.+.|
T Consensus 586 l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 6677999999999999876 5677888999999999999999999999998 5667655 778888899999999999
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 689 VLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 689 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
+..++++++++|+++.++..|+.+|...|+.++|....+...
T Consensus 663 i~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 663 REMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999766553
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=1.9e-19 Score=186.83 Aligned_cols=443 Identities=16% Similarity=0.148 Sum_probs=297.9
Q ss_pred HHHHHHHHHcCChHHHHHHHhhcCCCChh---hHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcC
Q 047992 196 NSVLAVYVKCGKLIWARRFFESMDEKDGV---AWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLG 272 (868)
Q Consensus 196 ~~li~~y~~~g~~~~A~~~f~~~~~~d~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 272 (868)
..|.+-..+.|++.+|++.-...-+.|.. ..-.+-..+.+..+.+....--....+ ..+.-..+|..+.+.+-..|
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r-~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIR-KNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhh-ccchHHHHHHHHHHHHHHhc
Confidence 34444455556666665554444333211 111122334444444433322211111 11223345555666666666
Q ss_pred ChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHH
Q 047992 273 QCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHS 352 (868)
Q Consensus 273 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~ 352 (868)
++++|+.+++.+.+..++ .+..|..+..++...|+.+.|.+.|.+..+ +.|+...
T Consensus 131 ~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~c---------------------- 185 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYC---------------------- 185 (966)
T ss_pred hHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhh----------------------
Confidence 666666666666555433 455555566666666666666655555532 2233211
Q ss_pred HHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCC--C-CeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-
Q 047992 353 LAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKD--K-DVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPN- 428 (868)
Q Consensus 353 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~- 428 (868)
+.+-+.......|++++|...+....+ | -.+.|+.+...+..+|+...|+..|++.... .|+
T Consensus 186 ------------a~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f 251 (966)
T KOG4626|consen 186 ------------ARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNF 251 (966)
T ss_pred ------------hhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcc
Confidence 122233344456778888777765543 2 3567899988999999999999999988855 343
Q ss_pred eeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHH
Q 047992 429 VITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLP 508 (868)
Q Consensus 429 ~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 508 (868)
...|-.|...|...+.+++|+..+.+..... +...+.+..|...|-.+|..|-|+..+++..+ +.|+
T Consensus 252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr--pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~--------- 318 (966)
T KOG4626|consen 252 LDAYINLGNVYKEARIFDRAVSCYLRALNLR--PNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPN--------- 318 (966)
T ss_pred hHHHhhHHHHHHHHhcchHHHHHHHHHHhcC--CcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCC---------
Confidence 3467778888888889999998888876543 55667788888888889999999999888764 3443
Q ss_pred HHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHH
Q 047992 509 ACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAA 585 (868)
Q Consensus 509 a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A 585 (868)
-+..|+.|..++-..|++.+|.+.+++.. .....+.|.+...|...|..++|
T Consensus 319 -------------------------F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A 373 (966)
T KOG4626|consen 319 -------------------------FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEA 373 (966)
T ss_pred -------------------------chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHH
Confidence 23346666666666677777777776543 23445677777777777777788
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC
Q 047992 586 LDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM 663 (868)
Q Consensus 586 ~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~ 663 (868)
..+|....+ +.|.- ..++.+.+.+-+.|.+++|+..++.... |.|+ .+.|+-|...|-..|+.++|.+.+.+.
T Consensus 374 ~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rA 448 (966)
T KOG4626|consen 374 TRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDVSAAIQCYTRA 448 (966)
T ss_pred HHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhHHHHHHHHHHH
Confidence 887777777 66765 5677777777778888888877776653 6776 347888888888889999999988887
Q ss_pred -CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChh
Q 047992 664 -PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPED 721 (868)
Q Consensus 664 -~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 721 (868)
.+.|.-. ..+.|.+.++-.||++.|...++.+++++|+.+.+|..|.-.+.-.-.|.+
T Consensus 449 I~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 449 IQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 6777655 888999999999999999999999999999999999999988888888887
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.82 E-value=5.6e-15 Score=162.58 Aligned_cols=557 Identities=13% Similarity=0.097 Sum_probs=328.6
Q ss_pred hhHHHHHHHHhHHCCCCCCcchHHHHHHHhh--CCCChHHHHHHHHHHHHhCC--CCCcchHHHHHHHHHHcCChHHHHH
Q 047992 138 WREVVELFFLMVQDGLFPDDFLFPKILQACG--NCGDFEAGKLMHSLVIKLGM--SCVRRVRNSVLAVYVKCGKLIWARR 213 (868)
Q Consensus 138 ~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~ 213 (868)
.+.|...|...... .|+. ....+.+||. ..+++..+..+|..++.... .+|+.+. +...+.++|+.+.|..
T Consensus 146 ~~~A~a~F~~Vl~~--sp~N-il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQ--SPDN-ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKALL 220 (1018)
T ss_pred HHHHHHHHHHHHhh--CCcc-hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHHH
Confidence 46777777776653 2322 2334556654 44577778888777666543 3444443 3456677788888888
Q ss_pred HHhhcCCCChhhHHHHHHHHH------hcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 047992 214 FFESMDEKDGVAWNSMISGYF------QIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESL 287 (868)
Q Consensus 214 ~f~~~~~~d~~~~~~li~~~~------~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 287 (868)
.|.+..+-|+..-++++.... ....+..++.++...-..+ .-++.+.+.|.+.|.-.|+++.++.+...+...
T Consensus 221 a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 221 AFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 887777766554444443221 1123344455544443322 335667777777788888888888777777654
Q ss_pred CCC--CCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccH--HHHHHHHhchhhHHHHHHHHHHHHHhCCCCCc
Q 047992 288 GIT--PDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTI--TSAISACTDLKALAMGMEIHSLAVKMGFTDDV 363 (868)
Q Consensus 288 g~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~--~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~ 363 (868)
... .-..+|--+..+|-..|++++|...|.+.. +..||.+++ .-+...+...|+++.+...+..+.+.. +.+.
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~--k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~ 376 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL--KADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNY 376 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--ccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchH
Confidence 211 113346667777778888888888887764 334555433 345566777778888877777777663 3345
Q ss_pred cHHHHHHHHHHcCC----CHHHHHHHHHhcCCC---CeehHHHHHHHHHhcCChhHHHHHHHHh----HhCCCCCCeeeh
Q 047992 364 LVGNSLINMYSKCE----ELEAAERVFDMIKDK---DVYSWNSMIAGYCQAGYCGKAYELFIKM----QESDVPPNVITW 432 (868)
Q Consensus 364 ~~~~~li~~y~~~g----~~~~A~~vf~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~p~~~t~ 432 (868)
.+...|...|...+ ..+.|..+......+ |..+|-.+...+-+..-+. ++..|... ...+-.+.....
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~L 455 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVL 455 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHH
Confidence 55666666666554 455666666555543 3445555555554443333 25555433 234444556667
Q ss_pred hhHHHHHHhcCCHHHHHHHHHhcccCCC--CCCCe------eehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHH
Q 047992 433 NVLISGYIQNGNEDEAVDLFQRMGKNDK--VKRNT------ASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTIL 504 (868)
Q Consensus 433 ~~li~~~~~~g~~~~A~~~f~~m~~~~~--~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 504 (868)
|.+...+...|+++.|...|++....-. ..++. .+--.+...+-..++++.|.+.|+..... .|+-++--
T Consensus 456 NNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~y 533 (1018)
T KOG2002|consen 456 NNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAY 533 (1018)
T ss_pred HhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHH
Confidence 7777777788888888888877654410 11111 11223445556667777777777777642 34433211
Q ss_pred HHHHHH-hchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CCceecHHHHHHHHh
Q 047992 505 SVLPAC-AYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSS-----KDIITWNSLICGYVL 578 (868)
Q Consensus 505 ~ll~a~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~d~~~~~~li~~~~~ 578 (868)
.=+.+. ...+.+..+...+..++.- ...++.+++-+.+.|.+...+.-|.+-|..+.. +|..+.-+|...|.+
T Consensus 534 lRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~ 612 (1018)
T KOG2002|consen 534 LRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQ 612 (1018)
T ss_pred HHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHH
Confidence 111111 1123444455544444441 234666666677777777777777775554432 244444344443332
Q ss_pred ------------cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 047992 579 ------------HGFWHAALDLFDQMKSFGLKP-NRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMID 645 (868)
Q Consensus 579 ------------~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd 645 (868)
.+..++|+++|.+.++ ..| |...-+++...+++.|.+++|+.+|.+..+...-.+ ..|--+..
T Consensus 613 ~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~--dv~lNlah 688 (1018)
T KOG2002|consen 613 ALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFE--DVWLNLAH 688 (1018)
T ss_pred HhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCC--ceeeeHHH
Confidence 2345677777777777 455 335556666667778888888888887777433222 33566667
Q ss_pred hhhhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHH
Q 047992 646 LYGRSGKLEEAMEFIEDM----PIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQ 711 (868)
Q Consensus 646 ~l~r~g~~~eA~~~i~~~----~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 711 (868)
+|.-.|++-.|++.++.. --+.+..+.+-|..++...|.+.+|..++.+++.+.|.|+..-..++-
T Consensus 689 ~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 689 CYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 777778888888887765 122355577777777777777888888888888888877765544443
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.82 E-value=3.4e-15 Score=164.31 Aligned_cols=684 Identities=13% Similarity=0.076 Sum_probs=430.4
Q ss_pred chHHHHHHHHhCCChhHHHHHHHHHhhcC-C---CCCcc--cHHHHHHHHh-cc------CC-----hHHHHHHHHHh-h
Q 047992 24 FRDTHLDFLCGNGRLNEAITVLDSIATQG-A---KVRRN--TYINLLQACI-DS------NS-----IHLARKLHAFL-N 84 (868)
Q Consensus 24 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~---~~~~~--~~~~ll~~~~-~~------~~-----~~~a~~i~~~~-~ 84 (868)
+|...-..|++.|..++.+.+++.-.-.. . .+... .....+.++. .. .+ +..+...+... +
T Consensus 43 ~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~k 122 (1018)
T KOG2002|consen 43 AWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLADK 122 (1018)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHHH
Confidence 78999999999999999999987655111 0 01111 1111122221 00 00 11122222222 1
Q ss_pred hcCCCChhhhhHHHHHHHhcCC--hhHHHHHHhhcCCCCceeHHH-HHHHH--HhCCChhHHHHHHHHhHHC--CCCCCc
Q 047992 85 LVTEIDVFVKTKLLSVYAKCGC--LDDAREVFEDMRERNLYTWSA-MIGAY--SRDQRWREVVELFFLMVQD--GLFPDD 157 (868)
Q Consensus 85 ~~~~~~~~~~~~li~~~~~~g~--~~~A~~~f~~~~~~~~~~~~~-li~~~--~~~g~~~~a~~l~~~m~~~--g~~p~~ 157 (868)
-....+..++.. -..|...|+ +++|...|....+.+.----. +..+. ...+++..|+.+|...... ..+||.
T Consensus 123 i~m~~~~~l~~~-~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~ 201 (1018)
T KOG2002|consen 123 IDMYEDSHLLVQ-RGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADV 201 (1018)
T ss_pred hhccCcchhhhh-hhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCc
Confidence 111111111111 112233343 588988888875422211112 22232 3467999999999996542 445565
Q ss_pred chHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCC---hHHHHHHHhhcC---CCChhhHHHHHH
Q 047992 158 FLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGK---LIWARRFFESMD---EKDGVAWNSMIS 231 (868)
Q Consensus 158 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---~~~A~~~f~~~~---~~d~~~~~~li~ 231 (868)
.. .+-.++.+.++.+.|+..+.+++.... .++..+..|.-+-....+ +..+..++...- ..|++..+.|.+
T Consensus 202 rI--gig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn 278 (1018)
T KOG2002|consen 202 RI--GIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLAN 278 (1018)
T ss_pred cc--hhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence 32 122345788999999999999887653 222222222222222333 334444444322 348899999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCcc--ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCCh
Q 047992 232 GYFQIGENDEAHRLFDKMCREEIKL--GVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRT 309 (868)
Q Consensus 232 ~~~~~g~~~~A~~l~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 309 (868)
-|.-.|+++.+..+...+......- -...|--+.++|-..|++++|...|.+..+....--+..+--+...|.+.|++
T Consensus 279 ~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dl 358 (1018)
T KOG2002|consen 279 HFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDL 358 (1018)
T ss_pred HHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchH
Confidence 9999999999999999988653221 23457778899999999999999998887764332245556678889999999
Q ss_pred hHHHHHHHHHHhCCccCCcccHHHHHHHHhchh----hHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCC------H
Q 047992 310 SQALDLFKEMSFVGVMPNGVTITSAISACTDLK----ALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEE------L 379 (868)
Q Consensus 310 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~----~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~------~ 379 (868)
+.+...|+..... .+-+..|...+-..|+..+ ..+.+..+....++.- ..|...|-.+..+|-...- +
T Consensus 359 e~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~ 436 (1018)
T KOG2002|consen 359 EESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWASLDAY 436 (1018)
T ss_pred HHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHHHHHH
Confidence 9999999998643 3334456666666666554 4456666666666554 4456667767766655443 2
Q ss_pred HHHHHHHHhc-CCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhC---CCCCCee------ehhhHHHHHHhcCCHHHHH
Q 047992 380 EAAERVFDMI-KDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQES---DVPPNVI------TWNVLISGYIQNGNEDEAV 449 (868)
Q Consensus 380 ~~A~~vf~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~------t~~~li~~~~~~g~~~~A~ 449 (868)
..|..++..- ....+...|.+...+...|++++|...|.+.... -..+|.. +--.+...+-..++.+.|.
T Consensus 437 ~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~ 516 (1018)
T KOG2002|consen 437 GNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAE 516 (1018)
T ss_pred HHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHH
Confidence 3344333322 2346677899999999999999999999988755 2233432 1122344455677899999
Q ss_pred HHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhc-CCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHH
Q 047992 450 DLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQS-SCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLR 528 (868)
Q Consensus 450 ~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~ 528 (868)
+.+..+.+.. |.-+..|-.+...-...+...+|...+++... ..-.|+..++. -.-+........|..-+..+.+
T Consensus 517 e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~--G~~~l~k~~~~~a~k~f~~i~~ 592 (1018)
T KOG2002|consen 517 EMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLL--GNLHLKKSEWKPAKKKFETILK 592 (1018)
T ss_pred HHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHH--HHHHHhhhhhcccccHHHHHHh
Confidence 9999997764 22222333333222233567788888888654 23344444432 2244455556666665555555
Q ss_pred hCCC-CChhHHHHHHHHHH------------hcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHH
Q 047992 529 RSLE-SSLPVMNSLIDTYA------------KSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQM 592 (868)
Q Consensus 529 ~~~~-~~~~~~~~Li~~y~------------k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 592 (868)
.-.. +|+...-+|.+.|. ..+..+.|.+.|.+.. ++|..+=|.+...++..|++.+|..+|.+.
T Consensus 593 ~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqV 672 (1018)
T KOG2002|consen 593 KTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQV 672 (1018)
T ss_pred hhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHH
Confidence 3332 58888888888664 2356789999998665 567888899999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHH-
Q 047992 593 KSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSS- 670 (868)
Q Consensus 593 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~- 670 (868)
++... -+..+|+.+...|...|++-.|++.|+...+++.-.-+.+...||..++.++|.+.+|.+..... ...|...
T Consensus 673 rEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 673 REATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTS 751 (1018)
T ss_pred HHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccch
Confidence 98743 34568889999999999999999999999998887788889999999999999999999987766 3333322
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcC
Q 047992 671 IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENT 733 (868)
Q Consensus 671 ~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 733 (868)
+--.++ ....+.++.++...+. .+=.+....+..++|.++...|...+
T Consensus 752 v~FN~a---------~v~kkla~s~lr~~k~------t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 752 VKFNLA---------LVLKKLAESILRLEKR------TLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred HHhHHH---------HHHHHHHHHHHhcccc------cHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 111111 1223334444444441 12233444555566666666665443
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=1.1e-18 Score=192.48 Aligned_cols=310 Identities=13% Similarity=0.058 Sum_probs=187.5
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHH
Q 047992 269 NQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGM 348 (868)
Q Consensus 269 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 348 (868)
...|++++|...|.++.+.++. +..+|..+...+.+.|++++|+.+++.+...+..++..
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~------------------- 105 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ------------------- 105 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH-------------------
Confidence 3444455555555554444221 33455555556666666666666666554321111000
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCC
Q 047992 349 EIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKD---KDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDV 425 (868)
Q Consensus 349 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 425 (868)
...++..+...|.+.|++++|..+|+.+.+ .+..+++.++..+.+.|++++|++.++.+.+.+.
T Consensus 106 -------------~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 172 (389)
T PRK11788 106 -------------RLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG 172 (389)
T ss_pred -------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC
Confidence 012344556666666667777766666654 2445666677777777777777777777765542
Q ss_pred CCCe----eehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHH
Q 047992 426 PPNV----ITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCV 501 (868)
Q Consensus 426 ~p~~----~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 501 (868)
.++. ..+..+...+.+.|++++|...|+++.+.. +.+...+..+...|.+.|++++|.++|+++...+..+...
T Consensus 173 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 250 (389)
T PRK11788 173 DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSE 250 (389)
T ss_pred CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHH
Confidence 2211 123455566677777777777777776543 3344566667777777788888888777776532222234
Q ss_pred hHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCCceecHHHHHHHHh-
Q 047992 502 TILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS--SKDIITWNSLICGYVL- 578 (868)
Q Consensus 502 t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~d~~~~~~li~~~~~- 578 (868)
++..+..++...|+.+.+.+.+..+.+. .|+...+..++..|.+.|++++|.++|+++. .|+..+++.++..+..
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~ 328 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAE 328 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhc
Confidence 4555556666666666666666666553 3444555777788888888888888887654 3666677777766553
Q ss_pred --cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHH
Q 047992 579 --HGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGK 621 (868)
Q Consensus 579 --~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 621 (868)
+|+.++|+.+|++|.+.+++|+.. .+|+|.|.+.+-+
T Consensus 329 ~~~g~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~~~~~~ 367 (389)
T PRK11788 329 AEEGRAKESLLLLRDLVGEQLKRKPR------YRCRNCGFTARTL 367 (389)
T ss_pred cCCccchhHHHHHHHHHHHHHhCCCC------EECCCCCCCCccc
Confidence 557778888888888777777665 3477777654443
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.82 E-value=9.3e-18 Score=174.47 Aligned_cols=418 Identities=14% Similarity=0.144 Sum_probs=320.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcC
Q 047992 297 TCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKC 376 (868)
Q Consensus 297 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 376 (868)
..|..-..+.|++++|.+.-...-+. -+.+..+...+-..+.+..+++...+--...++.. +.-...|..+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~-d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQE-DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhcc-CCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence 34455556677777777765444222 11222222223333445555555444433333332 23345788899999999
Q ss_pred CCHHHHHHHHHhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehh-hHHHHHHhcCCHHHHHHHH
Q 047992 377 EELEAAERVFDMIKD---KDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWN-VLISGYIQNGNEDEAVDLF 452 (868)
Q Consensus 377 g~~~~A~~vf~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~li~~~~~~g~~~~A~~~f 452 (868)
|++++|...++.+.+ ..+..|..+..++...|+.+.|.+.|.+.++. .|+.+... -+.......|++.+|...+
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHH
Confidence 999999999998775 35678999999999999999999999998865 35444433 3444455689999999998
Q ss_pred HhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCH-HhHHHHHHHHhchhchHHHHHHHHHHHHhCC
Q 047992 453 QRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNC-VTILSVLPACAYLVASNKVKEIHGCVLRRSL 531 (868)
Q Consensus 453 ~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~ 531 (868)
.+..+.. +--.+.|+.|...+...|+...|+..|++... +.|+. ..|..+-..+...+.++.|...+..++. .
T Consensus 208 lkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--l 281 (966)
T KOG4626|consen 208 LKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--L 281 (966)
T ss_pred HHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--c
Confidence 8887654 44568999999999999999999999999874 56652 2333444444444455555554444444 5
Q ss_pred CC-ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHH
Q 047992 532 ES-SLPVMNSLIDTYAKSGNIVYSRTIFDGMSS---KDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLS 606 (868)
Q Consensus 532 ~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ 606 (868)
.| ...++..+.-.|-..|.++-|...+++..+ .-...||.|..++-..|+..+|.+.|.+.+. +.|+. ...+.
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~N 359 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNN 359 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHH
Confidence 55 456677788889999999999999998753 3457999999999999999999999999998 78887 68889
Q ss_pred HHHHhhccCChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcC
Q 047992 607 IILAHSLAGMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSS-IWEALLTACRIHG 683 (868)
Q Consensus 607 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~~ 683 (868)
+..++...|.+++|..+|....+ +.|. ....+-+..+|...|++++|..-+++. .++|+.. .++.+...+...|
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhh
Confidence 99999999999999999998776 4555 346788999999999999999999988 8899876 8999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 684 NIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 684 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
+++.|.+.+++++.++|.-+.++..|+.+|-.+|+..+|..-++.-
T Consensus 437 ~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~a 482 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTA 482 (966)
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999865433
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=6.5e-17 Score=187.90 Aligned_cols=422 Identities=13% Similarity=0.055 Sum_probs=238.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHh
Q 047992 226 WNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQ 305 (868)
Q Consensus 226 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 305 (868)
+......+.+.|++++|+..|++.... .|+...|..+..+|.+.|++++|++.++...+..+. +...|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 445566777888888888888887754 566777888888888888888888888888876443 56678888888889
Q ss_pred cCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHH
Q 047992 306 NGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERV 385 (868)
Q Consensus 306 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~v 385 (868)
.|++++|+..|......+- .+......++..... ..+........+.. +.+...+..+.+ |........+..-
T Consensus 207 lg~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~ 279 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAG 279 (615)
T ss_pred cCCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhh
Confidence 9999999888776643321 111111111111111 11111111111111 111111221111 1111110000000
Q ss_pred HHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-eeehhhHHHHH---HhcCCHHHHHHHHHhcccCCCC
Q 047992 386 FDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPN-VITWNVLISGY---IQNGNEDEAVDLFQRMGKNDKV 461 (868)
Q Consensus 386 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~---~~~g~~~~A~~~f~~m~~~~~~ 461 (868)
++...+. .|+ ...+..+...+ ...+++++|.+.|+...+.+..
T Consensus 280 ~~~~~~~---------------------------------~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~ 326 (615)
T TIGR00990 280 LEDSNEL---------------------------------DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKL 326 (615)
T ss_pred hhccccc---------------------------------ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCC
Confidence 1100000 000 00011110000 1234566666666665543221
Q ss_pred -CCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHH
Q 047992 462 -KRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNS 540 (868)
Q Consensus 462 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 540 (868)
+.....|+.+...+...|++++|+..|++.... .|+ +...+..
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~----------------------------------~~~~~~~ 370 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPR----------------------------------VTQSYIK 370 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC----------------------------------cHHHHHH
Confidence 223345556666666667777777766665532 222 1223344
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCC
Q 047992 541 LIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGM 616 (868)
Q Consensus 541 Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~ 616 (868)
+...|...|++++|...|++.. +.+...|..+...|...|++++|+..|++.++ +.|+. ..+..+..++...|+
T Consensus 371 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~ 448 (615)
T TIGR00990 371 RASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGS 448 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCC
Confidence 4555555666666666665432 33455666666667777777777777777766 45544 445555566667777
Q ss_pred hHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCH-------HHH-HHHHHHHHhcCCHHH
Q 047992 617 VDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDS-------SIW-EALLTACRIHGNIDL 687 (868)
Q Consensus 617 ~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~-------~~w-~~ll~a~~~~~~~~~ 687 (868)
.++|...|+...+.+. .+...|..+..++...|++++|++.+++. ...|+. ..| +..+..+...|+++.
T Consensus 449 ~~eA~~~~~~al~~~P--~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~e 526 (615)
T TIGR00990 449 IASSMATFRRCKKNFP--EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIE 526 (615)
T ss_pred HHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHH
Confidence 7777777777665322 22455666777777788888888877775 333321 111 112222334588888
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 688 AVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 688 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
|+..++++++++|++..++..|+.+|...|++++|.+..+...
T Consensus 527 A~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 527 AENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8888888888888888888888888988999888888766553
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.79 E-value=2e-17 Score=182.42 Aligned_cols=298 Identities=16% Similarity=0.140 Sum_probs=217.1
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCC--CeeehhhhHHHHHh
Q 047992 400 MIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKR--NTASWNSLIAGYQQ 477 (868)
Q Consensus 400 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~--~~~~~~~li~~~~~ 477 (868)
....+...|++++|+..|.++.+.+ +.+..++..+...|...|++++|..+++.+.......+ ....+..++..|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3445667788888888888888764 23445677778888888888888888888766431111 12456677777888
Q ss_pred cCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 047992 478 LGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTI 557 (868)
Q Consensus 478 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~ 557 (868)
.|++++|..+|+++.+. .| .+..+++.++.+|.+.|++++|.+.
T Consensus 120 ~g~~~~A~~~~~~~l~~--~~----------------------------------~~~~~~~~la~~~~~~g~~~~A~~~ 163 (389)
T PRK11788 120 AGLLDRAEELFLQLVDE--GD----------------------------------FAEGALQQLLEIYQQEKDWQKAIDV 163 (389)
T ss_pred CCCHHHHHHHHHHHHcC--Cc----------------------------------chHHHHHHHHHHHHHhchHHHHHHH
Confidence 88888888888877643 11 2344556667777777777777777
Q ss_pred HhcCCCCCc--------eecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhh
Q 047992 558 FDGMSSKDI--------ITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSIT 628 (868)
Q Consensus 558 f~~~~~~d~--------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 628 (868)
|+.+...+. ..|..++..+...|+.++|++.|+++.+ ..|+. ..+..+...+.+.|+.++|.++|+.+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 241 (389)
T PRK11788 164 AERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALA--ADPQCVRASILLGDLALAQGDYAAAIEALERVE 241 (389)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh--HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 776643211 1345566677788888888888888877 34543 466666677888888888888888877
Q ss_pred hhcCCCCC--hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh
Q 047992 629 ECYQIIPM--IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLI 705 (868)
Q Consensus 629 ~~~~~~p~--~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 705 (868)
+. .|+ ...+..++.+|.+.|++++|.+.++++ ...|+...+..+...+...|+++.|...++++++..|++...
T Consensus 242 ~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~ 318 (389)
T PRK11788 242 EQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGF 318 (389)
T ss_pred HH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHH
Confidence 63 233 355777888899999999999999887 556777777888888999999999999999999999988755
Q ss_pred HHHHHHHHhh--cCCChhHHHHHHHHHhcCCCCCCc
Q 047992 706 QRLILQIYAI--CGKPEDALKVRKLERENTRRNSFG 739 (868)
Q Consensus 706 ~~~l~~~y~~--~g~~~~a~~~~~~m~~~~~~k~~g 739 (868)
..++...+.. .|+.+++..+.+.|..++++..|.
T Consensus 319 ~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 319 HRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 5444443322 569999999999999999998887
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=4.5e-16 Score=184.11 Aligned_cols=358 Identities=8% Similarity=-0.008 Sum_probs=225.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhc
Q 047992 366 GNSLINMYSKCEELEAAERVFDMIKD---KDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQN 442 (868)
Q Consensus 366 ~~~li~~y~~~g~~~~A~~vf~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 442 (868)
+..+...+.+.|++++|..+++.... .+...+..++..+...|++++|+..+++..+.. +.+.. +..+...+...
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~ 129 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRA 129 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHC
Confidence 44455555555555555555555322 233344455555555556666666665555442 22223 55555556666
Q ss_pred CCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHH------hHHHHHHHH-----h
Q 047992 443 GNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCV------TILSVLPAC-----A 511 (868)
Q Consensus 443 g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~a~-----~ 511 (868)
|+.++|+..++++.+.. |.+...+..+...+...+..++|++.++.... .|+.. .....+... .
T Consensus 130 g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~ 204 (765)
T PRK10049 130 GRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRS 204 (765)
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccC
Confidence 66666666666665543 33444445555555566666666666655442 22210 000111111 1
Q ss_pred chhch---HHHHHHHHHHHHh-CCCCChh--HHHHH---HHHHHhcCCHHHHHHHHhcCCCCCc--ee--cHHHHHHHHh
Q 047992 512 YLVAS---NKVKEIHGCVLRR-SLESSLP--VMNSL---IDTYAKSGNIVYSRTIFDGMSSKDI--IT--WNSLICGYVL 578 (868)
Q Consensus 512 ~~~~~---~~~~~i~~~~~~~-~~~~~~~--~~~~L---i~~y~k~g~~~~A~~~f~~~~~~d~--~~--~~~li~~~~~ 578 (868)
..+.+ +.+.+.+..+++. ...|+.. ...+. +-++...|+.++|...|+++...+. .. --.+...|..
T Consensus 205 ~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~ 284 (765)
T PRK10049 205 EKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLK 284 (765)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHh
Confidence 11122 4555555565543 1222221 11111 2233466999999999998875321 11 1224668889
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhhccCChHHHHHHHHHhhhhcC----------CCCC---hhHH
Q 047992 579 HGFWHAALDLFDQMKSFGLKPNR-----GTFLSIILAHSLAGMVDLGKKVFCSITECYQ----------IIPM---IEHY 640 (868)
Q Consensus 579 ~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~y 640 (868)
.|++++|+..|+++.+. .|.. .....+..++...|..++|..+++.+.+... -.|+ ...+
T Consensus 285 ~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~ 362 (765)
T PRK10049 285 LHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQ 362 (765)
T ss_pred cCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHH
Confidence 99999999999998763 3432 3455566678899999999999998876421 1223 2345
Q ss_pred HHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 047992 641 SAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGK 718 (868)
Q Consensus 641 ~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 718 (868)
..+..++...|++++|++.++++ ...| +...|..+...+...|+.+.|+..++++++++|++...++.++.++...|+
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~ 442 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQE 442 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC
Confidence 66788999999999999999997 3344 455899999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhc
Q 047992 719 PEDALKVRKLEREN 732 (868)
Q Consensus 719 ~~~a~~~~~~m~~~ 732 (868)
|++|.++.+.+.++
T Consensus 443 ~~~A~~~~~~ll~~ 456 (765)
T PRK10049 443 WRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999988777543
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=5.5e-14 Score=140.71 Aligned_cols=474 Identities=12% Similarity=0.129 Sum_probs=303.2
Q ss_pred hHHHhHHhhHHHHhccCCCCcc-------------hHHHHHHHHhCCChhHHHHHHHHHhhcCCCCCcccHHHHHHHHh-
Q 047992 3 IWILTTFQQLHSLLTKKSNPRF-------------RDTHLDFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACI- 68 (868)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~-------------~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~- 68 (868)
+|+..+|..+.+.-..-|...+ -..-+-....+|...++.-+|+.|.+.|+..+...-..|++.-+
T Consensus 83 r~l~~E~~~LF~~~~~QP~l~~F~P~~l~~~~~V~~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~ 162 (625)
T KOG4422|consen 83 RELATEWPTLFAFDRDQPQLPVFRPRHLADPLQVETENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTY 162 (625)
T ss_pred HHHHHhchHhhhccccCccccccCchhcCCchhhcchhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence 6888888777765433333221 12233446788999999999999999999888887777776532
Q ss_pred -ccCChHHH-HHHHHHh-hhcCCCChhhhhHHHHHHHhcCChhHHHHHHhhcCCCCceeHHHHHHHHHhCCChhHHHHHH
Q 047992 69 -DSNSIHLA-RKLHAFL-NLVTEIDVFVKTKLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELF 145 (868)
Q Consensus 69 -~~~~~~~a-~~i~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~ 145 (868)
.+.+..-+ .+-|-.+ +.|-. +..+ -|.|.+.+ -+|+..| +...++.+||.|.++....+.|.++|
T Consensus 163 ~Ns~~~~~~E~~~Fv~~~~~~E~-S~~s--------WK~G~vAd--L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~ 230 (625)
T KOG4422|consen 163 YNSSNVPFAEWEEFVGMRNFGED-STSS--------WKSGAVAD--LLFETLP-KTDETVSIMIAGLCKFSSLERARELY 230 (625)
T ss_pred hcCCCCcchhHHHHhhccccccc-cccc--------cccccHHH--HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHH
Confidence 33332222 1122222 22222 2222 24565554 5555554 55678999999999999999999999
Q ss_pred HHhHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhh
Q 047992 146 FLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVA 225 (868)
Q Consensus 146 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~ 225 (868)
.+......+.+..+|+.+|.+-+ +..++.+...|+.....||.+++|++++..++.|+++.|++
T Consensus 231 kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~------------ 294 (625)
T KOG4422|consen 231 KEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARK------------ 294 (625)
T ss_pred HHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHH------------
Confidence 99999888999999999998865 34458899999999999999999999999999999888875
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHH-HHHHHHHHHhcCCCCCeeeHHHHHHHHH
Q 047992 226 WNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDV-AMEMVKRMESLGITPDVFTWTCMISGFA 304 (868)
Q Consensus 226 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~~~~~li~~~~ 304 (868)
.|++++.+|++-|+.|...+|..+|..+.+.++..+ |..++.++...
T Consensus 295 ---------------aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~----------------- 342 (625)
T KOG4422|consen 295 ---------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNS----------------- 342 (625)
T ss_pred ---------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHh-----------------
Confidence 467888999999999999888888888887776543 33333333321
Q ss_pred hcCChhHHHHHHHHHHhCCcc----CCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHH
Q 047992 305 QNGRTSQALDLFKEMSFVGVM----PNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELE 380 (868)
Q Consensus 305 ~~g~~~~A~~l~~~m~~~g~~----pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 380 (868)
+....++ .|...|.+.+..|.++.+.+.|.++++........ -..|..
T Consensus 343 --------------ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~-------------~~ig~~- 394 (625)
T KOG4422|consen 343 --------------LTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNW-------------KFIGPD- 394 (625)
T ss_pred --------------hccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-------------hhcChH-
Confidence 1112222 24456788889999999999999998776432100 000000
Q ss_pred HHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCC
Q 047992 381 AAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDK 460 (868)
Q Consensus 381 ~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~ 460 (868)
+ ....-|..+....++....+.-+..|+.|.-.-+-|+..+...++++..-.|.++-.-+++..+..-+
T Consensus 395 -----~-----~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g- 463 (625)
T KOG4422|consen 395 -----Q-----HRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG- 463 (625)
T ss_pred -----H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh-
Confidence 0 01123444555556666667777777777766667777888888888777888877777777775422
Q ss_pred CCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHH---hHHHHHHHHhchhchHHH-HHHHHHHHHhCCCCChh
Q 047992 461 VKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCV---TILSVLPACAYLVASNKV-KEIHGCVLRRSLESSLP 536 (868)
Q Consensus 461 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~~~~~~~-~~i~~~~~~~~~~~~~~ 536 (868)
..-+.+--.+++..|......|+.. -+.....-|+. +...+ ..--..+.+ .+....
T Consensus 464 ----------------ht~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa--d~~e~~e~~~~R~r~--~~~~~t 523 (625)
T KOG4422|consen 464 ----------------HTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAA--DIKEAYESQPIRQRA--QDWPAT 523 (625)
T ss_pred ----------------hhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH--HHHHHHHhhHHHHHh--ccCChh
Confidence 1112222334445555444455422 23333322221 11111 111112222 344556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC-CC----CceecHHHHHH---HHhcCChHHHHHHHHHHHHC
Q 047992 537 VMNSLIDTYAKSGNIVYSRTIFDGMS-SK----DIITWNSLICG---YVLHGFWHAALDLFDQMKSF 595 (868)
Q Consensus 537 ~~~~Li~~y~k~g~~~~A~~~f~~~~-~~----d~~~~~~li~~---~~~~g~~~~A~~l~~~m~~~ 595 (868)
..+...-.+.+.|+.++|.++|.-+. .. -....|+|+.- -.+.....+|+..++-|...
T Consensus 524 ~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 524 SLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 66777778889999999999998773 22 23356655433 33456667777777776553
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.75 E-value=2.1e-15 Score=178.48 Aligned_cols=409 Identities=10% Similarity=-0.022 Sum_probs=245.9
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCC-cccHHHHH
Q 047992 257 GVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPN-GVTITSAI 335 (868)
Q Consensus 257 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll 335 (868)
+.....-.+......|+.++|++++.+..... +.+...+..+...+.+.|++++|+++|++.... .|+ ......+.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la 90 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLI 90 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 44445556667777888888888887776522 224445777777788888888888888877543 233 33344444
Q ss_pred HHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCC---CeehHHHHHHHHHhcCChhH
Q 047992 336 SACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDK---DVYSWNSMIAGYCQAGYCGK 412 (868)
Q Consensus 336 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~---~~~~~~~li~~~~~~g~~~~ 412 (868)
..+...++.+.|...+..+++.. +.+.. +..+..++...|+.++|...++++.+. +...+..+...+...+..++
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Confidence 55556666666666666665552 22333 555555556666666666666555432 22334444445555555555
Q ss_pred HHHHHHHhHhCCCCCCee------ehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCCh---hH
Q 047992 413 AYELFIKMQESDVPPNVI------TWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQK---NN 483 (868)
Q Consensus 413 A~~l~~~m~~~g~~p~~~------t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~---~~ 483 (868)
|+..++.... .|+.. ....++..+.. ......+++ ++
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~-------------------------------~~~~~~~r~~~ad~ 214 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFM-------------------------------PTRSEKERYAIADR 214 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcc-------------------------------cccChhHHHHHHHH
Confidence 5555544442 12200 00001111100 000111122 44
Q ss_pred HHHHHHHhhcC-CCCCCHH-hHH----HHHHHHhchhchHHHHHHHHHHHHhCCC-CChhHHHHHHHHHHhcCCHHHHHH
Q 047992 484 ALGVFRKMQSS-CFYPNCV-TIL----SVLPACAYLVASNKVKEIHGCVLRRSLE-SSLPVMNSLIDTYAKSGNIVYSRT 556 (868)
Q Consensus 484 A~~~~~~m~~~-g~~p~~~-t~~----~ll~a~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~Li~~y~k~g~~~~A~~ 556 (868)
|++.++.+... ...|+.. .+. ..+.+....+..+.+...+..+++.+-+ |+ .....+.+.|...|++++|..
T Consensus 215 Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~ 293 (765)
T PRK10049 215 ALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQS 293 (765)
T ss_pred HHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHH
Confidence 55555555432 1122211 111 0122333445566666666666554321 21 122225677888888888888
Q ss_pred HHhcCCCCCc-------eecHHHHHHHHhcCChHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHhhccC
Q 047992 557 IFDGMSSKDI-------ITWNSLICGYVLHGFWHAALDLFDQMKSFG-----------LKPNR---GTFLSIILAHSLAG 615 (868)
Q Consensus 557 ~f~~~~~~d~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g 615 (868)
.|+++...+. ..+..+..++...|++++|+++++++.... -.||. ..+.....++...|
T Consensus 294 ~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g 373 (765)
T PRK10049 294 ILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN 373 (765)
T ss_pred HHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC
Confidence 8887653221 234455667788899999999988888731 12332 23345566788899
Q ss_pred ChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 047992 616 MVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDS-SIWEALLTACRIHGNIDLAVLAIE 693 (868)
Q Consensus 616 ~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~-~~w~~ll~a~~~~~~~~~a~~~~~ 693 (868)
+.++|+..++.+....+ .+...+..+..++.+.|+.++|++.+++. ...||. ..+..+.......|+++.|+..++
T Consensus 374 ~~~eA~~~l~~al~~~P--~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 374 DLPQAEMRARELAYNAP--GNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred CHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999999887533 33567888899999999999999999998 566764 477777778888999999999999
Q ss_pred HHhccCCCCchhHH
Q 047992 694 RLFDLEPGDVLIQR 707 (868)
Q Consensus 694 ~~~~l~p~~~~~~~ 707 (868)
++++.+|+++.+..
T Consensus 452 ~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 452 DVVAREPQDPGVQR 465 (765)
T ss_pred HHHHhCCCCHHHHH
Confidence 99999999985543
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.74 E-value=2.4e-15 Score=174.13 Aligned_cols=326 Identities=9% Similarity=-0.010 Sum_probs=205.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCC
Q 047992 368 SLINMYSKCEELEAAERVFDMIKD---KDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGN 444 (868)
Q Consensus 368 ~li~~y~~~g~~~~A~~vf~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 444 (868)
.++....+.|+.++|..+++.+.. .+...+..++.+....|++++|+..|+++.... +.+...+..+...+.+.|+
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC
Confidence 344555667777777777766643 244455556666667777777777777777653 2344556666677777777
Q ss_pred HHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHH
Q 047992 445 EDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHG 524 (868)
Q Consensus 445 ~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~ 524 (868)
+++|...|++..... +.+...|..+...+.+.|++++|...++.+... .|+.......+..+...|+++.|.....
T Consensus 126 ~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~--~P~~~~a~~~~~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 126 YATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQE--VPPRGDMIATCLSFLNKSRLPEDHDLAR 201 (656)
T ss_pred HHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777777776543 445566777777777777777777777766543 2332222222233556677777777776
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHH----HHHHHHHHHHCCC
Q 047992 525 CVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHA----ALDLFDQMKSFGL 597 (868)
Q Consensus 525 ~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~ 597 (868)
.+++....++......+...|.+.|+.++|...|++.. +.+...++.+...|...|+.++ |+..|++..+ +
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l 279 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--F 279 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--h
Confidence 66654322333344445566777777777777777554 3345566667777777777764 6777777776 4
Q ss_pred CCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHHHHHH
Q 047992 598 KPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSSIWEA 674 (868)
Q Consensus 598 ~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~~w~~ 674 (868)
.|+. ..+..+...+...|+.++|..+++...+. .|+ ...+..+..+|.+.|++++|.+.++++ ...|+...|..
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~ 356 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNR 356 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHH
Confidence 5654 45566666677777777777777776653 232 334555666777777777777777766 34555443333
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 047992 675 -LLTACRIHGNIDLAVLAIERLFDLEPGDV 703 (868)
Q Consensus 675 -ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 703 (868)
+..++...|+.+.|...++++++.+|++.
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 34456667777777777777777777654
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.74 E-value=2.6e-14 Score=165.47 Aligned_cols=369 Identities=11% Similarity=0.025 Sum_probs=236.7
Q ss_pred hchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHh--cCChhHHHHH
Q 047992 339 TDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQ--AGYCGKAYEL 416 (868)
Q Consensus 339 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~--~g~~~~A~~l 416 (868)
...|+++.|.+++..+++.. +.+..++..++..|...++.++|.+.++.+...+......+..+|.. .++..+|++.
T Consensus 113 ~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHH
Confidence 33344444444444444443 22345555677788888999999999988877544433334444444 4555558888
Q ss_pred HHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCC
Q 047992 417 FIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCF 496 (868)
Q Consensus 417 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 496 (868)
++++.+.. +-+...+..+.....+.|-...|.++..+-+.-. .+....| + ..+.|.+..+- +.
T Consensus 192 ~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f--~~~~~~~--l--------~~~~~a~~vr~----a~ 254 (822)
T PRK14574 192 SSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV--SAEHYRQ--L--------ERDAAAEQVRM----AV 254 (822)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc--CHHHHHH--H--------HHHHHHHHHhh----cc
Confidence 88888774 3345556777788888888888887777653211 1111111 0 01111111111 11
Q ss_pred CCCHHhHHHHHHHHhchhchHHHHHHHHHHHHh-C-CCCCh-hHHHHHHH---HHHhcCCHHHHHHHHhcCCCCC--ce-
Q 047992 497 YPNCVTILSVLPACAYLVASNKVKEIHGCVLRR-S-LESSL-PVMNSLID---TYAKSGNIVYSRTIFDGMSSKD--II- 567 (868)
Q Consensus 497 ~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~-~-~~~~~-~~~~~Li~---~y~k~g~~~~A~~~f~~~~~~d--~~- 567 (868)
.|+..- -.+....+.+..-.+.++.. + .++.. ....+.+| ++.+.|+..++.+.|+.+.... +.
T Consensus 255 ~~~~~~-------~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~ 327 (822)
T PRK14574 255 LPTRSE-------TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPD 327 (822)
T ss_pred cccccc-------hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCH
Confidence 111000 00111223333333333331 1 12221 22334444 4567899999999999988432 23
Q ss_pred -ecHHHHHHHHhcCChHHHHHHHHHHHHCCC----CC-CHHHHHHHHHHhhccCChHHHHHHHHHhhhhcC---------
Q 047992 568 -TWNSLICGYVLHGFWHAALDLFDQMKSFGL----KP-NRGTFLSIILAHSLAGMVDLGKKVFCSITECYQ--------- 632 (868)
Q Consensus 568 -~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--------- 632 (868)
.--++..+|...+++++|+.+|+++..... .| +......|..|+..++++++|..+++.+.+.-.
T Consensus 328 y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~ 407 (822)
T PRK14574 328 YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLP 407 (822)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCC
Confidence 345678889999999999999999876431 12 223356788899999999999999999887322
Q ss_pred -CCCCh---hHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhH
Q 047992 633 -IIPMI---EHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQ 706 (868)
Q Consensus 633 -~~p~~---~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 706 (868)
-.|+. +.+..++..+...|++.+|++.++++ ...| |..++..+....+..|+...|+..++.+..++|++...+
T Consensus 408 ~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~ 487 (822)
T PRK14574 408 GKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILE 487 (822)
T ss_pred CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHH
Confidence 02332 24455677788999999999999998 3334 566889999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 707 RLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 707 ~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
+.+++.+-..|+|++|.++.+...+.
T Consensus 488 ~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 488 RAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 99999999999999998877655443
No 26
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.73 E-value=4.3e-12 Score=133.80 Aligned_cols=613 Identities=15% Similarity=0.115 Sum_probs=458.9
Q ss_pred cCChhHHHHHHhhcCCC---CceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHHHHH
Q 047992 104 CGCLDDAREVFEDMRER---NLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMH 180 (868)
Q Consensus 104 ~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 180 (868)
.++...|+.++....+- +...|-+-.+.=-..|.+..|..+..+=-+. .+-+...| |.++ ++...+.|+.+.
T Consensus 264 l~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvW---Leai-RLhp~d~aK~vv 338 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVW---LEAI-RLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHH---HHHH-hcCChHHHHHHH
Confidence 34677788888887653 3445655544444556666665554332211 12222233 3332 455667788887
Q ss_pred HHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccC
Q 047992 181 SLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDE---KDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLG 257 (868)
Q Consensus 181 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 257 (868)
...++.-. .++.+|-...+. ..+...-.+++....+ .++..|-+.+ .....+.|.-++.+..+.- +.+
T Consensus 339 A~Avr~~P-~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~iP~sv~LWKaAV----elE~~~darilL~rAvecc-p~s 409 (913)
T KOG0495|consen 339 ANAVRFLP-TSVRLWLKAADL---ESDTKNKKRVLRKALEHIPRSVRLWKAAV----ELEEPEDARILLERAVECC-PQS 409 (913)
T ss_pred HHHHHhCC-CChhhhhhHHhh---hhHHHHHHHHHHHHHHhCCchHHHHHHHH----hccChHHHHHHHHHHHHhc-cch
Confidence 77777542 233333222211 1122223344443332 3556675544 4456677888888776531 222
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHH----HHhCCccCCcccHHH
Q 047992 258 VVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKE----MSFVGVMPNGVTITS 333 (868)
Q Consensus 258 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~----m~~~g~~pd~~t~~~ 333 (868)
.-|.-+|++..-++.|..+++...+. ++.+...|-+-...=-.+|+.+....++.+ +...|+..+...|..
T Consensus 410 ----~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~ 484 (913)
T KOG0495|consen 410 ----MDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLK 484 (913)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHH
Confidence 33555677788889999999998876 444888888887777888988888877654 556789999999998
Q ss_pred HHHHHhchhhHHHHHHHHHHHHHhCCCCC--ccHHHHHHHHHHcCCCHHHHHHHHHhcCC---CCeehHHHHHHHHHhcC
Q 047992 334 AISACTDLKALAMGMEIHSLAVKMGFTDD--VLVGNSLINMYSKCEELEAAERVFDMIKD---KDVYSWNSMIAGYCQAG 408 (868)
Q Consensus 334 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~vf~~~~~---~~~~~~~~li~~~~~~g 408 (868)
=..+|-..|..-.+..|...++..|++.. ..+++.-.+.+.+.+.++-|+.+|....+ .+...|...+..--..|
T Consensus 485 eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hg 564 (913)
T KOG0495|consen 485 EAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHG 564 (913)
T ss_pred HHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcC
Confidence 89999999999999999999998887643 34778888889999999999999987765 46677888888888889
Q ss_pred ChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHH
Q 047992 409 YCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVF 488 (868)
Q Consensus 409 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 488 (868)
..++-..+|.+....- +-....|-.....+-..|++..|..++....+.. +.+...|-+-+..-..+..+++|..+|
T Consensus 565 t~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~--pnseeiwlaavKle~en~e~eraR~ll 641 (913)
T KOG0495|consen 565 TRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--PNSEEIWLAAVKLEFENDELERARDLL 641 (913)
T ss_pred cHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--CCcHHHHHHHHHHhhccccHHHHHHHH
Confidence 9999999999988764 3456667777777888999999999999887764 557788999999999999999999999
Q ss_pred HHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-C
Q 047992 489 RKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSS--K-D 565 (868)
Q Consensus 489 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~-d 565 (868)
.+... ..|+...|.--..---.++..+.+.++.+..++. ++.-..+|..+.+.|-..++++.|+..|..-.. | .
T Consensus 642 akar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ 718 (913)
T KOG0495|consen 642 AKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS 718 (913)
T ss_pred HHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 98875 5677777766666666788999999999888884 555677899999999999999999999986553 3 4
Q ss_pred ceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHH
Q 047992 566 IITWNSLICGYVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMI 644 (868)
Q Consensus 566 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 644 (868)
+..|-.+...--+.|....|..+|++.+.. .| |...|...+..-.+.|..++|........++ .+.+-..|+--|
T Consensus 719 ipLWllLakleEk~~~~~rAR~ildrarlk--NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI 794 (913)
T KOG0495|consen 719 IPLWLLLAKLEEKDGQLVRARSILDRARLK--NPKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAI 794 (913)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHH
Confidence 557888888888899999999999999884 45 4578899999999999999999999888874 344556788889
Q ss_pred HhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHH
Q 047992 645 DLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALK 724 (868)
Q Consensus 645 d~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 724 (868)
.+..|.++-..+.+.+++. +-|+.+.-+..........++.|..-++++++.+|++..+|..+-..+...|.-++-.+
T Consensus 795 ~le~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~ke 872 (913)
T KOG0495|consen 795 WLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKE 872 (913)
T ss_pred HhccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHH
Confidence 9999999988888888886 45666666666777888999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCcccEEEEcCEE
Q 047992 725 VRKLERENTRRNSFGQCWIEVKNLV 749 (868)
Q Consensus 725 ~~~~m~~~~~~k~~g~s~i~~~~~~ 749 (868)
|++.-..... .-|..|+-+...|
T Consensus 873 v~~~c~~~EP--~hG~~W~avSK~i 895 (913)
T KOG0495|consen 873 VLKKCETAEP--THGELWQAVSKDI 895 (913)
T ss_pred HHHHHhccCC--CCCcHHHHHhhhH
Confidence 9987654332 2377887765544
No 27
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.73 E-value=1.5e-14 Score=168.32 Aligned_cols=447 Identities=13% Similarity=0.016 Sum_probs=228.7
Q ss_pred HHHHHHHHcCChHHHHHHHhhcCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCCh
Q 047992 197 SVLAVYVKCGKLIWARRFFESMDE--KDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQC 274 (868)
Q Consensus 197 ~li~~y~~~g~~~~A~~~f~~~~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 274 (868)
.....|.+.|+++.|...|++... |+...|..+..+|.+.|++++|++.+....+.. +.+...+..+..+|...|++
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKY 210 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence 345567777788888877776543 456677777788888888888888888877643 22455777778888888888
Q ss_pred HHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHH
Q 047992 275 DVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLA 354 (868)
Q Consensus 275 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~ 354 (868)
++|+.-|......+...+ .....++..+.. ..+.......... .+++......+.. +...........-+...
T Consensus 211 ~eA~~~~~~~~~~~~~~~-~~~~~~~~~~l~----~~a~~~~~~~l~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 211 ADALLDLTASCIIDGFRN-EQSAQAVERLLK----KFAESKAKEILET-KPENLPSVTFVGN-YLQSFRPKPRPAGLEDS 283 (615)
T ss_pred HHHHHHHHHHHHhCCCcc-HHHHHHHHHHHH----HHHHHHHHHHHhc-CCCCCCCHHHHHH-HHHHccCCcchhhhhcc
Confidence 888877766544321111 111111111111 1222222222211 1122222222111 11100000000000000
Q ss_pred HHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCC-CCC-Ceeeh
Q 047992 355 VKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESD-VPP-NVITW 432 (868)
Q Consensus 355 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p-~~~t~ 432 (868)
...+......++..+... .-....+++++|++.|+...+.+ ..| +...|
T Consensus 284 ----~~~~~~~~~~~~~l~~~~-------------------------~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~ 334 (615)
T TIGR00990 284 ----NELDEETGNGQLQLGLKS-------------------------PESKADESYEEAARAFEKALDLGKLGEKEAIAL 334 (615)
T ss_pred ----cccccccccchHHHHHHH-------------------------HHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHH
Confidence 000110001111100000 00011233444444444444332 111 22334
Q ss_pred hhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhc
Q 047992 433 NVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAY 512 (868)
Q Consensus 433 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 512 (868)
+.+...+...|++++|+..|++..+.. +.+...|..+...+...|++++|+..|++.... .|+
T Consensus 335 ~~lg~~~~~~g~~~eA~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~------------- 397 (615)
T TIGR00990 335 NLRGTFKCLKGKHLEALADLSKSIELD--PRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--NSE------------- 397 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC-------------
Confidence 445555555666666666666554432 223345555555666666666666666655432 121
Q ss_pred hhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHH
Q 047992 513 LVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLF 589 (868)
Q Consensus 513 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~ 589 (868)
+..++..+...|...|++++|...|++.. +.+...|..+...+.+.|+.++|+..|
T Consensus 398 ---------------------~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~ 456 (615)
T TIGR00990 398 ---------------------DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATF 456 (615)
T ss_pred ---------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 23344445555555556666655555443 233445555555666666666666666
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChh--------HHHHHHHhhhhcCChHHHHHHH
Q 047992 590 DQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIE--------HYSAMIDLYGRSGKLEEAMEFI 660 (868)
Q Consensus 590 ~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~--------~y~~lvd~l~r~g~~~eA~~~i 660 (868)
++.++ ..|+. ..+..+..++...|++++|+..|+...+ +.|+.. .+.....++...|++++|.+++
T Consensus 457 ~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~ 531 (615)
T TIGR00990 457 RRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLC 531 (615)
T ss_pred HHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 66655 34432 4455555556666666666666665544 122110 1111122334468899999998
Q ss_pred HhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 661 EDM-PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 661 ~~~-~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
++. ...|+.. .|..+...+...|+++.|...+++++++.+.....+ .+..|.++.+++...++
T Consensus 532 ~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~--------~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 532 EKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV--------QAISYAEATRTQIQVQE 596 (615)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 885 5556554 788888889999999999999999999987644322 22345566666554443
No 28
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.73 E-value=2.4e-15 Score=174.03 Aligned_cols=353 Identities=10% Similarity=0.003 Sum_probs=261.2
Q ss_pred cccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCC---CCeehHHHHHHHH
Q 047992 328 GVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKD---KDVYSWNSMIAGY 404 (868)
Q Consensus 328 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~---~~~~~~~~li~~~ 404 (868)
..-...++..+.+.|+.+.+..++...+.....+ ......++......|++++|...|+.+.. .+...|..+...+
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3445667778888899999999988888776444 33444455666678999999999988765 2456788888888
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHH
Q 047992 405 CQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNA 484 (868)
Q Consensus 405 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A 484 (868)
.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+.+.|++++|
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHH-HHHHHcCCHHHH
Confidence 99999999999999988753 3345667788888999999999999998776543 2333334333 347888999999
Q ss_pred HHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHH----HHHHHhc
Q 047992 485 LGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVY----SRTIFDG 560 (868)
Q Consensus 485 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~----A~~~f~~ 560 (868)
...++.+......++......+..++...|..+.+.+.+..+++.. +.+..++..|..+|.+.|+.++ |...|++
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 9999887765433444444455567778899999999888888743 3367778889999999999885 7888886
Q ss_pred CC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC
Q 047992 561 MS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM 636 (868)
Q Consensus 561 ~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 636 (868)
.. +.+...|..+...+...|++++|+..+++..+ ..|+. .....+..++...|++++|...|+.+.+. .|+
T Consensus 276 Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~ 350 (656)
T PRK15174 276 ALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLARE---KGV 350 (656)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---Ccc
Confidence 54 44566888888899999999999999999888 56765 45566677888899999999999888764 344
Q ss_pred h-hHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 047992 637 I-EHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGD 702 (868)
Q Consensus 637 ~-~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 702 (868)
. ..+..+..+|...|+.++|.+.+++. ...|+.. ..+++.|...+.++++.-+..
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~-----------~~~~~ea~~~~~~~~~~~~~~ 407 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL-----------PQSFEEGLLALDGQISAVNLP 407 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc-----------hhhHHHHHHHHHHHHHhcCCc
Confidence 3 22344567788899999999998886 4555543 355667888888777765543
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.69 E-value=4.7e-13 Score=155.14 Aligned_cols=214 Identities=10% Similarity=0.005 Sum_probs=127.1
Q ss_pred HHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhC-----CCCChhHHHHHHHHHHh
Q 047992 473 AGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRS-----LESSLPVMNSLIDTYAK 547 (868)
Q Consensus 473 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~Li~~y~k 547 (868)
-++...|++.++++.|+.|...|.+....+-..+.+++...+..++|..++..+.... .+++......|.-+|..
T Consensus 300 ~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld 379 (822)
T PRK14574 300 GALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE 379 (822)
T ss_pred HHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh
Confidence 3445555666666666666555543233333344444444444444444444433321 11122223445555555
Q ss_pred cCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHhhccCChHHHHHHHHH
Q 047992 548 SGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTF-LSIILAHSLAGMVDLGKKVFCS 626 (868)
Q Consensus 548 ~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~ 626 (868)
.|++++|..+++.+....+.-++ -+ |.. .....||-... ......+.-.|++.+|.+.++.
T Consensus 380 ~e~~~~A~~~l~~~~~~~p~~~~----~~---~~~-----------~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~ 441 (822)
T PRK14574 380 SEQLDKAYQFAVNYSEQTPYQVG----VY---GLP-----------GKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLED 441 (822)
T ss_pred cccHHHHHHHHHHHHhcCCcEEe----cc---CCC-----------CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555555555555432110000 00 000 01133444333 3344556788999999999998
Q ss_pred hhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCch
Q 047992 627 ITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVL 704 (868)
Q Consensus 627 m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~ 704 (868)
+.... +-+......+.+++...|+..+|++.++.. ...|+.. +...+..+....++++.|+.+.+++++..|++++
T Consensus 442 l~~~a--P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 442 LSSTA--PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 87632 334566888999999999999999999876 5667655 6667777788889999999999999999999985
Q ss_pred hH
Q 047992 705 IQ 706 (868)
Q Consensus 705 ~~ 706 (868)
.-
T Consensus 520 ~~ 521 (822)
T PRK14574 520 SQ 521 (822)
T ss_pred HH
Confidence 54
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.68 E-value=8.2e-11 Score=124.37 Aligned_cols=608 Identities=15% Similarity=0.118 Sum_probs=405.8
Q ss_pred CChHHHHHHHHHhhhcCCCChhhhhHHHHHHHhcCChhHHHHHHhhcC---CCCceeHHHHHHHHHhCCChhHHHHHHHH
Q 047992 71 NSIHLARKLHAFLNLVTEIDVFVKTKLLSVYAKCGCLDDAREVFEDMR---ERNLYTWSAMIGAYSRDQRWREVVELFFL 147 (868)
Q Consensus 71 ~~~~~a~~i~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~l~~~ 147 (868)
+++..|+.++..+....+.++..+-+-.+.=-..|++..|+.+...-- .++.-.|---|+ -..++.|..+.-.
T Consensus 265 ~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiR----Lhp~d~aK~vvA~ 340 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIR----LHPPDVAKTVVAN 340 (913)
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHh----cCChHHHHHHHHH
Confidence 567778888888722223334444444444456677777777765432 233334433332 2334444444444
Q ss_pred hHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCC---CChh
Q 047992 148 MVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDE---KDGV 224 (868)
Q Consensus 148 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~d~~ 224 (868)
... ..|+++. .-+++.--..+...-+.++...+.. ++.++..|-+. ....+.++|+.++.+..+ .+..
T Consensus 341 Avr--~~P~Sv~--lW~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKaA----VelE~~~darilL~rAveccp~s~d 411 (913)
T KOG0495|consen 341 AVR--FLPTSVR--LWLKAADLESDTKNKKRVLRKALEH-IPRSVRLWKAA----VELEEPEDARILLERAVECCPQSMD 411 (913)
T ss_pred HHH--hCCCChh--hhhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHHH----HhccChHHHHHHHHHHHHhccchHH
Confidence 333 2333332 1222222122222223333333332 23333344333 334455556666665443 1333
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHH----HHhcCCCCCeeeHHHHH
Q 047992 225 AWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKR----MESLGITPDVFTWTCMI 300 (868)
Q Consensus 225 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~~~~~li 300 (868)
.|. +|++..-++.|..+++...+ .++.+...|.+....=-..|..+...+++++ +...|+..+...|-.=.
T Consensus 412 Lwl----AlarLetYenAkkvLNkaRe-~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eA 486 (913)
T KOG0495|consen 412 LWL----ALARLETYENAKKVLNKARE-IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEA 486 (913)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHH
Confidence 333 34445556666666666553 3455666666666666666777766666654 33446666666776666
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCccCC--cccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCC
Q 047992 301 SGFAQNGRTSQALDLFKEMSFVGVMPN--GVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEE 378 (868)
Q Consensus 301 ~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 378 (868)
..+-..|..--+..+......-|+.-. ..|+......|.+.+.++-++.++..+++. ++.+..+|...+..--..|.
T Consensus 487 e~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt 565 (913)
T KOG0495|consen 487 EACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGT 565 (913)
T ss_pred HHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCc
Confidence 677777777667777666665565432 346777777788888888888888877765 35566677777777677788
Q ss_pred HHHHHHHHHhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhc
Q 047992 379 LEAAERVFDMIKD---KDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRM 455 (868)
Q Consensus 379 ~~~A~~vf~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m 455 (868)
.++-..+|+.... +..+.|-.....+-..|+...|..++.+..+... -+...|-+-+..-..+..++.|..+|.+.
T Consensus 566 ~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llaka 644 (913)
T KOG0495|consen 566 RESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKA 644 (913)
T ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 8888888887654 3556788888888888999999988888887652 25667788888888888999999999888
Q ss_pred ccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHH-HHHHHHhchhchHHHHHHHHHHHHhCCCCC
Q 047992 456 GKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTIL-SVLPACAYLVASNKVKEIHGCVLRRSLESS 534 (868)
Q Consensus 456 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~ 534 (868)
... .++...|.--+..---.++.++|++++++..+ .-|+..-+- .+-..+-+.++++.++..+..-.+. .+..
T Consensus 645 r~~---sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ 718 (913)
T KOG0495|consen 645 RSI---SGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNS 718 (913)
T ss_pred hcc---CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCC
Confidence 764 57788888878877788889999999887764 466655443 3334456667777777776654442 3347
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 047992 535 LPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAH 611 (868)
Q Consensus 535 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 611 (868)
+.+|-.|.+.-.+.|.+-.|+.+|++.. ++|...|-..|..-.++|..++|..+..+.++. ..-+...|.--+...
T Consensus 719 ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le 797 (913)
T KOG0495|consen 719 IPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLE 797 (913)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhc
Confidence 8899999999999999999999999765 457889999999999999999999999998884 333446666666666
Q ss_pred hccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHH
Q 047992 612 SLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSS-IWEALLTACRIHGNIDLAV 689 (868)
Q Consensus 612 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~~~~~~a~ 689 (868)
-+.+.-......++.. +-+....-.+..++-...+++.|.+.|.+. ...||.. +|--+..-...||+-+.-.
T Consensus 798 ~~~~rkTks~DALkkc------e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~k 871 (913)
T KOG0495|consen 798 PRPQRKTKSIDALKKC------EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQK 871 (913)
T ss_pred cCcccchHHHHHHHhc------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHH
Confidence 6666644444444332 233344566777888889999999999988 6667654 9999999999999999999
Q ss_pred HHHHHHhccCCCCchhHHHHHH
Q 047992 690 LAIERLFDLEPGDVLIQRLILQ 711 (868)
Q Consensus 690 ~~~~~~~~l~p~~~~~~~~l~~ 711 (868)
.++.+...-+|.+...|...|.
T Consensus 872 ev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 872 EVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHhccCCCCCcHHHHHhh
Confidence 9999999999999888877664
No 31
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.67 E-value=2.8e-12 Score=139.76 Aligned_cols=647 Identities=14% Similarity=0.090 Sum_probs=345.8
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHhccCChHHHHHHHHHh-hhcCCCChhhhhHHHHHHHhcCChhHHHHHHhhcCCCC
Q 047992 43 TVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFL-NLVTEIDVFVKTKLLSVYAKCGCLDDAREVFEDMRERN 121 (868)
Q Consensus 43 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~ 121 (868)
.++-.+...|+.|+..||.+++..|+..|+++.|- ++..| ...++-...+.+.++......++.+.+. .|-
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45666777899999999999999999999999988 89988 7777777888999999988888887765 677
Q ss_pred ceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHH-HhCCCCCcchHHHHHH
Q 047992 122 LYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVI-KLGMSCVRRVRNSVLA 200 (868)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~li~ 200 (868)
..+|+.|..+|.+.|+... ++..++- ...+...++..|....-..++-.+. .-++-||. ...+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqd-----------Le~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQD-----------LESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHH-----------HHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHH
Confidence 7899999999999998765 2222220 1112222222222111111110000 00111222 22333
Q ss_pred HHHHcCChHHHHHHHhhcCCC--ChhhHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHH
Q 047992 201 VYVKCGKLIWARRFFESMDEK--DGVAWNSMISGYFQIGE-NDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVA 277 (868)
Q Consensus 201 ~y~~~g~~~~A~~~f~~~~~~--d~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 277 (868)
...-.|-++.+.++...+|.. +. ..-..++-...... +++-........+ .|++.+|.+++..-...|+++.|
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~A 223 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGA 223 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhH
Confidence 444556677777777776642 11 11112333333222 2222222222222 58888999999988899999999
Q ss_pred HHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHh
Q 047992 278 MEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKM 357 (868)
Q Consensus 278 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 357 (868)
..++.+|.++|++.+..-|..++-+ .++...+..+++-|...|+.|+..|+..-+..|...+....+.+....
T Consensus 224 k~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~---- 296 (1088)
T KOG4318|consen 224 KNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQL---- 296 (1088)
T ss_pred HHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccch----
Confidence 9999999999988888877777777 778888888888888889999999988877777665543332221100
Q ss_pred CCCCCccHHHHHHHHHHcCCCHHH--HHHHHHhcCC-------CCeehHHHHHHHHHhcCChhHHHHHHHHhHhCC--CC
Q 047992 358 GFTDDVLVGNSLINMYSKCEELEA--AERVFDMIKD-------KDVYSWNSMIAGYCQAGYCGKAYELFIKMQESD--VP 426 (868)
Q Consensus 358 g~~~~~~~~~~li~~y~~~g~~~~--A~~vf~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~ 426 (868)
....+..++.++++.......++. +.-+....++ .....|...+ -...+|.-++..++-..|..-- ..
T Consensus 297 ~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s 375 (1088)
T KOG4318|consen 297 AHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDS 375 (1088)
T ss_pred hhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccC
Confidence 000001111111111000001100 0001111110 0111222111 1112333333333333332110 00
Q ss_pred C-CeeehhhHHHHHHh----------------------cC------------CHHHHHHHHHhcccCCCCCCCeeeh---
Q 047992 427 P-NVITWNVLISGYIQ----------------------NG------------NEDEAVDLFQRMGKNDKVKRNTASW--- 468 (868)
Q Consensus 427 p-~~~t~~~li~~~~~----------------------~g------------~~~~A~~~f~~m~~~~~~~~~~~~~--- 468 (868)
+ ++..|..++.-|.+ .. +...+.+-+..+... ........|
T Consensus 376 ~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~-Eler~he~~~~~ 454 (1088)
T KOG4318|consen 376 GQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSST-ELERSHEPWPLI 454 (1088)
T ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHH-HHhcccccchhh
Confidence 0 11112122211111 00 111111111111000 001111111
Q ss_pred --------hhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHh--CCCCChhHH
Q 047992 469 --------NSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRR--SLESSLPVM 538 (868)
Q Consensus 469 --------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~ 538 (868)
+.++-.++..-+..+++..-+..... .-| ..|..++.-|.....++.+..+.+.+... .+..|...+
T Consensus 455 ~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m 531 (1088)
T KOG4318|consen 455 AHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLM 531 (1088)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhH
Confidence 23344444444444444332222211 111 34667777777777777777777776442 244567778
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCc------eecHHHHHHHHhcCChHHHHHHHHHHHHCCC---------------
Q 047992 539 NSLIDTYAKSGNIVYSRTIFDGMSSKDI------ITWNSLICGYVLHGFWHAALDLFDQMKSFGL--------------- 597 (868)
Q Consensus 539 ~~Li~~y~k~g~~~~A~~~f~~~~~~d~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--------------- 597 (868)
..+.+...+-+.+.++..+..++.+.-. .+.--|..+.+..|+.+.--++++-+...|+
T Consensus 532 ~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd 611 (1088)
T KOG4318|consen 532 TSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDD 611 (1088)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccc
Confidence 8888888888888888888887764211 1222334445556666555555555444332
Q ss_pred ---------------CCCHHHHHHHHHH---------------------hhccCChHHHHHHHHHhhhhcCC--------
Q 047992 598 ---------------KPNRGTFLSIILA---------------------HSLAGMVDLGKKVFCSITECYQI-------- 633 (868)
Q Consensus 598 ---------------~p~~~t~~~ll~a---------------------~~~~g~~~~a~~~~~~m~~~~~~-------- 633 (868)
+|.....-.+... +.+.|.+.++.++.+ ..|+
T Consensus 612 ~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~e----tpG~r~r~~RDr 687 (1088)
T KOG4318|consen 612 QSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITE----TPGVRCRNGRDR 687 (1088)
T ss_pred hhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccc----cCcccccCCCcc
Confidence 2222221222211 122223323322221 1111
Q ss_pred -------CC---------ChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHH
Q 047992 634 -------IP---------MIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHG---NIDLAVLAIER 694 (868)
Q Consensus 634 -------~p---------~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~---~~~~a~~~~~~ 694 (868)
.| ...+..-+..+|-+.|+++.|..++.++++-|+......|++..+.+. |+..+...-++
T Consensus 688 ~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ek 767 (1088)
T KOG4318|consen 688 DTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEK 767 (1088)
T ss_pred ccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHH
Confidence 01 111233366688899999999999999998999998888988888764 66777777788
Q ss_pred HhccCCCCc---hhHHHHHHHHhhcCCCh-hHHHHHHHHHhcC
Q 047992 695 LFDLEPGDV---LIQRLILQIYAICGKPE-DALKVRKLERENT 733 (868)
Q Consensus 695 ~~~l~p~~~---~~~~~l~~~y~~~g~~~-~a~~~~~~m~~~~ 733 (868)
+-++.|..+ ..|.-.+- .+.+++.. -|.+.....++..
T Consensus 768 as~~~~~f~ttt~~~~~~a~-~a~q~~qkkaAkk~f~r~eeq~ 809 (1088)
T KOG4318|consen 768 ASELRTLFPTTTCYYEGYAF-FATQTEQKKAAKKCFERLEEQL 809 (1088)
T ss_pred HHhcccccccchHhhhhhHH-HHhhHHHHHHHHHHHHHHHHcc
Confidence 887776543 33333333 34455555 5556777666663
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=1.6e-12 Score=130.36 Aligned_cols=330 Identities=15% Similarity=0.123 Sum_probs=212.1
Q ss_pred ceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhh--CCCChHHH-HHHHHHHHHhCCCCCcchHHHH
Q 047992 122 LYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACG--NCGDFEAG-KLMHSLVIKLGMSCVRRVRNSV 198 (868)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~l 198 (868)
+++=|.|+.. ..+|...++.-+|+.|.+.|+..+...-..|++..+ ...++--+ .+.|-.+.+.|- ....+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc---
Confidence 3456666654 457889999999999999998888776666665432 22222222 223333444442 222222
Q ss_pred HHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHH
Q 047992 199 LAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAM 278 (868)
Q Consensus 199 i~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 278 (868)
|.|++.+ ++-+...++..++..||.|+++-...+.|.+++.+-.....+.+..+||.+|.+-+-..+ .
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----K 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----H
Confidence 3455544 444555567789999999999999999999999999998889999999999987554333 7
Q ss_pred HHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhH----HHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHH-HHHHHHH
Q 047992 279 EMVKRMESLGITPDVFTWTCMISGFAQNGRTSQ----ALDLFKEMSFVGVMPNGVTITSAISACTDLKALAM-GMEIHSL 353 (868)
Q Consensus 279 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~-a~~i~~~ 353 (868)
+++.+|.+....||..|+|+++++..+.|+++. |++++.+|.+.|+.|...+|..+|..+.+.++..+ +..+...
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 889999999999999999999999999998764 56788889999999999999888887777666543 1111111
Q ss_pred HHH----hCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCe
Q 047992 354 AVK----MGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNV 429 (868)
Q Consensus 354 ~~~----~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 429 (868)
+.. ..+.|-.. . |.
T Consensus 339 I~N~ltGK~fkp~~p---------------------------~-----------------------------------d~ 356 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITP---------------------------T-----------------------------------DN 356 (625)
T ss_pred HHHhhccCcccCCCC---------------------------c-----------------------------------hh
Confidence 111 11111110 0 11
Q ss_pred eehhhHHHHHHhcCCHHHHHHHHHhcccCCC---CCCC---eeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhH
Q 047992 430 ITWNVLISGYIQNGNEDEAVDLFQRMGKNDK---VKRN---TASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTI 503 (868)
Q Consensus 430 ~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~---~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 503 (868)
..|...+..|....+.+-|.++-.-.....+ +.|+ ..-|..+....++....+.-+..|..|.-.-+-|+..+.
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 1122222222233333333332222211100 1111 123444556666677777777777777777778888888
Q ss_pred HHHHHHHhchhchHHHHHHHHHHHHhC
Q 047992 504 LSVLPACAYLVASNKVKEIHGCVLRRS 530 (868)
Q Consensus 504 ~~ll~a~~~~~~~~~~~~i~~~~~~~~ 530 (868)
..+++|....+.++....++...+..|
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 888888777777777777766665544
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.65 E-value=6.1e-11 Score=130.53 Aligned_cols=358 Identities=15% Similarity=0.174 Sum_probs=236.0
Q ss_pred HHHHhCCChhHHHHHHHHHhhcCCCCCcccHHHHHHHHhccCChHHHHHHHHHhhhcCCCChhhhhHHHHHHHhcCChhH
Q 047992 30 DFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFLNLVTEIDVFVKTKLLSVYAKCGCLDD 109 (868)
Q Consensus 30 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 109 (868)
+.+...|+.++|.+++..+.+... .+...|..|-..+-+.|+...+....-.+.+-.+.|...|..+.....+.|.++.
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 445556999999999999888764 3667888888888888999888776554455556677889999999999999999
Q ss_pred HHHHHhhcCCCCceeHHH---HHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHh
Q 047992 110 AREVFEDMRERNLYTWSA---MIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKL 186 (868)
Q Consensus 110 A~~~f~~~~~~~~~~~~~---li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 186 (868)
|+-.|.+..+.+..-|-. -+..|-+.|+...|...|.++.+..- |... +.+++.+.
T Consensus 226 A~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~------------------er~~d~i~-- 284 (895)
T KOG2076|consen 226 ARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDI------------------ERIEDLIR-- 284 (895)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhH------------------HHHHHHHH--
Confidence 999999887644433333 34567788999999999999876422 2111 11111110
Q ss_pred CCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCC--C---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHc---------
Q 047992 187 GMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDE--K---DGVAWNSMISGYFQIGENDEAHRLFDKMCRE--------- 252 (868)
Q Consensus 187 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--------- 252 (868)
..++.|...++-+.|.+.++.... . +...+|.++..|.+...++.|......+...
T Consensus 285 ----------~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~ 354 (895)
T KOG2076|consen 285 ----------RVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEW 354 (895)
T ss_pred ----------HHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhh
Confidence 112223333333444444444332 1 2334556666666666666666666555541
Q ss_pred ------------------CCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCCeeeHHHHHHHHHhcCChhHH
Q 047992 253 ------------------EIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLG--ITPDVFTWTCMISGFAQNGRTSQA 312 (868)
Q Consensus 253 ------------------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A 312 (868)
++.++..++ -++-++.+....+....+...+.+.. +.-+...|.-+..+|.+.|++.+|
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~A 433 (895)
T KOG2076|consen 355 DTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEA 433 (895)
T ss_pred hhhhhccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 122233331 12222333333444444444444444 444667788888999999999999
Q ss_pred HHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCC
Q 047992 313 LDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDK 392 (868)
Q Consensus 313 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~ 392 (868)
+.+|..+......-+...|..+..++-.++..+.|.+.+..++... +.+..+--.|-..|.+.|+.++|.+.+..+..+
T Consensus 434 l~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~ 512 (895)
T KOG2076|consen 434 LRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINP 512 (895)
T ss_pred HHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCC
Confidence 9999998766555566778888888889999999999998888765 445667778888999999999999999998766
Q ss_pred Cee-----hH-------HHHHHHHHhcCChhHHHHHHHHhH
Q 047992 393 DVY-----SW-------NSMIAGYCQAGYCGKAYELFIKMQ 421 (868)
Q Consensus 393 ~~~-----~~-------~~li~~~~~~g~~~~A~~l~~~m~ 421 (868)
|.. .| -.....+.+.|+.++-+..-..|.
T Consensus 513 D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 513 DGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred CccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 522 11 223455677788777666666665
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.56 E-value=1.3e-10 Score=128.04 Aligned_cols=183 Identities=14% Similarity=0.179 Sum_probs=93.1
Q ss_pred CChhHHHHHHhhcCC---CCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCC-CcchHHHHHHHhhCCCChHHHHHHH
Q 047992 105 GCLDDAREVFEDMRE---RNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFP-DDFLFPKILQACGNCGDFEAGKLMH 180 (868)
Q Consensus 105 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~ 180 (868)
|++++|.+++.++.. ++...|..|-..|-+.|+.++++..+-..- -..| |...|..+-.-....|++..|.-.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA--HL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA--HLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHH--hcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 777777777777653 334567777777777777766665543322 1222 2233444444444455555555555
Q ss_pred HHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhh
Q 047992 181 SLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVT 260 (868)
Q Consensus 181 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~ 260 (868)
..+++... ++....-.-..+|- +.|+...|.+.|.++.....+.|..-
T Consensus 231 ~rAI~~~p-~n~~~~~ers~L~~-------------------------------~~G~~~~Am~~f~~l~~~~p~~d~er 278 (895)
T KOG2076|consen 231 SRAIQANP-SNWELIYERSSLYQ-------------------------------KTGDLKRAMETFLQLLQLDPPVDIER 278 (895)
T ss_pred HHHHhcCC-cchHHHHHHHHHHH-------------------------------HhChHHHHHHHHHHHHhhCCchhHHH
Confidence 55555442 22222222333444 44555555555555544332222222
Q ss_pred HHH----HHHHHHhcCChHHHHHHHHHHHhc-CCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047992 261 FNI----LIRSYNQLGQCDVAMEMVKRMESL-GITPDVFTWTCMISGFAQNGRTSQALDLFKEMSF 321 (868)
Q Consensus 261 ~~~----li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 321 (868)
+.. .++.+...++-+.|.+.++..... +-..+...++.++..|.+...++.|+.....+..
T Consensus 279 ~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~ 344 (895)
T KOG2076|consen 279 IEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRN 344 (895)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhc
Confidence 222 233344445555566555554442 2223455666777777777777777777766655
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.55 E-value=1e-11 Score=125.23 Aligned_cols=171 Identities=20% Similarity=0.241 Sum_probs=144.3
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHH
Q 047992 544 TYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDL 619 (868)
Q Consensus 544 ~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~ 619 (868)
.|.+.|++++|+..|-++. ..++.....+.+.|-...+..+|++++.+... +-|+. ..+.-+...|-+.|+-.+
T Consensus 533 t~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksq 610 (840)
T KOG2003|consen 533 TAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQ 610 (840)
T ss_pred cHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhh
Confidence 4678899999999998654 46777777888899999999999999988877 66655 666667778899999999
Q ss_pred HHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHh
Q 047992 620 GKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSSIWEALLTAC-RIHGNIDLAVLAIERLF 696 (868)
Q Consensus 620 a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~~w~~ll~a~-~~~~~~~~a~~~~~~~~ 696 (868)
|.+++..- |..-| ++++...+...|....-.++|+.++++. -+.|+.+-|..++..| |+.||+..|...++.+.
T Consensus 611 afq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~h 687 (840)
T KOG2003|consen 611 AFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIH 687 (840)
T ss_pred hhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 99876543 44444 6788888888888999999999999998 5899999999999988 67899999999999999
Q ss_pred ccCCCCchhHHHHHHHHhhcCCC
Q 047992 697 DLEPGDVLIQRLILQIYAICGKP 719 (868)
Q Consensus 697 ~l~p~~~~~~~~l~~~y~~~g~~ 719 (868)
..-|+|....-.|..+....|.-
T Consensus 688 rkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 688 RKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HhCccchHHHHHHHHHhccccch
Confidence 99999999999999998888754
No 36
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.54 E-value=4.3e-11 Score=130.72 Aligned_cols=604 Identities=13% Similarity=0.042 Sum_probs=351.2
Q ss_pred HHHHh-hhcCCCChhhhhHHHHHHHhcCChhHHHHHHhhcCCCC----ceeHHHHHHHHHhCCChhHHHHHHHHhHHCCC
Q 047992 79 LHAFL-NLVTEIDVFVKTKLLSVYAKCGCLDDAREVFEDMRERN----LYTWSAMIGAYSRDQRWREVVELFFLMVQDGL 153 (868)
Q Consensus 79 i~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 153 (868)
++..+ ..|..|+..+|..||..||..|+.+.|- +|.-|.-++ ...++.++.+..+.++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 34445 6889999999999999999999999998 888776543 346899999988888876654
Q ss_pred CCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcC---CCChhhHHHHH
Q 047992 154 FPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMD---EKDGVAWNSMI 230 (868)
Q Consensus 154 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~d~~~~~~li 230 (868)
.|.+.||..|+.+|...||+..-..+-..+ -.++..+...|....-..++-.+. .-.... ...+
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdL------------e~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda-~n~i 146 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDL------------ESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA-ENAI 146 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHH------------HHHHhhhhhhccCcHHHHHHhhcccCcccchhH-HHHH
Confidence 688889999999999999976522222211 223333444454444444444322 111112 2234
Q ss_pred HHHHhcCChhHHHHHHHHHHHcC-CccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCCh
Q 047992 231 SGYFQIGENDEAHRLFDKMCREE-IKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRT 309 (868)
Q Consensus 231 ~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 309 (868)
.-..-.|.++.+++++..|.... ..|..+ +++-.... .....++.+......-.|+..+|.+++.+-.-+|+.
T Consensus 147 lllv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~ 220 (1088)
T KOG4318|consen 147 LLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDV 220 (1088)
T ss_pred HHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCch
Confidence 44455667777777776665322 112111 12222221 222333333332222258999999999999999999
Q ss_pred hHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhc
Q 047992 310 SQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMI 389 (868)
Q Consensus 310 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~ 389 (868)
+.|..++.+|.+.|++.+..-|..++-+ .++......+..-|...|+.|+..++.--+--..+.|....+....+.-
T Consensus 221 d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~ 297 (1088)
T KOG4318|consen 221 DGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLA 297 (1088)
T ss_pred hhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchh
Confidence 9999999999999999999888877765 7788888899999999999999999887777766655533322211110
Q ss_pred CCCCeehHHHHHHHHHhcCC-----hhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccC--CCCC
Q 047992 390 KDKDVYSWNSMIAGYCQAGY-----CGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKN--DKVK 462 (868)
Q Consensus 390 ~~~~~~~~~~li~~~~~~g~-----~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~--~~~~ 462 (868)
.--....+..+..+...+.+ ..-....+++..-.|+......|...+.. ...|.-++..++-..+..- ....
T Consensus 298 hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~ 376 (1088)
T KOG4318|consen 298 HGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSG 376 (1088)
T ss_pred hhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCc
Confidence 00011123333333211111 12222333333333444333444333322 2245555555555544210 0001
Q ss_pred CCeeehhhhHHHHHhc----------------------CChhHHHHHHHHhhcCCCCCCHH-------------------
Q 047992 463 RNTASWNSLIAGYQQL----------------------GQKNNALGVFRKMQSSCFYPNCV------------------- 501 (868)
Q Consensus 463 ~~~~~~~~li~~~~~~----------------------g~~~~A~~~~~~m~~~g~~p~~~------------------- 501 (868)
.++..+..+..-|.+. ....+..++... ..||..
T Consensus 377 ~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~-----lrkns~lr~lv~Lss~Eler~he~~ 451 (1088)
T KOG4318|consen 377 QNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLEN-----LRKNSFLRQLVGLSSTELERSHEPW 451 (1088)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHH-----hCcchHHHHHhhhhHHHHhcccccc
Confidence 1122222222222111 111111111111 122211
Q ss_pred ---------hHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCc------
Q 047992 502 ---------TILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDI------ 566 (868)
Q Consensus 502 ---------t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~------ 566 (868)
.-..++-+|.+.-+..++.+.-+.....-+ ...|..||+....-..+++|....+++..+|.
T Consensus 452 ~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~ 528 (1088)
T KOG4318|consen 452 PLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDL 528 (1088)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhccc
Confidence 112222333333333333322222222111 25688999999999999999999999987754
Q ss_pred eecHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCC-HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHH
Q 047992 567 ITWNSLICGYVLHGFWHAALDLFDQMKSFG-LKPN-RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMI 644 (868)
Q Consensus 567 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 644 (868)
.-+..+...+.+++....+..++++|.+.- ..|+ ..++-.+++.-...|+.+.-.+.++-+.. +|+.-+ .-++
T Consensus 529 ~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvs-lgl~et----gPl~ 603 (1088)
T KOG4318|consen 529 PLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVS-LGLSET----GPLW 603 (1088)
T ss_pred HhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHH-hhhhhc----ccce
Confidence 357788888999999999999999998743 3343 47778888888899999888888887665 454332 3344
Q ss_pred HhhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc--CCHHHH------HHHHHHH---------hc--------
Q 047992 645 DLYGRSGKLEEAMEFIEDM--PIEPDSSIWEALLTACRIH--GNIDLA------VLAIERL---------FD-------- 697 (868)
Q Consensus 645 d~l~r~g~~~eA~~~i~~~--~~~p~~~~w~~ll~a~~~~--~~~~~a------~~~~~~~---------~~-------- 697 (868)
...-|.++...|.+..+.- ..+|.+.....+....+++ -+++.+ +..+.+. ++
T Consensus 604 ~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~ 683 (1088)
T KOG4318|consen 604 MVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRN 683 (1088)
T ss_pred EEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccC
Confidence 5556777777777665543 3445444444444444322 122222 2211111 11
Q ss_pred ----------cCC--------CCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 698 ----------LEP--------GDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 698 ----------l~p--------~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
+.| +..+..+-|-..|-..|+|+.|..++.+|.
T Consensus 684 ~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q 734 (1088)
T KOG4318|consen 684 GRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ 734 (1088)
T ss_pred CCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc
Confidence 000 122344557778999999999999998875
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.49 E-value=8.6e-14 Score=145.18 Aligned_cols=256 Identities=18% Similarity=0.234 Sum_probs=111.6
Q ss_pred hHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhch
Q 047992 434 VLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYL 513 (868)
Q Consensus 434 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 513 (868)
.+...+.+.|++++|+++++........+.+...|..+.......++.++|.+.++++...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~------------------ 74 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD------------------ 74 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc------------------
Confidence 34555666667777776664433222123344555555555555666666666666554321
Q ss_pred hchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCCceecHHHHHHHHhcCChHHHHHHHHH
Q 047992 514 VASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS--SKDIITWNSLICGYVLHGFWHAALDLFDQ 591 (868)
Q Consensus 514 ~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 591 (868)
-. ++..+..++.. ...|+.++|.+++...- .++...|..++..+...|+++++.+++++
T Consensus 75 -----------------~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~ 135 (280)
T PF13429_consen 75 -----------------KA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEK 135 (280)
T ss_dssp --------------------------------------------------------------H-HHHTT-HHHHHHHHHH
T ss_pred -----------------cc-ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHH
Confidence 11 34445566666 57888889988887653 45677888888999999999999999999
Q ss_pred HHHCC-CCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC--CCCC
Q 047992 592 MKSFG-LKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM--PIEP 667 (868)
Q Consensus 592 m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~--~~~p 667 (868)
+.... .+++...|..+...+.+.|+.++|...++...+ ..|+ ......++.++...|+.+++.++++.. ..++
T Consensus 136 ~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~ 212 (280)
T PF13429_consen 136 LEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD 212 (280)
T ss_dssp HHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT
T ss_pred HHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC
Confidence 87643 234556667777788899999999999999887 3454 566788999999999999988888776 2245
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 668 DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 668 ~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
|+..|..+..++...|+.+.|...++++++..|+|+.....++.++...|+.++|.++|+..
T Consensus 213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 213 DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 66689999999999999999999999999999999999999999999999999999998754
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.2e-09 Score=111.48 Aligned_cols=356 Identities=13% Similarity=0.153 Sum_probs=203.4
Q ss_pred ccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHH--
Q 047992 255 KLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTIT-- 332 (868)
Q Consensus 255 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-- 332 (868)
.-|...+-...-.+-+.|....|+..|...... -+..|.+.+...--.-+.+.+..+- .+.+.|...+.
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~-----~~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILV-----VGLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHH-----hcCcccchHHHHH
Confidence 334444444444556678888888888887754 3445555444333222222222221 22222222221
Q ss_pred HHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCe------ehHHHHHHHHHh
Q 047992 333 SAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDV------YSWNSMIAGYCQ 406 (868)
Q Consensus 333 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~------~~~~~li~~~~~ 406 (868)
.+..++....+.+++.+-.......|++.....-+.....+-...+++.|+.+|+.+...|+ .+|+..+ |.+
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~ 309 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHH
Confidence 24456677778888888888888889888888777777777788899999999998886533 3444443 222
Q ss_pred cCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHH
Q 047992 407 AGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALG 486 (868)
Q Consensus 407 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 486 (868)
+.+.. +..+.+-...=-+--+.|...+.+-|+-.++.+.|...|++..+.+ |.....|+.|..-|...++...|.+
T Consensus 310 ~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 310 NDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHH
Confidence 22111 1111111100002233455566666777777777777777776654 5556667777777777777777777
Q ss_pred HHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---C
Q 047992 487 VFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---S 563 (868)
Q Consensus 487 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~ 563 (868)
-++...+ +.| .|-..|-.|.++|.-.+...-|+-.|++.. +
T Consensus 386 sYRrAvd--i~p----------------------------------~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP 429 (559)
T KOG1155|consen 386 SYRRAVD--INP----------------------------------RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP 429 (559)
T ss_pred HHHHHHh--cCc----------------------------------hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC
Confidence 7766643 111 144455566666666666666666666432 4
Q ss_pred CCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhc---C-CCC-Chh
Q 047992 564 KDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECY---Q-IIP-MIE 638 (868)
Q Consensus 564 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~-~~p-~~~ 638 (868)
.|...|.+|...|.+.++.++|++-|.+....|- .+...+..+...+-..++.++|.++|..-.+.. | +.| ..+
T Consensus 430 nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~k 508 (559)
T KOG1155|consen 430 NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIK 508 (559)
T ss_pred CchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 5666666666666666666666666666665432 244556666666666666666666666544432 1 222 222
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHh
Q 047992 639 HYSAMIDLYGRSGKLEEAMEFIED 662 (868)
Q Consensus 639 ~y~~lvd~l~r~g~~~eA~~~i~~ 662 (868)
...-+..-+-+.+++++|..+...
T Consensus 509 a~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 509 ARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHH
Confidence 222233444455566665554443
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=5.7e-10 Score=114.50 Aligned_cols=208 Identities=15% Similarity=0.151 Sum_probs=171.7
Q ss_pred hchHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHH
Q 047992 514 VASNKVKEIHGCVLRRSLES-SLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLF 589 (868)
Q Consensus 514 ~~~~~~~~i~~~~~~~~~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~ 589 (868)
|+...+.+-+..+++ +.| ++..|--+..+|....+-++-.+.|+... +.|...|---...+.-.+++++|+.=|
T Consensus 340 g~~~~a~~d~~~~I~--l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIK--LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred CCchhhhhhHHHHHh--cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 666777777777777 444 34447777888999999999999998654 556777777777777888999999999
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC
Q 047992 590 DQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP 667 (868)
Q Consensus 590 ~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p 667 (868)
++.+. +.|+. ..|..+-.+..+.+.+++....|+..++++.- .++.|+-....|.-.++++.|.+.++.. .++|
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~--~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN--CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99998 88876 78888888888999999999999999986544 4566888999999999999999999987 4555
Q ss_pred C---------HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHH
Q 047992 668 D---------SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKL 728 (868)
Q Consensus 668 ~---------~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 728 (868)
+ +.+..+++-.- -.+|+..|+...++++++||...-+|..|+.+-...|+.++|.++.+.
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred ccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4 34555555443 349999999999999999999999999999999999999999998654
No 40
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=3.6e-09 Score=108.10 Aligned_cols=488 Identities=14% Similarity=0.136 Sum_probs=293.3
Q ss_pred cCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccCh-hhHHHHHHHHHhcCChHHHHHH
Q 047992 205 CGKLIWARRFFESMDE---KDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGV-VTFNILIRSYNQLGQCDVAMEM 280 (868)
Q Consensus 205 ~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~ 280 (868)
.+++..|+.+|++... ++...|--.+..=.++..+..|..++++.... -|-+ ..|-.-+.+=-..|++..|.++
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 4566778888877654 35667777777777888888888888877653 2222 2344445555567888888888
Q ss_pred HHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHh-CC
Q 047992 281 VKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKM-GF 359 (868)
Q Consensus 281 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~ 359 (868)
|+.-.+. .|+...|++.|.-=.+....+.|..+|++..- +.|+..+|..-.+.=.+.|+...++.++..+++. |-
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 8776654 67888888888888888888888888888753 4477777777777777778888888888777654 21
Q ss_pred -CCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCC-----CeehHHHHHHHHHhcCC---hhHHHH-----HHHHhHhCCC
Q 047992 360 -TDDVLVGNSLINMYSKCEELEAAERVFDMIKDK-----DVYSWNSMIAGYCQAGY---CGKAYE-----LFIKMQESDV 425 (868)
Q Consensus 360 -~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~-----~~~~~~~li~~~~~~g~---~~~A~~-----l~~~m~~~g~ 425 (868)
..+..++++....-.++..++.|.-+|+-..+. ....|.....---+-|+ .++++- -++.+.+.+
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n- 318 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN- 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-
Confidence 122335555555666677788888777654431 12223333333333344 223322 233333333
Q ss_pred CCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCC--eeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhH
Q 047992 426 PPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRN--TASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTI 503 (868)
Q Consensus 426 ~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 503 (868)
+.|-.+|--.+..-...|+.+...++|++....- ||- -..|...|-....- .+|.+
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv--pp~~ekr~W~RYIYLWinY-------alyeE------------- 376 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV--PPASEKRYWRRYIYLWINY-------ALYEE------------- 376 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC--CchhHHHHHHHHHHHHHHH-------HHHHH-------------
Confidence 4455666666666666677777777777665542 331 12333333222110 00000
Q ss_pred HHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHH----HhcCCHHHHHHHHhcCC--CCCceecHHHHHHHH
Q 047992 504 LSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTY----AKSGNIVYSRTIFDGMS--SKDIITWNSLICGYV 577 (868)
Q Consensus 504 ~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y----~k~g~~~~A~~~f~~~~--~~d~~~~~~li~~~~ 577 (868)
....+.+..++++...++ -++...+++.-+=-|| .++-++..|++++-... .|-...+...|..-.
T Consensus 377 -------le~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelEl 448 (677)
T KOG1915|consen 377 -------LEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELEL 448 (677)
T ss_pred -------HHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence 122344444555544444 1222333333333333 34566666666665433 244445555666666
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHH
Q 047992 578 LHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEA 656 (868)
Q Consensus 578 ~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA 656 (868)
+.+.++....++++.++ ..|.. .+|.....--...|+.|.|+.+|+...+...+.--.-.+-..||.-...|.++.|
T Consensus 449 qL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~eka 526 (677)
T KOG1915|consen 449 QLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKA 526 (677)
T ss_pred HHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHH
Confidence 77777777777777777 55643 6676666666677888888888887766433322233566777777788888888
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHhc----cCCCCchhHH--HHHHHH
Q 047992 657 MEFIEDM-PIEPDSSIWEALLTACR-----IHG-----------NIDLAVLAIERLFD----LEPGDVLIQR--LILQIY 713 (868)
Q Consensus 657 ~~~i~~~-~~~p~~~~w~~ll~a~~-----~~~-----------~~~~a~~~~~~~~~----l~p~~~~~~~--~l~~~y 713 (868)
.+++++. .-.+...+|-+...--. ..+ ++..|..+++++.. .+|....... .+-|+-
T Consensus 527 R~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E 606 (677)
T KOG1915|consen 527 RALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNME 606 (677)
T ss_pred HHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 8888877 33444557777654322 233 67788888888764 4554333322 345566
Q ss_pred hhcCCChhHHHHHHHHHh
Q 047992 714 AICGKPEDALKVRKLERE 731 (868)
Q Consensus 714 ~~~g~~~~a~~~~~~m~~ 731 (868)
..-|.-.+...|.+.|-.
T Consensus 607 ~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 607 ETFGTEGDVERVQSKMPK 624 (677)
T ss_pred HhcCchhhHHHHHHhccH
Confidence 777888888888888853
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.40 E-value=6e-11 Score=129.62 Aligned_cols=286 Identities=12% Similarity=0.019 Sum_probs=180.7
Q ss_pred CCCHHHHHHHHHhcCCC--C-eehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehh--hHHHHHHhcCCHHHHHH
Q 047992 376 CEELEAAERVFDMIKDK--D-VYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWN--VLISGYIQNGNEDEAVD 450 (868)
Q Consensus 376 ~g~~~~A~~vf~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~li~~~~~~g~~~~A~~ 450 (868)
.|+++.|++.+....+. + ...+-.......+.|+++.|.+.|.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 58888888877765543 1 222322334447788888898888888764 44543332 33567888999999999
Q ss_pred HHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhC
Q 047992 451 LFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRS 530 (868)
Q Consensus 451 ~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~ 530 (868)
.++.+.+.. |.++.....+...|.+.|++++|.+++..+.+.+..++.. ...+-.
T Consensus 175 ~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~-~~~l~~---------------------- 229 (398)
T PRK10747 175 GVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH-RAMLEQ---------------------- 229 (398)
T ss_pred HHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH-HHHHHH----------------------
Confidence 999987765 6667778888899999999999999999988766543221 110000
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047992 531 LESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSI 607 (868)
Q Consensus 531 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 607 (868)
..+..++....+..+.+...++++.++ ++++..+..+..++...|+.++|.+++++..+ ..||.. ..+
T Consensus 230 -----~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~--l~~ 300 (398)
T PRK10747 230 -----QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDER--LVL 300 (398)
T ss_pred -----HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHH--HHH
Confidence 011112222222233444455555443 23555666666667777777777777776666 334431 112
Q ss_pred HHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHH
Q 047992 608 ILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSSIWEALLTACRIHGNID 686 (868)
Q Consensus 608 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~~w~~ll~a~~~~~~~~ 686 (868)
+.+....|+.+++++..+...+.++-.| +.+.++..++.+.|++++|.+.++++ ...|+...+..|..++...|+.+
T Consensus 301 l~~~l~~~~~~~al~~~e~~lk~~P~~~--~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~ 378 (398)
T PRK10747 301 LIPRLKTNNPEQLEKVLRQQIKQHGDTP--LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPE 378 (398)
T ss_pred HHhhccCCChHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH
Confidence 3333344677777777777666443333 34666777777777777777777776 56677777777777777777777
Q ss_pred HHHHHHHHHhccC
Q 047992 687 LAVLAIERLFDLE 699 (868)
Q Consensus 687 ~a~~~~~~~~~l~ 699 (868)
.|...+++.+++-
T Consensus 379 ~A~~~~~~~l~~~ 391 (398)
T PRK10747 379 EAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHhhh
Confidence 7777777777654
No 42
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=1.7e-08 Score=103.31 Aligned_cols=423 Identities=12% Similarity=0.108 Sum_probs=212.4
Q ss_pred hCCChhHHHHHHHHHhhcCCCCCcccHHHHHHHHhccCChHHHHHHHHHhhhcCCCChhhhhHHHHHHHhcCChhHHHHH
Q 047992 34 GNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFLNLVTEIDVFVKTKLLSVYAKCGCLDDAREV 113 (868)
Q Consensus 34 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 113 (868)
.++....|..+|++.+.-.. -+...+..-+..-.+.+.+..|+.++++..+-++.-..++...+.+=-..|++..|+++
T Consensus 85 sq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 34444456666666654432 13333444444444566777777777777333444445566666666677788888888
Q ss_pred HhhcC--CCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHh-CCC-
Q 047992 114 FEDMR--ERNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKL-GMS- 189 (868)
Q Consensus 114 f~~~~--~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~- 189 (868)
|+.-. +|+...|++.|.-=.+.+.++.|.++|++..- +.|+..+|.--.+-=-+.|....+++++..++.. |-+
T Consensus 164 ferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 164 FERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 87643 57777888888777777777888888877764 3477777766666666777777777777776653 210
Q ss_pred CCcchHHHHHHHHHHcCChHHHHHHHhh----cCCCC-hhhHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCccChhhH
Q 047992 190 CVRRVRNSVLAVYVKCGKLIWARRFFES----MDEKD-GVAWNSMISGYFQIGEN---DEAHRLFDKMCREEIKLGVVTF 261 (868)
Q Consensus 190 ~~~~~~~~li~~y~~~g~~~~A~~~f~~----~~~~d-~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~p~~~~~ 261 (868)
.+..++++....=.++..++.|+-+|.- +|... ...|......=-+.|+. ++++--=+++
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~------------ 309 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF------------ 309 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh------------
Confidence 1112223333333344555555555432 22221 12222222222222322 2221111111
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcc-------cHHHH
Q 047992 262 NILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGV-------TITSA 334 (868)
Q Consensus 262 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-------t~~~l 334 (868)
-++.+.+.++- |-.+|--.+..--..|+.+...++|++.. .+++|-.. .|.-+
T Consensus 310 ------------------qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAI-anvpp~~ekr~W~RYIYLWi 369 (677)
T KOG1915|consen 310 ------------------QYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAI-ANVPPASEKRYWRRYIYLWI 369 (677)
T ss_pred ------------------HHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHH-ccCCchhHHHHHHHHHHHHH
Confidence 11222222221 44444444444444455555555555444 33433211 11111
Q ss_pred HHHH---hchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHH----cCCCHHHHHHHHHhcCC--CCeehHHHHHHHHH
Q 047992 335 ISAC---TDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYS----KCEELEAAERVFDMIKD--KDVYSWNSMIAGYC 405 (868)
Q Consensus 335 l~a~---~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~----~~g~~~~A~~vf~~~~~--~~~~~~~~li~~~~ 405 (868)
=-+| ....+.+.+++++...++ -++...+++..+=-+|+ ++.++..|++++..... |-...+...|..-.
T Consensus 370 nYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelEl 448 (677)
T KOG1915|consen 370 NYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELEL 448 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence 1111 223455555555555554 22333344443333332 34555555555544332 33344444555555
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHH
Q 047992 406 QAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNAL 485 (868)
Q Consensus 406 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 485 (868)
+.+.++.+..+++..++-+ +-|..+|......=...|+.+.|..+|+-.............|.+.|+--...|.++.|.
T Consensus 449 qL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR 527 (677)
T KOG1915|consen 449 QLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKAR 527 (677)
T ss_pred HHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHH
Confidence 5555555555555555554 334555555555555556666666666655554433333445555555555566666666
Q ss_pred HHHHHhhc
Q 047992 486 GVFRKMQS 493 (868)
Q Consensus 486 ~~~~~m~~ 493 (868)
.+++++++
T Consensus 528 ~LYerlL~ 535 (677)
T KOG1915|consen 528 ALYERLLD 535 (677)
T ss_pred HHHHHHHH
Confidence 66665543
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=1e-10 Score=118.04 Aligned_cols=452 Identities=15% Similarity=0.158 Sum_probs=252.5
Q ss_pred hhCCCChHHHHHHHHHHHHhCCCCCcc-hHHHHHHHHHHcCChHHHHHHHhhc----CCC----ChhhHHHHHHHHHhcC
Q 047992 167 CGNCGDFEAGKLMHSLVIKLGMSCVRR-VRNSVLAVYVKCGKLIWARRFFESM----DEK----DGVAWNSMISGYFQIG 237 (868)
Q Consensus 167 ~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~f~~~----~~~----d~~~~~~li~~~~~~g 237 (868)
+.......+|...++.+++...-|+.- .--.+.+.|.+...+..|.+++.-. |.- -....|.+--.|.+.|
T Consensus 211 y~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~g 290 (840)
T KOG2003|consen 211 YEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAG 290 (840)
T ss_pred hhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecc
Confidence 333444556666666666665444432 2223445566777777777776543 221 1224555666778889
Q ss_pred ChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeee--------HHHHHHHHHhcC--
Q 047992 238 ENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFT--------WTCMISGFAQNG-- 307 (868)
Q Consensus 238 ~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--------~~~li~~~~~~g-- 307 (868)
.++.|+.-|+...+. .|+..+--.|+-.+.--|+-++..+.|.+|...-..||..- -..|+.--.++.
T Consensus 291 qy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~l 368 (840)
T KOG2003|consen 291 QYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHL 368 (840)
T ss_pred cchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHH
Confidence 999999988887764 57777666666666777888888888888876533332221 122222222221
Q ss_pred ---------ChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCC
Q 047992 308 ---------RTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEE 378 (868)
Q Consensus 308 ---------~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 378 (868)
+.++++-.-.++..--+.||-.. +| +.+.+.+..-.-..+..+..+ .-.-.|.+.|+
T Consensus 369 k~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------g~------dwcle~lk~s~~~~la~dlei--~ka~~~lk~~d 434 (840)
T KOG2003|consen 369 KNMEKENKADAEKAIITAAKIIAPVIAPDFAA------GC------DWCLESLKASQHAELAIDLEI--NKAGELLKNGD 434 (840)
T ss_pred HHHHHhhhhhHHHHHHHHHHHhccccccchhc------cc------HHHHHHHHHhhhhhhhhhhhh--hHHHHHHhccC
Confidence 11222222222222222222110 00 111111111100000111111 11234678899
Q ss_pred HHHHHHHHHhcCCCCeehHHHHH-----HHHHhcC-ChhHHHHHHHHhHhCCCCCCeeehhhHH-----HHHHhcCCHHH
Q 047992 379 LEAAERVFDMIKDKDVYSWNSMI-----AGYCQAG-YCGKAYELFIKMQESDVPPNVITWNVLI-----SGYIQNGNEDE 447 (868)
Q Consensus 379 ~~~A~~vf~~~~~~~~~~~~~li-----~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~li-----~~~~~~g~~~~ 447 (868)
++.|.+++.-...+|..+-++.. --|.+.| ++..|.+.-+... +..-||.-. .....+|+++.
T Consensus 435 ~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~al------n~dryn~~a~~nkgn~~f~ngd~dk 508 (840)
T KOG2003|consen 435 IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIAL------NIDRYNAAALTNKGNIAFANGDLDK 508 (840)
T ss_pred HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHh------cccccCHHHhhcCCceeeecCcHHH
Confidence 99999888887776554433222 2233333 4666666666555 333443322 22234788888
Q ss_pred HHHHHHhcccCCCCCCCeeehhh---hHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHH
Q 047992 448 AVDLFQRMGKNDKVKRNTASWNS---LIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHG 524 (868)
Q Consensus 448 A~~~f~~m~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~ 524 (868)
|.+.+++.... |...-.+ +.-.+-..|+.++|++.|-++..- +..+...+..+.+.+-.+.+..++.+++.
T Consensus 509 a~~~ykeal~n-----dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 509 AAEFYKEALNN-----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred HHHHHHHHHcC-----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 88888887543 2222222 223456778888888888776421 23344455555566666667777766665
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcC-C--CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 047992 525 CVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGM-S--SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR 601 (868)
Q Consensus 525 ~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~-~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 601 (868)
.+.. -++.|+.+.+-|.+.|-+.|+-..|.+..-.- . +-|+.+..-+..-|.....+++|+..|++.-- ++|+.
T Consensus 583 q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~ 659 (840)
T KOG2003|consen 583 QANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQ 659 (840)
T ss_pred Hhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccH
Confidence 5544 14447888888888888888887777664322 1 34554444466667777777888888877766 77777
Q ss_pred HHHHHHHHHh-hccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcC
Q 047992 602 GTFLSIILAH-SLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSG 651 (868)
Q Consensus 602 ~t~~~ll~a~-~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g 651 (868)
+-|-.++..| .++|.+.+|...|+....+ .+.+++...-+|.+.+..|
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrk--fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRK--FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CccchHHHHHHHHHhcccc
Confidence 7776665555 4567777777777766553 3445555555555555554
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.38 E-value=2.3e-10 Score=125.84 Aligned_cols=194 Identities=10% Similarity=-0.027 Sum_probs=119.5
Q ss_pred cCCCHHHHHHHHHhcCCC--C-eehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCee--ehhhHHHHHHhcCCHHHHH
Q 047992 375 KCEELEAAERVFDMIKDK--D-VYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVI--TWNVLISGYIQNGNEDEAV 449 (868)
Q Consensus 375 ~~g~~~~A~~vf~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~li~~~~~~g~~~~A~ 449 (868)
..|+++.|++.+....+. + ...+-.....+.+.|+.+.|.+.+.+..+.. |+.. .-......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHH
Confidence 467777777777665542 1 1223333455666788888888887776542 3432 2233466677788888888
Q ss_pred HHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHh
Q 047992 450 DLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRR 529 (868)
Q Consensus 450 ~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~ 529 (868)
..++.+.+.. |.+...+..+...+.+.|++++|.+++..+.+.++.+.......-..
T Consensus 174 ~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~--------------------- 230 (409)
T TIGR00540 174 HGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQK--------------------- 230 (409)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH---------------------
Confidence 8888887765 55666777888888888888888888888877654322211010000
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 047992 530 SLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSS---KDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRG 602 (868)
Q Consensus 530 ~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 602 (868)
.+..+++.-......+...+.++..+. ++...+..++..+...|+.++|++++++..+ ..||..
T Consensus 231 -------a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~ 297 (409)
T TIGR00540 231 -------AEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDR 297 (409)
T ss_pred -------HHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCcc
Confidence 011111111122233444455555543 4777788888888888888888888888888 456553
No 45
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.37 E-value=8.1e-08 Score=102.11 Aligned_cols=174 Identities=11% Similarity=0.188 Sum_probs=105.1
Q ss_pred hhhhhHHHHHHHhcCChhHHHHHHhhcCC-----CCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHH
Q 047992 91 VFVKTKLLSVYAKCGCLDDAREVFEDMRE-----RNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQ 165 (868)
Q Consensus 91 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~ 165 (868)
+.++-..+....+.|++..-+..|+.... .....|.-.|.-....+-++-++.+|++.++ +.|.. -.--|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk--~~P~~--~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK--VAPEA--REEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh--cCHHH--HHHHHH
Confidence 34565666666777777777777776432 2334577777766677777777777777764 23333 344455
Q ss_pred HhhCCCChHHHHHHHHHHHHh------CCCCCcchHHHHHHHHHHcCChH---HHHHHHhhcCCC--C--hhhHHHHHHH
Q 047992 166 ACGNCGDFEAGKLMHSLVIKL------GMSCVRRVRNSVLAVYVKCGKLI---WARRFFESMDEK--D--GVAWNSMISG 232 (868)
Q Consensus 166 ~~~~~~~~~~a~~~~~~~~~~------g~~~~~~~~~~li~~y~~~g~~~---~A~~~f~~~~~~--d--~~~~~~li~~ 232 (868)
.++..++++++.+.+..++.. ....+...|..+-+..++..+.- ....++..+..+ | ...|++|..-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 566677777777776655432 12345566666666666654332 233344444433 2 3468888888
Q ss_pred HHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHh
Q 047992 233 YFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQ 270 (868)
Q Consensus 233 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~ 270 (868)
|.+.|.++.|.++|++.... ..++.-|+.+.+.|+.
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHH
Confidence 88888888888888776653 2344445555555554
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.34 E-value=2.8e-10 Score=124.33 Aligned_cols=279 Identities=10% Similarity=0.056 Sum_probs=156.8
Q ss_pred cCChHHHHHHHhhcCCC--C-hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhH--HHHHHHHHhcCChHHHHH
Q 047992 205 CGKLIWARRFFESMDEK--D-GVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTF--NILIRSYNQLGQCDVAME 279 (868)
Q Consensus 205 ~g~~~~A~~~f~~~~~~--d-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~A~~ 279 (868)
.|+++.|++.+...+.. + ...|........+.|+++.|.+.+.++.+. .|+.... ......+...|+.++|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 58888888888776554 1 223333344447889999999999998764 4444322 244678888999999999
Q ss_pred HHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcc-------cHHHHHHHHhchhhHHHHHHHHH
Q 047992 280 MVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGV-------TITSAISACTDLKALAMGMEIHS 352 (868)
Q Consensus 280 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-------t~~~ll~a~~~~~~~~~a~~i~~ 352 (868)
.++++.+..+. +......+...|.+.|++++|++++..+.+.+..++.. +|..++.......+.+...+++.
T Consensus 175 ~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999888755 67788888999999999999999999998766543221 11111221112222222233332
Q ss_pred HHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeeh
Q 047992 353 LAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITW 432 (868)
Q Consensus 353 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 432 (868)
.+.+. .+.++.....+...+...|+.++|.++++...+.....--.++.+....++.+++++..+...+.. +-|...+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~ 331 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLW 331 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHH
Confidence 22111 123444555555555555555555555555443222111222333333455555555555555432 1122234
Q ss_pred hhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHh
Q 047992 433 NVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKM 491 (868)
Q Consensus 433 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 491 (868)
..+...+.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+.+++-
T Consensus 332 l~lgrl~~~~~~~~~A~~~le~al~~---~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 332 STLGQLLMKHGEWQEASLAFRAALKQ---RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44455555555555555555555442 344444455555555555555555555543
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=8.2e-11 Score=125.77 Aligned_cols=273 Identities=14% Similarity=0.096 Sum_probs=125.2
Q ss_pred CHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCC----CHHhHHHHHHHHhchhchHHH
Q 047992 444 NEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYP----NCVTILSVLPACAYLVASNKV 519 (868)
Q Consensus 444 ~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~~~~~~~ 519 (868)
+..+|...|..+.... ..+......+..+|...+++++|..+|+...+. .| +..+|.++|--.-+. ++.+
T Consensus 334 ~~~~A~~~~~klp~h~--~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~--~p~rv~~meiyST~LWHLq~~--v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH--YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI--EPYRVKGMEIYSTTLWHLQDE--VALS 407 (638)
T ss_pred HHHHHHHHHHhhHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccchhHHHHHHHHHHhh--HHHH
Confidence 4567777777754432 222233344556677777777777777766542 22 233444443221110 0000
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CceecHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 047992 520 KEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSK---DIITWNSLICGYVLHGFWHAALDLFDQMKSFG 596 (868)
Q Consensus 520 ~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 596 (868)
. +-..+++ --+..+..|-++.++|+-+++.+.|.+.|++..+- ...+|+.+..-+.....++.|..-|+..+.
T Consensus 408 ~-Laq~Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-- 483 (638)
T KOG1126|consen 408 Y-LAQDLID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-- 483 (638)
T ss_pred H-HHHHHHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--
Confidence 0 0000111 01123445555555555555555555555544322 233444444444444555555555555444
Q ss_pred CCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCCh-hHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHH
Q 047992 597 LKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMI-EHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIW 672 (868)
Q Consensus 597 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w 672 (868)
+.|.+ ..|.++...|.+.++.+.|.-+|+...+ |.|.. ....|+...+-+.|+.|+|+++++++ .+.|. +..-
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~ 560 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCK 560 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhH
Confidence 44443 4455555555555555555555554433 44432 22333444445555555555555554 22221 1111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 673 EALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 673 ~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
-.-.......+++++|.+.+|++-++-|+++..|.+|+.+|-..|+.+.|.+-...+
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWA 617 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence 112222233445555555555555555555555555555555555555555544444
No 48
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=7.3e-08 Score=106.86 Aligned_cols=543 Identities=14% Similarity=0.187 Sum_probs=302.5
Q ss_pred hhHHHHHHHhcCChhHHHHHHhhcCC--CCceeHHHH-----HHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHH
Q 047992 94 KTKLLSVYAKCGCLDDAREVFEDMRE--RNLYTWSAM-----IGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQA 166 (868)
Q Consensus 94 ~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~l-----i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~ 166 (868)
...+.+.|.+.|-...|.+.+..+.+ +.++ -+.+ +.+|.-.-.++++++.++.|...+++.|..+..-+..-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vV-hth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVV-HTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHH-HhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 56677889999999999988887753 2221 1111 22344455678899999999988887776554444433
Q ss_pred hhCCCChHHHHHHHHHHHH-----------hCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCC--------------
Q 047992 167 CGNCGDFEAGKLMHSLVIK-----------LGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEK-------------- 221 (868)
Q Consensus 167 ~~~~~~~~~a~~~~~~~~~-----------~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-------------- 221 (868)
+...--.+.-.++|+.... .++..|+.+.-.-|.+.++.|++.+..++..+-.--
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL 767 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL 767 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccc
Confidence 3332223333344443322 135667778888899999999988888877654210
Q ss_pred ----------ChhhHH-------------HHHHHHHhcCChhHHHHHHHHHHHcCCcc-----------ChhhHHHHHHH
Q 047992 222 ----------DGVAWN-------------SMISGYFQIGENDEAHRLFDKMCREEIKL-----------GVVTFNILIRS 267 (868)
Q Consensus 222 ----------d~~~~~-------------~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----------~~~~~~~li~~ 267 (868)
|.+.+- ..|..|.+.=++...-.+...+..-.... ..+.-+-|+.-
T Consensus 768 ~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~E 847 (1666)
T KOG0985|consen 768 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEE 847 (1666)
T ss_pred cccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHH
Confidence 111111 12333333222222222222211111000 00111222333
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHH-H---HHHHHHh----CCccCCc--ccH------
Q 047992 268 YNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQAL-D---LFKEMSF----VGVMPNG--VTI------ 331 (868)
Q Consensus 268 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~-~---l~~~m~~----~g~~pd~--~t~------ 331 (868)
.-+.+++.--...++...+.|.+ |..++|+|...|..+++-.+-. + .|+...- ....|.. ..|
T Consensus 848 vEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD 926 (1666)
T KOG0985|consen 848 VEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCD 926 (1666)
T ss_pred HHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCc
Confidence 34455555566667777777777 8888888888887765433211 1 1111000 0000000 000
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcC-----C-CCeehHHHHHHHHH
Q 047992 332 TSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIK-----D-KDVYSWNSMIAGYC 405 (868)
Q Consensus 332 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~-----~-~~~~~~~~li~~~~ 405 (868)
.-+++.|....-+. ..-+.+++ ..|...|+.++.- .+ .--+.+.++.. + .|+..-+.-+.++.
T Consensus 927 ~elI~vcNeNSlfK---~~aRYlv~---R~D~~LW~~VL~e---~n--~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfM 995 (1666)
T KOG0985|consen 927 LELINVCNENSLFK---SQARYLVE---RSDPDLWAKVLNE---EN--PYRRQLIDQVVQTALPETQDPEEVSVTVKAFM 995 (1666)
T ss_pred HHHHHhcCchhHHH---HHHHHHHh---ccChHHHHHHHhc---cC--hHHHHHHHHHHHhcCCccCChHHHHHHHHHHH
Confidence 11122221111111 01111111 1122333322210 00 00011122111 1 24444555566666
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCeeeh-----hhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCC
Q 047992 406 QAGYCGKAYELFIKMQESDVPPNVITW-----NVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQ 480 (868)
Q Consensus 406 ~~g~~~~A~~l~~~m~~~g~~p~~~t~-----~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~ 480 (868)
..+-..+-+++++++.-.+ +.++= |.||-...+ -+.....+..+++-.-. .| .+......++-
T Consensus 996 tadLp~eLIELLEKIvL~~---S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD--a~------~ia~iai~~~L 1063 (1666)
T KOG0985|consen 996 TADLPNELIELLEKIVLDN---SVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD--AP------DIAEIAIENQL 1063 (1666)
T ss_pred hcCCcHHHHHHHHHHhcCC---cccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC--ch------hHHHHHhhhhH
Confidence 6666666666666655321 22211 222222222 22233334444332111 11 12233344455
Q ss_pred hhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhc
Q 047992 481 KNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDG 560 (868)
Q Consensus 481 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 560 (868)
+++|..+|++. +.+....+.|++ .-|+++.|.+.-++
T Consensus 1064 yEEAF~ifkkf----------------------------------------~~n~~A~~VLie---~i~~ldRA~efAe~ 1100 (1666)
T KOG0985|consen 1064 YEEAFAIFKKF----------------------------------------DMNVSAIQVLIE---NIGSLDRAYEFAER 1100 (1666)
T ss_pred HHHHHHHHHHh----------------------------------------cccHHHHHHHHH---HhhhHHHHHHHHHh
Confidence 55555555543 233333344443 35778888888887
Q ss_pred CCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHH
Q 047992 561 MSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHY 640 (868)
Q Consensus 561 ~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y 640 (868)
..+|. .|+.+..+-.+.|...+|++-|-+. .|...|.-++.++++.|.+++-.+++....+ ..-+|.++
T Consensus 1101 ~n~p~--vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRk-k~~E~~id-- 1169 (1666)
T KOG0985|consen 1101 CNEPA--VWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARK-KVREPYID-- 1169 (1666)
T ss_pred hCChH--HHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH-hhcCccch--
Confidence 76665 4999999999999999999988542 3567899999999999999999999876555 46677775
Q ss_pred HHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCCh
Q 047992 641 SAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPE 720 (868)
Q Consensus 641 ~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 720 (868)
+.++-+|++.+++.|-++++.. ||..-......-|...|.++-|+..+. +.+.|-.|+..+...|.+.
T Consensus 1170 ~eLi~AyAkt~rl~elE~fi~g----pN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ 1237 (1666)
T KOG0985|consen 1170 SELIFAYAKTNRLTELEEFIAG----PNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQ 1237 (1666)
T ss_pred HHHHHHHHHhchHHHHHHHhcC----CCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHH
Confidence 5788999999999999999874 888888889999999999999988875 4577888888888888888
Q ss_pred hHHHHHH
Q 047992 721 DALKVRK 727 (868)
Q Consensus 721 ~a~~~~~ 727 (868)
.|..--+
T Consensus 1238 ~AVD~aR 1244 (1666)
T KOG0985|consen 1238 GAVDAAR 1244 (1666)
T ss_pred HHHHHhh
Confidence 7766433
No 49
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=5.3e-09 Score=109.73 Aligned_cols=195 Identities=15% Similarity=0.112 Sum_probs=154.2
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---ceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047992 531 LESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKD---IITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSI 607 (868)
Q Consensus 531 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 607 (868)
.+..+..|-++.--|--.|++.+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-.+-.+.-+
T Consensus 308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYl 386 (611)
T KOG1173|consen 308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYL 386 (611)
T ss_pred CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHH
Confidence 44467778888888888899999999998765433 458999999999999999999999888772 22234555556
Q ss_pred HHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC--CC------CC-CHHHHHHHHHH
Q 047992 608 ILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM--PI------EP-DSSIWEALLTA 678 (868)
Q Consensus 608 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~--~~------~p-~~~~w~~ll~a 678 (868)
..-|...+..+-|.++|.+.....+..|-+.|+-.+ +....+.+.+|..+|+.. ++ .+ -..+|+.|+.+
T Consensus 387 gmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgv--vay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~ 464 (611)
T KOG1173|consen 387 GMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGV--VAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA 464 (611)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhh--eeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence 667888999999999999887654555555555443 345677888888888765 11 12 23468889999
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHH
Q 047992 679 CRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKL 728 (868)
Q Consensus 679 ~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 728 (868)
||+.+.++.|...+++++.+.|.++.+|..++-+|.-.|+.+.|......
T Consensus 465 ~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 465 YRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999997653
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=4.7e-09 Score=107.29 Aligned_cols=189 Identities=14% Similarity=0.152 Sum_probs=155.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSIIL 609 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~ 609 (868)
.+.+...+.+-|+-.++-+.|...|++.. ++-...|+.|..-|....+...|++-+++.++ +.| |...|.++..
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQ 406 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQ 406 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhH
Confidence 34556667788888899999999998765 45567899999999999999999999999988 677 6689999999
Q ss_pred HhhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHH
Q 047992 610 AHSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDMP--IEPDSSIWEALLTACRIHGNID 686 (868)
Q Consensus 610 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~~--~~p~~~~w~~ll~a~~~~~~~~ 686 (868)
+|.-.++..=|+-+|+...+ ..| |...|..|.++|.+.++++||++-+++.- -..+..++..|...+...++.+
T Consensus 407 aYeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~ 483 (559)
T KOG1155|consen 407 AYEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLN 483 (559)
T ss_pred HHHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHH
Confidence 99999999999999998876 344 45578999999999999999999999872 2234467888899999999999
Q ss_pred HHHHHHHHHhc-------cCCCCchhHHHHHHHHhhcCCChhHHHHHH
Q 047992 687 LAVLAIERLFD-------LEPGDVLIQRLILQIYAICGKPEDALKVRK 727 (868)
Q Consensus 687 ~a~~~~~~~~~-------l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 727 (868)
.|.+.+++-++ .+|+-..+-..|++-+.+.++|++|...-.
T Consensus 484 eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 484 EAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 99999999887 556556677779999999999999987543
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.28 E-value=4e-10 Score=114.29 Aligned_cols=196 Identities=15% Similarity=0.104 Sum_probs=165.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSIIL 609 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~ 609 (868)
....+..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|++.|++..+. .| +...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHH
Confidence 45677888999999999999999999764 345678888999999999999999999999984 44 4466777788
Q ss_pred HhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHH
Q 047992 610 AHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRIHGNIDL 687 (868)
Q Consensus 610 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~~~~ 687 (868)
.+...|++++|..+|+...+..........+..+...+.+.|++++|.+.+++. ...|+ ...|..+...+...|+++.
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 889999999999999998874332334556778889999999999999999987 34444 5578888888999999999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 688 AVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 688 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
|...+++++++.|.++..+..++.++...|++++|....+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998887754
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.27 E-value=1.5e-09 Score=119.39 Aligned_cols=283 Identities=14% Similarity=0.035 Sum_probs=184.8
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCeee-hhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCee--ehhhhHHHHHhcCCh
Q 047992 405 CQAGYCGKAYELFIKMQESDVPPNVIT-WNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTA--SWNSLIAGYQQLGQK 481 (868)
Q Consensus 405 ~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~--~~~~li~~~~~~g~~ 481 (868)
...|+++.|.+.+.+..+.. |+... +-....++.+.|+++.|.+.+.+..+.. |+.. ........+.+.|++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~---p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA---GNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CcCchHHHHHHHHHHHHCCCH
Confidence 45678888888887766542 33322 2333455667788888888887765432 3332 223346666777777
Q ss_pred hHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 047992 482 NNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGM 561 (868)
Q Consensus 482 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~ 561 (868)
++|.+.++.+.+.. | .++.+...+..+|.+.|++++|.+.+..+
T Consensus 170 ~~Al~~l~~l~~~~--P----------------------------------~~~~~l~ll~~~~~~~~d~~~a~~~l~~l 213 (409)
T TIGR00540 170 HAARHGVDKLLEMA--P----------------------------------RHKEVLKLAEEAYIRSGAWQALDDIIDNM 213 (409)
T ss_pred HHHHHHHHHHHHhC--C----------------------------------CCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77777777776431 2 24455666777777777777777777766
Q ss_pred CCCCc---eecH----HHHHHHHhcCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHhhccCChHHHHHHHHHhhhhc
Q 047992 562 SSKDI---ITWN----SLICGYVLHGFWHAALDLFDQMKSFGLK---PNRGTFLSIILAHSLAGMVDLGKKVFCSITECY 631 (868)
Q Consensus 562 ~~~d~---~~~~----~li~~~~~~g~~~~A~~l~~~m~~~g~~---p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 631 (868)
.+..+ ..+. ....++...+..+++.+.+.++.+.... .+...+..+...+...|+.++|.+.++...+..
T Consensus 214 ~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~ 293 (409)
T TIGR00540 214 AKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL 293 (409)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Confidence 53321 1121 1112223334444455566666653211 266777888889999999999999999988754
Q ss_pred CCCCChhHHHHHHHhhhhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--HHhccCCCCchh
Q 047992 632 QIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM----PIEPDSSIWEALLTACRIHGNIDLAVLAIE--RLFDLEPGDVLI 705 (868)
Q Consensus 632 ~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~----~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~--~~~~l~p~~~~~ 705 (868)
.-.+...+.....-.....++.+++.+.+++. |..|+.....+|...|...|+++.|++.++ +.++..|++..
T Consensus 294 pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~- 372 (409)
T TIGR00540 294 GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND- 372 (409)
T ss_pred CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-
Confidence 33332211111111222357788888888776 333433677899999999999999999999 68889997655
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHH
Q 047992 706 QRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 706 ~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
+..|+.+|...|+.++|.++++.-
T Consensus 373 ~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 373 LAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 669999999999999999988753
No 53
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.27 E-value=3.4e-10 Score=121.15 Aligned_cols=243 Identities=19% Similarity=0.154 Sum_probs=117.5
Q ss_pred hhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCC-C-CChhHHHHHHHHHHhcCCHHHHHHHH
Q 047992 481 KNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSL-E-SSLPVMNSLIDTYAKSGNIVYSRTIF 558 (868)
Q Consensus 481 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~-~-~~~~~~~~Li~~y~k~g~~~~A~~~f 558 (868)
..+|+..|..... .+.-......-+-.+|..++++++++.++..+.+..- . .+..+|+..+--.-+.=.+..--+-+
T Consensus 335 ~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 3455555555222 1222223333444555555666666666655544211 0 13344443332221111111111111
Q ss_pred hcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCCh
Q 047992 559 DGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMI 637 (868)
Q Consensus 559 ~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 637 (868)
-.+.+..+.+|-++...|.-+++.+.|++.|++.++ +.| ...+|+-+..-.......|.|..+|+... ..+.
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~~~ 486 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GVDP 486 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cCCc
Confidence 112233445566666666666666666666666555 455 33455444444455555555666555432 2444
Q ss_pred hHHHHH---HHhhhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 047992 638 EHYSAM---IDLYGRSGKLEEAMEFIEDM-PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQI 712 (868)
Q Consensus 638 ~~y~~l---vd~l~r~g~~~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 712 (868)
.||+++ .-.|.|.++++.|+-.|+++ .+.|... +...+...+...|..|+|.+.+++++.+||.|+-.-+..+.+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI 566 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 444443 23455566666666555555 4555433 333334444555556666666666666666666555556666
Q ss_pred HhhcCCChhHHHHHHHHHh
Q 047992 713 YAICGKPEDALKVRKLERE 731 (868)
Q Consensus 713 y~~~g~~~~a~~~~~~m~~ 731 (868)
+...++++||..+.+.+++
T Consensus 567 l~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHhhcchHHHHHHHHHHHH
Confidence 6666666666655555554
No 54
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.27 E-value=1.2e-11 Score=129.15 Aligned_cols=255 Identities=20% Similarity=0.238 Sum_probs=80.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCCCCC-CeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHh
Q 047992 399 SMIAGYCQAGYCGKAYELFIKMQESDVPP-NVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQ 477 (868)
Q Consensus 399 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~ 477 (868)
.+...+.+.|++++|++++++......+| |..-|..+...+...++++.|...++++...+ +.++..+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--KANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc-cc
Confidence 45778889999999999997665444234 44455566667778999999999999998765 3355567777777 79
Q ss_pred cCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 047992 478 LGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTI 557 (868)
Q Consensus 478 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~ 557 (868)
.+++++|..++.+..+.. ++... +..++..|.+.|+++++.++
T Consensus 90 ~~~~~~A~~~~~~~~~~~--~~~~~-----------------------------------l~~~l~~~~~~~~~~~~~~~ 132 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERD--GDPRY-----------------------------------LLSALQLYYRLGDYDEAEEL 132 (280)
T ss_dssp -----------------------------------------------------------------H-HHHTT-HHHHHHH
T ss_pred cccccccccccccccccc--cccch-----------------------------------hhHHHHHHHHHhHHHHHHHH
Confidence 999999999887765432 23233 33444555566666666666
Q ss_pred HhcCC-----CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhc
Q 047992 558 FDGMS-----SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECY 631 (868)
Q Consensus 558 f~~~~-----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 631 (868)
++.+. +.+...|..+...+.+.|+.++|++.|++.++ ..|+. .....++..+...|+.+++..++....+..
T Consensus 133 l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~ 210 (280)
T PF13429_consen 133 LEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA 210 (280)
T ss_dssp HHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred HHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 65532 23555666666677777777777777777777 56653 445566666777777777777776666543
Q ss_pred CCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 047992 632 QIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFD 697 (868)
Q Consensus 632 ~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~ 697 (868)
.++...+..+..++...|+.++|...+++. ...| |+.+...+..+....|+.+.|.++.+++++
T Consensus 211 --~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 211 --PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp --HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred --cCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 333344566677777777777777777776 3334 455666666777777777777777776654
No 55
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.23 E-value=1.3e-07 Score=103.17 Aligned_cols=427 Identities=16% Similarity=0.130 Sum_probs=233.0
Q ss_pred HcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCc-c
Q 047992 251 REEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNG-V 329 (868)
Q Consensus 251 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~ 329 (868)
...+..|...|..|.-+...+|+++.+.+.|++....-+. ....|+.+-..|...|.-..|..++++-....-.|+. .
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 3344556667777777777777777777777776543222 4566777777788888877888877776433322333 3
Q ss_pred cHHHHHHHHh-chhhHHHHHHHHHHHHHh--CC--CCCccHHHHHHHHHHcC----C-------CHHHHHHHHHhcCC--
Q 047992 330 TITSAISACT-DLKALAMGMEIHSLAVKM--GF--TDDVLVGNSLINMYSKC----E-------ELEAAERVFDMIKD-- 391 (868)
Q Consensus 330 t~~~ll~a~~-~~~~~~~a~~i~~~~~~~--g~--~~~~~~~~~li~~y~~~----g-------~~~~A~~vf~~~~~-- 391 (868)
.+...-+.|. +.+..+++...-..++.. +. ......+-.+.-+|+.. . ...++.+.+++..+
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 3333333343 455666666555555542 11 11122233333333221 1 12233344444432
Q ss_pred -CCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhh
Q 047992 392 -KDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNS 470 (868)
Q Consensus 392 -~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ 470 (868)
.|+.+.--+.--|+..++.+.|++..++..+.+-.-+...|..|.-.+.-.+++.+|+.+.+...... +.|......
T Consensus 475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~--~~N~~l~~~ 552 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF--GDNHVLMDG 552 (799)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--hhhhhhchh
Confidence 23323333333456666677777777777666545566666666666666777777777766654432 112211112
Q ss_pred hHHHHHhcCChhHHHHHHHHhhcC--CCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 047992 471 LIAGYQQLGQKNNALGVFRKMQSS--CFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKS 548 (868)
Q Consensus 471 li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~ 548 (868)
-+..-..-++.++|+.....+... ...|-. ..
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q----------------------------------------------~~ 586 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQ----------------------------------------------QT 586 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHh----------------------------------------------hh
Confidence 222223345555555554444310 000000 00
Q ss_pred CCHHHHHHHHhcCC-----CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--------HHHHHHHHHhhccC
Q 047992 549 GNIVYSRTIFDGMS-----SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR--------GTFLSIILAHSLAG 615 (868)
Q Consensus 549 g~~~~A~~~f~~~~-----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--------~t~~~ll~a~~~~g 615 (868)
|+-....+.+..+. ..|.++-..-+.+... -+.+.+..-.. |...-+.|.. ..|......+...+
T Consensus 587 ~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a-~~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~ 664 (799)
T KOG4162|consen 587 LDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA-SQLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSG 664 (799)
T ss_pred hhhhhhhhhhcccccCcccccccchhhHHHHHHHH-hhhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcC
Confidence 11111122222211 1122211111222221 11111100000 1111122221 12334445667777
Q ss_pred ChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHH--
Q 047992 616 MVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSS-IWEALLTACRIHGNIDLAVL-- 690 (868)
Q Consensus 616 ~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~~~~~~a~~-- 690 (868)
..++|+..+..... +.|. ...|.-..+++...|.++||.+.|... .+.||.+ +..+|...+..-|+-..|+.
T Consensus 665 ~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~ 741 (799)
T KOG4162|consen 665 NDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRS 741 (799)
T ss_pred CchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHH
Confidence 88888766665544 3332 234555667888899999999988877 7788877 67777777888899888888
Q ss_pred HHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 691 AIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 691 ~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
....++++||.|+.+|..|+.+.-+.|+.+.|.+-...--+
T Consensus 742 ~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 742 LLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998776544
No 56
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.22 E-value=8e-07 Score=94.80 Aligned_cols=537 Identities=15% Similarity=0.175 Sum_probs=296.1
Q ss_pred hHHhhHHHHhccCCCCcchHHHHHHHHhCCChhHHHHHHHHHhhcCCCCCcccHHHHHHHHhccCChHHHHHHHHHh-hh
Q 047992 7 TTFQQLHSLLTKKSNPRFRDTHLDFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFL-NL 85 (868)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~-~~ 85 (868)
+.|+++.+.++...|.++|...+......|-++-++.+|++.++-. +..-..-+.-++..++.+.+.+.++.+ ..
T Consensus 123 ~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L~~~d~~~eaa~~la~vln~ 198 (835)
T KOG2047|consen 123 RTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYLAKSDRLDEAAQRLATVLNQ 198 (835)
T ss_pred HHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHHHhccchHHHHHHHHHhcCc
Confidence 4667777777888888899999998888888888888988887653 333445555566678888887777765 21
Q ss_pred ------cCCCChhhhhHHHHHHHhcCChh---HHHHHHhhcCC--CC--ceeHHHHHHHHHhCCChhHHHHHHHHhHHCC
Q 047992 86 ------VTEIDVFVKTKLLSVYAKCGCLD---DAREVFEDMRE--RN--LYTWSAMIGAYSRDQRWREVVELFFLMVQDG 152 (868)
Q Consensus 86 ------~~~~~~~~~~~li~~~~~~g~~~---~A~~~f~~~~~--~~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g 152 (868)
....+..++.-+-+..++.-+.- ....++..+.. +| ...|++|..-|.+.|.++.|.++|++..+.
T Consensus 199 d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~- 277 (835)
T KOG2047|consen 199 DEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT- 277 (835)
T ss_pred hhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-
Confidence 12334455555555555543322 23334444432 22 357999999999999999999999887653
Q ss_pred CCCCcchHHHHHHHhhCCCChHHHHHHHHHHH-HhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCC-----------
Q 047992 153 LFPDDFLFPKILQACGNCGDFEAGKLMHSLVI-KLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDE----------- 220 (868)
Q Consensus 153 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----------- 220 (868)
.....-|..+..+++.-.....+..+- ... +.|-+.+.. +++-...-|+.+..
T Consensus 278 -v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~-------------dl~~~~a~~e~lm~rr~~~lNsVlL 342 (835)
T KOG2047|consen 278 -VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDV-------------DLELHMARFESLMNRRPLLLNSVLL 342 (835)
T ss_pred -heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhh-------------hHHHHHHHHHHHHhccchHHHHHHH
Confidence 234445666666665432221111111 000 111111111 12222223333221
Q ss_pred ----CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcc------ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 047992 221 ----KDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKL------GVVTFNILIRSYNQLGQCDVAMEMVKRMESLGIT 290 (868)
Q Consensus 221 ----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 290 (868)
.++..|..-+.. ..|+..+-...|.+.... +.| -...|-.+...|-..|+++.|..+|++..+-..+
T Consensus 343 RQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred hcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 245566554443 356777888888887653 223 2346888889999999999999999998876433
Q ss_pred CC---eeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHH
Q 047992 291 PD---VFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGN 367 (868)
Q Consensus 291 p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 367 (868)
-- ..+|......=.+..+++.|+++++..... |.... +..+ ..+..-++ .+ ..+..+|.
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v---P~~~~----~~~y-d~~~pvQ~-rl---------hrSlkiWs 481 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV---PTNPE----LEYY-DNSEPVQA-RL---------HRSLKIWS 481 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC---CCchh----hhhh-cCCCcHHH-HH---------HHhHHHHH
Confidence 21 344555555566778899999988877432 22211 1111 11110000 00 11223444
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHH---HHHhcCChhHHHHHHHHhHhCCCCCCe-eehhhHHHHHHh--
Q 047992 368 SLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIA---GYCQAGYCGKAYELFIKMQESDVPPNV-ITWNVLISGYIQ-- 441 (868)
Q Consensus 368 ~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~li~~~~~-- 441 (868)
..++.--.+|-++....+++++.+--+.|=..++. -+-.+.-++++.+.|++=+..=..|+. ..|++.+.-+.+
T Consensus 482 ~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ry 561 (835)
T KOG2047|consen 482 MYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRY 561 (835)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHh
Confidence 44444445555555555555554422222111111 112233345555555443322222322 233433333322
Q ss_pred -cCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHH----HhcCChhHHHHHHHHhhcCCCCCC--HHhHHHHHHHHhchh
Q 047992 442 -NGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGY----QQLGQKNNALGVFRKMQSSCFYPN--CVTILSVLPACAYLV 514 (868)
Q Consensus 442 -~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~~ 514 (868)
...++.|..+|++..+.. ||.. -.++--.| -..|....|+.++++... ++++. ...|+..+.-.+..=
T Consensus 562 gg~klEraRdLFEqaL~~C--pp~~--aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~y 636 (835)
T KOG2047|consen 562 GGTKLERARDLFEQALDGC--PPEH--AKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIY 636 (835)
T ss_pred cCCCHHHHHHHHHHHHhcC--CHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHh
Confidence 224555555555555522 1111 11111112 224555666666666432 34443 234555555555555
Q ss_pred chHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHhc---CCCC--CceecHHHHHHHHhcCChHHHHH
Q 047992 515 ASNKVKEIHGCVLRRSLESS--LPVMNSLIDTYAKSGNIVYSRTIFDG---MSSK--DIITWNSLICGYVLHGFWHAALD 587 (868)
Q Consensus 515 ~~~~~~~i~~~~~~~~~~~~--~~~~~~Li~~y~k~g~~~~A~~~f~~---~~~~--d~~~~~~li~~~~~~g~~~~A~~ 587 (868)
.+...+.+++..++. ++.+ ....--..++=.+.|.++.|+.++.- +.+| +...|.+-=.--.+||+ .+
T Consensus 637 Gv~~TR~iYekaIe~-Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn----ed 711 (835)
T KOG2047|consen 637 GVPRTREIYEKAIES-LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN----ED 711 (835)
T ss_pred CCcccHHHHHHHHHh-CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC----HH
Confidence 566778888888875 2221 23345568888999999999999974 3333 56678888777889999 34
Q ss_pred HHHHHHH
Q 047992 588 LFDQMKS 594 (868)
Q Consensus 588 l~~~m~~ 594 (868)
.+++|++
T Consensus 712 T~keMLR 718 (835)
T KOG2047|consen 712 TYKEMLR 718 (835)
T ss_pred HHHHHHH
Confidence 5556654
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=8.9e-08 Score=100.78 Aligned_cols=284 Identities=16% Similarity=0.099 Sum_probs=209.3
Q ss_pred CeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHH
Q 047992 292 DVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLIN 371 (868)
Q Consensus 292 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 371 (868)
|....-.-..-+...+++.+.+++++...+ ..++....+..-|.++..+|+...-..+-..+++. .+....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle-~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLE-KDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHh-hCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 455555556667777888888888888763 34555566666666666777766655555555554 3556778888888
Q ss_pred HHHcCCCHHHHHHHHHhcCCC---CeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHH
Q 047992 372 MYSKCEELEAAERVFDMIKDK---DVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEA 448 (868)
Q Consensus 372 ~y~~~g~~~~A~~vf~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 448 (868)
.|.-.|+..+|++.|.....- =...|-.....|+-.|..++|+..+...-+.= +-..-.+--+.--|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHH
Confidence 888889999999999876543 34579999999999999999998887665431 11222233344457889999999
Q ss_pred HHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHH
Q 047992 449 VDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLR 528 (868)
Q Consensus 449 ~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~ 528 (868)
.+.|.+..... |.|+...+-+.-.....+.+.+|..+|+..... .++ +..
T Consensus 400 e~Ff~~A~ai~--P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~--ik~--------------------------~~~ 449 (611)
T KOG1173|consen 400 EKFFKQALAIA--PSDPLVLHELGVVAYTYEEYPEALKYFQKALEV--IKS--------------------------VLN 449 (611)
T ss_pred HHHHHHHHhcC--CCcchhhhhhhheeehHhhhHHHHHHHHHHHHH--hhh--------------------------ccc
Confidence 99999887654 667778888888888888999999998876510 000 000
Q ss_pred hCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 047992 529 RSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGM---SSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFL 605 (868)
Q Consensus 529 ~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~---~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 605 (868)
. ...-..+.+.|...|.|++..++|...|++. .++|+.++.++.-.|...|+.+.|++.|.+.+. ++||..+-.
T Consensus 450 e-~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~ 526 (611)
T KOG1173|consen 450 E-KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFIS 526 (611)
T ss_pred c-ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHH
Confidence 0 0023456788999999999999999999964 478899999999999999999999999999988 899998877
Q ss_pred HHHHHh
Q 047992 606 SIILAH 611 (868)
Q Consensus 606 ~ll~a~ 611 (868)
.+|.-+
T Consensus 527 ~lL~~a 532 (611)
T KOG1173|consen 527 ELLKLA 532 (611)
T ss_pred HHHHHH
Confidence 777543
No 58
>PF13041 PPR_2: PPR repeat family
Probab=99.16 E-value=5.8e-11 Score=86.54 Aligned_cols=50 Identities=38% Similarity=0.634 Sum_probs=48.0
Q ss_pred CCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047992 564 KDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSL 613 (868)
Q Consensus 564 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 613 (868)
||+++||++|.+|+++|+.++|+++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.16 E-value=1.7e-09 Score=123.50 Aligned_cols=204 Identities=13% Similarity=0.035 Sum_probs=153.2
Q ss_pred hHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHH
Q 047992 516 SNKVKEIHGCVLRRSLES-SLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQ 591 (868)
Q Consensus 516 ~~~~~~i~~~~~~~~~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 591 (868)
.+.|......+++ ++| +...+..+..++...|++++|...|++.. +.+...|..+...+...|++++|+..+++
T Consensus 320 ~~~A~~~~~~Al~--ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 320 MIKAKEHAIKATE--LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455555555555 444 66777888889999999999999999765 34566888899999999999999999999
Q ss_pred HHHCCCCCCHH-HHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC
Q 047992 592 MKSFGLKPNRG-TFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD 668 (868)
Q Consensus 592 m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~ 668 (868)
..+ +.|+.. .+...+.++...|+.++|...++..... ..|+ ...+..+..+|...|++++|.+.+++. +..|+
T Consensus 398 Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 398 CLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT 473 (553)
T ss_pred HHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence 999 677653 3334445566789999999999987653 2343 445677888899999999999999987 66666
Q ss_pred HH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHH
Q 047992 669 SS-IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRK 727 (868)
Q Consensus 669 ~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 727 (868)
.. .++.|...+...| +.|...++++++..-..+.....+..+|+-.|+-+.+...++
T Consensus 474 ~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 531 (553)
T PRK12370 474 GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMWNK 531 (553)
T ss_pred hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHHHH
Confidence 55 4455555556666 588888888887554444455558999999999999888844
No 60
>PF13041 PPR_2: PPR repeat family
Probab=99.15 E-value=6.1e-11 Score=86.42 Aligned_cols=50 Identities=20% Similarity=0.521 Sum_probs=48.4
Q ss_pred CCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhC
Q 047992 120 RNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGN 169 (868)
Q Consensus 120 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 169 (868)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
No 61
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=1.1e-07 Score=93.92 Aligned_cols=215 Identities=16% Similarity=0.149 Sum_probs=108.6
Q ss_pred HHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeeh--hhHHHH-----HHhcCCHHHHHHHH
Q 047992 380 EAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITW--NVLISG-----YIQNGNEDEAVDLF 452 (868)
Q Consensus 380 ~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~li~~-----~~~~g~~~~A~~~f 452 (868)
+.|.+++-.+.+-=+.+--.++--|.+.+++++|..+.+++. +.++.-| -.+..+ ......+.-|.+.|
T Consensus 271 EgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqff 346 (557)
T KOG3785|consen 271 EGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFF 346 (557)
T ss_pred ccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Confidence 455555544443333334445556777788888888777765 2222222 111111 11122355677777
Q ss_pred HhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCC
Q 047992 453 QRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLE 532 (868)
Q Consensus 453 ~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~ 532 (868)
+..-+......++..-.+|.+.+.-..++++.+..++....- +.
T Consensus 347 qlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY------------------------------------F~ 390 (557)
T KOG3785|consen 347 QLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY------------------------------------FT 390 (557)
T ss_pred HHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------hc
Confidence 766655544555555666777776666777766666655432 22
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CceecHHH-HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047992 533 SSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSK---DIITWNSL-ICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSII 608 (868)
Q Consensus 533 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---d~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 608 (868)
.|....-.+.++++..|+..+|.++|-++..+ |-.+|-+| ...|.++|+++-|.+++-++.. ..+..+...++
T Consensus 391 NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlI 467 (557)
T KOG3785|consen 391 NDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLI 467 (557)
T ss_pred CcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHH
Confidence 22222223455555556666666666555432 33444333 3445555666655555443321 12223333322
Q ss_pred -HHhhccCChHHHHHHHHHhhhhcCCCCChhHH
Q 047992 609 -LAHSLAGMVDLGKKVFCSITECYQIIPMIEHY 640 (868)
Q Consensus 609 -~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y 640 (868)
.-|...|..--|-+.|+.+.. ..|+++.|
T Consensus 468 An~CYk~~eFyyaaKAFd~lE~---lDP~pEnW 497 (557)
T KOG3785|consen 468 ANDCYKANEFYYAAKAFDELEI---LDPTPENW 497 (557)
T ss_pred HHHHHHHHHHHHHHHhhhHHHc---cCCCcccc
Confidence 345555655555555554442 45555544
No 62
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.13 E-value=2e-05 Score=85.21 Aligned_cols=530 Identities=15% Similarity=0.143 Sum_probs=258.1
Q ss_pred hCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHH
Q 047992 134 RDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARR 213 (868)
Q Consensus 134 ~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 213 (868)
....|.+|+.+++.+.... .-+.-|..+...|+..|+++.|.+++-.. ...+-.|.||.+.|++++|.+
T Consensus 744 ~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHH
Confidence 4455666677766665432 22345777778888888888888777432 234667888888888888888
Q ss_pred HHhhcCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 047992 214 FFESMDEK--DGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITP 291 (868)
Q Consensus 214 ~f~~~~~~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 291 (868)
+-++...| ..++|-+-..-+-+.|++.+|.+++-... .|+ ..|.+|-+.|..++.+++..+---. .
T Consensus 813 la~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d---~ 880 (1636)
T KOG3616|consen 813 LAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD---H 880 (1636)
T ss_pred HHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChh---h
Confidence 87776555 34456666666677788888777764433 222 3467777777777777766543211 1
Q ss_pred CeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHH--------------HHHHh
Q 047992 292 DVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHS--------------LAVKM 357 (868)
Q Consensus 292 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~--------------~~~~~ 357 (868)
-..|.-.+..-|-..|+...|..-|-+.. -|.+..+.|...+-++.+..+-. .....
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksi 951 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSI 951 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhh
Confidence 12333444555555666666666554432 12333333333333333322211 00111
Q ss_pred CCCCCcc------HHHHHHHHHHcCCCHHHHHHHHHhcC-CCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCee
Q 047992 358 GFTDDVL------VGNSLINMYSKCEELEAAERVFDMIK-DKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVI 430 (868)
Q Consensus 358 g~~~~~~------~~~~li~~y~~~g~~~~A~~vf~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 430 (868)
|-..-+. ....-++.-+..+.++-|..+-+-.. .+-....-.+..-+-..|++++|-+.|-+.++.+. -..
T Consensus 952 ggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklnt--yni 1029 (1636)
T KOG3616|consen 952 GGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNT--YNI 1029 (1636)
T ss_pred CcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhccc--ccc
Confidence 1000000 11122333333444444443332221 12222233344445567888888777776664421 112
Q ss_pred eh-------------------hhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCCh----------
Q 047992 431 TW-------------------NVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQK---------- 481 (868)
Q Consensus 431 t~-------------------~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~---------- 481 (868)
|| ...+.++.+.+++..|.++-+.--... .| ..++.-.++-...|++
T Consensus 1030 twcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~~~~--l~--dv~tgqar~aiee~d~~kae~fllra 1105 (1636)
T KOG3616|consen 1030 TWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHCEDL--LA--DVLTGQARGAIEEGDFLKAEGFLLRA 1105 (1636)
T ss_pred hhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhChhh--hH--HHHhhhhhccccccchhhhhhheeec
Confidence 22 122344555556665555544331110 11 1122222222233333
Q ss_pred ---hHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHH----HHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 047992 482 ---NNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEI----HGCVLRRSLESSLPVMNSLIDTYAKSGNIVYS 554 (868)
Q Consensus 482 ---~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A 554 (868)
+-|+..|.+. ++-||.. +.|-.- -..++..+ -...++.|-. .+..+.+-..-+.+.|++..|
T Consensus 1106 nkp~i~l~yf~e~---~lw~dal------ri~kdy-lp~q~a~iqeeyek~~~k~gar-gvd~fvaqak~weq~gd~rka 1174 (1636)
T KOG3616|consen 1106 NKPDIALNYFIEA---ELWPDAL------RIAKDY-LPHQAAAIQEEYEKEALKKGAR-GVDGFVAQAKEWEQAGDWRKA 1174 (1636)
T ss_pred CCCchHHHHHHHh---ccChHHH------HHHHhh-ChhHHHHHHHHHHHHHHhcccc-ccHHHHHHHHHHHhcccHHHH
Confidence 3333333322 2333321 211110 01111111 1222333322 122233334556677777777
Q ss_pred HHHHhcCCCC---------------------------CceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047992 555 RTIFDGMSSK---------------------------DIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSI 607 (868)
Q Consensus 555 ~~~f~~~~~~---------------------------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 607 (868)
...+-++... |.....+...++...|..+.|.+++--.-. -.-.
T Consensus 1175 v~~~lkinrdst~nd~l~e~~~~kaadl~ikfl~~d~nme~i~aa~~al~~~~~~e~aael~l~f~~---------~kea 1245 (1636)
T KOG3616|consen 1175 VDALLKINRDSTDNDALAEHCTEKAADLSIKFLMGDENMEVIGAAGGALDEAGCHEAAAELLLLFDL---------SKEA 1245 (1636)
T ss_pred HHHHhhhccCCCCcHHHHHHHHHHHHhhhhhhcCCccchhhHHhcchhhhcccccHHHHHHHHHhhh---------HHHH
Confidence 7766655321 111111122222233333444333321110 0112
Q ss_pred HHHhhccCChHHHHHHHHHh---------------hhhcCC---CCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCH
Q 047992 608 ILAHSLAGMVDLGKKVFCSI---------------TECYQI---IPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDS 669 (868)
Q Consensus 608 l~a~~~~g~~~~a~~~~~~m---------------~~~~~~---~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~ 669 (868)
+.|++....+.+|.++-+.. .+..|- --+++. -.-+|++...|++++|++--++-..+|=.
T Consensus 1246 ida~~~~eewakakqvake~~p~~~~~idk~yke~lknegkl~eli~vdv-iaaidl~ien~qwdk~idtak~qnykpil 1324 (1636)
T KOG3616|consen 1246 IDAFCEAEEWAKAKQVAKELDPEMEDEIDKHYKEFLKNEGKLDELIDVDV-IAAIDLMIENDQWDKAIDTAKKQNYKPIL 1324 (1636)
T ss_pred HHHHHhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHhccCccccccchhH-HHHHHHHHhcccHHHHHHHHHhcccHHHH
Confidence 34445555555554443322 111111 011221 23468899999999999998888777766
Q ss_pred HHHHHHHHHHHh-cCCHHHHHHHHHHHh-ccCCCCchhHHHH-HHHHhhcC-CChhH
Q 047992 670 SIWEALLTACRI-HGNIDLAVLAIERLF-DLEPGDVLIQRLI-LQIYAICG-KPEDA 722 (868)
Q Consensus 670 ~~w~~ll~a~~~-~~~~~~a~~~~~~~~-~l~p~~~~~~~~l-~~~y~~~g-~~~~a 722 (868)
.-|-++-.+..+ .|+...+..++++-= -.+|.|-..|-++ -.+.++-| +.+||
T Consensus 1325 ~kyva~yaa~li~~~d~aq~lal~~q~ga~anpanfniyk~i~ed~lakpgt~~~ea 1381 (1636)
T KOG3616|consen 1325 DKYVALYAAHLIHEGDLAQALALLEQHGAPANPANFNIYKLIFEDMLAKPGTNCAEA 1381 (1636)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhCCCCCcccccHHHHHHHHHhcCCCcchHHH
Confidence 666666666544 478888888777653 3567777777554 33555544 44444
No 63
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.10 E-value=3.1e-06 Score=91.22 Aligned_cols=433 Identities=16% Similarity=0.185 Sum_probs=260.7
Q ss_pred HHHHHHHHcCChHHHHHHHhhcCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChH
Q 047992 197 SVLAVYVKCGKLIWARRFFESMDEKDG-VAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCD 275 (868)
Q Consensus 197 ~li~~y~~~g~~~~A~~~f~~~~~~d~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 275 (868)
..|.||....++++|..+-+....|.. ..-.+.+.++...|+-++|-++-. +.----+.|..|.+.|...
T Consensus 562 ~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~---------sdgd~laaiqlyika~~p~ 632 (1636)
T KOG3616|consen 562 EAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELKE---------SDGDGLAAIQLYIKAGKPA 632 (1636)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhcc---------ccCccHHHHHHHHHcCCch
Confidence 456677777777777776655444421 122344455555666666554321 1111234567788888877
Q ss_pred HHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHH
Q 047992 276 VAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAV 355 (868)
Q Consensus 276 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 355 (868)
.|.+....=.. +..|......+..++.+..-+++|-++|+++.. +...+..+.+-..+..+.++-+..
T Consensus 633 ~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarfa- 700 (1636)
T KOG3616|consen 633 KAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFA- 700 (1636)
T ss_pred HHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhh-
Confidence 77655422111 112555666666777777777777777777632 222333333333334444332221
Q ss_pred HhCCCCCcc-HHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhh
Q 047992 356 KMGFTDDVL-VGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNV 434 (868)
Q Consensus 356 ~~g~~~~~~-~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 434 (868)
++..++ .-..-.+-+...|+++.|..-|-+... .-..|.+......+.+|+.+++.++.... -.--|..
T Consensus 701 ---fp~evv~lee~wg~hl~~~~q~daainhfiea~~-----~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~ 770 (1636)
T KOG3616|consen 701 ---FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGE 770 (1636)
T ss_pred ---CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchH
Confidence 111111 111222333345666666655543221 11234455667788888888888886542 2334667
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchh
Q 047992 435 LISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLV 514 (868)
Q Consensus 435 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 514 (868)
+.+-|+..|+++.|.++|.+.- .++--|..|.++|++++|..+-.+.. .|..
T Consensus 771 iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw~da~kla~e~~----~~e~-------------- 822 (1636)
T KOG3616|consen 771 IADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKWEDAFKLAEECH----GPEA-------------- 822 (1636)
T ss_pred HHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccHHHHHHHHHHhc----Cchh--------------
Confidence 7788999999999999987652 35567888999999999988877653 2221
Q ss_pred chHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHH
Q 047992 515 ASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKS 594 (868)
Q Consensus 515 ~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 594 (868)
....|-+-..-.-+.|++.+|.+++-.+..||. .|..|-+||..+..+++.++
T Consensus 823 -------------------t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k--- 875 (1636)
T KOG3616|consen 823 -------------------TISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEK--- 875 (1636)
T ss_pred -------------------HHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHH---
Confidence 222333444455677888888888888877775 46788899999888888776
Q ss_pred CCCCCCH--HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCC---CCC-
Q 047992 595 FGLKPNR--GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPI---EPD- 668 (868)
Q Consensus 595 ~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~---~p~- 668 (868)
..||. .|...+..-+...|++.+|...|-...+ |..-|.+|-.++.+++|..+-+.-.- +..
T Consensus 876 --~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriaktegg~n~~k~v 943 (1636)
T KOG3616|consen 876 --HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHV 943 (1636)
T ss_pred --hChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHH
Confidence 34554 4666666677788899888888776554 67778888889999999888776421 111
Q ss_pred HHHHHHHHHH------HHhcCCHHHHHHHH------HHHhc-----cCCCCchhHHHHHHHHhhcCCChhHHHHHH
Q 047992 669 SSIWEALLTA------CRIHGNIDLAVLAI------ERLFD-----LEPGDVLIQRLILQIYAICGKPEDALKVRK 727 (868)
Q Consensus 669 ~~~w~~ll~a------~~~~~~~~~a~~~~------~~~~~-----l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 727 (868)
...|.--+++ .-+||-++.|...+ +-+++ ....-+..++-|+.-+...|++++|.+-+-
T Consensus 944 ~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyv 1019 (1636)
T KOG3616|consen 944 AFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYV 1019 (1636)
T ss_pred HHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhH
Confidence 1244332221 23455555554322 12222 223346778889999999999999987543
No 64
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=9.2e-08 Score=98.68 Aligned_cols=80 Identities=15% Similarity=0.192 Sum_probs=52.6
Q ss_pred HHHHHhCCChhHHHHHHHHhHHCCCCCC-cchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCC-cchHHHHHHHHHHcC
Q 047992 129 IGAYSRDQRWREVVELFFLMVQDGLFPD-DFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCV-RRVRNSVLAVYVKCG 206 (868)
Q Consensus 129 i~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g 206 (868)
-.-|.++|.+++|+..|...++ ..|| +..|...--++...|+++.+.+--...+... |+ +-++..-..++-..|
T Consensus 122 GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 122 GNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHhhc
Confidence 3456788889999999988886 4688 5555555556677888887776655555443 32 334444555666667
Q ss_pred ChHHHH
Q 047992 207 KLIWAR 212 (868)
Q Consensus 207 ~~~~A~ 212 (868)
++++|.
T Consensus 198 ~~~eal 203 (606)
T KOG0547|consen 198 KFDEAL 203 (606)
T ss_pred cHHHHH
Confidence 666654
No 65
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.06 E-value=1.7e-07 Score=91.91 Aligned_cols=292 Identities=15% Similarity=0.211 Sum_probs=188.1
Q ss_pred cchHHHHHHHHhCCChhHHHHHHHHHhhcCCCCCcccHHHHHHHHhccCChHHHHHHHHHh-hhc-CCCC--hhhhhHHH
Q 047992 23 RFRDTHLDFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFL-NLV-TEID--VFVKTKLL 98 (868)
Q Consensus 23 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~-~~~-~~~~--~~~~~~li 98 (868)
+.|-.-++.+ -+.+++.|.++|-.|.+... .+.++-..|-+.+.+.|..+.|.+||+.+ .+. +..+ ......|.
T Consensus 37 r~Yv~GlNfL-Ls~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~ 114 (389)
T COG2956 37 RDYVKGLNFL-LSNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLG 114 (389)
T ss_pred HHHHhHHHHH-hhcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 3444444543 34789999999999987532 23344455566777889999999999998 332 2222 23456677
Q ss_pred HHHHhcCChhHHHHHHhhcCCCCce---eHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcc----hHHHHHHHhhCCC
Q 047992 99 SVYAKCGCLDDAREVFEDMRERNLY---TWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDF----LFPKILQACGNCG 171 (868)
Q Consensus 99 ~~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~~ 171 (868)
.-|.+.|-++.|..+|....+-+.+ +-..|+..|-...+|++|++.-+++...|-++..+ .|.-+........
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS 194 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh
Confidence 8899999999999999988764443 45678889999999999999999988766555443 3445555555566
Q ss_pred ChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChh----hHHHHHHHHHhcCChhHHHHHHH
Q 047992 172 DFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGV----AWNSMISGYFQIGENDEAHRLFD 247 (868)
Q Consensus 172 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~----~~~~li~~~~~~g~~~~A~~l~~ 247 (868)
+++.|..++....+.. +..+.+.-.+.+.+...|+++.|.+.++.+.+.|.. .-..+..+|.+.|+.++....+.
T Consensus 195 ~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~ 273 (389)
T COG2956 195 DVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR 273 (389)
T ss_pred hHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 7777777777776655 233444455666777777777777777777666543 45666677777777777777777
Q ss_pred HHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhc---CChhHHHHHHHHHHh
Q 047992 248 KMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQN---GRTSQALDLFKEMSF 321 (868)
Q Consensus 248 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~ 321 (868)
++.+... +...-..+-..-....-.+.|...+.+-..+ +|+...+..+|..-... |...+.+.+++.|..
T Consensus 274 ~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 274 RAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 7766432 2223333333333333444444444443333 35666666666554432 334555555555543
No 66
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.05 E-value=9.1e-08 Score=96.85 Aligned_cols=285 Identities=13% Similarity=0.105 Sum_probs=169.4
Q ss_pred CCCHHHHHHHHHhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHH
Q 047992 376 CEELEAAERVFDMIKD---KDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLF 452 (868)
Q Consensus 376 ~g~~~~A~~vf~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f 452 (868)
.|++..|++...+-.+ ..+..|..-+.+--+.|+.+.+-.++.+..+..-.++...+-+........|++..|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4677777777665443 2233344444555666777777777777765532333444455556667778888888777
Q ss_pred HhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCC
Q 047992 453 QRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLE 532 (868)
Q Consensus 453 ~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~ 532 (868)
+++.+.. +.++........+|.+.|++.+.+.++..|.+.|+--|+..-.-
T Consensus 177 ~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l--------------------------- 227 (400)
T COG3071 177 DQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL--------------------------- 227 (400)
T ss_pred HHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH---------------------------
Confidence 7776654 56667777788888888888888888888887776544321100
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047992 533 SSLPVMNSLIDTYAKSGNIVYSRTIFDGMSS---KDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIIL 609 (868)
Q Consensus 533 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 609 (868)
...+++.+++=....+..+.-..-++..+. .++..-.+++.-+.+.|+.++|.++.++..+.+..|+-.++ .
T Consensus 228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~----~ 302 (400)
T COG3071 228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRL----I 302 (400)
T ss_pred -HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHH----H
Confidence 011222333322222333333334444442 23444455566666777777777777777776666552221 1
Q ss_pred HhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047992 610 AHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAV 689 (868)
Q Consensus 610 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~ 689 (868)
.|..-|+.+.= .+-+++-++..|..| ..|.+|...|.+++.+.+|.
T Consensus 303 ~~l~~~d~~~l--------------------------------~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~ 348 (400)
T COG3071 303 PRLRPGDPEPL--------------------------------IKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKAS 348 (400)
T ss_pred hhcCCCCchHH--------------------------------HHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHH
Confidence 22222222222 223334444444444 56777777778888888888
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 690 LAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 690 ~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
.+++.+++..|+ ...|..|+..|.+.|+..+|..+|+.-
T Consensus 349 ~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 349 EALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred HHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 888877777774 566777788888888888777776654
No 67
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.05 E-value=7.9e-08 Score=97.28 Aligned_cols=286 Identities=11% Similarity=0.069 Sum_probs=187.0
Q ss_pred CChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHH
Q 047992 307 GRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVF 386 (868)
Q Consensus 307 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf 386 (868)
|+|.+|.++..+-.+.+-.| ...|.....+....|+.+.+-..+.++.+..-.++..+.-+........|++..|+.-.
T Consensus 98 G~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 44555555544443333222 12233344444555555555555555555433445555555666666677777776665
Q ss_pred HhcC---CCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCe-------eehhhHHHHHHhcCCHHHHHHHHHhcc
Q 047992 387 DMIK---DKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNV-------ITWNVLISGYIQNGNEDEAVDLFQRMG 456 (868)
Q Consensus 387 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~li~~~~~~g~~~~A~~~f~~m~ 456 (868)
+.+. .+++.........|.+.|++.....++..|.+.|.--|+ .+|+.+++-....+..+.-...+++..
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p 256 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP 256 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence 5544 345666777777777777777777777777777654432 456677766666666666666777776
Q ss_pred cCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChh
Q 047992 457 KNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLP 536 (868)
Q Consensus 457 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~ 536 (868)
.+- +.++..-.+++.-+.+.|+.++|.++..+..+.+..|.- ..+-.|...++.+.-.+..+.-++. .+.++.
T Consensus 257 r~l--r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~ 329 (400)
T COG3071 257 RKL--RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPL 329 (400)
T ss_pred HHh--hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHh-CCCChh
Confidence 543 445666677888888999999999999988888777772 2233455566665555555554442 334567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC--CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 047992 537 VMNSLIDTYAKSGNIVYSRTIFDGMS--SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN 600 (868)
Q Consensus 537 ~~~~Li~~y~k~g~~~~A~~~f~~~~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 600 (868)
++.+|...|.|.+.+.+|...|+... .++...|+-+..++.+.|+..+|.+.+++.+..-..|+
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 88888999999999999999988654 56788888888888888988888888888765433443
No 68
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=4.2e-05 Score=85.81 Aligned_cols=560 Identities=13% Similarity=0.160 Sum_probs=283.9
Q ss_pred HHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCCh
Q 047992 129 IGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKL 208 (868)
Q Consensus 129 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 208 (868)
+.+|+..|.+++++-.. .+.|..|| |-.+|+...+ -+.+.+.+....+..... ...-.+.+++.+......
T Consensus 488 i~cfAE~Gqf~KiilY~---kKvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~~~--~~~die~I~DlFme~N~i 558 (1666)
T KOG0985|consen 488 IQCFAETGQFKKIILYA---KKVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQDEE--PLADIEQIVDLFMELNLI 558 (1666)
T ss_pred HHHHHHhcchhHHHHHH---HHcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhccCC--CcccHHHHHHHHHHHHhh
Confidence 33444444444433222 23466666 3344554444 345566665555554321 222334555555555555
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 047992 209 IWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLG 288 (868)
Q Consensus 209 ~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 288 (868)
..+..++-.....|...-..+-.-+... +.-.|-++-+.+...+. -+..-+..+.+.|.+.|-...|++.+..+.+.
T Consensus 559 Qq~TSFLLdaLK~~~Pd~g~LQTrLLE~-NL~~aPqVADAILgN~m-FtHyDra~IAqLCEKAGL~qraLehytDl~DI- 635 (1666)
T KOG0985|consen 559 QQCTSFLLDALKLNSPDEGHLQTRLLEM-NLVHAPQVADAILGNDM-FTHYDRAEIAQLCEKAGLLQRALEHYTDLYDI- 635 (1666)
T ss_pred hhhHHHHHHHhcCCChhhhhHHHHHHHH-HhccchHHHHHHHhccc-cccccHHHHHHHHHhcchHHHHHHhcccHHHH-
Confidence 5555444333332222111111000000 00011122222222211 12233677788899999999999888776542
Q ss_pred CCCCeeeHH-----HHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHH-------
Q 047992 289 ITPDVFTWT-----CMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVK------- 356 (868)
Q Consensus 289 ~~p~~~~~~-----~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~------- 356 (868)
+ ..+..+ -.+-.|.-.-.++.+++.++.|...+++.|..+...+..-|...-..+...++++....
T Consensus 636 -K-R~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yf 713 (1666)
T KOG0985|consen 636 -K-RVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYF 713 (1666)
T ss_pred -H-HHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHH
Confidence 0 111111 12445556667889999999999888888877766665555544444444444443322
Q ss_pred ----hCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCC-------------------C-----CeehHH----------
Q 047992 357 ----MGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKD-------------------K-----DVYSWN---------- 398 (868)
Q Consensus 357 ----~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~-------------------~-----~~~~~~---------- 398 (868)
.++..|+.+.-..|.+-++.|++.+.+++.+.-.- | |..-+-
T Consensus 714 LgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrn 793 (1666)
T KOG0985|consen 714 LGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRN 793 (1666)
T ss_pred HHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHh
Confidence 14567777888899999999999999888764331 0 111111
Q ss_pred ---HHHHHHHhcCChhHHHHHHHHhHhCCCCC-----------CeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCC
Q 047992 399 ---SMIAGYCQAGYCGKAYELFIKMQESDVPP-----------NVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRN 464 (868)
Q Consensus 399 ---~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----------~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~ 464 (868)
..|..|.+.=+..+.-.+...+..-.+.- ..+....|+.-.-+.++..--..+++.....+ ..+
T Consensus 794 n~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG--~~d 871 (1666)
T KOG0985|consen 794 NLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEG--SQD 871 (1666)
T ss_pred hHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhcc--Ccc
Confidence 12333333322222222222222111100 11112334444555666666666777766665 567
Q ss_pred eeehhhhHHHHHhcCChhH-HHH---HHHHhhc----CCCCCCH--H------hHHHHHHHHhchhchHHHHHHHHHHHH
Q 047992 465 TASWNSLIAGYQQLGQKNN-ALG---VFRKMQS----SCFYPNC--V------TILSVLPACAYLVASNKVKEIHGCVLR 528 (868)
Q Consensus 465 ~~~~~~li~~~~~~g~~~~-A~~---~~~~m~~----~g~~p~~--~------t~~~ll~a~~~~~~~~~~~~i~~~~~~ 528 (868)
..++|+|...|...++-.+ -+. .|+...- ..-.|.. + .-.-+++.|-....+. ..-.++++
T Consensus 872 ~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK---~~aRYlv~ 948 (1666)
T KOG0985|consen 872 PATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFK---SQARYLVE 948 (1666)
T ss_pred hHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHH---HHHHHHHh
Confidence 7888888888876554322 111 0000000 0000000 0 0011122221111110 11111111
Q ss_pred hCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcC-----C-CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCC------
Q 047992 529 RSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGM-----S-SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFG------ 596 (868)
Q Consensus 529 ~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~-----~-~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------ 596 (868)
..|..+|+..+.- .-..-+++.++. + ..|+..-+.-..++...+-+.+-++++++..-..
T Consensus 949 ---R~D~~LW~~VL~e-----~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~ 1020 (1666)
T KOG0985|consen 949 ---RSDPDLWAKVLNE-----ENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEN 1020 (1666)
T ss_pred ---ccChHHHHHHHhc-----cChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccc
Confidence 1122222222210 000001111111 1 1344444555667777777777777777765321
Q ss_pred -----------CCCCHH---HHH---------HHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCCh
Q 047992 597 -----------LKPNRG---TFL---------SIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKL 653 (868)
Q Consensus 597 -----------~~p~~~---t~~---------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~ 653 (868)
++.|.. .|. .+...+...++++||..+|+.... +...... +...-|.+
T Consensus 1021 ~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~------n~~A~~V---Lie~i~~l 1091 (1666)
T KOG0985|consen 1021 RNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDM------NVSAIQV---LIENIGSL 1091 (1666)
T ss_pred hhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcc------cHHHHHH---HHHHhhhH
Confidence 111110 011 122345677888999988885422 2222222 23356889
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 654 EEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 654 ~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
|.|.++-++. ..+.+|..|..|-...|.+..|...+-+ .+|++.|.-..++-.+.|+|+|-.+...+.+.+
T Consensus 1092 dRA~efAe~~---n~p~vWsqlakAQL~~~~v~dAieSyik-----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1092 DRAYEFAERC---NEPAVWSQLAKAQLQGGLVKDAIESYIK-----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred HHHHHHHHhh---CChHHHHHHHHHHHhcCchHHHHHHHHh-----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999886 3467899999999999999999877744 478999999999999999999999976655543
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2e-06 Score=87.07 Aligned_cols=273 Identities=15% Similarity=0.105 Sum_probs=155.2
Q ss_pred CCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHH---HHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhh
Q 047992 358 GFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSM---IAGYCQAGYCGKAYELFIKMQESDVPPNVITWNV 434 (868)
Q Consensus 358 g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 434 (868)
-++.++....++.+.|...|+.++|...|+....-|+.+..+| ...+.+.|+++....+...+.... +-....|-.
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 3566677777788888888888888888877665444433332 223344555555555544444211 001111222
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchh
Q 047992 435 LISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLV 514 (868)
Q Consensus 435 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 514 (868)
-........+++.|+.+-++..... +.+...+-.-...+.+.|++++|.-.|+..+.
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--------------------- 362 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALERHTQAVIAFRTAQM--------------------- 362 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccchHHHHHHHHHHHh---------------------
Confidence 2222233444555555544443322 22222222222334444444444444444331
Q ss_pred chHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHH
Q 047992 515 ASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKS 594 (868)
Q Consensus 515 ~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 594 (868)
+. +-+..+|..++..|...|+..||.-+-+....
T Consensus 363 ----------------La------------------------------p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~ 396 (564)
T KOG1174|consen 363 ----------------LA------------------------------PYRLEIYRGLFHSYLAQKRFKEANALANWTIR 396 (564)
T ss_pred ----------------cc------------------------------hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 11 22444555555555555555555554444433
Q ss_pred CCCCCC-HHHHHHHH-HHhh-ccCChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCH
Q 047992 595 FGLKPN-RGTFLSII-LAHS-LAGMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDS 669 (868)
Q Consensus 595 ~g~~p~-~~t~~~ll-~a~~-~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~ 669 (868)
.-|+ ..+..-+. ..|. ....-++|++++++-. .+.|+ ......+..++.+.|+.+++..++++. ...||.
T Consensus 397 --~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~ 471 (564)
T KOG1174|consen 397 --LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV 471 (564)
T ss_pred --HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc
Confidence 1222 22222221 1221 1223477888887654 35665 335566778999999999999999987 778999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh
Q 047992 670 SIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLI 705 (868)
Q Consensus 670 ~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 705 (868)
...+.|....+..+.+..|...+..++.++|+|-.+
T Consensus 472 ~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 472 NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 999999999999999999999999999999987543
No 70
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.03 E-value=1e-07 Score=93.47 Aligned_cols=308 Identities=14% Similarity=0.088 Sum_probs=176.4
Q ss_pred cCChhHHHHHHHHhHhCCCCCCeeeh---hhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCe--eehhhhHHHHHhcCCh
Q 047992 407 AGYCGKAYELFIKMQESDVPPNVITW---NVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNT--ASWNSLIAGYQQLGQK 481 (868)
Q Consensus 407 ~g~~~~A~~l~~~m~~~g~~p~~~t~---~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~--~~~~~li~~~~~~g~~ 481 (868)
+.+.++|.++|-+|.+. |..|+ -+|.+.|-+.|..+.|+++.+.+.+....+-+. .....|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~----d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE----DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhc----CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 35566666666666643 33333 456666777777777777777765532221111 1223345556677777
Q ss_pred hHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCC-h---hHHHHHHHHHHhcCCHHHHHHH
Q 047992 482 NNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESS-L---PVMNSLIDTYAKSGNIVYSRTI 557 (868)
Q Consensus 482 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~-~---~~~~~Li~~y~k~g~~~~A~~~ 557 (868)
|.|..+|..+.+.|.. -......++.-|-...++++|..+-..+.+.+-++. + ..|.-|...+.-..+.+.|+.+
T Consensus 124 DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 7777777776653321 122344555556666666666666666666444332 1 2344566666666777777777
Q ss_pred HhcCCCC---CceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCChHHHHHHHHHhhhhcC
Q 047992 558 FDGMSSK---DIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR--GTFLSIILAHSLAGMVDLGKKVFCSITECYQ 632 (868)
Q Consensus 558 f~~~~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 632 (868)
+.+..+- .+..=-.+...+...|++..|++.++...+. .|+- -+...+..+|.+.|+.+++..++..+.+.
T Consensus 203 l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~-- 278 (389)
T COG2956 203 LKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET-- 278 (389)
T ss_pred HHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--
Confidence 7766532 2333333445566777777788777777773 4443 33445556667777777777777666552
Q ss_pred CCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 047992 633 IIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQI 712 (868)
Q Consensus 633 ~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 712 (868)
.|..+.-..|.++.....- .+.|.....+-+.-.|.--+.|-++-.-
T Consensus 279 -~~g~~~~l~l~~lie~~~G--------------------------------~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~ 325 (389)
T COG2956 279 -NTGADAELMLADLIELQEG--------------------------------IDAAQAYLTRQLRRKPTMRGFHRLMDYH 325 (389)
T ss_pred -cCCccHHHHHHHHHHHhhC--------------------------------hHHHHHHHHHHHhhCCcHHHHHHHHHhh
Confidence 2222222233332222222 2333333344444444444444444333
Q ss_pred Hh--hcCCChhHHHHHHHHHhcCCCCCCcccEEEEcCEEEEEEeCC
Q 047992 713 YA--ICGKPEDALKVRKLERENTRRNSFGQCWIEVKNLVYTFVTGG 756 (868)
Q Consensus 713 y~--~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d 756 (868)
.+ +-|+|.+...+.+.|....++..|-+-.-.-+-+.|.|...-
T Consensus 326 l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~W~C 371 (389)
T COG2956 326 LADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLYWHC 371 (389)
T ss_pred hccccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeeeeeC
Confidence 33 346788888888888888888888887777788888887543
No 71
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.01 E-value=3.9e-06 Score=94.03 Aligned_cols=550 Identities=13% Similarity=0.041 Sum_probs=262.0
Q ss_pred hhhhHHHHHHHhcCChhHHHHHHhhcCCC---CceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCC---cchHHHHHH
Q 047992 92 FVKTKLLSVYAKCGCLDDAREVFEDMRER---NLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPD---DFLFPKILQ 165 (868)
Q Consensus 92 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~---~~t~~~ll~ 165 (868)
..+..|...|...-+...|.+.|+...+- +..+|......|++..++++|..+.-..-+. .|- ...+..+--
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk--a~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK--APAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh--chHHHHHhhhhhccc
Confidence 45677778888777888899999887653 4567888999999999999998883322211 111 111222222
Q ss_pred HhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHH---HHHHHhcCChhHH
Q 047992 166 ACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSM---ISGYFQIGENDEA 242 (868)
Q Consensus 166 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~l---i~~~~~~g~~~~A 242 (868)
.+-..++...+..-++...+.. +.|...|..|..+|..+|....|.++|++...-++.+|-.- ...-+..|.+.+|
T Consensus 571 yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence 2445556666666666666654 35677888888888888888888888877665544433221 2223456788888
Q ss_pred HHHHHHHHHcC------CccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHH
Q 047992 243 HRLFDKMCREE------IKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLF 316 (868)
Q Consensus 243 ~~l~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~ 316 (868)
+..+......- ..--..++--+...+.-.|-...|...|+.- ++.|
T Consensus 650 ld~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks----------------------------ie~f 701 (1238)
T KOG1127|consen 650 LDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS----------------------------IESF 701 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH----------------------------HHHH
Confidence 87777665320 0001111111111222222222222222221 1111
Q ss_pred HHHHhCCccCCcccHHHHHHHHhchhhHH--H-H----HHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhc
Q 047992 317 KEMSFVGVMPNGVTITSAISACTDLKALA--M-G----MEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMI 389 (868)
Q Consensus 317 ~~m~~~g~~pd~~t~~~ll~a~~~~~~~~--~-a----~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~ 389 (868)
.-...+....+...+..+-.+|.-.-..+ . . .-+..+..+.+..++.. ++..-.+|+-.. .+ -+
T Consensus 702 ~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d----~l~Lg~~c~~~h--ls---l~ 772 (1238)
T KOG1127|consen 702 IVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKND----LLFLGYECGIAH--LS---LA 772 (1238)
T ss_pred HHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchh----HHHHHHHHhhHH--HH---Hh
Confidence 11111111111111111111111110000 0 0 00000111222221111 111111111100 00 00
Q ss_pred CCCCeehHHHHHHHHHh----c----CChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCC
Q 047992 390 KDKDVYSWNSMIAGYCQ----A----GYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKV 461 (868)
Q Consensus 390 ~~~~~~~~~~li~~~~~----~----g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~ 461 (868)
.+..+|..+...|.+ . .+...|+..+.+-.+.. .-+..+||.|.-. ...|++.-|...|-.-....
T Consensus 773 --~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-- 846 (1238)
T KOG1127|consen 773 --IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-- 846 (1238)
T ss_pred --hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc--
Confidence 135566666555544 1 12346777777766543 2367778877655 66677877777776655443
Q ss_pred CCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCC-HHhHHHHHHHHhchhchHHHHHHHHHH--HH--hCCCCChh
Q 047992 462 KRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPN-CVTILSVLPACAYLVASNKVKEIHGCV--LR--RSLESSLP 536 (868)
Q Consensus 462 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~~i~~~~--~~--~~~~~~~~ 536 (868)
|....+|..+...+.++.+++.|...|...+. +.|+ ...|...----...|+.-....++..- .. .|--++..
T Consensus 847 p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~ 924 (1238)
T KOG1127|consen 847 PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQ 924 (1238)
T ss_pred ccchhheeccceeEEecccHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhh
Confidence 67788899999999999999999999998774 4443 222222111112233333333333331 11 11112222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccC
Q 047992 537 VMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAG 615 (868)
Q Consensus 537 ~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g 615 (868)
.+-.-...-...|+.++-...-+.+.. |--..++... -.|+. ..|....+...|.+
T Consensus 925 Yw~c~te~h~~Ng~~e~~I~t~~ki~s---------------------As~al~~yf~--~~p~~~fAy~~~gstlEhL~ 981 (1238)
T KOG1127|consen 925 YWLCATEIHLQNGNIEESINTARKISS---------------------ASLALSYYFL--GHPQLCFAYAANGSTLEHLE 981 (1238)
T ss_pred HHHHHHHHHHhccchHHHHHHhhhhhh---------------------hHHHHHHHHh--cCcchhHHHHHHHhHHHHHH
Confidence 222222222233443333322222211 0001111111 22332 45555555555555
Q ss_pred ChHHHHHHHHHhhhhcCCCCChhHHHHH----HHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047992 616 MVDLGKKVFCSITECYQIIPMIEHYSAM----IDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLA 691 (868)
Q Consensus 616 ~~~~a~~~~~~m~~~~~~~p~~~~y~~l----vd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~ 691 (868)
...++.........-....-+...|+-. ..++...|.++.|..-....+.+.|..+-++-++. ...|+++.+...
T Consensus 982 ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~ 1060 (1238)
T KOG1127|consen 982 EYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEF 1060 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHH
Confidence 5555555544433211112222223322 22333455666655555555555555554444444 344666666666
Q ss_pred HHHHhccCCCCchhHHHHHHHH
Q 047992 692 IERLFDLEPGDVLIQRLILQIY 713 (868)
Q Consensus 692 ~~~~~~l~p~~~~~~~~l~~~y 713 (868)
+++++.+.-++...-++++.+.
T Consensus 1061 fe~aLsis~se~d~vvLl~kva 1082 (1238)
T KOG1127|consen 1061 FEQALSISNSESDKVVLLCKVA 1082 (1238)
T ss_pred HHHHhhhcccccchhhhhHHHH
Confidence 6666666555554444444443
No 72
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=6.6e-06 Score=87.44 Aligned_cols=180 Identities=17% Similarity=0.195 Sum_probs=117.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCC-ceecHHHH-HHHH-hcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhh
Q 047992 538 MNSLIDTYAKSGNIVYSRTIFDGMSSKD-IITWNSLI-CGYV-LHGFWHAALDLFDQMKSFGLKPNRG--TFLSIILAHS 612 (868)
Q Consensus 538 ~~~Li~~y~k~g~~~~A~~~f~~~~~~d-~~~~~~li-~~~~-~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~ 612 (868)
-++|+.||. +..+.+++.-...+... ......++ .++- +...+.+|.+++.+.-+ -.|+.. .....+.-..
T Consensus 312 N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~i 387 (652)
T KOG2376|consen 312 NNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKI 387 (652)
T ss_pred HHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHH
Confidence 456777775 44566777776666433 22233333 3322 22357888888887766 456653 3333344456
Q ss_pred ccCChHHHHHHHH--------HhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC--------CCCCCHH-HHHHH
Q 047992 613 LAGMVDLGKKVFC--------SITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM--------PIEPDSS-IWEAL 675 (868)
Q Consensus 613 ~~g~~~~a~~~~~--------~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~--------~~~p~~~-~w~~l 675 (868)
..|.++.|.+++. ++.+ .+..|.. .+.+++++.+.+.-+-|.+++.+. +.++... +|.-+
T Consensus 388 s~gn~~~A~~il~~~~~~~~ss~~~-~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~a 464 (652)
T KOG2376|consen 388 SQGNPEVALEILSLFLESWKSSILE-AKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREA 464 (652)
T ss_pred hcCCHHHHHHHHHHHhhhhhhhhhh-hccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHH
Confidence 7899999999998 4443 4555544 677889999888765555554433 3333322 44445
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHH
Q 047992 676 LTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKV 725 (868)
Q Consensus 676 l~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 725 (868)
..--.++|+.+.|...++++++..|++....+.|.-.|+... .+.|..+
T Consensus 465 a~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 465 AEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred hHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHH
Confidence 555567899999999999999999999999999988887764 3444444
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.00 E-value=2.3e-08 Score=104.53 Aligned_cols=190 Identities=18% Similarity=0.133 Sum_probs=135.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 047992 535 LPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILA 610 (868)
Q Consensus 535 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a 610 (868)
...+..+...|.+.|+.++|...|++.. +.+...|+.+...|...|++++|++.|++.++ +.|+. .++..+..+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~ 141 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 4567778888999999999999998654 45677899999999999999999999999988 77865 677777788
Q ss_pred hhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHH
Q 047992 611 HSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM--PIEPDSSIWEALLTACRIHGNIDLA 688 (868)
Q Consensus 611 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~--~~~p~~~~w~~ll~a~~~~~~~~~a 688 (868)
+...|++++|.+.|+...+. .|+.........++.+.++.++|.+.+++. ...|+. |..- -.....|+.+.+
T Consensus 142 l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~--~~~~-~~~~~lg~~~~~ 215 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQ--WGWN-IVEFYLGKISEE 215 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccc--cHHH-HHHHHccCCCHH
Confidence 88899999999999988763 343322222223445678899999999664 223333 3311 122234444333
Q ss_pred HHHHHHH-------hccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcC
Q 047992 689 VLAIERL-------FDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENT 733 (868)
Q Consensus 689 ~~~~~~~-------~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 733 (868)
.+++.+ .++.|+.+.+|..|+.+|...|++++|....+...+..
T Consensus 216 -~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 216 -TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 233333 35667778899999999999999999999877665433
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=1.1e-08 Score=99.71 Aligned_cols=227 Identities=15% Similarity=0.129 Sum_probs=171.3
Q ss_pred hhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhc
Q 047992 433 NVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAY 512 (868)
Q Consensus 433 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 512 (868)
+.+...|.+.|.+.+|.+.|+...+. .|-+.||-.|-..|.+..+++.|+.+|.+-.+ ..|-.+|+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~--------- 292 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTY--------- 292 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhh---------
Confidence 55667777777777777777776654 36666777777777777777777777776553 34555554
Q ss_pred hhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHH
Q 047992 513 LVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLF 589 (868)
Q Consensus 513 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~ 589 (868)
..-....+...++.++|.++++... +.|+.+.-.+..+|.-.|+++-|+..|
T Consensus 293 -------------------------l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryY 347 (478)
T KOG1129|consen 293 -------------------------LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYY 347 (478)
T ss_pred -------------------------hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHH
Confidence 2333444555677778888877654 456777777888899999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCC-
Q 047992 590 DQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPD- 668 (868)
Q Consensus 590 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~- 668 (868)
+++++.|+. +...|..+.-+|...+++|-++.-|...... | ..|+
T Consensus 348 RRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst--------------------------------a-t~~~~ 393 (478)
T KOG1129|consen 348 RRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST--------------------------------A-TQPGQ 393 (478)
T ss_pred HHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh--------------------------------c-cCcch
Confidence 999998875 4566777777888888887777766654331 1 1233
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 669 -SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 669 -~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
..+|-.|.......||+..|.+.++-++.-||++..+++.|+-+-++.|+.++|..+....++.
T Consensus 394 aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 394 AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 3488888888888999999999999999999999999999999999999999999998877653
No 75
>PRK12370 invasion protein regulator; Provisional
Probab=98.98 E-value=3.4e-08 Score=112.99 Aligned_cols=176 Identities=12% Similarity=0.054 Sum_probs=138.8
Q ss_pred cCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHH
Q 047992 548 SGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKV 623 (868)
Q Consensus 548 ~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~ 623 (868)
.|++++|...+++.. +.+...|..+...+...|++++|+..|++..+ ..|+. ..+..+..++...|+.++|...
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 355889999998765 45677899998999999999999999999999 67875 5677777889999999999999
Q ss_pred HHHhhhhcCCCCChh-HHHHHHHhhhhcCChHHHHHHHHhC--CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 047992 624 FCSITECYQIIPMIE-HYSAMIDLYGRSGKLEEAMEFIEDM--PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFDLE 699 (868)
Q Consensus 624 ~~~m~~~~~~~p~~~-~y~~lvd~l~r~g~~~eA~~~i~~~--~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~ 699 (868)
++...+. .|... .+..+...+...|++++|.+.+++. ...|+.. .+..+..++...|+.+.|+..++++....
T Consensus 395 ~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 395 INECLKL---DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred HHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 9998874 44422 2223444566789999999999887 2235444 45666666778999999999999999999
Q ss_pred CCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 700 PGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 700 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
|++......|+..|...| ++|....+.+.
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 999999999999999888 47777444443
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.97 E-value=5.1e-06 Score=89.27 Aligned_cols=465 Identities=14% Similarity=0.098 Sum_probs=260.7
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHH
Q 047992 169 NCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDE---KDGVAWNSMISGYFQIGENDEAHRL 245 (868)
Q Consensus 169 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l 245 (868)
..+.+..+....+.+++ +++....+.....-.+...|+-++|......-.. ++.+.|..+.-.+-...++++|++.
T Consensus 19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 34455566666666665 3332222222222223445666777666554433 3566788777777777888888888
Q ss_pred HHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCc-
Q 047992 246 FDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGV- 324 (868)
Q Consensus 246 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~- 324 (868)
|......+ +.|...+.-|--.-++.|+++.....-..+.+..+. ....|.....++.-.|++..|..++++..+...
T Consensus 98 y~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 88776543 334555555555556666666666665555554322 455677777777777777777777777654432
Q ss_pred cCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCC--C-eehHHHHH
Q 047992 325 MPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDK--D-VYSWNSMI 401 (868)
Q Consensus 325 ~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~--~-~~~~~~li 401 (868)
.|+...+.....-.- -.....+.|.+++|.+.+...... | ...-.+..
T Consensus 176 ~~s~~~~e~se~~Ly-----------------------------~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka 226 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLY-----------------------------QNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKA 226 (700)
T ss_pred CCCHHHHHHHHHHHH-----------------------------HHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHH
Confidence 344433322211110 011223455566666555544432 1 11223445
Q ss_pred HHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHH-HHHhcCCHHHHH-HHHHhcccCCCCCCCeeehhhhHHHHHhcC
Q 047992 402 AGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLIS-GYIQNGNEDEAV-DLFQRMGKNDKVKRNTASWNSLIAGYQQLG 479 (868)
Q Consensus 402 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~-~~~~~g~~~~A~-~~f~~m~~~~~~~~~~~~~~~li~~~~~~g 479 (868)
..+.+.++.++|..++..++.. .||..-|...+. ++.+-.+.-+++ .+|....+.. +.....-..=++......
T Consensus 227 ~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~ee 302 (700)
T KOG1156|consen 227 DLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLNGEE 302 (700)
T ss_pred HHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhCcch
Confidence 5667777888888888877766 366666655443 333344444444 6666665432 111111111122222222
Q ss_pred ChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 047992 480 QKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFD 559 (868)
Q Consensus 480 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~ 559 (868)
-.+..-.+++.+.+.|+++-...+.++..- +..+.+.-.|+.+|...=+-..+....+
T Consensus 303 l~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~----------------------p~k~~~le~Lvt~y~~~L~~~~~f~~~D 360 (700)
T KOG1156|consen 303 LKEIVDKYLRPLLSKGVPSVFKDLRSLYKD----------------------PEKVAFLEKLVTSYQHSLSGTGMFNFLD 360 (700)
T ss_pred hHHHHHHHHHHHhhcCCCchhhhhHHHHhc----------------------hhHhHHHHHHHHHHHhhcccccCCCccc
Confidence 334445566677777777654444333211 0011123334444433211111111111
Q ss_pred --cCCCCCceecHH--HHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCChHHHHHHHHHhhhhcCCC
Q 047992 560 --GMSSKDIITWNS--LICGYVLHGFWHAALDLFDQMKSFGLKPNRG-TFLSIILAHSLAGMVDLGKKVFCSITECYQII 634 (868)
Q Consensus 560 --~~~~~d~~~~~~--li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 634 (868)
+..+|....|.. ++..|-..|+++.|+...+..+. -.|..+ -|..-...+.|+|++++|..++....+ -..
T Consensus 361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e--lD~ 436 (700)
T KOG1156|consen 361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE--LDT 436 (700)
T ss_pred ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh--ccc
Confidence 122455666655 46667788999999999999887 577764 344455678999999999999998776 345
Q ss_pred CChhHHHHHHHhhhhcCChHHHHHHHHhCCCCC-C--------HHHHHHHH--HHHHhcCCHHHHHHHHHHH
Q 047992 635 PMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEP-D--------SSIWEALL--TACRIHGNIDLAVLAIERL 695 (868)
Q Consensus 635 p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p-~--------~~~w~~ll--~a~~~~~~~~~a~~~~~~~ 695 (868)
||...-+--+.-..|+.+.++|.++.....-+. + ..+|-.+- .++.+.|++.+|.+-+..+
T Consensus 437 aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 437 ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 665554455677789999999999987763221 1 23666554 3577888888877655544
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.97 E-value=5.2e-08 Score=105.95 Aligned_cols=230 Identities=17% Similarity=0.151 Sum_probs=166.1
Q ss_pred HHhHHHHHHHHhchhchHHHHHHHHHHHHh-----CC-CCCh-hHHHHHHHHHHhcCCHHHHHHHHhcCCC-------C-
Q 047992 500 CVTILSVLPACAYLVASNKVKEIHGCVLRR-----SL-ESSL-PVMNSLIDTYAKSGNIVYSRTIFDGMSS-------K- 564 (868)
Q Consensus 500 ~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~-----~~-~~~~-~~~~~Li~~y~k~g~~~~A~~~f~~~~~-------~- 564 (868)
..|...+-..|...|.++.|.+.+...++. |. .+.+ ...+.+..+|...+++++|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 344555666677777777777776666553 21 1222 2234578899999999999888887642 2
Q ss_pred ---CceecHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCH--HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCC
Q 047992 565 ---DIITWNSLICGYVLHGFWHAALDLFDQMKS-----FGLKPNR--GTFLSIILAHSLAGMVDLGKKVFCSITECYQII 634 (868)
Q Consensus 565 ---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 634 (868)
-..+++.|..+|...|++++|...+++..+ .|..+.. .-+..+...|.+.+.+++|..++....+.+.-.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 234788888899999999988888777643 2333322 344556667999999999999999776655422
Q ss_pred CC------hhHHHHHHHhhhhcCChHHHHHHHHhC-------CC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhc-
Q 047992 635 PM------IEHYSAMIDLYGRSGKLEEAMEFIEDM-------PI--EPD-SSIWEALLTACRIHGNIDLAVLAIERLFD- 697 (868)
Q Consensus 635 p~------~~~y~~lvd~l~r~g~~~eA~~~i~~~-------~~--~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~- 697 (868)
|. ..+|+-|..+|...|+++||+++++++ .. .+. ....+.|..+|...++.+.|.+.+++...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 32 347999999999999999999999887 11 222 33667788999999999999999887764
Q ss_pred ---cCCCC---chhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 698 ---LEPGD---VLIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 698 ---l~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
..|++ ..+|-.|+-+|.+.|++++|.++-...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 34555 456778889999999999999986554
No 78
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.96 E-value=5.4e-08 Score=98.53 Aligned_cols=164 Identities=17% Similarity=0.120 Sum_probs=112.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 047992 535 LPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN-RGTFLSIILA 610 (868)
Q Consensus 535 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 610 (868)
...+..+...|...|++++|.+.|++.. +.+...|..+...+...|++++|++.|++.......|. ...+..+..+
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLC 144 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 3445556667777777777777776543 33455667777777788888888888888776432232 2445556667
Q ss_pred hhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHH
Q 047992 611 HSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIE-PDSSIWEALLTACRIHGNIDLA 688 (868)
Q Consensus 611 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~-p~~~~w~~ll~a~~~~~~~~~a 688 (868)
+...|+.++|..+|....+.. +.+...+..+..++...|++++|.+.+++. ... ++...|..+.......|+.+.|
T Consensus 145 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 222 (234)
T TIGR02521 145 ALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAA 222 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHH
Confidence 778888888888888776632 223456777788888888888888888876 222 3445666666777788888888
Q ss_pred HHHHHHHhccCC
Q 047992 689 VLAIERLFDLEP 700 (868)
Q Consensus 689 ~~~~~~~~~l~p 700 (868)
....+.+.+..|
T Consensus 223 ~~~~~~~~~~~~ 234 (234)
T TIGR02521 223 QRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHhhCc
Confidence 888887766654
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.92 E-value=1.9e-07 Score=97.62 Aligned_cols=174 Identities=14% Similarity=0.050 Sum_probs=119.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILA 610 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 610 (868)
++..++.+...|...|++++|...|++.. +.+...|..+...+...|++++|++.|++..+ ..|+.......+..
T Consensus 97 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l 174 (296)
T PRK11189 97 MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYL 174 (296)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 56778888899999999999999998764 34567888888889999999999999999988 56765432222223
Q ss_pred hhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHH--HHHHHHhC-C----CCCC-HHHHHHHHHHHHhc
Q 047992 611 HSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEE--AMEFIEDM-P----IEPD-SSIWEALLTACRIH 682 (868)
Q Consensus 611 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~e--A~~~i~~~-~----~~p~-~~~w~~ll~a~~~~ 682 (868)
+...++.++|...|..... ...|+...+ .++..+ .|++++ +.+.+.+. + ..|+ ...|..|...+...
T Consensus 175 ~~~~~~~~~A~~~l~~~~~--~~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~ 249 (296)
T PRK11189 175 AESKLDPKQAKENLKQRYE--KLDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSL 249 (296)
T ss_pred HHccCCHHHHHHHHHHHHh--hCCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHC
Confidence 4557789999999976554 223333222 333333 444433 33333321 1 1222 34899999999999
Q ss_pred CCHHHHHHHHHHHhccCC-CCchhHHHHHHHHh
Q 047992 683 GNIDLAVLAIERLFDLEP-GDVLIQRLILQIYA 714 (868)
Q Consensus 683 ~~~~~a~~~~~~~~~l~p-~~~~~~~~l~~~y~ 714 (868)
|+++.|...++++++++| +...+-..+..+..
T Consensus 250 g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~ 282 (296)
T PRK11189 250 GDLDEAAALFKLALANNVYNFVEHRYALLELAL 282 (296)
T ss_pred CCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 999999999999999997 44444444554433
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.90 E-value=2.3e-07 Score=101.05 Aligned_cols=240 Identities=16% Similarity=0.172 Sum_probs=161.3
Q ss_pred eehhhHHHHHHhcCCHHHHHHHHHhcccC-----CCCCCCee-ehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhH
Q 047992 430 ITWNVLISGYIQNGNEDEAVDLFQRMGKN-----DKVKRNTA-SWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTI 503 (868)
Q Consensus 430 ~t~~~li~~~~~~g~~~~A~~~f~~m~~~-----~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 503 (868)
.+...+..+|...|+++.|..+|+...+. +...|.+. ..+.+...|...+++++|..+|+++..-
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i--------- 270 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI--------- 270 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---------
Confidence 34455777778888888887777766432 10112211 1223455666667777777776666421
Q ss_pred HHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC----------CCCce-ecHHH
Q 047992 504 LSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS----------SKDII-TWNSL 572 (868)
Q Consensus 504 ~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~----------~~d~~-~~~~l 572 (868)
.........+.-..+++.|...|.+.|++++|...+++.. .+++. ..+.+
T Consensus 271 -------------------~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 271 -------------------REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSEL 331 (508)
T ss_pred -------------------HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHH
Confidence 0000000011123455667778999999888877776542 12222 46677
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHhhccCChHHHHHHHHHhhhhc-----CCCCC-hhH
Q 047992 573 ICGYVLHGFWHAALDLFDQMKSF---GLKPNR----GTFLSIILAHSLAGMVDLGKKVFCSITECY-----QIIPM-IEH 639 (868)
Q Consensus 573 i~~~~~~g~~~~A~~l~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p~-~~~ 639 (868)
+..|...+++++|..++++..+. -..+++ -++..+...+-+.|.+++|.++|++..+.. +..+. -.+
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 78888999999999998877542 133343 467888889999999999999999877643 11222 446
Q ss_pred HHHHHHhhhhcCChHHHHHHHHhC--------CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 047992 640 YSAMIDLYGRSGKLEEAMEFIEDM--------PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFD 697 (868)
Q Consensus 640 y~~lvd~l~r~g~~~eA~~~i~~~--------~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~ 697 (868)
++-|...|.+.++.++|.+++.+. |..|+.. ++..|...|+..||+|.|++..++++.
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 778888899999999888888765 4556655 899999999999999999999999873
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.89 E-value=9.2e-08 Score=89.68 Aligned_cols=159 Identities=18% Similarity=0.141 Sum_probs=116.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhh
Q 047992 571 SLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYG 648 (868)
Q Consensus 571 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~ 648 (868)
.+..+|.+.|+...|.+.+++.++ ..|+. .++..+...+...|..+.|.+.|+...+ +.|+ -+..+-...-|+
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~FLC 114 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHHHH
Confidence 344556666666666666666666 45544 5556666666666666666666665554 2332 334555666778
Q ss_pred hcCChHHHHHHHHhC---CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHH
Q 047992 649 RSGKLEEAMEFIEDM---PIEPDS-SIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALK 724 (868)
Q Consensus 649 r~g~~~eA~~~i~~~---~~~p~~-~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 724 (868)
..|++++|...|++. |.-|.. .+|..+.....+.|+.+.|+..+++.++++|+++.+...+++.....|++-+|.-
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 888999999888887 433433 3787877777789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC
Q 047992 725 VRKLERENTR 734 (868)
Q Consensus 725 ~~~~m~~~~~ 734 (868)
..+....++.
T Consensus 195 ~~~~~~~~~~ 204 (250)
T COG3063 195 YLERYQQRGG 204 (250)
T ss_pred HHHHHHhccc
Confidence 8887776654
No 82
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.88 E-value=2.8e-05 Score=85.48 Aligned_cols=65 Identities=18% Similarity=0.304 Sum_probs=48.1
Q ss_pred HHHHHHhhhhcCChHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCch
Q 047992 640 YSAMIDLYGRSGKLEEAME--FIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVL 704 (868)
Q Consensus 640 y~~lvd~l~r~g~~~eA~~--~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~ 704 (868)
-..+..+|.+.|+-.-|.+ ++..+ .+.| ++..|..|....++.|+.+.|...+.-++++++.+|.
T Consensus 721 ~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 721 MTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 3444555555555444444 66555 4555 4569999999999999999999999999999998763
No 83
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=2e-05 Score=78.33 Aligned_cols=128 Identities=16% Similarity=0.197 Sum_probs=65.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHH-HHHHhhhh
Q 047992 571 SLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYS-AMIDLYGR 649 (868)
Q Consensus 571 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~-~lvd~l~r 649 (868)
+|.+.+.-.-++++.+-.++....- +.-|.+.-..+..|....|...+|.++|-.+.. -.+ .+-..|. .+..+|.+
T Consensus 364 smAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~-~~i-kn~~~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISG-PEI-KNKILYKSMLARCYIR 440 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcC-hhh-hhhHHHHHHHHHHHHh
Confidence 3334444444444444444444332 122222223344444555555555555544332 011 1112232 23456667
Q ss_pred cCChHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 047992 650 SGKLEEAMEFIEDMPIEPDSSIW-EALLTACRIHGNIDLAVLAIERLFDLEPG 701 (868)
Q Consensus 650 ~g~~~eA~~~i~~~~~~p~~~~w-~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 701 (868)
.|+.+-|++++-++..+.+..+. .-..+-|.+.+.+=-|-+++..+-.+||.
T Consensus 441 nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 441 NKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred cCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 77777777777766444444433 33345688888888888888888888874
No 84
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.85 E-value=9.9e-06 Score=89.59 Aligned_cols=430 Identities=13% Similarity=0.163 Sum_probs=214.2
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhc----
Q 047992 231 SGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQN---- 306 (868)
Q Consensus 231 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---- 306 (868)
..+...|++++|++.+..-. ..+.............+.+.|+.++|..++..+.++++. |..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~-~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNE-KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhh-hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccc
Confidence 34456677777777775532 223334445556667777777777777777777777654 555555555555222
Q ss_pred -CChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhH-HHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHH
Q 047992 307 -GRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKAL-AMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAER 384 (868)
Q Consensus 307 -g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~-~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 384 (868)
.+.+...++|+++...- |.......+.-.+.....+ ..+.......++.|++ .+++.|-..|......+-...
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 24566677777775332 4433333222222222222 2344555555666643 355666666665444444444
Q ss_pred HHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeeh--hhHHHHHHhcCCHHHHHHHHHhcccCCCCC
Q 047992 385 VFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITW--NVLISGYIQNGNEDEAVDLFQRMGKNDKVK 462 (868)
Q Consensus 385 vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~li~~~~~~g~~~~A~~~f~~m~~~~~~~ 462 (868)
++...... ....+.+...- ....-+|+...| .-+...|...|++++|++++++..+.. |
T Consensus 165 l~~~~~~~-----------l~~~~~~~~~~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--P 225 (517)
T PF12569_consen 165 LVEEYVNS-----------LESNGSFSNGD------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--P 225 (517)
T ss_pred HHHHHHHh-----------hcccCCCCCcc------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--C
Confidence 43332210 00000000000 000012333223 444555667777777777777766553 2
Q ss_pred CCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCC-ChhHHHHH
Q 047992 463 RNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLES-SLPVMNSL 541 (868)
Q Consensus 463 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~L 541 (868)
-.+..|..-...+-+.|++++|.+.++..+. ++. |..+-+-.
T Consensus 226 t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~-------------------------------------LD~~DRyiNsK~ 268 (517)
T PF12569_consen 226 TLVELYMTKARILKHAGDLKEAAEAMDEARE-------------------------------------LDLADRYINSKC 268 (517)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-------------------------------------CChhhHHHHHHH
Confidence 2345566666666777777777776666653 222 55555556
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCc----------eec--HHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHH-----
Q 047992 542 IDTYAKSGNIVYSRTIFDGMSSKDI----------ITW--NSLICGYVLHGFWHAALDLFDQMKSF--GLKPNRG----- 602 (868)
Q Consensus 542 i~~y~k~g~~~~A~~~f~~~~~~d~----------~~~--~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~----- 602 (868)
+..+.++|++++|.+++.....++. ..| ..-..+|.+.|++..|++.|....+. .+.-|..
T Consensus 269 aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Y 348 (517)
T PF12569_consen 269 AKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSY 348 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHH
Confidence 6666677777777777666554431 123 22345667777777777665544331 1222222
Q ss_pred --------HHHHHHHHhhccC----C---hHHHHHHHHHhhhhcCCCCChhH-----------HHHHHHhh---hhcCCh
Q 047992 603 --------TFLSIILAHSLAG----M---VDLGKKVFCSITECYQIIPMIEH-----------YSAMIDLY---GRSGKL 653 (868)
Q Consensus 603 --------t~~~ll~a~~~~g----~---~~~a~~~~~~m~~~~~~~p~~~~-----------y~~lvd~l---~r~g~~ 653 (868)
+|..+|.-.-+.. - ...|.+++-.+.+.......... -.-+-.-. .+...-
T Consensus 349 c~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~ 428 (517)
T PF12569_consen 349 CLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKK 428 (517)
T ss_pred HHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhH
Confidence 2222222111100 0 12223333222221110000000 00000000 001111
Q ss_pred HHHHHHHH--------------hC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 047992 654 EEAMEFIE--------------DM-PIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGK 718 (868)
Q Consensus 654 ~eA~~~i~--------------~~-~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 718 (868)
+++...-. .. |.+.|....+.-|. ....=++.|.+.++-+.+..|++..+|.+--.+|.+.|+
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~GekL~--~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K 506 (517)
T PF12569_consen 429 EEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLGEKLL--KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGK 506 (517)
T ss_pred HHHHHHHhhhhhhhhccccccccccCCcCCCCccHHHHh--cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCc
Confidence 12221110 00 22223222222221 233457889999999999999999999999999999999
Q ss_pred ChhHHHH
Q 047992 719 PEDALKV 725 (868)
Q Consensus 719 ~~~a~~~ 725 (868)
+--|.+-
T Consensus 507 ~LLaLqa 513 (517)
T PF12569_consen 507 YLLALQA 513 (517)
T ss_pred HHHHHHH
Confidence 9877664
No 85
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=9e-05 Score=79.12 Aligned_cols=107 Identities=17% Similarity=0.131 Sum_probs=57.8
Q ss_pred hCCChhHHHHHHHHhHHCCCCCCcc-hHHHHHHHhhCCCChHHHHHHHHHHHHhCCCC-CcchHHHHHHHHHHcCChHHH
Q 047992 134 RDQRWREVVELFFLMVQDGLFPDDF-LFPKILQACGNCGDFEAGKLMHSLVIKLGMSC-VRRVRNSVLAVYVKCGKLIWA 211 (868)
Q Consensus 134 ~~g~~~~a~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A 211 (868)
+.+..++|+..+. |..++.. +...=-+.|-+.++++++..++.++.+.+.+. |...-..++..-. .-.+
T Consensus 91 rlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~ 161 (652)
T KOG2376|consen 91 RLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQV 161 (652)
T ss_pred HcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhH
Confidence 5667777777766 2333332 33333455677777777777777777766432 2222222222111 1112
Q ss_pred HHHHhhcCCCChhhHHHH---HHHHHhcCChhHHHHHHHHHH
Q 047992 212 RRFFESMDEKDGVAWNSM---ISGYFQIGENDEAHRLFDKMC 250 (868)
Q Consensus 212 ~~~f~~~~~~d~~~~~~l---i~~~~~~g~~~~A~~l~~~m~ 250 (868)
. +.+..+.....+|..+ .-.++..|++.+|+++++...
T Consensus 162 ~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~ 202 (652)
T KOG2376|consen 162 Q-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKAL 202 (652)
T ss_pred H-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 1 3444554444344333 334566889999999888773
No 86
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.84 E-value=9.9e-05 Score=83.23 Aligned_cols=646 Identities=13% Similarity=0.085 Sum_probs=308.6
Q ss_pred chHHHHHHHHhCCChhHHHHHHHHHhhcCCCCCcccHHHHHHHHhccCChHHHHHHHHHh-hh-cCCCChhhhhHHHHHH
Q 047992 24 FRDTHLDFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFL-NL-VTEIDVFVKTKLLSVY 101 (868)
Q Consensus 24 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~-~~-~~~~~~~~~~~li~~~ 101 (868)
.|.+|...|+...+..+|.+.|+.....+. -+..........+++..+.+.|..+.-.. .. ....-..-+-..--.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 689999999998899999999998876652 24456666778888888999988883333 11 1111111122244467
Q ss_pred HhcCChhHHHHHHhhcCC---CCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHH--hhCCCChHHH
Q 047992 102 AKCGCLDDAREVFEDMRE---RNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQA--CGNCGDFEAG 176 (868)
Q Consensus 102 ~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a 176 (868)
.+.++..+|..-|+..-+ .|...|..+..+|.+.|++..|+..|.+... +.|+. +|.....+ -+..|.+.++
T Consensus 573 Lea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS-KYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh-HHHHHHHHHHHHHhhhHHHH
Confidence 788899999999987654 4667899999999999999999999988765 45654 23322222 2456778888
Q ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCC----CChhhHHH-HHHHHHhcC----ChhHHHHHHH
Q 047992 177 KLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDE----KDGVAWNS-MISGYFQIG----ENDEAHRLFD 247 (868)
Q Consensus 177 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~d~~~~~~-li~~~~~~g----~~~~A~~l~~ 247 (868)
...++.++..- ..-....+.|...+.++-. +.+.+-|..++. +....+.. ++...+... -...|..+|-
T Consensus 650 ld~l~~ii~~~-s~e~~~q~gLaE~~ir~ak-d~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~ 727 (1238)
T KOG1127|consen 650 LDALGLIIYAF-SLERTGQNGLAESVIRDAK-DSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFS 727 (1238)
T ss_pred HHHHHHHHHHH-HHHHHhhhhHHHHHHHHHH-HHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHH
Confidence 88877776542 1112223334443433321 111222222211 01111111 111101000 0122333333
Q ss_pred HHHHcCCccChhhHHHHHHHHHhcCCh---H---HHHHHHHHHHhcCCCCCeeeHHHHHHHHHhc--------CChhHHH
Q 047992 248 KMCREEIKLGVVTFNILIRSYNQLGQC---D---VAMEMVKRMESLGITPDVFTWTCMISGFAQN--------GRTSQAL 313 (868)
Q Consensus 248 ~m~~~g~~p~~~~~~~li~~~~~~g~~---~---~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------g~~~~A~ 313 (868)
... .. .|+......|..-.-+.+.. + -+.+.+-. ......+..+|..++..|.+. .+...|+
T Consensus 728 q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~--hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai 803 (1238)
T KOG1127|consen 728 QEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA--HLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAI 803 (1238)
T ss_pred Hhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH--HHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHH
Confidence 332 11 22222222222212222222 1 01111100 001112355555555554431 1112344
Q ss_pred HHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCC-CCCccHHHHHHHHHHcCCCHHHHHHHHHhcCC-
Q 047992 314 DLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGF-TDDVLVGNSLINMYSKCEELEAAERVFDMIKD- 391 (868)
Q Consensus 314 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~- 391 (868)
..+.+..+ ...|..-+-..+...+..|++..+. |..+...-. +....+|..+.-.+.+..+++.|...|.....
T Consensus 804 ~c~KkaV~--L~ann~~~WnaLGVlsg~gnva~aQ--HCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL 879 (1238)
T KOG1127|consen 804 RCCKKAVS--LCANNEGLWNALGVLSGIGNVACAQ--HCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL 879 (1238)
T ss_pred HHHHHHHH--HhhccHHHHHHHHHhhccchhhhhh--hhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhc
Confidence 44444332 1122222222233333333332222 222221111 22233444444444555555555555554432
Q ss_pred --CCeehHHHHHHHHHhcCChhHHHHHHHHhH----hCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCe
Q 047992 392 --KDVYSWNSMIAGYCQAGYCGKAYELFIKMQ----ESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNT 465 (868)
Q Consensus 392 --~~~~~~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~ 465 (868)
.|.+.|--+.......|+.-+++.+|..-- ..|--|+..-|-........+|+.++-+...+.+..
T Consensus 880 dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~s-------- 951 (1238)
T KOG1127|consen 880 DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISS-------- 951 (1238)
T ss_pred CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhh--------
Confidence 133344444444444444444444444311 111122222222222222333443333333222211
Q ss_pred eehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHh-CCCCChhHHH----H
Q 047992 466 ASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRR-SLESSLPVMN----S 540 (868)
Q Consensus 466 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~----~ 540 (868)
|--.+++.. .|.+-+.+.|.......-.++..+.+.+....++.- ....+...++ .
T Consensus 952 ------------------As~al~~yf-~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~ 1012 (1238)
T KOG1127|consen 952 ------------------ASLALSYYF-LGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPD 1012 (1238)
T ss_pred ------------------hHHHHHHHH-hcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 000111111 123334555555555555555555444444333210 0111222233 3
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC-CCceecHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCH-HHHHHHHHHhhccCCh
Q 047992 541 LIDTYAKSGNIVYSRTIFDGMSS-KDIITWNSLICGYVLHGFWHAALDLFDQMKSF-GLKPNR-GTFLSIILAHSLAGMV 617 (868)
Q Consensus 541 Li~~y~k~g~~~~A~~~f~~~~~-~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~-~t~~~ll~a~~~~g~~ 617 (868)
+...+...|+++.|...+..... -|...-..-+. ....|+++++++.|++...- .-..|. +....++-+....+.-
T Consensus 1013 ~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k 1091 (1238)
T KOG1127|consen 1013 AGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQK 1091 (1238)
T ss_pred hhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccc
Confidence 45566667888877777765542 12211111121 24578899999999999872 122232 2333444555677777
Q ss_pred HHHHHHHHHhhhhcCCCCChhHHHHHH-------HhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047992 618 DLGKKVFCSITECYQIIPMIEHYSAMI-------DLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVL 690 (868)
Q Consensus 618 ~~a~~~~~~m~~~~~~~p~~~~y~~lv-------d~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~ 690 (868)
+.|+..+-.... --.|+....-|+. |.-+-.+-++|-.++++.=-+.-++.....+ -+...|+-....+
T Consensus 1092 ~~A~~lLfe~~~--ls~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~--i~~~~~r~~~vk~ 1167 (1238)
T KOG1127|consen 1092 NDAQFLLFEVKS--LSKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKEL--IYALQGRSVAVKK 1167 (1238)
T ss_pred hHHHHHHHHHHH--hCccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHH--HHHHhhhhHHHHH
Confidence 888776655544 2334444433332 2222233333333333221111122221222 2456788899999
Q ss_pred HHHHHhccCCCCchhHHHHHHHHhh
Q 047992 691 AIERLFDLEPGDVLIQRLILQIYAI 715 (868)
Q Consensus 691 ~~~~~~~l~p~~~~~~~~l~~~y~~ 715 (868)
..++.+--.|.|+..|.+|++=|++
T Consensus 1168 ~~qr~~h~~P~~~~~WslL~vrya~ 1192 (1238)
T KOG1127|consen 1168 QIQRAVHSNPGDPALWSLLSVRYAQ 1192 (1238)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHH
Confidence 9999999999999999999976654
No 87
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=0.0002 Score=78.82 Aligned_cols=552 Identities=14% Similarity=0.102 Sum_probs=268.6
Q ss_pred ChhhhhHHHH--HHHhcCChhHHHHHHhhcCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHC-C--------CCCCcc
Q 047992 90 DVFVKTKLLS--VYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELFFLMVQD-G--------LFPDDF 158 (868)
Q Consensus 90 ~~~~~~~li~--~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g--------~~p~~~ 158 (868)
|..+..++++ .|...|+++.|.+-.+.+. .-..|..|.+.+.+..+.+-|.-.+-.|... | -.|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 4445555554 5677888888877766654 3456888888888888887776666555321 1 1122 1
Q ss_pred hHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCC-hhhHHHHHHHHHhcC
Q 047992 159 LFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKD-GVAWNSMISGYFQIG 237 (868)
Q Consensus 159 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d-~~~~~~li~~~~~~g 237 (868)
+=.-+.-.....|.+++|+.++....+.. .|=..|-..|.+++|.++-+.-..-. ..+|.....-+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 21222222345677888888888776643 23455667788888877765432211 124555555555567
Q ss_pred ChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHH
Q 047992 238 ENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFK 317 (868)
Q Consensus 238 ~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 317 (868)
+.+.|++.|+.-... -..++..|. .++.......+++. |...|.-...-+-..|+.+.|+.+|.
T Consensus 873 Di~~AleyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred cHHHHHHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHH
Confidence 777777777653211 000111110 01111111122221 33444444455555677777777777
Q ss_pred HHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehH
Q 047992 318 EMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSW 397 (868)
Q Consensus 318 ~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~ 397 (868)
...+ |-++.+..+-.|..++|-+|-.+ ..|....-.|..+|-..|++.+|...|.+.+. +
T Consensus 937 ~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa-----f 996 (1416)
T KOG3617|consen 937 SAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQA-----F 996 (1416)
T ss_pred Hhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-----H
Confidence 6642 34455555556666666665433 22555666677777777887777777766542 2
Q ss_pred HHHHHHHHhcC---------------ChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHh--------
Q 047992 398 NSMIAGYCQAG---------------YCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQR-------- 454 (868)
Q Consensus 398 ~~li~~~~~~g---------------~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~-------- 454 (868)
...|+.+-.++ +.-.|-.+|++.- .-+...+..|-+.|.+.+|+++--+
T Consensus 997 snAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g--------~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~ 1068 (1416)
T KOG3617|consen 997 SNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELG--------GYAHKAVMLYHKAGMIGKALELAFRTQQFSALD 1068 (1416)
T ss_pred HHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc--------hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHH
Confidence 22222222211 1222233333221 0112233345566666555543211
Q ss_pred -cccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHH--hCC
Q 047992 455 -MGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLR--RSL 531 (868)
Q Consensus 455 -m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~--~~~ 531 (868)
+.++-....|+...+.-.+-++.+.++++|..++...++ |...+..|...+- .-..++-+.+.- .+.
T Consensus 1069 lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~nv-~vtee~aE~mTp~Kd~~ 1138 (1416)
T KOG3617|consen 1069 LIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRNV-RVTEEFAELMTPTKDDM 1138 (1416)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCCC-chhHHHHHhcCcCcCCC
Confidence 111111223444555555566667777777766655432 3334444433221 111111111110 011
Q ss_pred CC---ChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----------C--cee----------cHHHHHHHHhcCChHHH
Q 047992 532 ES---SLPVMNSLIDTYAKSGNIVYSRTIFDGMSSK-----------D--IIT----------WNSLICGYVLHGFWHAA 585 (868)
Q Consensus 532 ~~---~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~-----------d--~~~----------~~~li~~~~~~g~~~~A 585 (868)
.+ ...+...+.+.+.+.|++..|-+-|.+.-.+ | -+. ...|..-|.+.=++..-
T Consensus 1139 ~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~ 1218 (1416)
T KOG3617|consen 1139 PNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDN 1218 (1416)
T ss_pred ccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccC
Confidence 11 1234555666666777766666666543321 0 000 01122233333222221
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCC
Q 047992 586 LDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPI 665 (868)
Q Consensus 586 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~ 665 (868)
-++. .|.+||..-..|+-+.+. +|....+ -.+++|..+-.. .|-++||.+-+.++..
T Consensus 1219 pq~m---------K~I~tFYTKgqafd~Lan------FY~~cAq-----iEiee~q~ydKa---~gAl~eA~kCl~ka~~ 1275 (1416)
T KOG3617|consen 1219 PQTM---------KDIETFYTKGQAFDHLAN------FYKSCAQ-----IEIEELQTYDKA---MGALEEAAKCLLKAEQ 1275 (1416)
T ss_pred hHHH---------hhhHhhhhcchhHHHHHH------HHHHHHH-----hhHHHHhhhhHH---hHHHHHHHHHHHHHHh
Confidence 1111 122333333333322222 2221111 122333332222 2456677666666543
Q ss_pred CCCHH-HHH----------HHHHHHHhcC-CHHHHHHHHHHHhccCCCC------chhHHHHHHHHhhcCCChhHHHHHH
Q 047992 666 EPDSS-IWE----------ALLTACRIHG-NIDLAVLAIERLFDLEPGD------VLIQRLILQIYAICGKPEDALKVRK 727 (868)
Q Consensus 666 ~p~~~-~w~----------~ll~a~~~~~-~~~~a~~~~~~~~~l~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~ 727 (868)
+.+.. .++ ..|...+..+ |...+.+-.+-+++ +|.. ...|-+|..-|....+|..|-+..+
T Consensus 1276 k~~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lle-ep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~ 1354 (1416)
T KOG3617|consen 1276 KNMSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLE-EPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALT 1354 (1416)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh-CcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHH
Confidence 32222 222 2233333322 44555555555544 3433 3567788899999999999999988
Q ss_pred HHHh
Q 047992 728 LERE 731 (868)
Q Consensus 728 ~m~~ 731 (868)
.|+.
T Consensus 1355 el~~ 1358 (1416)
T KOG3617|consen 1355 ELQK 1358 (1416)
T ss_pred HHhh
Confidence 8863
No 88
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.70 E-value=5.4e-05 Score=81.61 Aligned_cols=244 Identities=13% Similarity=0.169 Sum_probs=153.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHH
Q 047992 225 AWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFA 304 (868)
Q Consensus 225 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 304 (868)
.|..++..| ..+++...+++.+.+... ..--..|.....-.+...|+.++|......-....+. +.+.|..+.-.+-
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHh
Confidence 344444444 345677777777776652 2222233333334456678888888888877765555 7888988888888
Q ss_pred hcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHH
Q 047992 305 QNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAER 384 (868)
Q Consensus 305 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 384 (868)
...++++|+..|+.... +.||.... +.-|.-.-++.++++....
T Consensus 87 ~dK~Y~eaiKcy~nAl~--~~~dN~qi----------------------------------lrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALK--IEKDNLQI----------------------------------LRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred hhhhHHHHHHHHHHHHh--cCCCcHHH----------------------------------HHHHHHHHHHHHhhhhHHH
Confidence 88889999999988854 33443221 1111111222233332222
Q ss_pred HHHhc---CCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCC-CCCCeeehhhHH------HHHHhcCCHHHHHHHHHh
Q 047992 385 VFDMI---KDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESD-VPPNVITWNVLI------SGYIQNGNEDEAVDLFQR 454 (868)
Q Consensus 385 vf~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~li------~~~~~~g~~~~A~~~f~~ 454 (868)
.-... .......|..++.++.-.|+...|..++++..+.. -.|+...+.-.. ....+.|..++|.+.+..
T Consensus 131 tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 131 TRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 22222 22355678888888999999999999998888665 245655553332 234567888888888776
Q ss_pred cccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHh
Q 047992 455 MGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACA 511 (868)
Q Consensus 455 m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 511 (868)
.... +......-.+....+.+.++.++|..+++.++. ..||..-|.-.+..|.
T Consensus 211 ~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~--rnPdn~~Yy~~l~~~l 263 (700)
T KOG1156|consen 211 NEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE--RNPDNLDYYEGLEKAL 263 (700)
T ss_pred hhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh--hCchhHHHHHHHHHHH
Confidence 6432 122222334556778899999999999999885 4688777776666554
No 89
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=8.7e-05 Score=75.58 Aligned_cols=290 Identities=11% Similarity=0.048 Sum_probs=193.2
Q ss_pred hhHHHHHHh--cCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHH-
Q 047992 433 NVLISGYIQ--NGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPA- 509 (868)
Q Consensus 433 ~~li~~~~~--~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a- 509 (868)
..-+.+|++ .++...|...|-.+.....++.|+.....+...+...|+.++|...|++.+. +.|+.++-.-+-..
T Consensus 198 s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~L 275 (564)
T KOG1174|consen 198 SKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVL 275 (564)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHH
Confidence 334555544 4566667777776666666788888999999999999999999999998763 45654432211111
Q ss_pred HhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHH
Q 047992 510 CAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAAL 586 (868)
Q Consensus 510 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~ 586 (868)
...-|+++....+..++....- ....-|-.-........+.+.|...-++.. ++++..+-.-...+.+.|+.++|+
T Consensus 276 L~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~ 354 (564)
T KOG1174|consen 276 LGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAV 354 (564)
T ss_pred HHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHH
Confidence 1344566666665555544210 111111111112223456667776666544 344444544456677889999999
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHH-Hhhh-hcCChHHHHHHHHhC
Q 047992 587 DLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMI-DLYG-RSGKLEEAMEFIEDM 663 (868)
Q Consensus 587 ~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv-d~l~-r~g~~~eA~~~i~~~ 663 (868)
-.|+..+. +.|-. ..|-+++..|...|...||.-.-+...+..+ .+..+.+.+. +.+. ..---|+|.+++++.
T Consensus 355 IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~--~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 355 IAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQ--NSARSLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred HHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhh--cchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence 99998887 77754 7899999999999999998877665544322 2333333331 2222 222347899999887
Q ss_pred -CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 664 -PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 664 -~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
.++|+-. .-..+...|...|..+.+....++.+...|++ ..++.|+.+.++...+.+|...+....
T Consensus 431 L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 431 LKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred hccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 7788755 55667778889999999999999999999864 678899999999999999988776543
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.65 E-value=1e-05 Score=80.10 Aligned_cols=306 Identities=12% Similarity=0.110 Sum_probs=197.4
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHH---HHHHhcCChhHHHHHHHHhHhCCCCCCeeehh-hHHHHHHhcCC
Q 047992 369 LINMYSKCEELEAAERVFDMIKDKDVYSWNSMI---AGYCQAGYCGKAYELFIKMQESDVPPNVITWN-VLISGYIQNGN 444 (868)
Q Consensus 369 li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~li~~~~~~g~ 444 (868)
|...+...|++.+|..-|....+-|+..|.++. ..|...|+..-|+.-|...++. +||-..-. .-...+.+.|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhccc
Confidence 444555678889999999988888888777764 4788899999999888888866 56633221 11234678999
Q ss_pred HHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHH
Q 047992 445 EDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHG 524 (868)
Q Consensus 445 ~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~ 524 (868)
++.|..=|+.+.+.. |+.. ....++.+.- +.+++. .....+......|+...+.+...
T Consensus 122 le~A~~DF~~vl~~~---~s~~---~~~eaqskl~-------~~~e~~---------~l~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHE---PSNG---LVLEAQSKLA-------LIQEHW---------VLVQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred HHHHHHHHHHHHhcC---CCcc---hhHHHHHHHH-------hHHHHH---------HHHHHHHHHhcCCchhhHHHHHH
Confidence 999999999987654 2211 1111111111 111111 12333444556788888888888
Q ss_pred HHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhc---CCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 047992 525 CVLRRSLES-SLPVMNSLIDTYAKSGNIVYSRTIFDG---MSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN 600 (868)
Q Consensus 525 ~~~~~~~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~---~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 600 (868)
.+++ +.| |..++..-.++|.+.|++..|..-+.. +...+.....-+-..+..-|+.+.++...++-++ +.||
T Consensus 180 ~llE--i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpd 255 (504)
T KOG0624|consen 180 HLLE--IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPD 255 (504)
T ss_pred HHHh--cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcc
Confidence 8888 555 899999999999999999999876664 4456777777788888899999999999999888 8899
Q ss_pred HHH-HHHH--H----------HHhhccCChHHHHHHHHHhhhhcCCCCC-----hhHHHHHHHhhhhcCChHHHHHHHHh
Q 047992 601 RGT-FLSI--I----------LAHSLAGMVDLGKKVFCSITECYQIIPM-----IEHYSAMIDLYGRSGKLEEAMEFIED 662 (868)
Q Consensus 601 ~~t-~~~l--l----------~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~~lvd~l~r~g~~~eA~~~i~~ 662 (868)
+-. |... | ......+.+.+++.-.+...+ ..|. ...+..+-.++...|++-||+....+
T Consensus 256 HK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~e 332 (504)
T KOG0624|consen 256 HKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKE 332 (504)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecccccCCHHHHHHHHHH
Confidence 843 2211 1 012223344444443333322 2232 11223333455566777777766666
Q ss_pred C-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh
Q 047992 663 M-PIEPDS-SIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLI 705 (868)
Q Consensus 663 ~-~~~p~~-~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 705 (868)
. .+.||. .++.--..|+.....++.|..-++++.+++|+|..+
T Consensus 333 vL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 333 VLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 5 555553 366666666666677777777777777777766544
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.64 E-value=8e-07 Score=91.47 Aligned_cols=159 Identities=13% Similarity=0.091 Sum_probs=98.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC
Q 047992 536 PVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAG 615 (868)
Q Consensus 536 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 615 (868)
.+......+|...|++++|.+++.+. .+.......+..|...++.+.|.+.++.|.+ ...|. +...+..|+
T Consensus 103 ~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~aw---- 173 (290)
T PF04733_consen 103 IVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAW---- 173 (290)
T ss_dssp HHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHH----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHH----
Confidence 33344456677888899888888765 4555556677788888888888888888887 44443 333333322
Q ss_pred ChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047992 616 MVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM--PIEPDSSIWEALLTACRIHGNIDLAVLAIE 693 (868)
Q Consensus 616 ~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~--~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~ 693 (868)
|.+..-...+.+|..+|+++ .+.+++.+.+.+..+....|+++.|+..++
T Consensus 174 ----------------------------v~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~ 225 (290)
T PF04733_consen 174 ----------------------------VNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLE 225 (290)
T ss_dssp ----------------------------HHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred ----------------------------HHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 22222223455555555555 334555566666666667777777777777
Q ss_pred HHhccCCCCchhHHHHHHHHhhcCCC-hhHHHHHHHHHh
Q 047992 694 RLFDLEPGDVLIQRLILQIYAICGKP-EDALKVRKLERE 731 (868)
Q Consensus 694 ~~~~l~p~~~~~~~~l~~~y~~~g~~-~~a~~~~~~m~~ 731 (868)
++++.+|+++.+...+.-+..-.|+. +.+.+....++.
T Consensus 226 ~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 226 EALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 77777777777777777777777777 445556665553
No 92
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.64 E-value=5.6e-07 Score=88.20 Aligned_cols=123 Identities=14% Similarity=0.085 Sum_probs=61.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcCC--CCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeeh-hhHHHHHHhcC
Q 047992 367 NSLINMYSKCEELEAAERVFDMIKD--KDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITW-NVLISGYIQNG 443 (868)
Q Consensus 367 ~~li~~y~~~g~~~~A~~vf~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~li~~~~~~g 443 (868)
+.+...|.+.|-+.+|.+.|+...+ +-+.+|-.+...|.+-.++..|+.+|.+-.+. .|-.+|| ..+...+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 4455566666666666666655432 34445555555555555555555555554433 2333333 22334444455
Q ss_pred CHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhc
Q 047992 444 NEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQS 493 (868)
Q Consensus 444 ~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 493 (868)
+.++|.++++...+.. +.++.+...+..+|.-.+++|-|+..++++.+
T Consensus 305 ~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq 352 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQ 352 (478)
T ss_pred hHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHH
Confidence 5555555555554433 33444444444455555555555555554443
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=6.9e-05 Score=79.30 Aligned_cols=175 Identities=13% Similarity=0.019 Sum_probs=119.5
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHH
Q 047992 541 LIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDL 619 (868)
Q Consensus 541 Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~ 619 (868)
+...|.+.|+.+.|...|.+...+... -....+....++++...+...- +.|+. .-.-.-.+.+.+.|++.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHH
Confidence 455788889999999999875422111 1112233345666666555554 55554 222333567788999999
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 047992 620 GKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFD 697 (868)
Q Consensus 620 a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~ 697 (868)
|...|..+++. .+-+...|+--.-+|.+.|.+.+|.+-.+.. ...|+.. .|.--+.+.+..++++.|..++++.++
T Consensus 377 Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 377 AVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998873 2334557888888899999999888877665 4556554 554455666778999999999999999
Q ss_pred cCCCCchhHHHHHHHHhhcCCChhHHH
Q 047992 698 LEPGDVLIQRLILQIYAICGKPEDALK 724 (868)
Q Consensus 698 l~p~~~~~~~~l~~~y~~~g~~~~a~~ 724 (868)
++|++..+-..+...+.....-+...+
T Consensus 455 ~dp~~~e~~~~~~rc~~a~~~~~~~ee 481 (539)
T KOG0548|consen 455 LDPSNAEAIDGYRRCVEAQRGDETPEE 481 (539)
T ss_pred cCchhHHHHHHHHHHHHHhhcCCCHHH
Confidence 999998888888777776433333333
No 94
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.58 E-value=1.9e-05 Score=74.52 Aligned_cols=192 Identities=13% Similarity=-0.011 Sum_probs=137.1
Q ss_pred HhchhchHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCceecHHHHHHHHhcCChHHH
Q 047992 510 CAYLVASNKVKEIHGCVLRRSLES-SLPVMNSLIDTYAKSGNIVYSRTIFDGM---SSKDIITWNSLICGYVLHGFWHAA 585 (868)
Q Consensus 510 ~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~~---~~~d~~~~~~li~~~~~~g~~~~A 585 (868)
+...|+...|+.-++.+++ .+| +.-++..+...|.+.|..+.|.+.|++. .+++-...|....-++..|++++|
T Consensus 45 YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHH
Confidence 3344444444444444444 444 4556777888888899999998888864 356667778888888888899999
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-
Q 047992 586 LDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM- 663 (868)
Q Consensus 586 ~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~- 663 (868)
...|++....-.-|.. .||..+.-+-.+.|+.+.|..+|+...+.- .-.......|.+.....|++-+|..+++..
T Consensus 123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 9999988875444433 677777777778899999999998877622 222345677888888899999999988877
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh
Q 047992 664 -PIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLI 705 (868)
Q Consensus 664 -~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 705 (868)
...++.....-.+..-+..||.+.+-+.-.++-.+-|.....
T Consensus 201 ~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 201 QRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred hcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 344666554444555677888888888888888888876543
No 95
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.56 E-value=5.5e-07 Score=95.45 Aligned_cols=224 Identities=18% Similarity=0.216 Sum_probs=156.7
Q ss_pred HHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHH
Q 047992 439 YIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNK 518 (868)
Q Consensus 439 ~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 518 (868)
+.+.|++.+|.-.|+...+.. |.+...|..|......+++-..|+..+++..+ +.|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~------------------- 351 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLE--LDPT------------------- 351 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCc-------------------
Confidence 467888888888888887765 66777888888777777777777777776653 2232
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-ceecHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 047992 519 VKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKD-IITWNSLICGYVLHGFWHAALDLFDQMKSFGL 597 (868)
Q Consensus 519 ~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 597 (868)
|..+..+|.-.|...|.-.+|.+.++.-.... ...|.... ...+++.
T Consensus 352 ---------------NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a---~~~~~~~-------------- 399 (579)
T KOG1125|consen 352 ---------------NLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSA---GENEDFE-------------- 399 (579)
T ss_pred ---------------cHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhcccc---Ccccccc--------------
Confidence 34445555555555555555555555431100 00010000 0000000
Q ss_pred CCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHH-HHHHH
Q 047992 598 KPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSS-IWEAL 675 (868)
Q Consensus 598 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~-~w~~l 675 (868)
. | ....+......-.++|-.+....+..++.+.+.+|.=+|.-.|.++.|.+-|+.+ ..+|+.. +|+-|
T Consensus 400 ~----~-----~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRL 470 (579)
T KOG1125|consen 400 N----T-----KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRL 470 (579)
T ss_pred C----C-----cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHh
Confidence 0 0 1111222334556677777777786778888999999999999999999999988 6777654 99999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHH
Q 047992 676 LTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVR 726 (868)
Q Consensus 676 l~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 726 (868)
......-...++|..+|.++++|.|.-..+...|+-.|...|.++||.+..
T Consensus 471 GAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 471 GATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred hHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 998888889999999999999999999999999999999999999999953
No 96
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.54 E-value=1.7e-06 Score=79.46 Aligned_cols=123 Identities=12% Similarity=0.036 Sum_probs=97.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-C
Q 047992 586 LDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-P 664 (868)
Q Consensus 586 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~ 664 (868)
..+|++.++ +.|+. +.....++...|++++|..+|+..... -+.+...|..+..++.+.|++++|...+++. .
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 356667666 66765 445666778889999999988887752 2335667788888999999999999999988 4
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047992 665 IEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYA 714 (868)
Q Consensus 665 ~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 714 (868)
..| ++..|..+..++...|+.+.|...+++++++.|+++.++..++++..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 445 45588888888889999999999999999999999999988887654
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.54 E-value=0.0013 Score=81.36 Aligned_cols=362 Identities=10% Similarity=-0.052 Sum_probs=208.2
Q ss_pred HHHHHcCCCHHHHHHHHHhcCCCCeeh--HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHH
Q 047992 370 INMYSKCEELEAAERVFDMIKDKDVYS--WNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDE 447 (868)
Q Consensus 370 i~~y~~~g~~~~A~~vf~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 447 (868)
...|...|++.+|..........+... ...........|+++.+...+..+.......+..........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 334555666666666555554432111 111122344567777777776665322111122223334445567788888
Q ss_pred HHHHHHhcccCCCC-----CCCe--eehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCH----HhHHHHHHHHhchhch
Q 047992 448 AVDLFQRMGKNDKV-----KRNT--ASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNC----VTILSVLPACAYLVAS 516 (868)
Q Consensus 448 A~~~f~~m~~~~~~-----~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~ 516 (868)
|..++......... .+.. .....+...+...|++++|...+++....--..+. .....+-..+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 88888766432100 0111 11122234456788888888888876542111121 1222233344567888
Q ss_pred HHHHHHHHHHHHhCCC---C--ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------CC----ceecHHHHHHHHhcC
Q 047992 517 NKVKEIHGCVLRRSLE---S--SLPVMNSLIDTYAKSGNIVYSRTIFDGMSS-------KD----IITWNSLICGYVLHG 580 (868)
Q Consensus 517 ~~~~~i~~~~~~~~~~---~--~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-------~d----~~~~~~li~~~~~~g 580 (868)
+.+...+.......-. + .......+...+...|+++.|...+++... ++ ...+..+...+...|
T Consensus 508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G 587 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA 587 (903)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 8888877776542111 1 123445667788889999999888775431 11 112334455566779
Q ss_pred ChHHHHHHHHHHHHC--CCCCCH--HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHH-----HHHHHhhhhcC
Q 047992 581 FWHAALDLFDQMKSF--GLKPNR--GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHY-----SAMIDLYGRSG 651 (868)
Q Consensus 581 ~~~~A~~l~~~m~~~--g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y-----~~lvd~l~r~g 651 (868)
++++|...+++.... ...|.. ..+..+.......|+.++|...+...............+ ......+...|
T Consensus 588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 667 (903)
T PRK04841 588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG 667 (903)
T ss_pred CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence 999999998887652 112222 233334456678899999999888875532211111111 11123445688
Q ss_pred ChHHHHHHHHhCCC--CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhccCC------CCchhHHHHHHHHhhcCCC
Q 047992 652 KLEEAMEFIEDMPI--EPDS----SIWEALLTACRIHGNIDLAVLAIERLFDLEP------GDVLIQRLILQIYAICGKP 719 (868)
Q Consensus 652 ~~~eA~~~i~~~~~--~p~~----~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p------~~~~~~~~l~~~y~~~g~~ 719 (868)
..++|.+++..... .... ..+..+..++...|+.+.|...++++++... .....+..++..|...|+.
T Consensus 668 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~ 747 (903)
T PRK04841 668 DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRK 747 (903)
T ss_pred CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCH
Confidence 99999999877621 1111 1234555667778999999999999887532 2334678889999999999
Q ss_pred hhHHHHHHHHHh
Q 047992 720 EDALKVRKLERE 731 (868)
Q Consensus 720 ~~a~~~~~~m~~ 731 (868)
++|........+
T Consensus 748 ~~A~~~L~~Al~ 759 (903)
T PRK04841 748 SEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHHH
Confidence 999886555544
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=3.7e-05 Score=74.75 Aligned_cols=403 Identities=13% Similarity=0.033 Sum_probs=213.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhc
Q 047992 261 FNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTD 340 (868)
Q Consensus 261 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 340 (868)
+++.+..+.+..++++|++++..-.++.++ +....+.+..+|....++..|.+.|+++.. ..|...-|...
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY------ 83 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLY------ 83 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHH------
Confidence 455555556666677777776666655433 556667777777777777777777777742 22332222110
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCC-eehHHHHH--HHHHhcCChhHHHHHH
Q 047992 341 LKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKD-VYSWNSMI--AGYCQAGYCGKAYELF 417 (868)
Q Consensus 341 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~-~~~~~~li--~~~~~~g~~~~A~~l~ 417 (868)
-...+-+.+.+.+|.++...|.+.+ ...-..-+ ...-+.+++..+..+.
T Consensus 84 ----------------------------~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLv 135 (459)
T KOG4340|consen 84 ----------------------------QAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLV 135 (459)
T ss_pred ----------------------------HHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHH
Confidence 0111223445555666665555421 11111111 1122346666667777
Q ss_pred HHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCC
Q 047992 418 IKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFY 497 (868)
Q Consensus 418 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 497 (868)
++....| +..+.+...-...+.|++++|.+-|+...+-++..|- ..|+. .-+..+.|+.+.|+++..++.+.|++
T Consensus 136 eQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl-lAYni-ALaHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 136 EQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL-LAYNL-ALAHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCch-hHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhh
Confidence 7666443 4444444444556788888888888887776655443 33443 33455677888888888888777764
Q ss_pred CCHHh-HHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----CceecHH
Q 047992 498 PNCVT-ILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSK-----DIITWNS 571 (868)
Q Consensus 498 p~~~t-~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~-----d~~~~~~ 571 (868)
..+.- ....... .....+.....+|.-.+ +..+|.-.-.+.+.|+.+.|++.+-.|+++ |+++.-.
T Consensus 211 ~HPElgIGm~teg-iDvrsvgNt~~lh~Sal-------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN 282 (459)
T KOG4340|consen 211 QHPELGIGMTTEG-IDVRSVGNTLVLHQSAL-------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHN 282 (459)
T ss_pred cCCccCccceecc-CchhcccchHHHHHHHH-------HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhH
Confidence 32110 0000000 00000001111111110 112233344567899999999999999975 6677655
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhh-h
Q 047992 572 LICGYVLHGFWHAALDLFDQMKSFGLKPN-RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYG-R 649 (868)
Q Consensus 572 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~-r 649 (868)
|.-. -..|++.+..+-+.-+++ +.|- ..||..+|-.|++...++-|-.++-.-....---.+...|. ++|.+. -
T Consensus 283 ~Al~-n~~~~p~~g~~KLqFLL~--~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~ 358 (459)
T KOG4340|consen 283 QALM-NMDARPTEGFEKLQFLLQ--QNPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITC 358 (459)
T ss_pred HHHh-cccCCccccHHHHHHHHh--cCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhC
Confidence 5322 234566666666666666 4553 37999999999999888888777653211000001111222 233333 2
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHH---------HhcCCHH----HHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 047992 650 SGKLEEAMEFIEDMPIEPDSSIWEALLTAC---------RIHGNID----LAVLAIERLFDLEPGDVLIQRLILQIYAIC 716 (868)
Q Consensus 650 ~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~---------~~~~~~~----~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 716 (868)
.-..++|++-++... ..+++-. .++.+-+ .+..-++..+|+. -......+++|...
T Consensus 359 qT~pEea~KKL~~La--------~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~ 427 (459)
T KOG4340|consen 359 QTAPEEAFKKLDGLA--------GMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNL 427 (459)
T ss_pred CCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccc
Confidence 335556655554431 1111111 1222222 2333344445443 23345568899999
Q ss_pred CCChhHHHHHHH
Q 047992 717 GKPEDALKVRKL 728 (868)
Q Consensus 717 g~~~~a~~~~~~ 728 (868)
.++.-|+++.+.
T Consensus 428 ~Dy~~vEk~Fr~ 439 (459)
T KOG4340|consen 428 EDYPMVEKIFRK 439 (459)
T ss_pred cccHHHHHHHHH
Confidence 999988887653
No 99
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=0.00071 Score=74.75 Aligned_cols=396 Identities=13% Similarity=0.127 Sum_probs=187.4
Q ss_pred HHHhCCChhHHHHHHHHHhhcCCCCCcccHHHHHHHHhccCChHHHHHHHHHh--hhcC-------CCChhhhhHHHHHH
Q 047992 31 FLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFL--NLVT-------EIDVFVKTKLLSVY 101 (868)
Q Consensus 31 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~--~~~~-------~~~~~~~~~li~~~ 101 (868)
.|.-.|+.+.|++..+.+. +...|..+.+.|.+.++++.|+--..++ ..|. +.+...-....-.-
T Consensus 737 fyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLA 810 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLA 810 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHH
Confidence 4555667777666655554 2345666666666666666655544443 1111 11112222222223
Q ss_pred HhcCChhHHHHHHhhcCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHH
Q 047992 102 AKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHS 181 (868)
Q Consensus 102 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 181 (868)
...|.+++|..++.+-.+-| .|=.-|-..|.+.+|+++-+.-.+-.++ .||-.-.+-+-..++.+.|.+.++
T Consensus 811 ieLgMlEeA~~lYr~ckR~D-----LlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRYD-----LLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHHH-----HHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHHHH
Confidence 44566666666665543322 2233444556666666665432211111 122222233333444444444443
Q ss_pred HHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhH
Q 047992 182 LVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTF 261 (868)
Q Consensus 182 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 261 (868)
. .|.. .+-...++. .++....++...+..+. .|.--..-+-..|+.+.|+.+|..... |
T Consensus 883 K---~~~h--afev~rmL~-----e~p~~~e~Yv~~~~d~~--L~~WWgqYlES~GemdaAl~~Y~~A~D---------~ 941 (1416)
T KOG3617|consen 883 K---AGVH--AFEVFRMLK-----EYPKQIEQYVRRKRDES--LYSWWGQYLESVGEMDAALSFYSSAKD---------Y 941 (1416)
T ss_pred h---cCCh--HHHHHHHHH-----hChHHHHHHHHhccchH--HHHHHHHHHhcccchHHHHHHHHHhhh---------h
Confidence 2 1110 000000110 11222222333333332 222222333346777777777776654 5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhch
Q 047992 262 NILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDL 341 (868)
Q Consensus 262 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 341 (868)
-++++..|-.|+.++|-++-++-- |......+...|-..|++.+|..+|.+.+ +|...|+.|-..
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEn 1006 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKEN 1006 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhc
Confidence 666777777788888877766543 55666677788888888888888887764 455566655433
Q ss_pred hhHHHHHH------------HHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCC--------------CCee
Q 047992 342 KALAMGME------------IHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKD--------------KDVY 395 (868)
Q Consensus 342 ~~~~~a~~------------i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~--------------~~~~ 395 (868)
+--++-.. .-.+..+.|. -....+..|-|.|.+..|.++--+-.+ .|+.
T Consensus 1007 d~~d~L~nlal~s~~~d~v~aArYyEe~g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ 1081 (1416)
T KOG3617|consen 1007 DMKDRLANLALMSGGSDLVSAARYYEELGG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPK 1081 (1416)
T ss_pred CHHHHHHHHHhhcCchhHHHHHHHHHHcch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHH
Confidence 22211100 0011111111 122334556677777766654322221 2444
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCe----eehhhh
Q 047992 396 SWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNT----ASWNSL 471 (868)
Q Consensus 396 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~----~~~~~l 471 (868)
..+--..-+..+.++++|..++-..++ |...+.. ++..++.-..++-+.|.-...-.|+. .....+
T Consensus 1082 ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~Alql-C~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqv 1151 (1416)
T KOG3617|consen 1082 LLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQL-CKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQV 1151 (1416)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHH-HhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHH
Confidence 444455556666777777776655442 1222222 22223333333333332111011222 233445
Q ss_pred HHHHHhcCChhHHHHHHHHh
Q 047992 472 IAGYQQLGQKNNALGVFRKM 491 (868)
Q Consensus 472 i~~~~~~g~~~~A~~~~~~m 491 (868)
...+.++|.+..|-+-|.+.
T Consensus 1152 ae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1152 AELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHhccchHHHHHHHhhh
Confidence 56677777777776666544
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.50 E-value=0.0046 Score=76.50 Aligned_cols=233 Identities=11% Similarity=0.044 Sum_probs=126.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcCC-------CC--eehHHHHHHHHHhcCChhHHHHHHHHhHhC----CCCC---Cee
Q 047992 367 NSLINMYSKCEELEAAERVFDMIKD-------KD--VYSWNSMIAGYCQAGYCGKAYELFIKMQES----DVPP---NVI 430 (868)
Q Consensus 367 ~~li~~y~~~g~~~~A~~vf~~~~~-------~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p---~~~ 430 (868)
+.+...+...|++++|...+++... +. ..++..+...+...|++++|...+++.... +... ...
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 574 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEF 574 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 3445556667777777777665542 11 123444555677788888888877765532 2111 111
Q ss_pred ehhhHHHHHHhcCCHHHHHHHHHhcccCCC---CCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCC-HHhHHHH
Q 047992 431 TWNVLISGYIQNGNEDEAVDLFQRMGKNDK---VKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPN-CVTILSV 506 (868)
Q Consensus 431 t~~~li~~~~~~g~~~~A~~~f~~m~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 506 (868)
.+..+...+...|++++|...+++...... .......+..+...+...|++++|.+.+.+.....-... ...+
T Consensus 575 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~--- 651 (903)
T PRK04841 575 LLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDW--- 651 (903)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhH---
Confidence 233344556667888888887776643210 001122233344556667777777776666532100000 0000
Q ss_pred HHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCce-e------cHHHHHHHHhc
Q 047992 507 LPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDII-T------WNSLICGYVLH 579 (868)
Q Consensus 507 l~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~-~------~~~li~~~~~~ 579 (868)
-..........+...|+.+.|.+.+.....+... . +..+..++...
T Consensus 652 ---------------------------~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 652 ---------------------------IANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred ---------------------------hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 0000011123445578888888887665432211 1 23456667778
Q ss_pred CChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhh
Q 047992 580 GFWHAALDLFDQMKSF----GLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITE 629 (868)
Q Consensus 580 g~~~~A~~l~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 629 (868)
|++++|..++++.... |..++. .+...+..++...|+.++|...+....+
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888877652 222322 3444555567777888888887777665
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.50 E-value=5.1e-05 Score=82.46 Aligned_cols=195 Identities=10% Similarity=-0.028 Sum_probs=105.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHh
Q 047992 538 MNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGL-KPNR--GTFLSIILAH 611 (868)
Q Consensus 538 ~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~a~ 611 (868)
...+...+..+|++++|.+.+++.. +.+...+..+...|...|++++|+..+++...... .|+. ..+..+...+
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 3344556666677777766666543 33445556666666677777777777776665311 1222 1233455556
Q ss_pred hccCChHHHHHHHHHhhhhcCCCCChh-H--HHHHHHhhhhcCChHHHHHH---HHhC-CCCCC---HHHHHHHHHHHHh
Q 047992 612 SLAGMVDLGKKVFCSITECYQIIPMIE-H--YSAMIDLYGRSGKLEEAMEF---IEDM-PIEPD---SSIWEALLTACRI 681 (868)
Q Consensus 612 ~~~g~~~~a~~~~~~m~~~~~~~p~~~-~--y~~lvd~l~r~g~~~eA~~~---i~~~-~~~p~---~~~w~~ll~a~~~ 681 (868)
...|+.++|..+|+.........+... . ...+...+...|..+.+... .... +..|+ .....+...++..
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence 667777777777776543211111111 1 11222233333433222222 1111 11111 1222344555667
Q ss_pred cCCHHHHHHHHHHHhccC---------CCCchhHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 682 HGNIDLAVLAIERLFDLE---------PGDVLIQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 682 ~~~~~~a~~~~~~~~~l~---------p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
.|+.+.|....+.+.... +......++.+..+...|++++|.+........
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 788888888887765422 123566688899999999999999876555443
No 102
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.48 E-value=6.8e-06 Score=83.34 Aligned_cols=180 Identities=14% Similarity=0.084 Sum_probs=114.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-Cc---eecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----H
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMSS--K-DI---ITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRG----T 603 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~-d~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t 603 (868)
....+..++..|.+.|++++|...|+++.. | +. ..|..+...|...|++++|+..|+++.+ ..|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHH
Confidence 455666677777777888888877776543 2 22 3556677777777888888888888776 445432 2
Q ss_pred HHHHHHHhhcc--------CChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 047992 604 FLSIILAHSLA--------GMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEAL 675 (868)
Q Consensus 604 ~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~l 675 (868)
+..+..++... |+.++|.+.|+.+...+.-.+.. +..+ .+.+...... . .....+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~--~~a~----~~~~~~~~~~---~--------~~~~~~ 172 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYA--PDAK----KRMDYLRNRL---A--------GKELYV 172 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhH--HHHH----HHHHHHHHHH---H--------HHHHHH
Confidence 33333344433 56666777777666543222211 1111 1111111110 0 011244
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCC---chhHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 676 LTACRIHGNIDLAVLAIERLFDLEPGD---VLIQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 676 l~a~~~~~~~~~a~~~~~~~~~l~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
...+...|+.+.|...++++++..|++ +.++..++.+|...|++++|.+..+.+..+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 556778899999999999999997765 478999999999999999999988877544
No 103
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.48 E-value=3.9e-05 Score=84.96 Aligned_cols=295 Identities=13% Similarity=0.149 Sum_probs=173.7
Q ss_pred HHHHHcCCCHHHHHHHHHhcCC--CCeeh-HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHH-h----
Q 047992 370 INMYSKCEELEAAERVFDMIKD--KDVYS-WNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYI-Q---- 441 (868)
Q Consensus 370 i~~y~~~g~~~~A~~vf~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~-~---- 441 (868)
...+...|++++|.+.++.-.. .|..+ .......+.+.|+.++|...|..+++.+ |+...|-..+..+. .
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 3456778888888888877554 24333 4556777888888888888888888775 45555544433332 1
Q ss_pred -cCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCCh-hHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHH
Q 047992 442 -NGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQK-NNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKV 519 (868)
Q Consensus 442 -~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 519 (868)
....+....+++++.... |.......+.-.+.....+ ..+...+..+...|+++-...+.++ +.........
T Consensus 89 ~~~~~~~~~~~y~~l~~~y---p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~L---y~d~~K~~~i 162 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY---PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPL---YKDPEKAAII 162 (517)
T ss_pred ccccHHHHHHHHHHHHHhC---ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHH---HcChhHHHHH
Confidence 224666777777776554 3333332232222222222 2334445555566654432222222 2211111111
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhc----CCHHHHHHHHhcCCCCCceec--HHHHHHHHhcCChHHHHHHHHHHH
Q 047992 520 KEIHGCVLRRSLESSLPVMNSLIDTYAKS----GNIVYSRTIFDGMSSKDIITW--NSLICGYVLHGFWHAALDLFDQMK 593 (868)
Q Consensus 520 ~~i~~~~~~~~~~~~~~~~~~Li~~y~k~----g~~~~A~~~f~~~~~~d~~~~--~~li~~~~~~g~~~~A~~l~~~m~ 593 (868)
..++..|... |...... =..-.+|....| .-+...|-..|+.++|++..++.+
T Consensus 163 -------------------~~l~~~~~~~l~~~~~~~~~~--~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI 221 (517)
T PF12569_consen 163 -------------------ESLVEEYVNSLESNGSFSNGD--DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI 221 (517)
T ss_pred -------------------HHHHHHHHHhhcccCCCCCcc--ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 1122222111 1110000 000112334345 555777888999999999999999
Q ss_pred HCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCC---CCC-
Q 047992 594 SFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPI---EPD- 668 (868)
Q Consensus 594 ~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~---~p~- 668 (868)
+ ..|.. -.|..-...+.|.|++++|....+...+ -..-|...-+--+..+.|+|++++|++.+....- .|-
T Consensus 222 ~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~--LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~ 297 (517)
T PF12569_consen 222 E--HTPTLVELYMTKARILKHAGDLKEAAEAMDEARE--LDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLS 297 (517)
T ss_pred h--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCccc
Confidence 8 67876 4556667788999999999999988765 1222333445557778899999999999887732 221
Q ss_pred -----HHHHHH--HHHHHHhcCCHHHHHHHHHHHhc
Q 047992 669 -----SSIWEA--LLTACRIHGNIDLAVLAIERLFD 697 (868)
Q Consensus 669 -----~~~w~~--ll~a~~~~~~~~~a~~~~~~~~~ 697 (868)
..+|-- ...+|.+.|++..|.+-+..+.+
T Consensus 298 ~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 298 NLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 225643 35578899999999998887755
No 104
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=0.00017 Score=70.28 Aligned_cols=350 Identities=13% Similarity=0.054 Sum_probs=167.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHHCCCCC-CcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Q 047992 125 WSAMIGAYSRDQRWREVVELFFLMVQDGLFP-DDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYV 203 (868)
Q Consensus 125 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 203 (868)
+++.+..+.+..++.+|++++..-.+. .| +....+.+-.++-...++..|...++++...-.+...+-.- -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY-~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY-QAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH-HHHHHH
Confidence 455566666677777777776665543 23 33344444444455556666666666554433211111000 112233
Q ss_pred HcCChHHHHHHHhhcCCCC-hhhHHHHHHH--HHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHH
Q 047992 204 KCGKLIWARRFFESMDEKD-GVAWNSMISG--YFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEM 280 (868)
Q Consensus 204 ~~g~~~~A~~~f~~~~~~d-~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 280 (868)
+.+.+.+|.++...|...+ ...-..-+.+ ....+++..+..+.++....| +..+.+.......+.|+.++|.+-
T Consensus 90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHH
Confidence 4455666666665555431 1111111111 123455555555555544321 333344444444556666666666
Q ss_pred HHHHHhc-CCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCC
Q 047992 281 VKRMESL-GITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGF 359 (868)
Q Consensus 281 ~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~ 359 (868)
|+...+- |.. ....||.-+ +..+.|++..|++...++.+.|++-.+..-..+..--.....+.....+|...+
T Consensus 167 FqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal---- 240 (459)
T KOG4340|consen 167 FQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL---- 240 (459)
T ss_pred HHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH----
Confidence 6665543 333 344444433 233455666666666666666654222110000000000000000000110000
Q ss_pred CCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCC-----CeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhh
Q 047992 360 TDDVLVGNSLINMYSKCEELEAAERVFDMIKDK-----DVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNV 434 (868)
Q Consensus 360 ~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 434 (868)
+..+|.-...+.+.|+.+.|.+.+..|+.+ |+++...+.-.- -.+++.+..+-+.-+...+ +-...||..
T Consensus 241 ---~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFAN 315 (459)
T KOG4340|consen 241 ---VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFAN 315 (459)
T ss_pred ---HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHH
Confidence 011233334566789999999999999864 666655443222 2344444444444444443 234568888
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHh
Q 047992 435 LISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKM 491 (868)
Q Consensus 435 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 491 (868)
++-.|+++.-++.|-+++.+-....-.-.+...|+.+=......-.+++|++-+..+
T Consensus 316 lLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 888999999999988888765332111122333333333333445566666555443
No 105
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.42 E-value=2.2e-06 Score=88.20 Aligned_cols=159 Identities=13% Similarity=0.202 Sum_probs=105.2
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhch
Q 047992 437 SGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVAS 516 (868)
Q Consensus 437 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 516 (868)
..+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..|. +..-
T Consensus 110 ~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~q----------- 168 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQ----------- 168 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHH-----------
T ss_pred HHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHH-----------
Confidence 4456677788777776543 24455556677788888888888888887743 2232 2211
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCceecHHHHHHHHhcCChHHHHHHHHHHH
Q 047992 517 NKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSS---KDIITWNSLICGYVLHGFWHAALDLFDQMK 593 (868)
Q Consensus 517 ~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 593 (868)
+..+.+..+.-.+.+.+|..+|+++.+ +++...|.+..++.+.|++++|.+++++..
T Consensus 169 --------------------La~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 169 --------------------LAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp --------------------HHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred --------------------HHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 233445555444578888888888764 355667888888899999999999999877
Q ss_pred HCCCCCCH-HHHHHHHHHhhccCCh-HHHHHHHHHhhhhcCCCCChh
Q 047992 594 SFGLKPNR-GTFLSIILAHSLAGMV-DLGKKVFCSITECYQIIPMIE 638 (868)
Q Consensus 594 ~~g~~p~~-~t~~~ll~a~~~~g~~-~~a~~~~~~m~~~~~~~p~~~ 638 (868)
+ ..|+. .|+..++.++.+.|.. +...+++.++...++-.|-+.
T Consensus 229 ~--~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 229 E--KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp C--C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred H--hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence 6 45655 6777777778888888 667788888887655444333
No 106
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=9e-06 Score=86.52 Aligned_cols=150 Identities=17% Similarity=0.163 Sum_probs=108.7
Q ss_pred HHHHHHHHHH-HHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHH
Q 047992 517 NKVKEIHGCV-LRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQM 592 (868)
Q Consensus 517 ~~~~~i~~~~-~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 592 (868)
....+++-.+ ...+...|+.+...|.-.|--.|+++.|...|+... +.|...||.+...++...+.++|+.-|++.
T Consensus 411 ~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rA 490 (579)
T KOG1125|consen 411 AHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRA 490 (579)
T ss_pred HHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHH
Confidence 3333443333 344545788999999999999999999999999764 558899999999999999999999999999
Q ss_pred HHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHH
Q 047992 593 KSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSI 671 (868)
Q Consensus 593 ~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~ 671 (868)
++ ++|+- .....+.-+|...|.++||.++|-+...-.... +.+ ++.| .++..+
T Consensus 491 Lq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks--------------~~~---------~~~~-~~se~i 544 (579)
T KOG1125|consen 491 LQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKS--------------RNH---------NKAP-MASENI 544 (579)
T ss_pred Hh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcc--------------ccc---------ccCC-cchHHH
Confidence 99 89987 345567778999999999998887654311000 000 0001 125568
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 047992 672 WEALLTACRIHGNIDLAVLAI 692 (868)
Q Consensus 672 w~~ll~a~~~~~~~~~a~~~~ 692 (868)
|.+|=.+....++.|.+.+++
T Consensus 545 w~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 545 WQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHHHHHHHcCCchHHHHhc
Confidence 888887777777777655543
No 107
>PF12854 PPR_1: PPR repeat
Probab=98.39 E-value=3.9e-07 Score=59.43 Aligned_cols=32 Identities=38% Similarity=0.581 Sum_probs=16.8
Q ss_pred CCccChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 047992 253 EIKLGVVTFNILIRSYNQLGQCDVAMEMVKRM 284 (868)
Q Consensus 253 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 284 (868)
|+.||..|||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555544
No 108
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=6.6e-05 Score=79.45 Aligned_cols=213 Identities=11% Similarity=0.050 Sum_probs=146.8
Q ss_pred HHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCce----------ecHHHHH
Q 047992 505 SVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDII----------TWNSLIC 574 (868)
Q Consensus 505 ~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~----------~~~~li~ 574 (868)
-+.++.-+..++..+.+-+...+.. ..+..-++.....|...|.+......-+...+..-. +...+..
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el--~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALEL--ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhH--hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 3444444555666666666666663 356666777778888888877766655543322111 2222445
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCCh--hHHHHHHHhhhhcCC
Q 047992 575 GYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMI--EHYSAMIDLYGRSGK 652 (868)
Q Consensus 575 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~y~~lvd~l~r~g~ 652 (868)
+|...++++.|+..|++.+..-..||..+ +...++++........ -+.|.. +--.+ ...+-+.|+
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~k-Gne~Fk~gd 373 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREK-GNEAFKKGD 373 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHH-HHHHHhccC
Confidence 66677889999999999887656665332 2234455555444332 233432 12222 556678999
Q ss_pred hHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 653 LEEAMEFIEDM-PIEPDS-SIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 653 ~~eA~~~i~~~-~~~p~~-~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
+.+|...+.++ ...|+. ..|.....++...|++..|..-+++.++++|+....|.-=+-++....+|++|.+....-.
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998 455654 4777777777889999999999999999999999999999999999999999999887554
Q ss_pred hc
Q 047992 731 EN 732 (868)
Q Consensus 731 ~~ 732 (868)
+.
T Consensus 454 e~ 455 (539)
T KOG0548|consen 454 EL 455 (539)
T ss_pred hc
Confidence 43
No 109
>PF12854 PPR_1: PPR repeat
Probab=98.36 E-value=3.6e-07 Score=59.57 Aligned_cols=34 Identities=41% Similarity=0.847 Sum_probs=31.8
Q ss_pred cCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHH
Q 047992 287 LGITPDVFTWTCMISGFAQNGRTSQALDLFKEMS 320 (868)
Q Consensus 287 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 320 (868)
+|+.||..|||+||.+|++.|+.++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4789999999999999999999999999999983
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.35 E-value=1.3e-05 Score=77.79 Aligned_cols=95 Identities=13% Similarity=0.166 Sum_probs=47.9
Q ss_pred hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHH-HhcCC--HHHHHHHHHHHhccCCCCchhHHHHHH
Q 047992 637 IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTAC-RIHGN--IDLAVLAIERLFDLEPGDVLIQRLILQ 711 (868)
Q Consensus 637 ~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~-~~~~~--~~~a~~~~~~~~~l~p~~~~~~~~l~~ 711 (868)
.+.|..+..+|...|++++|.+.+++. ...|+ ..+|..+..+. ...|+ .+.|..+++++++++|+++.++.+|+.
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~ 152 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLAS 152 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 334444444555555555555555544 23332 33444444432 34344 355555555555555555555555555
Q ss_pred HHhhcCCChhHHHHHHHHHh
Q 047992 712 IYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 712 ~y~~~g~~~~a~~~~~~m~~ 731 (868)
.|...|++++|...++.+.+
T Consensus 153 ~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 153 DAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 55555555555555555443
No 111
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.33 E-value=1.7e-05 Score=80.34 Aligned_cols=181 Identities=14% Similarity=0.009 Sum_probs=126.1
Q ss_pred CHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCC-C-ChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---Cce---ecH
Q 047992 499 NCVTILSVLPACAYLVASNKVKEIHGCVLRRSLE-S-SLPVMNSLIDTYAKSGNIVYSRTIFDGMSSK---DII---TWN 570 (868)
Q Consensus 499 ~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~-~-~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---d~~---~~~ 570 (868)
....+.....++...|+.+.+...+..+++..-. + ....+..+...|.+.|++++|...|+++.+. +.. .|.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3455666667788899999999999998874321 1 1246678899999999999999999987532 232 455
Q ss_pred HHHHHHHhc--------CChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHH
Q 047992 571 SLICGYVLH--------GFWHAALDLFDQMKSFGLKPNRGT-FLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYS 641 (868)
Q Consensus 571 ~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~ 641 (868)
.+..++.+. |+.++|++.|+++.. ..|+..- ...+..... . .... ..+..
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~----~------~~~~---------~~~~~ 170 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDY----L------RNRL---------AGKEL 170 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHH----H------HHHH---------HHHHH
Confidence 556666654 788999999999998 5676532 211111100 0 0000 01223
Q ss_pred HHHHhhhhcCChHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 047992 642 AMIDLYGRSGKLEEAMEFIEDM----PIEPD-SSIWEALLTACRIHGNIDLAVLAIERLFDLEP 700 (868)
Q Consensus 642 ~lvd~l~r~g~~~eA~~~i~~~----~~~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p 700 (868)
.+.+.+.+.|++++|...+++. |-.|. ...|..+..++...|+.+.|...++.+..--|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5677888999999999988876 43443 45888999999999999999998888766555
No 112
>PLN02789 farnesyltranstransferase
Probab=98.31 E-value=7.6e-05 Score=77.99 Aligned_cols=196 Identities=12% Similarity=0.071 Sum_probs=132.8
Q ss_pred chHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcC-CHHHHHHHHhcCC---CCCceecHHHHHHHHhcCCh--HHHHH
Q 047992 515 ASNKVKEIHGCVLRRSLES-SLPVMNSLIDTYAKSG-NIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFW--HAALD 587 (868)
Q Consensus 515 ~~~~~~~i~~~~~~~~~~~-~~~~~~~Li~~y~k~g-~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~--~~A~~ 587 (868)
..+.|......+++ +.| +..+++....++.+.| +++++...++++. +++...|+-..-.+.+.|.. +++++
T Consensus 52 ~serAL~lt~~aI~--lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 52 RSPRALDLTADVIR--LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 33444444444444 333 3445555555666666 5788888887654 45666787665556666653 67888
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhc---CCh----HHHHHH
Q 047992 588 LFDQMKSFGLKPN-RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRS---GKL----EEAMEF 659 (868)
Q Consensus 588 l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~---g~~----~eA~~~ 659 (868)
.++++++ ..|+ ...|.....++.+.|++++++++++.+.+.-.- +...|.-..-++.+. |.+ +++.++
T Consensus 130 ~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~--N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 130 FTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR--NNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC--chhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 8888887 5664 477887888888889999999999988874222 233333333333332 333 567777
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhc----CCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 047992 660 IEDM-PIEP-DSSIWEALLTACRIH----GNIDLAVLAIERLFDLEPGDVLIQRLILQIYAIC 716 (868)
Q Consensus 660 i~~~-~~~p-~~~~w~~ll~a~~~~----~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 716 (868)
++++ ...| |...|+.+.+.+..+ ++...|...+.++++.+|+++.+...|+.+|...
T Consensus 206 ~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 206 TIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 7555 5555 455999999998874 3456788899999999999999999999999864
No 113
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.29 E-value=0.00029 Score=76.55 Aligned_cols=218 Identities=13% Similarity=0.076 Sum_probs=135.2
Q ss_pred hhchHHHHHHHHHHHHhCCCCChhHHH---HHHHHHHhcCCHHHHHHHHhcCCCCCce---ecHHHHHHHHhcCChHHHH
Q 047992 513 LVASNKVKEIHGCVLRRSLESSLPVMN---SLIDTYAKSGNIVYSRTIFDGMSSKDII---TWNSLICGYVLHGFWHAAL 586 (868)
Q Consensus 513 ~~~~~~~~~i~~~~~~~~~~~~~~~~~---~Li~~y~k~g~~~~A~~~f~~~~~~d~~---~~~~li~~~~~~g~~~~A~ 586 (868)
.|+.+.+..++..+++. .+.+...+. .+.......|..+.+.+.++...+.+.. .+..+...+...|++++|+
T Consensus 56 ~g~~~~A~~~~~~~l~~-~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 134 (355)
T cd05804 56 AGDLPKALALLEQLLDD-YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAE 134 (355)
T ss_pred cCCHHHHHHHHHHHHHH-CCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 34555555555554442 122332332 2222223356666677776654333333 3344556788999999999
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCCh--hHHHHHHHhhhhcCChHHHHHHHHhC
Q 047992 587 DLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMI--EHYSAMIDLYGRSGKLEEAMEFIEDM 663 (868)
Q Consensus 587 ~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~y~~lvd~l~r~g~~~eA~~~i~~~ 663 (868)
+.+++..+ ..|+. ..+..+..++...|++++|..+++...+.....|.. ..|..+..++...|++++|.+.+++.
T Consensus 135 ~~~~~al~--~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 135 EAARRALE--LNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999 56765 556677778899999999999999887754433443 23567888999999999999999986
Q ss_pred -CCCC--CHHHHH----HHHHHHHhcCCHHHHHHH---HHHHhccCCCC--chhHHHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 664 -PIEP--DSSIWE----ALLTACRIHGNIDLAVLA---IERLFDLEPGD--VLIQRLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 664 -~~~p--~~~~w~----~ll~a~~~~~~~~~a~~~---~~~~~~l~p~~--~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
...| ...... .++.-....|..+.+.+. ......-.|.. ...-...+..+...|++++|.+..+.++.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 213 IAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred hccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2223 222211 333334455654444443 22222221221 22224577788899999999999888865
Q ss_pred cC
Q 047992 732 NT 733 (868)
Q Consensus 732 ~~ 733 (868)
..
T Consensus 293 ~~ 294 (355)
T cd05804 293 RA 294 (355)
T ss_pred HH
Confidence 43
No 114
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.28 E-value=0.003 Score=67.09 Aligned_cols=79 Identities=10% Similarity=0.134 Sum_probs=60.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHH
Q 047992 222 DGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMIS 301 (868)
Q Consensus 222 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 301 (868)
|+.+|+.||+-+-.. .++++.+.++++... .+.....|..-|.+-.+..+++..+++|.+....- .+...|..-|+
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHHH
Confidence 888999999977655 899999999998753 23355778888888889999999999998876552 35666776665
Q ss_pred HHH
Q 047992 302 GFA 304 (868)
Q Consensus 302 ~~~ 304 (868)
---
T Consensus 95 YVR 97 (656)
T KOG1914|consen 95 YVR 97 (656)
T ss_pred HHH
Confidence 443
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.26 E-value=1.4e-05 Score=87.26 Aligned_cols=213 Identities=19% Similarity=0.210 Sum_probs=124.5
Q ss_pred hhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhc
Q 047992 433 NVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAY 512 (868)
Q Consensus 433 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 512 (868)
..+...+...|-...|..+|+++. .|.-.|..|...|+..+|.++..+-.+ -+
T Consensus 402 ~~laell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~le--k~--------------- 454 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELE--KD--------------- 454 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhc--CC---------------
Confidence 556667777888888888888763 466677777777777777777666553 23
Q ss_pred hhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHH
Q 047992 513 LVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQM 592 (868)
Q Consensus 513 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 592 (868)
||+..|..|.|.....--++.|.++++....+-..+|+..+ .+.+++.++.+.|+.-
T Consensus 455 --------------------~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~---~~~~~fs~~~~hle~s 511 (777)
T KOG1128|consen 455 --------------------PDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLI---LSNKDFSEADKHLERS 511 (777)
T ss_pred --------------------CcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhcccc---ccchhHHHHHHHHHHH
Confidence 34444555555544444556666666655433222222221 2257777777777776
Q ss_pred HHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCC-CCH
Q 047992 593 KSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIE-PDS 669 (868)
Q Consensus 593 ~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~-p~~ 669 (868)
.+ +.|-. .||.+...+..+.++++.+.+.|..... +-+-+.+.|+.+-.+|.+.|+..+|...+++. ... .+.
T Consensus 512 l~--~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w 587 (777)
T KOG1128|consen 512 LE--INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHW 587 (777)
T ss_pred hh--cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCC
Confidence 66 45533 5666666666667777777777666554 22223445555555566666666666555554 222 222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 047992 670 SIWEALLTACRIHGNIDLAVLAIERLFDLE 699 (868)
Q Consensus 670 ~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~ 699 (868)
.+|....-....-|+.+.|.+++.+++++.
T Consensus 588 ~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 588 QIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred eeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 355555555555666666666666665544
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.23 E-value=4.9e-05 Score=73.41 Aligned_cols=135 Identities=21% Similarity=0.151 Sum_probs=109.6
Q ss_pred CCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC--CCCCCHHHHHH
Q 047992 597 LKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM--PIEPDSSIWEA 674 (868)
Q Consensus 597 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~--~~~p~~~~w~~ 674 (868)
..|+.......-.++...|+-+.+..+.......++.. .+.....+....+.|++.+|...+++. +-+||...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d--~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAIAYPKD--RELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhccCccc--HHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 45644322666677888888888888887765543333 333445888899999999999999998 55677889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcC
Q 047992 675 LLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENT 733 (868)
Q Consensus 675 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 733 (868)
+..+|-+.|+.+.|...+.+++++.|+++.++..|+..|.-.|+.++|..+...-...+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999877665544
No 117
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.22 E-value=8.8e-06 Score=74.73 Aligned_cols=97 Identities=12% Similarity=-0.043 Sum_probs=85.3
Q ss_pred CCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 047992 633 IIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLIL 710 (868)
Q Consensus 633 ~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 710 (868)
+.|+ ++......+...|++++|.+.++.. ...| +...|..+..+|...|+++.|...++++++++|+++.++..++
T Consensus 22 ~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 22 VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 4454 4566788899999999999999987 4555 5569999999999999999999999999999999999999999
Q ss_pred HHHhhcCCChhHHHHHHHHHh
Q 047992 711 QIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 711 ~~y~~~g~~~~a~~~~~~m~~ 731 (868)
.+|...|+.++|....+....
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999998776544
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.21 E-value=8.1e-05 Score=72.37 Aligned_cols=155 Identities=12% Similarity=0.142 Sum_probs=114.4
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHH
Q 047992 542 IDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLG 620 (868)
Q Consensus 542 i~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 620 (868)
+-+|.+.|+++....-.+++..+. . .|...++.++++..+++.++ ..|+. ..|..+...+...|+.++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 456788888777655544332221 0 12235667888888888877 45654 6777777888899999999
Q ss_pred HHHHHHhhhhcCCCC-ChhHHHHHHHhh-hhcCC--hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047992 621 KKVFCSITECYQIIP-MIEHYSAMIDLY-GRSGK--LEEAMEFIEDM-PIEPD-SSIWEALLTACRIHGNIDLAVLAIER 694 (868)
Q Consensus 621 ~~~~~~m~~~~~~~p-~~~~y~~lvd~l-~r~g~--~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~ 694 (868)
...|+...+ +.| +...+..+..++ .+.|+ .++|.+++++. ...|+ ..++..|..++...|+++.|...+++
T Consensus 93 ~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999998776 334 456677778764 67787 59999999998 55564 45888888889999999999999999
Q ss_pred HhccCCCCchhHHHH
Q 047992 695 LFDLEPGDVLIQRLI 709 (868)
Q Consensus 695 ~~~l~p~~~~~~~~l 709 (868)
+++++|.+..-+-++
T Consensus 170 aL~l~~~~~~r~~~i 184 (198)
T PRK10370 170 VLDLNSPRVNRTQLV 184 (198)
T ss_pred HHhhCCCCccHHHHH
Confidence 999999877665444
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.18 E-value=9e-05 Score=81.13 Aligned_cols=234 Identities=13% Similarity=0.076 Sum_probs=165.9
Q ss_pred CCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHH
Q 047992 359 FTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISG 438 (868)
Q Consensus 359 ~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 438 (868)
++|--..-..+...+.++|-..+|..+|+++. .|.-.|..|...|+..+|..+..+-.+. +||...|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhh
Confidence 44555566678889999999999999998764 5778899999999999999998888873 7888889888888
Q ss_pred HHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHH
Q 047992 439 YIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNK 518 (868)
Q Consensus 439 ~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 518 (868)
.....-++.|.++++..... +-..+.....++++++++.+.|+.-.+. .
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~--n--------------------- 515 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEI--N--------------------- 515 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhc--C---------------------
Confidence 88888889999998876432 1111111123356777777776654321 1
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHC
Q 047992 519 VKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSF 595 (868)
Q Consensus 519 ~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 595 (868)
+....+|-.+.-++.++++++.|.+.|..-. +.+..+||.+-.+|.++|+-.+|...+++..+.
T Consensus 516 -------------plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 516 -------------PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC 582 (777)
T ss_pred -------------ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 1134456666777788888988888887543 445678999999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHH
Q 047992 596 GLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMI 644 (868)
Q Consensus 596 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 644 (868)
+.. +...|......-...|..++|++.+.++........+.++..-++
T Consensus 583 n~~-~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv 630 (777)
T KOG1128|consen 583 NYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIV 630 (777)
T ss_pred CCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHH
Confidence 532 223344444445677888888888888766443333555554444
No 120
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.17 E-value=0.00017 Score=84.15 Aligned_cols=231 Identities=14% Similarity=0.129 Sum_probs=156.0
Q ss_pred CCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCC-----HHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChh
Q 047992 462 KRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPN-----CVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLP 536 (868)
Q Consensus 462 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~ 536 (868)
|.+...|-..|+-..+.++.++|.+++++.+.. +.+. .-.|.++++.--.-|.-+...++++++.+ +-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHH
Confidence 445567777777777788888887777776532 2121 22455555555555566666777777766 444456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCC---CceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-Hhh
Q 047992 537 VMNSLIDTYAKSGNIVYSRTIFDGMSSK---DIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIIL-AHS 612 (868)
Q Consensus 537 ~~~~Li~~y~k~g~~~~A~~~f~~~~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~ 612 (868)
++..|...|.+.+..++|-++|+.|.++ ....|...+..+.++.+.++|-+++++.++.=.+-+++-|.+.-. .-.
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 7888888999999999999999888743 556788888888888888888899888888422223555554332 234
Q ss_pred ccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC---CCCCCHH--HHHHHHHHHHhcCCHHH
Q 047992 613 LAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM---PIEPDSS--IWEALLTACRIHGNIDL 687 (868)
Q Consensus 613 ~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~---~~~p~~~--~w~~ll~a~~~~~~~~~ 687 (868)
+.|+.+.|+.+|+.....|.- ..+.|+..+|.-.+.|..+.+.++|++. .+.|.-. .+.-.|.--..|||-+.
T Consensus 1612 k~GDaeRGRtlfEgll~ayPK--RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPK--RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCcc--chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 678888888888887775543 3444777788888888888888888776 3333322 55555665666777666
Q ss_pred HHHHHHHHhc
Q 047992 688 AVLAIERLFD 697 (868)
Q Consensus 688 a~~~~~~~~~ 697 (868)
.+.+-.++.|
T Consensus 1690 vE~VKarA~E 1699 (1710)
T KOG1070|consen 1690 VEYVKARAKE 1699 (1710)
T ss_pred HHHHHHHHHH
Confidence 6666555544
No 121
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.15 E-value=1.4e-05 Score=71.94 Aligned_cols=95 Identities=13% Similarity=0.079 Sum_probs=82.3
Q ss_pred ChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 047992 636 MIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIY 713 (868)
Q Consensus 636 ~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 713 (868)
+.+..-.+...+...|++++|+.+++-. .+.|. ..-|-.|...|+..|+++.|..++.+++.++|+|+.+|..++..|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3445555667788899999999999987 45564 458999999999999999999999999999999999999999999
Q ss_pred hhcCCChhHHHHHHHHH
Q 047992 714 AICGKPEDALKVRKLER 730 (868)
Q Consensus 714 ~~~g~~~~a~~~~~~m~ 730 (868)
...|+.++|.+-.+...
T Consensus 114 L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 114 LACDNVCYAIKALKAVV 130 (157)
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 99999999999766543
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.12 E-value=0.00026 Score=82.34 Aligned_cols=65 Identities=11% Similarity=0.211 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCC
Q 047992 671 IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRRNS 737 (868)
Q Consensus 671 ~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~ 737 (868)
+|--|-.-|+..++++.+..+++++++.+|.|..+..-|+..|. +++.+-..+-+.++-.|++..
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~~~~~ee~l~~s~l~~~ 289 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKDHSLLEDYLKMSDIGNN 289 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccCcchHHHHHHHhccccC
Confidence 44455566778888999999999999999999999888888887 777776667777776666543
No 123
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.11 E-value=4.4e-06 Score=55.47 Aligned_cols=34 Identities=38% Similarity=0.653 Sum_probs=32.5
Q ss_pred eecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 047992 567 ITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN 600 (868)
Q Consensus 567 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 600 (868)
++||+||.+|++.|+.++|.++|++|.+.|++||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999998
No 124
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.11 E-value=0.016 Score=61.83 Aligned_cols=148 Identities=14% Similarity=0.141 Sum_probs=103.5
Q ss_pred hhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCC-CccHHHHHHHHHHcCCCHHHHHHHHH
Q 047992 309 TSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTD-DVLVGNSLINMYSKCEELEAAERVFD 387 (868)
Q Consensus 309 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~vf~ 387 (868)
.+...+.++++...-..--..+|...++...+...++.|+.+|..+.+.+..+ ++++.++++..|+ .++.+.|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 45555666666543333333567777888888888888888888888877666 7888888888776 567788888887
Q ss_pred hcCC--C-CeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCe--eehhhHHHHHHhcCCHHHHHHHHHhccc
Q 047992 388 MIKD--K-DVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNV--ITWNVLISGYIQNGNEDEAVDLFQRMGK 457 (868)
Q Consensus 388 ~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~li~~~~~~g~~~~A~~~f~~m~~ 457 (868)
.-.. + ++.--+..+.-+...++-..|..+|++....++.|+. ..|..+|+-=+.-|++..+.++-+++..
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6543 2 3334456677777778888888888888877555443 5677777777777887777777766644
No 125
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.10 E-value=0.00014 Score=84.94 Aligned_cols=200 Identities=11% Similarity=0.044 Sum_probs=166.9
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC--------CceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 047992 532 ESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSK--------DIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGT 603 (868)
Q Consensus 532 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~--------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 603 (868)
+....+|-..+......++++.|++++++.... -.-.|.++++....+|.-+...++|+++.+. ---...
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 345677888888888999999999999976531 2347999999999999888999999999883 323467
Q ss_pred HHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 047992 604 FLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD---SSIWEALLTAC 679 (868)
Q Consensus 604 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~---~~~w~~ll~a~ 679 (868)
|..|+.-|...+..++|-++|+.|.++++ .....|...++.|.|...-++|..+++++ ..-|. ..+..-....-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999999988 45566999999999999999999999886 33333 33555566667
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcCCC
Q 047992 680 RIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRR 735 (868)
Q Consensus 680 ~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 735 (868)
.++||.|+|+.+++.++.-.|.-...|..+..+-...|.-+.+..+.++.-..++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 88999999999999999999999999999999999999999999998888766553
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.09 E-value=0.00017 Score=83.09 Aligned_cols=138 Identities=9% Similarity=0.002 Sum_probs=110.4
Q ss_pred CCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCC-ChhHHH
Q 047992 564 KDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIP-MIEHYS 641 (868)
Q Consensus 564 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~ 641 (868)
.++..+-.+.....+.|..++|+.+++...+ +.||. ..+..+..++.+.+.+++|+..+++... ..| +..+..
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence 3466677777888888999999999999888 78877 5667777888899999999998888765 344 456777
Q ss_pred HHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhH
Q 047992 642 AMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQ 706 (868)
Q Consensus 642 ~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 706 (868)
.+..+|...|+++||.++|++. ...|+ ..+|-++..+....|+.+.|..+++++++...+-+..|
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 7888899999999999999988 23344 56888899999999999999999999998876555554
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.08 E-value=0.00082 Score=70.80 Aligned_cols=122 Identities=22% Similarity=0.178 Sum_probs=90.6
Q ss_pred HHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 047992 606 SIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRIHG 683 (868)
Q Consensus 606 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~ 683 (868)
+..-.....|..++|+..++.+.... +-++.-....++++.++++.++|.+.++++ ...|+ ...|-++..++...|
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAAQ--PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcC
Confidence 33344556788888888888776632 223444556678888888888888888887 55666 557788888888888
Q ss_pred CHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 684 NIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 684 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
+...|.+...+.+.-+|+|+..|.+|+..|...|+-.++..-+..+
T Consensus 389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 8888888888888888888888888888888877777777666544
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.07 E-value=0.00022 Score=82.18 Aligned_cols=130 Identities=18% Similarity=-0.013 Sum_probs=110.6
Q ss_pred CCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCCh-hHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHH-HHH
Q 047992 597 LKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMI-EHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSS-IWE 673 (868)
Q Consensus 597 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~-~w~ 673 (868)
...+...+..|..+-.+.|..++|...++...+ +.|+. .....+...|.+.++++||...+++. +..|+.. ...
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 445567788888889999999999999999876 56764 35667788999999999999999998 7778776 455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 674 ALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 674 ~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
.+..++...|.++.|..+|++++...|+++.+++.+++.+-..|+.++|....+..
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55556678899999999999999999999999999999999999999999865443
No 129
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.02 E-value=3.7e-05 Score=70.12 Aligned_cols=94 Identities=24% Similarity=0.344 Sum_probs=70.5
Q ss_pred hHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhh
Q 047992 638 EHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAI 715 (868)
Q Consensus 638 ~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 715 (868)
.....++..+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++++|+++..+..++.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 44556666677777777777777776 4344 445777777777788888888888888888888888888888888888
Q ss_pred cCCChhHHHHHHHHHh
Q 047992 716 CGKPEDALKVRKLERE 731 (868)
Q Consensus 716 ~g~~~~a~~~~~~m~~ 731 (868)
.|++++|.+..+...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 8888888887765543
No 130
>PLN02789 farnesyltranstransferase
Probab=97.99 E-value=0.0004 Score=72.61 Aligned_cols=182 Identities=10% Similarity=0.059 Sum_probs=131.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhcc
Q 047992 540 SLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHG-FWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLA 614 (868)
Q Consensus 540 ~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~ 614 (868)
.+-..+.+.+..++|....+++. +.+...|+.-...+...| ..+++++.++++.+ ..|+. ..|..-...+.+.
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~--~npknyqaW~~R~~~l~~l 119 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE--DNPKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH--HCCcchHHhHHHHHHHHHc
Confidence 33445566788889998888765 456668887777777777 57999999999998 45554 4555444445555
Q ss_pred CC--hHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhc---CC--
Q 047992 615 GM--VDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIE-PDSSIWEALLTACRIH---GN-- 684 (868)
Q Consensus 615 g~--~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~-p~~~~w~~ll~a~~~~---~~-- 684 (868)
|. .+++..+++.+.+ +.| +...|.-...++.+.|++++|+++++++ ... -|..+|+......... |.
T Consensus 120 ~~~~~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 120 GPDAANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred CchhhHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccc
Confidence 65 3677888888876 334 4556777788888999999999999998 333 4566898887776544 22
Q ss_pred --HHHHHHHHHHHhccCCCCchhHHHHHHHHhhc----CCChhHHHHH
Q 047992 685 --IDLAVLAIERLFDLEPGDVLIQRLILQIYAIC----GKPEDALKVR 726 (868)
Q Consensus 685 --~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~----g~~~~a~~~~ 726 (868)
.+.+.....++++++|+|.++|..+..+|... ++..+|.+.-
T Consensus 197 ~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 197 AMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 24677777899999999999999999999773 3334455443
No 131
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.97 E-value=0.00061 Score=66.05 Aligned_cols=180 Identities=15% Similarity=0.095 Sum_probs=130.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSIIL 609 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~ 609 (868)
|..+ ..+-..|.-.|+-+.+..+..... .+|....+..+....+.|++.+|+..|.+... ..| |..+++.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHH
Confidence 4455 556667777788887777777643 34555666678888889999999999999887 555 5578888888
Q ss_pred HhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHH
Q 047992 610 AHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPI-E-PDSSIWEALLTACRIHGNIDL 687 (868)
Q Consensus 610 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~-~-p~~~~w~~ll~a~~~~~~~~~ 687 (868)
+|.+.|+.++|..-|.+..+-.+-.|.+ ++-|.-.|.-.|+++.|+.++...-. . .|..+-..|.-+-...|+++.
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~~p~~--~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPNEPSI--ANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccCCchh--hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHH
Confidence 8899999999999999888866666655 66666677778999999999988722 2 366677888888888999999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHhhcCCC
Q 047992 688 AVLAIERLFDLEPGDVLIQRLILQIYAICGKP 719 (868)
Q Consensus 688 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 719 (868)
|+.++.+-+..+- -......|.++....|.|
T Consensus 221 A~~i~~~e~~~~~-~~~~~~~l~~~~~~~~~~ 251 (257)
T COG5010 221 AEDIAVQELLSEQ-AANNVAALRAAASQSGAW 251 (257)
T ss_pred HHhhccccccchh-HhhHHHHHHHhhcccchh
Confidence 9888776554332 112233455555555555
No 132
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.97 E-value=1.2e-05 Score=53.20 Aligned_cols=35 Identities=31% Similarity=0.523 Sum_probs=32.8
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCc
Q 047992 123 YTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDD 157 (868)
Q Consensus 123 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 157 (868)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.96 E-value=0.00021 Score=76.20 Aligned_cols=121 Identities=17% Similarity=0.145 Sum_probs=97.9
Q ss_pred HHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 047992 605 LSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIH 682 (868)
Q Consensus 605 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~ 682 (868)
.+++..+...+.+++|..+|+.+.+.. |+ ....++.++...++-.+|.+++++. ...| +...+......|...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~---pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD---PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC---Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 456666777788888888888887642 54 3555777777788888898888877 3334 555666666678899
Q ss_pred CCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 683 GNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 683 ~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
++.+.|..+++++.++.|++...|..|+.+|...|+|++|.-....+-
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999887664
No 134
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.96 E-value=0.0024 Score=63.87 Aligned_cols=106 Identities=9% Similarity=0.101 Sum_probs=72.2
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCC--HHHHHH---HHHHhhccCChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhc
Q 047992 577 VLHGFWHAALDLFDQMKSFGLKPN--RGTFLS---IILAHSLAGMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRS 650 (868)
Q Consensus 577 ~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~---ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~ 650 (868)
...+++.++++..+...+ ..|. .+++++ +-.++...|.+.+|++......+ +.|+ +..+.--.++|.-.
T Consensus 280 ie~~~~t~cle~ge~vlk--~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~---~d~~dv~~l~dRAeA~l~d 354 (504)
T KOG0624|consen 280 IEEKHWTECLEAGEKVLK--NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD---IDPDDVQVLCDRAEAYLGD 354 (504)
T ss_pred HhhhhHHHHHHHHHHHHh--cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh---cCchHHHHHHHHHHHHhhh
Confidence 456778888888888777 3454 244433 22344677889999988877664 6676 77787778888888
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 047992 651 GKLEEAMEFIEDM-PIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEP 700 (868)
Q Consensus 651 g~~~eA~~~i~~~-~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p 700 (868)
..+++|+.-++++ ...|+.. ....|.+-++++.++..
T Consensus 355 E~YD~AI~dye~A~e~n~sn~-------------~~reGle~Akrlkkqs~ 392 (504)
T KOG0624|consen 355 EMYDDAIHDYEKALELNESNT-------------RAREGLERAKRLKKQSG 392 (504)
T ss_pred HHHHHHHHHHHHHHhcCcccH-------------HHHHHHHHHHHHHHHhc
Confidence 8999999999987 4555432 23455555666665543
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.91 E-value=0.0002 Score=65.21 Aligned_cols=115 Identities=11% Similarity=0.088 Sum_probs=89.8
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CC
Q 047992 588 LFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PI 665 (868)
Q Consensus 588 l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~ 665 (868)
+|++.+. ..|+. .....+...+...|+.++|...|+...+.. ..+...+..+..++.+.|++++|.+.+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566666 56655 445566677788899999999998887632 235566788889999999999999998887 34
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhH
Q 047992 666 EP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQ 706 (868)
Q Consensus 666 ~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 706 (868)
.| +...|..+...+...|+.+.|...++++++++|++....
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 44 456888888888999999999999999999999887643
No 136
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.89 E-value=0.027 Score=58.94 Aligned_cols=198 Identities=15% Similarity=0.114 Sum_probs=116.2
Q ss_pred HhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHH-------HHHHHHHhc----CCHHHHHHHHhcCCCCCcee-
Q 047992 501 VTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMN-------SLIDTYAKS----GNIVYSRTIFDGMSSKDIIT- 568 (868)
Q Consensus 501 ~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-------~Li~~y~k~----g~~~~A~~~f~~~~~~d~~~- 568 (868)
.+|..+|+.+.+.+....+.+.+..+.- ++|+..+.. +|.++.+.- -++.+-..+++.+...|+..
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq 376 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ 376 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH
Confidence 4677777778888888888887777665 555544332 233333311 11223334444444444321
Q ss_pred ----c-HHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHH
Q 047992 569 ----W-NSLICGYVLHGF-WHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSA 642 (868)
Q Consensus 569 ----~-~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~ 642 (868)
+ ---+.-+-..|. -++|+++++..++ +.|...-.-+.+.-. -.+.+..+... ....-
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~f--------vKq~Y~qaLs~-------~~~~r 439 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLF--------VKQAYKQALSM-------HAIPR 439 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHH--------HHHHHHHHHhh-------hhHHH
Confidence 1 111222334454 6778888887777 555443221111100 11222222221 11111
Q ss_pred HHHhhhhcCChHHHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 047992 643 MIDLYGRSGKLEEAMEFIEDMPIEP----DSSIWEALLTA--CRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAIC 716 (868)
Q Consensus 643 lvd~l~r~g~~~eA~~~i~~~~~~p----~~~~w~~ll~a--~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 716 (868)
++ .-+++++...+.| +..+-+-|..| ...+|++.++.-...=+.++.| ++.+|.+++-.....
T Consensus 440 Ll----------kLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~ 508 (549)
T PF07079_consen 440 LL----------KLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMEN 508 (549)
T ss_pred HH----------HHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHH
Confidence 22 2355666665544 33466777777 3679999999999999999999 899999999999999
Q ss_pred CCChhHHHHHHH
Q 047992 717 GKPEDALKVRKL 728 (868)
Q Consensus 717 g~~~~a~~~~~~ 728 (868)
.+++||....+.
T Consensus 509 k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 509 KRYQEAWEYLQK 520 (549)
T ss_pred hhHHHHHHHHHh
Confidence 999999998764
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.85 E-value=0.0012 Score=69.68 Aligned_cols=147 Identities=18% Similarity=0.149 Sum_probs=112.4
Q ss_pred ceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHH
Q 047992 566 IITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIIL-AHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMI 644 (868)
Q Consensus 566 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 644 (868)
...|....-.+...|+.++|+..++.++. -.||.+.|..+.. .+...|++++|.+.|+.+....... ....-.+.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~--~~l~~~~a 381 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS--PLLQLNLA 381 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc--cHHHHHHH
Confidence 33444455566678888889998888887 5777776665554 5678888999999888887643332 23345567
Q ss_pred HhhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhH
Q 047992 645 DLYGRSGKLEEAMEFIEDM--PIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDA 722 (868)
Q Consensus 645 d~l~r~g~~~eA~~~i~~~--~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 722 (868)
++|...|+..||+..++.. ..+.|+..|..|..+|-..||..++..+ .+..|+-.|+|++|
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A 444 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQA 444 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHH
Confidence 8889999999999999987 3445677999999999999998888765 45678889999999
Q ss_pred HHHHHHHHhcC
Q 047992 723 LKVRKLERENT 733 (868)
Q Consensus 723 ~~~~~~m~~~~ 733 (868)
....+..+++.
T Consensus 445 ~~~l~~A~~~~ 455 (484)
T COG4783 445 IIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHhc
Confidence 99888777664
No 138
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.83 E-value=0.11 Score=59.34 Aligned_cols=216 Identities=16% Similarity=0.143 Sum_probs=103.8
Q ss_pred cCChhHHHHHHHHHHHcCCccChhhHHHHHHHH--HhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHH
Q 047992 236 IGENDEAHRLFDKMCREEIKLGVVTFNILIRSY--NQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQAL 313 (868)
Q Consensus 236 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 313 (868)
.+++..|+.....+.+. .|+. .|...+.++ .+.|+.++|..+++.....+.. |..|...+-.+|...++.++|.
T Consensus 22 ~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 34555555555555443 1221 222223322 3456666666555555544444 5566666666666666666666
Q ss_pred HHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCC----------CHHHHH
Q 047992 314 DLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCE----------ELEAAE 383 (868)
Q Consensus 314 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g----------~~~~A~ 383 (868)
.+|+... +.-|+..-...++.++.+.+++..-.++--++.+ .++.+.+.+=++++.+...- -+.-|.
T Consensus 98 ~~Ye~~~--~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERAN--QKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHH--hhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 6666653 3345555555566666666655544443333333 22333333333444333211 122344
Q ss_pred HHHHhcCCCC-e-eh---HHHHHHHHHhcCChhHHHHHHH-HhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhccc
Q 047992 384 RVFDMIKDKD-V-YS---WNSMIAGYCQAGYCGKAYELFI-KMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGK 457 (868)
Q Consensus 384 ~vf~~~~~~~-~-~~---~~~li~~~~~~g~~~~A~~l~~-~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~ 457 (868)
+.++.+.+.+ . .+ .-.-...+-..|++++|++++. ...+.-.+-+...-+.-++.+...+++.+-.++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4444444332 1 11 1111223345566777777763 333322222333334556666777777766666666554
Q ss_pred C
Q 047992 458 N 458 (868)
Q Consensus 458 ~ 458 (868)
.
T Consensus 255 k 255 (932)
T KOG2053|consen 255 K 255 (932)
T ss_pred h
Confidence 4
No 139
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.83 E-value=0.00016 Score=71.33 Aligned_cols=100 Identities=19% Similarity=0.186 Sum_probs=65.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChH
Q 047992 576 YVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLE 654 (868)
Q Consensus 576 ~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~ 654 (868)
..+.+++.+|+..|.+.++ +.|+. +-|..-..|+++.|..+.|++-.++.+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al-------------------------- 142 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL-------------------------- 142 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH--------------------------
Confidence 4556777777777777777 56644 333334444555555444444443332
Q ss_pred HHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 047992 655 EAMEFIEDMPIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQI 712 (868)
Q Consensus 655 eA~~~i~~~~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 712 (868)
.+.|... .|..|.-|+...|+++.|+++|++++++||+|..+...|...
T Consensus 143 ---------~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 143 ---------SIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred ---------hcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 3455554 788888888888999999999999999999888666555543
No 140
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.83 E-value=2.4e-05 Score=51.38 Aligned_cols=34 Identities=44% Similarity=0.619 Sum_probs=28.9
Q ss_pred ceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 047992 566 IITWNSLICGYVLHGFWHAALDLFDQMKSFGLKP 599 (868)
Q Consensus 566 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 599 (868)
+.+||++|.+|++.|+.+.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578888888888888888888888888888887
No 141
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.74 E-value=4.4e-05 Score=50.14 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=30.6
Q ss_pred ceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCC
Q 047992 122 LYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFP 155 (868)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p 155 (868)
+.+||.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.69 E-value=0.00082 Score=71.70 Aligned_cols=127 Identities=13% Similarity=0.136 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhcc
Q 047992 536 PVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLA 614 (868)
Q Consensus 536 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~ 614 (868)
.+-.+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++.++ ..|+. .....-...|...
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhc
Confidence 44456677777788999999999998887777777788888888888899999999887 45544 3333344457788
Q ss_pred CChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhCCCCC
Q 047992 615 GMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDMPIEP 667 (868)
Q Consensus 615 g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p 667 (868)
|+.+.|+.+.+.+.+ ..|+ .+.|..|+.+|...|++++|.-.++.+|+-|
T Consensus 248 ~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 248 KKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 889999999888876 4554 5588889999999999999999999887554
No 143
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.013 Score=57.02 Aligned_cols=166 Identities=13% Similarity=0.103 Sum_probs=105.6
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 047992 522 IHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR 601 (868)
Q Consensus 522 i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 601 (868)
+.+.+.......+......-...|.+.|+.++|.+.......-+....|.- .+.+..+.+-|.+.+++|.+ +. +.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~Vq--I~lk~~r~d~A~~~lk~mq~--id-ed 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQ--ILLKMHRFDLAEKELKKMQQ--ID-ED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHc--cc-hH
Confidence 334444443444444444445567777888888877776433333333322 33455667777777777766 22 33
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHH
Q 047992 602 GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM--PIEPDSSIWEALLTAC 679 (868)
Q Consensus 602 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~--~~~p~~~~w~~ll~a~ 679 (868)
.|.+.+..|+ |.+-.-.+++.+|+-+|++| ...|++.+.+..+.+|
T Consensus 170 ~tLtQLA~aw--------------------------------v~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~ 217 (299)
T KOG3081|consen 170 ATLTQLAQAW--------------------------------VKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCH 217 (299)
T ss_pred HHHHHHHHHH--------------------------------HHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHH
Confidence 4544444332 33334455677777777777 3677888888888888
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHH
Q 047992 680 RIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALK 724 (868)
Q Consensus 680 ~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 724 (868)
...||++.|+...+.++.-+|+++.+...+.-.---.|+-.++..
T Consensus 218 l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 218 LQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred HHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHH
Confidence 888999999999999999888888777666655566677766544
No 144
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.66 E-value=4.1e-05 Score=62.99 Aligned_cols=77 Identities=25% Similarity=0.430 Sum_probs=58.3
Q ss_pred cCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHH
Q 047992 650 SGKLEEAMEFIEDM----PIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKV 725 (868)
Q Consensus 650 ~g~~~eA~~~i~~~----~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 725 (868)
.|++++|+.+++++ |..|+...|-.+..++...|+++.|..++++ .+.+|.++....+++..|...|+|++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777766 3223556777778888888888888888888 888888878888889999999999999887
Q ss_pred HH
Q 047992 726 RK 727 (868)
Q Consensus 726 ~~ 727 (868)
.+
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 145
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.64 E-value=5.6e-05 Score=48.38 Aligned_cols=31 Identities=45% Similarity=0.865 Sum_probs=27.1
Q ss_pred eecHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 047992 567 ITWNSLICGYVLHGFWHAALDLFDQMKSFGL 597 (868)
Q Consensus 567 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 597 (868)
++||+||.+|++.|+.++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988764
No 146
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.63 E-value=0.0091 Score=69.87 Aligned_cols=88 Identities=10% Similarity=0.202 Sum_probs=63.5
Q ss_pred hHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCC
Q 047992 502 TILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGF 581 (868)
Q Consensus 502 t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~ 581 (868)
.+..+..+|.+.|..+++..+++.+++.. +.|+.+.|-+...|+.. +++.|.+++.+.. .-|....+
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV-----------~~~i~~kq 184 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI-----------YRFIKKKQ 184 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH-----------HHHHhhhc
Confidence 44455555666666666666666666633 33788888899999988 9999988887642 33777778
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHH
Q 047992 582 WHAALDLFDQMKSFGLKPNRGTF 604 (868)
Q Consensus 582 ~~~A~~l~~~m~~~g~~p~~~t~ 604 (868)
+.++.+++.++.. ..|+.+.+
T Consensus 185 ~~~~~e~W~k~~~--~~~~d~d~ 205 (906)
T PRK14720 185 YVGIEEIWSKLVH--YNSDDFDF 205 (906)
T ss_pred chHHHHHHHHHHh--cCcccchH
Confidence 8899999999888 56766544
No 147
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.62 E-value=3.5e-05 Score=50.19 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=30.7
Q ss_pred HHHHhccCCCCchhHHHHHHHHhhcCCChhHH
Q 047992 692 IERLFDLEPGDVLIQRLILQIYAICGKPEDAL 723 (868)
Q Consensus 692 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 723 (868)
++++++++|+|+.+|..|+++|...|++++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68999999999999999999999999999986
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.62 E-value=0.0012 Score=60.77 Aligned_cols=113 Identities=19% Similarity=0.153 Sum_probs=62.5
Q ss_pred cCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCHHH
Q 047992 614 AGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDMP-IEPDS----SIWEALLTACRIHGNIDL 687 (868)
Q Consensus 614 ~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~~-~~p~~----~~w~~ll~a~~~~~~~~~ 687 (868)
.|+...+...++.+.++++-.| .....-.+.+.+...|++++|.+.++... ..||. ..+-.|...+...|+++.
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555666655544432 12233334455666666666666666651 12332 133344455556677777
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHH
Q 047992 688 AVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRK 727 (868)
Q Consensus 688 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 727 (868)
|...++.+ .-.|-.+..+.+++++|.+.|++++|...++
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 76666552 3333445566677777777777777776554
No 149
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.0021 Score=61.82 Aligned_cols=177 Identities=15% Similarity=0.143 Sum_probs=131.9
Q ss_pred CCHHHHHHHHhcCCC--------CCce-ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHhhccCChH
Q 047992 549 GNIVYSRTIFDGMSS--------KDII-TWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSII-LAHSLAGMVD 618 (868)
Q Consensus 549 g~~~~A~~~f~~~~~--------~d~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~ 618 (868)
.+.++..+++..+.. +|.. .+..++-+....|+.+.|...++++... + |+..-...+= .-+-..|..+
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchh
Confidence 467888888876642 2222 2333445556788999999999998874 3 6553222221 1245579999
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047992 619 LGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM--PIEPDSSIWEALLTACRIHGNIDLAVLAIERLF 696 (868)
Q Consensus 619 ~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~--~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~ 696 (868)
+|.+++++..++- +-+...|---+-++-..|+--+|++-+... .+..|...|.-|...|...|+++.|.-.+|+++
T Consensus 104 ~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999998852 334556766777777788888888887776 577889999999999999999999999999999
Q ss_pred ccCCCCchhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 697 DLEPGDVLIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 697 ~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
=+.|-++-.+..|+.++.-.|--+...--|+.-
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy 214 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYY 214 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999999998888755544444433
No 150
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.60 E-value=0.0011 Score=63.30 Aligned_cols=131 Identities=12% Similarity=0.117 Sum_probs=80.6
Q ss_pred CceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHH
Q 047992 565 DIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN--RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSA 642 (868)
Q Consensus 565 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~ 642 (868)
....+..+...|...|++++|+..|++..+.+..|+ ...+..+..++.+.|+.++|..++....+... -+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP--KQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHH
Confidence 344566667777777888888888887776433332 24556666667777777777777776665321 12334445
Q ss_pred HHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 047992 643 MIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGK 718 (868)
Q Consensus 643 lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 718 (868)
+..++...|+...|..-.+.. ...++.|...++++++++|++ |..+.+.+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 555565555555444332221 122677889999999999987 5566666666665
No 151
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00081 Score=68.97 Aligned_cols=176 Identities=12% Similarity=0.040 Sum_probs=113.5
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCceec-HHHHH--HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHH
Q 047992 543 DTYAKSGNIVYSRTIFDGMSSKDIITW-NSLIC--GYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDL 619 (868)
Q Consensus 543 ~~y~k~g~~~~A~~~f~~~~~~d~~~~-~~li~--~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 619 (868)
.++.-.|+.++|.++--.+..-|.+.- -..+. ++-..++.+.|+..|++.+. +.||+.+--. .-.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~----------~~~ 244 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKS----------ASM 244 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHh----------Hhh
Confidence 455566777777666554443333322 12222 33456788999999999888 6787654221 111
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 047992 620 GKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-----SSIWEALLTACRIHGNIDLAVLAIE 693 (868)
Q Consensus 620 a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-----~~~w~~ll~a~~~~~~~~~a~~~~~ 693 (868)
..+.++.+.+ =..-..+.|++.+|.+.+... .+.|+ +..|.....+....|+.+.|..-.+
T Consensus 245 ~~k~le~~k~-------------~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~ 311 (486)
T KOG0550|consen 245 MPKKLEVKKE-------------RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCN 311 (486)
T ss_pred hHHHHHHHHh-------------hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhh
Confidence 2222222222 134456889999999999887 44454 4445555555667899999999999
Q ss_pred HHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCCCcccEE
Q 047992 694 RLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRRNSFGQCWI 743 (868)
Q Consensus 694 ~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i 743 (868)
.+++++|.-..+|..-++.|...++|++|.+-.+..-+..-..++..+|+
T Consensus 312 ~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~ 361 (486)
T KOG0550|consen 312 EALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLR 361 (486)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 99999999999999999999999999999885443322222244444444
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.57 E-value=0.00049 Score=57.63 Aligned_cols=91 Identities=24% Similarity=0.342 Sum_probs=73.2
Q ss_pred HHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 047992 640 YSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICG 717 (868)
Q Consensus 640 y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 717 (868)
+..+...+.+.|++++|.+.+++. ...|+ ..+|..+...+...++++.|...+++++++.|.+...+..++.+|...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666777888999999888876 33444 3577777777888899999999999999999999889999999999999
Q ss_pred CChhHHHHHHHHH
Q 047992 718 KPEDALKVRKLER 730 (868)
Q Consensus 718 ~~~~a~~~~~~m~ 730 (868)
++++|.+..+...
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 9999988766543
No 153
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.0088 Score=57.68 Aligned_cols=166 Identities=13% Similarity=0.133 Sum_probs=121.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHH---HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 047992 538 MNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSL---ICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLA 614 (868)
Q Consensus 538 ~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 614 (868)
+.-+.-+..-+|+.+.|...++++..+-+-|...+ ..-+-..|++++|++.++..++.+ +.|.+++.--+...-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 34444555668889999988887664333333222 223456899999999999999864 33557887777777777
Q ss_pred CChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHH
Q 047992 615 GMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIH---GNIDLAV 689 (868)
Q Consensus 615 g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~---~~~~~a~ 689 (868)
|.--+|++-++...+. +..|.+.|.-+.++|...|.++.|.--++++ -..| ++.....|....... .|++.+.
T Consensus 134 GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 8888999988888874 4567778888999999999999999999988 3344 334555555555444 3899999
Q ss_pred HHHHHHhccCCCCchhH
Q 047992 690 LAIERLFDLEPGDVLIQ 706 (868)
Q Consensus 690 ~~~~~~~~l~p~~~~~~ 706 (868)
+.+++++++.|.+...+
T Consensus 212 kyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRAL 228 (289)
T ss_pred HHHHHHHHhChHhHHHH
Confidence 99999999999765544
No 154
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.014 Score=56.78 Aligned_cols=157 Identities=12% Similarity=0.081 Sum_probs=111.8
Q ss_pred HHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCe
Q 047992 350 IHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNV 429 (868)
Q Consensus 350 i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 429 (868)
+.+.+.......+......-...|...|++++|.+...... +..+.-.=+..+.+..+.+-|.+.+++|.+-. +.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQID---ED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hH
Confidence 34444444334444444455667889999999999988733 33333333556778888999999999999654 67
Q ss_pred eehhhHHHHHHh----cCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHH
Q 047992 430 ITWNVLISGYIQ----NGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILS 505 (868)
Q Consensus 430 ~t~~~li~~~~~----~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 505 (868)
.|.+.|..++.+ .+.+.+|.-+|++|.++. +|+..+.+-+..++...|++++|..++++..... .-++.|+.-
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~--~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~N 246 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT--PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc--CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHH
Confidence 788877777765 456899999999998764 7888899999999999999999999999987653 233445544
Q ss_pred HHHHHhchh
Q 047992 506 VLPACAYLV 514 (868)
Q Consensus 506 ll~a~~~~~ 514 (868)
++-.....|
T Consensus 247 liv~a~~~G 255 (299)
T KOG3081|consen 247 LIVLALHLG 255 (299)
T ss_pred HHHHHHHhC
Confidence 443333333
No 155
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.54 E-value=0.00017 Score=56.68 Aligned_cols=62 Identities=18% Similarity=0.231 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC-CChhHHHHHHHH
Q 047992 668 DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICG-KPEDALKVRKLE 729 (868)
Q Consensus 668 ~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g-~~~~a~~~~~~m 729 (868)
++.+|..+...+...|+++.|+..++++++++|+++.+|..+|.+|...| ++++|.+..+..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 46689999999999999999999999999999999999999999999999 799999876544
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.54 E-value=0.00093 Score=59.12 Aligned_cols=66 Identities=15% Similarity=0.133 Sum_probs=38.7
Q ss_pred HHHHHHhhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh
Q 047992 640 YSAMIDLYGRSGKLEEAMEFIEDM-PIEPD----SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLI 705 (868)
Q Consensus 640 y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~----~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 705 (868)
+..+..++.+.|++++|.+.+++. ...|+ ..+|..+..++...|+.+.|...++++++..|+++..
T Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 42 HYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 344555555666666666665554 22222 3355556666666777777777777777777766543
No 157
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.51 E-value=0.002 Score=72.09 Aligned_cols=137 Identities=19% Similarity=0.190 Sum_probs=73.2
Q ss_pred CCCCCceecHHHHHHHHhc--C---ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCChHHHHHHHHHhhhhcCCC
Q 047992 561 MSSKDIITWNSLICGYVLH--G---FWHAALDLFDQMKSFGLKPNRG-TFLSIILAHSLAGMVDLGKKVFCSITECYQII 634 (868)
Q Consensus 561 ~~~~d~~~~~~li~~~~~~--g---~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 634 (868)
..+.|...|...+.|.... + ...+|+++|++.++ ..||.. .+..+..++... ++..
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~----------------~~~~ 393 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVR----------------HSQQ 393 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHH----------------HhcC
Confidence 3456777788777775432 2 36789999999999 789863 333222211100 0111
Q ss_pred CChhHHHHHHHhhhhcCChHHHHHHHHhC---C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 047992 635 PMIEHYSAMIDLYGRSGKLEEAMEFIEDM---P-IEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLIL 710 (868)
Q Consensus 635 p~~~~y~~lvd~l~r~g~~~eA~~~i~~~---~-~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 710 (868)
|.. .++++.|.+..++. + ...++.++.++.-.....|+++.|...++++++++| +..+|++++
T Consensus 394 ~~~------------~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG 460 (517)
T PRK10153 394 PLD------------EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLG 460 (517)
T ss_pred Ccc------------HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHH
Confidence 110 01222233332221 1 222334555554444455666666666666666666 356666666
Q ss_pred HHHhhcCCChhHHHHHHH
Q 047992 711 QIYAICGKPEDALKVRKL 728 (868)
Q Consensus 711 ~~y~~~g~~~~a~~~~~~ 728 (868)
.+|...|+.++|....+.
T Consensus 461 ~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 461 KVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 666666666666665443
No 158
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.51 E-value=0.00012 Score=46.84 Aligned_cols=31 Identities=26% Similarity=0.549 Sum_probs=27.1
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHHhHHCCC
Q 047992 123 YTWSAMIGAYSRDQRWREVVELFFLMVQDGL 153 (868)
Q Consensus 123 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 153 (868)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5799999999999999999999999988774
No 159
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.48 E-value=0.0011 Score=58.53 Aligned_cols=95 Identities=15% Similarity=0.021 Sum_probs=78.3
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---chhHHHHH
Q 047992 639 HYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD----SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGD---VLIQRLIL 710 (868)
Q Consensus 639 ~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~----~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~---~~~~~~l~ 710 (868)
.+...+..+.+.|++++|.+.++++ ...|+ ...+..+..++...|+++.|...++++++..|++ +..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4556677788899999999998887 23343 3466678888899999999999999999999986 56789999
Q ss_pred HHHhhcCCChhHHHHHHHHHhcC
Q 047992 711 QIYAICGKPEDALKVRKLERENT 733 (868)
Q Consensus 711 ~~y~~~g~~~~a~~~~~~m~~~~ 733 (868)
.+|...|++++|.+..+.+.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 99999999999999888776553
No 160
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.43 E-value=0.00036 Score=53.97 Aligned_cols=55 Identities=22% Similarity=0.215 Sum_probs=36.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 676 LTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 676 l~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
...+...|+++.|+..++++++.+|+++.++..++.+|...|++++|....+...
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445566777777777777777777777777777777777777777776665554
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.41 E-value=0.00055 Score=73.39 Aligned_cols=108 Identities=18% Similarity=0.159 Sum_probs=89.1
Q ss_pred HHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 047992 607 IILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRIHGN 684 (868)
Q Consensus 607 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~ 684 (868)
-.......|++++|+.+|+...+.. .-+...|..+..+|.+.|++++|+..++++ .+.|+ ...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 3456678899999999999998732 224567888888999999999999999988 55564 5588888889999999
Q ss_pred HHHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 047992 685 IDLAVLAIERLFDLEPGDVLIQRLILQIYAIC 716 (868)
Q Consensus 685 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 716 (868)
++.|...++++++++|+++.....+..+....
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999888887665444
No 162
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.40 E-value=0.00034 Score=54.13 Aligned_cols=61 Identities=25% Similarity=0.393 Sum_probs=52.5
Q ss_pred HHHhhhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 047992 643 MIDLYGRSGKLEEAMEFIEDM-PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFDLEPGDV 703 (868)
Q Consensus 643 lvd~l~r~g~~~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 703 (868)
+...+.+.|++++|.+.+++. ...|+.. +|..+..++...|+++.|...++++++++|+|+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788999999999999998 5667655 999999999999999999999999999999875
No 163
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.39 E-value=0.0052 Score=56.59 Aligned_cols=115 Identities=18% Similarity=0.091 Sum_probs=64.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCCh--hHHHHHHHhhhhcCC
Q 047992 579 HGFWHAALDLFDQMKSFGLKPNR----GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMI--EHYSAMIDLYGRSGK 652 (868)
Q Consensus 579 ~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~y~~lvd~l~r~g~ 652 (868)
.|+...+.+.++++... .|+. .....+...+...|++++|...|+...... -.|.. .....+..++...|+
T Consensus 24 ~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCC
Confidence 55556666666666553 2222 122223344555666666666666665532 11211 123345666667777
Q ss_pred hHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047992 653 LEEAMEFIEDMPIE-PDSSIWEALLTACRIHGNIDLAVLAIERLF 696 (868)
Q Consensus 653 ~~eA~~~i~~~~~~-p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~ 696 (868)
+++|...++..+.+ ..+..+..+...+...|+.+.|+.+|++++
T Consensus 101 ~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 101 YDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 77777777665322 233456666667777777777777777653
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.37 E-value=0.0014 Score=62.45 Aligned_cols=81 Identities=23% Similarity=0.188 Sum_probs=63.2
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHhC-CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 047992 639 HYSAMIDLYGRSGKLEEAMEFIEDM-PIE---PD-SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIY 713 (868)
Q Consensus 639 ~y~~lvd~l~r~g~~~eA~~~i~~~-~~~---p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 713 (868)
.|..+...+.+.|++++|.+.+++. ... ++ ...|..+...+...|+++.|...+++++++.|+++..+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3555566666677777777777665 222 22 357888888899999999999999999999999999999999999
Q ss_pred hhcCCC
Q 047992 714 AICGKP 719 (868)
Q Consensus 714 ~~~g~~ 719 (868)
...|+.
T Consensus 117 ~~~g~~ 122 (172)
T PRK02603 117 HKRGEK 122 (172)
T ss_pred HHcCCh
Confidence 988873
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.36 E-value=0.0017 Score=69.63 Aligned_cols=103 Identities=17% Similarity=0.173 Sum_probs=82.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhh
Q 047992 572 LICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGR 649 (868)
Q Consensus 572 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r 649 (868)
-...+...|++++|+++|++.++ ..|+. ..+..+..++.+.|++++|+..++...+. .| +...|..+..+|.+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHH
Confidence 34556788999999999999998 66755 66777778899999999999999998873 44 45678888899999
Q ss_pred cCChHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 047992 650 SGKLEEAMEFIEDM-PIEPDSSIWEALLTAC 679 (868)
Q Consensus 650 ~g~~~eA~~~i~~~-~~~p~~~~w~~ll~a~ 679 (868)
.|++++|...+++. .+.|+......++..|
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999987 5667666555555555
No 166
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.36 E-value=0.46 Score=54.40 Aligned_cols=88 Identities=18% Similarity=0.259 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCCHH---HHHHHHhcCCC---CCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 047992 538 MNSLIDTYAKSGNIV---YSRTIFDGMSS---KDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAH 611 (868)
Q Consensus 538 ~~~Li~~y~k~g~~~---~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 611 (868)
-+.|+++|-+.++.. +|.-+++.... .|..+--.+|..|..-|-...|.++|+.|--..+.-|...+... .-.
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~-~~~ 517 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIF-RRA 517 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHH-HHH
Confidence 466778887777755 34444443332 23334455677777778888888888777655566665443322 223
Q ss_pred hccCChHHHHHHHHH
Q 047992 612 SLAGMVDLGKKVFCS 626 (868)
Q Consensus 612 ~~~g~~~~a~~~~~~ 626 (868)
...|+...+...++.
T Consensus 518 ~t~g~~~~~s~~~~~ 532 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNE 532 (932)
T ss_pred HhcccchhHHHHHHH
Confidence 344555555444443
No 167
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.34 E-value=0.0013 Score=62.50 Aligned_cols=90 Identities=17% Similarity=-0.034 Sum_probs=72.0
Q ss_pred hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHH
Q 047992 637 IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD----SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQ 711 (868)
Q Consensus 637 ~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~----~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 711 (868)
...|..++..+...|++++|+..+++. ...|+ ..+|..+...+...|+.+.|...++++++++|.+...+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 344556666777788888888888876 33333 3478889899999999999999999999999999999999999
Q ss_pred HHh-------hcCCChhHHHHH
Q 047992 712 IYA-------ICGKPEDALKVR 726 (868)
Q Consensus 712 ~y~-------~~g~~~~a~~~~ 726 (868)
+|. ..|++++|....
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHH
Confidence 999 778877665543
No 168
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.28 E-value=0.041 Score=59.77 Aligned_cols=216 Identities=17% Similarity=0.204 Sum_probs=121.4
Q ss_pred hhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHH
Q 047992 410 CGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFR 489 (868)
Q Consensus 410 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 489 (868)
+-+-+.-+++|++.|-.|+... +...++-.|.+.+|-++|.+- |.-..|+++|.
T Consensus 616 ~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~-----------------------G~enRAlEmyT 669 (1081)
T KOG1538|consen 616 YLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS-----------------------GHENRALEMYT 669 (1081)
T ss_pred HHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc-----------------------CchhhHHHHHH
Confidence 3344556777888887787653 445577788899998888755 44456666666
Q ss_pred HhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceec
Q 047992 490 KMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITW 569 (868)
Q Consensus 490 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~ 569 (868)
.|+- | -...-+...|+.+.-+.+...-.. ...++.--.+-..|+...|+.+.|..
T Consensus 670 DlRM---------F-D~aQE~~~~g~~~eKKmL~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~------------- 724 (1081)
T KOG1538|consen 670 DLRM---------F-DYAQEFLGSGDPKEKKMLIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIE------------- 724 (1081)
T ss_pred HHHH---------H-HHHHHHhhcCChHHHHHHHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhh-------------
Confidence 6541 0 011112222333222222211111 00111111234455666676666644
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhh
Q 047992 570 NSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGR 649 (868)
Q Consensus 570 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r 649 (868)
..+.+|-.+-++++-.++-. .+..+...+..-+.....+.-|-++|.+|-. ...+|++...
T Consensus 725 -----i~~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve 785 (1081)
T KOG1538|consen 725 -----ICGDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVE 785 (1081)
T ss_pred -----hhhcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheee
Confidence 33445555666666555433 2334444444444555666778888888865 4678999999
Q ss_pred cCChHHHHHHHHhCC-CCCCHH-HHHHHH----------HHHHhcCCHHHHHHHHHHH
Q 047992 650 SGKLEEAMEFIEDMP-IEPDSS-IWEALL----------TACRIHGNIDLAVLAIERL 695 (868)
Q Consensus 650 ~g~~~eA~~~i~~~~-~~p~~~-~w~~ll----------~a~~~~~~~~~a~~~~~~~ 695 (868)
.|+++||..+-++.| +.||.. -+...| .|+.+.|...+|.++.+++
T Consensus 786 ~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 786 TQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred cccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 999999999999996 455543 222222 2444556666666665555
No 169
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.21 E-value=0.0065 Score=55.50 Aligned_cols=104 Identities=19% Similarity=0.193 Sum_probs=75.4
Q ss_pred HhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC--
Q 047992 626 SITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM---PIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEP-- 700 (868)
Q Consensus 626 ~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~---~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p-- 700 (868)
...++..+.|++.+--.+...+.+.|+..||...+++. ++.-|..+.-.+..+-..-++.-.|....|++.|-.|
T Consensus 78 ea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~ 157 (251)
T COG4700 78 EATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF 157 (251)
T ss_pred HHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc
Confidence 34445566777777777777777888888888877776 5666777777777777777777778888888877777
Q ss_pred CCchhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 701 GDVLIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 701 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
..+....+++..|+..|++++|+.-.+..
T Consensus 158 r~pd~~Ll~aR~laa~g~~a~Aesafe~a 186 (251)
T COG4700 158 RSPDGHLLFARTLAAQGKYADAESAFEVA 186 (251)
T ss_pred CCCCchHHHHHHHHhcCCchhHHHHHHHH
Confidence 35666777777888888887777655544
No 170
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.21 E-value=0.00047 Score=53.93 Aligned_cols=63 Identities=27% Similarity=0.402 Sum_probs=33.5
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHH
Q 047992 649 RSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQ 711 (868)
Q Consensus 649 r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 711 (868)
..|++++|++.++++ ...| +..++..|..++...|+++.|+..+++++..+|+++..+.+++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 345555555555554 2223 33455555555555666666666666666666655555555543
No 171
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.19 E-value=0.055 Score=56.22 Aligned_cols=127 Identities=23% Similarity=0.236 Sum_probs=70.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc-CChHHHHHHHHHhhhhcCCCCC----hhHHHHHHHhh
Q 047992 573 ICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLA-GMVDLGKKVFCSITECYQIIPM----IEHYSAMIDLY 647 (868)
Q Consensus 573 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lvd~l 647 (868)
+..|...|++..|-+.+.++-+ .|... |++++|+++|+...+-|..... ...+.-+.+++
T Consensus 101 ~~~y~~~G~~~~aA~~~~~lA~---------------~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKELAE---------------IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHH---------------HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 4555556665555555544432 34444 5666666666665554432222 23455667788
Q ss_pred hhcCChHHHHHHHHhC---CCCC---CHHHHHHHHHH---HHhcCCHHHHHHHHHHHhccCCCC--chhHHHHHHHHh
Q 047992 648 GRSGKLEEAMEFIEDM---PIEP---DSSIWEALLTA---CRIHGNIDLAVLAIERLFDLEPGD--VLIQRLILQIYA 714 (868)
Q Consensus 648 ~r~g~~~eA~~~i~~~---~~~p---~~~~w~~ll~a---~~~~~~~~~a~~~~~~~~~l~p~~--~~~~~~l~~~y~ 714 (868)
.+.|++++|.+++++. ..+. ...+-..++.+ +...||...|.+.+++..+.+|.- +.=+.++.++..
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~ 243 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLE 243 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence 8889999998888876 1111 11222233332 345689999999999999999853 333556655543
No 172
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.16 E-value=0.0037 Score=67.04 Aligned_cols=120 Identities=22% Similarity=0.292 Sum_probs=88.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHH
Q 047992 222 DGVAWNSMISGYFQIGENDEAHRLFDKMCRE--EIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCM 299 (868)
Q Consensus 222 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 299 (868)
+.+....++.......+.+++..++.+.... ....-..|..++|+.|.+.|..++++++++.=...|+=||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3444555555555566677777777777654 22223345568888888888888888888888888888888888888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhch
Q 047992 300 ISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDL 341 (868)
Q Consensus 300 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 341 (868)
|+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888887777777777777777776554
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.12 E-value=0.0069 Score=57.44 Aligned_cols=63 Identities=16% Similarity=0.135 Sum_probs=36.4
Q ss_pred eecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhccCChHHHHHHHHHhhh
Q 047992 567 ITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN--RGTFLSIILAHSLAGMVDLGKKVFCSITE 629 (868)
Q Consensus 567 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 629 (868)
..|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|+.+++....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566666666667777777777777665322221 13455555556666666666666655544
No 174
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.11 E-value=0.0076 Score=62.32 Aligned_cols=142 Identities=13% Similarity=0.155 Sum_probs=88.7
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHh
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILA-HSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDL 646 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~ 646 (868)
.|..++...-+.+..+.|..+|.+.++.+ .-+...|...... +...++.+.|.++|+...+.++.. .+.+.+.+|.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~--~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD--PDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT---HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHH
Confidence 34555555555555666666666665421 1122333333222 233455566777777777765544 4447788888
Q ss_pred hhhcCChHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 047992 647 YGRSGKLEEAMEFIEDM--PIEPD---SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIY 713 (868)
Q Consensus 647 l~r~g~~~eA~~~i~~~--~~~p~---~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 713 (868)
+.+.|+.+.|..+|++. .+.++ ..+|...+.--..+|+++....+.+++.++-|++..... +++-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~-f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL-FSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH-HHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH-HHHHh
Confidence 88889999999998887 22222 349999999999999999999999999999888544333 34433
No 175
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.10 E-value=0.0039 Score=51.93 Aligned_cols=94 Identities=26% Similarity=0.392 Sum_probs=54.1
Q ss_pred cHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhh
Q 047992 569 WNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLY 647 (868)
Q Consensus 569 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l 647 (868)
|..+...+...|++++|+..|++..+ ..|+. ..+..+ ..++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~------------------------------------~~~~ 44 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNL------------------------------------AAAY 44 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHH------------------------------------HHHH
Confidence 45566666777777777777777766 33432 333333 3444
Q ss_pred hhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 047992 648 GRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEP 700 (868)
Q Consensus 648 ~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p 700 (868)
.+.|++++|.+.+++. ...| +..+|..+...+...|+.+.|...++++++..|
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 45 YKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 4445555555555443 1222 224566666666667777777777777777666
No 176
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.09 E-value=0.0012 Score=65.26 Aligned_cols=86 Identities=17% Similarity=0.183 Sum_probs=74.9
Q ss_pred HHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChh
Q 047992 644 IDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPED 721 (868)
Q Consensus 644 vd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 721 (868)
.+-+...+++++|.+.+.++ .+.| |++.+..-..|+.+.|.++.|.+.++.++.+||..+.+|..|+-.|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 34456788999999999987 5665 556677778889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 047992 722 ALKVRKLE 729 (868)
Q Consensus 722 a~~~~~~m 729 (868)
|.+-+++-
T Consensus 168 A~~aykKa 175 (304)
T KOG0553|consen 168 AIEAYKKA 175 (304)
T ss_pred HHHHHHhh
Confidence 99986643
No 177
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.09 E-value=0.0012 Score=52.48 Aligned_cols=54 Identities=19% Similarity=0.164 Sum_probs=41.9
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 677 TACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 677 ~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
..+...++++.|..+++++++++|+++..+..++.+|...|+|++|.+..+..-
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 456677888888888888888888888888888888888888888887766554
No 178
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0024 Score=63.74 Aligned_cols=108 Identities=12% Similarity=0.068 Sum_probs=87.2
Q ss_pred CCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHhccCCCCchhHHH
Q 047992 634 IPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIH---GNIDLAVLAIERLFDLEPGDVLIQRL 708 (868)
Q Consensus 634 ~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~---~~~~~a~~~~~~~~~l~p~~~~~~~~ 708 (868)
.-|.+-|.-|...|.+.|+.+.|..-+.+. .+.| ++.+|..+..+.... .....|..++++++.+||.|..+..+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 335677888888888888888888888877 4444 455777777776443 36789999999999999999999999
Q ss_pred HHHHHhhcCCChhHHHHHHHHHhcCCCCCCccc
Q 047992 709 ILQIYAICGKPEDALKVRKLERENTRRNSFGQC 741 (868)
Q Consensus 709 l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s 741 (868)
|+-.|...|++.+|...++.|.+..-...|..+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 999999999999999999999877655555443
No 179
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.00 E-value=0.015 Score=52.72 Aligned_cols=97 Identities=8% Similarity=0.051 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhh
Q 047992 537 VMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHS 612 (868)
Q Consensus 537 ~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~ 612 (868)
..-++.--+...|++++|.++|+.+. +.+..-|..+...+-..|++.+|+..|..... +.||. .++-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHH
Confidence 34455666678899999999999654 45777899999999999999999999999998 56765 67777777888
Q ss_pred ccCChHHHHHHHHHhhhhcCCCC
Q 047992 613 LAGMVDLGKKVFCSITECYQIIP 635 (868)
Q Consensus 613 ~~g~~~~a~~~~~~m~~~~~~~p 635 (868)
..|+.+.|++.|+.....-+-.|
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred HcCCHHHHHHHHHHHHHHhccCh
Confidence 99999999999998877544333
No 180
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.00 E-value=0.56 Score=48.50 Aligned_cols=213 Identities=15% Similarity=0.099 Sum_probs=141.8
Q ss_pred hchhchHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhcCC-----CCCce--ecHHHHHHHHh---c
Q 047992 511 AYLVASNKVKEIHGCVLRRSLES-SLPVMNSLIDTYAKSGNIVYSRTIFDGMS-----SKDII--TWNSLICGYVL---H 579 (868)
Q Consensus 511 ~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~~~-----~~d~~--~~~~li~~~~~---~ 579 (868)
-..|+.+.+++.-+..-. ..| -.-...++++..+..|+++.|.++.+.-. ++|+. .--.++.+-++ .
T Consensus 165 qr~GareaAr~yAe~Aa~--~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld 242 (531)
T COG3898 165 QRLGAREAARHYAERAAE--KAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD 242 (531)
T ss_pred HhcccHHHHHHHHHHHHh--hccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence 455666666666655544 333 34567788889999999999999998654 45543 22233333332 3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHH
Q 047992 580 GFWHAALDLFDQMKSFGLKPNRGTF-LSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAME 658 (868)
Q Consensus 580 g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~ 658 (868)
-+...|...-.+..+ +.||-+.- +....++...|++.+|-.+++.+-+ ..|.++.....++ .|.|+ .+.+
T Consensus 243 adp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~lY~~--ar~gd--ta~d 313 (531)
T COG3898 243 ADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALLYVR--ARSGD--TALD 313 (531)
T ss_pred CChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHHHHH--hcCCC--cHHH
Confidence 456677777777666 78887543 3345578899999999999998865 5677665544443 34443 3333
Q ss_pred HHHhC----CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc-CCChhHHHHHHHHHhc
Q 047992 659 FIEDM----PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAIC-GKPEDALKVRKLEREN 732 (868)
Q Consensus 659 ~i~~~----~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~~ 732 (868)
-+++. .++||.. .--++..+-..-|++..|...++.+...+|. .+.|.+|++|-... |+-. ++|..|- +
T Consensus 314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg---~vR~wlA-q 388 (531)
T COG3898 314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQG---KVRQWLA-Q 388 (531)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchH---HHHHHHH-H
Confidence 33332 3567655 5556667778899999999999999999996 57899999987665 6654 4566663 3
Q ss_pred CCC--CCCc
Q 047992 733 TRR--NSFG 739 (868)
Q Consensus 733 ~~~--k~~g 739 (868)
+++ .+|.
T Consensus 389 av~APrdPa 397 (531)
T COG3898 389 AVKAPRDPA 397 (531)
T ss_pred HhcCCCCCc
Confidence 443 4454
No 181
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.99 E-value=0.41 Score=52.95 Aligned_cols=203 Identities=14% Similarity=0.085 Sum_probs=114.0
Q ss_pred CCCcchHHHHHHHHHHcCChHHHHHHHhhcCCC-------------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCc
Q 047992 189 SCVRRVRNSVLAVYVKCGKLIWARRFFESMDEK-------------DGVAWNSMISGYFQIGENDEAHRLFDKMCREEIK 255 (868)
Q Consensus 189 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-------------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 255 (868)
.|.+..|..|.....+.-.++-|...|-+...- +...-.+=|++| -|++++|.+++-+|.++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 466667776666655556666666666544321 011112223333 367778887777776542
Q ss_pred cChhhHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHH
Q 047992 256 LGVVTFNILIRSYNQLGQCDVAMEMVKRMESL-GITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSA 334 (868)
Q Consensus 256 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 334 (868)
..|..+.+.|++-...++++.--.. .-+.-...|+.+...++....+++|.+.|..-.. ....
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~ 828 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQ 828 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhH
Confidence 3455666667766665555431110 0001134677777777777777777777655421 1123
Q ss_pred HHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHH
Q 047992 335 ISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAY 414 (868)
Q Consensus 335 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~ 414 (868)
+.++.+..+++.-+.+- ..++.+....-.+.+|+.+.|.-++|.+.|-+-..| .+.+..|...+++.+|.
T Consensus 829 ~ecly~le~f~~LE~la-----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p-----kaAv~tCv~LnQW~~av 898 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLA-----RTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLP-----KAAVHTCVELNQWGEAV 898 (1189)
T ss_pred HHHHHHHHhhhhHHHHH-----HhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCc-----HHHHHHHHHHHHHHHHH
Confidence 34444444444332222 223556667777888888888888888777665554 34456667777777777
Q ss_pred HHHHHhH
Q 047992 415 ELFIKMQ 421 (868)
Q Consensus 415 ~l~~~m~ 421 (868)
++-+...
T Consensus 899 elaq~~~ 905 (1189)
T KOG2041|consen 899 ELAQRFQ 905 (1189)
T ss_pred HHHHhcc
Confidence 7766554
No 182
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.97 E-value=0.0057 Score=51.27 Aligned_cols=77 Identities=14% Similarity=0.216 Sum_probs=48.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCC-ccChhhHHHHHHHHHhcCC--------hHHHHHHHHHHHhcCCCCCeeeHH
Q 047992 227 NSMISGYFQIGENDEAHRLFDKMCREEI-KLGVVTFNILIRSYNQLGQ--------CDVAMEMVKRMESLGITPDVFTWT 297 (868)
Q Consensus 227 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~~~~~li~~~~~~g~--------~~~A~~~~~~m~~~g~~p~~~~~~ 297 (868)
...|..+...+++.....+|..+++.|+ .|++.+|+.++.+.++..- +-..+.+++.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445556666888888889999988888 8888888888888776432 223334444444444444444444
Q ss_pred HHHHHH
Q 047992 298 CMISGF 303 (868)
Q Consensus 298 ~li~~~ 303 (868)
.++..+
T Consensus 109 ivl~~L 114 (120)
T PF08579_consen 109 IVLGSL 114 (120)
T ss_pred HHHHHH
Confidence 444333
No 183
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.95 E-value=0.0015 Score=51.17 Aligned_cols=64 Identities=25% Similarity=0.456 Sum_probs=53.8
Q ss_pred hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcC-CHHHHHHHHHHHhccCC
Q 047992 637 IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSS-IWEALLTACRIHG-NIDLAVLAIERLFDLEP 700 (868)
Q Consensus 637 ~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~~-~~~~a~~~~~~~~~l~p 700 (868)
...|..+...+.+.|++++|++.+++. ...|+.. +|..+..++...| +.+.|...++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 345777788888899999999998887 5556544 8888999999999 79999999999999998
No 184
>PRK15331 chaperone protein SicA; Provisional
Probab=96.93 E-value=0.0063 Score=55.36 Aligned_cols=87 Identities=18% Similarity=0.142 Sum_probs=74.3
Q ss_pred HhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhH
Q 047992 645 DLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDA 722 (868)
Q Consensus 645 d~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 722 (868)
.-+...|++++|+.+|+-. -..| |...|..|...|...|+++.|...+..+..++++|+.++...+..|...|+.++|
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHH
Confidence 3345689999999999876 2222 4457899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 047992 723 LKVRKLERE 731 (868)
Q Consensus 723 ~~~~~~m~~ 731 (868)
..-.....+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 998776543
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.92 E-value=0.011 Score=51.75 Aligned_cols=92 Identities=14% Similarity=0.087 Sum_probs=70.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhH-HHHHHHhh
Q 047992 571 SLICGYVLHGFWHAALDLFDQMKSFGLKPNR--GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEH-YSAMIDLY 647 (868)
Q Consensus 571 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-y~~lvd~l 647 (868)
.+..++-..|+.++|+.+|++....|..+.. ..+..+.+++.+.|++++|..+|+.....++-.+.... ..-+...+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3456778899999999999999998877653 57788888999999999999999998876544222221 22234577
Q ss_pred hhcCChHHHHHHHHh
Q 047992 648 GRSGKLEEAMEFIED 662 (868)
Q Consensus 648 ~r~g~~~eA~~~i~~ 662 (868)
...|+.+||.+.+-.
T Consensus 86 ~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 86 YNLGRPKEALEWLLE 100 (120)
T ss_pred HHCCCHHHHHHHHHH
Confidence 889999999888754
No 186
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.91 E-value=0.0083 Score=56.93 Aligned_cols=114 Identities=17% Similarity=0.197 Sum_probs=77.1
Q ss_pred HHHHhhc--CCCChhhHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 047992 212 RRFFESM--DEKDGVAWNSMISGYFQI-----GENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRM 284 (868)
Q Consensus 212 ~~~f~~~--~~~d~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 284 (868)
...|+.. ..+|..+|..++..|.+. |..+-....+..|.+-|+.-|..+|+.|++.+-+ |.+- -..+|+.+
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~ 111 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE 111 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH
Confidence 4456655 456788888888888754 6777778888899999999999999999988765 2211 11122221
Q ss_pred HhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhH
Q 047992 285 ESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKAL 344 (868)
Q Consensus 285 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 344 (868)
--. .-.+-+-|++++++|...|+.||..|+..++..+.+.+..
T Consensus 112 F~h-----------------yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 112 FMH-----------------YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred hcc-----------------CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 110 1123456777888888888888888888888887765543
No 187
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.89 E-value=0.00092 Score=52.24 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=46.1
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 680 RIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 680 ~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
...|+++.|...++++++.+|+|+.++..|+.+|...|++++|.++.+.+.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 357999999999999999999999999999999999999999999887543
No 188
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.89 E-value=0.0015 Score=45.70 Aligned_cols=42 Identities=33% Similarity=0.397 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHH
Q 047992 670 SIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQ 711 (868)
Q Consensus 670 ~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 711 (868)
.+|..|..++...|+++.|+++++++++.+|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 368889999999999999999999999999999999988874
No 189
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.89 E-value=0.092 Score=54.54 Aligned_cols=148 Identities=16% Similarity=0.174 Sum_probs=63.9
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhc-CChHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHhhc
Q 047992 541 LIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLH-GFWHAALDLFDQMKS----FGLKPN--RGTFLSIILAHSL 613 (868)
Q Consensus 541 Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~-g~~~~A~~l~~~m~~----~g~~p~--~~t~~~ll~a~~~ 613 (868)
.++.|.+.|+...|-+++.. +...|-.. |++++|++.|++..+ .| .|. ...+..+...+..
T Consensus 100 A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYAR 167 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHH
Confidence 34455555555555444333 23444444 556666665555533 12 111 1233444455556
Q ss_pred cCChHHHHHHHHHhhhhcCCCC----Ch-hHHHHHHHhhhhcCChHHHHHHHHhC-CCCC----C--HHHHHHHHHHHHh
Q 047992 614 AGMVDLGKKVFCSITECYQIIP----MI-EHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP----D--SSIWEALLTACRI 681 (868)
Q Consensus 614 ~g~~~~a~~~~~~m~~~~~~~p----~~-~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p----~--~~~w~~ll~a~~~ 681 (868)
.|++++|.++|+.....+--.| +. .+|...+=++...|+...|.+.+++. ...| . ......|+.||..
T Consensus 168 l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE 247 (282)
T ss_dssp TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh
Confidence 6666666666665544321111 11 12222233344456666666666654 1111 1 2255556666643
Q ss_pred c--CCHHHHHHHHHHHhccCC
Q 047992 682 H--GNIDLAVLAIERLFDLEP 700 (868)
Q Consensus 682 ~--~~~~~a~~~~~~~~~l~p 700 (868)
. ..++.+..-++++-.+||
T Consensus 248 ~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 248 GDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp T-CCCHHHHCHHHTTSS---H
T ss_pred CCHHHHHHHHHHHcccCccHH
Confidence 2 345555555555555554
No 190
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.87 E-value=0.0026 Score=52.19 Aligned_cols=80 Identities=15% Similarity=0.249 Sum_probs=43.5
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcCChHHH
Q 047992 579 HGFWHAALDLFDQMKSFGL-KPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRSGKLEEA 656 (868)
Q Consensus 579 ~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA 656 (868)
.|++++|+.+|+++.+... .|+...+..+..++.+.|+.++|..+++. . ...|. ......+..++...|+++||
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 5677777777777776322 11334444456666677777777777765 1 12222 12222335666666666666
Q ss_pred HHHHHh
Q 047992 657 MEFIED 662 (868)
Q Consensus 657 ~~~i~~ 662 (868)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666654
No 191
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.84 E-value=0.0059 Score=51.18 Aligned_cols=78 Identities=14% Similarity=0.206 Sum_probs=62.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCeeeHHHHHHHHHhcC--------ChhHHHHHHHHHHhCCccCCcccHH
Q 047992 262 NILIRSYNQLGQCDVAMEMVKRMESLGI-TPDVFTWTCMISGFAQNG--------RTSQALDLFKEMSFVGVMPNGVTIT 332 (868)
Q Consensus 262 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~l~~~m~~~g~~pd~~t~~ 332 (868)
...|..+...+++...-.+|+.+.+.|+ -|++.+|+.++.+.++.. +.-+.+.+|+.|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4455666666999999999999999999 889999999998888753 2446778888888888889888888
Q ss_pred HHHHHHh
Q 047992 333 SAISACT 339 (868)
Q Consensus 333 ~ll~a~~ 339 (868)
.++..+.
T Consensus 109 ivl~~Ll 115 (120)
T PF08579_consen 109 IVLGSLL 115 (120)
T ss_pred HHHHHHH
Confidence 8887654
No 192
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.80 E-value=0.02 Score=64.32 Aligned_cols=81 Identities=15% Similarity=0.151 Sum_probs=55.5
Q ss_pred hHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhc--------CCHHHHHHHHHHHhcc--CCCCchhHHHHHHHHhhcCCCh
Q 047992 653 LEEAMEFIEDM-PIEPDSS-IWEALLTACRIH--------GNIDLAVLAIERLFDL--EPGDVLIQRLILQIYAICGKPE 720 (868)
Q Consensus 653 ~~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~--------~~~~~a~~~~~~~~~l--~p~~~~~~~~l~~~y~~~g~~~ 720 (868)
++.|.++++++ ...||.. .|..+..++... .+++.+.+.++++..+ +|.++..|..++-++...|+++
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~ 437 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD 437 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence 55677777666 5566644 444433332211 2356677777777664 8888889999999999999999
Q ss_pred hHHHHHHHHHhcC
Q 047992 721 DALKVRKLERENT 733 (868)
Q Consensus 721 ~a~~~~~~m~~~~ 733 (868)
+|....+...+..
T Consensus 438 ~A~~~l~rAl~L~ 450 (517)
T PRK10153 438 EAYQAINKAIDLE 450 (517)
T ss_pred HHHHHHHHHHHcC
Confidence 9999877665554
No 193
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.68 E-value=0.0047 Score=65.57 Aligned_cols=100 Identities=12% Similarity=-0.066 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh---HHHHHHHHhhcCCChhHHHHHHHHHhcCCCCCCcccEEE
Q 047992 668 DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLI---QRLILQIYAICGKPEDALKVRKLERENTRRNSFGQCWIE 744 (868)
Q Consensus 668 ~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~ 744 (868)
+...|..+..++...|+++.|...++++++++|+++.+ |..++..|+..|+.++|....+...+.+ .|-.+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels---n~~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY---NLKFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---chhHHHHH
Confidence 45599999999999999999999999999999999855 9999999999999999999655544331 22233222
Q ss_pred EcCEEEEEEeCCCCCCchHHHHHHHHhCCC
Q 047992 745 VKNLVYTFVTGGWSESYSDLLYSWLQNVPE 774 (868)
Q Consensus 745 ~~~~~~~f~~~d~~hp~~~~i~~~l~~~g~ 774 (868)
-+..+-.| +..|..+++.+.+.+.|-
T Consensus 151 ~DpdL~pl----R~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 151 NDPDLAPF----RASPEFKELQEEARKGGE 176 (453)
T ss_pred hCcchhhh----cccHHHHHHHHHHHHhCC
Confidence 22222111 356778888887776664
No 194
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.68 E-value=0.0044 Score=49.14 Aligned_cols=66 Identities=26% Similarity=0.424 Sum_probs=54.8
Q ss_pred HhhhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 047992 645 DLYGRSGKLEEAMEFIEDM-PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLIL 710 (868)
Q Consensus 645 d~l~r~g~~~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 710 (868)
.+|.+.+++++|.+.++.+ ...|+.. .|......+...|+++.|...++++++.+|+++....+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 4677899999999999988 5556544 7778888889999999999999999999998877665543
No 195
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.67 E-value=0.53 Score=52.09 Aligned_cols=130 Identities=15% Similarity=0.228 Sum_probs=68.8
Q ss_pred HHHHHHcCChHHHHHHHhhcCCC-----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCC
Q 047992 199 LAVYVKCGKLIWARRFFESMDEK-----DGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQ 273 (868)
Q Consensus 199 i~~y~~~g~~~~A~~~f~~~~~~-----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 273 (868)
|.++.+.|++-...+++..-... -...|+.+...++....|++|.+.|..-.. -...+..+.+..+
T Consensus 767 ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecly~le~ 837 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECLYRLEL 837 (1189)
T ss_pred HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHHHHHHh
Confidence 44555555555555544432211 123566666666666666666665544321 1123334444444
Q ss_pred hHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHH
Q 047992 274 CDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIH 351 (868)
Q Consensus 274 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~ 351 (868)
+++-+.+-..+++ |....-.|...+.+.|..++|.+.|-+-. . | ...+..|..++++.+|.++-
T Consensus 838 f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~-p-----kaAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 838 FGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRS---L-P-----KAAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred hhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhcc---C-c-----HHHHHHHHHHHHHHHHHHHH
Confidence 4444444333333 56666777777888888888877765432 1 1 23556677777776665553
No 196
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.61 E-value=1.2 Score=46.77 Aligned_cols=111 Identities=15% Similarity=0.133 Sum_probs=88.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCC
Q 047992 365 VGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGN 444 (868)
Q Consensus 365 ~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 444 (868)
..+..|.-+...|+...|.++-....-|+-.-|-..+.+++..+++++-..+-.. +-++..|-..+..|.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3444566667789999999999998888888999999999999999877765432 2356889999999999999
Q ss_pred HHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhh
Q 047992 445 EDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQ 492 (868)
Q Consensus 445 ~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 492 (868)
..+|..+...+. +..-+..|.+.|++.+|.+.-.+..
T Consensus 253 ~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 253 KKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 999999888752 3567888999999999887765543
No 197
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=2 Score=48.46 Aligned_cols=105 Identities=16% Similarity=0.176 Sum_probs=73.7
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHH
Q 047992 542 IDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGK 621 (868)
Q Consensus 542 i~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 621 (868)
+.-+...|+...|.++-.+..-||-..|=--+.+++..+++++-.++-+.+. + .+-|.....+|.+.|..+||.
T Consensus 691 v~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk-----s-PIGy~PFVe~c~~~~n~~EA~ 764 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK-----S-PIGYLPFVEACLKQGNKDEAK 764 (829)
T ss_pred HHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC-----C-CCCchhHHHHHHhcccHHHHh
Confidence 3344566888888888888777777777777778888888877666554432 1 456667777888888888888
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHh
Q 047992 622 KVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIED 662 (868)
Q Consensus 622 ~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~ 662 (868)
+|+..... +.-.+++|.+.|.+.||.++--+
T Consensus 765 KYiprv~~----------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 765 KYIPRVGG----------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hhhhccCC----------hHHHHHHHHHhccHHHHHHHHHH
Confidence 88775433 22467778888888888776544
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.50 E-value=0.019 Score=50.18 Aligned_cols=83 Identities=19% Similarity=0.223 Sum_probs=64.6
Q ss_pred HHhhhhcCChHHHHHHHHhC---CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC---CchhHHHHHHHHhh
Q 047992 644 IDLYGRSGKLEEAMEFIEDM---PIE-PD-SSIWEALLTACRIHGNIDLAVLAIERLFDLEPG---DVLIQRLILQIYAI 715 (868)
Q Consensus 644 vd~l~r~g~~~eA~~~i~~~---~~~-p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~---~~~~~~~l~~~y~~ 715 (868)
..++-..|+.++|+.++++. ... ++ ...+-.+.++++..|+++.|..++++.++-.|+ +....+.++-.+..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 34455677888888888876 111 21 226667888899999999999999999998888 77888888999999
Q ss_pred cCCChhHHHHH
Q 047992 716 CGKPEDALKVR 726 (868)
Q Consensus 716 ~g~~~~a~~~~ 726 (868)
.|+++||.+..
T Consensus 88 ~gr~~eAl~~~ 98 (120)
T PF12688_consen 88 LGRPKEALEWL 98 (120)
T ss_pred CCCHHHHHHHH
Confidence 99999998853
No 199
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.42 E-value=0.011 Score=56.18 Aligned_cols=105 Identities=14% Similarity=0.286 Sum_probs=77.7
Q ss_pred ccChhhHHHHHHHHHh-----cCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcc
Q 047992 255 KLGVVTFNILIRSYNQ-----LGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGV 329 (868)
Q Consensus 255 ~p~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 329 (868)
..+..+|..+++.|.+ .|.++=....+..|.+.|+..|..+|+.|++.+=+ |.+- |. .
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~-n 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PR-N 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cc-c
Confidence 4566777777777764 47788888889999999999999999999988754 2211 11 1
Q ss_pred cHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCC
Q 047992 330 TITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEE 378 (868)
Q Consensus 330 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 378 (868)
.+-++... -..+-+-|.+++++|...|+.||..++..|++.+++.+.
T Consensus 107 ~fQ~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 107 FFQAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11112111 234567789999999999999999999999999987765
No 200
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.42 E-value=0.064 Score=57.79 Aligned_cols=124 Identities=9% Similarity=0.088 Sum_probs=88.0
Q ss_pred CCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCccc
Q 047992 253 EIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESL--GITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVT 330 (868)
Q Consensus 253 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 330 (868)
+.+.+......+++.+....+++++..++-+.... ....-..|..++|..|.+.|..++++++++.=...|+-||.+|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44556667777888888888888888888877664 2222334556888888888888888888887777888888888
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcC
Q 047992 331 ITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKC 376 (868)
Q Consensus 331 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 376 (868)
++.++..+.+.|++..|.++...|...+...+..++..-+..+.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888777777776555554444434333333
No 201
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.41 E-value=0.44 Score=52.25 Aligned_cols=71 Identities=18% Similarity=0.204 Sum_probs=41.4
Q ss_pred hHHHHHHHhhCCCChHHHHHH--HHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhc
Q 047992 159 LFPKILQACGNCGDFEAGKLM--HSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQI 236 (868)
Q Consensus 159 t~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~ 236 (868)
.|...=++|.+.++..--+.+ +..+.+.|-.|+... +...++-.|.+.+|.++|. ++
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk------------------~~ 658 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFK------------------RS 658 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHH------------------Hc
Confidence 344445556555554433333 334555665566543 3344566778888887775 45
Q ss_pred CChhHHHHHHHHHH
Q 047992 237 GENDEAHRLFDKMC 250 (868)
Q Consensus 237 g~~~~A~~l~~~m~ 250 (868)
|....|+++|..|+
T Consensus 659 G~enRAlEmyTDlR 672 (1081)
T KOG1538|consen 659 GHENRALEMYTDLR 672 (1081)
T ss_pred CchhhHHHHHHHHH
Confidence 66667777777665
No 202
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.39 E-value=0.016 Score=58.71 Aligned_cols=91 Identities=14% Similarity=0.113 Sum_probs=39.2
Q ss_pred hccCChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCH
Q 047992 612 SLAGMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM----PIEPD-SSIWEALLTACRIHGNI 685 (868)
Q Consensus 612 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~----~~~p~-~~~w~~ll~a~~~~~~~ 685 (868)
...|++++|...|+.+.+.|.-.+- ...+-.+..+|...|++++|...|+++ |..|. ...|-.+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 3345555555555555554433221 122334444444555555555444444 11111 11333333334444555
Q ss_pred HHHHHHHHHHhccCCCC
Q 047992 686 DLAVLAIERLFDLEPGD 702 (868)
Q Consensus 686 ~~a~~~~~~~~~l~p~~ 702 (868)
+.|...++++++..|++
T Consensus 234 ~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHHHHHHCcCC
Confidence 55555555555555543
No 203
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.34 E-value=0.13 Score=51.71 Aligned_cols=171 Identities=15% Similarity=0.091 Sum_probs=95.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCCce---e---cHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHh
Q 047992 540 SLIDTYAKSGNIVYSRTIFDGMSSKDII---T---WNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR--GTFLSIILAH 611 (868)
Q Consensus 540 ~Li~~y~k~g~~~~A~~~f~~~~~~d~~---~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~ 611 (868)
.....+.+.|++++|.+.|+.+....+. . .-.++.+|-+.|++++|+..|++..+ ..|++ +.+...+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCchHHHHHHHHH
Confidence 3444455667777777777766532221 1 12234555666777777777777766 34443 3444444333
Q ss_pred hc--cC---------------C---hHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHH
Q 047992 612 SL--AG---------------M---VDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSI 671 (868)
Q Consensus 612 ~~--~g---------------~---~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~ 671 (868)
++ .+ + ..+|...|+.+++.| -.+.-.++|...+..+. +...
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y----------------P~S~ya~~A~~rl~~l~---~~la 175 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY----------------PNSQYTTDATKRLVFLK---DRLA 175 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC----------------cCChhHHHHHHHHHHHH---HHHH
Confidence 32 00 1 122333333333332 22222333333333220 0000
Q ss_pred HH--HHHHHHHhcCCHHHHHHHHHHHhccCCCCc---hhHHHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 672 WE--ALLTACRIHGNIDLAVLAIERLFDLEPGDV---LIQRLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 672 w~--~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
-. ....-|.+.|++.-|..-++.+++--|+.+ .+...|.+.|...|..++|.++++.+..
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 00 122235677899999999999999888654 5667889999999999999998877643
No 204
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.33 E-value=0.41 Score=50.59 Aligned_cols=32 Identities=31% Similarity=0.442 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 047992 671 IWEALLTACRIHGNIDLAVLAIERLFDLEPGD 702 (868)
Q Consensus 671 ~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 702 (868)
...+++.++...||.+.|.+++++++.+.|..
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 45789999999999999999999999998764
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.30 E-value=0.071 Score=54.13 Aligned_cols=91 Identities=19% Similarity=0.078 Sum_probs=55.9
Q ss_pred HHHHHHhhhhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---chhHHHHHH
Q 047992 640 YSAMIDLYGRSGKLEEAMEFIEDM-PIEPDS----SIWEALLTACRIHGNIDLAVLAIERLFDLEPGD---VLIQRLILQ 711 (868)
Q Consensus 640 y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~----~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~---~~~~~~l~~ 711 (868)
|..-++++.+.|++++|...|+.. ...|+. .++-.|..++...|+++.|...++++++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444455555567777777666665 222322 245556666677777777777777777666654 344455577
Q ss_pred HHhhcCCChhHHHHHHHHH
Q 047992 712 IYAICGKPEDALKVRKLER 730 (868)
Q Consensus 712 ~y~~~g~~~~a~~~~~~m~ 730 (868)
+|...|++++|.++.+...
T Consensus 226 ~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 7777777777777665543
No 206
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.27 E-value=0.32 Score=48.98 Aligned_cols=167 Identities=13% Similarity=0.042 Sum_probs=104.1
Q ss_pred HHHhchhchHHHHHHHHHHHHhCCCCChhHH---HHHHHHHHhcCCHHHHHHHHhcCCCC----CceecHHHHHHHHh--
Q 047992 508 PACAYLVASNKVKEIHGCVLRRSLESSLPVM---NSLIDTYAKSGNIVYSRTIFDGMSSK----DIITWNSLICGYVL-- 578 (868)
Q Consensus 508 ~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~Li~~y~k~g~~~~A~~~f~~~~~~----d~~~~~~li~~~~~-- 578 (868)
..+...|+++.|.+.+..++..-.. +.... -.++..|.+.|++++|...|++.... .-+.|-....|.+.
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence 3445679999999999999884322 23332 45678899999999999999977532 22344444444432
Q ss_pred cC---------------C---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHH
Q 047992 579 HG---------------F---WHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHY 640 (868)
Q Consensus 579 ~g---------------~---~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y 640 (868)
.+ + ..+|++.|+++++ --||. .-.++|......+... -.+|-
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~--~yP~S-------------~ya~~A~~rl~~l~~~-----la~~e 178 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR--GYPNS-------------QYTTDATKRLVFLKDR-----LAKYE 178 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHHH--HCcCC-------------hhHHHHHHHHHHHHHH-----HHHHH
Confidence 11 1 2467777777777 45653 2345555544444331 11233
Q ss_pred HHHHHhhhhcCChHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047992 641 SAMIDLYGRSGKLEEAMEFIEDM----PIEPDS-SIWEALLTACRIHGNIDLAVLAIERL 695 (868)
Q Consensus 641 ~~lvd~l~r~g~~~eA~~~i~~~----~~~p~~-~~w~~ll~a~~~~~~~~~a~~~~~~~ 695 (868)
-.+...|.+.|.+.-|..-++.+ |..|.. .....+..++...|..++|......+
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 45567788888887776665555 444432 35666778888888888888776554
No 207
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.24 E-value=1.8 Score=44.88 Aligned_cols=215 Identities=15% Similarity=0.107 Sum_probs=136.0
Q ss_pred HhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCC-CCCCHH--hHHHHHHHHhc---h
Q 047992 440 IQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSC-FYPNCV--TILSVLPACAY---L 513 (868)
Q Consensus 440 ~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~---~ 513 (868)
.+.|..+.|..+-+..-... +.-...+.+.+...+..|+++.|+++.+.-.... +.++.. .-..+|.+-+. -
T Consensus 165 qr~GareaAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld 242 (531)
T COG3898 165 QRLGAREAARHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD 242 (531)
T ss_pred HhcccHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence 45677777777666654432 3344567777788888888888888877654322 344432 22233333221 1
Q ss_pred hchHHHHHHHHHHHHhCCCCChhH-HHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHH
Q 047992 514 VASNKVKEIHGCVLRRSLESSLPV-MNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQM 592 (868)
Q Consensus 514 ~~~~~~~~i~~~~~~~~~~~~~~~-~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 592 (868)
.+...++..-....| +.||..- ...-...|.+.|++.++-.+++.+=+.++..= +...|....-++.++.-+++.
T Consensus 243 adp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~lY~~ar~gdta~dRlkRa 318 (531)
T COG3898 243 ADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IALLYVRARSGDTALDRLKRA 318 (531)
T ss_pred CChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHHHHHHhcCCCcHHHHHHHH
Confidence 234455555555555 5665432 23345678899999999999998753322211 223444444445555555554
Q ss_pred HH-CCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhc-CChHHHHHHHHhC
Q 047992 593 KS-FGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRS-GKLEEAMEFIEDM 663 (868)
Q Consensus 593 ~~-~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~-g~~~eA~~~i~~~ 663 (868)
.. ..++||+ .+...+..+-...|.+..|+.--+... ...|....|..|.|.-... |+-.++...+-+.
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 33 2388887 677778888888999988887666554 4789999999999987654 8889999988876
No 208
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.18 E-value=1.5 Score=43.35 Aligned_cols=191 Identities=18% Similarity=0.178 Sum_probs=136.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC-----CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047992 535 LPVMNSLIDTYAKSGNIVYSRTIFDGMS-----SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIIL 609 (868)
Q Consensus 535 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~-----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 609 (868)
..........+...+.+..+...+.... ......+..+...+...+...++++.+.........+.. .......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL-AEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch-HHHHHHH
Confidence 4666777788888888888888877653 334455666667777788888888888888874333322 2222222
Q ss_pred -HhhccCChHHHHHHHHHhhhhcCCCC----ChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh
Q 047992 610 -AHSLAGMVDLGKKVFCSITECYQIIP----MIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD--SSIWEALLTACRI 681 (868)
Q Consensus 610 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~--~~~w~~ll~a~~~ 681 (868)
++...|..+++...|..... ..| ....+......+...|+.++|...+.+. ...|+ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 67888999999999888743 333 2333334444466778899999888887 34444 5678888888888
Q ss_pred cCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 682 HGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 682 ~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
.++.+.|...+.++++..|.....+..++.++...|.++++.......
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKA 262 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHH
Confidence 889999999999999999987777888888888777788888765544
No 209
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.10 E-value=0.095 Score=54.20 Aligned_cols=125 Identities=13% Similarity=0.134 Sum_probs=51.8
Q ss_pred hhhhHHHHHhcCChhHHHHHHHHhhcCCC-CCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 047992 468 WNSLIAGYQQLGQKNNALGVFRKMQSSCF-YPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYA 546 (868)
Q Consensus 468 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~ 546 (868)
|-.++...-+.+..+.|..+|.+....+. ..+.....+.+. +...++.+.|..|++..++. +..+...+...++++.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 44444555555555555555555543211 111111111111 11123334455555555443 3344444555555555
Q ss_pred hcCCHHHHHHHHhcCCCC------CceecHHHHHHHHhcCChHHHHHHHHHHHH
Q 047992 547 KSGNIVYSRTIFDGMSSK------DIITWNSLICGYVLHGFWHAALDLFDQMKS 594 (868)
Q Consensus 547 k~g~~~~A~~~f~~~~~~------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 594 (868)
+.|+.+.|+.+|++.... -...|...+.--.++|+.+.+.++.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555543321 112444444444445555555555544444
No 210
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.06 E-value=0.4 Score=44.25 Aligned_cols=128 Identities=15% Similarity=0.093 Sum_probs=78.8
Q ss_pred CCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhC----C--CCCCHH
Q 047992 598 KPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDM----P--IEPDSS 670 (868)
Q Consensus 598 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~----~--~~p~~~ 670 (868)
.|....-..+..+....|+..||...|.+... |+-. +....-.+.......++..+|...+++. | -.||..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 44444444555555555555555555554443 2221 2222333344444455666666655554 1 234543
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 671 IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 671 ~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
. .+...+...|..+.|+.+++.++.-.|+ +..-...+.+++++|+.+++..-...+-
T Consensus 164 L--l~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 L--LFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred H--HHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 2 3556677889999999999999999984 6777888999999999998877554443
No 211
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.06 E-value=3.2 Score=45.95 Aligned_cols=183 Identities=18% Similarity=0.136 Sum_probs=130.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMSSK---DIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILA 610 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 610 (868)
+...|...++.-.+.|+.+...-.|++..-| =...|--++.-....|+.+-|-.++....+--++-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4567888888889999999999999987643 2234555555555558888887777766664333333443333445
Q ss_pred hhccCChHHHHHHHHHhhhhcCCCCCh-hHHHHHHHhhhhcCChHHHH---HHHHhC-CCCCCHHHHHHHHHH-----HH
Q 047992 611 HSLAGMVDLGKKVFCSITECYQIIPMI-EHYSAMIDLYGRSGKLEEAM---EFIEDM-PIEPDSSIWEALLTA-----CR 680 (868)
Q Consensus 611 ~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lvd~l~r~g~~~eA~---~~i~~~-~~~p~~~~w~~ll~a-----~~ 680 (868)
+.+.|+.+.|..+++.+.+++ |+. +.-.--+....|.|.++.+. +++... +..-+..+...+.-- +.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 788999999999999999876 553 33334456778999999988 666654 444444443333322 34
Q ss_pred hcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCC
Q 047992 681 IHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKP 719 (868)
Q Consensus 681 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 719 (868)
+.++.+.|..+..++.+..|++-..|..+.++-...+.-
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 678999999999999999999999999999987777633
No 212
>PRK11906 transcriptional regulator; Provisional
Probab=95.95 E-value=0.36 Score=51.85 Aligned_cols=161 Identities=12% Similarity=0.134 Sum_probs=97.6
Q ss_pred CCCCc---eec--HHHHHHHHhcC-----ChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHhhc----------cCChHHH
Q 047992 562 SSKDI---ITW--NSLICGYVLHG-----FWHAALDLFDQMK-SFGLKPNRGTFLSIILAHSL----------AGMVDLG 620 (868)
Q Consensus 562 ~~~d~---~~~--~~li~~~~~~g-----~~~~A~~l~~~m~-~~g~~p~~~t~~~ll~a~~~----------~g~~~~a 620 (868)
++.+. ..| ..++.|...-- ..+.|+.+|.+.. .+.+.|+...-.+.+.-|-. .....+|
T Consensus 244 ~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a 323 (458)
T PRK11906 244 AKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKA 323 (458)
T ss_pred CCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 34455 567 66666655421 2467888999988 22378887544444443321 1223455
Q ss_pred HHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 047992 621 KKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFD 697 (868)
Q Consensus 621 ~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~ 697 (868)
.+.-+...+ +.| |......+.-+++-.|+++.|..+|++. ...||.. +|......+...|+.+.|.+.++++++
T Consensus 324 ~~~A~rAve---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 324 LELLDYVSD---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHh---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 555555444 222 3344555566666677788888888877 5667655 666666667778888888888888888
Q ss_pred cCCCCchhHHHHHHH--HhhcCCChhHHHHH
Q 047992 698 LEPGDVLIQRLILQI--YAICGKPEDALKVR 726 (868)
Q Consensus 698 l~p~~~~~~~~l~~~--y~~~g~~~~a~~~~ 726 (868)
++|...++-++--++ |... ..++|.+++
T Consensus 401 LsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 401 LEPRRRKAVVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred cCchhhHHHHHHHHHHHHcCC-chhhhHHHH
Confidence 888766655544443 4443 355565554
No 213
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.94 E-value=4.1 Score=46.18 Aligned_cols=328 Identities=13% Similarity=0.120 Sum_probs=174.2
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCC---hHHHHHHHHHHHHhCCCCCcchHHHHHHHH
Q 047992 126 SAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGD---FEAGKLMHSLVIKLGMSCVRRVRNSVLAVY 202 (868)
Q Consensus 126 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 202 (868)
..+|.-+...+.+..|+++-..|...-.+- ...|....+...+..+ -+.+..+-..+... . .+...+..+..-.
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~A 517 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRA 517 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHH
Confidence 345555666666666666655553211111 3344444443333321 22222222222111 1 2334455555556
Q ss_pred HHcCChHHHHHHHhhcCCC--------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCCh
Q 047992 203 VKCGKLIWARRFFESMDEK--------DGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQC 274 (868)
Q Consensus 203 ~~~g~~~~A~~~f~~~~~~--------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 274 (868)
..+|+.+-|+++.+.=+.. +..-+...+.-..+.|+.+-...++-.|... .+...+... ..+.
T Consensus 518 y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~------l~~~ 588 (829)
T KOG2280|consen 518 YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMT------LRNQ 588 (829)
T ss_pred HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHH------HHhc
Confidence 6677777777777654432 2223455566666677777776666666542 111111111 1233
Q ss_pred HHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHH-H-----HhCCccCCcccHHHHHHHHhchhhHHHHH
Q 047992 275 DVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKE-M-----SFVGVMPNGVTITSAISACTDLKALAMGM 348 (868)
Q Consensus 275 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~-m-----~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 348 (868)
..|..++....+.. |. .. +..+.+.++-.+++..|.. - ...|..|+ .....++|++........
T Consensus 589 p~a~~lY~~~~r~~---~~---~~-l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ 658 (829)
T KOG2280|consen 589 PLALSLYRQFMRHQ---DR---AT-LYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEA 658 (829)
T ss_pred hhhhHHHHHHHHhh---ch---hh-hhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHH
Confidence 44555555443321 00 01 1112222222222222211 0 01233333 333445555544422211
Q ss_pred HHHH----------HHH-HhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHH
Q 047992 349 EIHS----------LAV-KMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELF 417 (868)
Q Consensus 349 ~i~~----------~~~-~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 417 (868)
+..+ .+. +.|.....-+.+--+.-+..-|+...|.++-...+-+|-..|---+.+++..+++++-.++-
T Consensus 659 ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 659 KALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 1111 111 11222233344455556677889999999999888888888888889999999998877776
Q ss_pred HHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHh
Q 047992 418 IKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKM 491 (868)
Q Consensus 418 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 491 (868)
+.+. ++.-|.-.+..|.+.|+.++|.+++.+... . .-...+|.+.|++.+|.++--+-
T Consensus 739 kskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~------l----~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 739 KSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG------L----QEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred hccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC------h----HHHHHHHHHhccHHHHHHHHHHh
Confidence 6655 467788888999999999999999887732 1 15678888888888887765443
No 214
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=1.6 Score=45.80 Aligned_cols=165 Identities=11% Similarity=0.038 Sum_probs=104.9
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC-------CceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhc
Q 047992 542 IDTYAKSGNIVYSRTIFDGMSSK-------DIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSL 613 (868)
Q Consensus 542 i~~y~k~g~~~~A~~~f~~~~~~-------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~ 613 (868)
.+...|.|++..|.+.+.....- ++..|-.......+.|+.++|+.-.++... +.|.- -.+..-..++.-
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHH
Confidence 45667889999999998876532 333455556677789999999999888876 55443 223333345566
Q ss_pred cCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047992 614 AGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIE 693 (868)
Q Consensus 614 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~ 693 (868)
.+.+++|.+.|+...+. ..+.++-. .+.+|..-+++..- .-|-.+|+.-+...+.+.......
T Consensus 334 le~~e~AV~d~~~a~q~---~~s~e~r~----------~l~~A~~aLkkSkR----kd~ykilGi~~~as~~eikkayrk 396 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQL---EKDCEIRR----------TLREAQLALKKSKR----KDWYKILGISRNASDDEIKKAYRK 396 (486)
T ss_pred HHHHHHHHHHHHHHHhh---ccccchHH----------HHHHHHHHHHHhhh----hhHHHHhhhhhhcccchhhhHHHH
Confidence 78899999999887652 22222222 23445555554322 236667777777777777777777
Q ss_pred HHhccCCCCc-hh-------HHHHHHHHhhcCCChhHHHH
Q 047992 694 RLFDLEPGDV-LI-------QRLILQIYAICGKPEDALKV 725 (868)
Q Consensus 694 ~~~~l~p~~~-~~-------~~~l~~~y~~~g~~~~a~~~ 725 (868)
.++..-|+-. +. .--.++.|...++.++..+.
T Consensus 397 ~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ 436 (486)
T KOG0550|consen 397 LALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRF 436 (486)
T ss_pred HHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 7788777533 22 23456666666666666554
No 215
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.88 E-value=0.094 Score=48.29 Aligned_cols=108 Identities=20% Similarity=0.189 Sum_probs=71.1
Q ss_pred hhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047992 611 HSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVL 690 (868)
Q Consensus 611 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~ 690 (868)
....|+.+.+...+..+..-|.-.+=.... -...+......++++- ..+...++..+...|+++.|..
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~--------~~~W~~~~r~~l~~~~----~~~~~~l~~~~~~~~~~~~a~~ 83 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLD--------DEEWVEPERERLRELY----LDALERLAEALLEAGDYEEALR 83 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGT--------TSTTHHHHHHHHHHHH----HHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCC--------ccHHHHHHHHHHHHHH----HHHHHHHHHHHHhccCHHHHHH
Confidence 345567777777777666655322211100 0233344444444431 2255667778889999999999
Q ss_pred HHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 691 AIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 691 ~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
.+++++.++|-|...|..|..+|...|+..+|.++.+.++
T Consensus 84 ~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 84 LLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999765553
No 216
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.82 E-value=0.8 Score=44.78 Aligned_cols=186 Identities=12% Similarity=0.073 Sum_probs=116.8
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCce--------ecHHHHHHHHhcCChHHHHHHH
Q 047992 520 KEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSS--KDII--------TWNSLICGYVLHGFWHAALDLF 589 (868)
Q Consensus 520 ~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~d~~--------~~~~li~~~~~~g~~~~A~~l~ 589 (868)
+.+|..+.+. . ..-+++|...|.-..-+++-...|+.-.. ..+. .-+.++..+.-+|.+.-.+.++
T Consensus 125 R~lhAe~~~~--l--gnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~ 200 (366)
T KOG2796|consen 125 RILHAELQQY--L--GNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAY 200 (366)
T ss_pred HHHHHHHHHh--c--CCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHH
Confidence 4555555441 1 12245666666555555555555554332 2222 3355666666677888888999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcC----CCCChhHHHHHHHhhhhcCChHHHHHHHHhCCC
Q 047992 590 DQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQ----IIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPI 665 (868)
Q Consensus 590 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~ 665 (868)
++.++..-+-+.+....+.+.-.+.|+++.|..+|+...+..+ +.-..-..-.+..++.-+.++.+|...+.+.+.
T Consensus 201 ~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~ 280 (366)
T KOG2796|consen 201 HSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILR 280 (366)
T ss_pred HHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccc
Confidence 9999854444556677777888899999999999997765433 222232333344556667888899888888854
Q ss_pred C-CCHHHHHHHHHHH-HhcCCHHHHHHHHHHHhccCCCCchhHHHH
Q 047992 666 E-PDSSIWEALLTAC-RIHGNIDLAVLAIERLFDLEPGDVLIQRLI 709 (868)
Q Consensus 666 ~-p~~~~w~~ll~a~-~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l 709 (868)
. |...+...==..| .--|+...|.+..+.+++..|.....-.++
T Consensus 281 ~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~ 326 (366)
T KOG2796|consen 281 MDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVL 326 (366)
T ss_pred cCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHH
Confidence 3 3222322222223 346899999999999999999765444333
No 217
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.81 E-value=0.93 Score=44.36 Aligned_cols=137 Identities=9% Similarity=0.035 Sum_probs=85.3
Q ss_pred hhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHh-----CCCCChhHHHHHHH
Q 047992 469 NSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRR-----SLESSLPVMNSLID 543 (868)
Q Consensus 469 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~Li~ 543 (868)
+.++..+.-.|.+.-.+..+++.++..-+-+..-...+.+.-.+.|+.+.++..++.+.+. ++..+..+..+...
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 3445555556666666677777666444445555555666666677777777777766553 23333444444445
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047992 544 TYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSI 607 (868)
Q Consensus 544 ~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 607 (868)
.|.-..+...|.+.|+++. +.|++.-|.-.-...-.|+..+|++..+.|.+ ..|...+-.++
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~ 325 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESV 325 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhH
Confidence 5666677777777777655 34566666666666667888888888888877 55665554443
No 218
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.81 E-value=3 Score=43.72 Aligned_cols=110 Identities=12% Similarity=0.129 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCC
Q 047992 194 VRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQ 273 (868)
Q Consensus 194 ~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 273 (868)
+.+..|.-+...|+...|.++..+..-+|..-|...|.+++..++|++-.++... +-++.-|..++..+.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 4455566677788889999998888888888999999999999999877665322 2245778888888888888
Q ss_pred hHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHH
Q 047992 274 CDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEM 319 (868)
Q Consensus 274 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 319 (868)
..+|......+ .+..-+..|.+.|++.+|.+.-.+.
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 88888887763 2366778888888888887765443
No 219
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.67 E-value=0.084 Score=45.41 Aligned_cols=89 Identities=15% Similarity=0.171 Sum_probs=69.8
Q ss_pred hhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc----hhHHHHHHHHhhcCCC
Q 047992 646 LYGRSGKLEEAMEFIEDM-P-IEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDV----LIQRLILQIYAICGKP 719 (868)
Q Consensus 646 ~l~r~g~~~eA~~~i~~~-~-~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~----~~~~~l~~~y~~~g~~ 719 (868)
++..+|++++|++.|.+. . .+.++.+|+.-..++|.+|+.+.|..-.++++++.-+.. .+|+.-+-+|-..|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 466788888888888876 2 234567888899999999999999999999999865432 4578888999999999
Q ss_pred hhHHHHHHHHHhcCC
Q 047992 720 EDALKVRKLERENTR 734 (868)
Q Consensus 720 ~~a~~~~~~m~~~~~ 734 (868)
++|..-.....+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 988887776665553
No 220
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.44 E-value=0.099 Score=46.21 Aligned_cols=53 Identities=19% Similarity=0.405 Sum_probs=38.8
Q ss_pred cCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcC
Q 047992 631 YQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM----PIEPDSSIWEALLTACRIHG 683 (868)
Q Consensus 631 ~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~----~~~p~~~~w~~ll~a~~~~~ 683 (868)
.+..|+.....+++..|+..|++..|.++++.. |++-+..+|..|+.-|...-
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 355677778888888888888888888877655 55555778888887765543
No 221
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.19 E-value=7.8 Score=44.64 Aligned_cols=174 Identities=11% Similarity=0.055 Sum_probs=89.8
Q ss_pred HHHHHHhcCChhHHHHHHhhcCCCCceeHHHHH---HHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCCh
Q 047992 97 LLSVYAKCGCLDDAREVFEDMRERNLYTWSAMI---GAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDF 173 (868)
Q Consensus 97 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 173 (868)
-+.+..+...++.|..+-..-..+....-+.+. .-+-+.|++++|..-|-+-... +.| +.+++-+-.....
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~I 413 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRI 413 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHH
Confidence 344555555555555554443222111111111 1233567777777777665422 222 2345544444444
Q ss_pred HHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 047992 174 EAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDG-VAWNSMISGYFQIGENDEAHRLFDKMCRE 252 (868)
Q Consensus 174 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 252 (868)
..-...++.+.+.|+. +..--+.|++.|.+.++.+.-.++.+.-..-.. .-....+..+-+.+-.++|..+-.....
T Consensus 414 knLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~- 491 (933)
T KOG2114|consen 414 KNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK- 491 (933)
T ss_pred HHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-
Confidence 4444556666677763 333446688888888888777777766552211 1244555556666666666555444332
Q ss_pred CCccChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047992 253 EIKLGVVTFNILIRSYNQLGQCDVAMEMVKRME 285 (868)
Q Consensus 253 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 285 (868)
..... --.+-..+++++|++.+..++
T Consensus 492 ----he~vl---~ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 492 ----HEWVL---DILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred ----CHHHH---HHHHHHhcCHHHHHHHHhcCC
Confidence 11222 222334566777777776664
No 222
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.05 E-value=0.9 Score=44.46 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=35.6
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCch---hHHHHHHHHhhcCCChhHHH
Q 047992 678 ACRIHGNIDLAVLAIERLFDLEPGDVL---IQRLILQIYAICGKPEDALK 724 (868)
Q Consensus 678 a~~~~~~~~~a~~~~~~~~~l~p~~~~---~~~~l~~~y~~~g~~~~a~~ 724 (868)
-+...|++.-|..-++.+++.-|+... +...|...|...|.-+.+..
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 466789999999999999999997653 45678888999998884443
No 223
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.87 E-value=0.06 Score=34.85 Aligned_cols=33 Identities=27% Similarity=0.429 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 047992 670 SIWEALLTACRIHGNIDLAVLAIERLFDLEPGD 702 (868)
Q Consensus 670 ~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 702 (868)
.+|..+...+...|+++.|+..++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467888889999999999999999999999986
No 224
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.86 E-value=0.69 Score=42.09 Aligned_cols=68 Identities=15% Similarity=0.205 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhc-CChHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047992 600 NRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRS-GKLEEAMEFIEDMPIEPDSSIWEALLTA 678 (868)
Q Consensus 600 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~-g~~~eA~~~i~~~~~~p~~~~w~~ll~a 678 (868)
+......++..|...+.++++..++..+.. |...++.+... ++.+.|.+++.+. .++..|..++..
T Consensus 68 ~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~ 134 (140)
T smart00299 68 NHYDIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKA 134 (140)
T ss_pred ccCCHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHH
Confidence 344455567777777777777777766543 33445555444 7788888888762 356678777776
Q ss_pred HH
Q 047992 679 CR 680 (868)
Q Consensus 679 ~~ 680 (868)
|.
T Consensus 135 ~l 136 (140)
T smart00299 135 LL 136 (140)
T ss_pred HH
Confidence 64
No 225
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.86 E-value=0.044 Score=35.55 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 047992 670 SIWEALLTACRIHGNIDLAVLAIERLFDLEPGD 702 (868)
Q Consensus 670 ~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 702 (868)
.+|..+..++...|+++.|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 478889999999999999999999999999974
No 226
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.85 E-value=0.035 Score=44.61 Aligned_cols=27 Identities=15% Similarity=0.115 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 047992 671 IWEALLTACRIHGNIDLAVLAIERLFD 697 (868)
Q Consensus 671 ~w~~ll~a~~~~~~~~~a~~~~~~~~~ 697 (868)
++..+...+...|+++.|+..++++++
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444455555555555555555555544
No 227
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.81 E-value=6.8 Score=41.83 Aligned_cols=459 Identities=11% Similarity=0.107 Sum_probs=221.1
Q ss_pred HHhcCChhHHHHHHhhcCCC---Cce------eHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHH--hhC
Q 047992 101 YAKCGCLDDAREVFEDMRER---NLY------TWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQA--CGN 169 (868)
Q Consensus 101 ~~~~g~~~~A~~~f~~~~~~---~~~------~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~--~~~ 169 (868)
+-+.+++..|.++|.++-+. +.+ .-+.+|++|..++ .+.....+....+ ..| ...|..+..+ +-+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~--~~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQ--QFG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHH--hcC-CchHHHHHHHHHHHH
Confidence 35678888899888887532 212 2345666666543 2222223333322 123 3445555555 245
Q ss_pred CCChHHHHHHHHHHHHh--CCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 047992 170 CGDFEAGKLMHSLVIKL--GMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFD 247 (868)
Q Consensus 170 ~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~ 247 (868)
.+.++.|.+.+..-... +..+ ...+.=+. ++| .|-..=+..+.++...|++.++..+++
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~--~~Ld~ni~------------~l~-----~df~l~~i~a~sLIe~g~f~EgR~iLn 152 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTES--PWLDTNIQ------------QLF-----SDFFLDEIEAHSLIETGRFSEGRAILN 152 (549)
T ss_pred hhhHHHHHHHHHHHHhhhccccc--chhhhhHH------------HHh-----hHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 55666666665554433 1111 00000000 000 122233556677888888888888888
Q ss_pred HHHHcCC----ccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047992 248 KMCREEI----KLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVG 323 (868)
Q Consensus 248 ~m~~~g~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 323 (868)
+|...=. ..++.+|+.++-++++. .|-++.+.....=..-|.-||..|.+.=+.-++.. -..
T Consensus 153 ~i~~~llkrE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~------Y~k 218 (549)
T PF07079_consen 153 RIIERLLKRECEWNSDMYDRAVLMLSRS--------YFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRP------YEK 218 (549)
T ss_pred HHHHHHhhhhhcccHHHHHHHHHHHhHH--------HHHHHHHhcccccChHHHHHHHHHHHHHHHHhhch------HHh
Confidence 8775433 36888888877777653 22222221100011123344444433211111100 011
Q ss_pred ccCCcccHHHHHHHHhch--hhHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHcCCCHHHHHHHHHhcC--------CC
Q 047992 324 VMPNGVTITSAISACTDL--KALAMGMEIHSLAVKMGFTDDV-LVGNSLINMYSKCEELEAAERVFDMIK--------DK 392 (868)
Q Consensus 324 ~~pd~~t~~~ll~a~~~~--~~~~~a~~i~~~~~~~g~~~~~-~~~~~li~~y~~~g~~~~A~~vf~~~~--------~~ 392 (868)
+.|....+..++....-. ..+.--.+++..-.+.-+.|+- -+...|+.-..+ +.+++..+-+.+. ++
T Consensus 219 ~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~ 296 (549)
T PF07079_consen 219 FIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEE 296 (549)
T ss_pred hCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHH
Confidence 223333333333222111 1111122222222223333332 223333333333 3333333332222 22
Q ss_pred CeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeeh-------hhHHHHHHh----cCCHHHHHHHHHhcccCCCC
Q 047992 393 DVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITW-------NVLISGYIQ----NGNEDEAVDLFQRMGKNDKV 461 (868)
Q Consensus 393 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-------~~li~~~~~----~g~~~~A~~~f~~m~~~~~~ 461 (868)
=+.++..++....+.++..+|-+.+.-+.-.. |+...- ..+-+..+. .-+..+=+.+++.+...+.-
T Consensus 297 li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD 374 (549)
T PF07079_consen 297 LIDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID 374 (549)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc
Confidence 34456677777777787777777776665432 222110 112222221 11122223344433221100
Q ss_pred CCCeeehhh-hHHHHHhcCC-hhHHHHHHHHhhcCCCCCC-----HHhHHHHHHHHhc---hhchHHHHHHHHHHHHhCC
Q 047992 462 KRNTASWNS-LIAGYQQLGQ-KNNALGVFRKMQSSCFYPN-----CVTILSVLPACAY---LVASNKVKEIHGCVLRRSL 531 (868)
Q Consensus 462 ~~~~~~~~~-li~~~~~~g~-~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~---~~~~~~~~~i~~~~~~~~~ 531 (868)
..-.++|-. -..-+-+.|. -++|+++++.... +.|. ..++..+=.++.. ...+..-..+-..+...|+
T Consensus 375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl 452 (549)
T PF07079_consen 375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGL 452 (549)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 111112211 1222444444 6788888887764 3332 2233333334433 2455666677777888888
Q ss_pred CC----ChhHHHHHHHH--HHhcCCHHHHHHHHh--cCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 047992 532 ES----SLPVMNSLIDT--YAKSGNIVYSRTIFD--GMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGT 603 (868)
Q Consensus 532 ~~----~~~~~~~Li~~--y~k~g~~~~A~~~f~--~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 603 (868)
.| +..+.|-|.|+ ....|++..+.-.-. .-..|++.++..+.-....+.++++|.+.|.. ++||..+
T Consensus 453 ~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~ 527 (549)
T PF07079_consen 453 TPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERM 527 (549)
T ss_pred CcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhh
Confidence 76 34566777665 456788887754322 22356888888888888888999999999887 6788777
Q ss_pred HHHH
Q 047992 604 FLSI 607 (868)
Q Consensus 604 ~~~l 607 (868)
+.+-
T Consensus 528 ~dsk 531 (549)
T PF07079_consen 528 RDSK 531 (549)
T ss_pred HHHH
Confidence 7654
No 228
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.69 E-value=0.25 Score=45.41 Aligned_cols=69 Identities=20% Similarity=0.377 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHH-----hCCccCCccc
Q 047992 261 FNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMS-----FVGVMPNGVT 330 (868)
Q Consensus 261 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-----~~g~~pd~~t 330 (868)
...++..+...|++++|.++.+.+....+- |...|..+|.+|...|+..+|++.|+++. +.|+.|+..|
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344556666788888888888888777555 77788888888888888888888887764 2366666544
No 229
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.65 E-value=0.35 Score=48.72 Aligned_cols=109 Identities=17% Similarity=0.274 Sum_probs=69.6
Q ss_pred CCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHH
Q 047992 462 KRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSL 541 (868)
Q Consensus 462 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L 541 (868)
|.|...|-.|...|.+.|+.+.|..-|....+ +.|+ ++.....+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~----------------------------------n~~~~~g~ 196 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGD----------------------------------NPEILLGL 196 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCC----------------------------------CHHHHHHH
Confidence 67788888888888888888888888887764 2222 22223333
Q ss_pred HHH--HHhcC-CHHHHHHHHhcCCC---CCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047992 542 IDT--YAKSG-NIVYSRTIFDGMSS---KDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSII 608 (868)
Q Consensus 542 i~~--y~k~g-~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 608 (868)
... |..-| ...++..+|+++.. -|+.+..-+..++.+.|++.+|...|+.|.. .-|.......++
T Consensus 197 aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~--~lp~~~~rr~~i 267 (287)
T COG4235 197 AEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLD--LLPADDPRRSLI 267 (287)
T ss_pred HHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCCCchHHHH
Confidence 322 22222 23456666666542 3555666677788888888888888888888 445555555554
No 230
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.59 E-value=0.18 Score=49.60 Aligned_cols=114 Identities=11% Similarity=0.140 Sum_probs=82.4
Q ss_pred HHHHHHhhcC--CCChhhHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHH--HHHH
Q 047992 210 WARRFFESMD--EKDGVAWNSMISGYFQI-----GENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDV--AMEM 280 (868)
Q Consensus 210 ~A~~~f~~~~--~~d~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~--A~~~ 280 (868)
..++.|...+ ++|-.+|-+++..|... +.++-....++.|.+-|+..|..+|+.|++.+-+-.-... -.++
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3466777777 67888999999888754 5677777788899999999999999999998766433221 1112
Q ss_pred HHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhH
Q 047992 281 VKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKAL 344 (868)
Q Consensus 281 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 344 (868)
|-..+ .+-+-+++++++|...|+.||..+-..+++++.+.+..
T Consensus 132 F~HYP---------------------~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 132 FLHYP---------------------QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HhhCc---------------------hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 21111 12345788888888888889988888888888876654
No 231
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.50 E-value=0.18 Score=53.97 Aligned_cols=32 Identities=13% Similarity=0.223 Sum_probs=19.5
Q ss_pred CchhHHHHHHHHhhcCCChhHHHHHHHHHhcCC
Q 047992 702 DVLIQRLILQIYAICGKPEDALKVRKLERENTR 734 (868)
Q Consensus 702 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 734 (868)
|.++..+++.+|....+-+|+ ++.+..++..+
T Consensus 245 ~igav~~f~~L~~~e~k~~e~-q~~ri~Ree~L 276 (453)
T PLN03098 245 NIGGIVAFVSLFLWENKKEEE-QMSQITRDETL 276 (453)
T ss_pred HHHHHHHHHHHHHHHhcccHH-HHHHHHhhhhh
Confidence 346667788888766655554 44445666544
No 232
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.48 E-value=0.24 Score=54.38 Aligned_cols=131 Identities=21% Similarity=0.265 Sum_probs=82.7
Q ss_pred HhcCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHH
Q 047992 577 VLHGFWHAALDLFDQMK-SFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEE 655 (868)
Q Consensus 577 ~~~g~~~~A~~l~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~e 655 (868)
...|+.++++++...-. -..++ ..-...++.-+.+.|..+.|+++-..-.. --++....|+++.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLDI 336 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HHH
T ss_pred HHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHHH
Confidence 34667777665554111 11122 22345555666777888888776543322 2456678999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcC
Q 047992 656 AMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENT 733 (868)
Q Consensus 656 A~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 733 (868)
|.+..++. ++...|..|...+..+||++.|+.++++. ..+..|+-+|...|+-+.-.++-+.-..+|
T Consensus 337 A~~~a~~~---~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 337 ALEIAKEL---DDPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHCCCC---STHHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhc---CcHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99998875 47889999999999999999999999986 456678889999998766666655555444
No 233
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.33 E-value=0.029 Score=45.03 Aligned_cols=58 Identities=21% Similarity=0.186 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcc----CCC---CchhHHHHHHHHhhcCCChhHHHHHHH
Q 047992 671 IWEALLTACRIHGNIDLAVLAIERLFDL----EPG---DVLIQRLILQIYAICGKPEDALKVRKL 728 (868)
Q Consensus 671 ~w~~ll~a~~~~~~~~~a~~~~~~~~~l----~p~---~~~~~~~l~~~y~~~g~~~~a~~~~~~ 728 (868)
++..+...++..|+++.|+..+++++++ .|+ -...+..++++|...|++++|.+..+.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6677777788888888888888888754 222 245688899999999999999997654
No 234
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.19 E-value=14 Score=42.75 Aligned_cols=177 Identities=12% Similarity=0.073 Sum_probs=105.6
Q ss_pred HHHHHHHHcCChHHHHHHHhhcCCCChhhHHH----HHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcC
Q 047992 197 SVLAVYVKCGKLIWARRFFESMDEKDGVAWNS----MISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLG 272 (868)
Q Consensus 197 ~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~----li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 272 (868)
.-+++..+...++.|..+-..-.. |...-.. ...-+.+.|++++|..-|-+-... +.| ..+|.-|....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq 411 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHH
Confidence 345555666666666665544322 2222222 223345678888887777554421 111 23444555555
Q ss_pred ChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHH
Q 047992 273 QCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHS 352 (868)
Q Consensus 273 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~ 352 (868)
++.+-...++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+.-. .|.. .+-+..++..|.+.+-+++|..+-.
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHH
Confidence 566666677777777777 77788888999999988888777776553 3322 2235566777777777776665533
Q ss_pred HHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCC
Q 047992 353 LAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDK 392 (868)
Q Consensus 353 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~ 392 (868)
...+ +..+...+ +-..+++++|.+.+..++-+
T Consensus 488 k~~~-----he~vl~il---le~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 488 KFKK-----HEWVLDIL---LEDLHNYEEALRYISSLPIS 519 (933)
T ss_pred Hhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCCHH
Confidence 3221 33333333 34568899999999988754
No 235
>PRK11906 transcriptional regulator; Provisional
Probab=94.00 E-value=0.56 Score=50.41 Aligned_cols=113 Identities=12% Similarity=0.059 Sum_probs=84.9
Q ss_pred ChHHHHHHHHHhhhhcCCCCCh-hHHHHHHHhhh---------hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 047992 616 MVDLGKKVFCSITECYQIIPMI-EHYSAMIDLYG---------RSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHG 683 (868)
Q Consensus 616 ~~~~a~~~~~~m~~~~~~~p~~-~~y~~lvd~l~---------r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~ 683 (868)
..+.|..+|........+.|+. ..|.++...+. ......+|.++.++. ...| |+.....+.-+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 3567888899888656677773 34554443322 233456777777766 4444 5556666666777788
Q ss_pred CHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHH
Q 047992 684 NIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKL 728 (868)
Q Consensus 684 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 728 (868)
+++.|...++++++++|+.+.+|...+++..-+|+.++|.+..+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 899999999999999999999999999999999999999986553
No 236
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.92 E-value=10 Score=40.36 Aligned_cols=136 Identities=14% Similarity=0.199 Sum_probs=89.2
Q ss_pred eeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHH
Q 047992 429 VITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLP 508 (868)
Q Consensus 429 ~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 508 (868)
...|...++.-.+..-++.|..+|-+..+.+.+.+++..++++|.-+++ |++.-|..+|+--.. .
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~--~------------ 461 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL--K------------ 461 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH--h------------
Confidence 3455666666666777888888888887777677788888888776654 445556666553221 1
Q ss_pred HHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---C--ceecHHHHHHHHhcCChH
Q 047992 509 ACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSK---D--IITWNSLICGYVLHGFWH 583 (868)
Q Consensus 509 a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---d--~~~~~~li~~~~~~g~~~ 583 (868)
++.++..-+-.++.+...++-+.|+.+|+...++ + -..|..||.--.+-|+..
T Consensus 462 ----------------------f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN 519 (660)
T COG5107 462 ----------------------FPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLN 519 (660)
T ss_pred ----------------------CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchH
Confidence 2222223344555666777888888888754332 2 235777887777888888
Q ss_pred HHHHHHHHHHHCCCCCCHHH
Q 047992 584 AALDLFDQMKSFGLKPNRGT 603 (868)
Q Consensus 584 ~A~~l~~~m~~~g~~p~~~t 603 (868)
.|..+=++|.+ +-|...+
T Consensus 520 ~v~sLe~rf~e--~~pQen~ 537 (660)
T COG5107 520 NVYSLEERFRE--LVPQENL 537 (660)
T ss_pred HHHhHHHHHHH--HcCcHhH
Confidence 88888888877 5666544
No 237
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.76 E-value=0.61 Score=48.85 Aligned_cols=92 Identities=16% Similarity=0.153 Sum_probs=69.8
Q ss_pred HHHHHHhhhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 047992 640 YSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICG 717 (868)
Q Consensus 640 y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 717 (868)
+.-+.-++.+.+.+.+|++..++. ...|+.+ ..---..||...|+++.|+..++++++++|+|-.+..-|+.+-.+..
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIR 339 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 344555667778888888887776 4455443 55556778888999999999999999999999999988888877777
Q ss_pred CChhH-HHHHHHHHh
Q 047992 718 KPEDA-LKVRKLERE 731 (868)
Q Consensus 718 ~~~~a-~~~~~~m~~ 731 (868)
+.++. .++++.|-.
T Consensus 340 ~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 340 EYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHhh
Confidence 66665 557777744
No 238
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.75 E-value=7.5 Score=38.15 Aligned_cols=166 Identities=18% Similarity=0.169 Sum_probs=117.4
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CceecHHHHH-HHHhcCChHHHHHHHHHHHHCCCCC----CHHHH
Q 047992 533 SSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSK---DIITWNSLIC-GYVLHGFWHAALDLFDQMKSFGLKP----NRGTF 604 (868)
Q Consensus 533 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---d~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p----~~~t~ 604 (868)
.....+..+...+...++...+.+.+...... +...+..... .+...|+.++|...|++... ..| ....+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ 170 (291)
T COG0457 93 NLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEAL 170 (291)
T ss_pred chHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHH
Confidence 34455566666777777788888888766542 2223333334 67888999999999999865 444 22344
Q ss_pred HHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 047992 605 LSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRIH 682 (868)
Q Consensus 605 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~ 682 (868)
......+...+..+++...+.......... ....+..+...+...|.+++|...+... ...|+ ...+..+...+...
T Consensus 171 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (291)
T COG0457 171 LALGALLEALGRYEEALELLEKALKLNPDD-DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLEL 249 (291)
T ss_pred HHhhhHHHHhcCHHHHHHHHHHHHhhCccc-chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHc
Confidence 444444667889999999998887632211 3566778888888899999999999887 44454 45666666666666
Q ss_pred CCHHHHHHHHHHHhccCCC
Q 047992 683 GNIDLAVLAIERLFDLEPG 701 (868)
Q Consensus 683 ~~~~~a~~~~~~~~~l~p~ 701 (868)
++.+.+....++.++..|.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 250 GRYEEALEALEKALELDPD 268 (291)
T ss_pred CCHHHHHHHHHHHHHhCcc
Confidence 7899999999999999997
No 239
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=93.63 E-value=0.3 Score=50.63 Aligned_cols=129 Identities=13% Similarity=0.058 Sum_probs=92.2
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHH---hhhhcCCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC-----CCC---CCH
Q 047992 602 GTFLSIILAHSLAGMVDLGKKVFCS---ITECYQIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM-----PIE---PDS 669 (868)
Q Consensus 602 ~t~~~ll~a~~~~g~~~~a~~~~~~---m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~-----~~~---p~~ 669 (868)
..|-.+.+.|.-.|+++.|+...+. +.++||.... ...++-+...+.-.|+++.|.+.++.. .+. ..+
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3455555566667899999887763 4455666543 336777888888899999999988764 111 223
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccC------CCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 670 SIWEALLTACRIHGNIDLAVLAIERLFDLE------PGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 670 ~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~------p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
-..-+|.++|..-++++.|.....+=+.+- -....+|-.|+|.|...|.-+.|......-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 366788889998899999988887655432 2345778899999999999999988655443
No 240
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.38 E-value=13 Score=42.71 Aligned_cols=47 Identities=11% Similarity=0.202 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChh
Q 047992 365 VGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCG 411 (868)
Q Consensus 365 ~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~ 411 (868)
++..+|+-+.-.|++++|-...-.|...+..-|.--+..+...++..
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 44555666666666666666666666666666665555555555543
No 241
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.35 E-value=1.4 Score=43.16 Aligned_cols=140 Identities=17% Similarity=0.180 Sum_probs=77.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 047992 570 NSLICGYVLHGFWHAALDLFDQMKSFGLKPNR----GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMID 645 (868)
Q Consensus 570 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd 645 (868)
-.....+.+.|++.+|++.|+++... -|+. .....+..++...|+.++|...|+...+.|+-.|... +.-..-
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~ 85 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYML 85 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHH
Confidence 34455667788888888888888763 2321 3445566677778888888888888777776666543 111111
Q ss_pred hhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh-----------------HHH
Q 047992 646 LYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLI-----------------QRL 708 (868)
Q Consensus 646 ~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~-----------------~~~ 708 (868)
++ ..++. |...+...+..+....|...++.+++.-|+++-. -..
T Consensus 86 g~----------~~~~~---------~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ 146 (203)
T PF13525_consen 86 GL----------SYYKQ---------IPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELY 146 (203)
T ss_dssp HH----------HHHHH---------HHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH----------HHHHh---------CccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 00000 0000011222344566677777777777765433 234
Q ss_pred HHHHHhhcCCChhHHHHHHHHHh
Q 047992 709 ILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 709 l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
.+..|.+.|+|..|..-.+.+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHH
Confidence 68889999999999887666643
No 242
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.31 E-value=1.8 Score=43.59 Aligned_cols=117 Identities=14% Similarity=0.106 Sum_probs=76.3
Q ss_pred HhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHH---HHHHhcCCHH
Q 047992 610 AHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALL---TACRIHGNID 686 (868)
Q Consensus 610 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll---~a~~~~~~~~ 686 (868)
.....|+..++...|....... .-+.+.-..|..+|..+|+.++|..++..+|.+-...-|..|- .......+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3445667777777777665522 2224456667788888888888888888887665555554421 1122222222
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHH-HHHH
Q 047992 687 LAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKV-RKLE 729 (868)
Q Consensus 687 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~-~~~m 729 (868)
.. ..+++-+.-+|+|...-..|+..|-..|+.++|.+. ...|
T Consensus 221 ~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 221 EI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred CH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11 224455678999999999999999999999999884 4444
No 243
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.30 E-value=2.9 Score=37.94 Aligned_cols=123 Identities=13% Similarity=0.120 Sum_probs=60.5
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHH
Q 047992 163 ILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEA 242 (868)
Q Consensus 163 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A 242 (868)
++..+...+........+..+++.+ ..+....|.++..|++.. .......+.. ..+......+++.+.+.+.++++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~ 88 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEA 88 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHH
Confidence 3444443444444555555555444 245556666666666543 2333344432 22344445566666666666666
Q ss_pred HHHHHHHHHcCCccChhhHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHH
Q 047992 243 HRLFDKMCREEIKLGVVTFNILIRSYNQL-GQCDVAMEMVKRMESLGITPDVFTWTCMISGFA 304 (868)
Q Consensus 243 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 304 (868)
.-++.++.. +...+..+.+. ++.+.|.+.+.+-. +...|..++..+.
T Consensus 89 ~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~~------~~~lw~~~~~~~l 136 (140)
T smart00299 89 VELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQN------NPELWAEVLKALL 136 (140)
T ss_pred HHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhCC------CHHHHHHHHHHHH
Confidence 666655532 22223333333 55666666555421 4445555555443
No 244
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.17 E-value=0.32 Score=42.97 Aligned_cols=94 Identities=16% Similarity=0.198 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC
Q 047992 536 PVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAG 615 (868)
Q Consensus 536 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 615 (868)
.++.+++-++++.|+++....+.+..=.-|+ .+-...+. --......|+..+..+++.++...|
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~-------~~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n~ 66 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDV-------NGKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYNG 66 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCC-------CCccccCc---------cCCCCCCCCCHHHHHHHHHHHHhcc
Confidence 3455666667777777776666654322111 11111111 1123447899999999999999999
Q ss_pred ChHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 047992 616 MVDLGKKVFCSITECYQIIPMIEHYSAMID 645 (868)
Q Consensus 616 ~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd 645 (868)
++..|.++.+...+.|+++-....|..|..
T Consensus 67 ~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 67 DIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred cHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999999999999999998777777776664
No 245
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=93.09 E-value=4 Score=42.71 Aligned_cols=125 Identities=12% Similarity=0.074 Sum_probs=69.2
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHH
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKS----FGLKP-NRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSA 642 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~ 642 (868)
.+..+..+++-.|+++.|++.|+.-.. .|-+. ......++.++|.-...+++|+.|+..-..
T Consensus 237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLa------------- 303 (639)
T KOG1130|consen 237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLA------------- 303 (639)
T ss_pred hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-------------
Confidence 345566677777777777777766432 22221 224555666666666677777777764322
Q ss_pred HHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc-----CCC-CchhHHHHHHHHhhc
Q 047992 643 MIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDL-----EPG-DVLIQRLILQIYAIC 716 (868)
Q Consensus 643 lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l-----~p~-~~~~~~~l~~~y~~~ 716 (868)
-|.++=+.. -..-.+-+|..++-..|+.+.|...+++.+++ ||. ...+-+.|++.-...
T Consensus 304 ------------IAqeL~Dri---Ge~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~l 368 (639)
T KOG1130|consen 304 ------------IAQELEDRI---GELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILEL 368 (639)
T ss_pred ------------HHHHHHHhh---hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHh
Confidence 111111111 01223446777777777777777777766653 222 334556677766666
Q ss_pred CCCh
Q 047992 717 GKPE 720 (868)
Q Consensus 717 g~~~ 720 (868)
|+-+
T Consensus 369 G~~d 372 (639)
T KOG1130|consen 369 GQED 372 (639)
T ss_pred CCCc
Confidence 6544
No 246
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.08 E-value=10 Score=39.11 Aligned_cols=66 Identities=14% Similarity=-0.045 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC-C--CceecHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCC
Q 047992 535 LPVMNSLIDTYAKSGNIVYSRTIFDGMSS-K--DIITWNSLICGYV--LHGFWHAALDLFDQMKSFGLKPN 600 (868)
Q Consensus 535 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-~--d~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~p~ 600 (868)
+.++-.-++...+.++.+.+.+++.+|.. . ....+..++..+- .......|...+.+++..-+.|.
T Consensus 121 ~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 121 PEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 33333334444446666666666665542 1 2234444444441 11223455555555554434443
No 247
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.06 E-value=3.5 Score=44.66 Aligned_cols=101 Identities=16% Similarity=0.170 Sum_probs=72.3
Q ss_pred HHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCC--CCCHH--HHHHHHHHHH
Q 047992 605 LSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPI--EPDSS--IWEALLTACR 680 (868)
Q Consensus 605 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~--~p~~~--~w~~ll~a~~ 680 (868)
..+..++.+.|..+||.+.|+.|.+++...-.......++..|...+.+.|+..++.+-.. .|... .|.+.|-..|
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 3455566788999999999999988765444444566788999999999999999999741 34444 4555554455
Q ss_pred hcCCH---------------HHHHHHHHHHhccCCCCchh
Q 047992 681 IHGNI---------------DLAVLAIERLFDLEPGDVLI 705 (868)
Q Consensus 681 ~~~~~---------------~~a~~~~~~~~~l~p~~~~~ 705 (868)
.-+|. ..|.++..++++.+|.-+.+
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 44441 23568899999999976544
No 248
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.97 E-value=4.6 Score=35.30 Aligned_cols=140 Identities=18% Similarity=0.136 Sum_probs=77.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHH
Q 047992 577 VLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEA 656 (868)
Q Consensus 577 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA 656 (868)
.-.|..++..++..+..... +..-++-++.--..+-+-+--.+.++++-+-+.+.|-.. .-.+|..+.+.|...|
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~N-lKrVi~C~~~~n~~se- 87 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGN-LKRVIECYAKRNKLSE- 87 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT---H-
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcc-hHHHHHHHHHhcchHH-
Confidence 34677777777777776521 122222222222222223334455555555444444221 2234444444444433
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcCCC
Q 047992 657 MEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRR 735 (868)
Q Consensus 657 ~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 735 (868)
...-.|++....|.-|.-.+++..+++-+..+|...+-+++.|.+.|.-.++.++++..=++|++
T Consensus 88 --------------~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 --------------YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred --------------HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 23345677788899999999999999877778899999999999999999999999888888875
No 249
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.87 E-value=11 Score=37.46 Aligned_cols=56 Identities=18% Similarity=0.151 Sum_probs=45.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCch---hHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 677 TACRIHGNIDLAVLAIERLFDLEPGDVL---IQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 677 ~a~~~~~~~~~a~~~~~~~~~l~p~~~~---~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
.-|...|...-|..-++.+++--|+-+. ++..|.+.|...|.-++|.+..+.+...
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 3466789999999999999998776554 4566778899999999999999988754
No 250
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.61 E-value=0.79 Score=41.01 Aligned_cols=70 Identities=21% Similarity=0.196 Sum_probs=49.1
Q ss_pred hhhcCChHHHHHHHHhC----CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCch---hHHHHHHHHhhc
Q 047992 647 YGRSGKLEEAMEFIEDM----PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVL---IQRLILQIYAIC 716 (868)
Q Consensus 647 l~r~g~~~eA~~~i~~~----~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~---~~~~l~~~y~~~ 716 (868)
..+.|++++|.+.++.. |..|-.. +--.|+.++...++++.|...+++.+++.|.++. ++...+-.+...
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 34578888888887776 4444322 4456888899999999999999999999998763 333444444443
No 251
>PRK15331 chaperone protein SicA; Provisional
Probab=92.28 E-value=2.7 Score=38.62 Aligned_cols=51 Identities=12% Similarity=0.006 Sum_probs=27.6
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHH
Q 047992 269 NQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMS 320 (868)
Q Consensus 269 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 320 (868)
...|++++|..+|.-+.-.++. |..-|..|..++-..+++++|+..|....
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~ 98 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAF 98 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666665554333 34445555555555555555555555443
No 252
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.23 E-value=17 Score=43.74 Aligned_cols=152 Identities=15% Similarity=0.135 Sum_probs=79.3
Q ss_pred cCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH----HHhhccCChHHHHHH
Q 047992 548 SGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSII----LAHSLAGMVDLGKKV 623 (868)
Q Consensus 548 ~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll----~a~~~~g~~~~a~~~ 623 (868)
.|++++|..-+.++. ...|+-.+.---+||.+.+|+.++ +|+..++.-+. .-|...+..++|--.
T Consensus 893 L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~ 961 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALM 961 (1265)
T ss_pred HHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 356677766666554 334555555556788888887764 45554444433 334455555665555
Q ss_pred HHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 047992 624 FCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSI--WEALLTACRIHGNIDLAVLAIERLFDLEPG 701 (868)
Q Consensus 624 ~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~--w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 701 (868)
|+..-+ ..--+.+|-.+|++.+|..+..++....|... -..|.+-|...+..-.|-++.+..+. +|.
T Consensus 962 Ye~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s-d~~ 1030 (1265)
T KOG1920|consen 962 YERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS-DPE 1030 (1265)
T ss_pred HHHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc-CHH
Confidence 554322 11112344456667777776666644444432 24555566655554444443333222 111
Q ss_pred CchhHHHHHHHHhhcCCChhHHHHHH
Q 047992 702 DVLIQRLILQIYAICGKPEDALKVRK 727 (868)
Q Consensus 702 ~~~~~~~l~~~y~~~g~~~~a~~~~~ 727 (868)
--.-+|.++..|++|.++-.
T Consensus 1031 ------~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1031 ------EAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred ------HHHHHHhhHhHHHHHHHHHH
Confidence 12234556667777777644
No 253
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.08 E-value=2.8 Score=37.59 Aligned_cols=113 Identities=12% Similarity=0.075 Sum_probs=57.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhc
Q 047992 574 CGYVLHGFWHAALDLFDQMKSFGLKPN---RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRS 650 (868)
Q Consensus 574 ~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~ 650 (868)
....+.|++++|++.|+.+... .... ...-+.++.++...|++++|...++..++-+.-.|++. |.-....|..-
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd-Ya~Y~~gL~~~ 95 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD-YAYYMRGLSYY 95 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc-HHHHHHHHHHH
Confidence 3344566666666666666553 1111 13344555566666666666666666666555555432 33222222211
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 047992 651 GKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDV 703 (868)
Q Consensus 651 g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 703 (868)
+.-...+..++ +.=+-.+....|...+++++..-|++.
T Consensus 96 ---~~~~~~~~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 96 ---EQDEGSLQSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred ---HHhhhHHhhhc------------ccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 11111122211 111222346788888899999999764
No 254
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.07 E-value=3.8 Score=39.13 Aligned_cols=179 Identities=17% Similarity=0.113 Sum_probs=104.4
Q ss_pred HHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHH
Q 047992 545 YAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLG 620 (868)
Q Consensus 545 y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 620 (868)
|-..|-+.-|+--|.+.. ++-+..+|-+.--+...|+++.|.+.|+...+ +.|.. .++..-.-++...|+..-|
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhh
Confidence 444555666666665432 33345677777777788888888888888877 55643 5555555566677888777
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 047992 621 KKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEP 700 (868)
Q Consensus 621 ~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p 700 (868)
.+-|...-+.-+-.|-...|- -+-.+.-+..+|..-+.+=-..-|..-|+..+-.+..-+=-++ .+++++.+-..
T Consensus 153 q~d~~~fYQ~D~~DPfR~LWL---Yl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e--~l~~~~~a~a~ 227 (297)
T COG4785 153 QDDLLAFYQDDPNDPFRSLWL---YLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEE--TLMERLKADAT 227 (297)
T ss_pred HHHHHHHHhcCCCChHHHHHH---HHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHH--HHHHHHHhhcc
Confidence 776655443323333222222 2222344556665544433234566678777665543221111 11222222222
Q ss_pred CC-------chhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 701 GD-------VLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 701 ~~-------~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
++ ..+|..|+.-|...|..++|..+.|...
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 22 4678999999999999999999998664
No 255
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.00 E-value=7.6 Score=39.28 Aligned_cols=153 Identities=16% Similarity=0.168 Sum_probs=105.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCC
Q 047992 574 CGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGK 652 (868)
Q Consensus 574 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~ 652 (868)
......|+..+|..+|+...+ ..|+. ..-..+..++...|++++|..++..+-.+..-. .......-++++.++..
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-AAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh-HHHHHHHHHHHHHHHhc
Confidence 456678899999999999888 44543 455667778889999999999998764421111 11112345678888888
Q ss_pred hHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC--CCCchhHHHHHHHHhhcCCChh-HHHHHHH
Q 047992 653 LEEAMEFIEDMPIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLE--PGDVLIQRLILQIYAICGKPED-ALKVRKL 728 (868)
Q Consensus 653 ~~eA~~~i~~~~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~--p~~~~~~~~l~~~y~~~g~~~~-a~~~~~~ 728 (868)
..+..++..+..-.| |...--.|...+...|+.|.|...+-.++..+ -+|..+--.|..++..-|.-+. +.+.|+.
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRk 298 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRK 298 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 888888887775566 44455667777788899988877766666544 3566777777788877775544 4445665
Q ss_pred H
Q 047992 729 E 729 (868)
Q Consensus 729 m 729 (868)
|
T Consensus 299 L 299 (304)
T COG3118 299 L 299 (304)
T ss_pred H
Confidence 5
No 256
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.84 E-value=11 Score=35.13 Aligned_cols=131 Identities=13% Similarity=0.170 Sum_probs=70.2
Q ss_pred HHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhch--hhHHHHHHHHHHHHH
Q 047992 279 EMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDL--KALAMGMEIHSLAVK 356 (868)
Q Consensus 279 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~--~~~~~a~~i~~~~~~ 356 (868)
+.++.+.+.++.|+...|..+|..+.+.|++.. +.++.+.++-||.......+-..... .-...|.+++.++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~ 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT 90 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh
Confidence 344555566777777777777888887777544 34444567777776665544333221 112223333322211
Q ss_pred hCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhH
Q 047992 357 MGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQ 421 (868)
Q Consensus 357 ~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 421 (868)
.+..+++.+...|++-+|.+..+.....+......++.+-.+.++...-..+|+-..
T Consensus 91 --------~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 91 --------AYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred --------hHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 234455566667777777776666544444444555555555555444444444333
No 257
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.77 E-value=1.3 Score=44.09 Aligned_cols=86 Identities=16% Similarity=0.192 Sum_probs=40.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCCh-hHHHHHHHhhhhc
Q 047992 576 YVLHGFWHAALDLFDQMKSFGLKPNR----GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMI-EHYSAMIDLYGRS 650 (868)
Q Consensus 576 ~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lvd~l~r~ 650 (868)
+.+.|++.+|...|...++. -|+. ..+.-|..++...|+.++|..+|..+.++|+-.|.. +.+--+...+++.
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l 228 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL 228 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh
Confidence 33455566666666665552 2221 122223444555555555555555555555544443 4444444444444
Q ss_pred CChHHHHHHHHhC
Q 047992 651 GKLEEAMEFIEDM 663 (868)
Q Consensus 651 g~~~eA~~~i~~~ 663 (868)
|+.++|...+++.
T Consensus 229 ~~~d~A~atl~qv 241 (262)
T COG1729 229 GNTDEACATLQQV 241 (262)
T ss_pred cCHHHHHHHHHHH
Confidence 4444444444433
No 258
>PRK12798 chemotaxis protein; Reviewed
Probab=91.54 E-value=22 Score=38.04 Aligned_cols=166 Identities=19% Similarity=0.251 Sum_probs=114.9
Q ss_pred cCCHHHHHHHHhcCCCC----CceecHHHHHHHHh-cCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhhccCChH
Q 047992 548 SGNIVYSRTIFDGMSSK----DIITWNSLICGYVL-HGFWHAALDLFDQMKSFGLKPNR----GTFLSIILAHSLAGMVD 618 (868)
Q Consensus 548 ~g~~~~A~~~f~~~~~~----d~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~ 618 (868)
.|+-++|.+.+..+... .+..+-+|+.+-.. ..+..+|+++|++..- .-|-- ....--+..+...|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 69999999999988743 45567777766544 5679999999999877 56643 23333445677899999
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHH-HHHhhhh---cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047992 619 LGKKVFCSITECYQIIPMIEHYSA-MIDLYGR---SGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIER 694 (868)
Q Consensus 619 ~a~~~~~~m~~~~~~~p~~~~y~~-lvd~l~r---~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~ 694 (868)
++..+-..-...|...|=...|.. ++.++.+ .-+.+.-.+++..|+-+--..+|-.+...-.+.|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 998888887777887776554433 3333333 334445455555553222344777777788899999999999999
Q ss_pred HhccCCCCchhHHHHHHHHhhc
Q 047992 695 LFDLEPGDVLIQRLILQIYAIC 716 (868)
Q Consensus 695 ~~~l~p~~~~~~~~l~~~y~~~ 716 (868)
++.+.+. .+.-...+++|..+
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aa 303 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGA 303 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHH
Confidence 9998843 44555566666654
No 259
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.54 E-value=0.28 Score=31.63 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 047992 671 IWEALLTACRIHGNIDLAVLAIERLFDLEPGD 702 (868)
Q Consensus 671 ~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 702 (868)
+|..+...+...|+++.|...++++++++|+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 57777888888999999999999999999853
No 260
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=91.44 E-value=24 Score=38.38 Aligned_cols=131 Identities=18% Similarity=0.178 Sum_probs=90.7
Q ss_pred CCceecHHHHHHHHhcCC-h-HHHHHHHHHHHHCCCCCCHHHHH-HHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHH
Q 047992 564 KDIITWNSLICGYVLHGF-W-HAALDLFDQMKSFGLKPNRGTFL-SIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHY 640 (868)
Q Consensus 564 ~d~~~~~~li~~~~~~g~-~-~~A~~l~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y 640 (868)
+-..+|++.+ .|+ . ...+.++-.....-..|+.+|+. .++.-+...|-+.+|+..|.++.. --+|+...|
T Consensus 425 ~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~ 497 (568)
T KOG2396|consen 425 ELLISWASAS-----EGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLF 497 (568)
T ss_pred hhHHHHHHHh-----hccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHH
Confidence 4455676665 222 1 22223333333333678887775 456667788899999999998876 334667778
Q ss_pred HHHHHhhh---hcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCC
Q 047992 641 SAMIDLYG---RSGKLEEAMEFIEDM--PIEPDSSIWEALLTACRIHGNIDLAVLAIERLFD-LEPGD 702 (868)
Q Consensus 641 ~~lvd~l~---r~g~~~eA~~~i~~~--~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~-l~p~~ 702 (868)
--||..-. .+| +.-+.++++.| .+-.|+.+|...+.--+.+|..+.+-.++.++++ ++|+.
T Consensus 498 r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~ 564 (568)
T KOG2396|consen 498 RKMIQFEKEQESCN-LANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAMKTLQGES 564 (568)
T ss_pred HHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHHHhhChhh
Confidence 88876532 333 88888888888 4568889999999999999999999888888876 56653
No 261
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.40 E-value=1.1 Score=44.26 Aligned_cols=99 Identities=11% Similarity=0.176 Sum_probs=77.5
Q ss_pred HHHHHhcCC--CCCceecHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC-----------
Q 047992 554 SRTIFDGMS--SKDIITWNSLICGYVLH-----GFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAG----------- 615 (868)
Q Consensus 554 A~~~f~~~~--~~d~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----------- 615 (868)
.+..|.... ++|-.+|-+++..+..+ ++.+=--..++.|.+.|+.-|-.+|..||+.+=+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 355666666 57778888888888765 344555566788999999999999999998665443
Q ss_pred -----ChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCCh
Q 047992 616 -----MVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKL 653 (868)
Q Consensus 616 -----~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~ 653 (868)
+-+=|+.++++|.. +|+.|+-+.-..++.++||.|..
T Consensus 133 ~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhcccccc
Confidence 23447788999976 89999999999999999998864
No 262
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.19 E-value=1.7 Score=43.25 Aligned_cols=95 Identities=17% Similarity=0.166 Sum_probs=66.7
Q ss_pred hhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCC
Q 047992 611 HSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDM----PIEPDS-SIWEALLTACRIHGN 684 (868)
Q Consensus 611 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~----~~~p~~-~~w~~ll~a~~~~~~ 684 (868)
+..+|++.+|..-|....+.|.-.+ ....+--|..++.+.|++++|...|..+ |-.|-. ...--|.......||
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 3456778888888888888775433 3445667888888888888888877665 433332 244445555567788
Q ss_pred HHHHHHHHHHHhccCCCCchh
Q 047992 685 IDLAVLAIERLFDLEPGDVLI 705 (868)
Q Consensus 685 ~~~a~~~~~~~~~l~p~~~~~ 705 (868)
.+.|...++++.+-.|+.+.+
T Consensus 231 ~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 231 TDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHHHHHHHHCCCCHHH
Confidence 888888888888888877654
No 263
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.15 E-value=4.3 Score=42.81 Aligned_cols=92 Identities=12% Similarity=0.102 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 047992 536 PVMNSLIDTYAKSGNIVYSRTIFDGM---SSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHS 612 (868)
Q Consensus 536 ~~~~~Li~~y~k~g~~~~A~~~f~~~---~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 612 (868)
.+++.|.-+|.|.+++..|.+.-+.. .++|+-..-.-..+|+..|+++.|...|+++++ +.|+...-..=|..|.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHH
Confidence 45677888899999999998888754 467888888888899999999999999999999 8898766665555554
Q ss_pred c--cCChHHHHHHHHHhhh
Q 047992 613 L--AGMVDLGKKVFCSITE 629 (868)
Q Consensus 613 ~--~g~~~~a~~~~~~m~~ 629 (868)
+ .-..+...++|..|..
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 2 2233344555555544
No 264
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.14 E-value=2.6 Score=47.08 Aligned_cols=81 Identities=21% Similarity=0.185 Sum_probs=39.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHhhccCChHHHHHHHHHhhhhcCCCCChhH--HHHHHHhhhhcCChHHHH
Q 047992 581 FWHAALDLFDQMKSFGLKPNRGTFLSII-LAHSLAGMVDLGKKVFCSITECYQIIPMIEH--YSAMIDLYGRSGKLEEAM 657 (868)
Q Consensus 581 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~--y~~lvd~l~r~g~~~eA~ 657 (868)
..+.|.++++++.+ --|+..-|.-.- ..+...|++++|++.|+.......--|...| +--+...+.-.+++++|.
T Consensus 248 ~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 34555555555555 345554443322 2334456666666666543322222233332 222344455566667766
Q ss_pred HHHHhC
Q 047992 658 EFIEDM 663 (868)
Q Consensus 658 ~~i~~~ 663 (868)
+.+..+
T Consensus 326 ~~f~~L 331 (468)
T PF10300_consen 326 EYFLRL 331 (468)
T ss_pred HHHHHH
Confidence 666666
No 265
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.87 E-value=4.7 Score=44.47 Aligned_cols=156 Identities=16% Similarity=0.160 Sum_probs=99.5
Q ss_pred HHhCCChhHHHHHHH--HhHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChH
Q 047992 132 YSRDQRWREVVELFF--LMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLI 209 (868)
Q Consensus 132 ~~~~g~~~~a~~l~~--~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 209 (868)
..-+++++++.++.. ++. ..++ ..-...+++-+-+.|..+.|.++- .|. ..-.+...++|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll-~~i~--~~~~~~i~~fL~~~G~~e~AL~~~---------~D~---~~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLL-PNIP--KDQGQSIARFLEKKGYPELALQFV---------TDP---DHRFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTG-GG----HHHHHHHHHHHHHTT-HHHHHHHS---------S-H---HHHHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhc-ccCC--hhHHHHHHHHHHHCCCHHHHHhhc---------CCh---HHHhHHHHhcCCHH
Confidence 344566666655554 111 1111 223555666666666666665542 222 23456677899999
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 047992 210 WARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGI 289 (868)
Q Consensus 210 ~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 289 (868)
.|.+..++.. +...|..|.....+.|+++-|.+.|.+..+ +..|+-.|.-.|+.+.-.++.+....+|
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~- 403 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG- 403 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-
Confidence 9998877765 667899999999999999999999988764 6778888888999888888877776553
Q ss_pred CCCeeeHHHHHHHHHhcCChhHHHHHHHHH
Q 047992 290 TPDVFTWTCMISGFAQNGRTSQALDLFKEM 319 (868)
Q Consensus 290 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 319 (868)
-+|....++.-.|+.++..+++.+-
T Consensus 404 -----~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 -----DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -----CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2677777777778888888777653
No 266
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.81 E-value=5.4 Score=36.58 Aligned_cols=91 Identities=12% Similarity=0.028 Sum_probs=60.0
Q ss_pred HHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHH
Q 047992 609 LAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMP-IEPDSSIWEALLTACRIHGNIDL 687 (868)
Q Consensus 609 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~-~~p~~~~w~~ll~a~~~~~~~~~ 687 (868)
+.-...++.+++..++..+.--..-.|.. -.+-+.++.+.|++.+|..++++.. -.|....-.+|+.-|.....-..
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~~~e~--~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPEFPEL--DLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCCchHH--HHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 33345566666666666665422222323 3334556778899999999999883 34555566788888887766666
Q ss_pred HHHHHHHHhccCCC
Q 047992 688 AVLAIERLFDLEPG 701 (868)
Q Consensus 688 a~~~~~~~~~l~p~ 701 (868)
=...++.+++-+|+
T Consensus 96 Wr~~A~evle~~~d 109 (160)
T PF09613_consen 96 WRRYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHHhcCCC
Confidence 67778888887774
No 267
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.56 E-value=23 Score=36.56 Aligned_cols=135 Identities=11% Similarity=0.062 Sum_probs=69.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc--------CCccCh-----hhHHHHHHHHHhcCChH---HHHHHHHHHHhcCC
Q 047992 226 WNSMISGYFQIGENDEAHRLFDKMCRE--------EIKLGV-----VTFNILIRSYNQLGQCD---VAMEMVKRMESLGI 289 (868)
Q Consensus 226 ~~~li~~~~~~g~~~~A~~l~~~m~~~--------g~~p~~-----~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~ 289 (868)
||.-.+.+.+..++++|...+++..+. ...|+. .+...++.+|...+..+ +|.++++.+.....
T Consensus 39 yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~ 118 (278)
T PF08631_consen 39 YNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYG 118 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC
Confidence 444444444433666666555554322 122222 35666777777776654 45555556644432
Q ss_pred CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhch--hhHHHHHHHHHHHHHhCCCCC
Q 047992 290 TPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDL--KALAMGMEIHSLAVKMGFTDD 362 (868)
Q Consensus 290 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~--~~~~~a~~i~~~~~~~g~~~~ 362 (868)
. ....+-.-+..+.+.++.+++.+.+.+|... +.-....+..++...... .....+...+..++...+.+.
T Consensus 119 ~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 119 N-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred C-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 2 3445555566666688888888888888754 332334455555544222 122334444444444433333
No 268
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.51 E-value=22 Score=41.39 Aligned_cols=47 Identities=15% Similarity=0.177 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhc
Q 047992 224 VAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQL 271 (868)
Q Consensus 224 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 271 (868)
..--++|--+.+.|.+++|.++..+... ........+...+..|...
T Consensus 112 ~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 112 DPIWALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EEHHHHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTT
T ss_pred CccHHHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhC
Confidence 3344667777788888888887744432 2334445555556665553
No 269
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.39 E-value=5 Score=43.54 Aligned_cols=145 Identities=12% Similarity=0.039 Sum_probs=74.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHH--
Q 047992 578 LHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEE-- 655 (868)
Q Consensus 578 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~e-- 655 (868)
+..+.+.-+++-++.++ +.||-.+-..+| |--.+.-+.|+..+|++..+.- . ..|++....+.
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAg-----E-------~~lg~s~~~~~~g 244 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAG-----E-------ASLGKSQFLQHHG 244 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHH-----H-------Hhhchhhhhhccc
Confidence 34455666666666666 667765544333 3334455677777777654410 0 01111111100
Q ss_pred -HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--CchhHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 656 -AMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPG--DVLIQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 656 -A~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
..+.+.+-..+|-..+=.-|...+++.|..++|.+.++.+++..|. +-+.+..|.+.|-..+++.|+..+..+=.+-
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 1111111112222333344555566677777777777777766553 4455666666777777777777766554433
Q ss_pred CCCCC
Q 047992 733 TRRNS 737 (868)
Q Consensus 733 ~~~k~ 737 (868)
...|.
T Consensus 325 ~lpkS 329 (539)
T PF04184_consen 325 SLPKS 329 (539)
T ss_pred cCCch
Confidence 33333
No 270
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.35 E-value=0.037 Score=50.75 Aligned_cols=76 Identities=12% Similarity=0.166 Sum_probs=39.3
Q ss_pred hhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHH
Q 047992 513 LVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQ 591 (868)
Q Consensus 513 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 591 (868)
.+......+....+.+.+...+..+.+.|+.+|++.+..+...+.++.... .-...++..+-++|.+++|.-++.+
T Consensus 20 ~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a~~Ly~~ 95 (143)
T PF00637_consen 20 RNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEAVYLYSK 95 (143)
T ss_dssp TT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHHHHHHHH
Confidence 333333344444444444445677778888888887666666666553222 3334444455555555555544443
No 271
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.33 E-value=3 Score=42.43 Aligned_cols=159 Identities=13% Similarity=-0.088 Sum_probs=104.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHH----HHhhhhcCCh
Q 047992 578 LHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAM----IDLYGRSGKL 653 (868)
Q Consensus 578 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l----vd~l~r~g~~ 653 (868)
-.|+..+|...++++++. .+.|-..+.-.=.+|...|..+.-+..++.+... ..|+...|+-+ .-.|...|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 367788888888988874 4446677777778899999998888888887763 35555444433 2345578889
Q ss_pred HHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCC----CCchhHHHHHHHHhhcCCChhHHHHHH
Q 047992 654 EEAMEFIEDM-PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFDLEP----GDVLIQRLILQIYAICGKPEDALKVRK 727 (868)
Q Consensus 654 ~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p----~~~~~~~~l~~~y~~~g~~~~a~~~~~ 727 (868)
++|++.-++. .+.|... .-.++.......|+..+|.+..++--..=. --+.+|-.-+-.|...+.++.|.+++.
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999888887 5555433 445555666677888888776554322111 113445555666777788888888865
Q ss_pred HHHhcCCCCCCc
Q 047992 728 LERENTRRNSFG 739 (868)
Q Consensus 728 ~m~~~~~~k~~g 739 (868)
.---+.+.|.-+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 443334444444
No 272
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.14 E-value=2 Score=37.28 Aligned_cols=53 Identities=23% Similarity=0.204 Sum_probs=36.3
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCChHHHHHHHHHhhh
Q 047992 575 GYVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSIILAHSLAGMVDLGKKVFCSITE 629 (868)
Q Consensus 575 ~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 629 (868)
+.+..|+.+.|++.|.+.+. +-| +...|+.-..++.-.|++++|+.-++...+
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 56667777777777777776 454 346677777777777777777766666555
No 273
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=90.01 E-value=16 Score=39.04 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=13.8
Q ss_pred hhHHHHHHhcCCHHHHHHHHHhcc
Q 047992 433 NVLISGYIQNGNEDEAVDLFQRMG 456 (868)
Q Consensus 433 ~~li~~~~~~g~~~~A~~~f~~m~ 456 (868)
.+++.++.-.|+.+.|.+..++|.
T Consensus 309 ATl~Ea~vL~~d~~ka~~a~e~~~ 332 (374)
T PF13281_consen 309 ATLLEASVLAGDYEKAIQAAEKAF 332 (374)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh
Confidence 455555555566666666666554
No 274
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=89.42 E-value=2.9 Score=46.82 Aligned_cols=157 Identities=15% Similarity=0.076 Sum_probs=98.4
Q ss_pred cHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH-----HHHHHHH-Hhhc---cCChHHHHHHHHHhhhhcCCCCChh
Q 047992 569 WNSLICGYVLHGFWHAALDLFDQMKSFG-LKPNRG-----TFLSIIL-AHSL---AGMVDLGKKVFCSITECYQIIPMIE 638 (868)
Q Consensus 569 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~-----t~~~ll~-a~~~---~g~~~~a~~~~~~m~~~~~~~p~~~ 638 (868)
...+++..+-+|+-+.+++++.+..+.+ ++-.-. +|..++. .|.. ...++.+.+++..+.+.| |+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcH
Confidence 4567777888999999999998876532 221111 1222222 3332 556778888888888765 4433
Q ss_pred HHHHH-HHhhhhcCChHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhH-HHHH
Q 047992 639 HYSAM-IDLYGRSGKLEEAMEFIEDMPI-E-----PDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQ-RLIL 710 (868)
Q Consensus 639 ~y~~l-vd~l~r~g~~~eA~~~i~~~~~-~-----p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~-~~l~ 710 (868)
.|..+ ..++...|++++|.+.++++-. + -....+--+...+....|++.|...+.++.+...-..+.| ...+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 33222 3456668899999999886521 1 1122333345556678889999999999888776655554 4556
Q ss_pred HHHhhcCCChhHHHHHHH
Q 047992 711 QIYAICGKPEDALKVRKL 728 (868)
Q Consensus 711 ~~y~~~g~~~~a~~~~~~ 728 (868)
-.|...|+-+++.+.++.
T Consensus 348 ~c~~~l~~~~~~~~~~~~ 365 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKE 365 (468)
T ss_pred HHHHhhccchhhhhhHHH
Confidence 677788888666554333
No 275
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=89.37 E-value=21 Score=35.51 Aligned_cols=158 Identities=18% Similarity=0.160 Sum_probs=96.1
Q ss_pred HhcCCHHHHHHHHhcCCCCCce------ecHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCH--HHHHHHHHHhhc---
Q 047992 546 AKSGNIVYSRTIFDGMSSKDII------TWNSLICGYVLHGFWHAALDLFDQMKSF-GLKPNR--GTFLSIILAHSL--- 613 (868)
Q Consensus 546 ~k~g~~~~A~~~f~~~~~~d~~------~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~--~t~~~ll~a~~~--- 613 (868)
.+.|++++|.+.|+.+....+. +--.++-++-+.|++++|+..+++.... +-.||. +.|...|+-+..
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 3678999999999988754322 2233455666788999999999988772 333332 444444442222
Q ss_pred -cCCh---HHHHHHHHHhhhhcCCCC---Ch------------hHHHHHHHhhhhcCChHHHHHHHHhC----CCCCCHH
Q 047992 614 -AGMV---DLGKKVFCSITECYQIIP---MI------------EHYSAMIDLYGRSGKLEEAMEFIEDM----PIEPDSS 670 (868)
Q Consensus 614 -~g~~---~~a~~~~~~m~~~~~~~p---~~------------~~y~~lvd~l~r~g~~~eA~~~i~~~----~~~p~~~ 670 (868)
..+. .+|..-|+..+++|.-.+ +. .|=-.+...|.+-|.+.-|..-++.| |-.+-..
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~ 204 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVR 204 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchH
Confidence 2233 344455555555554432 21 12233456677888888887777776 2222211
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 047992 671 -IWEALLTACRIHGNIDLAVLAIERLFDLEPGDV 703 (868)
Q Consensus 671 -~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 703 (868)
..--+..++...|-.++|..+.+-+-.-.|++.
T Consensus 205 eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 205 EALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 445567889999999999998766666666654
No 276
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.05 E-value=15 Score=38.19 Aligned_cols=48 Identities=17% Similarity=0.273 Sum_probs=28.3
Q ss_pred hHHHHHHHHhHHCCCCCCcchHHHHHHHhhC--CCC----hHHHHHHHHHHHHh
Q 047992 139 REVVELFFLMVQDGLFPDDFLFPKILQACGN--CGD----FEAGKLMHSLVIKL 186 (868)
Q Consensus 139 ~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~--~~~----~~~a~~~~~~~~~~ 186 (868)
++.+.+++.|.+.|++-+.++|.+.+-.... ..+ ...++.+|..|.+.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 3556777888888888887777664443332 111 33455555555554
No 277
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.59 E-value=26 Score=34.42 Aligned_cols=23 Identities=9% Similarity=0.164 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhc
Q 047992 538 MNSLIDTYAKSGNIVYSRTIFDG 560 (868)
Q Consensus 538 ~~~Li~~y~k~g~~~~A~~~f~~ 560 (868)
++--..+|..||..+.|-..+++
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleK 116 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEK 116 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHH
Confidence 44455566666666665554443
No 278
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=88.30 E-value=11 Score=42.62 Aligned_cols=100 Identities=20% Similarity=0.298 Sum_probs=67.2
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhH-HHHHHHhhhhc
Q 047992 575 GYVLHGFWHAALDLFDQMKSFGLKPNRG---TFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEH-YSAMIDLYGRS 650 (868)
Q Consensus 575 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-y~~lvd~l~r~ 650 (868)
.|-..+..+.|++.|++.-+ +.|+.. .+..+|.|-.+ .|+.-.+ ..+ =-.+-.++||.
T Consensus 296 ~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~---------~Fens~E-------lq~IgmkLn~LlgrK 357 (1226)
T KOG4279|consen 296 NYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE---------HFENSLE-------LQQIGMKLNSLLGRK 357 (1226)
T ss_pred CCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh---------hccchHH-------HHHHHHHHHHHhhcc
Confidence 44555667788899998887 788763 34444443221 1221111 001 12345678999
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 047992 651 GKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGD 702 (868)
Q Consensus 651 g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 702 (868)
|.++.-.++++- .+.+++....+|+..|.+++++++++.|..
T Consensus 358 G~leklq~YWdV----------~~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 358 GALEKLQEYWDV----------ATYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred chHHHHHHHHhH----------HHhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 999988887763 356778888899999999999999999854
No 279
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=88.17 E-value=0.97 Score=32.75 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=28.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 047992 675 LLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLIL 710 (868)
Q Consensus 675 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 710 (868)
|.-++.+.|+++.|.+..+.+++++|+|..+-.+..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 455788999999999999999999999876655543
No 280
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=87.99 E-value=50 Score=36.98 Aligned_cols=125 Identities=11% Similarity=0.090 Sum_probs=81.7
Q ss_pred chHHHHHHHHhCCChhHHHHHHHHHhhcCCCCCcc-cHHHHHHHHhccCChHHHHHHHHHhhhcCCCChhhhhHHHHHH-
Q 047992 24 FRDTHLDFLCGNGRLNEAITVLDSIATQGAKVRRN-TYINLLQACIDSNSIHLARKLHAFLNLVTEIDVFVKTKLLSVY- 101 (868)
Q Consensus 24 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~li~~~- 101 (868)
.|+.++.---.....+.+...++.++.. -|.-. -|......=.+.|..+.+..++++-..+++.+..++.......
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~ 124 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLK 124 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 4666665444444444455556666543 22222 2222323334567888888888887777777877777766654
Q ss_pred HhcCChhHHHHHHhhcCC------CCceeHHHHHHHHHhCCChhHHHHHHHHhHH
Q 047992 102 AKCGCLDDAREVFEDMRE------RNLYTWSAMIGAYSRDQRWREVVELFFLMVQ 150 (868)
Q Consensus 102 ~~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 150 (868)
...|+.+.-+..|+.... ....-|...|.--..++++.....+|++.++
T Consensus 125 n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 125 NNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred ccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 345778888888887643 2334588888888888999999999999876
No 281
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.91 E-value=1.1 Score=31.06 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=24.8
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRG 602 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 602 (868)
.|..+...|...|++++|+++|++.++ ..||..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 466677788888888888888888887 567654
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.73 E-value=0.82 Score=30.03 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 047992 672 WEALLTACRIHGNIDLAVLAIERLFDL 698 (868)
Q Consensus 672 w~~ll~a~~~~~~~~~a~~~~~~~~~l 698 (868)
|..|...|...|+++.|+.++++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556666777777777777777775443
No 283
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.60 E-value=3.1 Score=38.09 Aligned_cols=52 Identities=21% Similarity=0.121 Sum_probs=33.0
Q ss_pred hcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 681 IHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 681 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
.+++.+.++..+.-+.-+.|+.+..-..-++++...|+|.||.++.+.+.++
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 4556666666666666666666666666666666666666666666555443
No 284
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.48 E-value=3.8 Score=41.77 Aligned_cols=112 Identities=17% Similarity=0.141 Sum_probs=64.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCC
Q 047992 574 CGYVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGK 652 (868)
Q Consensus 574 ~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~ 652 (868)
.-|.++|.+++|++.|.+... +.| |.+++..-..||.+...+..|..-.+....- -...+.+|.|
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSR--- 170 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSR--- 170 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHH---
Confidence 346677777777777777666 566 6677766666665554444333222221110 0011222222
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHH
Q 047992 653 LEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKV 725 (868)
Q Consensus 653 ~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 725 (868)
-..|-...|+.++|.+-+|.+++|+|++- -|-.+|++..-..|+.-+
T Consensus 171 ----------------------R~~AR~~Lg~~~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 171 ----------------------RMQARESLGNNMEAKKDCETVLALEPKNI----ELKKSLARINSLRERKIA 217 (536)
T ss_pred ----------------------HHHHHHHHhhHHHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhhHH
Confidence 23333456788889999999999999853 455566665555555444
No 285
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.20 E-value=36 Score=34.43 Aligned_cols=147 Identities=18% Similarity=0.150 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhh--------------------hc-----CCCCCh
Q 047992 583 HAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITE--------------------CY-----QIIPMI 637 (868)
Q Consensus 583 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~--------------------~~-----~~~p~~ 637 (868)
.+|+++|--+.+. +--.++-.-++.+....-+..+|-.+|+...- .| +..-++
T Consensus 150 ~KA~ELFayLv~h--kgk~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~Dv 227 (361)
T COG3947 150 RKALELFAYLVEH--KGKEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYDV 227 (361)
T ss_pred hHHHHHHHHHHHh--cCCcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccccH
Confidence 5677777776663 22233444455555555555555555543211 01 112233
Q ss_pred hHHHHHHHhhh-hcCChHHHHHHHHhCC--CCC--------C-----HHHHHHHH----HHHHhcCCHHHHHHHHHHHhc
Q 047992 638 EHYSAMIDLYG-RSGKLEEAMEFIEDMP--IEP--------D-----SSIWEALL----TACRIHGNIDLAVLAIERLFD 697 (868)
Q Consensus 638 ~~y~~lvd~l~-r~g~~~eA~~~i~~~~--~~p--------~-----~~~w~~ll----~a~~~~~~~~~a~~~~~~~~~ 697 (868)
.-|-..+.-.. +.-.++++.+++.... +-| | ..++..++ .+|...|++..|.+..++++.
T Consensus 228 ~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~lt 307 (361)
T COG3947 228 QEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALT 307 (361)
T ss_pred HHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Confidence 34444433222 2345677777776651 111 1 12444444 467889999999999999999
Q ss_pred cCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 698 LEPGDVLIQRLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 698 l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
++|-+...+-.|.++|+..|+--+|.+-+..|.+
T Consensus 308 ldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 308 LDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 9999999999999999999998888888777653
No 286
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.14 E-value=0.028 Score=51.59 Aligned_cols=85 Identities=14% Similarity=0.131 Sum_probs=58.7
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHH
Q 047992 163 ILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEA 242 (868)
Q Consensus 163 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A 242 (868)
+++.+.+.+.+......++.+.+.+...+..+.+.++..|++.++.+...++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 5666666677777777777777777667788889999999999887888887774332 4445666666777777777
Q ss_pred HHHHHHHH
Q 047992 243 HRLFDKMC 250 (868)
Q Consensus 243 ~~l~~~m~ 250 (868)
.-++.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 66665543
No 287
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.66 E-value=2 Score=40.31 Aligned_cols=86 Identities=19% Similarity=0.109 Sum_probs=59.0
Q ss_pred hhhcCChHHHHHHHHhC--CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCC
Q 047992 647 YGRSGKLEEAMEFIEDM--PIEP-----DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKP 719 (868)
Q Consensus 647 l~r~g~~~eA~~~i~~~--~~~p-----~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 719 (868)
+...|.+++|..-+..+ .++| ..+.+..-..|..+.+..+.|.....+++++.|.+-.+..-.+..|....++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 34556666666665544 1111 1223333344445678888888888888899888888888888888888888
Q ss_pred hhHHHHHHHHHhc
Q 047992 720 EDALKVRKLEREN 732 (868)
Q Consensus 720 ~~a~~~~~~m~~~ 732 (868)
++|.+-++.+.+.
T Consensus 185 eealeDyKki~E~ 197 (271)
T KOG4234|consen 185 EEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHh
Confidence 8888887777654
No 288
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.44 E-value=11 Score=34.81 Aligned_cols=52 Identities=19% Similarity=0.330 Sum_probs=32.4
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCeeehhhHH-----HHHHhcCCHHHHHHHHHhcccCC
Q 047992 404 YCQAGYCGKAYELFIKMQESDVPPNVITWNVLI-----SGYIQNGNEDEAVDLFQRMGKND 459 (868)
Q Consensus 404 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li-----~~~~~~g~~~~A~~~f~~m~~~~ 459 (868)
+++.+..++|+.-|.++.+.|.. .|-.|. ....+.|+...|...|+++-...
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g----~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt 124 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYG----SYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT 124 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCC----cchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC
Confidence 45667778888888888766532 232222 23456677777777777775543
No 289
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.33 E-value=3.7 Score=36.90 Aligned_cols=53 Identities=11% Similarity=0.000 Sum_probs=43.3
Q ss_pred hcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcC
Q 047992 681 IHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENT 733 (868)
Q Consensus 681 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 733 (868)
...+.+.++.+.+.+--+.|+.+..-..-++++...|+|+||.++.+...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 37888888888888888888888888888888888888888888877665443
No 290
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=86.04 E-value=29 Score=32.30 Aligned_cols=133 Identities=17% Similarity=0.088 Sum_probs=58.6
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHhccCChHHHHHHHHHhhhcCCCChhhhhHHHHHHHhcCChhHHHHHHhhcCCCCce
Q 047992 44 VLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFLNLVTEIDVFVKTKLLSVYAKCGCLDDAREVFEDMRERNLY 123 (868)
Q Consensus 44 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~ 123 (868)
.+..+...+++|+...+..+++.+.+.|.+....++.+ -.-++++..+...|++.-. ....+.++=-.|-.+=..
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq--~~Vi~DSk~lA~~LLs~~~---~~~~~~Ql~lDMLkRL~~ 90 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ--YHVIPDSKPLACQLLSLGN---QYPPAYQLGLDMLKRLGT 90 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh--hcccCCcHHHHHHHHHhHc---cChHHHHHHHHHHHHhhh
Confidence 34444455555555566666666665555443332222 1122233333333333211 112222222222222112
Q ss_pred eHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHH
Q 047992 124 TWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIK 185 (868)
Q Consensus 124 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 185 (868)
.+..++..+...|++-+|+++.+.... .+...-..++.+....+|...--.++.....
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555666666666666666655321 1222234455555555555544445544444
No 291
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.74 E-value=1.2 Score=28.64 Aligned_cols=31 Identities=23% Similarity=0.449 Sum_probs=24.5
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN 600 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 600 (868)
+|..+...|...|++++|++.|++.++ +.|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 577788888888888888888888888 6665
No 292
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.44 E-value=56 Score=34.95 Aligned_cols=145 Identities=11% Similarity=-0.012 Sum_probs=73.2
Q ss_pred CceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhhccCChHHHHHHHHHhhhh-cCCCCChhHH
Q 047992 565 DIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKP---NRGTFLSIILAHSLAGMVDLGKKVFCSITEC-YQIIPMIEHY 640 (868)
Q Consensus 565 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~~~~y 640 (868)
...+|..++..+.++|+++.|...+.++...+..+ +...+..-.......|+-++|...++...+. ..-.......
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 34467777777777777777777777776633211 1122222333445556667777766665551 1111000001
Q ss_pred HHHHHhhhhcCChHHHHHHHHhCC-CCC----CHHHHHHHHHHHHh------cCCHHHHHHHHHHHhccCCCCchhHHHH
Q 047992 641 SAMIDLYGRSGKLEEAMEFIEDMP-IEP----DSSIWEALLTACRI------HGNIDLAVLAIERLFDLEPGDVLIQRLI 709 (868)
Q Consensus 641 ~~lvd~l~r~g~~~eA~~~i~~~~-~~p----~~~~w~~ll~a~~~------~~~~~~a~~~~~~~~~l~p~~~~~~~~l 709 (868)
..+...+. + ..+....-. ... -..++..+..-+.. +++.+.+...++++.++.|+...+|..+
T Consensus 225 ~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~ 298 (352)
T PF02259_consen 225 AELKSGLL-----E-SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSW 298 (352)
T ss_pred HHHhhccc-----c-ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 10100000 0 000000000 000 01122222222333 3888999999999999999999888888
Q ss_pred HHHHhh
Q 047992 710 LQIYAI 715 (868)
Q Consensus 710 ~~~y~~ 715 (868)
+..+..
T Consensus 299 a~~~~~ 304 (352)
T PF02259_consen 299 ALFNDK 304 (352)
T ss_pred HHHHHH
Confidence 877644
No 293
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.05 E-value=7.8 Score=31.86 Aligned_cols=68 Identities=24% Similarity=0.269 Sum_probs=48.3
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcCCC
Q 047992 656 AMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRR 735 (868)
Q Consensus 656 A~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 735 (868)
++.-+-.+..-|++.+..+-|.|||+-+|+..|.+.+|-+-..-..+...|-.+. .+++-.|.+.|+.
T Consensus 29 ~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l------------qeikp~l~ELGI~ 96 (103)
T cd00923 29 GLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL------------QEIKPTLKELGIS 96 (103)
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH------------HHHhHHHHHHCCC
Confidence 3333444567899999999999999999999999999977633322444444433 3567777777764
No 294
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=84.69 E-value=1.5 Score=28.79 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=18.3
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHH
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMK 593 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~ 593 (868)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677777777788888888777754
No 295
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=84.58 E-value=5.4 Score=40.49 Aligned_cols=73 Identities=19% Similarity=0.335 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHh-----CCccCCcccHH
Q 047992 259 VTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSF-----VGVMPNGVTIT 332 (868)
Q Consensus 259 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~t~~ 332 (868)
.++..++..+..+|+.+.+.+.++++....+. |...|..+|.+|.++|+...|+..|+++.+ .|+.|...+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 34566667777788888888888888777655 778888888888888888888888887754 45666554433
No 296
>PRK09687 putative lyase; Provisional
Probab=84.19 E-value=55 Score=33.79 Aligned_cols=235 Identities=11% Similarity=0.021 Sum_probs=107.5
Q ss_pred ChhhhhHHHHHHHhcCChhHHHHHHhhcCCCCceeHHHHHHHHHhCCCh----hHHHHHHHHhHHCCCCCCcchHHHHHH
Q 047992 90 DVFVKTKLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRW----REVVELFFLMVQDGLFPDDFLFPKILQ 165 (868)
Q Consensus 90 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~a~~l~~~m~~~g~~p~~~t~~~ll~ 165 (868)
|..+.-..+..+.+.|..+-...+..-...+|...-...+.++.+-|+. .+++.++..+... .|+...-.+.+.
T Consensus 36 d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~ 113 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAIN 113 (280)
T ss_pred CHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHH
Confidence 3334444444444444322222222222233444334444555555543 3455555555322 344444444455
Q ss_pred HhhCCCChH--HHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcC-ChhHH
Q 047992 166 ACGNCGDFE--AGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIG-ENDEA 242 (868)
Q Consensus 166 ~~~~~~~~~--~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g-~~~~A 242 (868)
+++..+... ............-.+++..+.-..+.++.+.|+.+....+..-+..+|...-...+.++.+.+ ....+
T Consensus 114 aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~ 193 (280)
T PRK09687 114 ATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDI 193 (280)
T ss_pred HHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHH
Confidence 544433211 011122222222224455666666666666666444444444444445444444445555432 23455
Q ss_pred HHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047992 243 HRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFV 322 (868)
Q Consensus 243 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 322 (868)
...+..+.. .++..+-...+.++.+.|+. .|...+-...+.+ + ..-..+.++...|.. +|+..+.++...
T Consensus 194 ~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~ 263 (280)
T PRK09687 194 REAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK 263 (280)
T ss_pred HHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh
Confidence 555555553 45666666666677776663 3444444433321 1 233455555565653 466666655432
Q ss_pred CccCCcccHHHHHHHH
Q 047992 323 GVMPNGVTITSAISAC 338 (868)
Q Consensus 323 g~~pd~~t~~~ll~a~ 338 (868)
.||...-...+.+|
T Consensus 264 --~~d~~v~~~a~~a~ 277 (280)
T PRK09687 264 --FDDNEIITKAIDKL 277 (280)
T ss_pred --CCChhHHHHHHHHH
Confidence 23444444444333
No 297
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=84.15 E-value=1.1e+02 Score=37.36 Aligned_cols=84 Identities=12% Similarity=0.083 Sum_probs=40.3
Q ss_pred HHHHhcCChhHHHHHHHHhhcCCCCCCHHh--HHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 047992 473 AGYQQLGQKNNALGVFRKMQSSCFYPNCVT--ILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGN 550 (868)
Q Consensus 473 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~ 550 (868)
.+|..+|++.+|+.+..+|.. .-|... -..+.+-+...+..-.|-++...... | ..--+..|++.-.
T Consensus 973 ~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s-----d---~~~av~ll~ka~~ 1041 (1265)
T KOG1920|consen 973 KAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLS-----D---PEEAVALLCKAKE 1041 (1265)
T ss_pred HHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc-----C---HHHHHHHHhhHhH
Confidence 344455667777777666632 111111 12233333333443333333322211 1 1233456677777
Q ss_pred HHHHHHHHhcCCCCCce
Q 047992 551 IVYSRTIFDGMSSKDII 567 (868)
Q Consensus 551 ~~~A~~~f~~~~~~d~~ 567 (868)
+++|.++-......|.+
T Consensus 1042 ~~eAlrva~~~~~~d~i 1058 (1265)
T KOG1920|consen 1042 WEEALRVASKAKRDDII 1058 (1265)
T ss_pred HHHHHHHHHhcccchHH
Confidence 88888777665544443
No 298
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=83.11 E-value=9.8 Score=31.68 Aligned_cols=68 Identities=25% Similarity=0.250 Sum_probs=43.7
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcCCC
Q 047992 656 AMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRR 735 (868)
Q Consensus 656 A~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 735 (868)
++.-+-.+..-|++.+..+.|.|||+-+|+..|.+.+|-+-..-.+....|-.+. .+++-.+.+.||.
T Consensus 32 glN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l------------qElkPtl~ELGI~ 99 (108)
T PF02284_consen 32 GLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL------------QELKPTLEELGIP 99 (108)
T ss_dssp HHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH------------HHHHHHHHHHT--
T ss_pred HHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH------------HHHhhHHHHhCCC
Confidence 3333444567799999999999999999999999999988654433333444432 3567777777774
No 299
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.61 E-value=41 Score=31.23 Aligned_cols=129 Identities=14% Similarity=0.067 Sum_probs=85.5
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHH--HHhhhhcCC
Q 047992 576 YVLHGFWHAALDLFDQMKSFGLKPNRG-TFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAM--IDLYGRSGK 652 (868)
Q Consensus 576 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l--vd~l~r~g~ 652 (868)
+++.|..++|+.-|.++.+.|...-.+ .-.-......+.|+..+|..+|+.+-.+..++--..-..-+ .-+|.-.|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 567788888888888888876553322 22223344678899999999999887764442222111111 235667899
Q ss_pred hHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh
Q 047992 653 LEEAMEFIEDMPIEPDS---SIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLI 705 (868)
Q Consensus 653 ~~eA~~~i~~~~~~p~~---~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 705 (868)
+++-...++....+.++ ..-.+|.-+-.+.|++..|..-++.+.. |.+.|.+
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprn 202 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRN 202 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHH
Confidence 99888888877433332 3556677777889999999999998877 4433333
No 300
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=82.18 E-value=47 Score=34.51 Aligned_cols=92 Identities=17% Similarity=0.182 Sum_probs=58.3
Q ss_pred HHHHHHHHhcCCC-------CCceecHHHHHHHHhcCC----hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhc-cCC-
Q 047992 551 IVYSRTIFDGMSS-------KDIITWNSLICGYVLHGF----WHAALDLFDQMKSFGLKPNR-GTFLSIILAHSL-AGM- 616 (868)
Q Consensus 551 ~~~A~~~f~~~~~-------~d~~~~~~li~~~~~~g~----~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~-~g~- 616 (868)
+..|..+|+.|.+ ++-.++.+|+.. ..+. .+.+...|+.+...|+..+. .-+++-+-+... ...
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 4567777887764 233445555433 2222 35677888888888988855 455554444432 222
Q ss_pred -hHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 047992 617 -VDLGKKVFCSITECYQIIPMIEHYSAMID 645 (868)
Q Consensus 617 -~~~a~~~~~~m~~~~~~~p~~~~y~~lvd 645 (868)
+.....+++.+.+. ++++...||..+.=
T Consensus 197 ~v~r~~~l~~~l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 197 KVARVIELYNALKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHc-CCccccccccHHHH
Confidence 45778888888874 99999999876543
No 301
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.95 E-value=1.1e+02 Score=35.71 Aligned_cols=88 Identities=13% Similarity=0.043 Sum_probs=44.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhC-CCCCccHHHHHHHHHHc--
Q 047992 299 MISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMG-FTDDVLVGNSLINMYSK-- 375 (868)
Q Consensus 299 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-~~~~~~~~~~li~~y~~-- 375 (868)
....+.-.|+++.|++.+-+ ..+...|.+.+...+..+.-+.-..... ..++... -.+...-+..||..|.+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 44566778999999999877 2455566777776666654433322221 1111111 11112446678888876
Q ss_pred -CCCHHHHHHHHHhcCC
Q 047992 376 -CEELEAAERVFDMIKD 391 (868)
Q Consensus 376 -~g~~~~A~~vf~~~~~ 391 (868)
..+..+|...|-.+..
T Consensus 339 ~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 339 EITDPREALQYLYLICL 355 (613)
T ss_dssp TTT-HHHHHHHHHGGGG
T ss_pred hccCHHHHHHHHHHHHH
Confidence 4678888888877664
No 302
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=81.79 E-value=1.1e+02 Score=35.70 Aligned_cols=125 Identities=16% Similarity=0.231 Sum_probs=58.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc----CCccChhhHHHH-HHHHHhcCChHHHHHHHHHHHhcC---CCCCeeeHHHHH
Q 047992 229 MISGYFQIGENDEAHRLFDKMCRE----EIKLGVVTFNIL-IRSYNQLGQCDVAMEMVKRMESLG---ITPDVFTWTCMI 300 (868)
Q Consensus 229 li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li 300 (868)
++..+.+.+... |...+++..+. +..+-...|..+ +..+...++...|.+.++.+...- ..|-...+-.++
T Consensus 106 l~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~ 184 (608)
T PF10345_consen 106 LARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLS 184 (608)
T ss_pred HHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Confidence 344444444444 66666665432 112222333333 223333367777777777665432 222333444444
Q ss_pred HHHH--hcCChhHHHHHHHHHHhCCc---------cCCcccHHHHHHHHh--chhhHHHHHHHHHHH
Q 047992 301 SGFA--QNGRTSQALDLFKEMSFVGV---------MPNGVTITSAISACT--DLKALAMGMEIHSLA 354 (868)
Q Consensus 301 ~~~~--~~g~~~~A~~l~~~m~~~g~---------~pd~~t~~~ll~a~~--~~~~~~~a~~i~~~~ 354 (868)
.+.. +.+..+++++.++++..... .|-..++..++..|+ ..|+++.+.+.+..+
T Consensus 185 ~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 185 EALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4443 33455666666666532221 223344555555553 344544555444433
No 303
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=81.04 E-value=1.8 Score=44.03 Aligned_cols=80 Identities=20% Similarity=0.125 Sum_probs=65.2
Q ss_pred HhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhH
Q 047992 645 DLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDA 722 (868)
Q Consensus 645 d~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 722 (868)
.-|.++|+++||++.+.+. ...| |++.+..-..||.+.+.+..|+.-.+.++.|+-...-+|.-.+..-.+.|+.+||
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4466789999999998765 6667 7788888888999999999999999999999887777777766666777777777
Q ss_pred HH
Q 047992 723 LK 724 (868)
Q Consensus 723 ~~ 724 (868)
.+
T Consensus 185 Kk 186 (536)
T KOG4648|consen 185 KK 186 (536)
T ss_pred HH
Confidence 65
No 304
>PRK10941 hypothetical protein; Provisional
Probab=80.96 E-value=4.3 Score=41.27 Aligned_cols=59 Identities=25% Similarity=0.176 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 671 IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 671 ~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
..+.|-.++...++++.|.++.+.++.+.|+++.-+--.+-+|+..|.|..|..=.+.-
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~f 241 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYF 241 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 35667778889999999999999999999999999999999999999999999865544
No 305
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=80.83 E-value=39 Score=29.81 Aligned_cols=64 Identities=14% Similarity=0.119 Sum_probs=35.5
Q ss_pred eHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCC
Q 047992 295 TWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGF 359 (868)
Q Consensus 295 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~ 359 (868)
.....+..+.++|.-++-.++++++.. +-.+++.....+..||.+.|+..++.+++..+-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344455566666666666666666643 3345666666666777777777777776666666653
No 306
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.83 E-value=1.2e+02 Score=35.32 Aligned_cols=74 Identities=14% Similarity=0.052 Sum_probs=38.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCcc---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcC
Q 047992 231 SGYFQIGENDEAHRLFDKMCREEIKL---GVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNG 307 (868)
Q Consensus 231 ~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 307 (868)
.-+.+.+.+++|+++.+... |..| ....+...|..+.-.|++++|-...-.|... +..-|.-.+..+...+
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence 33455566666666554332 2223 2345555666666666666666666555544 4444444444444444
Q ss_pred Chh
Q 047992 308 RTS 310 (868)
Q Consensus 308 ~~~ 310 (868)
+..
T Consensus 438 ~l~ 440 (846)
T KOG2066|consen 438 QLT 440 (846)
T ss_pred ccc
Confidence 433
No 307
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=80.30 E-value=2.7 Score=26.77 Aligned_cols=31 Identities=29% Similarity=0.567 Sum_probs=22.6
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN 600 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 600 (868)
.|..+...|...|++++|++.|++..+ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 356677778888888888888888877 5564
No 308
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=79.80 E-value=11 Score=40.49 Aligned_cols=126 Identities=17% Similarity=0.135 Sum_probs=88.2
Q ss_pred cCChHHH-HHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHH
Q 047992 579 HGFWHAA-LDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAM 657 (868)
Q Consensus 579 ~g~~~~A-~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~ 657 (868)
.|+...| .++|.-+....-.|+.+...+++ .+|.|.++.+.+.+..... -+.....+..|+..-+-..|++++|.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHH
Confidence 4554444 35666666666678877666655 6788999999988887665 34455567788888888999999999
Q ss_pred HHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC-CchhHHHH
Q 047992 658 EFIEDM---PIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPG-DVLIQRLI 709 (868)
Q Consensus 658 ~~i~~~---~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~-~~~~~~~l 709 (868)
..-..| .++ ++.+.....+..+..|-++++.-.+++++.++|. +++.-..|
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~ 432 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFL 432 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeee
Confidence 998888 232 3333334445567778899999999999999875 44443333
No 309
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.76 E-value=12 Score=41.54 Aligned_cols=149 Identities=15% Similarity=0.085 Sum_probs=93.9
Q ss_pred cCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 047992 205 CGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRM 284 (868)
Q Consensus 205 ~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 284 (868)
.|+++.|..++..++.+ .-+.++.-+.+.|..++|+++-. |.. .-.....+.|+++.|.++..+.
T Consensus 599 rrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s~---------D~d---~rFelal~lgrl~iA~~la~e~ 663 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELST---------DPD---QRFELALKLGRLDIAFDLAVEA 663 (794)
T ss_pred hccccccccccccCchh---hhhhHHhHhhhccchHhhhhcCC---------Chh---hhhhhhhhcCcHHHHHHHHHhh
Confidence 46777777766666632 33445555666677777765531 111 1122344678888887776665
Q ss_pred HhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCcc
Q 047992 285 ESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVL 364 (868)
Q Consensus 285 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 364 (868)
. +..-|..|..+..+.+++..|.+.|....+ |..++-.+...|+.+....+-....+.|.
T Consensus 664 ~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~----- 723 (794)
T KOG0276|consen 664 N------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK----- 723 (794)
T ss_pred c------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-----
Confidence 4 667789999999999999999998877643 45566666667776655555555555552
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhc
Q 047992 365 VGNSLINMYSKCEELEAAERVFDMI 389 (868)
Q Consensus 365 ~~~~li~~y~~~g~~~~A~~vf~~~ 389 (868)
.|....+|...|+++++.+++..-
T Consensus 724 -~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 -NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred -cchHHHHHHHcCCHHHHHHHHHhc
Confidence 233334566677777777766543
No 310
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=79.75 E-value=3.7 Score=25.00 Aligned_cols=31 Identities=26% Similarity=0.263 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 047992 671 IWEALLTACRIHGNIDLAVLAIERLFDLEPG 701 (868)
Q Consensus 671 ~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 701 (868)
+|..+...+...|+.+.|...++++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4566666777788888888888888888775
No 311
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=79.64 E-value=96 Score=33.53 Aligned_cols=80 Identities=10% Similarity=0.156 Sum_probs=62.7
Q ss_pred CCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHH
Q 047992 189 SCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKD---GVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILI 265 (868)
Q Consensus 189 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li 265 (868)
+.|...|-.||.-|...|..+..++++++|..|- ...|...|++=....++.....+|.+.....+. ...|..-+
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~--ldLW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN--LDLWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc--HhHHHHHH
Confidence 4567788999999999999999999999998873 447999999888888999999999888776444 55565555
Q ss_pred HHHHh
Q 047992 266 RSYNQ 270 (868)
Q Consensus 266 ~~~~~ 270 (868)
.-.-+
T Consensus 117 ~YIRr 121 (660)
T COG5107 117 EYIRR 121 (660)
T ss_pred HHHHh
Confidence 54444
No 312
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.48 E-value=31 Score=31.22 Aligned_cols=85 Identities=9% Similarity=0.049 Sum_probs=50.0
Q ss_pred cCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 047992 614 AGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEP-DSSIWEALLTACRIHGNIDLAVLAI 692 (868)
Q Consensus 614 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~ 692 (868)
.++.+++..++..|.--..-.|....+ -+.++.+.|+++||..++++..-.+ ....-.+|+.-|..-..-..=...+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~--dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr~~A 100 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMF--DGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWHVHA 100 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchh--HHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHHHHH
Confidence 566666666666665433333333333 3456678889999999988884433 4455566777776544334445555
Q ss_pred HHHhccCC
Q 047992 693 ERLFDLEP 700 (868)
Q Consensus 693 ~~~~~l~p 700 (868)
..+++-++
T Consensus 101 ~~~le~~~ 108 (153)
T TIGR02561 101 DEVLARDA 108 (153)
T ss_pred HHHHHhCC
Confidence 55665544
No 313
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=78.97 E-value=33 Score=32.60 Aligned_cols=61 Identities=16% Similarity=0.154 Sum_probs=39.4
Q ss_pred HhhhhcCChHHHHHHHHhC-CCCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHhccCCCCchhHH
Q 047992 645 DLYGRSGKLEEAMEFIEDM-PIEPDSSIWEALL---TACRIHGNIDLAVLAIERLFDLEPGDVLIQR 707 (868)
Q Consensus 645 d~l~r~g~~~eA~~~i~~~-~~~p~~~~w~~ll---~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~ 707 (868)
-++.+.++++.|++-..+. .+.|. .-.+|. -+|-....++.|..-++++++++|..-.+--
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~pt--y~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~ 206 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELNPT--YEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREARE 206 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcCch--hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHH
Confidence 3455667777776666554 33342 223333 3456667889999999999999997654443
No 314
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=78.84 E-value=14 Score=35.05 Aligned_cols=58 Identities=16% Similarity=0.241 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCc------eecHHHHHHHHhcCChHHHHHHHHHHHH
Q 047992 537 VMNSLIDTYAKSGNIVYSRTIFDGMSSKDI------ITWNSLICGYVLHGFWHAALDLFDQMKS 594 (868)
Q Consensus 537 ~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~------~~~~~li~~~~~~g~~~~A~~l~~~m~~ 594 (868)
.+..+.+.|.+.|+++.|.+.|.++.+..+ ..+-.+|......|++..+.....+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 466788899999999999999998876432 2456667777778888888877777655
No 315
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.54 E-value=23 Score=36.38 Aligned_cols=146 Identities=10% Similarity=0.069 Sum_probs=80.2
Q ss_pred cCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHH----HHHHHHHHhcCCHHH
Q 047992 478 LGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVM----NSLIDTYAKSGNIVY 553 (868)
Q Consensus 478 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~Li~~y~k~g~~~~ 553 (868)
+|+..+|...++++.+ ..+.|...+.-.=.+|...|....-+...+.++.. -.+|.+.| ..+.-.+..||-+++
T Consensus 116 ~g~~h~a~~~wdklL~-d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLD-DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHH-hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 3444444444444433 23444444445555566666655555555555442 13344333 334444568999999
Q ss_pred HHHHHhcCCCCCc-eec--HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHhhccCChHHHHHHHHH
Q 047992 554 SRTIFDGMSSKDI-ITW--NSLICGYVLHGFWHAALDLFDQMKSFGLKPN----RGTFLSIILAHSLAGMVDLGKKVFCS 626 (868)
Q Consensus 554 A~~~f~~~~~~d~-~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~ 626 (868)
|.+.-++..+-|. .+| -+....+-.+|+.+++.+...+-... -+-. ...|-...-.+...+.++.|+.+|+.
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 9999887765433 245 44566677889999998876553221 1100 01122222234456888888888874
No 316
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.47 E-value=52 Score=31.34 Aligned_cols=115 Identities=12% Similarity=0.072 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHH--HHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHH-----HhhhhcCChHHH
Q 047992 584 AALDLFDQMKSFGLKPNRGTFLS--IILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMI-----DLYGRSGKLEEA 656 (868)
Q Consensus 584 ~A~~l~~~m~~~g~~p~~~t~~~--ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv-----d~l~r~g~~~eA 656 (868)
+.....+++....-+....++.+ +..+....|.+++|...++.... .|.-+.+..++ .++...|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 44445555555322222222222 23356677888888887776543 24444455444 456678999999
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 047992 657 MEFIEDMPIEPD--SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDV 703 (868)
Q Consensus 657 ~~~i~~~~~~p~--~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 703 (868)
.+.++... .++ +..-..-..++...||-+.|+..++++++.+++++
T Consensus 146 L~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 146 LKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 99998752 222 11222234567789999999999999999886543
No 317
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=78.44 E-value=8.9 Score=38.97 Aligned_cols=61 Identities=21% Similarity=0.334 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 671 IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 671 ~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
+...+..++...|+.+.+....+++++++|-+...|..|...|...|+...|...++.++.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3445666666777788888888888888888888888888888888888888887766654
No 318
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=78.02 E-value=30 Score=37.04 Aligned_cols=179 Identities=12% Similarity=0.148 Sum_probs=103.3
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC--CceecHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC-HHHHH---HHHHHhh
Q 047992 542 IDTYAKSGNIVYSRTIFDGMSSK--DIITWNSLICGYVLHGFWHAALDLFDQMKSFG---LKPN-RGTFL---SIILAHS 612 (868)
Q Consensus 542 i~~y~k~g~~~~A~~~f~~~~~~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~-~~t~~---~ll~a~~ 612 (868)
+.+.-+.|+++.-.+........ +...+.++... +.|+.+++....+++...- +.+. ...+. ..+.-+-
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq 82 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNEDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQ 82 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCCChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 45667889999877777766543 33344444333 7889998888888776531 1110 01111 1122222
Q ss_pred ccCChHHHHHHHHHhhh---------------hcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCC-CCCCHHHHHHHH
Q 047992 613 LAGMVDLGKKVFCSITE---------------CYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMP-IEPDSSIWEALL 676 (868)
Q Consensus 613 ~~g~~~~a~~~~~~m~~---------------~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~-~~p~~~~w~~ll 676 (868)
....++++.++...... -....++...+..++..= .-+++.+. ......+|..+.
T Consensus 83 ~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R---------~~~l~~~~~~~~~~~~~l~~a 153 (352)
T PF02259_consen 83 QLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLR---------RLVLSLILLPEELAETWLKFA 153 (352)
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH---------HHHHhcccchhHHHHHHHHHH
Confidence 33445555555522110 001122222222222110 00011111 123344899999
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCC----CchhHHHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 677 TACRIHGNIDLAVLAIERLFDLEPG----DVLIQRLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 677 ~a~~~~~~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
..||.+|+++.|..++.++.+.++. .+...+.-+++....|+-++|....+....
T Consensus 154 ~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 154 KLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999987632 456677789999999999999996655554
No 319
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=77.70 E-value=2.9 Score=25.04 Aligned_cols=24 Identities=13% Similarity=0.248 Sum_probs=19.6
Q ss_pred hhHHHHHHHHhhcCCChhHHHHHH
Q 047992 704 LIQRLILQIYAICGKPEDALKVRK 727 (868)
Q Consensus 704 ~~~~~l~~~y~~~g~~~~a~~~~~ 727 (868)
.+...|+.+|...|++++|..+.+
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456788999999999999987653
No 320
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=76.74 E-value=27 Score=28.99 Aligned_cols=61 Identities=16% Similarity=0.258 Sum_probs=46.5
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 047992 543 DTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLS 606 (868)
Q Consensus 543 ~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 606 (868)
..+...|++++|..+.+....||+.+|-++- -.+.|...++..-+.+|...| .|...+|..
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALC--EWRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHH--HHhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 3456789999999999999999999998774 356788888888888887765 455555543
No 321
>PF15161 Neuropep_like: Neuropeptide-like
Probab=76.22 E-value=1 Score=31.87 Aligned_cols=18 Identities=28% Similarity=0.669 Sum_probs=12.9
Q ss_pred cccccCCcchhhhHHHHhh
Q 047992 823 KNIRMCVHCHETAKYVSMM 841 (868)
Q Consensus 823 knlr~c~dch~~~k~~s~~ 841 (868)
---|-|.|||.|- |+-+.
T Consensus 11 aesRPCVDCHAFe-fmqRA 28 (65)
T PF15161_consen 11 AESRPCVDCHAFE-FMQRA 28 (65)
T ss_pred CCCCCchhhHHHH-HHHHH
Confidence 3468999999875 65543
No 322
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=75.62 E-value=4 Score=26.39 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=15.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHH
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSR 555 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~ 555 (868)
+...++.|...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 5666777777777777777664
No 323
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=75.50 E-value=13 Score=38.41 Aligned_cols=128 Identities=15% Similarity=0.125 Sum_probs=59.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHhhccCChHHHHHHHHHh---hhhcCCCCChhHHHHH
Q 047992 572 LICGYVLHGFWHAALDLFDQMKSFGLKP-N----RGTFLSIILAHSLAGMVDLGKKVFCSI---TECYQIIPMIEHYSAM 643 (868)
Q Consensus 572 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~----~~t~~~ll~a~~~~g~~~~a~~~~~~m---~~~~~~~p~~~~y~~l 643 (868)
|..+..-.+.++++++-|+...+---.. | -..+.++-+-+....+.+++.-+.... ...+++..-..-|-+|
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 3334444455666666666655421111 1 134556666666666666666555432 2333433322233333
Q ss_pred H-----HhhhhcCChHHHHHHHHhC-------CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 047992 644 I-----DLYGRSGKLEEAMEFIEDM-------PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFDLE 699 (868)
Q Consensus 644 v-----d~l~r~g~~~eA~~~i~~~-------~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~ 699 (868)
+ -.|-..|++-+|.+.-++. ...|-.. ....+...||..||.|.|..-||.+...-
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 2 2233344444443333322 2222211 33445556666666666666666665543
No 324
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=74.85 E-value=17 Score=35.54 Aligned_cols=80 Identities=14% Similarity=0.122 Sum_probs=62.4
Q ss_pred CChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHH
Q 047992 651 GKLEEAMEFIEDM-PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKL 728 (868)
Q Consensus 651 g~~~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 728 (868)
.++++|.+-+.+. .+.|... .|..=.-.+.+.++.+..+.--.++++++|+..-.+..|++.......+++|.++...
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 3445555544444 4677775 4555555556788999999999999999999999999999999999999999998765
Q ss_pred HH
Q 047992 729 ER 730 (868)
Q Consensus 729 m~ 730 (868)
--
T Consensus 104 a~ 105 (284)
T KOG4642|consen 104 AY 105 (284)
T ss_pred HH
Confidence 53
No 325
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.79 E-value=21 Score=36.32 Aligned_cols=48 Identities=21% Similarity=0.317 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047992 274 CDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSF 321 (868)
Q Consensus 274 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 321 (868)
.++++.++..=.+.|+-||-.+++.+|+.+.+++++.+|..+...|..
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 334455554445555555555555555555555555555555554443
No 326
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=74.79 E-value=1.4e+02 Score=32.98 Aligned_cols=171 Identities=15% Similarity=0.156 Sum_probs=110.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Q 047992 125 WSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVK 204 (868)
Q Consensus 125 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 204 (868)
.-+++..+..+..+.-+..+..+|..-| -+...|..+++.+... ..+.--.++.++++..+ .|++....|...|-+
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~yEk 144 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKYEK 144 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHHHH
Confidence 3456777777777777777888887643 4566777888888777 34555667777777665 355555667776666
Q ss_pred cCChHHHHHHHhhcCCC------Ch---hhHHHHHHHHHhcCChhHHHHHHHHHHH-cCCccChhhHHHHHHHHHhcCCh
Q 047992 205 CGKLIWARRFFESMDEK------DG---VAWNSMISGYFQIGENDEAHRLFDKMCR-EEIKLGVVTFNILIRSYNQLGQC 274 (868)
Q Consensus 205 ~g~~~~A~~~f~~~~~~------d~---~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~~~~~li~~~~~~g~~ 274 (868)
++.+.+..+|..+..+ +. ..|..++..- ..+.+..+++...... .|...-...+.-+-.-|....++
T Consensus 145 -ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~ 221 (711)
T COG1747 145 -IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENW 221 (711)
T ss_pred -hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCH
Confidence 7777777777665322 11 1466555422 2355666666665543 34445556666677788889999
Q ss_pred HHHHHHHHHHHhcCCCCCeeeHHHHHHHH
Q 047992 275 DVAMEMVKRMESLGITPDVFTWTCMISGF 303 (868)
Q Consensus 275 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 303 (868)
++|++++..+.+..-+ |..+-..++..+
T Consensus 222 ~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 222 TEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred HHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 9999999988876444 555555555544
No 327
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.27 E-value=2.1e+02 Score=34.58 Aligned_cols=115 Identities=11% Similarity=0.183 Sum_probs=62.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcC---CccChhhHHHHHHHHHhcCCh--HHHHHHHHHHHhcCCCCCeeeHHH-
Q 047992 225 AWNSMISGYFQIGENDEAHRLFDKMCREE---IKLGVVTFNILIRSYNQLGQC--DVAMEMVKRMESLGITPDVFTWTC- 298 (868)
Q Consensus 225 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~~~~~- 298 (868)
-|..|+..|...|+.++|++++.+....- -.--...+..++...-+.+.. +-+++.-+...+..+.-....+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 48889999999999999999999887632 111112233345555555544 445555454444433322222222
Q ss_pred -----------HHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHh
Q 047992 299 -----------MISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACT 339 (868)
Q Consensus 299 -----------li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 339 (868)
.+-.|......+-+..+++.+....-.++..-.+.++..|.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 23344555555566666666655444445444444444443
No 328
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=74.22 E-value=3.1e+02 Score=36.66 Aligned_cols=61 Identities=16% Similarity=0.076 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 670 SIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 670 ~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
.+|-.....+|..|.++.|..+.-++.+..+ +..++-.+......|+-..|..+.+.--+.
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3899999999999999999999988888874 688999999999999999999987765543
No 329
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=74.16 E-value=23 Score=33.16 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHhccCCCCchhHHHH
Q 047992 684 NIDLAVLAIERLFDLEPGDVLIQRLI 709 (868)
Q Consensus 684 ~~~~a~~~~~~~~~l~p~~~~~~~~l 709 (868)
.+++|...++++.+.+|+|..+...|
T Consensus 95 ~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 95 YFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 36778888999999999987665555
No 330
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.76 E-value=2.3 Score=43.62 Aligned_cols=50 Identities=12% Similarity=0.010 Sum_probs=23.6
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHH
Q 047992 679 CRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKL 728 (868)
Q Consensus 679 ~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 728 (868)
+...+....|++-+..+++++|+.+..|-.-+......|.|++|.+....
T Consensus 158 ~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~ 207 (377)
T KOG1308|consen 158 FLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLAL 207 (377)
T ss_pred eeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHH
Confidence 33444444444444444555555444444444444444555554444333
No 331
>PRK09687 putative lyase; Provisional
Probab=73.66 E-value=1.2e+02 Score=31.42 Aligned_cols=60 Identities=7% Similarity=-0.035 Sum_probs=30.9
Q ss_pred CCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhHh
Q 047992 360 TDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQE 422 (868)
Q Consensus 360 ~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 422 (868)
.++..+-...+.++++.|+.+....+.+.+..++ ..-..+.++...|.. +|+..+.++..
T Consensus 203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 4455556666666666666444444444444333 223445555555553 45555555554
No 332
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=73.00 E-value=17 Score=34.77 Aligned_cols=70 Identities=16% Similarity=0.188 Sum_probs=49.9
Q ss_pred HHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC----CchhHHHHHHHHhhcCCChhHH
Q 047992 654 EEAMEFIEDMPIEP--DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPG----DVLIQRLILQIYAICGKPEDAL 723 (868)
Q Consensus 654 ~eA~~~i~~~~~~p--~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~~a~ 723 (868)
++|...|-++.-.| +..-....|+.+....|.+.+...+-+++++.+. |+..+..|+.+|...|+.+.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 45555555552222 3344455666777789999999999999987654 4788889999999999988774
No 333
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.71 E-value=82 Score=30.96 Aligned_cols=108 Identities=16% Similarity=0.087 Sum_probs=52.2
Q ss_pred CCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcC----CCCChhHHHHHHHhhhhc-CChHHHHHHHHhCC-----C
Q 047992 596 GLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQ----IIPMIEHYSAMIDLYGRS-GKLEEAMEFIEDMP-----I 665 (868)
Q Consensus 596 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----~~p~~~~y~~lvd~l~r~-g~~~eA~~~i~~~~-----~ 665 (868)
|-+.|..|-..-..-|.+.+++++|...++..++-|- ..-...|+-.+.++|..- .+++.|+..+++.. -
T Consensus 68 ~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e 147 (288)
T KOG1586|consen 68 GSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE 147 (288)
T ss_pred CCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch
Confidence 3344443322233334455566666655554433221 111223344455555443 55666666666551 1
Q ss_pred CCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHhccCCCCc
Q 047992 666 EPDSSIWEALLTAC---RIHGNIDLAVLAIERLFDLEPGDV 703 (868)
Q Consensus 666 ~p~~~~w~~ll~a~---~~~~~~~~a~~~~~~~~~l~p~~~ 703 (868)
+.+...-..+|..- ...+++..|..+++++-.-.-+|+
T Consensus 148 es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 148 ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 22233333333321 345778888888888876555543
No 334
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=72.56 E-value=1.3e+02 Score=31.58 Aligned_cols=13 Identities=46% Similarity=0.836 Sum_probs=10.1
Q ss_pred ccCCcchhhhHHHHhh
Q 047992 826 RMCVHCHETAKYVSMM 841 (868)
Q Consensus 826 r~c~dch~~~k~~s~~ 841 (868)
|-|..|. |++|.+
T Consensus 406 rsCP~Cr---klrSs~ 418 (518)
T KOG1941|consen 406 RSCPNCR---KLRSSM 418 (518)
T ss_pred CCCccHH---HHHhhc
Confidence 7899998 777743
No 335
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=72.22 E-value=99 Score=30.01 Aligned_cols=126 Identities=12% Similarity=0.022 Sum_probs=67.2
Q ss_pred HHHhHHhhHHHHhccCCCCcchHHHHHHHHhCCChhHHHHHHHHHhhcCCCCCcccHHHHHHHHhccCChHHHHHHHHHh
Q 047992 4 WILTTFQQLHSLLTKKSNPRFRDTHLDFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFL 83 (868)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~ 83 (868)
|-+-+.+.-.++--.+--|++||.+.--+...|+++.|.+.|+...+.+..-+-...+.-|.-+ --|+++.|.+-+...
T Consensus 81 ~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~f 159 (297)
T COG4785 81 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAF 159 (297)
T ss_pred HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHH
Confidence 4444444444443334455689999999999999999999999888775433322333333222 236777776655544
Q ss_pred hhcCCCCh--hhhhHHHHHHHhcCChhHHHH-HHhhcCCCCceeHHHHHHHHH
Q 047992 84 NLVTEIDV--FVKTKLLSVYAKCGCLDDARE-VFEDMRERNLYTWSAMIGAYS 133 (868)
Q Consensus 84 ~~~~~~~~--~~~~~li~~~~~~g~~~~A~~-~f~~~~~~~~~~~~~li~~~~ 133 (868)
-..-+.|+ .++--|+. ..-++.+|.. +.+.....|-.-|..-|-.|.
T Consensus 160 YQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~y 209 (297)
T COG4785 160 YQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFY 209 (297)
T ss_pred HhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHH
Confidence 11122233 22322222 2234555554 333444445455655555443
No 336
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=72.18 E-value=8 Score=25.89 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=10.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 047992 672 WEALLTACRIHGNIDLAVLAIERLF 696 (868)
Q Consensus 672 w~~ll~a~~~~~~~~~a~~~~~~~~ 696 (868)
++.|...+...|+++.|+..+++++
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHH
Confidence 3444444444444444444444444
No 337
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=71.74 E-value=6.2 Score=24.74 Aligned_cols=27 Identities=26% Similarity=0.285 Sum_probs=17.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCC
Q 047992 675 LLTACRIHGNIDLAVLAIERLFDLEPG 701 (868)
Q Consensus 675 ll~a~~~~~~~~~a~~~~~~~~~l~p~ 701 (868)
+..++...|+.+.|...++++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444555667777777777777777665
No 338
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.69 E-value=1.1e+02 Score=30.33 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=27.8
Q ss_pred chHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047992 193 RVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMC 250 (868)
Q Consensus 193 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 250 (868)
..++.-..+|..+|.++-|-..++... -...+-++++|+++|.+-.
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAa------------k~lenv~Pd~AlqlYqral 137 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAA------------KALENVKPDDALQLYQRAL 137 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHH------------HHhhcCCHHHHHHHHHHHH
Confidence 345666777888887776665555421 1234456677777776644
No 339
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.35 E-value=64 Score=37.13 Aligned_cols=88 Identities=15% Similarity=0.066 Sum_probs=53.9
Q ss_pred ChHHHHHHHHhCC--CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc-CCChhHHHHH
Q 047992 652 KLEEAMEFIEDMP--IEPDSSIWEALLTACR--IHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAIC-GKPEDALKVR 726 (868)
Q Consensus 652 ~~~eA~~~i~~~~--~~p~~~~w~~ll~a~~--~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~-g~~~~a~~~~ 726 (868)
+...|.+++.... -.++...|-++...+- ...|.+.|...+.++-+.+ ++.+...++..|.-. ++++.+.-.+
T Consensus 343 d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~ 420 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALY 420 (552)
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHH
Confidence 3456666666552 2233333333332222 3457888888888888887 455566666655544 8888888888
Q ss_pred HHHHhcCCCCCCccc
Q 047992 727 KLERENTRRNSFGQC 741 (868)
Q Consensus 727 ~~m~~~~~~k~~g~s 741 (868)
..+++.|.+-.-..+
T Consensus 421 ~~~a~~g~~~~q~~a 435 (552)
T KOG1550|consen 421 LYLAELGYEVAQSNA 435 (552)
T ss_pred HHHHHhhhhHHhhHH
Confidence 888887765444433
No 340
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=71.18 E-value=38 Score=32.15 Aligned_cols=16 Identities=19% Similarity=0.246 Sum_probs=11.0
Q ss_pred HhcCChhHHHHHHHHH
Q 047992 304 AQNGRTSQALDLFKEM 319 (868)
Q Consensus 304 ~~~g~~~~A~~l~~~m 319 (868)
...+++.+|-+.|-+.
T Consensus 124 l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 124 LAQRDFKEAAELFLDS 139 (177)
T ss_pred HHhchHHHHHHHHHcc
Confidence 3467788887777655
No 341
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=70.97 E-value=4.6 Score=25.72 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=16.6
Q ss_pred cHHHHHHHHhcCChHHHHHHHHHHHH
Q 047992 569 WNSLICGYVLHGFWHAALDLFDQMKS 594 (868)
Q Consensus 569 ~~~li~~~~~~g~~~~A~~l~~~m~~ 594 (868)
|..+...|.+.|+.++|++.|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45555666666666666666666655
No 342
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=70.70 E-value=6.3 Score=26.40 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=18.7
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHH
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKS 594 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 594 (868)
+++.+...|...|++++|++++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 456677777777777777777777654
No 343
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=70.41 E-value=58 Score=33.01 Aligned_cols=57 Identities=23% Similarity=0.381 Sum_probs=35.9
Q ss_pred hhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHh
Q 047992 433 NVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKM 491 (868)
Q Consensus 433 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 491 (868)
+.....|..+|.+.+|.++.+....-. +.+...|-.++..+...|+--.|...++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld--pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD--PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344456667777777777777766544 455566666666777666665555555554
No 344
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=70.31 E-value=8.1 Score=23.04 Aligned_cols=22 Identities=9% Similarity=0.076 Sum_probs=15.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHh
Q 047992 538 MNSLIDTYAKSGNIVYSRTIFD 559 (868)
Q Consensus 538 ~~~Li~~y~k~g~~~~A~~~f~ 559 (868)
...|...+...|++++|.++++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4456677777777777777765
No 345
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=69.62 E-value=12 Score=37.85 Aligned_cols=63 Identities=22% Similarity=0.276 Sum_probs=48.4
Q ss_pred hhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHH
Q 047992 647 YGRSGKLEEAMEFIEDM-PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLI 709 (868)
Q Consensus 647 l~r~g~~~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l 709 (868)
..+.|+.|+|..+|+.+ .+.|+.. +..-+..-.-.|+++-+|-+.+-+++.++|.|+.+.+.-
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR 190 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNR 190 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence 34789999999999876 5556544 444444445567899999999999999999999887653
No 346
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=69.24 E-value=30 Score=28.61 Aligned_cols=62 Identities=11% Similarity=0.118 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 047992 582 WHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMID 645 (868)
Q Consensus 582 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd 645 (868)
.-++.+-++.+....+-|+.....+.|.||.+.+++.-|.++|+..+.+-+. +...|-.+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 3455566667777778999999999999999999999999999988865443 4446666654
No 347
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=69.19 E-value=33 Score=28.52 Aligned_cols=77 Identities=16% Similarity=0.070 Sum_probs=52.4
Q ss_pred hHHHHHHHHHh-hhcCCCChhhhhHHHHHHHhcCChhHHHHHHhhcCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHC
Q 047992 73 IHLARKLHAFL-NLVTEIDVFVKTKLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELFFLMVQD 151 (868)
Q Consensus 73 ~~~a~~i~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 151 (868)
-++|..|-+.+ ..+-. ...+.-.-++.+...|++++|..+.+..+.||...|-+|-.+ +.|....+..-+.+|-.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 45566666655 32221 222222334466788999999999999999999999888764 566667777777777766
Q ss_pred C
Q 047992 152 G 152 (868)
Q Consensus 152 g 152 (868)
|
T Consensus 98 g 98 (115)
T TIGR02508 98 G 98 (115)
T ss_pred C
Confidence 5
No 348
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=69.14 E-value=19 Score=39.80 Aligned_cols=126 Identities=14% Similarity=0.064 Sum_probs=84.2
Q ss_pred HHHHHHHHhcCCCCCceecHHHH--HHH-HhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCChHHHHHHHH
Q 047992 551 IVYSRTIFDGMSSKDIITWNSLI--CGY-VLHGFWHAALDLFDQMKSFGLKPNR--GTFLSIILAHSLAGMVDLGKKVFC 625 (868)
Q Consensus 551 ~~~A~~~f~~~~~~d~~~~~~li--~~~-~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~ 625 (868)
-+-|..+|-.|..++..-|-++- ..| ...|+...|+..+..... .+|-. +..+.+.....|.|++-+|-.++.
T Consensus 589 ~e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~--~~p~~~~v~~v~la~~~~~~~~~~da~~~l~ 666 (886)
T KOG4507|consen 589 EEIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALN--LAPLQQDVPLVNLANLLIHYGLHLDATKLLL 666 (886)
T ss_pred HHHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhc--cChhhhcccHHHHHHHHHHhhhhccHHHHHH
Confidence 45677778888877766665442 223 246888888888887766 55643 556666666666666666655555
Q ss_pred HhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh
Q 047992 626 SITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLI 705 (868)
Q Consensus 626 ~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 705 (868)
+...- . ...+.+.-++..++...+|++.|.++++.+++++|+++..
T Consensus 667 q~l~~-----------------------------~-----~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~ 712 (886)
T KOG4507|consen 667 QALAI-----------------------------N-----SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPEC 712 (886)
T ss_pred HHHhh-----------------------------c-----ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhh
Confidence 43321 1 1223345567778888899999999999999999999877
Q ss_pred HHHHHHH
Q 047992 706 QRLILQI 712 (868)
Q Consensus 706 ~~~l~~~ 712 (868)
-..|-.|
T Consensus 713 ~~~l~~i 719 (886)
T KOG4507|consen 713 ENSLKLI 719 (886)
T ss_pred HHHHHHH
Confidence 6666544
No 349
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=68.49 E-value=11 Score=35.35 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 047992 685 IDLAVLAIERLFDLEPGDVLIQRLILQIYAICGK 718 (868)
Q Consensus 685 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 718 (868)
++.|..-+++++.++|+...++..|+|.|...|.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 5667777888899999999999999999998875
No 350
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.02 E-value=65 Score=36.11 Aligned_cols=101 Identities=20% Similarity=0.188 Sum_probs=63.0
Q ss_pred HhcCChhHHHHHHhhcCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHH
Q 047992 102 AKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHS 181 (868)
Q Consensus 102 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 181 (868)
.+.|+++.|..+..+. .+..-|..|-.+....|++..|.+.|.+... |.+|+-.+...|+-+....+-.
T Consensus 648 l~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred hhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHH
Confidence 4566777776655443 3445677777777777777777777766542 4455556666666555555555
Q ss_pred HHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcC
Q 047992 182 LVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMD 219 (868)
Q Consensus 182 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 219 (868)
...+.|.. |...-+|...|+++++..++.+-.
T Consensus 717 ~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 717 LAKKQGKN------NLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHhhccc------chHHHHHHHcCCHHHHHHHHHhcC
Confidence 55555533 222335667788888888877653
No 351
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.54 E-value=29 Score=35.35 Aligned_cols=104 Identities=12% Similarity=0.076 Sum_probs=64.1
Q ss_pred CCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCC--CCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHH
Q 047992 424 DVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDK--VKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCV 501 (868)
Q Consensus 424 g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 501 (868)
|.+.+..+...++..-....+++++...+-++..... ..|+. +-.+.++. +-.-++++++.++..=..-|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irl-llky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHH-HHccChHHHHHHHhCcchhccccchh
Confidence 4445566666666666666677777777766643211 00111 11112222 22335667777777777778888888
Q ss_pred hHHHHHHHHhchhchHHHHHHHHHHHHh
Q 047992 502 TILSVLPACAYLVASNKVKEIHGCVLRR 529 (868)
Q Consensus 502 t~~~ll~a~~~~~~~~~~~~i~~~~~~~ 529 (868)
|++.+++.+.+.++...+.++...++..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888777777766553
No 352
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=67.15 E-value=1.8e+02 Score=31.85 Aligned_cols=95 Identities=20% Similarity=0.117 Sum_probs=68.2
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC---------C---CceecHHHHHHHHhcCChHHHHHHHHHHHH-------CCCCCCH-
Q 047992 542 IDTYAKSGNIVYSRTIFDGMSS---------K---DIITWNSLICGYVLHGFWHAALDLFDQMKS-------FGLKPNR- 601 (868)
Q Consensus 542 i~~y~k~g~~~~A~~~f~~~~~---------~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~-------~g~~p~~- 601 (868)
.+.+.-.|+...|.+++....- | .-+.||.|.....+.|.+..+..+|.+.++ .|++|..
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 3556678999999999875431 1 335689998888888888888887777763 5666643
Q ss_pred ----------HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCCh
Q 047992 602 ----------GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMI 637 (868)
Q Consensus 602 ----------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 637 (868)
++|+ ..-.+.|.|+.-.|.+.|....+.|.-.|..
T Consensus 327 ~tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~vfh~nPrl 371 (696)
T KOG2471|consen 327 FTLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHVFHRNPRL 371 (696)
T ss_pred eehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHHHhcCcHH
Confidence 2222 2235678899999999998888888777765
No 353
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=67.10 E-value=66 Score=34.59 Aligned_cols=64 Identities=19% Similarity=0.184 Sum_probs=48.2
Q ss_pred CHHHHHHH---HHHHHhcCCHHHHHHHHHHHhccCCC-CchhHHHHHHHHh-hcCCChhHHHHHHHHHh
Q 047992 668 DSSIWEAL---LTACRIHGNIDLAVLAIERLFDLEPG-DVLIQRLILQIYA-ICGKPEDALKVRKLERE 731 (868)
Q Consensus 668 ~~~~w~~l---l~a~~~~~~~~~a~~~~~~~~~l~p~-~~~~~~~l~~~y~-~~g~~~~a~~~~~~m~~ 731 (868)
|-..|.+| +....+.|-+.-|.+.++-++.+||. ||-.-.+..+.|+ ++++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44455554 34556789999999999999999999 8877777778777 56777777777666544
No 354
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=66.61 E-value=2.6e+02 Score=32.70 Aligned_cols=100 Identities=13% Similarity=0.067 Sum_probs=57.1
Q ss_pred ChhhHHHHHHHHH-hcCChhHHHHHHHHHHHcCCccChh-----hHHHHHHHHHhcCChHHHHHHHHHHHhcCCC----C
Q 047992 222 DGVAWNSMISGYF-QIGENDEAHRLFDKMCREEIKLGVV-----TFNILIRSYNQLGQCDVAMEMVKRMESLGIT----P 291 (868)
Q Consensus 222 d~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p 291 (868)
+..+.--+...+. ...+.++|...+.+.....-+++.. ....++..|.+.+... |....++..+.--. +
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 4445555666655 4677888888888765433223222 2234566677777666 88888876553111 1
Q ss_pred CeeeHHHH-HHHHHhcCChhHHHHHHHHHHhC
Q 047992 292 DVFTWTCM-ISGFAQNGRTSQALDLFKEMSFV 322 (868)
Q Consensus 292 ~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~ 322 (868)
-...+.-+ +..+...+++..|++.++.+...
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~ 168 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQL 168 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 12222233 22333347888888888887643
No 355
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=65.92 E-value=13 Score=24.47 Aligned_cols=32 Identities=19% Similarity=0.068 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHH--HHHHhccCCCC
Q 047992 671 IWEALLTACRIHGNIDLAVLA--IERLFDLEPGD 702 (868)
Q Consensus 671 ~w~~ll~a~~~~~~~~~a~~~--~~~~~~l~p~~ 702 (868)
-|-++...+...|+++.|+.. ++-+..++|.|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 466777788889999999999 55888888764
No 356
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=65.49 E-value=22 Score=38.53 Aligned_cols=108 Identities=18% Similarity=0.233 Sum_probs=57.9
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhc---CCh
Q 047992 577 VLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRS---GKL 653 (868)
Q Consensus 577 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~---g~~ 653 (868)
...|++.+|++.|+..+.. ..+..-......+++.++.....+ | ..+..+.+--|. ...
T Consensus 215 ~t~gKF~eA~~~Fr~iL~~----------i~l~vv~~~~E~~e~~eli~icrE-Y-------ilgl~iEl~Rr~l~~~~~ 276 (422)
T PF06957_consen 215 FTAGKFEEAIEIFRSILHS----------IPLLVVESREEEDEAKELIEICRE-Y-------ILGLSIELERRELPKDPV 276 (422)
T ss_dssp HHTT-HHHHHHHHHHHHHH----------HHC--BSSCHHHHHHHHHHHHHHH-H-------HHHHHHHHHHCTS-TTTH
T ss_pred HhcCCHHHHHHHHHHHHHH----------hheeeecCHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHhccccch
Confidence 3567888888888877651 111122222334555555554443 1 112222222222 122
Q ss_pred HH------HHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 047992 654 EE------AMEFIEDMPIEPDSS--IWEALLTACRIHGNIDLAVLAIERLFDLEPGD 702 (868)
Q Consensus 654 ~e------A~~~i~~~~~~p~~~--~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 702 (868)
++ --.+|....++|.+. ++++-++.+.+++|+.-|-..+++++++.|..
T Consensus 277 ~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 277 EDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred hhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 22 223344446777655 67778888899999999999999999999854
No 357
>PHA02875 ankyrin repeat protein; Provisional
Probab=64.50 E-value=1.2e+02 Score=33.30 Aligned_cols=20 Identities=15% Similarity=0.110 Sum_probs=11.3
Q ss_pred HHHHHHHcCChHHHHHHHhh
Q 047992 198 VLAVYVKCGKLIWARRFFES 217 (868)
Q Consensus 198 li~~y~~~g~~~~A~~~f~~ 217 (868)
.+...++.|+.+.+..+++.
T Consensus 71 ~L~~A~~~g~~~~v~~Ll~~ 90 (413)
T PHA02875 71 ELHDAVEEGDVKAVEELLDL 90 (413)
T ss_pred HHHHHHHCCCHHHHHHHHHc
Confidence 34445566666666666554
No 358
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=64.02 E-value=43 Score=28.07 Aligned_cols=60 Identities=12% Similarity=0.126 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 047992 584 AALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMID 645 (868)
Q Consensus 584 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd 645 (868)
+..+-++.+....+-|+.....+.|.||.+.+++.-|.++|+.++.+-+.. .+.|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 455556666677789999999999999999999999999999998865533 446777664
No 359
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.61 E-value=1.6e+02 Score=29.10 Aligned_cols=98 Identities=12% Similarity=0.208 Sum_probs=56.4
Q ss_pred ChHHHHHHHHHhhhhcCCC-CChhHHHHHH---HhhhhcCChHHHHHHHHhC---CCCCCHHHHHH---HH--HHHHhc-
Q 047992 616 MVDLGKKVFCSITECYQII-PMIEHYSAMI---DLYGRSGKLEEAMEFIEDM---PIEPDSSIWEA---LL--TACRIH- 682 (868)
Q Consensus 616 ~~~~a~~~~~~m~~~~~~~-p~~~~y~~lv---d~l~r~g~~~eA~~~i~~~---~~~p~~~~w~~---ll--~a~~~~- 682 (868)
+.++|+.+|+..-+-|... .+...--|++ +.-+..|++.+|++++++. .+..+..-|.. ++ +.|...
T Consensus 129 d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~ 208 (288)
T KOG1586|consen 129 DFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCK 208 (288)
T ss_pred HHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhc
Confidence 4455555555554433222 2222233443 3445667888898888776 33333333332 33 336555
Q ss_pred CCHHHHHHHHHHHhccCCCC--chhHHHHHHHH
Q 047992 683 GNIDLAVLAIERLFDLEPGD--VLIQRLILQIY 713 (868)
Q Consensus 683 ~~~~~a~~~~~~~~~l~p~~--~~~~~~l~~~y 713 (868)
.|.=.+.++.++-.+++|.- +.-+-+|..+.
T Consensus 209 ~D~v~a~~ALeky~~~dP~F~dsREckflk~L~ 241 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPAFTDSRECKFLKDLL 241 (288)
T ss_pred ccHHHHHHHHHHHHhcCCcccccHHHHHHHHHH
Confidence 78888999999999999964 44445555443
No 360
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.26 E-value=2.5e+02 Score=32.40 Aligned_cols=83 Identities=13% Similarity=0.073 Sum_probs=46.4
Q ss_pred hhHHHHHHHHhHhCCCCCCeeehhhHHHH-----HHhcCCHHHHHHHHHhcccC---CCCCCCeeehhhhHHHHHhcC--
Q 047992 410 CGKAYELFIKMQESDVPPNVITWNVLISG-----YIQNGNEDEAVDLFQRMGKN---DKVKRNTASWNSLIAGYQQLG-- 479 (868)
Q Consensus 410 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~-----~~~~g~~~~A~~~f~~m~~~---~~~~~~~~~~~~li~~~~~~g-- 479 (868)
...|.+.++...+.| +...-..+..+ +....+.+.|+.+|+.+.+. ....-+......+...|.+..
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 456777777777666 33333333332 34556788888888877541 001113445556666666643
Q ss_pred ---ChhHHHHHHHHhhcCC
Q 047992 480 ---QKNNALGVFRKMQSSC 495 (868)
Q Consensus 480 ---~~~~A~~~~~~m~~~g 495 (868)
+.+.|+.++.+.-..|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g 323 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG 323 (552)
T ss_pred ccccHHHHHHHHHHHHhcC
Confidence 3445666666655544
No 361
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=63.14 E-value=75 Score=26.12 Aligned_cols=75 Identities=17% Similarity=0.166 Sum_probs=51.1
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--CchhHHHHHHHHhhcCCCh-hHHHHHHHHH
Q 047992 654 EEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPG--DVLIQRLILQIYAICGKPE-DALKVRKLER 730 (868)
Q Consensus 654 ~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~--~~~~~~~l~~~y~~~g~~~-~a~~~~~~m~ 730 (868)
+...+-+..-| .|....-.|...+...|+++.|...+-.+++.+|+ +..+-..|..++...|.-+ -+.+.|++|-
T Consensus 9 ~al~~~~a~~P--~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~ 86 (90)
T PF14561_consen 9 AALEAALAANP--DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLA 86 (90)
T ss_dssp HHHHHHHHHST--T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHcCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 33344444432 24456777888888999999999999999998875 4777888888888888854 6677777763
No 362
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=62.24 E-value=51 Score=31.64 Aligned_cols=74 Identities=12% Similarity=0.014 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhc--CCCCChhHHHHHHHhhhhcCChHHHH
Q 047992 583 HAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECY--QIIPMIEHYSAMIDLYGRSGKLEEAM 657 (868)
Q Consensus 583 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~--~~~p~~~~y~~lvd~l~r~g~~~eA~ 657 (868)
++|++.|-++...+.--+ ...-..|..+.-..+.+++++++....+-+ +-.++++.+..|+.++.+.|++++|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t-~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELET-AELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 456666666655443323 222223333333556666666665554432 22455666666666666666666654
No 363
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=61.08 E-value=6.8 Score=24.56 Aligned_cols=28 Identities=11% Similarity=0.058 Sum_probs=23.8
Q ss_pred hHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 705 IQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 705 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
++..++.+|...|++++|.+..+.+.++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4678999999999999999988877543
No 364
>PHA02875 ankyrin repeat protein; Provisional
Probab=60.51 E-value=1.9e+02 Score=31.69 Aligned_cols=17 Identities=12% Similarity=0.257 Sum_probs=7.9
Q ss_pred HHHHcCCCHHHHHHHHH
Q 047992 371 NMYSKCEELEAAERVFD 387 (868)
Q Consensus 371 ~~y~~~g~~~~A~~vf~ 387 (868)
...+..|+.+-+..+++
T Consensus 140 h~A~~~~~~~~v~~Ll~ 156 (413)
T PHA02875 140 HLAVMMGDIKGIELLID 156 (413)
T ss_pred HHHHHcCCHHHHHHHHh
Confidence 33344555555444444
No 365
>PF13934 ELYS: Nuclear pore complex assembly
Probab=60.51 E-value=92 Score=30.92 Aligned_cols=97 Identities=23% Similarity=0.247 Sum_probs=50.2
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHH
Q 047992 578 LHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAM 657 (868)
Q Consensus 578 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~ 657 (868)
.|+++++|++++-.- .+.|+... -++.+....|..+.|..+++.+... ..+.+.-..+..+ ...|.+.||.
T Consensus 90 D~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p~---l~s~~~~~~~~~~-La~~~v~EAf 160 (226)
T PF13934_consen 90 DHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAVGPP---LSSPEALTLYFVA-LANGLVTEAF 160 (226)
T ss_pred ChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhcCCC---CCCHHHHHHHHHH-HHcCCHHHHH
Confidence 456666666665221 12232221 2455555567777777777654321 1122222333333 3347788888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047992 658 EFIEDMPIEPDSSIWEALLTACRIHG 683 (868)
Q Consensus 658 ~~i~~~~~~p~~~~w~~ll~a~~~~~ 683 (868)
.+.++.+-+-....|..++..|....
T Consensus 161 ~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 161 SFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 88777644222346777777666444
No 366
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=60.31 E-value=70 Score=34.89 Aligned_cols=207 Identities=14% Similarity=0.075 Sum_probs=111.4
Q ss_pred hchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHH--HHHhc-----------CCCCC----ceecHHHHHHH
Q 047992 514 VASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSR--TIFDG-----------MSSKD----IITWNSLICGY 576 (868)
Q Consensus 514 ~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~--~~f~~-----------~~~~d----~~~~~~li~~~ 576 (868)
+.++...+....+...|.....+.+|.-+..|.|.|...... +-.+. +...| .+.+..-..+|
T Consensus 31 ~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~aVi~ 110 (696)
T KOG2471|consen 31 SEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFAVIF 110 (696)
T ss_pred cchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhheee
Confidence 445555555555656555555555666566666665532211 11111 11111 12233333455
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHhhccCChHHHHHHHHHhhh---hcCCCCChhHHHHHHHhh
Q 047992 577 VLHGFWHAALDLFDQMKSFGLKPNR------GTFLSIILAHSLAGMVDLGKKVFCSITE---CYQIIPMIEHYSAMIDLY 647 (868)
Q Consensus 577 ~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~ll~a~~~~g~~~~a~~~~~~m~~---~~~~~p~~~~y~~lvd~l 647 (868)
..+..+.+|+++-...... +.|-. +|+..++ .+....+.++|+.+++-+.+ .-...|
T Consensus 111 yh~~~~g~a~~~~~~lv~r-~e~le~~~aa~v~~l~~~-l~~~t~q~e~al~~l~vL~~~~~~~~~~~------------ 176 (696)
T KOG2471|consen 111 YHHEENGSAMQLSSNLVSR-TESLESSSAASVTLLSDL-LAAETSQCEEALDYLNVLAEIEAEKRMKL------------ 176 (696)
T ss_pred eeHhhcchHHHhhhhHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhccc------------
Confidence 5667777888776665543 33322 3333332 23344566777776654433 212222
Q ss_pred hhcCChHHHHHHHHhCC-C---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 047992 648 GRSGKLEEAMEFIEDMP-I---------EPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICG 717 (868)
Q Consensus 648 ~r~g~~~eA~~~i~~~~-~---------~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 717 (868)
.|+-.++-.+.+..+ - .|...+-.--..++....++..+.+-.+.+.-+.-+.+.+..+-++.|...|
T Consensus 177 --~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~g 254 (696)
T KOG2471|consen 177 --VGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHG 254 (696)
T ss_pred --cccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhc
Confidence 233334444444332 0 1111122222334556678888888888888888888888888899999999
Q ss_pred CChhHHHHHHHHHhcCCCCCCc
Q 047992 718 KPEDALKVRKLERENTRRNSFG 739 (868)
Q Consensus 718 ~~~~a~~~~~~m~~~~~~k~~g 739 (868)
++..|.++.- ..++.|+||
T Consensus 255 n~~kA~KlL~---~sni~~~~g 273 (696)
T KOG2471|consen 255 NHPKAMKLLL---VSNIHKEAG 273 (696)
T ss_pred chHHHHHHHH---hcccccccC
Confidence 9999988643 345666665
No 367
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=60.19 E-value=6.4 Score=42.46 Aligned_cols=81 Identities=14% Similarity=0.068 Sum_probs=51.4
Q ss_pred hhhcCChHHHHHHHHhC-CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHH
Q 047992 647 YGRSGKLEEAMEFIEDM-PIEPDSSIWEAL-LTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALK 724 (868)
Q Consensus 647 l~r~g~~~eA~~~i~~~-~~~p~~~~w~~l-l~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 724 (868)
....+.++.|.+++.++ ..+||.+++-+. ..|..+.+++..|..-+.+++|++|...-.|+.-+..+.+.+++.+|..
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence 33455566666666555 556655533333 2556666777777777777777777777777777777777777777666
Q ss_pred HHH
Q 047992 725 VRK 727 (868)
Q Consensus 725 ~~~ 727 (868)
..+
T Consensus 94 ~l~ 96 (476)
T KOG0376|consen 94 DLE 96 (476)
T ss_pred HHH
Confidence 543
No 368
>PRK11619 lytic murein transglycosylase; Provisional
Probab=60.16 E-value=3.4e+02 Score=31.88 Aligned_cols=135 Identities=9% Similarity=-0.003 Sum_probs=74.5
Q ss_pred HHhCCChhHHHHHHHHHhhcCCCCCcccHHHHHHHHhccCChHHHHHHHHHh-h-hcCCCChhhhhHHHHHHHhcCChhH
Q 047992 32 LCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFL-N-LVTEIDVFVKTKLLSVYAKCGCLDD 109 (868)
Q Consensus 32 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~-~-~~~~~~~~~~~~li~~~~~~g~~~~ 109 (868)
..+.|++.++..+..++...... .-..|..+...+ .....+ ++-..+ + .+.+....+-..-+..+++.+++..
T Consensus 43 a~~~g~~~~~~~~~~~l~d~pL~-~yl~y~~L~~~l-~~~~~~---ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~ 117 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKDYPLY-PYLEYRQLTQDL-MNQPAV---QVTNFIRANPTLPPARSLQSRFVNELARREDWRG 117 (644)
T ss_pred HHHCCCHHHHHHHHHhccCCCcH-hHHHHHHHHhcc-ccCCHH---HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHH
Confidence 45677777776666665322110 111222222222 112333 344444 2 2233344555666667778888888
Q ss_pred HHHHHhhcCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCCh
Q 047992 110 AREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDF 173 (868)
Q Consensus 110 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 173 (868)
-.. |..-+..+...-.....+....|+.++|......+-..|.. .+.....+++.+...|.+
T Consensus 118 ~~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 118 LLA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred HHH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCC
Confidence 777 44333344444556677788889988888888887666533 345666666666644443
No 369
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=59.15 E-value=48 Score=32.67 Aligned_cols=86 Identities=15% Similarity=0.102 Sum_probs=59.2
Q ss_pred HHhhhhcCChHHHHHHHHhC---------CCCCCHHHHHHH--------HHHH---HhcCCHHHHHHHHHHHhccCCCCc
Q 047992 644 IDLYGRSGKLEEAMEFIEDM---------PIEPDSSIWEAL--------LTAC---RIHGNIDLAVLAIERLFDLEPGDV 703 (868)
Q Consensus 644 vd~l~r~g~~~eA~~~i~~~---------~~~p~~~~w~~l--------l~a~---~~~~~~~~a~~~~~~~~~l~p~~~ 703 (868)
.+-+.+.|+++||..-+..+ .-+|...-|--| ++-| .+.|++-.++.....++..+|.|.
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence 34455677777776655443 234544444332 2222 356888889999999999999999
Q ss_pred hhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 704 LIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 704 ~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
.+|.--+...+..-+-++|..-.+..
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~v 290 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKV 290 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 99999999888877777777654443
No 370
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=58.65 E-value=30 Score=33.40 Aligned_cols=67 Identities=18% Similarity=0.219 Sum_probs=47.4
Q ss_pred HHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHH
Q 047992 643 MIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLI 709 (868)
Q Consensus 643 lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l 709 (868)
.+.-|.+.+++.||+...+.- .-+|. ...-..|...++..|+.++|..-.+-+-+++|++..-..+.
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~ly 75 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLY 75 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHH
Confidence 355677788888888876654 44554 33556677778888888888888888888888765444333
No 371
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=58.38 E-value=66 Score=28.63 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=27.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHH
Q 047992 675 LLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRL 708 (868)
Q Consensus 675 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~ 708 (868)
|.-+|.+.|+++.+.+..+.+++.+|+|..+..+
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 5556788899999999999999999987654433
No 372
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=58.30 E-value=16 Score=22.55 Aligned_cols=29 Identities=24% Similarity=0.221 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHhccCCCCchhHHHHHH
Q 047992 683 GNIDLAVLAIERLFDLEPGDVLIQRLILQ 711 (868)
Q Consensus 683 ~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 711 (868)
|+.+.+..+++++++..|.++..+.....
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 56788889999999888888877776654
No 373
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=57.20 E-value=1.2e+02 Score=33.02 Aligned_cols=120 Identities=12% Similarity=0.013 Sum_probs=61.3
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHh--hccCChHHHHHHHHHhhhhcCC-CCChhHHHHHHHhhhhcC
Q 047992 577 VLHGFWHAALDLFDQMKSFGLKPNRG--TFLSIILAH--SLAGMVDLGKKVFCSITECYQI-IPMIEHYSAMIDLYGRSG 651 (868)
Q Consensus 577 ~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~--~~~g~~~~a~~~~~~m~~~~~~-~p~~~~y~~lvd~l~r~g 651 (868)
..++++..|.++|+++.+. +.++.. .+..+..+| ....+.++|.++|+........ .-...+...++..+....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 220 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVLKALE 220 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHH
Confidence 3677788888888888776 555543 222232333 3456677888888776553111 111233344443333333
Q ss_pred ChHHHHHHHHhCCCCCCHH-HHHHHHHHHH--hcCCHHHHHHHHHHHhc
Q 047992 652 KLEEAMEFIEDMPIEPDSS-IWEALLTACR--IHGNIDLAVLAIERLFD 697 (868)
Q Consensus 652 ~~~eA~~~i~~~~~~p~~~-~w~~ll~a~~--~~~~~~~a~~~~~~~~~ 697 (868)
.+..+.+....-+-++... +..-+.+|-| ..|+++.|.--+-+++|
T Consensus 221 ~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lE 269 (379)
T PF09670_consen 221 SILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALE 269 (379)
T ss_pred hhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3333222222222122222 4444455555 36888888777666665
No 374
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=56.61 E-value=69 Score=32.66 Aligned_cols=97 Identities=16% Similarity=0.186 Sum_probs=63.6
Q ss_pred CCCcchHHHHHHHHh-CC-ChhHHHHHHHHHhh-cCCCCCcccHHHHHHHHhccCChHHHHHHHHHh--hhcCCCChhhh
Q 047992 20 SNPRFRDTHLDFLCG-NG-RLNEAITVLDSIAT-QGAKVRRNTYINLLQACIDSNSIHLARKLHAFL--NLVTEIDVFVK 94 (868)
Q Consensus 20 ~~~~~~~~ll~~~~~-~g-~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~--~~~~~~~~~~~ 94 (868)
.++.+-..+|+.... .+ .+..-.++.+-+.. .+..++..+...+++.++..+++....++.... ..++..|...+
T Consensus 162 ~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW 241 (292)
T PF13929_consen 162 FDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPW 241 (292)
T ss_pred eChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchH
Confidence 344455555555544 12 22222333333332 245667778888888888888888888887776 44677788888
Q ss_pred hHHHHHHHhcCChhHHHHHHhh
Q 047992 95 TKLLSVYAKCGCLDDAREVFED 116 (868)
Q Consensus 95 ~~li~~~~~~g~~~~A~~~f~~ 116 (868)
..+|..-.+.|+..-.+.+.++
T Consensus 242 ~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 242 AEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHHHcCCHHHHHHHhhC
Confidence 8888888888888888777765
No 375
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.04 E-value=2.9e+02 Score=29.73 Aligned_cols=180 Identities=17% Similarity=0.301 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC-ceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047992 537 VMNSLIDTYAKSGNIVYSRTIFDGMSS-----KD-IITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILA 610 (868)
Q Consensus 537 ~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~d-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 610 (868)
...-|.+-|..||+++.|.+.+.+..+ +. +..|-.+|..-.-.|++......-.+..+ .|+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s---t~~~--------- 219 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES---TPDA--------- 219 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh---Cchh---------
Confidence 356688899999999999999998542 12 22454455555556666666666555554 2211
Q ss_pred hhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCC---------CCCCHH-HHHHHHHHHH
Q 047992 611 HSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMP---------IEPDSS-IWEALLTACR 680 (868)
Q Consensus 611 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~---------~~p~~~-~w~~ll~a~~ 680 (868)
+.+... .+.+....+..++.+..+ +++.|.+.+-..+ +.|..+ +++ .|.|..
T Consensus 220 -------------~~~~~q--~v~~kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYg-gLcALA 281 (466)
T KOG0686|consen 220 -------------NENLAQ--EVPAKLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYG-GLCALA 281 (466)
T ss_pred -------------hhhHHH--hcCcchHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHH-hhHhhc
Confidence 122222 345667777777777665 6666666554442 234333 444 333333
Q ss_pred hc--CCHH---HHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCCCcccEEEEcCEEEEEEeC
Q 047992 681 IH--GNID---LAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRRNSFGQCWIEVKNLVYTFVTG 755 (868)
Q Consensus 681 ~~--~~~~---~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~ 755 (868)
.. .++. ..-..++.+++++|+ ...+|..-|. +++.--.++.+.++.+= ...
T Consensus 282 tfdr~~Lk~~vi~n~~Fk~flel~Pq---lr~il~~fy~--sky~~cl~~L~~~k~~l-------------------lLD 337 (466)
T KOG0686|consen 282 TFDRQDLKLNVIKNESFKLFLELEPQ---LREILFKFYS--SKYASCLELLREIKPRL-------------------LLD 337 (466)
T ss_pred cCCHHHHHHHHHcchhhhhHHhcChH---HHHHHHHHhh--hhHHHHHHHHHHhccce-------------------eec
Confidence 22 3333 233457788999984 4445555543 45555555555443221 111
Q ss_pred CCCCCchHHHHHHHH
Q 047992 756 GWSESYSDLLYSWLQ 770 (868)
Q Consensus 756 d~~hp~~~~i~~~l~ 770 (868)
---+|+...+|.++.
T Consensus 338 ~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 338 MYLAPHVDNLYSLIR 352 (466)
T ss_pred hhcchhHHHHHHHHH
Confidence 235899999999988
No 376
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=55.99 E-value=2.1e+02 Score=28.19 Aligned_cols=91 Identities=23% Similarity=0.304 Sum_probs=41.8
Q ss_pred cHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHH--HHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHH---
Q 047992 569 WNSLICGYVLHGFWHAALDLFDQMKSFGLKPN---RGTF--LSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHY--- 640 (868)
Q Consensus 569 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~--~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y--- 640 (868)
.|.||.-|..+..+.+|.+.|.+ +.|+.|. ..+. ..-+......|++++|....++...+ -+.-+.+.+
T Consensus 29 ~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~L 105 (228)
T KOG2659|consen 29 LNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFHL 105 (228)
T ss_pred HHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHHH
Confidence 34444444444444444444433 2334441 1111 12233335556666666555554332 111121111
Q ss_pred --HHHHHhhhhcCChHHHHHHHHhC
Q 047992 641 --SAMIDLYGRSGKLEEAMEFIEDM 663 (868)
Q Consensus 641 --~~lvd~l~r~g~~~eA~~~i~~~ 663 (868)
-.++. +.|+|..++|.++.+.-
T Consensus 106 q~q~lIE-liR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 106 QQLHLIE-LIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHHHHH-HHHhhhHHHHHHHHHHH
Confidence 11222 45888889999888763
No 377
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=55.77 E-value=4.7 Score=37.96 Aligned_cols=6 Identities=67% Similarity=2.040 Sum_probs=5.6
Q ss_pred CCCCCC
Q 047992 863 SCGDYW 868 (868)
Q Consensus 863 sc~d~w 868 (868)
+|||||
T Consensus 221 hc~d~w 226 (235)
T KOG4718|consen 221 HCGDLW 226 (235)
T ss_pred chhccc
Confidence 899999
No 378
>PF15469 Sec5: Exocyst complex component Sec5
Probab=55.22 E-value=1.1e+02 Score=29.08 Aligned_cols=88 Identities=16% Similarity=0.216 Sum_probs=51.2
Q ss_pred HHHHHhhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047992 606 SIILAHSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGN 684 (868)
Q Consensus 606 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~ 684 (868)
.-|.-|...|+++.+...|......++-.. ....+. .-+.|..+.+++.. ..+|..|.... ..
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~---------~v~~eve~ii~~~r----~~l~~~L~~~~---~s 154 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQ---------KVWSEVEKIIEEFR----EKLWEKLLSPP---SS 154 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHH---------HHHHHHHHHHHHHH----HHHHHHHhCCC---CC
Confidence 455667777888888877776665433222 111111 12344444444431 22444444332 67
Q ss_pred HHHHHHHHHHHhccCCCCchhHHHH
Q 047992 685 IDLAVLAIERLFDLEPGDVLIQRLI 709 (868)
Q Consensus 685 ~~~a~~~~~~~~~l~p~~~~~~~~l 709 (868)
.+......+.+++|+|+..+++..|
T Consensus 155 ~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 155 QEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 7888888899999998776666554
No 379
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=54.66 E-value=18 Score=29.72 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=33.9
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 689 VLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 689 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
...+++.++.+|+|..+-..|+..|...|++++|.+..-.+
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~ 48 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLEL 48 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 45678889999999999999999999999999999965444
No 380
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=54.16 E-value=1e+02 Score=29.05 Aligned_cols=37 Identities=24% Similarity=0.462 Sum_probs=28.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 047992 675 LLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQI 712 (868)
Q Consensus 675 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 712 (868)
....|...|++++|+++++++++ +|++...-..|..|
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~I 153 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMI 153 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHH
Confidence 45679999999999999999999 88776554444433
No 381
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=53.90 E-value=1.5e+02 Score=34.39 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=19.8
Q ss_pred CCcchHHHHHHHHhCCChhHHHHHHHHH
Q 047992 21 NPRFRDTHLDFLCGNGRLNEAITVLDSI 48 (868)
Q Consensus 21 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m 48 (868)
+|++|+ .+..+.-.|.+++|..++...
T Consensus 148 ~p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 148 DPDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp SHHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred chhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 367888 677788889999999988444
No 382
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.65 E-value=2.6e+02 Score=30.02 Aligned_cols=165 Identities=16% Similarity=0.143 Sum_probs=87.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCC------CeehHHHHHHHHHhcCChhHHHHHHHHhHhCC---------CCCCe
Q 047992 365 VGNSLINMYSKCEELEAAERVFDMIKDK------DVYSWNSMIAGYCQAGYCGKAYELFIKMQESD---------VPPNV 429 (868)
Q Consensus 365 ~~~~li~~y~~~g~~~~A~~vf~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------~~p~~ 429 (868)
...-+.+-|..||+++.|.+.+.+..+= -+-.|-.+|..-...|++......-.+..+.- +++-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 3556788899999999999999886541 22245555666566666666555555544321 11111
Q ss_pred eehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHH
Q 047992 430 ITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPA 509 (868)
Q Consensus 430 ~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 509 (868)
..+..|.... .+.+..|.+.|-...... .-|. .=+.|..++....|.|
T Consensus 232 ~C~agLa~L~--lkkyk~aa~~fL~~~~~~------~d~~------------------------~ivtpsdv~iYggLcA 279 (466)
T KOG0686|consen 232 KCAAGLANLL--LKKYKSAAKYFLLAEFDH------CDYP------------------------EIVTPSDVAIYGGLCA 279 (466)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHhCCCCc------cCcc------------------------ceecchhhHHHHhhHh
Confidence 1222222222 224455544444332111 0000 1145666666667777
Q ss_pred HhchhchHHHHHHHHH-HHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 047992 510 CAYLVASNKVKEIHGC-VLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSS 563 (868)
Q Consensus 510 ~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~ 563 (868)
.+..+.-+.-.++... ..+.-++..+.+...|...|. +++....++++++.+
T Consensus 280 LAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr~il~~fy~--sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 280 LATFDRQDLKLNVIKNESFKLFLELEPQLREILFKFYS--SKYASCLELLREIKP 332 (466)
T ss_pred hccCCHHHHHHHHHcchhhhhHHhcChHHHHHHHHHhh--hhHHHHHHHHHHhcc
Confidence 6665554444333222 122334456666666666664 567777777777654
No 383
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=53.12 E-value=26 Score=34.11 Aligned_cols=57 Identities=28% Similarity=0.429 Sum_probs=45.5
Q ss_pred hhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 047992 646 LYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGD 702 (868)
Q Consensus 646 ~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 702 (868)
++...|+-+-|-+++++. ...| ....|--+..---+.|+++.|.+++++.++++|++
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345678888888888887 3334 45588888777788999999999999999999976
No 384
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=52.98 E-value=1.4e+02 Score=27.16 Aligned_cols=81 Identities=10% Similarity=0.103 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcC-----CCCCeeeHHHHHHHHHhcCC-hhHHHHHHHHHHhCCccCCcccHHHH
Q 047992 261 FNILIRSYNQLGQCDVAMEMVKRMESLG-----ITPDVFTWTCMISGFAQNGR-TSQALDLFKEMSFVGVMPNGVTITSA 334 (868)
Q Consensus 261 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~t~~~l 334 (868)
.|.++.-.+..+...-...+++.+.... -..+..+|.+++.+..+..- ---+..+|.-|.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3455555555555555555554442211 01255667777777755555 34556667777666677777777777
Q ss_pred HHHHhch
Q 047992 335 ISACTDL 341 (868)
Q Consensus 335 l~a~~~~ 341 (868)
+++|.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7776553
No 385
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=52.39 E-value=19 Score=21.44 Aligned_cols=27 Identities=19% Similarity=0.318 Sum_probs=17.2
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHH
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKS 594 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 594 (868)
.|..+...+...|+.++|...|++.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 345556666666777777777666654
No 386
>PF13934 ELYS: Nuclear pore complex assembly
Probab=51.26 E-value=2.2e+02 Score=28.20 Aligned_cols=114 Identities=11% Similarity=0.157 Sum_probs=68.0
Q ss_pred cCCHHHHHHHHhcCCCCCceec--HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHH
Q 047992 548 SGNIVYSRTIFDGMSSKDIITW--NSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFC 625 (868)
Q Consensus 548 ~g~~~~A~~~f~~~~~~d~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 625 (868)
.++++.|.+.+-. |.+..| .-++.++...|+.+.|+..++.+.-....++..+ .++.+ ...|.+.||+.+-+
T Consensus 91 ~~~~~~A~~~L~~---ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~--~~~~~-La~~~v~EAf~~~R 164 (226)
T PF13934_consen 91 HGDFEEALELLSH---PSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALT--LYFVA-LANGLVTEAFSFQR 164 (226)
T ss_pred hHhHHHHHHHhCC---CCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHH--HHHHH-HHcCCHHHHHHHHH
Confidence 3677777777743 333232 3478888889999999999887543322222222 22223 45589999999887
Q ss_pred HhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHH
Q 047992 626 SITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSI 671 (868)
Q Consensus 626 ~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~ 671 (868)
+..+.- ....+.+++..+.....-....+.+-.+|+.+...-
T Consensus 165 ~~~~~~----~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~EE~ 206 (226)
T PF13934_consen 165 SYPDEL----RRRLFEQLLEHCLEECARSGRLDELLSLPLDEEEEQ 206 (226)
T ss_pred hCchhh----hHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHHHH
Confidence 765421 134566666665543333344555556687766553
No 387
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=51.18 E-value=1.1e+02 Score=25.95 Aligned_cols=85 Identities=14% Similarity=0.135 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHC
Q 047992 516 SNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSF 595 (868)
Q Consensus 516 ~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 595 (868)
.++|..|.+.+...+- ..-.+.-.-+..+.+.|++++|...=.....||.++|-++- -.+.|..+++...+.++...
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLASS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHhC
Confidence 3444555555444322 12222223334456778888885555555667777776663 34677777777777766554
Q ss_pred CCCCCHHHH
Q 047992 596 GLKPNRGTF 604 (868)
Q Consensus 596 g~~p~~~t~ 604 (868)
| .|....|
T Consensus 99 g-~~~~q~F 106 (116)
T PF09477_consen 99 G-SPELQAF 106 (116)
T ss_dssp S-SHHHHHH
T ss_pred C-CHHHHHH
Confidence 3 3333343
No 388
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=51.06 E-value=79 Score=31.07 Aligned_cols=60 Identities=17% Similarity=0.047 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhcCCHHH-------HHHHHHHHhccCCC------CchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 671 IWEALLTACRIHGNIDL-------AVLAIERLFDLEPG------DVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 671 ~w~~ll~a~~~~~~~~~-------a~~~~~~~~~l~p~------~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
++--+.+.||..|+-+. |...++++++.+.. ......+++.++.+.|+.++|.+....+-
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55556666777777444 44444444443321 23566788889999999999988766553
No 389
>PRK11619 lytic murein transglycosylase; Provisional
Probab=50.50 E-value=4.8e+02 Score=30.68 Aligned_cols=125 Identities=9% Similarity=-0.004 Sum_probs=72.9
Q ss_pred CChHHHHHHHHHHHHC-CCCCCHH--HHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHH
Q 047992 580 GFWHAALDLFDQMKSF-GLKPNRG--TFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEA 656 (868)
Q Consensus 580 g~~~~A~~l~~~m~~~-g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA 656 (868)
.+.+.|..++.+.... +..+... ....+.......+..+++...+....... .+.+...--+..-.+.++++.+
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~---~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS---QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc---CCcHHHHHHHHHHHHccCHHHH
Confidence 4568888999887543 3444332 22233222233323667777777544321 2333333344444489999999
Q ss_pred HHHHHhCCCC-CCHHHHHH-HHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHH
Q 047992 657 MEFIEDMPIE-PDSSIWEA-LLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQ 711 (868)
Q Consensus 657 ~~~i~~~~~~-p~~~~w~~-ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 711 (868)
...|..||.. .+..-|.- +..+....|+.+.|...++++-. + .+.|-.|+.
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~--~~fYG~LAa 384 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--Q--RGFYPMVAA 384 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CCcHHHHHH
Confidence 9999998532 12223333 34444558999999999999844 3 357777764
No 390
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=50.03 E-value=35 Score=34.57 Aligned_cols=78 Identities=15% Similarity=0.084 Sum_probs=56.6
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCCCcccEEEEcCEEEEEEeCCCC
Q 047992 679 CRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRRNSFGQCWIEVKNLVYTFVTGGWS 758 (868)
Q Consensus 679 ~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~ 758 (868)
.+..|+.|.|.+.++.++.++|+++....-++.......+.-+|...+- +.+.-.||.|---+ ..++.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~----~ALtisP~nseALv--------nR~RT 193 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYV----KALTISPGNSEALV--------NRART 193 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhh----eeeeeCCCchHHHh--------hhhcc
Confidence 4678999999999999999999999998888877766666666665543 33445676554332 34566
Q ss_pred CCchHHHHHH
Q 047992 759 ESYSDLLYSW 768 (868)
Q Consensus 759 hp~~~~i~~~ 768 (868)
-|...+|-..
T Consensus 194 ~plV~~iD~r 203 (472)
T KOG3824|consen 194 TPLVSAIDRR 203 (472)
T ss_pred chHHHHHHHH
Confidence 7777777653
No 391
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=49.39 E-value=35 Score=28.61 Aligned_cols=59 Identities=14% Similarity=0.075 Sum_probs=50.3
Q ss_pred hhhhhccchHHHHHHHhhcCCCCCCcEEEecccccCCcchhhhHHHHhhhceEEEEecCC
Q 047992 793 EEISGIHSEKLALAFALIGSSQAPHTIRIVKNIRMCVHCHETAKYVSMMHHCEIFLADSK 852 (868)
Q Consensus 793 ~~~~~~hse~la~~~~~~~~~~~~~~~~~~knlr~c~dch~~~k~~s~~~~r~i~~rd~~ 852 (868)
++.|..|.|.-++--=-.+.-+|. .+-|.--++-|..|--+|.-.|.-+|-.|+-++.+
T Consensus 44 ~~slaTHTE~ri~~~l~~~~~~Gd-~m~I~G~ypPC~~CkG~Mr~~s~~~g~~I~Y~w~~ 102 (118)
T PF14427_consen 44 ESSLATHTEARITRDLPLNQVPGD-RMLIDGQYPPCNSCKGKMRRASEKSGATIQYTWPN 102 (118)
T ss_pred hhhhhhhhHhHHHhhcCccccCCc-eEEEeeecCCCchhHHHHHHhhhccCcEEEEecCC
Confidence 457888999888766555555688 89999999999999999999999999999998854
No 392
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.07 E-value=4.1e+02 Score=29.39 Aligned_cols=179 Identities=13% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCC----------ceecHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCC--------HHHHHHHHHHhh
Q 047992 552 VYSRTIFDGMSSKD----------IITWNSLICGYVLHGFWHAALDLFDQMKS-FGLKPN--------RGTFLSIILAHS 612 (868)
Q Consensus 552 ~~A~~~f~~~~~~d----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~--------~~t~~~ll~a~~ 612 (868)
|+|....++.++.| +.....++..-.-.|++.+|++-...|.+ ..-.|. ...-..+.--|.
T Consensus 299 De~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~ 378 (629)
T KOG2300|consen 299 DEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSH 378 (629)
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhh
Q ss_pred ccCChHHHHHHHHHhhhhc-CCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHH--------hc
Q 047992 613 LAGMVDLGKKVFCSITECY-QIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSSIWEALLTACR--------IH 682 (868)
Q Consensus 613 ~~g~~~~a~~~~~~m~~~~-~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~~w~~ll~a~~--------~~ 682 (868)
..|..+.|...|....+.. .+.-....-.-+.-.|.|.|+-++-.++.+.. |...++..=..|-++-. ..
T Consensus 379 sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~q 458 (629)
T KOG2300|consen 379 SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQ 458 (629)
T ss_pred hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHh
Q ss_pred CCHHHHHHHHHHHhccCCC------CchhHHHHHHHHhhcCCChhHHH-HHHHHH
Q 047992 683 GNIDLAVLAIERLFDLEPG------DVLIQRLILQIYAICGKPEDALK-VRKLER 730 (868)
Q Consensus 683 ~~~~~a~~~~~~~~~l~p~------~~~~~~~l~~~y~~~g~~~~a~~-~~~~m~ 730 (868)
+++.+|++...+.+++.-. .+-..++|+++....|+-.|+.+ ||-.|.
T Consensus 459 n~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamq 513 (629)
T KOG2300|consen 459 NDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQ 513 (629)
T ss_pred ccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHH
No 393
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=48.82 E-value=1.5e+02 Score=30.08 Aligned_cols=88 Identities=17% Similarity=0.097 Sum_probs=50.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhh--
Q 047992 573 ICGYVLHGFWHAALDLFDQMKS--FGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYG-- 648 (868)
Q Consensus 573 i~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~-- 648 (868)
|.+++..+++.+++...-+--+ +.+.|...-.-.+ -|++.|......+.-..-.++.+..--. -|..++.+|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCIL--LysKv~Ep~amlev~~~WL~~p~Nq~lp-~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCIL--LYSKVQEPAAMLEVASAWLQDPSNQSLP-EYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHH--HHHHhcCHHHHHHHHHHHHhCcccCCch-hhHHHHHHHHHH
Confidence 6677777777777765444332 1233333222222 3667777777766666555543322222 2766666554
Q ss_pred ---hcCChHHHHHHHHhC
Q 047992 649 ---RSGKLEEAMEFIEDM 663 (868)
Q Consensus 649 ---r~g~~~eA~~~i~~~ 663 (868)
-.|.++||++++..-
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 578899999888654
No 394
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.65 E-value=21 Score=41.45 Aligned_cols=100 Identities=23% Similarity=0.319 Sum_probs=69.4
Q ss_pred HhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047992 610 AHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAV 689 (868)
Q Consensus 610 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~ 689 (868)
-+-+.|-.+-|+.+.+.=... .++...+|+++.|++.-++. .|..+|.-|......+||.+.|+
T Consensus 629 YLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale~akkl---dd~d~w~rLge~Al~qgn~~IaE 692 (1202)
T KOG0292|consen 629 YLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALEAAKKL---DDKDVWERLGEEALRQGNHQIAE 692 (1202)
T ss_pred HHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHHHHHhc---CcHHHHHHHHHHHHHhcchHHHH
Confidence 345566666666655533322 23445689999999998886 56789999999999999999999
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcCCCC
Q 047992 690 LAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRRN 736 (868)
Q Consensus 690 ~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k 736 (868)
..+++.-.. ..|+-+|.-.|+.+ +++|+|+-..+++
T Consensus 693 m~yQ~~knf--------ekLsfLYliTgn~e---KL~Km~~iae~r~ 728 (1202)
T KOG0292|consen 693 MCYQRTKNF--------EKLSFLYLITGNLE---KLSKMMKIAEIRN 728 (1202)
T ss_pred HHHHHhhhh--------hheeEEEEEeCCHH---HHHHHHHHHHhhh
Confidence 999987543 34666677777654 4555555443443
No 395
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=46.85 E-value=2.4e+02 Score=30.35 Aligned_cols=30 Identities=13% Similarity=-0.081 Sum_probs=22.0
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 047992 575 GYVLHGFWHAALDLFDQMKSFGLKPNRGTF 604 (868)
Q Consensus 575 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 604 (868)
.+...+++..|.++|+++.+..+.|+..++
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~ 168 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHTF 168 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhhH
Confidence 345678889999999999887666655443
No 396
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=46.59 E-value=56 Score=23.73 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=26.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047992 571 SLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSII 608 (868)
Q Consensus 571 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 608 (868)
.+.-|+.+.|++++|.+..+.+++ +.|+..-...|-
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHH
Confidence 355678888999999999999988 788876554443
No 397
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=45.78 E-value=97 Score=28.12 Aligned_cols=51 Identities=8% Similarity=0.065 Sum_probs=41.3
Q ss_pred CCceeHHHHHHHHHhCCC-hhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCC
Q 047992 120 RNLYTWSAMIGAYSRDQR-WREVVELFFLMVQDGLFPDDFLFPKILQACGNC 170 (868)
Q Consensus 120 ~~~~~~~~li~~~~~~g~-~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 170 (868)
.+-.+|++++.+.++... ---+..+|.-|.+.+.+++..-|..++++|.+-
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 455689999999877665 345678899998888999999999999998764
No 398
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.49 E-value=3.3e+02 Score=27.37 Aligned_cols=217 Identities=16% Similarity=0.186 Sum_probs=110.9
Q ss_pred hhHHHHHhcCChhHHHHHHHHhhc---CCC--CCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCC-CC----hhHHH
Q 047992 470 SLIAGYQQLGQKNNALGVFRKMQS---SCF--YPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLE-SS----LPVMN 539 (868)
Q Consensus 470 ~li~~~~~~g~~~~A~~~~~~m~~---~g~--~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~-~~----~~~~~ 539 (868)
.+|..+.+.+++++.++.+++|.. ..+ .-+....++++.-.+.....+.-.+.++.-++.--+ .+ -.+-+
T Consensus 70 QmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNt 149 (440)
T KOG1464|consen 70 QMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNT 149 (440)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccc
Confidence 345555555565555555555531 001 123344555555555554554444444433321000 01 12234
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC--------CCc-------eecHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHH
Q 047992 540 SLIDTYAKSGNIVYSRTIFDGMSS--------KDI-------ITWNSLICGYVLHGFWHAALDLFDQMKSFG-LKPNRGT 603 (868)
Q Consensus 540 ~Li~~y~k~g~~~~A~~~f~~~~~--------~d~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t 603 (868)
-|...|...|.+..-.+++.++.. .|. ..|..=|..|....+-.+--.++++.+.-. .-| +..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIP-HPl 228 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIP-HPL 228 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCC-chH
Confidence 466667667777666666665531 111 234445666667777777777888776521 223 334
Q ss_pred HHHHHHHhh-----ccCChHHHHHHHHHhhhhcCCCCChhH-----HHHHHHhhhhcCC----hHHHHHHHHhCCCCCCH
Q 047992 604 FLSIILAHS-----LAGMVDLGKKVFCSITECYQIIPMIEH-----YSAMIDLYGRSGK----LEEAMEFIEDMPIEPDS 669 (868)
Q Consensus 604 ~~~ll~a~~-----~~g~~~~a~~~~~~m~~~~~~~p~~~~-----y~~lvd~l~r~g~----~~eA~~~i~~~~~~p~~ 669 (868)
..+++.-|. +.|.+++|-.-|-..-+.|.-.-++.. |-.+..+|.++|- -.|| -|++.|+
T Consensus 229 ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEA------KPyKNdP 302 (440)
T KOG1464|consen 229 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEA------KPYKNDP 302 (440)
T ss_pred HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCccccc------CCCCCCH
Confidence 567777774 457888877655545444544333333 3444555555551 1111 1444444
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 047992 670 --SIWEALLTACRIHGNIDLAVLAIERLFDL 698 (868)
Q Consensus 670 --~~w~~ll~a~~~~~~~~~a~~~~~~~~~l 698 (868)
.....|..||... ++ ..++++++.
T Consensus 303 EIlAMTnlv~aYQ~N-dI----~eFE~Il~~ 328 (440)
T KOG1464|consen 303 EILAMTNLVAAYQNN-DI----IEFERILKS 328 (440)
T ss_pred HHHHHHHHHHHHhcc-cH----HHHHHHHHh
Confidence 4667778877543 33 335555543
No 399
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=45.48 E-value=3e+02 Score=26.91 Aligned_cols=128 Identities=19% Similarity=0.112 Sum_probs=71.2
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhh-cCCCCChhHHHHHHH
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITEC-YQIIPMIEHYSAMID 645 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~~~~y~~lvd 645 (868)
+.+..|+.+.+.+...+|+.+.++-.+ -+|.. -+-..+..-++-.|++++|..-++...+- -...+....|..+|+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 345556777788888888888877776 45644 44445555667788888887766654431 122333445555544
Q ss_pred hhhhcCChHHHHHH-HHh--CCCCC--CHHHHHH-HHHHHHh--cCCHHHHHHHHHHHhccCCCCch
Q 047992 646 LYGRSGKLEEAMEF-IED--MPIEP--DSSIWEA-LLTACRI--HGNIDLAVLAIERLFDLEPGDVL 704 (868)
Q Consensus 646 ~l~r~g~~~eA~~~-i~~--~~~~p--~~~~w~~-ll~a~~~--~~~~~~a~~~~~~~~~l~p~~~~ 704 (868)
+ +.+..- |.. .|.-+ ....|-. |+.+... -|.-+......|.+++.-|...+
T Consensus 81 ~-------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 81 C-------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred H-------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 3 223222 221 13211 2335544 4444333 34455566677888888876543
No 400
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=44.86 E-value=78 Score=28.63 Aligned_cols=72 Identities=17% Similarity=0.111 Sum_probs=48.7
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHH
Q 047992 652 KLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVR 726 (868)
Q Consensus 652 ~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 726 (868)
.-++|.++++-|.- ....-.........|++..|..+.+.++..+|+|..+-.+.++.|.+.|.-.+...-|
T Consensus 56 p~~~A~~~v~l~GG---~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~~~~R 127 (141)
T PF14863_consen 56 PEEEAKRYVELAGG---ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSENANWR 127 (141)
T ss_dssp HHHHHHHHHHHTTC---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SSHHHH
T ss_pred hHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccCHHHH
Confidence 34567777777632 2222234445567899999999999999999999999999999988877655444433
No 401
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.55 E-value=6.6e+02 Score=30.53 Aligned_cols=124 Identities=18% Similarity=0.088 Sum_probs=60.8
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc--------CChHHHHHH-----HHHhhh-hcCCCC-----
Q 047992 575 GYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLA--------GMVDLGKKV-----FCSITE-CYQIIP----- 635 (868)
Q Consensus 575 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~--------g~~~~a~~~-----~~~m~~-~~~~~p----- 635 (868)
.|......+-++..++.+....-.++..-++.++.-|... +.-+++.+. ...+.+ .....|
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~ 679 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLE 679 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhh
Confidence 4556667777777888877755555555555554433211 111111111 111111 011122
Q ss_pred ---ChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 047992 636 ---MIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQI 712 (868)
Q Consensus 636 ---~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 712 (868)
...-|.-..-+++|.|+-++|..++-. .-+|++.|+.......+-++.+...|..|-.+
T Consensus 680 ~~~~~~l~ee~aill~rl~khe~aL~Iyv~------------------~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~ 741 (877)
T KOG2063|consen 680 RLNGDELYEERAILLGRLGKHEEALHIYVH------------------ELDDIDAAESYCLPQYESDKTNKEIYLTLLRI 741 (877)
T ss_pred hccchhHHHHHHHHHhhhhhHHHHHHHHHH------------------HhcchhHHHHHHHHhccCCCcccHHHHHHHHH
Confidence 222344444456677777777766543 23455666666665556444455555555555
Q ss_pred Hhhc
Q 047992 713 YAIC 716 (868)
Q Consensus 713 y~~~ 716 (868)
|...
T Consensus 742 ~l~~ 745 (877)
T KOG2063|consen 742 YLNP 745 (877)
T ss_pred Hhcc
Confidence 5433
No 402
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.16 E-value=3e+02 Score=26.45 Aligned_cols=88 Identities=11% Similarity=0.109 Sum_probs=50.4
Q ss_pred HHHhccCChHHHHHHHHHh-hhcCC--CChhhhhHHHHHHHhcCChhHHHHHHhhcCCCCceeHHHHH--HHHHhCCChh
Q 047992 65 QACIDSNSIHLARKLHAFL-NLVTE--IDVFVKTKLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMI--GAYSRDQRWR 139 (868)
Q Consensus 65 ~~~~~~~~~~~a~~i~~~~-~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li--~~~~~~g~~~ 139 (868)
+.....++++.|...+... ...-. ....+--.|.+.....|.++.|...++....++-.+--.-+ ..+...|+-.
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 4455667777777665544 11111 11223445556667778888888877776555322211122 2466777777
Q ss_pred HHHHHHHHhHHCC
Q 047992 140 EVVELFFLMVQDG 152 (868)
Q Consensus 140 ~a~~l~~~m~~~g 152 (868)
+|..-|......+
T Consensus 177 ~Ar~ay~kAl~~~ 189 (207)
T COG2976 177 EARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHcc
Confidence 7777777776654
No 403
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=43.94 E-value=1.7e+02 Score=31.85 Aligned_cols=139 Identities=14% Similarity=0.060 Sum_probs=93.6
Q ss_pred cCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047992 614 AGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM--PIEPDSSIWEALLTACRIHGNIDLAVLA 691 (868)
Q Consensus 614 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~--~~~p~~~~w~~ll~a~~~~~~~~~a~~~ 691 (868)
.|++-.|-+-.......+.-.|+... ...-.....|.+|.|...+... .+.....+...++......|..+.|...
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhH--HHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 46655554433334444555555433 3334456789999999999887 3445566777888888888999999999
Q ss_pred HHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCCCcccEEEEcCEEEEEEeCC
Q 047992 692 IERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRRNSFGQCWIEVKNLVYTFVTGG 756 (868)
Q Consensus 692 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d 756 (868)
++-++.-+-+++.....-+-.--+.|-++++...+|..-.-... ...-|+..-.....|-.|.
T Consensus 380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~--~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE--TQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh--hcccceeeeccceeccCcc
Confidence 99999887777766655555555668889999888877544333 3344776656665665554
No 404
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=43.69 E-value=1.9e+02 Score=25.44 Aligned_cols=45 Identities=27% Similarity=0.362 Sum_probs=35.6
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCC
Q 047992 657 MEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFD-LEPG 701 (868)
Q Consensus 657 ~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~-l~p~ 701 (868)
+.-+-.+.+-|++.+..+-|.|||+-+|+..|.+++|-+-. ..++
T Consensus 72 lN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~ 117 (149)
T KOG4077|consen 72 LNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQ 117 (149)
T ss_pred HHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccH
Confidence 33334456789999999999999999999999999998754 4443
No 405
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=43.36 E-value=8 Score=28.00 Aligned_cols=10 Identities=30% Similarity=0.833 Sum_probs=8.0
Q ss_pred cccCCcchhh
Q 047992 825 IRMCVHCHET 834 (868)
Q Consensus 825 lr~c~dch~~ 834 (868)
.-||+|||+-
T Consensus 20 iYiCgdC~~e 29 (62)
T KOG3507|consen 20 IYICGDCGQE 29 (62)
T ss_pred EEEecccccc
Confidence 3689999974
No 406
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=43.08 E-value=1.6e+02 Score=32.98 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=20.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC
Q 047992 539 NSLIDTYAKSGNIVYSRTIFDGMS 562 (868)
Q Consensus 539 ~~Li~~y~k~g~~~~A~~~f~~~~ 562 (868)
..|+.-|.+++++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 357778999999999999999885
No 407
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=42.97 E-value=14 Score=20.47 Aligned_cols=11 Identities=27% Similarity=0.332 Sum_probs=7.4
Q ss_pred cchhhhHHHHh
Q 047992 830 HCHETAKYVSM 840 (868)
Q Consensus 830 dch~~~k~~s~ 840 (868)
.-|.++|+||.
T Consensus 11 glhe~ikli~n 21 (23)
T PF08225_consen 11 GLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHhc
Confidence 34777777763
No 408
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=42.30 E-value=1.6e+02 Score=29.18 Aligned_cols=128 Identities=16% Similarity=0.177 Sum_probs=67.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHH--HHHHHHHHhhcc
Q 047992 538 MNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLK-PNRG--TFLSIILAHSLA 614 (868)
Q Consensus 538 ~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~--t~~~ll~a~~~~ 614 (868)
|...++.|...|.- ..|.+.++.|| =....|+++.|+++.+.+++.|.. |+.. ++-+++
T Consensus 67 Y~p~V~g~L~~g~~-----------~qd~Vl~~~mv-W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~v------ 128 (230)
T PHA02537 67 YLPWVEGVLAAGAG-----------YQDDVLMTVMV-WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFV------ 128 (230)
T ss_pred hHHHHHHHHHcCCC-----------CCCCeeeEeee-eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHH------
Confidence 55566666655531 23333333332 235689999999999999998754 5541 222222
Q ss_pred CChHHHHHHHHHhhhhc--CCCCChhHHHHHHHhhhhcCChHHHHHHHH--hCCCCCCHHHHHHHHHHHH---------h
Q 047992 615 GMVDLGKKVFCSITECY--QIIPMIEHYSAMIDLYGRSGKLEEAMEFIE--DMPIEPDSSIWEALLTACR---------I 681 (868)
Q Consensus 615 g~~~~a~~~~~~m~~~~--~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~--~~~~~p~~~~w~~ll~a~~---------~ 681 (868)
+.++++.....+ |-..++.....+ ..+.. .||-+...-.+..+...+. .
T Consensus 129 -----aeev~~~A~~~~~ag~~~e~~~~~~~-------------~~l~~~~dmpd~vrAKl~K~~G~~llr~~~g~~~~d 190 (230)
T PHA02537 129 -----AEEVANAALKAASAGESVEPYFLRVF-------------LDLTTEWDMPDEVRAKLYKAAGYLLLRNEKGEPIGD 190 (230)
T ss_pred -----HHHHHHHHHHHHHcCCCCChHHHHHH-------------HHHHhcCCCChHHHHHHHHHHHHHHhhcccCCCccC
Confidence 222232222221 222222222221 12222 2332233335555555552 3
Q ss_pred cCCHHHHHHHHHHHhccCCC
Q 047992 682 HGNIDLAVLAIERLFDLEPG 701 (868)
Q Consensus 682 ~~~~~~a~~~~~~~~~l~p~ 701 (868)
.++.+.|...++++++++|+
T Consensus 191 ~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 191 AETLQLALALLQRAFQLNDK 210 (230)
T ss_pred cccHHHHHHHHHHHHHhCCC
Confidence 45778999999999999985
No 409
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=41.69 E-value=1.8e+02 Score=27.80 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=33.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC------CCceecHHHHH-HHHhcCC--hHHHHHHHHHHHHC
Q 047992 540 SLIDTYAKSGNIVYSRTIFDGMSS------KDIITWNSLIC-GYVLHGF--WHAALDLFDQMKSF 595 (868)
Q Consensus 540 ~Li~~y~k~g~~~~A~~~f~~~~~------~d~~~~~~li~-~~~~~g~--~~~A~~l~~~m~~~ 595 (868)
.-+-.....|++++|.+-++++.. +-...|+.+.. +++.++. +-+|.-++.-....
T Consensus 34 ~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 34 GEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 333344566778888777776642 23446666665 6777765 55666666655443
No 410
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=41.55 E-value=4.8e+02 Score=28.08 Aligned_cols=88 Identities=17% Similarity=0.117 Sum_probs=52.4
Q ss_pred HHhhccCChHHHHHHHHHhhhhcCCCCC--hhHHHHHHHhhh-hcCChHHHHHHHHhCCC---------CCCHHHHHHHH
Q 047992 609 LAHSLAGMVDLGKKVFCSITECYQIIPM--IEHYSAMIDLYG-RSGKLEEAMEFIEDMPI---------EPDSSIWEALL 676 (868)
Q Consensus 609 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lvd~l~-r~g~~~eA~~~i~~~~~---------~p~~~~w~~ll 676 (868)
..+.+.|-+..|.++.+-+.. +.|+ +-+--.+||.|. |+++++--+++++.... -|+ ..++.-|
T Consensus 111 ~~L~~RG~~rTAlE~~KlLls---Ldp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-~a~S~aL 186 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLS---LDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-FAFSIAL 186 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHh---cCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-HHHHHHH
Confidence 355667777777777776643 4444 333445566654 77777777777776422 122 2333334
Q ss_pred HHHHhcCC--------------HHHHHHHHHHHhccCC
Q 047992 677 TACRIHGN--------------IDLAVLAIERLFDLEP 700 (868)
Q Consensus 677 ~a~~~~~~--------------~~~a~~~~~~~~~l~p 700 (868)
.-....++ .+.|..+..+++..-|
T Consensus 187 A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 187 AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 33333333 3888888888888877
No 411
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=41.53 E-value=84 Score=30.25 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 047992 664 PIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEP 700 (868)
Q Consensus 664 ~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p 700 (868)
...|++.++..++.++...|+.++|++..+++..+-|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3568888888888888888888888888888888888
No 412
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=40.52 E-value=94 Score=27.21 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=18.8
Q ss_pred cCCCCCcccHHHHHHHHhccCChHHHHHHHHHh
Q 047992 51 QGAKVRRNTYINLLQACIDSNSIHLARKLHAFL 83 (868)
Q Consensus 51 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~ 83 (868)
.+.-|++......|++|.+-+++..|.++++-+
T Consensus 78 yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~i 110 (149)
T KOG4077|consen 78 YDLVPSPKVIEAALRACRRVNDFATAVRILEAI 110 (149)
T ss_pred cccCCChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344455555555566665556666665555555
No 413
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=40.37 E-value=66 Score=22.31 Aligned_cols=23 Identities=17% Similarity=0.547 Sum_probs=13.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 047992 229 MISGYFQIGENDEAHRLFDKMCR 251 (868)
Q Consensus 229 li~~~~~~g~~~~A~~l~~~m~~ 251 (868)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34555555666666666655554
No 414
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=40.36 E-value=45 Score=25.12 Aligned_cols=45 Identities=13% Similarity=0.204 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhh
Q 047992 583 HAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITE 629 (868)
Q Consensus 583 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 629 (868)
++..++.+.++. .+-|-.--..++.++.+.|.+++|.+|.+.+.+
T Consensus 7 ~~~~~~~~~lR~--~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 7 EELEELIDSLRA--QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444444443 334555556677777777777777777776655
No 415
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=39.84 E-value=20 Score=31.89 Aligned_cols=71 Identities=7% Similarity=-0.001 Sum_probs=47.0
Q ss_pred EEEEcCEEEEEEeCC-CCCCchHHHHHHHHhCCCccCCC--CCCCCCCchhhhhhhhhhccchHHHHHHHhhcCCCCCCc
Q 047992 742 WIEVKNLVYTFVTGG-WSESYSDLLYSWLQNVPENVTAR--SSHSGLCIEEEEKEEISGIHSEKLALAFALIGSSQAPHT 818 (868)
Q Consensus 742 ~i~~~~~~~~f~~~d-~~hp~~~~i~~~l~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~~~~ 818 (868)
|+.-.+..-.|..|| ..||++..+--.|++.--.+ ++ ..++.-|++ +.+.||--||+.+.| +
T Consensus 30 ~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~-~~~~v~~akVDiD----------~~~~LA~~fgV~siP----T 94 (132)
T PRK11509 30 WLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREF-PDYTWQVAIADLE----------QSEAIGDRFGVFRFP----A 94 (132)
T ss_pred HHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHh-cCCceEEEEEECC----------CCHHHHHHcCCccCC----E
Confidence 343444555899999 68999888777776221110 21 123444554 457899999999999 8
Q ss_pred EEEeccccc
Q 047992 819 IRIVKNIRM 827 (868)
Q Consensus 819 ~~~~knlr~ 827 (868)
+-++||=+.
T Consensus 95 Ll~FkdGk~ 103 (132)
T PRK11509 95 TLVFTGGNY 103 (132)
T ss_pred EEEEECCEE
Confidence 888888654
No 416
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=39.75 E-value=60 Score=22.50 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=14.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 047992 572 LICGYVLHGFWHAALDLFDQMKS 594 (868)
Q Consensus 572 li~~~~~~g~~~~A~~l~~~m~~ 594 (868)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44556666666666666666664
No 417
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=39.57 E-value=2.6e+02 Score=28.47 Aligned_cols=87 Identities=13% Similarity=0.082 Sum_probs=45.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHh----
Q 047992 230 ISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQ---- 305 (868)
Q Consensus 230 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---- 305 (868)
|.+++..+++.+++...-+--+.--+........-|-.|+|.+....+.++-..-.+.--.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5566666666666554433332211223334444455566666666666665554433222234446666655554
Q ss_pred -cCChhHHHHHH
Q 047992 306 -NGRTSQALDLF 316 (868)
Q Consensus 306 -~g~~~~A~~l~ 316 (868)
.|.+++|.++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 36777776665
No 418
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=39.45 E-value=4.3e+02 Score=26.89 Aligned_cols=83 Identities=18% Similarity=0.170 Sum_probs=44.8
Q ss_pred CCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHH
Q 047992 190 CVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYN 269 (868)
Q Consensus 190 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 269 (868)
-|+.....+...|.+.|++.+|++.|-.-..++...+-.++.-....|...++--...+ .+-.|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~R---------------aVL~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIAR---------------AVLQYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHH---------------HHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHH---------------HHHHHH
Confidence 35667778888888999998888877554433333332334333333443333111111 233456
Q ss_pred hcCChHHHHHHHHHHHhc
Q 047992 270 QLGQCDVAMEMVKRMESL 287 (868)
Q Consensus 270 ~~g~~~~A~~~~~~m~~~ 287 (868)
-.++...|...++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 667788888777766543
No 419
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=39.36 E-value=4.3e+02 Score=26.93 Aligned_cols=28 Identities=11% Similarity=0.169 Sum_probs=17.3
Q ss_pred HHhcCChhHHHHHHHHhhcCCCCCCHHh
Q 047992 475 YQQLGQKNNALGVFRKMQSSCFYPNCVT 502 (868)
Q Consensus 475 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t 502 (868)
..+.+++++|...+.+....|+..|..|
T Consensus 13 ~v~~~~~~~ai~~yk~iL~kg~s~dek~ 40 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILGKGVSKDEKT 40 (421)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCChhhhh
Confidence 3445566666666666676666665544
No 420
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=39.28 E-value=93 Score=26.66 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=25.5
Q ss_pred eecHHHHHHHHhcCChHHHHHHHHHHHH
Q 047992 567 ITWNSLICGYVLHGFWHAALDLFDQMKS 594 (868)
Q Consensus 567 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 594 (868)
.-|..++.-|..+|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3689999999999999999999999877
No 421
>COG4890 Predicted outer membrane lipoprotein [Function unknown]
Probab=38.85 E-value=18 Score=22.94 Aligned_cols=11 Identities=45% Similarity=0.637 Sum_probs=8.7
Q ss_pred HHHHHHHhhcC
Q 047992 802 KLALAFALIGS 812 (868)
Q Consensus 802 ~la~~~~~~~~ 812 (868)
-||.|||+|+.
T Consensus 11 lLAcAFgiinA 21 (37)
T COG4890 11 LLACAFGIINA 21 (37)
T ss_pred HHHHHHHHHHH
Confidence 48899999863
No 422
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.75 E-value=33 Score=30.33 Aligned_cols=42 Identities=17% Similarity=0.201 Sum_probs=29.2
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAH 611 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 611 (868)
.|-.=-...-..|.-.+|-.+|++|+..|-.|| .|..||.++
T Consensus 97 aWvNDe~tlR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 97 AWVNDEQTLRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred EEeCCCcchhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 554322233445777789999999999999998 455666554
No 423
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=38.67 E-value=21 Score=30.71 Aligned_cols=70 Identities=13% Similarity=0.112 Sum_probs=47.9
Q ss_pred cEEEEcCEEEEEEeCCC-CCCchHHHHHHHHh--CCCccCCCCCCCCCCchhhhhhhhhhccchHHHHHHHhhcCCCCCC
Q 047992 741 CWIEVKNLVYTFVTGGW-SESYSDLLYSWLQN--VPENVTARSSHSGLCIEEEEKEEISGIHSEKLALAFALIGSSQAPH 817 (868)
Q Consensus 741 s~i~~~~~~~~f~~~d~-~hp~~~~i~~~l~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~~~ 817 (868)
+|++.++.+-.|...+. ++|...+|...|++ .-|. ....++.-|++++ ..||-.|++-+.|
T Consensus 22 ~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~--~~v~f~kVdid~~----------~~la~~f~V~sIP---- 85 (111)
T cd02965 22 DWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFP--GRFRAAVVGRADE----------QALAARFGVLRTP---- 85 (111)
T ss_pred HHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCC--CcEEEEEEECCCC----------HHHHHHcCCCcCC----
Confidence 45667777777777775 89999998888872 2232 2223334455442 3688889999999
Q ss_pred cEEEecccc
Q 047992 818 TIRIVKNIR 826 (868)
Q Consensus 818 ~~~~~knlr 826 (868)
++.++||=+
T Consensus 86 Tli~fkdGk 94 (111)
T cd02965 86 ALLFFRDGR 94 (111)
T ss_pred EEEEEECCE
Confidence 888998754
No 424
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=38.31 E-value=1.2e+02 Score=31.48 Aligned_cols=87 Identities=16% Similarity=0.156 Sum_probs=64.8
Q ss_pred hHHHHHHHhhhhcCChHHHHHHHHhC-C---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHH
Q 047992 638 EHYSAMIDLYGRSGKLEEAMEFIEDM-P---IEPD--SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQ 711 (868)
Q Consensus 638 ~~y~~lvd~l~r~g~~~eA~~~i~~~-~---~~p~--~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 711 (868)
++|--=..-|.+..++..|.+.+.+- . -.|| .+.|..-..+-...||+..+..-..+++.++|.+.-+|.-=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 34444456677889999999999876 1 1232 3345555555566799999999999999999999999998888
Q ss_pred HHhhcCCChhHHH
Q 047992 712 IYAICGKPEDALK 724 (868)
Q Consensus 712 ~y~~~g~~~~a~~ 724 (868)
.+....++++|..
T Consensus 162 c~~eLe~~~~a~n 174 (390)
T KOG0551|consen 162 CLLELERFAEAVN 174 (390)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888555544
No 425
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=38.21 E-value=2.8e+02 Score=27.60 Aligned_cols=53 Identities=8% Similarity=0.034 Sum_probs=29.3
Q ss_pred cCCHHHHHHHHhcCC--CCCc-eecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 047992 548 SGNIVYSRTIFDGMS--SKDI-ITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRG 602 (868)
Q Consensus 548 ~g~~~~A~~~f~~~~--~~d~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 602 (868)
...+++|..-+.+.. .|++ .-|+.-+..+.+..+++.+.+--.+.++ +.||.+
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~v 78 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLV 78 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHH
Confidence 344555655555432 3444 3345555566666666666666666655 566654
No 426
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=37.73 E-value=4.5e+02 Score=26.70 Aligned_cols=31 Identities=16% Similarity=0.052 Sum_probs=23.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMSSK 564 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~ 564 (868)
|+.+...+...|.+.|++.+|+.-|-.-..+
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~ 119 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDP 119 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCCh
Confidence 7888899999999999999999877654433
No 427
>PRK02935 hypothetical protein; Provisional
Probab=37.26 E-value=18 Score=29.92 Aligned_cols=25 Identities=12% Similarity=0.631 Sum_probs=18.1
Q ss_pred HhhcCCCCCCcEEEecccccCCcchhhhHHHHhh
Q 047992 808 ALIGSSQAPHTIRIVKNIRMCVHCHETAKYVSMM 841 (868)
Q Consensus 808 ~~~~~~~~~~~~~~~knlr~c~dch~~~k~~s~~ 841 (868)
|.+||. .++| +|..||-.+|.+-++
T Consensus 62 GmlStk----avqV-----~CP~C~K~TKmLGrv 86 (110)
T PRK02935 62 GMLSTK----AVQV-----ICPSCEKPTKMLGRV 86 (110)
T ss_pred hhhccc----ceee-----ECCCCCchhhhccce
Confidence 555655 5555 799999999977543
No 428
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=37.21 E-value=5.3e+02 Score=27.29 Aligned_cols=106 Identities=14% Similarity=0.169 Sum_probs=63.5
Q ss_pred hhHHHHHHHhcCChhHHHHHHhhcCCCCceeHHHHHHHHHhCCChhHHH-HHHHHhHHCCCCCCcchHHHHHHHhhCCCC
Q 047992 94 KTKLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRWREVV-ELFFLMVQDGLFPDDFLFPKILQACGNCGD 172 (868)
Q Consensus 94 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~-~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 172 (868)
...+.+.+++.++.+.+..+-..++.-......++..++-...-.+... .+++.+... ||......++++.+....
T Consensus 169 LQGIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~ 245 (340)
T PF12069_consen 169 LQGIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPA 245 (340)
T ss_pred hhHHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCc
Confidence 4556778888888777777666666533334455555544444333333 344444433 899999999999988877
Q ss_pred hHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHc
Q 047992 173 FEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKC 205 (868)
Q Consensus 173 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 205 (868)
..........++......+.. .|+...+||
T Consensus 246 ~~~~~~~i~~~L~~~~~~~~e---~Li~IAgR~ 275 (340)
T PF12069_consen 246 SDLVAILIDALLQSPRLCHPE---VLIAIAGRC 275 (340)
T ss_pred hhHHHHHHHHHhcCcccCChH---HHHHHHhcC
Confidence 766666566666544323332 344444444
No 429
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=37.11 E-value=4.8e+02 Score=26.82 Aligned_cols=110 Identities=7% Similarity=0.069 Sum_probs=70.0
Q ss_pred ChHHHHHHHhhcCC-----CChhhHHHHHHHHHh-cC-ChhHHHHHHHHHHH-cCCccChhhHHHHHHHHHhcCChHHHH
Q 047992 207 KLIWARRFFESMDE-----KDGVAWNSMISGYFQ-IG-ENDEAHRLFDKMCR-EEIKLGVVTFNILIRSYNQLGQCDVAM 278 (868)
Q Consensus 207 ~~~~A~~~f~~~~~-----~d~~~~~~li~~~~~-~g-~~~~A~~l~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~A~ 278 (868)
.+.+|.++|+.... .|...-..+++.... .+ ....-.++.+-+.. .+-.++..+...++..+++.+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 35677788874322 255555666666655 22 22222233333332 245677778888888888888888888
Q ss_pred HHHHHHHhc-CCCCCeeeHHHHHHHHHhcCChhHHHHHH
Q 047992 279 EMVKRMESL-GITPDVFTWTCMISGFAQNGRTSQALDLF 316 (868)
Q Consensus 279 ~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~l~ 316 (868)
++++..... ++.-|...|...|....++|+..-...+.
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 888776655 66668888888888888888865544443
No 430
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=36.83 E-value=42 Score=29.70 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=24.8
Q ss_pred CCChhHHHHHHHHhHHCCCCCCcchHHHHHHHh
Q 047992 135 DQRWREVVELFFLMVQDGLFPDDFLFPKILQAC 167 (868)
Q Consensus 135 ~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~ 167 (868)
.|.-.+|..+|++|+.+|-+||. ++.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 45666899999999999999985 66677654
No 431
>PRK10941 hypothetical protein; Provisional
Probab=36.74 E-value=1.5e+02 Score=30.35 Aligned_cols=69 Identities=10% Similarity=0.069 Sum_probs=53.4
Q ss_pred HHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 047992 642 AMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLIL 710 (868)
Q Consensus 642 ~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 710 (868)
.+-..|.+.++++.|....+.+ -+.|+ +.-|+--.-.+..-|....|..-++..++.-|+++.+-.+-.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ 256 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRA 256 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 3445677888999999888887 45554 446777777788899999999999999999998887655443
No 432
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=36.25 E-value=6.1e+02 Score=27.73 Aligned_cols=72 Identities=14% Similarity=0.157 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCC---CeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHh
Q 047992 366 GNSLINMYSKCEELEAAERVFDMIKDK---DVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQ 441 (868)
Q Consensus 366 ~~~li~~y~~~g~~~~A~~vf~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 441 (868)
...|+.-|...|++.+|.+.++.+.-| ..+.+.+++.+.-+.|+-..-+.++++.-.+| .+|-+.|-.+|.+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQMtkGf~R 586 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG----LITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHHhhhhhhh
Confidence 345788888999999999999887765 45678888888888888888888887777554 5677777766644
No 433
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=36.03 E-value=9.3e+02 Score=29.81 Aligned_cols=38 Identities=8% Similarity=-0.060 Sum_probs=22.6
Q ss_pred HHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhH
Q 047992 383 ERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQ 421 (868)
Q Consensus 383 ~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 421 (868)
..+...+.++|...-..-+..+.+.+.. ++...+.+..
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL 661 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAAL 661 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHH
Confidence 3455556667777766667777766653 3444444444
No 434
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=36.03 E-value=61 Score=25.75 Aligned_cols=45 Identities=13% Similarity=0.033 Sum_probs=20.7
Q ss_pred CChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcCChHHHHHH
Q 047992 615 GMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRSGKLEEAMEF 659 (868)
Q Consensus 615 g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA~~~ 659 (868)
..-++|+..+.+..++..-.|+ ....+|++.+|...|++++++++
T Consensus 20 ~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 20 NETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred chHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443322222 12345555555555555555554
No 435
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=36.01 E-value=51 Score=35.11 Aligned_cols=46 Identities=15% Similarity=0.091 Sum_probs=29.4
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHH
Q 047992 679 CRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALK 724 (868)
Q Consensus 679 ~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 724 (868)
|...++.++|..-+-+-+-++|...-++.--+-++-...||.+|.+
T Consensus 238 YL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAar 283 (569)
T PF15015_consen 238 YLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAAR 283 (569)
T ss_pred hhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777777666666555555555555655544
No 436
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=35.66 E-value=2.2e+02 Score=23.22 Aligned_cols=65 Identities=8% Similarity=0.050 Sum_probs=39.2
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHH
Q 047992 348 MEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAY 414 (868)
Q Consensus 348 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~ 414 (868)
.+++...+..|+-.+ .....+-..-...|+.+.|+++++.++ +....+..++.++-..|+-.-|.
T Consensus 22 ~~v~d~ll~~~ilT~-~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 22 RDVCDKCLEQGLLTE-EDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHhcCCCCH-HHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 455555565553221 122222222235678888888888888 77777778887777777655543
No 437
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=34.88 E-value=15 Score=27.74 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=16.5
Q ss_pred ceEEEEecCCcccccCCCccC
Q 047992 843 HCEIFLADSKCLHHFKNGQCS 863 (868)
Q Consensus 843 ~r~i~~rd~~rfh~f~~g~cs 863 (868)
...|=+.|.+-.|+||||+-+
T Consensus 7 ~ksi~LkDGstvyiFKDGKMa 27 (73)
T PF11525_consen 7 KKSIPLKDGSTVYIFKDGKMA 27 (73)
T ss_dssp EEEEEBTTSEEEEEETTS-EE
T ss_pred heeEecCCCCEEEEEcCCcee
Confidence 345778999999999999854
No 438
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=34.77 E-value=79 Score=26.14 Aligned_cols=50 Identities=20% Similarity=0.200 Sum_probs=34.7
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCC---------chhHHHHHHHHhhcCCChhHHHHHHH
Q 047992 679 CRIHGNIDLAVLAIERLFDLEPGD---------VLIQRLILQIYAICGKPEDALKVRKL 728 (868)
Q Consensus 679 ~~~~~~~~~a~~~~~~~~~l~p~~---------~~~~~~l~~~y~~~g~~~~a~~~~~~ 728 (868)
+...||+..|...+.+.++....+ ..+...++.++...|.+++|.+..+.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~e 66 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEE 66 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 345678888877777777644322 23346688899999999999886543
No 439
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=34.38 E-value=9.2e+02 Score=29.60 Aligned_cols=122 Identities=12% Similarity=0.132 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChh-HHHHHHHhhhhcCChHHHHHHHHhCCC---CCCHHHHHHH
Q 047992 600 NRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIE-HYSAMIDLYGRSGKLEEAMEFIEDMPI---EPDSSIWEAL 675 (868)
Q Consensus 600 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~y~~lvd~l~r~g~~~eA~~~i~~~~~---~p~~~~w~~l 675 (868)
|..--.+.|++..+.+. .+....+...-+.+...|-+. -|-.+...-.+.+-++...++.+.-.+ .|| -.++|
T Consensus 703 ~mtd~~~al~~l~~~~~-~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~h~~f~~~npn--~~ral 779 (863)
T TIGR02414 703 NMTDRLAALSALVHFES-DFRERALAAFYQKWKDDPLVMDKWFALQATSPRPDTLERVKALLQHPAFDLKNPN--RVRAL 779 (863)
T ss_pred CHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHCCCchhHHHHHHHHhCCCcccHHHHHHHHhcCCCCCcCCCc--HHHHH
Confidence 33344455555554443 233344554445555556543 344444333344445555555444323 344 45688
Q ss_pred HHHHHhcCC------HHH-HHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHH
Q 047992 676 LTACRIHGN------IDL-AVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALK 724 (868)
Q Consensus 676 l~a~~~~~~------~~~-a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 724 (868)
+++....+. -.. =.-+++.+++++|-||..-.-|...+..=.++++..+
T Consensus 780 ~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~w~~~~~~r~ 835 (863)
T TIGR02414 780 IGAFANNNLVRFHDISGSGYRFLADQIIAIDRFNPQVAARLLEPLTRWRKLDPKRQ 835 (863)
T ss_pred HHHHHhcCcccccCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhcCCHHHH
Confidence 888743221 122 3556789999999999888888888888788877665
No 440
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=33.92 E-value=2.2e+02 Score=24.26 Aligned_cols=78 Identities=14% Similarity=0.079 Sum_probs=47.8
Q ss_pred ChHHHHHHHHHh-hhcCCCChhhhhHHHHHHHhcCChhHHHHHHhhcCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHH
Q 047992 72 SIHLARKLHAFL-NLVTEIDVFVKTKLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELFFLMVQ 150 (868)
Q Consensus 72 ~~~~a~~i~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 150 (868)
..++|..|.+.+ ..+. ....+.-.-+..+...|+++.|...=...+.||...|-+|-.+ +.|...++...+.++-.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a~--klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCAW--KLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHHH--HCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 466777777777 3332 2233333344566788999999665566677899999777654 67777788877777765
Q ss_pred CC
Q 047992 151 DG 152 (868)
Q Consensus 151 ~g 152 (868)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 54
No 441
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=33.80 E-value=3.4e+02 Score=31.38 Aligned_cols=93 Identities=8% Similarity=0.129 Sum_probs=42.5
Q ss_pred CcchHHHHHHHHHHcCC--hHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHH
Q 047992 191 VRRVRNSVLAVYVKCGK--LIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSY 268 (868)
Q Consensus 191 ~~~~~~~li~~y~~~g~--~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 268 (868)
+...|..-+.-+..|++ ......++.+.|-++...-.-++..|.+.|..+.|.++.+.+-..-.. ..-|..-+..+
T Consensus 371 ~~~lW~vai~yL~~c~~~g~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~ 448 (566)
T PF07575_consen 371 HHSLWQVAIGYLSSCPDEGRERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWF 448 (566)
T ss_dssp -TTTHHHHHHHHHS-SSS-HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHH
Confidence 34445555555555543 333445556666666666677788888888888888888776543221 23455666667
Q ss_pred HhcCChHHHHHHHHHHH
Q 047992 269 NQLGQCDVAMEMVKRME 285 (868)
Q Consensus 269 ~~~g~~~~A~~~~~~m~ 285 (868)
.++|+...+..+-+.+.
T Consensus 449 ~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 449 IRAGDYSLVTRIADRLL 465 (566)
T ss_dssp H----------------
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 77777666655555444
No 442
>PRK14015 pepN aminopeptidase N; Provisional
Probab=33.78 E-value=9.2e+02 Score=29.64 Aligned_cols=122 Identities=10% Similarity=0.108 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCCh-hHHHHHHHhhhhcCChHHHHHHHHhCCC---CCCHHHHHHH
Q 047992 600 NRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMI-EHYSAMIDLYGRSGKLEEAMEFIEDMPI---EPDSSIWEAL 675 (868)
Q Consensus 600 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lvd~l~r~g~~~eA~~~i~~~~~---~p~~~~w~~l 675 (868)
|..--.+.|++..+.+. ++....++..-+.+...|-+ +-|-.+...--+.+-++...++.+.-.+ .|| -.++|
T Consensus 713 ~mtd~~~al~~l~~~~~-~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~hp~f~~~npn--~~ral 789 (875)
T PRK14015 713 NMTDRLAALSALVNADL-PERDEALADFYDRWKDDPLVMDKWFALQATSPAPDTLERVRALMQHPAFDLKNPN--RVRSL 789 (875)
T ss_pred CHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHhCCCchhhHHHHHHHhCCCCcCHHHHHHHHhcCCCCCCCCCc--HHHHH
Confidence 44444555566655444 23333444444455555554 3454444443444445555555444323 344 45788
Q ss_pred HHHHHhcCC------HHHH-HHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHH
Q 047992 676 LTACRIHGN------IDLA-VLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALK 724 (868)
Q Consensus 676 l~a~~~~~~------~~~a-~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 724 (868)
+++....+- -..| .-+++.+++++|-||..-.-|...+..-.++++..+
T Consensus 790 ~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~~~~~~~~r~ 845 (875)
T PRK14015 790 IGAFAAANPAGFHAADGSGYRFLADQILALDKINPQVAARLATPLIRWRRYDPKRQ 845 (875)
T ss_pred HHHHhhcCCcccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhccCHHHH
Confidence 888743322 2333 456788999999999888888888888778777665
No 443
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=33.32 E-value=16 Score=30.64 Aligned_cols=31 Identities=16% Similarity=0.197 Sum_probs=19.6
Q ss_pred cccccCCcc-hhhhHHHHhhhceEEEEecCCc
Q 047992 823 KNIRMCVHC-HETAKYVSMMHHCEIFLADSKC 853 (868)
Q Consensus 823 knlr~c~dc-h~~~k~~s~~~~r~i~~rd~~r 853 (868)
-++-||.+| |+|.+--.....-..++||+|-
T Consensus 17 g~~~iCpeC~~EW~~~~~~~~~~~~~~kDsnG 48 (109)
T TIGR00686 17 GTQLICPSCLYEWNENEVNDDDDELIVKDCNG 48 (109)
T ss_pred CCeeECccccccccccccccccCCceEEcCCC
Confidence 367899999 7776653222222257899874
No 444
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=32.45 E-value=5.7e+02 Score=28.89 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=19.9
Q ss_pred HHHHHHHHHcCChHHHHHHHhhcCC
Q 047992 196 NSVLAVYVKCGKLIWARRFFESMDE 220 (868)
Q Consensus 196 ~~li~~y~~~g~~~~A~~~f~~~~~ 220 (868)
..|+.-|.+++++++|..++..|.-
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW 436 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNW 436 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCc
Confidence 4577788888888888888888763
No 445
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=32.44 E-value=4.4e+02 Score=27.35 Aligned_cols=52 Identities=17% Similarity=0.244 Sum_probs=31.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047992 264 LIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSF 321 (868)
Q Consensus 264 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 321 (868)
++..+.+..++.+..+.+..+. ....-...+..+...|+|..|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3344444444444444444443 233345567777788888888888877754
No 446
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=31.79 E-value=2.7e+02 Score=31.84 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=32.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc--CCccChhhHHHHHHHHHhcCCh
Q 047992 228 SMISGYFQIGENDEAHRLFDKMCRE--EIKLGVVTFNILIRSYNQLGQC 274 (868)
Q Consensus 228 ~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~~~~~li~~~~~~g~~ 274 (868)
++..+|..+|++..+.++++.+... |-+.-...+|.-|+...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 7888888888888888888887653 3333344566666666666654
No 447
>PF01147 Crust_neurohorm: Crustacean CHH/MIH/GIH neurohormone family; InterPro: IPR001166 Arthropod express a family of neuropeptides [] which so far consist of the following types of neurohormones: Crustacean hyperglycemic hormone (CHH). CHH is primarily involved in blood sugar regulation, but also plays a role in the control of molting and reproduction. Molt-inhibiting hormone (MIH). MIH inhibits Y-organs where molting hormone (ecdysteroid) is secreted. A molting cycle is initiated when MIH secretion diminishes or stops. Gonad-inhibiting hormone (GIH), also known as vitellogenesis-inhibiting hormone (VIH) because of its role in inhibiting vitellogenesis in female animals. Mandibular organ-inhibiting hormone (MOIH). MOIH represses the synthesis of methyl farnesoate, the precursor of insect juvenile hormone III in the mandibular organ. Ion transport peptide (ITP) from locust. ITP stimulates salt and water reabsorption and inhibits acid secretion in the ileum of the locust. Caenorhabditis elegans hypothetical protein ZC168.2. These neurohormones are peptides of 70 to 80 residues which are processed from larger size precursors. They contain six conserved cysteines that are involved in disulphide bonds, as shown in the following schematic representation. ; GO: 0005184 neuropeptide hormone activity, 0005576 extracellular region; PDB: 1J0T_A.
Probab=31.69 E-value=7.7 Score=30.16 Aligned_cols=13 Identities=31% Similarity=0.470 Sum_probs=10.6
Q ss_pred cccccCCcchhhh
Q 047992 823 KNIRMCVHCHETA 835 (868)
Q Consensus 823 knlr~c~dch~~~ 835 (868)
|--|||.|||+..
T Consensus 18 kldrVC~DCyNl~ 30 (73)
T PF01147_consen 18 KLDRVCDDCYNLF 30 (73)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4569999999875
No 448
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=31.68 E-value=1e+02 Score=21.74 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=27.4
Q ss_pred HHHHHhCCChhHHHHHHHHHhhcCCCCCcccHHHHHHH
Q 047992 29 LDFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQA 66 (868)
Q Consensus 29 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 66 (868)
+-...+.|-..++.++++.|.+.|...++..+..+++.
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 34445677777788888888888887777777776654
No 449
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=31.56 E-value=6.2e+02 Score=26.67 Aligned_cols=113 Identities=14% Similarity=0.152 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhh---cCChHHHHH
Q 047992 583 HAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGR---SGKLEEAME 658 (868)
Q Consensus 583 ~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r---~g~~~eA~~ 658 (868)
+.-+.++++.++. .|+. .-....+..+.+....++..+-++.+...+.- +...|...++.... .-.+++..+
T Consensus 48 E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~--~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 48 ERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG--SPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC--ChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 4445556665553 3433 44455555565555555555556655553222 22334444433222 112222222
Q ss_pred HHHh-------CCC--------CC--CHHHHHHHHHHH---HhcCCHHHHHHHHHHHhccC
Q 047992 659 FIED-------MPI--------EP--DSSIWEALLTAC---RIHGNIDLAVLAIERLFDLE 699 (868)
Q Consensus 659 ~i~~-------~~~--------~p--~~~~w~~ll~a~---~~~~~~~~a~~~~~~~~~l~ 699 (868)
.+.+ ..- .| +......++..| +..|-.|.|..+++-++|++
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 2222 110 11 122333344444 56799999999999999865
No 450
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=31.44 E-value=3.4e+02 Score=26.91 Aligned_cols=136 Identities=11% Similarity=0.099 Sum_probs=72.3
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHH
Q 047992 369 LINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEA 448 (868)
Q Consensus 369 li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 448 (868)
.+..|++.-++.-|...++.+.+|= . -.+.+--|.+..+.+---++.+-....+++-+.....+++ +...|++..|
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiEPI-Q-SRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQa 211 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIEPI-Q-SRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQA 211 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhhhH-H-hhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHH
Confidence 3556666666666655555555430 0 1122223444444444444555555566666666665555 4567888888
Q ss_pred HHHHHhcccCCCC-----------CCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHH
Q 047992 449 VDLFQRMGKNDKV-----------KRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPAC 510 (868)
Q Consensus 449 ~~~f~~m~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 510 (868)
+..++.-....+. .|.+.....|+. ++..++.++|.+.+.++-+.|+.|.... +++.+.|
T Consensus 212 lNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~-~~~~~~~~~A~~il~~lw~lgysp~Dii-~~~FRv~ 282 (333)
T KOG0991|consen 212 LNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQ-ACLKRNIDEALKILAELWKLGYSPEDII-TTLFRVV 282 (333)
T ss_pred HHHHHHHhccccccchhhhhhccCCCChHHHHHHHH-HHHhccHHHHHHHHHHHHHcCCCHHHHH-HHHHHHH
Confidence 8877765443321 233333333333 3345567777777777777777665432 3444444
No 451
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=31.26 E-value=1.2e+02 Score=21.45 Aligned_cols=35 Identities=26% Similarity=0.181 Sum_probs=25.3
Q ss_pred HHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHH
Q 047992 132 YSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQA 166 (868)
Q Consensus 132 ~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~ 166 (868)
..+.|...++..++++|.+.|+..+...|..+++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 34667777888888888888887777777666653
No 452
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=31.20 E-value=1.3e+02 Score=24.78 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=19.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCC
Q 047992 674 ALLTACRIHGNIDLAVLAIERLFDLEP 700 (868)
Q Consensus 674 ~ll~a~~~~~~~~~a~~~~~~~~~l~p 700 (868)
.+.......|+.+.|...+++++++-.
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 344456677888888888888887543
No 453
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=30.67 E-value=1.5e+02 Score=30.05 Aligned_cols=55 Identities=33% Similarity=0.210 Sum_probs=45.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHH
Q 047992 674 ALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKL 728 (868)
Q Consensus 674 ~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 728 (868)
.+=+++...+..+.|.++.++++.++|+++....--+-+|+..|-..-|.+-...
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~ 240 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSY 240 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHH
Confidence 3444567789999999999999999999998888888999999988888776554
No 454
>COG5431 Uncharacterized metal-binding protein [Function unknown]
Probab=30.66 E-value=15 Score=30.30 Aligned_cols=12 Identities=42% Similarity=1.077 Sum_probs=9.2
Q ss_pred ccCCCccCCCCC
Q 047992 856 HFKNGQCSCGDY 867 (868)
Q Consensus 856 ~f~~g~csc~d~ 867 (868)
--..|.|||.||
T Consensus 46 Il~~gfCSCp~~ 57 (117)
T COG5431 46 ILEGGFCSCPDF 57 (117)
T ss_pred EEEcCcccCHHH
Confidence 446788999886
No 455
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.62 E-value=5.1e+02 Score=27.55 Aligned_cols=25 Identities=12% Similarity=0.162 Sum_probs=13.2
Q ss_pred CCCHHhHHHHHHHHhchhchHHHHH
Q 047992 497 YPNCVTILSVLPACAYLVASNKVKE 521 (868)
Q Consensus 497 ~p~~~t~~~ll~a~~~~~~~~~~~~ 521 (868)
.|+..|...++.-+....+.++.+.
T Consensus 72 ~~~~~~li~~~~~FV~~~n~eqlr~ 96 (422)
T KOG2582|consen 72 NPDPETLIELLNDFVDENNGEQLRL 96 (422)
T ss_pred CCCHHHHHHHHHHHHHhcChHHHhh
Confidence 3666666666655555444444333
No 456
>PRK13342 recombination factor protein RarA; Reviewed
Probab=30.37 E-value=7.7e+02 Score=27.11 Aligned_cols=34 Identities=15% Similarity=0.064 Sum_probs=22.6
Q ss_pred eHHHHHHHHHh---CCChhHHHHHHHHhHHCCCCCCc
Q 047992 124 TWSAMIGAYSR---DQRWREVVELFFLMVQDGLFPDD 157 (868)
Q Consensus 124 ~~~~li~~~~~---~g~~~~a~~l~~~m~~~g~~p~~ 157 (868)
.+..+++++.+ .++++.|+..+..|.+.|..|..
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~ 265 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLF 265 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHH
Confidence 34445555544 46788888888888887766653
No 457
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=29.84 E-value=1.1e+02 Score=24.33 Aligned_cols=47 Identities=13% Similarity=-0.103 Sum_probs=31.4
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCChHHHHHHH
Q 047992 578 LHGFWHAALDLFDQMKSFGLKPNR--GTFLSIILAHSLAGMVDLGKKVF 624 (868)
Q Consensus 578 ~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~ 624 (868)
...+.++|+..|...++.-..|.. .++-.+..|++..|...+.+.+-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788888887764333332 56666777888888877777654
No 458
>COG4896 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.49 E-value=24 Score=25.84 Aligned_cols=21 Identities=33% Similarity=0.656 Sum_probs=16.3
Q ss_pred cEEEecccccCCcchh--hhHHHHhhh
Q 047992 818 TIRIVKNIRMCVHCHE--TAKYVSMMH 842 (868)
Q Consensus 818 ~~~~~knlr~c~dch~--~~k~~s~~~ 842 (868)
|||-. +|.|||. ++|-+|++-
T Consensus 28 PIrty----mC~eC~~Rva~kt~~R~~ 50 (68)
T COG4896 28 PIRTY----MCPECEHRVAIKTISRVN 50 (68)
T ss_pred CceeE----echhhHhhhchhhHHHhc
Confidence 77764 9999996 778888653
No 459
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=29.48 E-value=2.7e+02 Score=23.82 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=24.9
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHHhHH
Q 047992 123 YTWSAMIGAYSRDQRWREVVELFFLMVQ 150 (868)
Q Consensus 123 ~~~~~li~~~~~~g~~~~a~~l~~~m~~ 150 (868)
.-|..|+.-|...|.+++|++++.++..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3588999999999999999999998876
No 460
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=29.36 E-value=68 Score=28.49 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=34.0
Q ss_pred HHHHHHHhhcCCCCC---CcEEEecccccCCcchhhhHHHHhhhceEEEEecC
Q 047992 802 KLALAFALIGSSQAP---HTIRIVKNIRMCVHCHETAKYVSMMHHCEIFLADS 851 (868)
Q Consensus 802 ~la~~~~~~~~~~~~---~~~~~~knlr~c~dch~~~k~~s~~~~r~i~~rd~ 851 (868)
+...|++|++|.++. ..+-|.|+- -|+-||.++|.+- .-|=+|-+-+.
T Consensus 8 ~~l~a~~l~~~~~~~a~~~~~~vyksP-nCGCC~~w~~~mk-~~Gf~Vk~~~~ 58 (149)
T COG3019 8 RSLAALGLGSTGPAQAQATEMVVYKSP-NCGCCDEWAQHMK-ANGFEVKVVET 58 (149)
T ss_pred HHHHHHHhhcccchhcceeeEEEEeCC-CCccHHHHHHHHH-hCCcEEEEeec
Confidence 456678888887753 156666764 5999999999985 66666655443
No 461
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=29.31 E-value=3.6e+02 Score=30.42 Aligned_cols=98 Identities=18% Similarity=0.208 Sum_probs=70.9
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 047992 639 HYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGK 718 (868)
Q Consensus 639 ~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 718 (868)
.-.|+-|-|..+.++.-|.++-++..+. ...+|.+..-||.+.+|+..|+.-+.+++++..+|..-.+.=.+-...-|-
T Consensus 558 asecLRdqLie~ErYqlaV~mckKc~iD-~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin~ieGgp 636 (1141)
T KOG1811|consen 558 ASECLRDQLIEAERYQLAVEMCKKCGID-TFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIINLIEGGP 636 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCC-cccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHHhhcCCC
Confidence 3567778888888888888888776542 234899999999999999999999999999987665544443344455666
Q ss_pred ChhHHHHHHHHHhcCCCCCC
Q 047992 719 PEDALKVRKLERENTRRNSF 738 (868)
Q Consensus 719 ~~~a~~~~~~m~~~~~~k~~ 738 (868)
..++..||.+. +.-++.-|
T Consensus 637 p~dVq~Vrem~-dhlak~ap 655 (1141)
T KOG1811|consen 637 PRDVQDVREML-DHLAKPAP 655 (1141)
T ss_pred cchHHHHHHHH-HHhccCCc
Confidence 66777777654 44445444
No 462
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=29.28 E-value=5.4e+02 Score=25.72 Aligned_cols=185 Identities=16% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh-hccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhc
Q 047992 572 LICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAH-SLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRS 650 (868)
Q Consensus 572 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~ 650 (868)
|+...-+.|+++++++.++++...+...+..--+.+..|| .-.|..-.+++.+.++.+.-.-..+..+...+-+.-.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki 86 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKKI 86 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHHH
Q ss_pred C-----ChHHHHHHHHhC--CCCCCHH----HHHHHHHHHH----------hcCCHHHHHHHHHHHhc-----cCCCCch
Q 047992 651 G-----KLEEAMEFIEDM--PIEPDSS----IWEALLTACR----------IHGNIDLAVLAIERLFD-----LEPGDVL 704 (868)
Q Consensus 651 g-----~~~eA~~~i~~~--~~~p~~~----~w~~ll~a~~----------~~~~~~~a~~~~~~~~~-----l~p~~~~ 704 (868)
. --.+..+++++. |...+.. .|..-..-+| ...-.+.|..+|+++++ +.|.||.
T Consensus 87 e~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~ 166 (236)
T PF00244_consen 87 EDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPL 166 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcH
Q ss_pred hHHHHHHH----HhhcCCChhHHHHHHHHHhcCCCCCCcccEEEEcCEEEEEEeCCCCCCchHHHHHHHH
Q 047992 705 IQRLILQI----YAICGKPEDALKVRKLERENTRRNSFGQCWIEVKNLVYTFVTGGWSESYSDLLYSWLQ 770 (868)
Q Consensus 705 ~~~~l~~~----y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~ 770 (868)
..-+.-|. |--.|+.++|.++-+..-+..+....+ .++.+++.+..|...|.
T Consensus 167 rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~--------------l~e~~~~d~~~ilqlLr 222 (236)
T PF00244_consen 167 RLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDT--------------LSEESYKDSTLILQLLR 222 (236)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGG--------------SHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcc--------------cchhhhHHHHHHHHHHH
No 463
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=29.19 E-value=1.5e+02 Score=28.46 Aligned_cols=32 Identities=19% Similarity=0.156 Sum_probs=17.8
Q ss_pred CCCCChhHHHHHHHhhhhcCChHHHHHHHHhC
Q 047992 632 QIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM 663 (868)
Q Consensus 632 ~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~ 663 (868)
...|+...|..++.++...|+.+||.+..+++
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455555555555555555555555555554
No 464
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=28.57 E-value=4.1e+02 Score=23.42 Aligned_cols=43 Identities=14% Similarity=0.207 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhc
Q 047992 518 KVKEIHGCVLRRSLES-SLPVMNSLIDTYAKSGNIVYSRTIFDG 560 (868)
Q Consensus 518 ~~~~i~~~~~~~~~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~ 560 (868)
...+++..+...|+.. -...|......+.+.|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7778888888887775 456688888899999999999998864
No 465
>PRK13342 recombination factor protein RarA; Reviewed
Probab=28.30 E-value=8.3e+02 Score=26.84 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=26.8
Q ss_pred hHHHHHHHHHh---cCChhHHHHHHHHHHHcCCccChhhHHHHHHHH
Q 047992 225 AWNSMISGYFQ---IGENDEAHRLFDKMCREEIKLGVVTFNILIRSY 268 (868)
Q Consensus 225 ~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 268 (868)
....+++++.+ .++++.|+..+.+|.+.|..|....-..++.++
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34455555555 467778888888888777666644444444333
No 466
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=28.25 E-value=40 Score=28.55 Aligned_cols=14 Identities=21% Similarity=0.665 Sum_probs=12.7
Q ss_pred CCcchhhhHHHHhh
Q 047992 828 CVHCHETAKYVSMM 841 (868)
Q Consensus 828 c~dch~~~k~~s~~ 841 (868)
|..||-.+|.+.++
T Consensus 72 CP~C~K~TKmLGr~ 85 (114)
T PF11023_consen 72 CPNCGKQTKMLGRV 85 (114)
T ss_pred CCCCCChHhhhchh
Confidence 99999999988765
No 467
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=27.70 E-value=6.8e+02 Score=25.63 Aligned_cols=273 Identities=12% Similarity=0.088 Sum_probs=122.6
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCeeeh-------hhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHH
Q 047992 401 IAGYCQAGYCGKAYELFIKMQESDVPPNVITW-------NVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIA 473 (868)
Q Consensus 401 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-------~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~ 473 (868)
..-..+.+++++|+..+.++...|+..|..+. ..+...|...|+...-.+......+ .+.
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre-------------~m~ 76 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSRE-------------AME 76 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHH-------------HHH
Confidence 33455677888888888888888887776554 4456667777766554444332211 000
Q ss_pred HHHhcCChhHHHHHHHHhhcCCCCCCH-HhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 047992 474 GYQQLGQKNNALGVFRKMQSSCFYPNC-VTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIV 552 (868)
Q Consensus 474 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~ 552 (868)
-+.+. +..+.++.+-++. ...||. .--.-++.+|...++-+.-. ... ..+-.-++..|.+.|.+.
T Consensus 77 ~ftk~-k~~KiirtLiekf--~~~~dsl~dqi~v~~~~iewA~rEkr~-fLr----------~~Le~Kli~l~y~~~~Ys 142 (421)
T COG5159 77 DFTKP-KITKIIRTLIEKF--PYSSDSLEDQIKVLTALIEWADREKRK-FLR----------LELECKLIYLLYKTGKYS 142 (421)
T ss_pred Hhcch-hHHHHHHHHHHhc--CCCCccHHHHHHHHHHHHHHHHHHHHH-HHH----------HHHHHHHHHHHHhcccHH
Confidence 11111 1111122111221 122222 22223444444333322211 111 122356788899999999
Q ss_pred HHHHHHhcC-------C-CCCceecHHHH-HHHHhcCChHHHHHHHHHHH---HC-CCCCCHHHHHHHHHHhhcc--CCh
Q 047992 553 YSRTIFDGM-------S-SKDIITWNSLI-CGYVLHGFWHAALDLFDQMK---SF-GLKPNRGTFLSIILAHSLA--GMV 617 (868)
Q Consensus 553 ~A~~~f~~~-------~-~~d~~~~~~li-~~~~~~g~~~~A~~l~~~m~---~~-g~~p~~~t~~~ll~a~~~~--g~~ 617 (868)
+|..+.+.+ . .++.++.-.+= .+|-.-.+..++..-+...+ .. =.+|--..-.-++++-.|. .++
T Consensus 143 dalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dy 222 (421)
T COG5159 143 DALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDY 222 (421)
T ss_pred HHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccc
Confidence 998776643 2 23333222111 12222222222222221111 11 1334434555566655444 456
Q ss_pred HHHHHHHHHhhhhc-CCCCChhHHHHHHHhhh---hcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcC-----CHH
Q 047992 618 DLGKKVFCSITECY-QIIPMIEHYSAMIDLYG---RSGKLEEAMEFIEDM-PIE-PDSSIWEALLTACRIHG-----NID 686 (868)
Q Consensus 618 ~~a~~~~~~m~~~~-~~~p~~~~y~~lvd~l~---r~g~~~eA~~~i~~~-~~~-p~~~~w~~ll~a~~~~~-----~~~ 686 (868)
.-|..||-...+.| ...-+.+....+--++. -.++.+|...+++.- ..+ -+.....+++.....+| +++
T Consensus 223 ktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~ 302 (421)
T COG5159 223 KTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFS 302 (421)
T ss_pred hhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHH
Confidence 67777776665533 22233333332222221 245556655555432 111 12223344444444444 455
Q ss_pred HHHHHHHHHhccCC
Q 047992 687 LAVLAIERLFDLEP 700 (868)
Q Consensus 687 ~a~~~~~~~~~l~p 700 (868)
.|..-++.-+-.||
T Consensus 303 ~aL~qY~~el~~D~ 316 (421)
T COG5159 303 DALAQYSDELHQDS 316 (421)
T ss_pred HHHHHhhHHhccCH
Confidence 55555554444443
No 468
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=27.42 E-value=3e+02 Score=22.47 Aligned_cols=39 Identities=10% Similarity=0.139 Sum_probs=28.2
Q ss_pred HcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHH
Q 047992 204 KCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAH 243 (868)
Q Consensus 204 ~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~ 243 (868)
..|+.+.|+++++.++ +.+-.|..+++++-..|.-.-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4577777888888877 77777778888777777655443
No 469
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=27.10 E-value=98 Score=31.80 Aligned_cols=41 Identities=32% Similarity=0.417 Sum_probs=34.7
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSII 608 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 608 (868)
-||..|..-...|+.++|+.|++|..+.|+.--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46788999999999999999999999999887667776544
No 470
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=26.91 E-value=2.8e+02 Score=24.49 Aligned_cols=42 Identities=12% Similarity=0.037 Sum_probs=34.1
Q ss_pred HHHHHHHHHhc--cCCCCchhHHHHHHHHhhcCCChhHHHHHHH
Q 047992 687 LAVLAIERLFD--LEPGDVLIQRLILQIYAICGKPEDALKVRKL 728 (868)
Q Consensus 687 ~a~~~~~~~~~--l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 728 (868)
.+..+++.+.. +.-+.+..|...|..+...|++++|.+|.+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 67777777764 6677888999999999999999999998763
No 471
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=26.80 E-value=7.4e+02 Score=25.81 Aligned_cols=202 Identities=11% Similarity=0.035 Sum_probs=0.0
Q ss_pred CCCCHHhHHHHHHHHhchh-chHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC--HHHHHHHHhcC--CCCCceecH
Q 047992 496 FYPNCVTILSVLPACAYLV-ASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGN--IVYSRTIFDGM--SSKDIITWN 570 (868)
Q Consensus 496 ~~p~~~t~~~ll~a~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~--~~~A~~~f~~~--~~~d~~~~~ 570 (868)
+..|...+..++....... +...-..+...+.. .++.|. ++.+..+...+ .+.+...|.
T Consensus 14 V~Yd~~~~~~l~~~L~~~~l~~~~R~~ll~D~~a----------------l~~~g~~~~~~~l~l~~~~~~~E~~~~vw~ 77 (324)
T PF11838_consen 14 VNYDEENWDALIKQLQSNHLSPLDRAQLLDDLFA----------------LARAGRLSYSDFLDLLEYLLPNETDYVVWS 77 (324)
T ss_dssp EEECTTHHHHHHHHHHHHGS-HHHHHHHHHHHHH----------------HHHTTSS-HHHHHHHHGGG-GT--SHHHHH
T ss_pred EeCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----------------HHHcCCCCHHHHHHHHHHhccCCCchHHHH
Q ss_pred HHHHHHHhcC-----ChHHHHHHHHH---------HHHCCCCCC--HHHHHHHHH------HhhccCChHHHHHHHHHhh
Q 047992 571 SLICGYVLHG-----FWHAALDLFDQ---------MKSFGLKPN--RGTFLSIIL------AHSLAGMVDLGKKVFCSIT 628 (868)
Q Consensus 571 ~li~~~~~~g-----~~~~A~~l~~~---------m~~~g~~p~--~~t~~~ll~------a~~~~g~~~~a~~~~~~m~ 628 (868)
.++..+..-. ..+.....|+. +.+.|..+. .......+. +|.+.+-++++.+.|+...
T Consensus 78 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~ 157 (324)
T PF11838_consen 78 TALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRALLLSLACGDPECVAEARELFKAWL 157 (324)
T ss_dssp HHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHh
Q ss_pred hhcCC---CCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC-CCCch
Q 047992 629 ECYQI---IPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLE-PGDVL 704 (868)
Q Consensus 629 ~~~~~---~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~-p~~~~ 704 (868)
..-.- ..+.+....+.....+.|.-++-..+++.....++...-..++.|.....|.+.-.++.+.++.-+ -....
T Consensus 158 ~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d 237 (324)
T PF11838_consen 158 DGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQD 237 (324)
T ss_dssp HTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTT
T ss_pred cCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHH
Q ss_pred hHHHHHHHH
Q 047992 705 IQRLILQIY 713 (868)
Q Consensus 705 ~~~~l~~~y 713 (868)
.+..+..++
T Consensus 238 ~~~~~~~~~ 246 (324)
T PF11838_consen 238 IRYVLAGLA 246 (324)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
No 472
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=26.77 E-value=81 Score=32.38 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCccC
Q 047992 296 WTCMISGFAQNGRTSQALDLFKEMSFVGVMP 326 (868)
Q Consensus 296 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 326 (868)
||..|...++.||+++|+.++++..+.|+.-
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 3455555555555555555555555555443
No 473
>PF14376 Haem_bd: Haem-binding domain
Probab=26.63 E-value=23 Score=31.89 Aligned_cols=8 Identities=38% Similarity=1.140 Sum_probs=7.0
Q ss_pred ccCCcchh
Q 047992 826 RMCVHCHE 833 (868)
Q Consensus 826 r~c~dch~ 833 (868)
+-|.||||
T Consensus 42 ~~CydCHS 49 (137)
T PF14376_consen 42 NSCYDCHS 49 (137)
T ss_pred ccccccCC
Confidence 57999997
No 474
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=26.46 E-value=31 Score=34.39 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=13.2
Q ss_pred ccCCcchhhhHHHHhh
Q 047992 826 RMCVHCHETAKYVSMM 841 (868)
Q Consensus 826 r~c~dch~~~k~~s~~ 841 (868)
-+|+|||+.+|.+=.-
T Consensus 253 EtC~~C~sYlKilyqe 268 (308)
T COG3058 253 ETCGDCNSYLKILYQE 268 (308)
T ss_pred hcCCcHHHHHHHHHHh
Confidence 4799999999987543
No 475
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=25.97 E-value=4.2e+02 Score=27.56 Aligned_cols=115 Identities=15% Similarity=0.033 Sum_probs=56.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhc
Q 047992 574 CGYVLHGFWHAALDLFDQMKSFGLKPNRG---TFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRS 650 (868)
Q Consensus 574 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~ 650 (868)
..-.+.|+..+|++.|+.+.+. .|-.. ..-.++.+|....-+.+...++-.--+ --.|...+ -|.-.++.
T Consensus 283 MCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDd--islPkSA~-icYTaALL-- 355 (556)
T KOG3807|consen 283 MCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD--ISLPKSAA-ICYTAALL-- 355 (556)
T ss_pred HHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--ccCcchHH-HHHHHHHH--
Confidence 3334568888888888887663 33111 122355566554433333333322111 01122211 12222222
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHH
Q 047992 651 GKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQR 707 (868)
Q Consensus 651 g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~ 707 (868)
++..+-++ +.||...-+.|-.|- -.|.++..++.|.+|.-+.+..
T Consensus 356 ----K~RAVa~k--Fspd~asrRGLS~AE------~~AvEAihRAvEFNPHVPkYLL 400 (556)
T KOG3807|consen 356 ----KTRAVSEK--FSPETASRRGLSTAE------INAVEAIHRAVEFNPHVPKYLL 400 (556)
T ss_pred ----HHHHHHhh--cCchhhhhccccHHH------HHHHHHHHHHhhcCCCCcHHHH
Confidence 22233333 356666544444432 3477888899999997665543
No 476
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=25.32 E-value=5.3e+02 Score=27.71 Aligned_cols=123 Identities=11% Similarity=0.142 Sum_probs=89.5
Q ss_pred HHHHhhhhcCChHHHHHHHHhCCCCCC------HHH--HHHHHHHHHhcCCHHHHHHHHHHHhcc---CCC----CchhH
Q 047992 642 AMIDLYGRSGKLEEAMEFIEDMPIEPD------SSI--WEALLTACRIHGNIDLAVLAIERLFDL---EPG----DVLIQ 706 (868)
Q Consensus 642 ~lvd~l~r~g~~~eA~~~i~~~~~~p~------~~~--w~~ll~a~~~~~~~~~a~~~~~~~~~l---~p~----~~~~~ 706 (868)
.+++.+-..|++++|.+++...|++.= ..+ .---+..|...+|+-.|....+++..- +|+ --.+|
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY 215 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYY 215 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHH
Confidence 456778889999999999998875421 111 111245788899999999998887542 222 12568
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHhcCCCCCCcccEEEEcCEEEEEEeCCCCCCchHH
Q 047992 707 RLILQIYAICGKPEDALKVRKLERENTRRNSFGQCWIEVKNLVYTFVTGGWSESYSDL 764 (868)
Q Consensus 707 ~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~ 764 (868)
.++..++...+.+=++.+.++..-+-|..|.-.--|+++=..+-.|+.-...-+.-..
T Consensus 216 ~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~LAp~dneQsd 273 (439)
T KOG1498|consen 216 ELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCVLAPHDNEQSD 273 (439)
T ss_pred HHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEeecCCCcHHHH
Confidence 8899999999999999999999988888777656799888777778765544444333
No 477
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=25.03 E-value=4.3e+02 Score=23.34 Aligned_cols=61 Identities=13% Similarity=0.040 Sum_probs=41.1
Q ss_pred ChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047992 636 MIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSS-IWEALLTACRIHGNIDLAVLAIERLF 696 (868)
Q Consensus 636 ~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~ 696 (868)
....-.++...|.=.|..++|.++++....-++.. .-.-+|..|+...+-++-..+-++.+
T Consensus 65 kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~l 126 (127)
T PF04034_consen 65 KLSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEYL 126 (127)
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 33344455666677888888888888887766665 44567888877777666655555443
No 478
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=24.84 E-value=1.3e+03 Score=27.91 Aligned_cols=84 Identities=10% Similarity=0.052 Sum_probs=39.4
Q ss_pred hcCChhHHHHHHhhc----CCCCce-------eHHHHHHHHH-hCCChhHHHHHHHHhHHC----CCCCCcchHHHHHHH
Q 047992 103 KCGCLDDAREVFEDM----RERNLY-------TWSAMIGAYS-RDQRWREVVELFFLMVQD----GLFPDDFLFPKILQA 166 (868)
Q Consensus 103 ~~g~~~~A~~~f~~~----~~~~~~-------~~~~li~~~~-~~g~~~~a~~l~~~m~~~----g~~p~~~t~~~ll~~ 166 (868)
...++++|..+.++. +.|+.. .|+++-.... ..|+++++..+-+..... -..+....+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 345666666655543 233222 3555544332 356666666666554432 111222233333344
Q ss_pred hhCCCChHHHHHHHHHHHHh
Q 047992 167 CGNCGDFEAGKLMHSLVIKL 186 (868)
Q Consensus 167 ~~~~~~~~~a~~~~~~~~~~ 186 (868)
..-.|+++.|..+.+...+.
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 507 AHIRGELTQALALMQQAEQM 526 (894)
T ss_pred HHHhchHHHHHHHHHHHHHH
Confidence 44455666655555554443
No 479
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=24.70 E-value=7.7e+02 Score=25.26 Aligned_cols=81 Identities=11% Similarity=0.020 Sum_probs=38.3
Q ss_pred cCCCHHHHHHHHHhcCCC-CeehHHHHHHHHHhc----CChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHh----cCCH
Q 047992 375 KCEELEAAERVFDMIKDK-DVYSWNSMIAGYCQA----GYCGKAYELFIKMQESDVPPNVITWNVLISGYIQ----NGNE 445 (868)
Q Consensus 375 ~~g~~~~A~~vf~~~~~~-~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~ 445 (868)
..+.+..+...+...... +......+...|... .+..+|.+.|..+.+.|. ......|..+|.. ..+.
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~d~ 129 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPLDL 129 (292)
T ss_pred ccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcccCH
Confidence 345667777777666542 222333333333322 335566666665555542 2222334344433 2245
Q ss_pred HHHHHHHHhcccC
Q 047992 446 DEAVDLFQRMGKN 458 (868)
Q Consensus 446 ~~A~~~f~~m~~~ 458 (868)
.+|..+|+..-+.
T Consensus 130 ~~A~~~~~~Aa~~ 142 (292)
T COG0790 130 VKALKYYEKAAKL 142 (292)
T ss_pred HHHHHHHHHHHHc
Confidence 5555555555443
No 480
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=23.91 E-value=1.9e+02 Score=25.55 Aligned_cols=68 Identities=19% Similarity=0.308 Sum_probs=45.3
Q ss_pred HHHHHHHHhC-CCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHhc--cCCCCchhHHHHHHHHhhcCCChhHHHHHH
Q 047992 654 EEAMEFIEDM-PIEPDSS---IWEALLTACRIHGNIDLAVLAIERLFD--LEPGDVLIQRLILQIYAICGKPEDALKVRK 727 (868)
Q Consensus 654 ~eA~~~i~~~-~~~p~~~---~w~~ll~a~~~~~~~~~a~~~~~~~~~--l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 727 (868)
+.+...+... ..+.|+- +|-.++..| ++ ...++..+.. +.-..+..|...+..+...|+|.+|.+|.+
T Consensus 50 erc~~~f~~~~~YknD~RyLkiWi~ya~~~---~d---p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 50 ERCIRYFEDDERYKNDPRYLKIWLKYADNC---DE---PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHhc---CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3344444443 2344443 666666654 33 4556666654 556778889999999999999999999875
No 481
>PRK09169 hypothetical protein; Validated
Probab=23.90 E-value=2e+03 Score=29.82 Aligned_cols=469 Identities=8% Similarity=0.016 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCc-----cChhhHHHHHHHHHhcCChHHHHHHHHHH-------HhcCCCCCe
Q 047992 226 WNSMISGYFQIGENDEAHRLFDKMCREEIK-----LGVVTFNILIRSYNQLGQCDVAMEMVKRM-------ESLGITPDV 293 (868)
Q Consensus 226 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~g~~p~~ 293 (868)
+..+...+++.-+.....+.+..+...-.. .+...+..++++++|-.+.+.+...-+.+ ...-...|.
T Consensus 125 ~a~l~n~lsK~~d~~aC~~a~a~ia~q~~~~~~~~l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~al~~ 204 (2316)
T PRK09169 125 LAHLGNKLSKYPDRPACMAAIAWIAGQLLDALREALDAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQAMDA 204 (2316)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHhcch
Q ss_pred eeHHHHHHHHHhcCChhHHHHHHHHH-------HhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHh-------CC
Q 047992 294 FTWTCMISGFAQNGRTSQALDLFKEM-------SFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKM-------GF 359 (868)
Q Consensus 294 ~~~~~li~~~~~~g~~~~A~~l~~~m-------~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-------g~ 359 (868)
......++++.|.-+...+...-..+ ...-...+......+|+++++-.+-+.+.+.-..+... ..
T Consensus 205 q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr~ 284 (2316)
T PRK09169 205 QEVANALNALSKWPDSPRCRNAAERLAERLADEPGLLQSLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPGLRL 284 (2316)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHHHhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhhh
Q ss_pred CCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCC-----------CeehHHHHHHHHHhcCChhH----HHHHHHHhHhCC
Q 047992 360 TDDVLVGNSLINMYSKCEELEAAERVFDMIKDK-----------DVYSWNSMIAGYCQAGYCGK----AYELFIKMQESD 424 (868)
Q Consensus 360 ~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~-----------~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g 424 (868)
..+..-....+++++|..+-+.+...-..+-.+ +..-....+.++++-.+.+. +..+-..+...-
T Consensus 285 ~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~~~ 364 (2316)
T PRK09169 285 ALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERGLLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLARDA 364 (2316)
T ss_pred hcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhCh
Q ss_pred ---CCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHH
Q 047992 425 ---VPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCV 501 (868)
Q Consensus 425 ---~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 501 (868)
-.-|..-....+.+++|.++-+.....-+.+ |..+-++..... .-|..
T Consensus 365 ~l~~~~npQelANaLnALSKwp~~~~cr~AA~aL----------------------------A~rL~~~~~l~~-~fnaQ 415 (2316)
T PRK09169 365 GLRRALNAQELANALNALSKWPDEEACRAAAEAL----------------------------AARLARDAGLRA-ALNAQ 415 (2316)
T ss_pred hhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHH----------------------------HHHHHhchhhhh-hcChH
Q ss_pred hHHHHHHHHhchhchHHHHHHHHHHHHh-------CCCCChhHHHHHHHHHHhcCCHH----HHHHHHhcCCCC------
Q 047992 502 TILSVLPACAYLVASNKVKEIHGCVLRR-------SLESSLPVMNSLIDTYAKSGNIV----YSRTIFDGMSSK------ 564 (868)
Q Consensus 502 t~~~ll~a~~~~~~~~~~~~i~~~~~~~-------~~~~~~~~~~~Li~~y~k~g~~~----~A~~~f~~~~~~------ 564 (868)
-+..++.||++...-+...+....+... .-..++.-....+.+++|.++-+ .|..+...+...
T Consensus 416 ~vANaLnALsKWp~~~~c~~aa~aLA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~rl~~~~~l~~a 495 (2316)
T PRK09169 416 GVANALNALSKWPGAEACRQAALALAARLAADARLRNALSAQELANALNALSKWPDEAACRRAAEALAARLAGDAELRQA 495 (2316)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcChhhhhh
Q ss_pred -CceecHHHHHHHHhcCChHHHHHHHHHH-------HHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCC-
Q 047992 565 -DIITWNSLICGYVLHGFWHAALDLFDQM-------KSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIP- 635 (868)
Q Consensus 565 -d~~~~~~li~~~~~~g~~~~A~~l~~~m-------~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p- 635 (868)
+.--....+.++++-+..+.+...-+.+ -..--.-|..-+...|.|+++-++.+.....-..+.....-.|
T Consensus 496 f~~Q~lAN~LnALsKwp~~~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~~la~~~~ 575 (2316)
T PRK09169 496 LDAQGLANALNALSKWPDSDACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAARLARRPD 575 (2316)
T ss_pred cChHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhcChh
Q ss_pred -----ChhHHHHHHHhhhhcCCh----HHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc---
Q 047992 636 -----MIEHYSAMIDLYGRSGKL----EEAMEFIEDMPIEP------DSSIWEALLTACRIHGNIDLAVLAIERLFD--- 697 (868)
Q Consensus 636 -----~~~~y~~lvd~l~r~g~~----~eA~~~i~~~~~~p------~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~--- 697 (868)
+....+..+..|.+-+.- +-|..+.....-+| |+--|.+++++..+-.+.+....+++.+-+
T Consensus 576 l~~~~naQ~LAN~LnALSKWP~~~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr~Aa~aLA~~L~ 655 (2316)
T PRK09169 576 LRSALNAQGLANLLNALSKWPDEDACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCRQAAEALAARLL 655 (2316)
T ss_pred hhhccCHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHh
Q ss_pred --------cCCCCchhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 698 --------LEPGDVLIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 698 --------l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
++|.+ |+|+.-..-+|.+....++.+
T Consensus 656 ~~~~l~~af~aQ~------LaN~LnALSKWp~~~~c~~Aa 689 (2316)
T PRK09169 656 RDAGLPRAFDAQG------LANALNALSKWPDEAACRAAA 689 (2316)
T ss_pred hcchhHHhcCcHH------HHHHHHHHHhCCCcHHHHHHH
No 482
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.86 E-value=2e+02 Score=34.09 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=39.9
Q ss_pred HHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh
Q 047992 658 EFIEDMPIEPDSS--IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLI 705 (868)
Q Consensus 658 ~~i~~~~~~p~~~--~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 705 (868)
.+|...+++|-.. +..+.++.+++++|+..|...+.+++++.|..+.+
T Consensus 1071 aYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A 1120 (1202)
T KOG0292|consen 1071 AYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVA 1120 (1202)
T ss_pred HHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHH
Confidence 4566678888655 66788899999999999999999999999976543
No 483
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=23.40 E-value=1.2e+02 Score=22.91 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=18.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 047992 570 NSLICGYVLHGFWHAALDLFDQMKS 594 (868)
Q Consensus 570 ~~li~~~~~~g~~~~A~~l~~~m~~ 594 (868)
-.+|.||.+.|++++|.+..+++..
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4567888888888888888877764
No 484
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=23.27 E-value=3.5e+02 Score=27.99 Aligned_cols=57 Identities=12% Similarity=0.095 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHH
Q 047992 243 HRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFA 304 (868)
Q Consensus 243 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 304 (868)
.++++.|.+.++.|.-..+.-+.-.+++.=.+.+.+.+++.+.. |..-|..++..|+
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHH
Confidence 45666666777777777777666677777777777777777665 3333555555554
No 485
>COG4855 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.76 E-value=26 Score=26.16 Aligned_cols=10 Identities=60% Similarity=1.404 Sum_probs=8.7
Q ss_pred cCCcchhhhH
Q 047992 827 MCVHCHETAK 836 (868)
Q Consensus 827 ~c~dch~~~k 836 (868)
+|.-||+++|
T Consensus 65 lC~~C~~a~~ 74 (76)
T COG4855 65 LCVECHEAIK 74 (76)
T ss_pred eeHHHHHHhh
Confidence 6999999887
No 486
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=21.61 E-value=2.3e+02 Score=26.61 Aligned_cols=48 Identities=17% Similarity=0.074 Sum_probs=28.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChH
Q 047992 571 SLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVD 618 (868)
Q Consensus 571 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 618 (868)
+++..+...+..-.|.++++++.+.+..++..|-.-.|..+...|.+.
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 344444444455566677777776666666666666666666665543
No 487
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=21.24 E-value=5.2e+02 Score=28.53 Aligned_cols=47 Identities=15% Similarity=0.084 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 047992 342 KALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKD 391 (868)
Q Consensus 342 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~ 391 (868)
..+++-.+++..+.+.| ...+....|+.|.+.+++++|..-++.-.+
T Consensus 68 ~~~~e~i~lL~~l~~~g---~ad~lp~TIDSyTR~n~y~~A~~~l~~s~~ 114 (480)
T TIGR01503 68 ALLDEHIELLRTLQEEG---GADFLPSTIDAYTRQNRYDEAAVGIKESIK 114 (480)
T ss_pred CcHHHHHHHHHHHHHcc---CCCccceeeecccccccHHHHHHHHHhhhh
Confidence 45566677777777665 223556678899999999999888876543
No 488
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=21.23 E-value=1.8e+02 Score=18.64 Aligned_cols=27 Identities=22% Similarity=0.063 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHHhccCCCCchhHHHHH
Q 047992 683 GNIDLAVLAIERLFDLEPGDVLIQRLIL 710 (868)
Q Consensus 683 ~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 710 (868)
+.++.|..++++.+..-|+ +.+|+-.+
T Consensus 1 kE~dRAR~IyeR~v~~hp~-~k~WikyA 27 (32)
T PF02184_consen 1 KEFDRARSIYERFVLVHPE-VKNWIKYA 27 (32)
T ss_pred ChHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 3578899999999888774 56665544
No 489
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=20.58 E-value=3.8e+02 Score=21.70 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=29.0
Q ss_pred HHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHH
Q 047992 203 VKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEA 242 (868)
Q Consensus 203 ~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A 242 (868)
+..-+.+.|.++++.++.+...+|.++..++-..|...-|
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3445567788888888888888888888888777655443
No 490
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.55 E-value=7.9e+02 Score=27.95 Aligned_cols=102 Identities=21% Similarity=0.289 Sum_probs=0.0
Q ss_pred hhccCChHHHHHHHHHhhhhcCCCCC------------hhHHHHHHHhhhhcCChHHHHHHHHhC------CCCC-----
Q 047992 611 HSLAGMVDLGKKVFCSITECYQIIPM------------IEHYSAMIDLYGRSGKLEEAMEFIEDM------PIEP----- 667 (868)
Q Consensus 611 ~~~~g~~~~a~~~~~~m~~~~~~~p~------------~~~y~~lvd~l~r~g~~~eA~~~i~~~------~~~p----- 667 (868)
+.|+.-++++..-|...+. -..|+ ++..-.|.+++-..|+.+-|-++|++. ...|
T Consensus 248 ~~hs~sYeqaq~~F~~av~--~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~ 325 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVI--VHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPF 325 (665)
T ss_pred eecchHHHHHHHHHHHHHh--hcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccc
Q ss_pred ------------CHHHHHHH---HHHHHhcCCHHHHHHHHHHHhccCCC-CchhHHHHHHHHh
Q 047992 668 ------------DSSIWEAL---LTACRIHGNIDLAVLAIERLFDLEPG-DVLIQRLILQIYA 714 (868)
Q Consensus 668 ------------~~~~w~~l---l~a~~~~~~~~~a~~~~~~~~~l~p~-~~~~~~~l~~~y~ 714 (868)
|-..+-+| +......|-..-|....+-++.++|. ||-....+.++|+
T Consensus 326 sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~A 388 (665)
T KOG2422|consen 326 SGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYA 388 (665)
T ss_pred cccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHH
No 491
>PRK10220 hypothetical protein; Provisional
Probab=20.53 E-value=36 Score=28.60 Aligned_cols=30 Identities=20% Similarity=0.407 Sum_probs=18.2
Q ss_pred ccccCCcc-hhhhHHHHhhhceEEEEecCCc
Q 047992 824 NIRMCVHC-HETAKYVSMMHHCEIFLADSKC 853 (868)
Q Consensus 824 nlr~c~dc-h~~~k~~s~~~~r~i~~rd~~r 853 (868)
++-||.+| |+|..--.....-.++|||+|-
T Consensus 19 ~~~vCpeC~hEW~~~~~~~~~~~~~vkDsnG 49 (111)
T PRK10220 19 GMYICPECAHEWNDAEPAQESDELIVKDANG 49 (111)
T ss_pred CeEECCcccCcCCccccccccCCceEEcCCC
Confidence 57899999 6665442112222357899874
Done!