Query 047992
Match_columns 868
No_of_seqs 889 out of 5539
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 08:41:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047992.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047992hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.7E-41 9.2E-46 394.7 34.1 522 99-715 61-596 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.2E-39 4.1E-44 380.7 31.1 499 201-732 62-579 (597)
3 1w3b_A UDP-N-acetylglucosamine 99.9 8.3E-25 2.8E-29 240.2 33.2 335 339-718 44-388 (388)
4 4g26_A Pentatricopeptide repea 99.9 3.9E-26 1.3E-30 255.2 21.8 188 124-342 28-224 (501)
5 4g26_A Pentatricopeptide repea 99.9 1.8E-26 6.2E-31 257.9 18.9 215 140-376 8-223 (501)
6 1w3b_A UDP-N-acetylglucosamine 99.9 1.8E-23 6.3E-28 229.4 32.4 323 365-731 35-367 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 5.7E-24 2E-28 238.5 23.8 348 362-738 25-412 (450)
8 2gw1_A Mitochondrial precursor 99.9 1.2E-21 4.2E-26 223.4 33.6 444 224-712 7-492 (514)
9 2gw1_A Mitochondrial precursor 99.9 7.4E-21 2.5E-25 216.9 28.5 433 259-732 7-478 (514)
10 1xi4_A Clathrin heavy chain; a 99.9 1.4E-16 4.9E-21 187.1 61.5 313 369-724 1055-1376(1630)
11 3fp2_A TPR repeat-containing p 99.9 4.6E-20 1.6E-24 211.7 29.8 431 224-705 26-498 (537)
12 3fp2_A TPR repeat-containing p 99.9 3.6E-20 1.2E-24 212.6 27.8 421 192-668 25-494 (537)
13 2y4t_A DNAJ homolog subfamily 99.8 1.2E-19 4.2E-24 203.1 26.7 363 257-721 25-443 (450)
14 1xi4_A Clathrin heavy chain; a 99.8 4.7E-15 1.6E-19 174.5 55.4 507 160-727 988-1529(1630)
15 3ieg_A DNAJ homolog subfamily 99.8 1E-17 3.5E-22 180.8 27.9 311 397-715 6-352 (359)
16 3hym_B Cell division cycle pro 99.8 5.6E-17 1.9E-21 172.9 26.8 285 394-719 22-321 (330)
17 3ieg_A DNAJ homolog subfamily 99.7 1.8E-16 6.2E-21 171.0 25.4 295 430-732 4-335 (359)
18 1fch_A Peroxisomal targeting s 99.7 5.4E-17 1.9E-21 176.1 20.5 255 430-727 65-354 (368)
19 3hym_B Cell division cycle pro 99.7 2E-16 7E-21 168.5 23.9 262 426-729 19-296 (330)
20 1b89_A Protein (clathrin heavy 99.7 4.5E-16 1.6E-20 165.2 24.0 281 102-416 14-304 (449)
21 2ooe_A Cleavage stimulation fa 99.7 3E-15 1E-19 171.1 32.1 426 221-702 11-496 (530)
22 1b89_A Protein (clathrin heavy 99.7 2.2E-16 7.4E-21 167.7 18.9 379 270-693 15-412 (449)
23 2ooe_A Cleavage stimulation fa 99.7 2.4E-14 8.1E-19 163.6 34.6 209 518-732 256-492 (530)
24 3spa_A Mtrpol, DNA-directed RN 99.7 3.1E-17 1.1E-21 187.1 9.6 160 223-387 127-305 (1134)
25 4eqf_A PEX5-related protein; a 99.7 4E-16 1.4E-20 169.2 17.9 231 464-732 64-310 (365)
26 3mkr_A Coatomer subunit epsilo 99.7 2E-15 7E-20 157.2 21.9 181 511-729 76-261 (291)
27 2xm6_A Protein corresponding t 99.7 3.4E-14 1.2E-18 160.6 33.2 366 257-715 38-452 (490)
28 1fch_A Peroxisomal targeting s 99.7 1.9E-15 6.5E-20 163.9 20.6 255 440-732 36-314 (368)
29 4eqf_A PEX5-related protein; a 99.7 3E-16 1E-20 170.1 14.1 256 430-727 66-351 (365)
30 4g1t_A Interferon-induced prot 99.6 1.6E-14 5.5E-19 162.5 25.6 363 362-743 50-470 (472)
31 2xm6_A Protein corresponding t 99.6 3.2E-13 1.1E-17 152.5 34.9 350 362-733 38-433 (490)
32 3cv0_A Peroxisome targeting si 99.6 4.3E-15 1.5E-19 157.9 18.3 254 432-727 24-310 (327)
33 4g1t_A Interferon-induced prot 99.6 3.9E-14 1.3E-18 159.3 23.4 391 256-710 49-471 (472)
34 3spa_A Mtrpol, DNA-directed RN 99.6 7.8E-16 2.7E-20 175.7 9.1 132 255-386 124-259 (1134)
35 3cv0_A Peroxisome targeting si 99.6 8.5E-14 2.9E-18 147.8 21.1 263 396-701 23-318 (327)
36 2pl2_A Hypothetical conserved 99.5 1.2E-13 4.3E-18 137.0 16.6 191 532-727 2-209 (217)
37 3mkr_A Coatomer subunit epsilo 99.5 4.4E-13 1.5E-17 139.5 20.1 220 367-629 38-263 (291)
38 1xnf_A Lipoprotein NLPI; TPR, 99.5 9.4E-14 3.2E-18 143.5 13.8 242 441-726 17-269 (275)
39 3u4t_A TPR repeat-containing p 99.5 5.1E-13 1.8E-17 137.7 18.5 254 397-718 6-270 (272)
40 3uq3_A Heat shock protein STI1 99.5 1.2E-12 4E-17 133.6 19.9 188 533-731 36-235 (258)
41 3uq3_A Heat shock protein STI1 99.5 1.2E-12 4E-17 133.6 17.8 237 431-712 7-256 (258)
42 2ho1_A Type 4 fimbrial biogene 99.4 3.9E-12 1.3E-16 129.4 18.6 196 535-733 37-239 (252)
43 2vq2_A PILW, putative fimbrial 99.4 6.5E-12 2.2E-16 125.0 19.6 196 534-732 7-211 (225)
44 2h6f_A Protein farnesyltransfe 99.4 1.5E-12 5.3E-17 140.1 15.4 178 534-716 165-366 (382)
45 2ho1_A Type 4 fimbrial biogene 99.4 1.3E-11 4.3E-16 125.6 21.0 207 465-709 37-249 (252)
46 2q7f_A YRRB protein; TPR, prot 99.4 2.6E-12 8.9E-17 129.8 15.5 214 464-717 22-241 (243)
47 2vq2_A PILW, putative fimbrial 99.4 8.2E-12 2.8E-16 124.2 18.5 209 464-710 7-223 (225)
48 2q7f_A YRRB protein; TPR, prot 99.4 4.3E-12 1.5E-16 128.1 14.3 196 533-732 21-222 (243)
49 3u4t_A TPR repeat-containing p 99.4 4.4E-11 1.5E-15 123.1 21.7 227 364-629 4-249 (272)
50 3e4b_A ALGK; tetratricopeptide 99.3 4.5E-11 1.5E-15 132.8 22.0 370 230-662 10-417 (452)
51 2pl2_A Hypothetical conserved 99.3 1.1E-11 3.9E-16 122.8 15.0 195 426-662 2-210 (217)
52 3e4b_A ALGK; tetratricopeptide 99.3 5.1E-11 1.7E-15 132.4 21.8 342 369-733 9-388 (452)
53 2h6f_A Protein farnesyltransfe 99.3 8.1E-12 2.8E-16 134.4 14.4 190 534-729 130-344 (382)
54 4e6h_A MRNA 3'-END-processing 99.3 1.4E-09 4.9E-14 124.8 33.4 218 483-705 327-577 (679)
55 3vtx_A MAMA; tetratricopeptide 99.3 3.7E-11 1.3E-15 115.5 16.8 158 568-729 7-167 (184)
56 4abn_A Tetratricopeptide repea 99.3 7E-12 2.4E-16 140.3 12.7 190 533-726 100-315 (474)
57 3sf4_A G-protein-signaling mod 99.3 3.2E-12 1.1E-16 140.2 9.3 294 395-721 10-365 (406)
58 1ouv_A Conserved hypothetical 99.3 6.1E-10 2.1E-14 114.7 25.8 223 464-733 5-252 (273)
59 1ouv_A Conserved hypothetical 99.3 1.9E-10 6.6E-15 118.5 21.4 228 428-704 5-257 (273)
60 1xnf_A Lipoprotein NLPI; TPR, 99.3 1.9E-10 6.3E-15 118.5 21.0 237 206-452 19-269 (275)
61 3ro2_A PINS homolog, G-protein 99.3 5.5E-11 1.9E-15 126.2 16.8 196 536-731 84-331 (338)
62 3vtx_A MAMA; tetratricopeptide 99.3 2.8E-11 9.7E-16 116.4 13.1 167 534-704 4-176 (184)
63 3sf4_A G-protein-signaling mod 99.3 2.6E-11 8.9E-16 132.9 14.0 268 430-730 10-334 (406)
64 4gyw_A UDP-N-acetylglucosamine 99.3 3E-11 1E-15 140.6 14.8 159 566-729 9-171 (723)
65 4a1s_A PINS, partner of inscut 99.3 2.1E-11 7.3E-16 134.0 12.7 268 431-731 50-371 (411)
66 2ond_A Cleavage stimulation fa 99.3 5.9E-10 2E-14 117.1 23.2 168 534-705 98-277 (308)
67 4i17_A Hypothetical protein; T 99.2 1.9E-10 6.5E-15 114.9 17.2 180 534-715 6-226 (228)
68 3ro2_A PINS homolog, G-protein 99.2 3.7E-11 1.3E-15 127.5 12.2 270 399-701 10-335 (338)
69 4e6h_A MRNA 3'-END-processing 99.2 1.2E-08 4.2E-13 117.1 32.8 147 138-286 48-222 (679)
70 4a1s_A PINS, partner of inscut 99.2 7.2E-11 2.5E-15 129.8 12.6 274 396-701 50-375 (411)
71 2ond_A Cleavage stimulation fa 99.2 1E-09 3.6E-14 115.2 20.3 211 518-733 34-271 (308)
72 3nf1_A KLC 1, kinesin light ch 99.2 3.5E-11 1.2E-15 126.4 8.6 166 535-700 111-309 (311)
73 3as5_A MAMA; tetratricopeptide 99.1 6.9E-10 2.4E-14 106.2 15.2 159 536-730 9-171 (186)
74 3as5_A MAMA; tetratricopeptide 99.1 1.2E-09 4E-14 104.6 16.0 170 501-707 9-182 (186)
75 3nf1_A KLC 1, kinesin light ch 99.1 3.7E-10 1.3E-14 118.5 13.1 231 500-730 27-305 (311)
76 3ulq_A Response regulator aspa 99.1 1.4E-09 4.9E-14 118.1 17.6 161 537-697 186-367 (383)
77 4abn_A Tetratricopeptide repea 99.1 7.2E-10 2.5E-14 123.9 13.3 177 551-732 84-287 (474)
78 4i17_A Hypothetical protein; T 99.0 2.6E-09 9E-14 106.5 14.6 153 564-719 5-169 (228)
79 3q15_A PSP28, response regulat 99.0 6.6E-09 2.3E-13 112.6 18.1 232 437-698 109-365 (378)
80 1hz4_A MALT regulatory protein 99.0 4.4E-08 1.5E-12 105.8 24.6 261 436-729 21-319 (373)
81 3ulq_A Response regulator aspa 99.0 1.9E-09 6.6E-14 117.1 13.2 195 535-730 143-366 (383)
82 4gyw_A UDP-N-acetylglucosamine 99.0 1.5E-09 5.1E-14 126.3 11.4 163 534-701 8-177 (723)
83 1hz4_A MALT regulatory protein 98.9 7.6E-08 2.6E-12 104.0 23.7 268 402-700 22-324 (373)
84 3edt_B KLC 2, kinesin light ch 98.9 3.4E-09 1.2E-13 109.1 12.0 218 513-730 14-279 (283)
85 4ga2_A E3 SUMO-protein ligase 98.9 7.2E-10 2.5E-14 102.3 5.5 111 605-718 35-149 (150)
86 3qky_A Outer membrane assembly 98.9 1.8E-08 6.3E-13 102.7 15.7 186 534-721 14-250 (261)
87 1qqe_A Vesicular transport pro 98.9 2.3E-08 8E-13 103.9 15.3 169 536-706 78-277 (292)
88 2yhc_A BAMD, UPF0169 lipoprote 98.9 3.6E-08 1.2E-12 98.0 15.7 182 535-735 4-216 (225)
89 2pzi_A Probable serine/threoni 98.8 6.1E-09 2.1E-13 121.8 10.3 167 546-718 402-583 (681)
90 1qqe_A Vesicular transport pro 98.8 2.2E-08 7.5E-13 104.0 13.3 184 542-727 44-264 (292)
91 3qou_A Protein YBBN; thioredox 98.8 3.2E-08 1.1E-12 102.4 14.4 160 562-726 113-278 (287)
92 3q15_A PSP28, response regulat 98.8 4.8E-08 1.6E-12 105.8 15.5 218 511-729 112-362 (378)
93 3edt_B KLC 2, kinesin light ch 98.8 9.6E-08 3.3E-12 98.1 16.9 166 534-699 84-282 (283)
94 3qky_A Outer membrane assembly 98.8 6.2E-08 2.1E-12 98.8 15.2 168 563-732 12-224 (261)
95 3mv2_B Coatomer subunit epsilo 98.8 6E-07 2E-11 91.4 21.8 78 652-731 193-281 (310)
96 2fo7_A Synthetic consensus TPR 98.8 1.1E-07 3.8E-12 85.0 14.3 126 568-729 3-129 (136)
97 2fo7_A Synthetic consensus TPR 98.7 9.8E-08 3.4E-12 85.3 13.3 95 639-733 3-99 (136)
98 2r5s_A Uncharacterized protein 98.7 6.8E-08 2.3E-12 91.7 12.2 74 655-728 92-169 (176)
99 2pzi_A Probable serine/threoni 98.7 2.6E-07 8.9E-12 108.0 18.4 194 511-710 402-614 (681)
100 4ga2_A E3 SUMO-protein ligase 98.7 2E-08 6.8E-13 92.5 6.7 114 609-725 5-121 (150)
101 3mv2_B Coatomer subunit epsilo 98.6 5.2E-07 1.8E-11 91.8 15.7 181 520-708 86-292 (310)
102 2vsy_A XCC0866; transferase, g 98.6 2.1E-07 7E-12 106.9 14.2 159 548-710 2-169 (568)
103 4gco_A Protein STI-1; structur 98.6 1.3E-07 4.4E-12 84.0 9.6 108 603-712 15-124 (126)
104 2vsy_A XCC0866; transferase, g 98.6 2.1E-07 7.3E-12 106.8 14.1 149 579-732 2-157 (568)
105 2uy1_A Cleavage stimulation fa 98.6 1.6E-05 5.5E-10 88.5 28.7 204 381-594 197-412 (493)
106 3gyz_A Chaperone protein IPGC; 98.6 9.6E-08 3.3E-12 87.6 8.7 101 632-732 30-133 (151)
107 2yhc_A BAMD, UPF0169 lipoprote 98.6 4.9E-07 1.7E-11 89.7 14.4 185 501-705 5-220 (225)
108 3urz_A Uncharacterized protein 98.6 2E-07 6.9E-12 91.2 11.3 156 541-702 10-190 (208)
109 3rjv_A Putative SEL1 repeat pr 98.5 2.6E-06 8.8E-11 83.5 17.8 161 564-733 16-198 (212)
110 3dra_A Protein farnesyltransfe 98.5 3.8E-06 1.3E-10 86.5 19.2 208 518-731 51-286 (306)
111 2ifu_A Gamma-SNAP; membrane fu 98.5 1.2E-06 4.2E-11 91.4 15.9 221 477-725 3-254 (307)
112 2uy1_A Cleavage stimulation fa 98.5 4.2E-06 1.4E-10 93.3 20.7 390 236-697 7-412 (493)
113 2r5s_A Uncharacterized protein 98.5 6.8E-07 2.3E-11 84.7 11.4 154 538-697 9-172 (176)
114 2c2l_A CHIP, carboxy terminus 98.5 2.1E-07 7.1E-12 95.9 8.3 191 534-731 3-198 (281)
115 1hh8_A P67PHOX, NCF-2, neutrop 98.5 1.6E-06 5.5E-11 84.8 14.4 123 605-732 10-150 (213)
116 3qou_A Protein YBBN; thioredox 98.5 7E-07 2.4E-11 92.3 12.0 160 534-697 116-283 (287)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.5 2.2E-06 7.7E-11 83.8 14.9 146 538-704 9-156 (213)
118 2vgx_A Chaperone SYCD; alterna 98.5 3.3E-07 1.1E-11 84.0 8.1 95 637-731 21-117 (148)
119 1p5q_A FKBP52, FK506-binding p 98.5 6.2E-08 2.1E-12 102.7 3.6 142 566-729 147-291 (336)
120 4gco_A Protein STI-1; structur 98.4 1.1E-06 3.6E-11 78.0 10.5 99 633-731 8-109 (126)
121 1na0_A Designed protein CTPR3; 98.4 2.1E-06 7.2E-11 75.3 12.5 111 605-717 13-125 (125)
122 2vyi_A SGTA protein; chaperone 98.4 1.6E-06 5.4E-11 76.9 11.7 116 603-720 14-131 (131)
123 4f3v_A ESX-1 secretion system 98.4 6.8E-07 2.3E-11 89.8 9.9 197 547-775 18-253 (282)
124 2qfc_A PLCR protein; TPR, HTH, 98.4 3.3E-06 1.1E-10 87.5 15.4 157 568-724 77-258 (293)
125 2lni_A Stress-induced-phosphop 98.4 2.2E-06 7.5E-11 76.3 12.3 116 566-718 16-133 (133)
126 2ifu_A Gamma-SNAP; membrane fu 98.4 8.9E-07 3E-11 92.5 11.0 197 512-730 3-222 (307)
127 4f3v_A ESX-1 secretion system 98.4 8.9E-07 3.1E-11 88.9 10.0 136 572-712 108-250 (282)
128 3dra_A Protein farnesyltransfe 98.4 1.5E-05 5.3E-10 81.9 19.4 160 549-712 124-302 (306)
129 3u3w_A Transcriptional activat 98.4 2.8E-05 9.6E-10 80.4 21.6 158 572-729 81-263 (293)
130 2xcb_A PCRH, regulatory protei 98.3 1.8E-06 6.3E-11 78.3 10.3 93 639-731 20-114 (142)
131 1a17_A Serine/threonine protei 98.3 3.6E-06 1.2E-10 78.4 12.5 119 610-730 22-144 (166)
132 3urz_A Uncharacterized protein 98.3 2.9E-06 9.9E-11 82.8 11.6 181 470-677 9-198 (208)
133 1hxi_A PEX5, peroxisome target 98.3 1.3E-06 4.4E-11 76.8 7.6 92 639-730 19-112 (121)
134 2vgx_A Chaperone SYCD; alterna 98.3 7.8E-07 2.7E-11 81.4 6.3 112 597-710 16-130 (148)
135 3gyz_A Chaperone protein IPGC; 98.3 1.2E-06 4.2E-11 80.1 7.2 95 606-703 41-138 (151)
136 3upv_A Heat shock protein STI1 98.3 4.2E-06 1.4E-10 74.0 10.5 92 639-730 6-99 (126)
137 2e2e_A Formate-dependent nitri 98.3 1.6E-06 5.5E-11 82.1 8.2 128 576-707 20-153 (177)
138 2e2e_A Formate-dependent nitri 98.2 4.3E-06 1.5E-10 79.1 10.5 121 611-733 20-145 (177)
139 2kck_A TPR repeat; tetratricop 98.2 6.8E-06 2.3E-10 70.3 10.9 96 637-732 6-106 (112)
140 2fbn_A 70 kDa peptidylprolyl i 98.2 7.4E-07 2.5E-11 86.3 4.9 171 538-729 7-183 (198)
141 3u3w_A Transcriptional activat 98.2 9E-05 3.1E-09 76.5 21.0 159 541-699 81-267 (293)
142 1wao_1 Serine/threonine protei 98.2 1.8E-06 6.1E-11 96.1 8.2 200 569-775 9-238 (477)
143 3q49_B STIP1 homology and U bo 98.2 7.3E-06 2.5E-10 73.5 10.8 95 636-730 8-104 (137)
144 2qfc_A PLCR protein; TPR, HTH, 98.2 2.8E-05 9.7E-10 80.3 16.8 161 538-698 78-266 (293)
145 3rjv_A Putative SEL1 repeat pr 98.2 5.3E-05 1.8E-09 74.0 17.6 161 533-700 16-199 (212)
146 2xcb_A PCRH, regulatory protei 98.2 2.5E-06 8.5E-11 77.4 7.3 108 603-712 20-129 (142)
147 3gw4_A Uncharacterized protein 98.2 1.4E-05 4.6E-10 77.3 13.0 152 547-698 4-176 (203)
148 1elw_A TPR1-domain of HOP; HOP 98.2 1.8E-05 6.1E-10 68.4 12.2 102 610-713 13-116 (118)
149 3sz7_A HSC70 cochaperone (SGT) 98.2 5.9E-06 2E-10 77.0 9.6 107 602-710 12-120 (164)
150 1elw_A TPR1-domain of HOP; HOP 98.1 9.2E-06 3.1E-10 70.2 9.9 95 637-731 4-100 (118)
151 2dba_A Smooth muscle cell asso 98.1 2.4E-05 8.4E-10 70.9 13.2 118 565-716 27-146 (148)
152 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 7.9E-07 2.7E-11 98.5 3.6 93 637-729 317-412 (457)
153 1na0_A Designed protein CTPR3; 98.1 1.5E-05 5.1E-10 69.6 10.5 96 637-732 9-106 (125)
154 2lni_A Stress-induced-phosphop 98.1 1.4E-05 4.8E-10 70.9 10.2 97 636-732 15-113 (133)
155 3sz7_A HSC70 cochaperone (SGT) 98.1 1.2E-05 4.2E-10 74.8 9.9 92 568-663 13-105 (164)
156 2dba_A Smooth muscle cell asso 98.1 2.1E-05 7.2E-10 71.3 11.2 97 636-732 27-128 (148)
157 4gcn_A Protein STI-1; structur 98.1 5.2E-06 1.8E-10 73.6 6.8 91 639-729 10-109 (127)
158 3gw4_A Uncharacterized protein 98.1 4.3E-05 1.5E-09 73.7 13.9 156 534-701 25-199 (203)
159 3upv_A Heat shock protein STI1 98.1 1.3E-05 4.5E-10 70.7 9.3 77 638-714 39-123 (126)
160 1a17_A Serine/threonine protei 98.1 2E-05 6.8E-10 73.2 11.0 124 570-697 17-145 (166)
161 3dss_A Geranylgeranyl transfer 98.1 6.8E-05 2.3E-09 77.5 15.8 189 517-712 91-318 (331)
162 3q7a_A Farnesyltransferase alp 98.0 0.00014 4.8E-09 75.5 18.0 208 518-731 72-330 (349)
163 3k9i_A BH0479 protein; putativ 98.0 3.2E-06 1.1E-10 73.7 4.2 80 650-729 3-87 (117)
164 2vyi_A SGTA protein; chaperone 98.0 1.7E-05 5.8E-10 70.0 9.0 96 637-732 12-109 (131)
165 2hr2_A Hypothetical protein; a 98.0 9.7E-06 3.3E-10 73.4 7.0 117 568-710 13-143 (159)
166 1dce_A Protein (RAB geranylger 98.0 9E-05 3.1E-09 83.8 16.7 168 550-721 44-244 (567)
167 3rkv_A Putative peptidylprolyl 97.9 1.8E-05 6.3E-10 73.4 8.2 60 670-729 64-123 (162)
168 2hr2_A Hypothetical protein; a 97.9 2.3E-05 7.9E-10 70.9 8.0 61 670-730 58-129 (159)
169 2kck_A TPR repeat; tetratricop 97.9 3.8E-05 1.3E-09 65.5 9.3 103 564-703 4-111 (112)
170 1wao_1 Serine/threonine protei 97.9 1.2E-05 4.2E-10 89.3 7.6 116 609-727 14-134 (477)
171 2xev_A YBGF; tetratricopeptide 97.9 2E-05 6.7E-10 69.7 7.6 97 609-705 10-112 (129)
172 3q49_B STIP1 homology and U bo 97.9 4.4E-05 1.5E-09 68.2 9.5 108 602-711 10-124 (137)
173 3dss_A Geranylgeranyl transfer 97.9 0.00044 1.5E-08 71.4 18.0 155 551-711 90-278 (331)
174 2c2l_A CHIP, carboxy terminus 97.9 5.8E-05 2E-09 77.4 11.3 103 601-706 4-109 (281)
175 1elr_A TPR2A-domain of HOP; HO 97.9 3.2E-05 1.1E-09 68.2 8.1 114 568-716 6-125 (131)
176 2fbn_A 70 kDa peptidylprolyl i 97.9 1.3E-05 4.4E-10 77.4 5.9 116 511-629 15-150 (198)
177 3q7a_A Farnesyltransferase alp 97.9 0.00085 2.9E-08 69.6 19.7 173 536-712 124-346 (349)
178 2l6j_A TPR repeat-containing p 97.9 2.9E-05 1E-09 66.4 7.5 90 636-725 3-100 (111)
179 1hxi_A PEX5, peroxisome target 97.9 3.2E-05 1.1E-09 67.7 7.7 66 638-703 52-119 (121)
180 1elr_A TPR2A-domain of HOP; HO 97.8 3.8E-05 1.3E-09 67.7 8.3 95 638-732 5-108 (131)
181 4gcn_A Protein STI-1; structur 97.8 6.9E-05 2.4E-09 66.2 9.9 60 568-629 10-70 (127)
182 2if4_A ATFKBP42; FKBP-like, al 97.8 2.9E-05 9.9E-10 82.0 8.7 145 568-732 181-328 (338)
183 1p5q_A FKBP52, FK506-binding p 97.8 5.1E-05 1.7E-09 80.1 10.5 94 534-629 146-258 (336)
184 4b4t_Q 26S proteasome regulato 97.8 0.0001 3.6E-09 80.8 13.4 186 543-728 12-241 (434)
185 2xev_A YBGF; tetratricopeptide 97.8 0.00018 6E-09 63.4 12.3 87 643-729 8-102 (129)
186 1ihg_A Cyclophilin 40; ppiase 97.8 3.2E-05 1.1E-09 82.7 8.4 135 568-724 225-362 (370)
187 3ro3_A PINS homolog, G-protein 97.8 8.6E-05 3E-09 68.1 10.0 130 568-729 11-155 (164)
188 3n71_A Histone lysine methyltr 97.8 7.5E-05 2.6E-09 82.3 10.8 127 612-738 320-470 (490)
189 3ro3_A PINS homolog, G-protein 97.8 8.4E-05 2.9E-09 68.2 9.6 137 535-700 9-160 (164)
190 2if4_A ATFKBP42; FKBP-like, al 97.8 3.4E-05 1.2E-09 81.5 7.6 110 603-729 181-290 (338)
191 3k9i_A BH0479 protein; putativ 97.8 2.3E-05 8E-10 68.1 5.2 105 615-719 4-111 (117)
192 1na3_A Designed protein CTPR2; 97.7 0.0001 3.6E-09 60.1 8.7 81 637-717 9-91 (91)
193 3rkv_A Putative peptidylprolyl 97.7 3.4E-05 1.2E-09 71.5 5.8 122 567-714 12-143 (162)
194 3ma5_A Tetratricopeptide repea 97.6 0.00014 4.8E-09 60.9 8.3 63 668-730 6-68 (100)
195 4b4t_Q 26S proteasome regulato 97.6 0.00046 1.6E-08 75.6 14.2 158 573-730 11-202 (434)
196 2kat_A Uncharacterized protein 97.6 8.4E-05 2.9E-09 64.2 6.3 75 656-730 4-80 (115)
197 3bee_A Putative YFRE protein; 97.6 0.00019 6.6E-09 58.9 7.8 69 666-734 3-74 (93)
198 1zu2_A Mitochondrial import re 97.5 6.5E-05 2.2E-09 67.8 4.3 105 577-709 13-131 (158)
199 1zu2_A Mitochondrial import re 97.4 3.7E-05 1.3E-09 69.4 1.8 85 648-732 13-120 (158)
200 1ihg_A Cyclophilin 40; ppiase 97.4 0.00027 9.4E-09 75.4 8.5 63 669-731 273-335 (370)
201 1kt0_A FKBP51, 51 kDa FK506-bi 97.3 0.00094 3.2E-08 73.6 11.8 119 568-690 270-406 (457)
202 3qww_A SET and MYND domain-con 97.2 0.00045 1.6E-08 74.8 7.8 104 650-771 311-432 (433)
203 2l6j_A TPR repeat-containing p 97.1 0.00087 3E-08 56.8 7.0 65 667-731 2-66 (111)
204 3ly7_A Transcriptional activat 97.1 0.0037 1.3E-07 64.8 12.7 137 562-726 190-333 (372)
205 1dce_A Protein (RAB geranylger 97.1 0.0035 1.2E-07 70.8 13.7 133 580-716 43-191 (567)
206 1klx_A Cysteine rich protein B 97.0 0.0025 8.5E-08 56.9 9.3 112 579-699 8-127 (138)
207 2kat_A Uncharacterized protein 96.9 0.0016 5.3E-08 55.9 6.8 66 637-702 19-86 (115)
208 3n71_A Histone lysine methyltr 96.9 0.0031 1.1E-07 69.4 10.4 122 576-697 319-463 (490)
209 1na3_A Designed protein CTPR2; 96.9 0.0022 7.4E-08 52.0 7.0 63 669-731 9-71 (91)
210 3qwp_A SET and MYND domain-con 96.8 0.0012 4E-08 71.7 6.3 108 645-770 295-420 (429)
211 2kc7_A BFR218_protein; tetratr 96.8 0.0041 1.4E-07 51.4 8.4 64 643-706 6-72 (99)
212 3qww_A SET and MYND domain-con 96.7 0.0046 1.6E-07 66.9 10.2 73 638-710 341-428 (433)
213 3ma5_A Tetratricopeptide repea 96.7 0.0027 9.2E-08 52.9 6.4 63 565-629 6-69 (100)
214 1klx_A Cysteine rich protein B 96.7 0.013 4.4E-07 52.2 11.3 112 615-734 9-128 (138)
215 3qwp_A SET and MYND domain-con 96.5 0.01 3.4E-07 64.3 11.2 72 640-711 332-418 (429)
216 3lvg_A Clathrin heavy chain 1; 96.3 2.7E-05 9.1E-10 81.6 -9.9 259 123-415 55-325 (624)
217 3mkq_A Coatomer beta'-subunit; 96.2 0.076 2.6E-06 63.2 17.7 151 373-560 609-761 (814)
218 2kc7_A BFR218_protein; tetratr 96.2 0.0072 2.4E-07 49.9 6.0 58 675-732 6-64 (99)
219 3lvg_A Clathrin heavy chain 1; 96.1 0.00064 2.2E-08 71.5 -1.0 213 17-246 49-285 (624)
220 3u64_A Protein TP_0956; tetrat 96.0 0.0096 3.3E-07 59.0 6.5 88 652-739 178-276 (301)
221 3ly7_A Transcriptional activat 96.0 0.028 9.7E-07 58.2 10.2 40 694-733 268-307 (372)
222 3bee_A Putative YFRE protein; 95.9 0.025 8.6E-07 46.1 7.7 76 634-710 3-83 (93)
223 2v5f_A Prolyl 4-hydroxylase su 95.8 0.04 1.4E-06 46.0 8.8 72 639-710 7-87 (104)
224 1pc2_A Mitochondria fission pr 95.3 0.052 1.8E-06 48.2 8.1 40 671-710 73-112 (152)
225 3mkq_A Coatomer beta'-subunit; 95.2 0.25 8.6E-06 58.6 16.4 154 201-389 608-762 (814)
226 3u64_A Protein TP_0956; tetrat 93.8 0.4 1.4E-05 47.6 11.1 112 547-663 133-266 (301)
227 3mkq_B Coatomer subunit alpha; 93.8 0.26 8.9E-06 45.0 9.0 74 645-729 13-86 (177)
228 1wy6_A Hypothetical protein ST 93.6 3.1 0.00011 35.6 14.7 139 578-735 19-157 (172)
229 4gns_B Protein CSD3, chitin bi 93.6 0.58 2E-05 53.6 13.5 53 677-729 345-397 (754)
230 3mkq_B Coatomer subunit alpha; 93.1 1.5 5.1E-05 39.9 12.8 104 199-319 12-115 (177)
231 1nzn_A CGI-135 protein, fissio 92.1 0.99 3.4E-05 38.5 9.7 39 672-710 77-115 (126)
232 1pc2_A Mitochondria fission pr 90.4 0.92 3.2E-05 40.2 8.1 83 516-601 14-104 (152)
233 3lpz_A GET4 (YOR164C homolog); 89.3 20 0.00069 36.3 19.5 166 432-629 38-215 (336)
234 4h7y_A Dual specificity protei 88.4 1.6 5.6E-05 38.2 7.8 108 561-703 8-128 (161)
235 2v5f_A Prolyl 4-hydroxylase su 87.1 1.7 5.8E-05 35.8 7.3 62 670-731 6-74 (104)
236 1v54_E Cytochrome C oxidase po 86.3 5.5 0.00019 32.0 9.0 68 656-735 32-99 (109)
237 4h7y_A Dual specificity protei 86.1 4.2 0.00014 35.6 9.1 100 220-321 10-122 (161)
238 1wy6_A Hypothetical protein ST 85.6 16 0.00056 31.2 13.1 67 292-359 90-156 (172)
239 3o48_A Mitochondria fission 1 85.2 5 0.00017 34.3 9.0 40 671-710 80-119 (134)
240 1y8m_A FIS1; mitochondria, unk 82.8 9.6 0.00033 33.1 9.9 37 673-709 81-117 (144)
241 2y69_E Cytochrome C oxidase su 82.2 11 0.00037 32.1 9.6 69 654-735 73-142 (152)
242 2wpv_A GET4, UPF0363 protein Y 81.1 48 0.0016 33.3 20.8 166 434-630 38-217 (312)
243 4b4t_P 26S proteasome regulato 81.1 52 0.0018 35.2 17.6 34 533-566 291-326 (445)
244 2wpv_A GET4, UPF0363 protein Y 79.9 53 0.0018 33.0 20.1 167 94-286 36-216 (312)
245 2p58_C Putative type III secre 79.6 11 0.00037 30.2 8.2 61 542-605 47-107 (116)
246 4b4t_P 26S proteasome regulato 79.1 72 0.0025 34.0 20.9 94 570-663 141-244 (445)
247 2uwj_G Type III export protein 79.0 10 0.00035 30.3 7.8 61 542-605 46-106 (115)
248 3ffl_A Anaphase-promoting comp 78.6 8 0.00027 34.6 8.3 29 638-666 123-151 (167)
249 3lpz_A GET4 (YOR164C homolog); 78.4 61 0.0021 32.8 22.7 166 94-286 38-215 (336)
250 1v54_E Cytochrome C oxidase po 77.8 6.2 0.00021 31.7 6.4 60 40-99 28-87 (109)
251 4gns_B Protein CSD3, chitin bi 77.5 20 0.00068 41.1 13.3 61 636-696 612-682 (754)
252 1nzn_A CGI-135 protein, fissio 76.0 33 0.0011 29.1 11.0 84 515-601 16-107 (126)
253 2ff4_A Probable regulatory pro 76.0 9.1 0.00031 40.3 9.6 69 570-640 175-248 (388)
254 3mv2_A Coatomer subunit alpha; 74.8 17 0.00057 36.4 10.2 42 660-701 196-239 (325)
255 1qsa_A Protein (soluble lytic 74.7 1.1E+02 0.0039 34.1 32.0 164 32-219 16-181 (618)
256 2ff4_A Probable regulatory pro 73.9 5.4 0.00018 42.1 7.1 59 672-730 174-232 (388)
257 3txn_A 26S proteasome regulato 73.5 46 0.0016 34.8 13.9 159 538-697 22-209 (394)
258 2l0z_A Glycoprotein G2; zinc-b 71.0 1.4 4.7E-05 28.2 0.9 10 858-867 20-29 (42)
259 1wdy_A 2-5A-dependent ribonucl 70.9 78 0.0027 30.6 15.1 58 199-257 152-213 (285)
260 3ffl_A Anaphase-promoting comp 68.7 28 0.00094 31.1 9.2 57 573-629 27-91 (167)
261 2qx5_A Nucleoporin NIC96; mRNA 68.5 1.4E+02 0.0047 33.6 17.1 80 369-455 300-382 (661)
262 2p58_C Putative type III secre 68.4 17 0.0006 29.0 6.8 77 72-152 22-99 (116)
263 2uwj_G Type III export protein 68.3 16 0.00056 29.1 6.6 77 72-152 21-98 (115)
264 3txn_A 26S proteasome regulato 65.9 1.3E+02 0.0045 31.3 18.0 220 470-734 104-345 (394)
265 4fhn_B Nucleoporin NUP120; pro 65.8 1.8E+02 0.006 35.5 19.1 142 506-655 818-989 (1139)
266 1qsa_A Protein (soluble lytic 65.7 1.7E+02 0.0059 32.6 24.7 124 580-710 228-356 (618)
267 2y69_E Cytochrome C oxidase su 65.3 16 0.00053 31.2 6.4 35 49-83 80-114 (152)
268 1zbp_A Hypothetical protein VP 62.1 56 0.0019 31.8 10.7 117 576-704 7-135 (273)
269 4fhn_B Nucleoporin NUP120; pro 60.5 97 0.0033 37.8 15.4 53 640-692 902-961 (1139)
270 1zbp_A Hypothetical protein VP 58.2 14 0.00047 36.1 5.7 59 646-704 6-66 (273)
271 2qx5_A Nucleoporin NIC96; mRNA 57.7 65 0.0022 36.2 11.9 85 470-565 299-386 (661)
272 4ady_A RPN2, 26S proteasome re 57.5 2.9E+02 0.0099 32.4 34.2 259 402-671 382-663 (963)
273 3ltm_A Alpha-REP4; protein eng 54.1 1.3E+02 0.0045 27.5 17.3 60 190-250 124-183 (211)
274 3mkr_B Coatomer subunit alpha; 53.9 28 0.00097 34.8 7.3 42 660-701 187-230 (320)
275 1qc6_A EVH1 domain from ENA/VA 53.6 3.5 0.00012 35.5 0.7 38 818-863 46-87 (130)
276 3kea_A K1L; tropism, ANK repea 52.2 1.4E+02 0.0047 29.3 12.6 20 264-283 164-183 (285)
277 1n11_A Ankyrin; clathrin, BAND 50.2 2.4E+02 0.0083 29.4 16.6 19 199-217 117-135 (437)
278 2lo3_A SAGA-associated factor 48.8 4 0.00014 26.3 0.2 11 824-834 16-26 (44)
279 1wdy_A 2-5A-dependent ribonucl 48.1 1.9E+02 0.0066 27.6 17.1 40 520-559 199-240 (285)
280 1n11_A Ankyrin; clathrin, BAND 47.6 2.6E+02 0.009 29.1 17.1 13 522-534 359-371 (437)
281 3esl_A Checkpoint serine/threo 46.4 95 0.0032 28.7 9.0 80 654-734 61-146 (202)
282 3eu9_A Huntingtin-interacting 45.2 1.1E+02 0.0038 28.5 10.4 19 370-388 214-232 (240)
283 4ady_A RPN2, 26S proteasome re 44.9 4.4E+02 0.015 30.9 31.6 256 397-663 342-620 (963)
284 3kea_A K1L; tropism, ANK repea 44.8 2.2E+02 0.0077 27.6 12.8 51 197-247 131-182 (285)
285 3eiq_C Programmed cell death p 43.5 1.7E+02 0.0059 29.9 11.5 28 94-121 57-84 (358)
286 3o48_A Mitochondria fission 1 43.5 1.2E+02 0.0042 25.8 8.5 84 585-671 22-113 (134)
287 4b4t_R RPN7, 26S proteasome re 41.5 1.7E+02 0.0058 30.9 11.8 56 537-592 133-194 (429)
288 3ltj_A Alpharep-4; protein eng 41.3 2E+02 0.0069 26.0 18.8 60 190-250 119-178 (201)
289 2hgo_A CASSIICOLIN; toxin, dis 41.3 5 0.00017 22.1 -0.2 13 856-868 8-22 (27)
290 3hra_A Ankyrin repeat family p 41.3 1.5E+02 0.005 26.8 10.2 179 98-282 9-199 (201)
291 3t8k_A Uncharacterized protein 40.7 1.9E+02 0.0066 26.0 10.7 90 203-293 14-109 (186)
292 3jxi_A Vanilloid receptor-rela 39.4 68 0.0023 30.8 7.8 25 233-257 12-36 (260)
293 3jxi_A Vanilloid receptor-rela 37.9 44 0.0015 32.2 6.1 26 132-157 12-37 (260)
294 1wj6_A KIAA0049 protein, RSGI 37.8 55 0.0019 26.1 5.1 28 743-770 19-46 (101)
295 1y8m_A FIS1; mitochondria, unk 37.6 2E+02 0.0069 24.8 9.2 73 597-670 35-111 (144)
296 2k0q_A Putative uncharacterize 36.2 12 0.0004 27.4 1.0 21 843-863 7-27 (74)
297 3esl_A Checkpoint serine/threo 35.7 1.9E+02 0.0066 26.6 9.3 58 516-573 95-153 (202)
298 2nsz_A Programmed cell death p 34.6 1E+02 0.0036 26.1 7.0 62 196-257 11-77 (129)
299 2ion_A PDCD4, programmed cell 34.6 74 0.0025 28.0 6.2 63 195-257 12-79 (152)
300 3eu9_A Huntingtin-interacting 34.4 2.8E+02 0.0095 25.5 11.6 20 98-117 46-65 (240)
301 3ljn_A Hypothetical protein; a 34.3 2.5E+02 0.0086 28.4 11.7 22 196-217 21-42 (364)
302 1j0t_A MIH, MOLT-inhibiting ho 32.8 4.6 0.00016 30.7 -1.6 14 823-836 20-33 (78)
303 4b4t_R RPN7, 26S proteasome re 32.8 1.8E+02 0.006 30.8 10.1 60 225-284 133-194 (429)
304 3bqo_A Telomeric repeat-bindin 31.1 2.6E+02 0.0089 25.6 9.0 61 653-713 94-161 (211)
305 2d2s_A Exocyst complex compone 29.4 1.4E+02 0.0049 28.4 7.8 86 28-115 24-115 (235)
306 2bkf_A Zinc-finger protein NBR 28.6 43 0.0015 26.0 3.0 28 743-770 11-38 (87)
307 4b4t_S RPN3, 26S proteasome re 28.4 2.6E+02 0.0088 30.2 10.2 116 535-662 231-366 (523)
308 4a1g_A Mitotic checkpoint seri 28.0 2.6E+02 0.0088 24.5 8.4 47 519-565 84-131 (152)
309 3bu8_A Telomeric repeat-bindin 27.0 2.1E+02 0.0071 26.6 7.7 38 675-712 120-157 (235)
310 3ltm_A Alpha-REP4; protein eng 26.5 3.6E+02 0.012 24.4 17.8 80 190-273 93-172 (211)
311 3d9h_A CDNA FLJ77766, highly s 26.2 2.8E+02 0.0095 26.9 9.8 221 88-327 9-249 (285)
312 2etb_A Transient receptor pote 25.7 2.1E+02 0.0071 27.1 8.7 18 370-387 140-157 (256)
313 3b7b_A Euchromatic histone-lys 25.4 4E+02 0.014 24.5 10.8 203 142-357 24-236 (237)
314 4a1g_A Mitotic checkpoint seri 25.3 3.2E+02 0.011 23.9 8.5 75 654-734 52-132 (152)
315 2nsz_A Programmed cell death p 25.2 2.5E+02 0.0085 23.7 7.8 25 226-250 10-34 (129)
316 2wvi_A Mitotic checkpoint seri 25.0 1.3E+02 0.0043 26.9 5.9 75 654-734 47-127 (164)
317 3ljn_A Hypothetical protein; a 23.7 4.3E+02 0.015 26.5 11.2 19 100-118 59-77 (364)
318 1oyz_A Hypothetical protein YI 23.4 4.9E+02 0.017 24.8 20.0 84 189-275 139-223 (280)
319 3aji_A 26S proteasome non-ATPa 23.2 4.3E+02 0.015 24.1 12.0 19 265-283 10-28 (231)
320 2pnn_A Transient receptor pote 22.3 2.4E+02 0.0083 27.0 8.4 18 370-387 152-169 (273)
321 2rfa_A Transient receptor pote 21.9 4.6E+02 0.016 23.9 11.4 180 94-283 3-219 (232)
322 2d2s_A Exocyst complex compone 21.3 4.4E+02 0.015 24.9 9.5 21 300-320 25-45 (235)
323 1ya0_A SMG-7 transcript varian 21.0 1.2E+02 0.0041 32.8 6.0 40 680-719 163-202 (497)
324 1ug3_A EIF4GI, eukaryotic prot 20.5 3.9E+02 0.013 26.9 9.6 59 196-254 15-77 (339)
325 3kae_A CDC27, possible protein 20.4 4.6E+02 0.016 23.4 14.0 82 546-629 44-142 (242)
326 3mv2_A Coatomer subunit alpha; 20.1 6.6E+02 0.022 25.1 11.7 128 31-187 123-257 (325)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.7e-41 Score=394.67 Aligned_cols=522 Identities=11% Similarity=0.021 Sum_probs=377.1
Q ss_pred HHHHhcCChhHHHHHHhhcCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHHH
Q 047992 99 SVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKL 178 (868)
Q Consensus 99 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 178 (868)
..+.+.|.+..++..|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|...|+++.|..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 3467788899999999999999999999999999999999999999999985 56888899999999999999999999
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccCh
Q 047992 179 MHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGV 258 (868)
Q Consensus 179 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 258 (868)
++..+... +++..+++.++.+|.++|++++|.++|+++...+... .++.+.+. ...+..++.
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~-----------~~~~~~~~~ 200 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDE-----KNANKLLM-----------QDGGIKLEA 200 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------C-----------CCSSCCHHH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccc-----cccccccc-----------cccccchhH
Confidence 99877543 5778899999999999999999999999644333110 01111111 122344455
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHH
Q 047992 259 VTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISAC 338 (868)
Q Consensus 259 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 338 (868)
.+|+.++.+|.+.|++++|.++|++|.+.++. +...|..+...+...+..+.
T Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~--------------------------- 252 (597)
T 2xpi_A 201 SMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEW--------------------------- 252 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHH---------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHH---------------------------
Confidence 66666666666666666666666666554322 22233333222221111110
Q ss_pred hchhhHHHHHHH-HHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCC--CCeehHHHHHHHHHhcCChhHHHH
Q 047992 339 TDLKALAMGMEI-HSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKD--KDVYSWNSMIAGYCQAGYCGKAYE 415 (868)
Q Consensus 339 ~~~~~~~~a~~i-~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~--~~~~~~~~li~~~~~~g~~~~A~~ 415 (868)
.....+ +..+...+......+++.++.+|.++|++++|.++|+.+.+ ++..+|+.++.+|.+.|++++|++
T Consensus 253 ------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 326 (597)
T 2xpi_A 253 ------DLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLA 326 (597)
T ss_dssp ------HHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------HHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHH
Confidence 000011 12222222233344566678888889999999999998887 688889999999999999999999
Q ss_pred HHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCC
Q 047992 416 LFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSC 495 (868)
Q Consensus 416 l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 495 (868)
+|+++.+.+ +.+..+++.++.+|.+.|++++|..+|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++...
T Consensus 327 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 402 (597)
T 2xpi_A 327 ITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH--PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM- 402 (597)
T ss_dssp HHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-
Confidence 999988765 3477788888899999999999999998887543 556778888888888888888888888877531
Q ss_pred CCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHH
Q 047992 496 FYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSL 572 (868)
Q Consensus 496 ~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~l 572 (868)
.+.+..+++.++.+|.+.|++++|.++|+++. +.+..+|+.+
T Consensus 403 -----------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 447 (597)
T 2xpi_A 403 -----------------------------------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFL 447 (597)
T ss_dssp -----------------------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHH
T ss_pred -----------------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 12355677888888888899999988888764 4577889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCChHHHHHHHHHhhhhc---CCCCC--hhHHHHHHHh
Q 047992 573 ICGYVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSIILAHSLAGMVDLGKKVFCSITECY---QIIPM--IEHYSAMIDL 646 (868)
Q Consensus 573 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~y~~lvd~ 646 (868)
+.+|.+.|++++|+++|++|.+. .| +..++..+..++.+.|++++|.++|+.+.+.. +..|+ ..+|..++++
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~ 525 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHA 525 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHH
Confidence 99999999999999999999874 34 56888888899999999999999999887743 66777 6789999999
Q ss_pred hhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhh
Q 047992 647 YGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAI 715 (868)
Q Consensus 647 l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 715 (868)
|.+.|++++|.+.++++ ...| +..+|..+..+|...|+++.|...++++++++|+++.+|..|+++|..
T Consensus 526 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 526 YRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 99999999999999887 3344 677999999999999999999999999999999999999999998864
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-39 Score=380.71 Aligned_cols=499 Identities=12% Similarity=0.025 Sum_probs=398.7
Q ss_pred HHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHH
Q 047992 201 VYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEM 280 (868)
Q Consensus 201 ~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 280 (868)
.+.++|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..++..|.+.|++++|..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 356678888899999999989999999999999999999999999999985 467889999999999999999999999
Q ss_pred HHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCC
Q 047992 281 VKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFT 360 (868)
Q Consensus 281 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 360 (868)
|+.+... .++..+|+.++.+|.+.|++++|+++|+++ .|+.. ...++...++ ...+..
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~----~~~~~~~~~~-----------~~~~~~ 197 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGET-----NPFRK----DEKNANKLLM-----------QDGGIK 197 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSS-----CTTC--------------C-----------CCSSCC
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhcc-----CCccc----cccccccccc-----------cccccc
Confidence 9998643 568899999999999999999999999853 23221 0111111111 112345
Q ss_pred CCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCC---eehHHHHHHHHHhcCChhHHH--HH-HHHhHhCCCCCCeeehhh
Q 047992 361 DDVLVGNSLINMYSKCEELEAAERVFDMIKDKD---VYSWNSMIAGYCQAGYCGKAY--EL-FIKMQESDVPPNVITWNV 434 (868)
Q Consensus 361 ~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~---~~~~~~li~~~~~~g~~~~A~--~l-~~~m~~~g~~p~~~t~~~ 434 (868)
.+..+++.++.+|.+.|++++|.++|+++.+.+ ...|..+...+...+..+.+. .+ +..+...+..+...+|+.
T Consensus 198 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 277 (597)
T 2xpi_A 198 LEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYML 277 (597)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHH
Confidence 567788889999999999999999998886533 334444544443333322221 11 555565555566677888
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchh
Q 047992 435 LISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLV 514 (868)
Q Consensus 435 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 514 (868)
++.+|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++++|+++|+++...+ +.+..++..+...+...|
T Consensus 278 ~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 353 (597)
T 2xpi_A 278 KLNKTSHEDELRRAEDYLSSINGL---EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESG 353 (597)
T ss_dssp TSCTTTTHHHHHHHHHHHHTSTTG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHT
T ss_pred HHHHHcCcchHHHHHHHHHHhhcC---CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhC
Confidence 899999999999999999999764 5888999999999999999999999999998654 336778889999999999
Q ss_pred chHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHH
Q 047992 515 ASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQ 591 (868)
Q Consensus 515 ~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 591 (868)
+.+.+.+++..+++. .+.+..+++.++.+|.++|++++|.++|+++. +.+..+|+.++.+|.+.|++++|+++|++
T Consensus 354 ~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 354 EKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp CHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999864 34578899999999999999999999999864 56788999999999999999999999999
Q ss_pred HHHCCCCC-CHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-------
Q 047992 592 MKSFGLKP-NRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM------- 663 (868)
Q Consensus 592 m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~------- 663 (868)
|.+. .| +..++..++.+|.+.|++++|.++|+.+.+.. ..+...|.+++++|.+.|++++|.++++++
T Consensus 433 ~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 508 (597)
T 2xpi_A 433 AARL--FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508 (597)
T ss_dssp HHHT--TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHh--CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence 9984 45 66899999999999999999999999998753 335788999999999999999999999988
Q ss_pred CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 664 PIEPD--SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 664 ~~~p~--~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
+..|+ ..+|..++.+|..+|+++.|+..++++++++|+++.+|..|+++|...|+|++|.+..+.+.+.
T Consensus 509 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 509 QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 55787 7799999999999999999999999999999999999999999999999999999998887654
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=8.3e-25 Score=240.15 Aligned_cols=335 Identities=14% Similarity=0.171 Sum_probs=255.0
Q ss_pred hchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCC--C-CeehHHHHHHHHHhcCChhHHHH
Q 047992 339 TDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKD--K-DVYSWNSMIAGYCQAGYCGKAYE 415 (868)
Q Consensus 339 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~ 415 (868)
...++++.+...+..+++.. +.+...+..+...|.+.|++++|...|+.+.. | +..+|..+...+.+.|++++|++
T Consensus 44 ~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 122 (388)
T 1w3b_A 44 FQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 33444444444444443332 33445666666677777777777777766542 2 34467777777777788888888
Q ss_pred HHHHhHhCCCCCC-eeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcC
Q 047992 416 LFIKMQESDVPPN-VITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSS 494 (868)
Q Consensus 416 l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 494 (868)
.|+++.+.. |+ ...+..+...|...|++++|.+.|+++.+.. |.+..+|..+...+.+.|++++|...|+++...
T Consensus 123 ~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 198 (388)
T 1w3b_A 123 AYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL 198 (388)
T ss_dssp HHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 887777653 33 3345566677777788888888887776543 445567777777777777777777777776532
Q ss_pred CCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHH
Q 047992 495 CFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNS 571 (868)
Q Consensus 495 g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~ 571 (868)
.| .+...+..+...|.+.|++++|...|++.. +.+..+|+.
T Consensus 199 --~p----------------------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 242 (388)
T 1w3b_A 199 --DP----------------------------------NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242 (388)
T ss_dssp --CT----------------------------------TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred --CC----------------------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHH
Confidence 12 245567778888889999999999988653 456788999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhc
Q 047992 572 LICGYVLHGFWHAALDLFDQMKSFGLKPN-RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRS 650 (868)
Q Consensus 572 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~ 650 (868)
+...|...|++++|++.|+++.+ ..|+ ..++..+..++...|++++|..+|+.+.+. .+++...+..+..++.+.
T Consensus 243 l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 243 LACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHc
Confidence 99999999999999999999998 5665 477888889999999999999999999874 345677899999999999
Q ss_pred CChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 047992 651 GKLEEAMEFIEDM-PIEPD-SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGK 718 (868)
Q Consensus 651 g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 718 (868)
|++++|.+.++++ ...|+ ..+|..+..++...|+++.|...++++++++|+++.+|..++++|...|+
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999998 44454 66899999999999999999999999999999999999999999988764
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=3.9e-26 Score=255.15 Aligned_cols=188 Identities=10% Similarity=0.083 Sum_probs=127.1
Q ss_pred eHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCC---------hHHHHHHHHHHHHhCCCCCcch
Q 047992 124 TWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGD---------FEAGKLMHSLVIKLGMSCVRRV 194 (868)
Q Consensus 124 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~~ 194 (868)
.++.+|.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. ++.|.++++.|.+.|+.|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P---- 103 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP---- 103 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC----
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC----
Confidence 4666677777777777777777777777777777777777777765543 233444444444444333
Q ss_pred HHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCCh
Q 047992 195 RNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQC 274 (868)
Q Consensus 195 ~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 274 (868)
|.++||+||.+|++.|++++|.++|++|.+.|+.||..|||+||.+|++.|++
T Consensus 104 ---------------------------d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~ 156 (501)
T 4g26_A 104 ---------------------------NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDA 156 (501)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH
T ss_pred ---------------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCH
Confidence 44445555555555666666667777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchh
Q 047992 275 DVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLK 342 (868)
Q Consensus 275 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 342 (868)
++|.++|++|.+.|+.||..||++||.+|++.|+.++|.++|++|.+.|+.|+..||..++..+...+
T Consensus 157 ~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 157 DKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 77777777777777777777777777777777777777777777777777777777777776665543
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=1.8e-26 Score=257.89 Aligned_cols=215 Identities=15% Similarity=0.135 Sum_probs=184.8
Q ss_pred HHHHHHHHhHHCCCCCCc-chHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhc
Q 047992 140 EVVELFFLMVQDGLFPDD-FLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESM 218 (868)
Q Consensus 140 ~a~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 218 (868)
.+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++++.|.+.|+.||.++||+||.+|++.+....+
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 455667778777776554 358889999999999999999999999999999999999999999887764321
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHH
Q 047992 219 DEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTC 298 (868)
Q Consensus 219 ~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 298 (868)
.+.+..++|.++|++|...|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..+||+
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 23445789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcC
Q 047992 299 MISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKC 376 (868)
Q Consensus 299 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 376 (868)
+|.+|++.|+.++|.++|++|.+.|+.||..||+++|.+|++.|+.++|.+++..|.+.|..|+..+++.++..|...
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988753
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=1.8e-23 Score=229.39 Aligned_cols=323 Identities=15% Similarity=0.150 Sum_probs=239.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHh
Q 047992 365 VGNSLINMYSKCEELEAAERVFDMIKD---KDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQ 441 (868)
Q Consensus 365 ~~~~li~~y~~~g~~~~A~~vf~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 441 (868)
.+..+...+.+.|++++|...++.... .+..+|..+...|.+.|++++|++.|+++.+.. +.+..+|..+...|.+
T Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 113 (388)
T 1w3b_A 35 VLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVA 113 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 444455556666666666666655432 234455556666666666666666666555432 1122345555555555
Q ss_pred cCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHH
Q 047992 442 NGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKE 521 (868)
Q Consensus 442 ~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 521 (868)
.|++++|.+.|+++.+.. |.+...+..+...+...|++++|.+.|+++
T Consensus 114 ~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------------------------------ 161 (388)
T 1w3b_A 114 AGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKA------------------------------ 161 (388)
T ss_dssp HSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH------------------------------
T ss_pred cCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHH------------------------------
Confidence 555555555555554432 223333444444445555555555555444
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 047992 522 IHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLK 598 (868)
Q Consensus 522 i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 598 (868)
++. .+.+...++.+...|.+.|++++|...|+++. +.+...|..+...+...|++++|+..|++... +.
T Consensus 162 -----l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~ 233 (388)
T 1w3b_A 162 -----IET-QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LS 233 (388)
T ss_dssp -----HHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HC
T ss_pred -----HHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hC
Confidence 442 12356778889999999999999999999875 45667899999999999999999999999998 56
Q ss_pred CC-HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhC-C-CCCCHHHHHH
Q 047992 599 PN-RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDM-P-IEPDSSIWEA 674 (868)
Q Consensus 599 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~-~~p~~~~w~~ 674 (868)
|+ ..++..+..++...|++++|...|+.+.+. .| +...|..++.++.+.|++++|.+.++++ . .+++..+|..
T Consensus 234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 310 (388)
T 1w3b_A 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN 310 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHH
Confidence 75 478888999999999999999999999873 34 4567999999999999999999999988 2 3456779999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 675 LLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 675 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
+...+...|+++.|...+++++++.|+++..+..|+.+|...|++++|.+..+.+.+
T Consensus 311 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999887754
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=5.7e-24 Score=238.46 Aligned_cols=348 Identities=14% Similarity=0.071 Sum_probs=248.8
Q ss_pred CccHHHHHHHHHHcCCCHHHHHHHHHhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHH
Q 047992 362 DVLVGNSLINMYSKCEELEAAERVFDMIKD---KDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISG 438 (868)
Q Consensus 362 ~~~~~~~li~~y~~~g~~~~A~~vf~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 438 (868)
+...+..+...|.+.|++++|..+|+.+.. .+..+|..+...|...|++++|+..|+++.+.+ +.+..++..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 344566666777777777777777766542 345566666777777777777777777766554 2244556666666
Q ss_pred HHhcCCHHHHHHHHHhcccCCCCCCCe---eehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhc
Q 047992 439 YIQNGNEDEAVDLFQRMGKNDKVKRNT---ASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVA 515 (868)
Q Consensus 439 ~~~~g~~~~A~~~f~~m~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 515 (868)
|.+.|++++|...|+++.+.. +.+. ..|..++..+...+ +......+...|+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSGD 158 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcCC
Confidence 777777777777777665543 2233 44444433311100 0011112334455
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHH
Q 047992 516 SNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQM 592 (868)
Q Consensus 516 ~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 592 (868)
++.+...+..+++. .+.+..++..++.+|.++|++++|.+.|+++. +.+..+|+.++..|...|++++|++.|+++
T Consensus 159 ~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 159 YTAAIAFLDKILEV-CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555442 23367788899999999999999999999875 467889999999999999999999999999
Q ss_pred HHCCCCCCHHHHH-HH------------HHHhhccCChHHHHHHHHHhhhhcCCCCC--hhHHHHHHHhhhhcCChHHHH
Q 047992 593 KSFGLKPNRGTFL-SI------------ILAHSLAGMVDLGKKVFCSITECYQIIPM--IEHYSAMIDLYGRSGKLEEAM 657 (868)
Q Consensus 593 ~~~g~~p~~~t~~-~l------------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lvd~l~r~g~~~eA~ 657 (868)
.+ ..|+..+.. .+ ..+|.+.|++++|..+|+.+.+..+..|. ..+|.++++++.+.|++++|.
T Consensus 238 ~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 238 LK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp HH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 97 677765433 33 67899999999999999999874333332 568999999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHH------------HHHhhcC--CChh
Q 047992 658 EFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLIL------------QIYAICG--KPED 721 (868)
Q Consensus 658 ~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~------------~~y~~~g--~~~~ 721 (868)
+.++++ ...| +..+|..+..+|...|+++.|...++++++++|+++.++..|+ +.|...| ++.+
T Consensus 316 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~ 395 (450)
T 2y4t_A 316 RVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCC
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCC
Confidence 999997 4445 5779999999999999999999999999999999999999999 5677777 4444
Q ss_pred HHHHHHHHHhcCCCCCC
Q 047992 722 ALKVRKLERENTRRNSF 738 (868)
Q Consensus 722 a~~~~~~m~~~~~~k~~ 738 (868)
..++++.+++..++..|
T Consensus 396 ~~~~~~~y~~~~l~~~p 412 (450)
T 2y4t_A 396 KQEIIKAYRKLALQWHP 412 (450)
T ss_dssp TTHHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 45556555554444444
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.2e-21 Score=223.42 Aligned_cols=444 Identities=14% Similarity=0.030 Sum_probs=295.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHH
Q 047992 224 VAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGF 303 (868)
Q Consensus 224 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 303 (868)
..|......+.+.|++++|++.|+++.... |+..++..+...|.+.|++++|...|+++.+.++. +..+|..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHHH
Confidence 346667778888899999999999888765 68888888999999999999999999988887644 667888899999
Q ss_pred HhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHH---HHHHHHcCCCHH
Q 047992 304 AQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNS---LINMYSKCEELE 380 (868)
Q Consensus 304 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~---li~~y~~~g~~~ 380 (868)
.+.|++++|+..|+++...+ +++.......+..+..........+.+..+...+..++...... ............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 99999999999999987655 34445555555554444444433333322222211111110000 001111111122
Q ss_pred HHHHHHHhcCC---------C-CeehHHHHHHHHHh---cCChhHHHHHHHHhHh-----CCCCC--------Ceeehhh
Q 047992 381 AAERVFDMIKD---------K-DVYSWNSMIAGYCQ---AGYCGKAYELFIKMQE-----SDVPP--------NVITWNV 434 (868)
Q Consensus 381 ~A~~vf~~~~~---------~-~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~-----~g~~p--------~~~t~~~ 434 (868)
.+...+..... + +...+......+.. .|++++|+..|+++.+ ....| +..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 22222222211 1 12233333333333 6777777777777766 31122 2344556
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchh
Q 047992 435 LISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLV 514 (868)
Q Consensus 435 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 514 (868)
+...|...|++++|...|+++.+.. |+...|..+...|...|++++|+..++++...
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------------------- 299 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELF---PRVNSYIYMALIMADRNDSTEYYNYFDKALKL-------------------- 299 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--------------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--------------------
Confidence 6666777777777777777665543 22555666666666666666666666665532
Q ss_pred chHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHH
Q 047992 515 ASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQ 591 (868)
Q Consensus 515 ~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 591 (868)
.+.+..++..+...|.+.|++++|...|++.. +.+...|..+...|...|++++|++.|++
T Consensus 300 ----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 363 (514)
T 2gw1_A 300 ----------------DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSE 363 (514)
T ss_dssp ----------------CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred ----------------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 12245567778888888888888888888653 45667888888888899999999999999
Q ss_pred HHHCCCCCC-HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC----hhHHHHHHHhhhh---cCChHHHHHHHHhC
Q 047992 592 MKSFGLKPN-RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM----IEHYSAMIDLYGR---SGKLEEAMEFIEDM 663 (868)
Q Consensus 592 m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lvd~l~r---~g~~~eA~~~i~~~ 663 (868)
+.+ ..|+ ..++..+...+...|++++|..+|+.+.+...-.|. ...+..+..++.+ .|++++|.+.++++
T Consensus 364 ~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a 441 (514)
T 2gw1_A 364 AKR--KFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA 441 (514)
T ss_dssp HHH--HSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH
T ss_pred HHH--HcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence 887 3453 467777888888899999999999888775444444 4478888899999 99999999999887
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 047992 664 -PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQI 712 (868)
Q Consensus 664 -~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 712 (868)
...| +..+|..+...+...|+++.|...++++++++|+++..+..+...
T Consensus 442 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 442 SKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 3334 456888888899999999999999999999999988887776443
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=7.4e-21 Score=216.94 Aligned_cols=433 Identities=10% Similarity=-0.031 Sum_probs=281.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHH
Q 047992 259 VTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISAC 338 (868)
Q Consensus 259 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 338 (868)
..+..+...+.+.|++++|...|+++.+.. |+..+|..+..++.+.|++++|+..++++.... +.+..++..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 445566667777777777777777777664 466777777777777777777777777776432 12223444455555
Q ss_pred hchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHH
Q 047992 339 TDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFI 418 (868)
Q Consensus 339 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 418 (868)
...|+++.|...+..+.+.+. ++......++..+.+... ...+.+.+.
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~l~ 131 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQA-------------------------------MSKLKEKFG 131 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHH-------------------------------HHHHTTC--
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHH-------------------------------HHHHHHHHH
Confidence 555555555555555554432 222222222222222221 222222222
Q ss_pred HhHhCCCCCCeeehhhHHHH---HHhcCCHHHHHHHHHhcccCCC-----CCCCeeehhhhHHHHHh---cCChhHHHHH
Q 047992 419 KMQESDVPPNVITWNVLISG---YIQNGNEDEAVDLFQRMGKNDK-----VKRNTASWNSLIAGYQQ---LGQKNNALGV 487 (868)
Q Consensus 419 ~m~~~g~~p~~~t~~~li~~---~~~~g~~~~A~~~f~~m~~~~~-----~~~~~~~~~~li~~~~~---~g~~~~A~~~ 487 (868)
.+...+..|+...+..-... .............+........ .+.+...+......+.. .|++++|+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 211 (514)
T 2gw1_A 132 DIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADES 211 (514)
T ss_dssp -------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHH
T ss_pred HHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHH
Confidence 22111111111111110000 0001111111111111111000 01123333333343443 6778888888
Q ss_pred HHHhhc-----CCCCC--------CHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 047992 488 FRKMQS-----SCFYP--------NCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYS 554 (868)
Q Consensus 488 ~~~m~~-----~g~~p--------~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A 554 (868)
|+++.. ..-.| +..++..+...+...|+++.+...+..+++.... ..++..+...|.+.|++++|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A 289 (514)
T 2gw1_A 212 FTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEY 289 (514)
T ss_dssp HHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTG
T ss_pred HHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHH
Confidence 877765 21122 2345555666677778888888888888775433 77888999999999999999
Q ss_pred HHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCChHHHHHHHHHhhhh
Q 047992 555 RTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN-RGTFLSIILAHSLAGMVDLGKKVFCSITEC 630 (868)
Q Consensus 555 ~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 630 (868)
...|+++. +.+...|..+...|...|++++|+..|+++.+ ..|+ ...+..+...+...|++++|..+|+.+.+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 367 (514)
T 2gw1_A 290 YNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE--LDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK 367 (514)
T ss_dssp GGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHH--TCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999764 45677899999999999999999999999998 4554 477888888999999999999999999875
Q ss_pred cCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHhccC
Q 047992 631 YQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM----PIEPD----SSIWEALLTACRI---HGNIDLAVLAIERLFDLE 699 (868)
Q Consensus 631 ~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~----~~~p~----~~~w~~ll~a~~~---~~~~~~a~~~~~~~~~l~ 699 (868)
.. .+...+..+..++.+.|++++|.+.++++ |..|+ ..+|..+...+.. .|+++.|...++++++++
T Consensus 368 ~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 368 FP--EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445 (514)
T ss_dssp ST--TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred cc--cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence 33 24567889999999999999999999887 33333 4488999999999 999999999999999999
Q ss_pred CCCchhHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 700 PGDVLIQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 700 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
|+++.++..++.+|...|++++|.+..+...+.
T Consensus 446 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 446 PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 999999999999999999999999988776543
No 10
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.87 E-value=1.4e-16 Score=187.10 Aligned_cols=313 Identities=13% Similarity=0.178 Sum_probs=230.4
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHH
Q 047992 369 LINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEA 448 (868)
Q Consensus 369 li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 448 (868)
+...+...|.+++|..+|+.... .....+.+ +-..+++++|.++.++.. +..+|..+..++...|++++|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~-~~~A~~VL---ie~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV-NTSAVQVL---IEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC-HHHHHHHH---HHHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHH
Confidence 44555666777777777777541 11111222 226677777777777653 567788888888888888888
Q ss_pred HHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHH
Q 047992 449 VDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLR 528 (868)
Q Consensus 449 ~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~ 528 (868)
.+.|.+. .|...|..++..+.+.|++++|.+.|...+... ++....+.+.-++++.+.++..... ++
T Consensus 1125 IdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~ 1191 (1630)
T 1xi4_A 1125 IDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN 1191 (1630)
T ss_pred HHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh
Confidence 8888664 466677778888888888888888888766543 3333333477777777776643333 21
Q ss_pred hCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047992 529 RSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSII 608 (868)
Q Consensus 529 ~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 608 (868)
.++...+..+.+.|...|++++|...|... ..|..+...|.+.|++++|++.+++. -|..+|..+-
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~ 1257 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 1257 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHH
Confidence 345556667888888888888888888885 37888888888888888888888876 3457888888
Q ss_pred HHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhc--CC
Q 047992 609 LAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSS-IWEALLTACRIH--GN 684 (868)
Q Consensus 609 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~--~~ 684 (868)
.+|...|.+..|..+... +.-+.+.+..++..|.+.|.++||+.+++.. ..+|... .|.-|.-++.++ ++
T Consensus 1258 ~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pek 1331 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQK 1331 (1630)
T ss_pred HHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHH
Confidence 888888888888876653 3345677889999999999999999999887 6666555 675565555544 57
Q ss_pred HHHHHHHHHHHhccCC-----CCchhHHHHHHHHhhcCCChhHHH
Q 047992 685 IDLAVLAIERLFDLEP-----GDVLIQRLILQIYAICGKPEDALK 724 (868)
Q Consensus 685 ~~~a~~~~~~~~~l~p-----~~~~~~~~l~~~y~~~g~~~~a~~ 724 (868)
+..+.+.++.-..+.| +++..|.-+.-+|...|+|+.|..
T Consensus 1332 lmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1332 MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 8888888888888888 888999999999999999999985
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=4.6e-20 Score=211.73 Aligned_cols=431 Identities=11% Similarity=0.037 Sum_probs=199.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHH
Q 047992 224 VAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGF 303 (868)
Q Consensus 224 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 303 (868)
..|..+...+.+.|++++|++.|+++.... +.+..++..+...|.+.|++++|++.|+++.+.++. +..+|..+...+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHH
Confidence 345555566666666666666666665543 224445555555555555555555555555544322 344444444555
Q ss_pred HhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHH
Q 047992 304 AQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAE 383 (868)
Q Consensus 304 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 383 (868)
...|++++|+..|+.+. ..|+ ..+..+..+...+....|.
T Consensus 104 ~~~g~~~~A~~~~~~~~---~~~~-------------------------------------~~~~~~~~~~~~~~~~~a~ 143 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLS---LNGD-------------------------------------FDGASIEPMLERNLNKQAM 143 (537)
T ss_dssp HHHTCHHHHHHHHHHHC---------------------------------------------------CHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHh---cCCC-------------------------------------CChHHHHHHHHHHHHHHHH
Confidence 55555555555443221 1111 1111233444445556677
Q ss_pred HHHHhcCCC------CeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCee-ehhhHHHHHHhc--------CCHHHH
Q 047992 384 RVFDMIKDK------DVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVI-TWNVLISGYIQN--------GNEDEA 448 (868)
Q Consensus 384 ~vf~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~li~~~~~~--------g~~~~A 448 (868)
..++.+... ........+..+....+.+.+...+...... .+... ....+...+... |++++|
T Consensus 144 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A 221 (537)
T 3fp2_A 144 KVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKS 221 (537)
T ss_dssp HHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 777666542 1222344444555555555554444333211 01100 112222222221 256666
Q ss_pred HHHHHhcccCCCCCCCe-------eehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHH
Q 047992 449 VDLFQRMGKNDKVKRNT-------ASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKE 521 (868)
Q Consensus 449 ~~~f~~m~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 521 (868)
..+|+++.+.. +.+. .+|..+...+...|++++|...|+++.. ..|+...+..+...+...|+++.+..
T Consensus 222 ~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~ 297 (537)
T 3fp2_A 222 TDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN--LHPTPNSYIFLALTLADKENSQEFFK 297 (537)
T ss_dssp HHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHHHHTCCSSCCHHHHH
T ss_pred HHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHhcCHHHHHH
Confidence 66666665543 1221 1344444555566666666666666554 23444444455555555555555555
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 047992 522 IHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLK 598 (868)
Q Consensus 522 i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 598 (868)
.+..+++.. +.+..++..+...|.+.|++++|...|++.. +.+...|..+...|...|++++|++.|+++.+ ..
T Consensus 298 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~ 374 (537)
T 3fp2_A 298 FFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL--KF 374 (537)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC
T ss_pred HHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC
Confidence 555555432 1234455555555555555555555555432 23344555555555555555555555555555 23
Q ss_pred CCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC----hhHHHHHHHhhhhc----------CChHHHHHHHHhC
Q 047992 599 PNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM----IEHYSAMIDLYGRS----------GKLEEAMEFIEDM 663 (868)
Q Consensus 599 p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lvd~l~r~----------g~~~eA~~~i~~~ 663 (868)
|+. ..+..+...+...|+.++|..+|+.+.+...-.+. ...+.....++.+. |++++|.+.++++
T Consensus 375 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 454 (537)
T 3fp2_A 375 PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA 454 (537)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHH
Confidence 332 34444455555555555555555554432211111 11122223344444 5555555555544
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh
Q 047992 664 -PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLI 705 (868)
Q Consensus 664 -~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 705 (868)
...| +..+|..+...+...|+++.|...++++++++|+++..
T Consensus 455 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 455 CELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 1122 23345555555555555555555555555555554443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=3.6e-20 Score=212.63 Aligned_cols=421 Identities=12% Similarity=0.045 Sum_probs=273.0
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHH
Q 047992 192 RRVRNSVLAVYVKCGKLIWARRFFESMDE---KDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSY 268 (868)
Q Consensus 192 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 268 (868)
...+..+...|.+.|++++|...|+++.. .+...|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+...|
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 34567788899999999999999998753 478899999999999999999999999998865 34678899999999
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCC------ccCCcccHHHHHHHHhchh
Q 047992 269 NQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVG------VMPNGVTITSAISACTDLK 342 (868)
Q Consensus 269 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------~~pd~~t~~~ll~a~~~~~ 342 (868)
...|++++|...|+.+ .. +....+..+..+...+...+|+..++++.... ..|+...
T Consensus 104 ~~~g~~~~A~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~------------ 166 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SL----NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTS------------ 166 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHH------------
T ss_pred HHcCCHHHHHHHHHHH-hc----CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhH------------
Confidence 9999999999999743 33 22222333556666667788888888885321 1122221
Q ss_pred hHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCee---hHHHHHHHHH--------hcCChh
Q 047992 343 ALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVY---SWNSMIAGYC--------QAGYCG 411 (868)
Q Consensus 343 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~---~~~~li~~~~--------~~g~~~ 411 (868)
+..|....+.+.+...+......+.. .+..+...+. ..|+++
T Consensus 167 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 219 (537)
T 3fp2_A 167 ---------------------------LASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLT 219 (537)
T ss_dssp ---------------------------HHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 12222223333333322222222111 1111111111 113455
Q ss_pred HHHHHHHHhHhCCCCCC--------eeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhH
Q 047992 412 KAYELFIKMQESDVPPN--------VITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNN 483 (868)
Q Consensus 412 ~A~~l~~~m~~~g~~p~--------~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 483 (868)
+|+.+|+++.+.. |+ ..++..+...+...|++++|...|++..+.. |+...|..+...+...|++++
T Consensus 220 ~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 294 (537)
T 3fp2_A 220 KSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH---PTPNSYIFLALTLADKENSQE 294 (537)
T ss_dssp HHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHTCCSSCCHH
T ss_pred HHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHhcCHHH
Confidence 5555555555432 22 1123444445555666666666666655432 334555555666666666666
Q ss_pred HHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC-
Q 047992 484 ALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS- 562 (868)
Q Consensus 484 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~- 562 (868)
|+..|+++.... +.+..++..+...+...|+.+.+.+.+..+++.. +.+...+..+...|.+.|++++|...|+++.
T Consensus 295 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 372 (537)
T 3fp2_A 295 FFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKL 372 (537)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666655421 1234455555555666666666666666666632 2356788999999999999999999999764
Q ss_pred --CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHhhcc----------CChHHHHHH
Q 047992 563 --SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-------GTFLSIILAHSLA----------GMVDLGKKV 623 (868)
Q Consensus 563 --~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~a~~~~----------g~~~~a~~~ 623 (868)
+.+...|..+...|...|++++|++.|+++.+.. |+. ..+.....++... |++++|..+
T Consensus 373 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~ 450 (537)
T 3fp2_A 373 KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE--EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKL 450 (537)
T ss_dssp HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHH
Confidence 4567789999999999999999999999998732 321 2234445567777 999999999
Q ss_pred HHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC
Q 047992 624 FCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD 668 (868)
Q Consensus 624 ~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~ 668 (868)
|+...+... .+...+..+..+|.+.|++++|.+.++++ ...|+
T Consensus 451 ~~~a~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 451 LTKACELDP--RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhCC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 999987432 34577899999999999999999999987 33443
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.85 E-value=1.2e-19 Score=203.05 Aligned_cols=363 Identities=12% Similarity=0.069 Sum_probs=207.1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHH
Q 047992 257 GVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAIS 336 (868)
Q Consensus 257 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 336 (868)
+...+..+...|.+.|++++|..+|+++.+..+. +..+|..+..++.+.|++++|+..|+++...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------- 89 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQL-------------- 89 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------------
Confidence 4555666666666666666666666666654332 4556666666666666666666666665432
Q ss_pred HHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCe------ehHHHHHHHHHhcCCh
Q 047992 337 ACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDV------YSWNSMIAGYCQAGYC 410 (868)
Q Consensus 337 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~------~~~~~li~~~~~~g~~ 410 (868)
+ +.+..++..+...|.+.|++++|...|+.+...++ ..|..++..+...
T Consensus 90 ---------------------~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 144 (450)
T 2y4t_A 90 ---------------------K-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ--- 144 (450)
T ss_dssp ---------------------C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH---
T ss_pred ---------------------C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH---
Confidence 1 12344555666667777777777777766654322 3344443331111
Q ss_pred hHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHH
Q 047992 411 GKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRK 490 (868)
Q Consensus 411 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 490 (868)
.+..+...|.+.|++++|...|+++.+.. +.+...+..+...|.+.|++++|+..|++
T Consensus 145 --------------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 202 (450)
T 2y4t_A 145 --------------------RLRSQALNAFGSGDYTAAIAFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKA 202 (450)
T ss_dssp --------------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCGGGGHHHHHH
T ss_pred --------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 01112233444555555555555554432 33444555555555555555555555555
Q ss_pred hhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCce
Q 047992 491 MQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDII 567 (868)
Q Consensus 491 m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~ 567 (868)
+... . +.+..++..++..|.+.|++++|...|+++. +.+..
T Consensus 203 ~~~~--~----------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 246 (450)
T 2y4t_A 203 ASKL--K----------------------------------NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR 246 (450)
T ss_dssp HHHH--H----------------------------------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHh--C----------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHH
Confidence 5421 0 1123344444555555555555555555432 22223
Q ss_pred ecHHH------------HHHHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhhccCChHHHHHHHHHhhhh
Q 047992 568 TWNSL------------ICGYVLHGFWHAALDLFDQMKSFGLKPNR-----GTFLSIILAHSLAGMVDLGKKVFCSITEC 630 (868)
Q Consensus 568 ~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 630 (868)
.|..+ +..|...|++++|++.|+++.+ +.|+. ..+..+..++.+.|++++|..+++.+.+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 33333 6677777888888888888777 45652 35566667777788888888888877653
Q ss_pred cCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC-----CHHHHHHH
Q 047992 631 YQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTA------------CRIHG-----NIDLAVLA 691 (868)
Q Consensus 631 ~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a------------~~~~~-----~~~~a~~~ 691 (868)
. +.+...|..+..+|...|++++|.+.++++ ...|+ ..+|..+..+ +...| +.+.+.+.
T Consensus 325 ~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~ 402 (450)
T 2y4t_A 325 E--PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKA 402 (450)
T ss_dssp C--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHH
T ss_pred C--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHH
Confidence 1 224567777788888888888888888776 55554 3455555533 22233 56777888
Q ss_pred HHH-HhccCCCCch----------hHHHHHHHHhhcCCChh
Q 047992 692 IER-LFDLEPGDVL----------IQRLILQIYAICGKPED 721 (868)
Q Consensus 692 ~~~-~~~l~p~~~~----------~~~~l~~~y~~~g~~~~ 721 (868)
+++ +++..|++.. .+..++..|...|+.+.
T Consensus 403 y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 403 YRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 886 7888887543 33445555555555443
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=4.7e-15 Score=174.46 Aligned_cols=507 Identities=13% Similarity=0.134 Sum_probs=274.2
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhC--CCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcC
Q 047992 160 FPKILQACGNCGDFEAGKLMHSLVIKLG--MSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIG 237 (868)
Q Consensus 160 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g 237 (868)
.+...+++...|.+.++.++++.++..+ +..+....+.|+.+..+. +......+.+....-+ ..-+...+...|
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNE 1063 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCC
Confidence 3445666666666777777666666322 113445555566555555 3344444444333222 334556666677
Q ss_pred ChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHH
Q 047992 238 ENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFK 317 (868)
Q Consensus 238 ~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 317 (868)
.+++|..+|++... .....+.++ -..+++++|.++.++.. +..+|..+..++.+.|++++|++.|.
T Consensus 1064 lyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred CHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 77777777766421 111112222 25566677766666552 45667777777777777777777775
Q ss_pred HHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehH
Q 047992 318 EMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSW 397 (868)
Q Consensus 318 ~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~ 397 (868)
+. -|...|..+..+|.+.|+++++.+.+....+.. +++.+.+.++..|++.+++++..... ..++...|
T Consensus 1130 KA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~ 1198 (1630)
T 1xi4_A 1130 KA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHI 1198 (1630)
T ss_pred hc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHH
Confidence 43 445566667777777777777777776665543 33333445667777777766533332 33455556
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHh
Q 047992 398 NSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQ 477 (868)
Q Consensus 398 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~ 477 (868)
..+...|...|++++|..+|... ..|..+...|.+.|++++|.+.+++. .+..+|..+-.+|..
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhh
Confidence 66666677777777777777663 25667777777777777777777665 344666666666777
Q ss_pred cCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc--CCHHHHH
Q 047992 478 LGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKS--GNIVYSR 555 (868)
Q Consensus 478 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~--g~~~~A~ 555 (868)
.|++..|...... +..+...+..+...+.+.|.++++..+++..+... +.....++-|...|+|- +++.++.
T Consensus 1263 ~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred hhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 7776666664432 22333444466666666777777776666555422 22445565566666553 4566666
Q ss_pred HHHhcCCC--------CCceecHHHHHHHHhcCChHHHHHH-------------HHHHHHCCCCCCHHHHHHHHHHhhcc
Q 047992 556 TIFDGMSS--------KDIITWNSLICGYVLHGFWHAALDL-------------FDQMKSFGLKPNRGTFLSIILAHSLA 614 (868)
Q Consensus 556 ~~f~~~~~--------~d~~~~~~li~~~~~~g~~~~A~~l-------------~~~m~~~g~~p~~~t~~~ll~a~~~~ 614 (868)
+.|..-.. .+...|.-+...|.+.|+++.|+.. |++... -..|...|.-.+.-|.
T Consensus 1337 k~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl-- 1412 (1630)
T 1xi4_A 1337 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYL-- 1412 (1630)
T ss_pred HHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHHH--
Confidence 66653221 2445677777777777777777732 222111 1122333333333333
Q ss_pred CChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047992 615 GMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIER 694 (868)
Q Consensus 615 g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~ 694 (868)
+.-.+++..+.. .+.|.++| .-.|.++.+.|.+.-+..+++....+-+..+-.+|-..+....|++.-+...+.
T Consensus 1413 ~~~P~~lndLl~-----~l~~rlD~-~R~V~l~~~~~~l~lik~yl~~vq~~n~~~Vneal~el~ieeed~~~Lr~si~~ 1486 (1630)
T 1xi4_A 1413 EFKPLLLNDLLM-----VLSPRLDH-TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDA 1486 (1630)
T ss_pred hhChHHHHHHHH-----HhhhcCCh-HHHHHHHHHcCChHHhHHHHHHHHHhcchhhhHHHHHHhcCccchHHHHHHHhh
Confidence 222222222222 23344443 445667777777776666666543233333333343333333333222111111
Q ss_pred HhccCC--------CCchh--HHHHHHHHhhcCCChhHHHHHH
Q 047992 695 LFDLEP--------GDVLI--QRLILQIYAICGKPEDALKVRK 727 (868)
Q Consensus 695 ~~~l~p--------~~~~~--~~~l~~~y~~~g~~~~a~~~~~ 727 (868)
--..|. .+.-. -..-+.+|-+.|+|+.|.++.+
T Consensus 1487 ~~nfd~~~La~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k 1529 (1630)
T 1xi4_A 1487 YDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCK 1529 (1630)
T ss_pred ccCcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 100000 01111 2234566777788888887654
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.80 E-value=1e-17 Score=180.82 Aligned_cols=311 Identities=14% Similarity=0.076 Sum_probs=197.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHH
Q 047992 397 WNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQ 476 (868)
Q Consensus 397 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~ 476 (868)
|..+...+...|++++|+..|+++.+.. +.+..++..+...|...|++++|...|+++.+.. +.+...|..+...+.
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHHHHHH
Confidence 4444445555555555555555554432 2234445555555555555555555555554432 234445555555555
Q ss_pred hcCChhHHHHHHHHhhcCCCCC---CHH-hHHHH------------HHHHhchhchHHHHHHHHHHHHhCCCCChhHHHH
Q 047992 477 QLGQKNNALGVFRKMQSSCFYP---NCV-TILSV------------LPACAYLVASNKVKEIHGCVLRRSLESSLPVMNS 540 (868)
Q Consensus 477 ~~g~~~~A~~~~~~m~~~g~~p---~~~-t~~~l------------l~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 540 (868)
..|++++|...|+++... .| +.. .+..+ ...+...|+.+.+.+.+..+++. .+.+..++..
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~ 159 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV-CVWDAELREL 159 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCchHHHHH
Confidence 666666666666555532 33 211 11111 24455566666666666666653 2235667778
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HH-----------
Q 047992 541 LIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGT-FL----------- 605 (868)
Q Consensus 541 Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~----------- 605 (868)
+...|.+.|++++|...|++.. +.+...|..+...|...|++++|++.|++..+ ..|+... +.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCccchHHHHHHHHHHHHHHH
Confidence 8888888888888888888654 34667788888888888888888888888887 4555432 21
Q ss_pred -HHHHHhhccCChHHHHHHHHHhhhhcCCCCCh--hHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 047992 606 -SIILAHSLAGMVDLGKKVFCSITECYQIIPMI--EHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACR 680 (868)
Q Consensus 606 -~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~ 680 (868)
.+...+...|+.++|..+|+.+.+.....|.. ..|..+..++...|++++|.+.+++. ...| +..+|..+...+.
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 22455777888888888888877644332221 23556777888888888888888876 3334 5667888888888
Q ss_pred hcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhh
Q 047992 681 IHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAI 715 (868)
Q Consensus 681 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 715 (868)
..|+++.|...++++++++|+++..+..|..++..
T Consensus 318 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 88888888888888888888888887777766543
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.77 E-value=5.6e-17 Score=172.87 Aligned_cols=285 Identities=15% Similarity=0.110 Sum_probs=197.7
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHH
Q 047992 394 VYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIA 473 (868)
Q Consensus 394 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~ 473 (868)
...+..+...+...|++++|+++|+++.+.. +.+...+..++..+...|++++|..+|+++.+.. +.+...|..+..
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~ 98 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAVGC 98 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHH
Confidence 3344444455555555555555555554432 2233344445555666666666666666665433 344555666666
Q ss_pred HHHhcC-ChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 047992 474 GYQQLG-QKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIV 552 (868)
Q Consensus 474 ~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~ 552 (868)
.+...| ++++|...|++.... .| .+...+..+..+|.+.|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~--~~----------------------------------~~~~~~~~l~~~~~~~~~~~ 142 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTL--EK----------------------------------TYGPAWIAYGHSFAVESEHD 142 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTT--CT----------------------------------TCTHHHHHHHHHHHHHTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHh--CC----------------------------------ccHHHHHHHHHHHHHccCHH
Confidence 666666 666666666665432 11 13445666777777777877
Q ss_pred HHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCChHHHHHHHHHhh
Q 047992 553 YSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN-RGTFLSIILAHSLAGMVDLGKKVFCSIT 628 (868)
Q Consensus 553 ~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 628 (868)
+|...|++.. +.+...|..+...|...|++++|++.|++..+ ..|+ ...+..+...+...|++++|..+|+...
T Consensus 143 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 143 QAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp HHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 7777777654 34556777788888888888888888888887 4454 4677777778888888888888888776
Q ss_pred hhcC-------CCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 047992 629 ECYQ-------IIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLE 699 (868)
Q Consensus 629 ~~~~-------~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~ 699 (868)
+... .......+..+..++.+.|++++|.+.++++ ...| +..+|..+...+...|+++.|...++++++++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 6431 1334568889999999999999999999987 3333 56689999999999999999999999999999
Q ss_pred CCCchhHHHHHHHH-hhcCCC
Q 047992 700 PGDVLIQRLILQIY-AICGKP 719 (868)
Q Consensus 700 p~~~~~~~~l~~~y-~~~g~~ 719 (868)
|+++..+..|+..| ...|+-
T Consensus 301 p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 301 RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp SCCHHHHHHHHHHHHTTTTC-
T ss_pred CCchHHHHHHHHHHHHHhCch
Confidence 99999999999988 455554
No 17
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.74 E-value=1.8e-16 Score=170.96 Aligned_cols=295 Identities=15% Similarity=0.075 Sum_probs=244.4
Q ss_pred eehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCC-CHHhHHHHHH
Q 047992 430 ITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYP-NCVTILSVLP 508 (868)
Q Consensus 430 ~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 508 (868)
..+..+...+...|++++|...|+++.+.. +.+...|..+...+...|++++|+..|+++... .| +...+..+..
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcchHHHHHHH
Confidence 456677888999999999999999997764 566789999999999999999999999998864 34 5567778888
Q ss_pred HHhchhchHHHHHHHHHHHHhCCCC----ChhHHHHH------------HHHHHhcCCHHHHHHHHhcCC---CCCceec
Q 047992 509 ACAYLVASNKVKEIHGCVLRRSLES----SLPVMNSL------------IDTYAKSGNIVYSRTIFDGMS---SKDIITW 569 (868)
Q Consensus 509 a~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~L------------i~~y~k~g~~~~A~~~f~~~~---~~d~~~~ 569 (868)
.+...|+.+.+...+..+++. .| +...+..+ ...|...|++++|.+.|+++. +.+...|
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 157 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELR 157 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence 889999999999999999884 44 34444444 688999999999999999764 5577889
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChh-HH-------
Q 047992 570 NSLICGYVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIE-HY------- 640 (868)
Q Consensus 570 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~y------- 640 (868)
..+...|...|++++|++.|+++.+ ..| +..++..+...+...|+.++|..+|+...+...-.+... .|
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASK--LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT--TCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHH
Confidence 9999999999999999999999998 455 457888888899999999999999999887433322221 11
Q ss_pred --HHHHHhhhhcCChHHHHHHHHhC-CCCCC-HH----HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 047992 641 --SAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SS----IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQI 712 (868)
Q Consensus 641 --~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~----~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 712 (868)
..+...+.+.|++++|.+.++++ ...|+ .. .|..+...+...|+++.|...++++++++|+++..+..++.+
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEA 315 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 13367789999999999999987 33343 32 355577788999999999999999999999999999999999
Q ss_pred HhhcCCChhHHHHHHHHHhc
Q 047992 713 YAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 713 y~~~g~~~~a~~~~~~m~~~ 732 (868)
|...|++++|.+..+...+.
T Consensus 316 ~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 316 YLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhc
Confidence 99999999999998877543
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=5.4e-17 Score=176.10 Aligned_cols=255 Identities=13% Similarity=0.074 Sum_probs=182.4
Q ss_pred eehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHH
Q 047992 430 ITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPA 509 (868)
Q Consensus 430 ~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 509 (868)
..+..+...|.+.|++++|...|+++.+.. +.+..+|..+...|...|++++|+..|+++.
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al----------------- 125 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCL----------------- 125 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH-----------------
Confidence 334444445555555555555555544432 3333444444445555555555555554443
Q ss_pred HhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecH----------------
Q 047992 510 CAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWN---------------- 570 (868)
Q Consensus 510 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~---------------- 570 (868)
+. .+.+..++..++..|.+.|++++|.+.|+++. +.+...+.
T Consensus 126 ------------------~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (368)
T 1fch_A 126 ------------------EL-KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKR 186 (368)
T ss_dssp ------------------HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------C
T ss_pred ------------------hc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHH
Confidence 21 12244556666667777777777777776543 22222232
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhh
Q 047992 571 SLICGYVLHGFWHAALDLFDQMKSFGLKPN---RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLY 647 (868)
Q Consensus 571 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l 647 (868)
.+.. +...|++++|++.|+++.+ ..|+ ..++..+...+...|++++|..+|+.+.+.. +.+...|..+..++
T Consensus 187 ~~~~-~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~ 261 (368)
T 1fch_A 187 ILGS-LLSDSLFLEVKELFLAAVR--LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATL 261 (368)
T ss_dssp TTHH-HHHHHHHHHHHHHHHHHHH--HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHH-HhhcccHHHHHHHHHHHHH--hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHH
Confidence 2333 3488999999999999998 4565 6788888899999999999999999988742 23467889999999
Q ss_pred hhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-----------chhHHHHHHHHh
Q 047992 648 GRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGD-----------VLIQRLILQIYA 714 (868)
Q Consensus 648 ~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~-----------~~~~~~l~~~y~ 714 (868)
.+.|++++|.+.++++ ...| +..+|..+..++...|+++.|...+++++++.|++ +..|..|+.+|.
T Consensus 262 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (368)
T 1fch_A 262 ANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS 341 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHH
Confidence 9999999999999987 3344 56689999999999999999999999999999988 789999999999
Q ss_pred hcCCChhHHHHHH
Q 047992 715 ICGKPEDALKVRK 727 (868)
Q Consensus 715 ~~g~~~~a~~~~~ 727 (868)
..|++++|..+.+
T Consensus 342 ~~g~~~~A~~~~~ 354 (368)
T 1fch_A 342 MLGQSDAYGAADA 354 (368)
T ss_dssp HHTCGGGHHHHHT
T ss_pred HhCChHhHHHhHH
Confidence 9999999999865
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.73 E-value=2e-16 Score=168.46 Aligned_cols=262 Identities=14% Similarity=0.046 Sum_probs=209.2
Q ss_pred CCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHH
Q 047992 426 PPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILS 505 (868)
Q Consensus 426 ~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 505 (868)
+.+...+..+...+...|++++|.++|+++.+.. +.+...+..++..+...|++++|..+++++...
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------- 85 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDL----------- 85 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh-----------
Confidence 3455556666667777777777777777776543 334445555666666666666666666665431
Q ss_pred HHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC-CHHHHHHHHhcCC---CCCceecHHHHHHHHhcCC
Q 047992 506 VLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSG-NIVYSRTIFDGMS---SKDIITWNSLICGYVLHGF 581 (868)
Q Consensus 506 ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g-~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~ 581 (868)
.+.+..++..+...|...| ++++|.+.|++.. +.+...|..+...|...|+
T Consensus 86 -------------------------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 140 (330)
T 3hym_B 86 -------------------------YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE 140 (330)
T ss_dssp -------------------------CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTC
T ss_pred -------------------------CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccC
Confidence 2235667788889999999 9999999999764 4567789999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHH
Q 047992 582 WHAALDLFDQMKSFGLKPN-RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFI 660 (868)
Q Consensus 582 ~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i 660 (868)
+++|++.|+++.+ ..|+ ...+..+...+...|++++|..+|+...+.. +.+...+..+..++.+.|++++|.+.+
T Consensus 141 ~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~ 216 (330)
T 3hym_B 141 HDQAMAAYFTAAQ--LMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA--PEDPFVMHEVGVVAFQNGEWKTAEKWF 216 (330)
T ss_dssp HHHHHHHHHHHHH--HTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcccHHHHHHHH
Confidence 9999999999998 4554 4677778889999999999999999988742 334577889999999999999999999
Q ss_pred HhC----CC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 661 EDM----PI-------EPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 661 ~~~----~~-------~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
+++ +- +.+..+|..+...+...|+++.|...++++++++|+++..+..++.+|...|++++|.+..+..
T Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 217 LDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp HHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 876 11 3345689999999999999999999999999999999999999999999999999999988743
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=4.5e-16 Score=165.25 Aligned_cols=281 Identities=16% Similarity=0.185 Sum_probs=119.7
Q ss_pred HhcCChhHHHHHHhhcCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHH
Q 047992 102 AKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHS 181 (868)
Q Consensus 102 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 181 (868)
-+.|++++|.+.+++++.|+ +|..|..++.+.|++++|++.|.+ .+|..+|..++.+|...|++++|...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 47889999999999997765 999999999999999999999975 3688899999999999999999999888
Q ss_pred HHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhH
Q 047992 182 LVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTF 261 (868)
Q Consensus 182 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 261 (868)
...+. .+++.+.+.|+.+|.++|+++++.++++. ++..+|+.+...|...|.+++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 88875 45678899999999999999999988864 67779999999999999999999999977 379
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhch
Q 047992 262 NILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDL 341 (868)
Q Consensus 262 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 341 (868)
..|...+.+.|++++|.+.+.++. ++.+|..++.+|+..|+++.|......+. +.|+ -...++..|.+.
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA~------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad--~l~~lv~~Yek~ 220 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDR 220 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHH--HHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHcC------CchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHh--hHHHHHHHHHHC
Confidence 999999999999999999999882 78999999999999999999966544321 2233 244566667777
Q ss_pred hhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcC--CCHHHHHHHHHhcCC--------CCeehHHHHHHHHHhcCChh
Q 047992 342 KALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKC--EELEAAERVFDMIKD--------KDVYSWNSMIAGYCQAGYCG 411 (868)
Q Consensus 342 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~--g~~~~A~~vf~~~~~--------~~~~~~~~li~~~~~~g~~~ 411 (868)
|.++++..+++..+... +-....++-|.-.|++- +++.+..+.|..-.. .+...|..++..|.+.++++
T Consensus 221 G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d 299 (449)
T 1b89_A 221 GYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 299 (449)
T ss_dssp TCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 77777777777666443 34455566666666553 455555555543222 14455666666666666666
Q ss_pred HHHHH
Q 047992 412 KAYEL 416 (868)
Q Consensus 412 ~A~~l 416 (868)
.|...
T Consensus 300 ~A~~t 304 (449)
T 1b89_A 300 NAIIT 304 (449)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=3e-15 Score=171.10 Aligned_cols=426 Identities=11% Similarity=0.076 Sum_probs=254.6
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHH
Q 047992 221 KDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMI 300 (868)
Q Consensus 221 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 300 (868)
.|...|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|+.++|..+|++..... |+...|...+
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 36778888888 477899999999999988642 3456678888888888999999999999988764 4666777766
Q ss_pred HHH-HhcCChhHHHH----HHHHHHh-CCccCCc-ccHHHHHHHHhc---------hhhHHHHHHHHHHHHHhCCCCCcc
Q 047992 301 SGF-AQNGRTSQALD----LFKEMSF-VGVMPNG-VTITSAISACTD---------LKALAMGMEIHSLAVKMGFTDDVL 364 (868)
Q Consensus 301 ~~~-~~~g~~~~A~~----l~~~m~~-~g~~pd~-~t~~~ll~a~~~---------~~~~~~a~~i~~~~~~~g~~~~~~ 364 (868)
... ...|+.++|.+ +|++... .|..|+. ..|...+..... .|+++.++.++..+++........
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 533 35677776665 5555443 2444432 233333333222 455555666655555421000011
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhH------hCC---CCCCee-ehhh
Q 047992 365 VGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQ------ESD---VPPNVI-TWNV 434 (868)
Q Consensus 365 ~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~------~~g---~~p~~~-t~~~ 434 (868)
++..........|. ..+..++. ...+++.+|..++.++. +.. ++|+.. .+..
T Consensus 167 ~~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~ 228 (530)
T 2ooe_A 167 LWRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQ 228 (530)
T ss_dssp HHHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHH
T ss_pred HHHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHH
Confidence 11111111000000 00111110 01233444444444321 111 122210 0000
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhc----CCh----hHHHHHHHHhhcCCCCCCHHhHHHH
Q 047992 435 LISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQL----GQK----NNALGVFRKMQSSCFYPNCVTILSV 506 (868)
Q Consensus 435 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~l 506 (868)
. ...|...+.....+ ++. ++|..+|++.... .+-+...|...
T Consensus 229 ~-----------------------------~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~ 278 (530)
T 2ooe_A 229 Q-----------------------------VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEA 278 (530)
T ss_dssp H-----------------------------HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred H-----------------------------HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHH
Confidence 0 11222222211111 111 2444455544432 11123333333
Q ss_pred HHHHhc-------hhchH-------HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCc-ee
Q 047992 507 LPACAY-------LVASN-------KVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDI-IT 568 (868)
Q Consensus 507 l~a~~~-------~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~-~~ 568 (868)
...+.. .|+++ .+..++...++.-.+.+..++..++..+.+.|++++|..+|+++. +.+. ..
T Consensus 279 ~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 358 (530)
T 2ooe_A 279 AQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLV 358 (530)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHH
T ss_pred HHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHH
Confidence 333332 35544 556666665542233467788899999999999999999999764 2343 47
Q ss_pred cHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHH-hhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHh
Q 047992 569 WNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILA-HSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDL 646 (868)
Q Consensus 569 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~ 646 (868)
|..++..+.+.|+.++|.++|++..+. .|+. ..+...... +...|+.++|+.+|+...+..+- +...+..++++
T Consensus 359 ~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~--~~~~~~~~~~~ 434 (530)
T 2ooe_A 359 YIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD--IPEYVLAYIDY 434 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC--CHHHHHHHHHH
Confidence 998888888999999999999999884 4442 333333222 23589999999999988875432 45678899999
Q ss_pred hhhcCChHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 047992 647 YGRSGKLEEAMEFIEDM----PIEPD--SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGD 702 (868)
Q Consensus 647 l~r~g~~~eA~~~i~~~----~~~p~--~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 702 (868)
+.+.|+.++|..++++. |..|+ ..+|...+.....+|+.+.+..+.+++++..|++
T Consensus 435 ~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 435 LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp HTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred HHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 99999999999999887 44443 4589999999999999999999999999999853
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.71 E-value=2.2e-16 Score=167.72 Aligned_cols=379 Identities=13% Similarity=0.150 Sum_probs=184.6
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHH
Q 047992 270 QLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGME 349 (868)
Q Consensus 270 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 349 (868)
+.|++++|.+.++++. +..+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|+++++..
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5667777777777773 3358888888888888888888888653 577788888888888888888888
Q ss_pred HHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCe
Q 047992 350 IHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNV 429 (868)
Q Consensus 350 i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 429 (868)
.+....+. .+++.+.+.|+.+|.++|+++++.++++ .|+..+|+.+...|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------
Confidence 77766663 4456778888889999999988887775 366778999999999999999999999876
Q ss_pred eehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHH
Q 047992 430 ITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPA 509 (868)
Q Consensus 430 ~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 509 (868)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. +.|+. ...++..
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad~--l~~lv~~ 216 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINY 216 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHHH--HHHHHHH
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHhh--HHHHHHH
Confidence 37888899999999999999999888 367888999999999999999866554432 44444 4467778
Q ss_pred HhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh--cCCHHHHHHHHhcCC---C-----CCceecHHHHHHHHhc
Q 047992 510 CAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAK--SGNIVYSRTIFDGMS---S-----KDIITWNSLICGYVLH 579 (868)
Q Consensus 510 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k--~g~~~~A~~~f~~~~---~-----~d~~~~~~li~~~~~~ 579 (868)
+.+.|..+.+..+++..+... +....+++-|.-.|+| -|++.++.+.|..-. + .+...|.-+.-.|...
T Consensus 217 Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~ 295 (449)
T 1b89_A 217 YQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKY 295 (449)
T ss_dssp HHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888888888888777533 3467778888888876 467888888887432 2 3678999999999999
Q ss_pred CChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhhccCChHHHHHHHHH--------hhhhcCCCCChhHHHHHHHhhhhc
Q 047992 580 GFWHAALDLFDQMKSF-GLKPNRGTFLSIILAHSLAGMVDLGKKVFCS--------ITECYQIIPMIEHYSAMIDLYGRS 650 (868)
Q Consensus 580 g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~--------m~~~~~~~p~~~~y~~lvd~l~r~ 650 (868)
|+++.|+.. |.+. ...-++..|.-++.--...-.+-+|..++-. +.. .+.|.++| +-.|..+.+.
T Consensus 296 ~e~d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~~l~~ll~--~l~~~ld~-~r~v~~~~~~ 369 (449)
T 1b89_A 296 EEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLM--VLSPRLDH-TRAVNYFSKV 369 (449)
T ss_dssp TCHHHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHH--HHGGGCCH-HHHHHHHHHT
T ss_pred chHHHHHHH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHHHHHHHHH--HHHhccCc-HHHHHHHHHc
Confidence 999999874 4442 1222345555444333333333344443321 111 22344443 4566777777
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047992 651 GKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIE 693 (868)
Q Consensus 651 g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~ 693 (868)
|.+.=...+++.+.-..+..+-.+|-..+....|++.-+...+
T Consensus 370 ~~l~l~~~yl~~v~~~n~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 370 KQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp TCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 7777777777666444556666667677777777766555444
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=2.4e-14 Score=163.56 Aligned_cols=209 Identities=12% Similarity=0.034 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHh-------cCCHH-------HHHHHHhcCC----CCCceecHHHHHHHHhc
Q 047992 518 KVKEIHGCVLRRSLESSLPVMNSLIDTYAK-------SGNIV-------YSRTIFDGMS----SKDIITWNSLICGYVLH 579 (868)
Q Consensus 518 ~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k-------~g~~~-------~A~~~f~~~~----~~d~~~~~~li~~~~~~ 579 (868)
.+..++..+++. .+.++.+|..++..+.+ .|+++ +|+.+|++.. +.+...|..++..+...
T Consensus 256 ~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 556677777774 34478889999988886 79987 8999999764 34577899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHh-hhhcCChHH
Q 047992 580 GFWHAALDLFDQMKSFGLKPNR--GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM-IEHYSAMIDL-YGRSGKLEE 655 (868)
Q Consensus 580 g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~-l~r~g~~~e 655 (868)
|+.++|.++|+++++ +.|+. ..|........+.|.+++|+.+|+...+. .|. ...|.....+ +...|+.++
T Consensus 335 g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp TCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhH
Confidence 999999999999999 67764 46888888888899999999999998874 333 3334333322 336899999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCch----hHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 656 AMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVL----IQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 656 A~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~----~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
|.+++++. ...| ++.+|..++......|+.+.|+.+++++++..|.++. .|..........|+.+++.++.+.+
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999977 3334 5679999999999999999999999999999887665 6777788888899999999998877
Q ss_pred Hhc
Q 047992 730 REN 732 (868)
Q Consensus 730 ~~~ 732 (868)
.+.
T Consensus 490 ~~~ 492 (530)
T 2ooe_A 490 FTA 492 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 24
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=3.1e-17 Score=187.05 Aligned_cols=160 Identities=14% Similarity=0.200 Sum_probs=123.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHH---HcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHH
Q 047992 223 GVAWNSMISGYFQIGENDEAHRLFDKMC---REEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCM 299 (868)
Q Consensus 223 ~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 299 (868)
..+||+||.+|++.|++++|.++|.+|. ..|+.||+.|||+||++|++.|++++|.++|++|.+.|+.||++|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4578899999999999999999987765 4578899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCh-hHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCC------ccHHHHHHHH
Q 047992 300 ISGFAQNGRT-SQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDD------VLVGNSLINM 372 (868)
Q Consensus 300 i~~~~~~g~~-~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~------~~~~~~li~~ 372 (868)
|.++++.|+. ++|.++|++|...|+.||..||++++.++.+.+-++....+ ..++.|+ +.+...|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv-----~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV-----KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG-----CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh-----CcccCCCCCCcccccchHHHHHH
Confidence 9999998875 78889999999999999999998888655443333222221 2345544 5566678888
Q ss_pred HHcCC---------CHHHHHHHHH
Q 047992 373 YSKCE---------ELEAAERVFD 387 (868)
Q Consensus 373 y~~~g---------~~~~A~~vf~ 387 (868)
|.+.+ ..++-...|+
T Consensus 282 ~s~d~~~s~pk~~~~~~~L~~~~~ 305 (1134)
T 3spa_A 282 YAKDGRVSYPKLHLPLKTLQCLFE 305 (1134)
T ss_dssp HCCCSCCCCCCCSSCHHHHHHHHH
T ss_pred HccCCCCcCccccCCHHHHHHHHH
Confidence 88766 2455555554
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.68 E-value=4e-16 Score=169.18 Aligned_cols=231 Identities=12% Similarity=0.035 Sum_probs=187.0
Q ss_pred CeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 047992 464 NTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLID 543 (868)
Q Consensus 464 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~ 543 (868)
+...|..+...+.+.|++++|+..|+++... .+.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------------------------------------~p~~~~~~~~lg~ 107 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ------------------------------------DPGDAEAWQFLGI 107 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH------------------------------------CTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh------------------------------------CcCCHHHHHHHHH
Confidence 4455777777777778888887777777532 1235567788889
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HH----------HHHHH
Q 047992 544 TYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRG-TF----------LSIIL 609 (868)
Q Consensus 544 ~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~----------~~ll~ 609 (868)
+|.+.|++++|...|+++. +.+..+|..+...|...|++++|++.|+++.+ ..|+.. .+ ..+..
T Consensus 108 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~ 185 (365)
T 4eqf_A 108 TQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSK 185 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHCC----------------
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHH
Confidence 9999999999999998764 45678899999999999999999999999988 556542 22 23466
Q ss_pred HhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 047992 610 AHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDL 687 (868)
Q Consensus 610 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~ 687 (868)
.+...|++++|..+|+.+.+..+..++...+..+..+|.+.|++++|.+.++++ ...| +..+|..+..++...|+++.
T Consensus 186 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 265 (365)
T 4eqf_A 186 SPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEE 265 (365)
T ss_dssp ---CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 888999999999999999886554446788999999999999999999999987 3334 57799999999999999999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 688 AVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 688 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
|...++++++++|+++.++..|+.+|...|++++|.+..+...+.
T Consensus 266 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 266 AVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987776543
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.68 E-value=2e-15 Score=157.19 Aligned_cols=181 Identities=9% Similarity=0.019 Sum_probs=106.4
Q ss_pred hchhchHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHH
Q 047992 511 AYLVASNKVKEIHGCVLRRSLES-SLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLF 589 (868)
Q Consensus 511 ~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~ 589 (868)
...++.+.+.+.+..++..+..| +..++..+...|.+.|++++|.+.|++ +.+...+..++..|.+.|+.++|++.|
T Consensus 76 ~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 76 ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp HCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 33333333333333333333222 455566777888899999999999988 567778888888999999999999999
Q ss_pred HHHHHCCCCCCHHHHH---HHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCC
Q 047992 590 DQMKSFGLKPNRGTFL---SIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIE 666 (868)
Q Consensus 590 ~~m~~~g~~p~~~t~~---~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~ 666 (868)
+++.+ ..|+..... +.+..+...|++++|..+|+.+.+. .+
T Consensus 154 ~~~~~--~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~----------------------------------~p 197 (291)
T 3mkr_A 154 KKMQD--QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK----------------------------------CS 197 (291)
T ss_dssp HHHHH--HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH----------------------------------SC
T ss_pred HHHHh--hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh----------------------------------CC
Confidence 99988 456643111 1112222335555555555555443 12
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhH-HHHHHHH
Q 047992 667 PDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDA-LKVRKLE 729 (868)
Q Consensus 667 p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a-~~~~~~m 729 (868)
++..+|..+..++...|+++.|+..++++++++|+++.++..++.++...|+++++ .++++.+
T Consensus 198 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 198 PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33445555555555555555555555555555555555555555555555555542 3444333
No 27
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.68 E-value=3.4e-14 Score=160.55 Aligned_cols=366 Identities=12% Similarity=-0.014 Sum_probs=230.0
Q ss_pred ChhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHh----cCChhHHHHHHHHHHhCCccCCc
Q 047992 257 GVVTFNILIRSYNQ----LGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQ----NGRTSQALDLFKEMSFVGVMPNG 328 (868)
Q Consensus 257 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~ 328 (868)
+...+..|...|.. .++.++|...|++..+.| +...+..|...|.. .+++++|++.|++..+.|
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----- 109 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----- 109 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----
Confidence 44555555555555 556666666666555442 34455555555555 555555555555554332
Q ss_pred ccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHc----CCCHHHHHHHHHhcCCC-CeehHHHHHHH
Q 047992 329 VTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSK----CEELEAAERVFDMIKDK-DVYSWNSMIAG 403 (868)
Q Consensus 329 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~vf~~~~~~-~~~~~~~li~~ 403 (868)
+......|..+|.. .+++++|...|+...+. +..++..+...
T Consensus 110 ---------------------------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~ 156 (490)
T 2xm6_A 110 ---------------------------------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDA 156 (490)
T ss_dssp ---------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---------------------------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 22233334444444 45555555555544332 33444555555
Q ss_pred HHh----cCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHh----cCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHH
Q 047992 404 YCQ----AGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQ----NGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGY 475 (868)
Q Consensus 404 ~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~ 475 (868)
|.. .++.++|++.|++..+.| +...+..|...|.. .+++++|..+|++..+.+ +...+..+...|
T Consensus 157 y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y 229 (490)
T 2xm6_A 157 YFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG----DELGQLHLADMY 229 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHH
Confidence 554 455666666666665554 44555555566655 566666666666655432 334444555555
Q ss_pred Hh----cCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----
Q 047992 476 QQ----LGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAK---- 547 (868)
Q Consensus 476 ~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k---- 547 (868)
.. .+++++|...|++..+.| +......|..+|.+
T Consensus 230 ~~g~g~~~~~~~A~~~~~~a~~~~--------------------------------------~~~a~~~lg~~y~~g~~~ 271 (490)
T 2xm6_A 230 YFGIGVTQDYTQSRVLFSQSAEQG--------------------------------------NSIAQFRLGYILEQGLAG 271 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHTTT--------------------------------------CHHHHHHHHHHHHHTTTS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCC--------------------------------------CHHHHHHHHHHHHCCCCC
Confidence 44 455556666555554322 23344455666666
Q ss_pred cCCHHHHHHHHhcCCC-CCceecHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC---ChH
Q 047992 548 SGNIVYSRTIFDGMSS-KDIITWNSLICGYVLH-----GFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAG---MVD 618 (868)
Q Consensus 548 ~g~~~~A~~~f~~~~~-~d~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~ 618 (868)
.++.++|.+.|++..+ .+..++..+...|... ++.++|+..|++..+.| +...+..+...+...| +.+
T Consensus 272 ~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~ 348 (490)
T 2xm6_A 272 AKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHK 348 (490)
T ss_dssp SCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHH
Confidence 7788888888876653 4556677777777776 88899999999888854 3345555555665556 788
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHHHhhhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 047992 619 LGKKVFCSITECYQIIPMIEHYSAMIDLYGR----SGKLEEAMEFIEDMPIEPDSSIWEALLTACRI----HGNIDLAVL 690 (868)
Q Consensus 619 ~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r----~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~----~~~~~~a~~ 690 (868)
+|..+|+...+. .+...+..+..+|.. .+++++|.+.+++.--..++..|..|...+.. .+|.+.|..
T Consensus 349 ~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 424 (490)
T 2xm6_A 349 KAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWA 424 (490)
T ss_dssp HHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 899999888763 356677778888877 88999999999987333467788888888877 899999999
Q ss_pred HHHHHhccCCC---CchhHHHHHHHHhh
Q 047992 691 AIERLFDLEPG---DVLIQRLILQIYAI 715 (868)
Q Consensus 691 ~~~~~~~l~p~---~~~~~~~l~~~y~~ 715 (868)
.++++++.+|+ ++.+...|+.++..
T Consensus 425 ~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 425 WFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 99999999954 77777778777664
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.67 E-value=1.9e-15 Score=163.86 Aligned_cols=255 Identities=13% Similarity=0.098 Sum_probs=200.5
Q ss_pred HhcCCHHHHHH-HHHhcccCCCCCC--CeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhch
Q 047992 440 IQNGNEDEAVD-LFQRMGKNDKVKR--NTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVAS 516 (868)
Q Consensus 440 ~~~g~~~~A~~-~f~~m~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 516 (868)
...|++++|.. .|++........| +...|..+...+.+.|++++|+..|+++... .|
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p------------------ 95 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DP------------------ 95 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CT------------------
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CC------------------
Confidence 34578888888 8886654432222 3566777888888888888888888887643 12
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHH
Q 047992 517 NKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMK 593 (868)
Q Consensus 517 ~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 593 (868)
.+..++..+...|.+.|++++|...|+++. +.+..+|..+...|...|++++|++.|+++.
T Consensus 96 ----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 159 (368)
T 1fch_A 96 ----------------KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWL 159 (368)
T ss_dssp ----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------------CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 255567788899999999999999999764 5678899999999999999999999999999
Q ss_pred HCCCCCCHHHHHH----------------HHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHH
Q 047992 594 SFGLKPNRGTFLS----------------IILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAM 657 (868)
Q Consensus 594 ~~g~~p~~~t~~~----------------ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~ 657 (868)
. ..|+...... .+..+...|++++|..+|+.+.+.....++...+..+..++.+.|++++|.
T Consensus 160 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 237 (368)
T 1fch_A 160 R--YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV 237 (368)
T ss_dssp H--TSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred H--hCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 8 4565432221 234444899999999999999886554445788999999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 658 EFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 658 ~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
+.++++ ...| +..+|..+...+...|+++.|...++++++++|+++.++..++.+|...|++++|.+..+...+.
T Consensus 238 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 238 DCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999987 3344 46799999999999999999999999999999999999999999999999999999987776543
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.66 E-value=3e-16 Score=170.14 Aligned_cols=256 Identities=12% Similarity=0.047 Sum_probs=173.1
Q ss_pred eehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHH
Q 047992 430 ITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPA 509 (868)
Q Consensus 430 ~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 509 (868)
..+..+...+.+.|++++|...|+++.+.. +.+..+|..+...|.+.|++++|+..|+++... .|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p----------- 130 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QP----------- 130 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT-----------
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC-----------
Confidence 335555555555566666666665554433 344555556666666666666666666555431 11
Q ss_pred HhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CC----------ceecHHHHHHH
Q 047992 510 CAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSS---KD----------IITWNSLICGY 576 (868)
Q Consensus 510 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~d----------~~~~~~li~~~ 576 (868)
.+..++..++..|.+.|++++|...|+++.. .+ ...++.+...|
T Consensus 131 -----------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~ 187 (365)
T 4eqf_A 131 -----------------------NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSP 187 (365)
T ss_dssp -----------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC------------------
T ss_pred -----------------------CCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHH
Confidence 1233445555555666666666666555432 11 22334457778
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCCh
Q 047992 577 VLHGFWHAALDLFDQMKSFGLKPN---RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKL 653 (868)
Q Consensus 577 ~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~ 653 (868)
...|++++|++.|+++.+ ..|+ ..++..+...+...|++++|..+|+.+.+.. +.+...|..+..+|.+.|++
T Consensus 188 ~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~ 263 (365)
T 4eqf_A 188 VDSSVLEGVKELYLEAAH--QNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRS 263 (365)
T ss_dssp -CCHHHHHHHHHHHHHHH--HSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCH
T ss_pred hhhhhHHHHHHHHHHHHH--hCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCH
Confidence 888888888888888888 3454 5777888888888899999999988887742 23466788899999999999
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC------------CchhHHHHHHHHhhcCCC
Q 047992 654 EEAMEFIEDM-PIEPD-SSIWEALLTACRIHGNIDLAVLAIERLFDLEPG------------DVLIQRLILQIYAICGKP 719 (868)
Q Consensus 654 ~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~------------~~~~~~~l~~~y~~~g~~ 719 (868)
++|.+.++++ ...|+ ..+|..+..++...|+++.|...+++++++.|+ +...|..|+.+|...|+.
T Consensus 264 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 264 EEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 9999999887 34454 668999999999999999999999999999987 467889999999999999
Q ss_pred hhHHHHHH
Q 047992 720 EDALKVRK 727 (868)
Q Consensus 720 ~~a~~~~~ 727 (868)
+.+.++.+
T Consensus 344 ~~a~~~~~ 351 (365)
T 4eqf_A 344 ELFQAANL 351 (365)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99888754
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=1.6e-14 Score=162.49 Aligned_cols=363 Identities=11% Similarity=0.022 Sum_probs=231.5
Q ss_pred CccHHHHHHHHHHcCCCHHHHHHHHHhcCC------------CCeehHHHHHHHHHhcCChhHHHHHHHHhHhC-----C
Q 047992 362 DVLVGNSLINMYSKCEELEAAERVFDMIKD------------KDVYSWNSMIAGYCQAGYCGKAYELFIKMQES-----D 424 (868)
Q Consensus 362 ~~~~~~~li~~y~~~g~~~~A~~vf~~~~~------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g 424 (868)
....+|.|...|...|+.++|.+.|++..+ ...++|+.+...|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 345677777778888888888777765421 23457888888888888888888888776532 1
Q ss_pred -CCC-CeeehhhHHHHHHhc--CCHHHHHHHHHhcccCCCCCCCeeehhhhHHH---HHhcCChhHHHHHHHHhhcCCCC
Q 047992 425 -VPP-NVITWNVLISGYIQN--GNEDEAVDLFQRMGKNDKVKRNTASWNSLIAG---YQQLGQKNNALGVFRKMQSSCFY 497 (868)
Q Consensus 425 -~~p-~~~t~~~li~~~~~~--g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~ 497 (868)
..+ ...++..+..++.+. +++++|...|++..+.. |.++..+..+... +...++.++|++.+++... +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~--l~ 205 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR--LN 205 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH--HC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh--cC
Confidence 011 122344444444443 46889999999887654 3445555555544 3446777888888888765 34
Q ss_pred CC-HHhHHHHHHHHh----chhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceec
Q 047992 498 PN-CVTILSVLPACA----YLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITW 569 (868)
Q Consensus 498 p~-~~t~~~ll~a~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~ 569 (868)
|+ ...+..+...+. ..+..+.+.+.+..+++.. +.+..++..+...|.+.|++++|...|++.. +.+...|
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 284 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHH
Confidence 44 333333333333 3356677888888777742 3367778889999999999999999998764 4456667
Q ss_pred HHHHHHHHhc-------------------CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhh
Q 047992 570 NSLICGYVLH-------------------GFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITE 629 (868)
Q Consensus 570 ~~li~~~~~~-------------------g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 629 (868)
..+...|... +..++|+..|++..+ ..|+. .++..+...+...|++++|..+|+...+
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE--ANDNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH--HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh--cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 7776665432 335778888888887 55654 6777888889999999999999998876
Q ss_pred hcCCCCChh----HHHHHHH-hhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 047992 630 CYQIIPMIE----HYSAMID-LYGRSGKLEEAMEFIEDM-PIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDV 703 (868)
Q Consensus 630 ~~~~~p~~~----~y~~lvd-~l~r~g~~~eA~~~i~~~-~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 703 (868)
+.|+.. .+..+.. .+...|+.++|++.+++. .+.|+...+... .+.++.++++.++.+|+++
T Consensus 363 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~ 430 (472)
T 4g1t_A 363 ---KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGADS 430 (472)
T ss_dssp ---SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CT
T ss_pred ---cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCH
Confidence 233322 1223333 235689999999999887 677776554433 3456678889999999999
Q ss_pred hhHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCCCcccEE
Q 047992 704 LIQRLILQIYAICGKPEDALKVRKLERENTRRNSFGQCWI 743 (868)
Q Consensus 704 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i 743 (868)
.+|..|+.+|...|++++|.+..+...+.|-.-....||+
T Consensus 431 ~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 431 EALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp THHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 9999999999999999999998887766654444445554
No 31
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.63 E-value=3.2e-13 Score=152.55 Aligned_cols=350 Identities=13% Similarity=-0.008 Sum_probs=251.2
Q ss_pred CccHHHHHHHHHHc----CCCHHHHHHHHHhcCC-CCeehHHHHHHHHHh----cCChhHHHHHHHHhHhCCCCCCeeeh
Q 047992 362 DVLVGNSLINMYSK----CEELEAAERVFDMIKD-KDVYSWNSMIAGYCQ----AGYCGKAYELFIKMQESDVPPNVITW 432 (868)
Q Consensus 362 ~~~~~~~li~~y~~----~g~~~~A~~vf~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~ 432 (868)
+......|..+|.. .+++++|...|+...+ .+..++..+...|.. .++.++|++.|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 34444555555555 5666666666665433 344556666666666 666667777666666554 44555
Q ss_pred hhHHHHHHh----cCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHh----cCChhHHHHHHHHhhcCCCCCCHHhHH
Q 047992 433 NVLISGYIQ----NGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQ----LGQKNNALGVFRKMQSSCFYPNCVTIL 504 (868)
Q Consensus 433 ~~li~~~~~----~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~ 504 (868)
..|...|.. .+++++|...|++..+.+ +...+..|...|.. .++.++|++.|++..+.| +...+.
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 556666665 566777777777665432 44555566666665 566777777777666543 333444
Q ss_pred HHHHHHhc----hhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhcCC-CCCceecHHHHHH
Q 047992 505 SVLPACAY----LVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAK----SGNIVYSRTIFDGMS-SKDIITWNSLICG 575 (868)
Q Consensus 505 ~ll~a~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~~~-~~d~~~~~~li~~ 575 (868)
.+-..+.. .++.+.+...+....+.+ ++.....|..+|.. .++.++|.+.|++.. ..+..++..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44444443 566777777777766643 56677788888886 899999999999765 4566778888888
Q ss_pred HHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc-----CChHHHHHHHHHhhhhcCCCCChhHHHHHHHh
Q 047992 576 YVL----HGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLA-----GMVDLGKKVFCSITECYQIIPMIEHYSAMIDL 646 (868)
Q Consensus 576 ~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~ 646 (868)
|.. .++.++|++.|++..+.| +...+..+...+... ++.++|..+|+...+. .+...+..+..+
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHH
Confidence 887 899999999999998754 344556666666666 8999999999988773 234567778888
Q ss_pred hhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhh----
Q 047992 647 YGRSG---KLEEAMEFIEDMPIEPDSSIWEALLTACRI----HGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAI---- 715 (868)
Q Consensus 647 l~r~g---~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~----~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~---- 715 (868)
|.+.| ++++|.+.+++.--..++..|..|...+.. .+|.+.|...++++.+.+ ++.++..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 87767 889999999988434678889999999888 899999999999999865 68899999999999
Q ss_pred cCCChhHHHHHHHHHhcC
Q 047992 716 CGKPEDALKVRKLERENT 733 (868)
Q Consensus 716 ~g~~~~a~~~~~~m~~~~ 733 (868)
.++.++|.+..+...+.+
T Consensus 416 ~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTND 433 (490)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC
Confidence 899999999888777665
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.63 E-value=4.3e-15 Score=157.88 Aligned_cols=254 Identities=11% Similarity=0.038 Sum_probs=176.7
Q ss_pred hhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHh
Q 047992 432 WNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACA 511 (868)
Q Consensus 432 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 511 (868)
+..+...+...|++++|..+|+++.+.. +.+...|..+...+...|++++|...|+++...
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----------------- 84 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARML----------------- 84 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----------------
Confidence 3344444455555555555555544332 233344444455555555555555555544321
Q ss_pred chhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHH--------------HH
Q 047992 512 YLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSL--------------IC 574 (868)
Q Consensus 512 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~l--------------i~ 574 (868)
.+.+..++..+...|.+.|++++|.+.|+++. +.+...+..+ ..
T Consensus 85 -------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (327)
T 3cv0_A 85 -------------------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSED 145 (327)
T ss_dssp -------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------
T ss_pred -------------------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHh
Confidence 11234445556666666666666666666543 2223333332 22
Q ss_pred -HHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCC
Q 047992 575 -GYVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGK 652 (868)
Q Consensus 575 -~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~ 652 (868)
.+...|++++|++.|+++.+. .| +...+..+...+...|++++|..+|+.+.+.. +.+...+..+..++.+.|+
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 221 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEM--NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNR 221 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCC
Confidence 367788899999999999884 45 45778888888999999999999999988742 2346778899999999999
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC------------CchhHHHHHHHHhhcCC
Q 047992 653 LEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPG------------DVLIQRLILQIYAICGK 718 (868)
Q Consensus 653 ~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~------------~~~~~~~l~~~y~~~g~ 718 (868)
+++|.+.++++ ...| +..+|..+...+...|+++.|...+++++++.|+ ++..+..++.+|...|+
T Consensus 222 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 222 PQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301 (327)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence 99999999987 3334 5678999999999999999999999999999999 78999999999999999
Q ss_pred ChhHHHHHH
Q 047992 719 PEDALKVRK 727 (868)
Q Consensus 719 ~~~a~~~~~ 727 (868)
+++|..+.+
T Consensus 302 ~~~A~~~~~ 310 (327)
T 3cv0_A 302 PDLVELTYA 310 (327)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 999998754
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.60 E-value=3.9e-14 Score=159.29 Aligned_cols=391 Identities=14% Similarity=0.029 Sum_probs=210.6
Q ss_pred cChhhHHHHHHHHHhcCChHHHHHHHHHHHhc-----C--CCC-CeeeHHHHHHHHHhcCChhHHHHHHHHHHhCC---c
Q 047992 256 LGVVTFNILIRSYNQLGQCDVAMEMVKRMESL-----G--ITP-DVFTWTCMISGFAQNGRTSQALDLFKEMSFVG---V 324 (868)
Q Consensus 256 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~ 324 (868)
.....||.|...|...|+.++|++.|++..+. + ..| ...+|+.+...|...|++++|...+++..... .
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567888888888888888888888776432 1 112 34677777888888888888888777664311 0
Q ss_pred cCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHc--CCCHHHHHHHHHhcCC--C-CeehHHH
Q 047992 325 MPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSK--CEELEAAERVFDMIKD--K-DVYSWNS 399 (868)
Q Consensus 325 ~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~--~g~~~~A~~vf~~~~~--~-~~~~~~~ 399 (868)
.|.. .....++..+..++.+ .+++++|...|++..+ | ++..+..
T Consensus 129 ~~~~-------------------------------~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~ 177 (472)
T 4g1t_A 129 SPYR-------------------------------IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSG 177 (472)
T ss_dssp CSSC-------------------------------CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred cccc-------------------------------hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 0000 0011122222222222 3346666666665432 2 3334444
Q ss_pred HHHH---HHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHH----hcCCHHHHHHHHHhcccCCCCCCCeeehhhhH
Q 047992 400 MIAG---YCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYI----QNGNEDEAVDLFQRMGKNDKVKRNTASWNSLI 472 (868)
Q Consensus 400 li~~---~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~----~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li 472 (868)
+... +...++.++|++.|++..+.. +.+..++..+...+. ..|++++|.+.+++..... +.+...+..+.
T Consensus 178 ~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~lg 254 (472)
T 4g1t_A 178 LAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--PGVTDVLRSAA 254 (472)
T ss_dssp HHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC--SSCHHHHHHHH
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--ccHHHHHHHHH
Confidence 4333 334566777777777776553 223344444443333 3466778888888776543 55666778888
Q ss_pred HHHHhcCChhHHHHHHHHhhcCCCCCCHHh-HHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 047992 473 AGYQQLGQKNNALGVFRKMQSSCFYPNCVT-ILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNI 551 (868)
Q Consensus 473 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~ 551 (868)
..|...|++++|+..+++..+ ..|+... +..+-..+...+ .... . . ............+..
T Consensus 255 ~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~y~~~~-----~~~~----~--~-----~~~~~~~~~~~~~~~ 316 (472)
T 4g1t_A 255 KFYRRKDEPDKAIELLKKALE--YIPNNAYLHCQIGCCYRAKV-----FQVM----N--L-----RENGMYGKRKLLELI 316 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHH-----HHHH----H--C-----------CHHHHHHHH
T ss_pred HHHHHcCchHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHH-----HHhh----h--H-----HHHHHHHHHHHHhhH
Confidence 888888888888888888764 3454332 222211111100 0000 0 0 000111111122345
Q ss_pred HHHHHHHhcC---CCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HhhccCChHHHHHHHH
Q 047992 552 VYSRTIFDGM---SSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRG--TFLSIIL-AHSLAGMVDLGKKVFC 625 (868)
Q Consensus 552 ~~A~~~f~~~---~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~ 625 (868)
+.|...|++. .+.+..+|..+...|...|++++|++.|++.++....|... .+..+.. ...+.|+.++|+..|.
T Consensus 317 ~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~ 396 (472)
T 4g1t_A 317 GHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFI 396 (472)
T ss_dssp HHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6777777754 35677889999999999999999999999999843333221 2222222 3457899999999999
Q ss_pred HhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 047992 626 SITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDV 703 (868)
Q Consensus 626 ~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 703 (868)
...+ +.|+.....- .++.+.+++++. ...| ++.+|..|...+...|+++.|...++++++++|.+|
T Consensus 397 kal~---i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 397 EGVK---INQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP 464 (472)
T ss_dssp HHHH---SCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------
T ss_pred HHHh---cCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 8776 5565433222 223344444433 2233 455899999999999999999999999999999998
Q ss_pred hhHHHHH
Q 047992 704 LIQRLIL 710 (868)
Q Consensus 704 ~~~~~l~ 710 (868)
.++.-++
T Consensus 465 ~a~~~~G 471 (472)
T 4g1t_A 465 SASSWNG 471 (472)
T ss_dssp -------
T ss_pred cHhhcCC
Confidence 8776554
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.60 E-value=7.8e-16 Score=175.73 Aligned_cols=132 Identities=11% Similarity=0.081 Sum_probs=117.9
Q ss_pred ccChhhHHHHHHHHHhcCChHHHHHHHHHHH---hcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccH
Q 047992 255 KLGVVTFNILIRSYNQLGQCDVAMEMVKRME---SLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTI 331 (868)
Q Consensus 255 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 331 (868)
..-..|||+||++|++.|++++|.++|++|. ..|+.||++|||+||.+|++.|++++|.++|++|...|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3345799999999999999999999998876 4589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhchhh-HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHH
Q 047992 332 TSAISACTDLKA-LAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVF 386 (868)
Q Consensus 332 ~~ll~a~~~~~~-~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf 386 (868)
+++|.++++.|. .+.|.+++.+|.+.|+.||..+|+.+++.+.+.+-++...+++
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~ 259 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVK 259 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhC
Confidence 999999999997 5789999999999999999999999987766655554444443
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.57 E-value=8.5e-14 Score=147.79 Aligned_cols=263 Identities=16% Similarity=0.116 Sum_probs=129.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHH
Q 047992 396 SWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGY 475 (868)
Q Consensus 396 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~ 475 (868)
.|..+...+...|++++|+.+|+++.+.. +.+..++..+...|.+.|++++|...|+++.+.. +.+..+|..+...|
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSH 99 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHHHHH
Confidence 34444555555555555555555555432 2234445555555566666666666666554432 33445555566666
Q ss_pred HhcCChhHHHHHHHHhhcCCCCCCHHhHHHHH--------------HH--HhchhchHHHHHHHHHHHHhCCCCChhHHH
Q 047992 476 QQLGQKNNALGVFRKMQSSCFYPNCVTILSVL--------------PA--CAYLVASNKVKEIHGCVLRRSLESSLPVMN 539 (868)
Q Consensus 476 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll--------------~a--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 539 (868)
...|++++|+..++++... .|+.......+ .. +...|+.+.+...+..+++.. +.+..++.
T Consensus 100 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 6666666666666665532 22222111111 21 344445555555555544421 11344444
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCC
Q 047992 540 SLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGM 616 (868)
Q Consensus 540 ~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 616 (868)
.+...|.+.|++++|.+.|+++. +.+...|..+...|...|++++|++.|+++.+ ..|+
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~---------------- 238 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD--INPG---------------- 238 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT----------------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCC----------------
Confidence 55555555555555555554332 22334444444444445555555555544444 2222
Q ss_pred hHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-------------CHHHHHHHHHHHHhc
Q 047992 617 VDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-------------DSSIWEALLTACRIH 682 (868)
Q Consensus 617 ~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-------------~~~~w~~ll~a~~~~ 682 (868)
+...+..+..++.+.|++++|.+.++++ ...| +..+|..+..++...
T Consensus 239 -------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (327)
T 3cv0_A 239 -------------------YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM 299 (327)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT
T ss_pred -------------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc
Confidence 2334444555555555555555555544 1122 244666666666677
Q ss_pred CCHHHHHHHHHHHhccCCC
Q 047992 683 GNIDLAVLAIERLFDLEPG 701 (868)
Q Consensus 683 ~~~~~a~~~~~~~~~l~p~ 701 (868)
|+.+.|...++++++..|+
T Consensus 300 g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 300 NRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp TCHHHHHHHTTCCSHHHHH
T ss_pred CCHHHHHHHHHHHHHhcch
Confidence 7777777766666655443
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.53 E-value=1.2e-13 Score=137.04 Aligned_cols=191 Identities=16% Similarity=0.132 Sum_probs=157.2
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 047992 532 ESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSI 607 (868)
Q Consensus 532 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~l 607 (868)
+++...+..+...|.+.|++++|...|++.. +.+...|..+...+.+.|++++|+..|++..+ ..|+. ..+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 3466778889999999999999999999754 45778899999999999999999999999998 67765 677788
Q ss_pred HHHhhcc-----------CChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHHHHHH
Q 047992 608 ILAHSLA-----------GMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSSIWEA 674 (868)
Q Consensus 608 l~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~~w~~ 674 (868)
..++... |+.++|+..|+...+. .|+ ...+..+..+|...|++++|++.+++. ....++.+|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8888888 9999999999998873 443 567888999999999999999999987 22277889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHH
Q 047992 675 LLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRK 727 (868)
Q Consensus 675 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 727 (868)
+..++...|+++.|...++++++++|+++..+..++.+|...|++++|.+..+
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988765
No 37
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.52 E-value=4.4e-13 Score=139.46 Aligned_cols=220 Identities=11% Similarity=0.099 Sum_probs=139.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCee-ehhhHHHHHHhcCCH
Q 047992 367 NSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVI-TWNVLISGYIQNGNE 445 (868)
Q Consensus 367 ~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~li~~~~~~g~~ 445 (868)
..+..+|...|+++.|...++....++..++..+...+...++.++|++.++++...+..|+.. .+..+...|.+.|++
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~ 117 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNP 117 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCH
Confidence 3456678888888888877766544556677777888888888888999988888776556543 445566788889999
Q ss_pred HHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHH
Q 047992 446 DEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGC 525 (868)
Q Consensus 446 ~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~ 525 (868)
++|++.|++ +.+...+..++..|.+.|++++|...|+++... .|+... ..+
T Consensus 118 ~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~-~~l------------------- 168 (291)
T 3mkr_A 118 DAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATL-TQL------------------- 168 (291)
T ss_dssp HHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH-HHH-------------------
T ss_pred HHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHH-HHH-------------------
Confidence 999998887 356778888888899999999999999888754 354321 111
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-
Q 047992 526 VLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR- 601 (868)
Q Consensus 526 ~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~- 601 (868)
..+++.++...|++++|..+|+++. +.+...|+.+..++.+.|++++|++.|++.++ ..|+.
T Consensus 169 ------------~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~--~~p~~~ 234 (291)
T 3mkr_A 169 ------------ATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD--KDSGHP 234 (291)
T ss_dssp ------------HHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred ------------HHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCH
Confidence 1122233333455555555555442 23444555555555555555555555555555 34432
Q ss_pred HHHHHHHHHhhccCChHH-HHHHHHHhhh
Q 047992 602 GTFLSIILAHSLAGMVDL-GKKVFCSITE 629 (868)
Q Consensus 602 ~t~~~ll~a~~~~g~~~~-a~~~~~~m~~ 629 (868)
.++..+...+.+.|..++ +.++++.+.+
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 444455555555555543 3455555544
No 38
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.50 E-value=9.4e-14 Score=143.48 Aligned_cols=242 Identities=12% Similarity=-0.056 Sum_probs=174.7
Q ss_pred hcCCHHHHHHHHHhcccCCCC--CCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHH
Q 047992 441 QNGNEDEAVDLFQRMGKNDKV--KRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNK 518 (868)
Q Consensus 441 ~~g~~~~A~~~f~~m~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 518 (868)
..|++++|+..|+++.+.... +.+...|..+...+...|++++|+..|+++.
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-------------------------- 70 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL-------------------------- 70 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------------------
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHH--------------------------
Confidence 345566666666655443211 1133445555555555555555555555543
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHC
Q 047992 519 VKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSF 595 (868)
Q Consensus 519 ~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 595 (868)
+. .+.+..++..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|++.|+++.+
T Consensus 71 ---------~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~- 139 (275)
T 1xnf_A 71 ---------AI-RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ- 139 (275)
T ss_dssp ---------HH-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred ---------Hc-CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH-
Confidence 32 12356677888899999999999999998764 45678899999999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-----H
Q 047992 596 GLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-----S 669 (868)
Q Consensus 596 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-----~ 669 (868)
..|+.......+..+...|+.++|..+|+...... .++...+ .++..+...+..++|.+.+++. ...|+ .
T Consensus 140 -~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 215 (275)
T 1xnf_A 140 -DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLS 215 (275)
T ss_dssp -HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred -hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhccccccccccc
Confidence 66777666666666778899999999998877643 3333344 4677777888889999999887 33332 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHH
Q 047992 670 SIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVR 726 (868)
Q Consensus 670 ~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 726 (868)
.+|..+...+...|+++.|...++++++++|++...+ +..+...|++++|.+-.
T Consensus 216 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 216 ETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 6888999999999999999999999999999876554 66778888888876643
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.49 E-value=5.1e-13 Score=137.72 Aligned_cols=254 Identities=14% Similarity=0.038 Sum_probs=135.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCee----ehhhhH
Q 047992 397 WNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTA----SWNSLI 472 (868)
Q Consensus 397 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~----~~~~li 472 (868)
+......+...|++++|+..|++..+.. +.+...+..+...|...|++++|...|++..+.. ++.. .|..+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV---NATKAKSADFEYYG 81 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS---CTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc---CchhHHHHHHHHHH
Confidence 3444455555555555555555555442 1123345555555555555555555555554421 1111 134444
Q ss_pred HHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 047992 473 AGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIV 552 (868)
Q Consensus 473 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~ 552 (868)
..|...|++++|+..|++.. +. .+.+..++..+...|.+.|+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~-----------------------------------~~-~~~~~~~~~~l~~~~~~~~~~~ 125 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAV-----------------------------------DR-DTTRLDMYGQIGSYFYNKGNFP 125 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHH-----------------------------------HH-STTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHH-----------------------------------hc-CcccHHHHHHHHHHHHHccCHH
Confidence 44444444444444444443 21 1224556667777777777777
Q ss_pred HHHHHHhcCCC---CCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCC---hHHHHHHHH
Q 047992 553 YSRTIFDGMSS---KDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGM---VDLGKKVFC 625 (868)
Q Consensus 553 ~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~---~~~a~~~~~ 625 (868)
+|...|++... .+...|..+...+...+++++|++.|+++.+ ..|+. ..+..+..++...|. .++|...|+
T Consensus 126 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 203 (272)
T 3u4t_A 126 LAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYE 203 (272)
T ss_dssp HHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHH
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHH
Confidence 77777766542 3444555555233334467777777777666 44543 344444444444444 444544444
Q ss_pred HhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh
Q 047992 626 SITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLI 705 (868)
Q Consensus 626 ~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 705 (868)
...+...-.|+.. -. .-..+|..+...+...|+++.|...++++++++|+|+.+
T Consensus 204 ~a~~~~~~~~~~~-~~-------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 257 (272)
T 3u4t_A 204 KLIEVCAPGGAKY-KD-------------------------ELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKA 257 (272)
T ss_dssp HHHHHHGGGGGGG-HH-------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHhcccccc-hH-------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHH
Confidence 4333211111110 00 002367778888889999999999999999999999999
Q ss_pred HHHHHHHHhhcCC
Q 047992 706 QRLILQIYAICGK 718 (868)
Q Consensus 706 ~~~l~~~y~~~g~ 718 (868)
+-.+..+....+.
T Consensus 258 ~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 258 IDGLKMKLEHHHH 270 (272)
T ss_dssp HHHHC--------
T ss_pred HHHhhhhhccccc
Confidence 8888777655543
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.2e-12 Score=133.61 Aligned_cols=188 Identities=9% Similarity=-0.012 Sum_probs=148.9
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CC-------ceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 047992 533 SSLPVMNSLIDTYAKSGNIVYSRTIFDGMSS---KD-------IITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRG 602 (868)
Q Consensus 533 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~d-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 602 (868)
.+..++..+...|.+.|++++|...|++... .+ ...|..+...|...|++++|++.|+++.+ +.|+..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~ 113 (258)
T 3uq3_A 36 KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTAD 113 (258)
T ss_dssp CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchhH
Confidence 4555667777788888888888888876542 12 46788888888889999999999998888 556643
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHH
Q 047992 603 TFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIE-PDSSIWEALLTACR 680 (868)
Q Consensus 603 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~-p~~~~w~~ll~a~~ 680 (868)
.+...|++++|...++.+... .+.+...+..+..++.+.|++++|.+.++++ ... .+..+|..+...+.
T Consensus 114 -------~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 184 (258)
T 3uq3_A 114 -------ILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA 184 (258)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred -------HHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 345568888999998887762 2223456788888899999999999999887 333 35678888999999
Q ss_pred hcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 681 IHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 681 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
..|+++.|...++++++++|+++..|..++.+|...|++++|.+..+...+
T Consensus 185 ~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 185 KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999997766543
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.46 E-value=1.2e-12 Score=133.60 Aligned_cols=237 Identities=10% Similarity=0.015 Sum_probs=179.3
Q ss_pred ehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHH
Q 047992 431 TWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPAC 510 (868)
Q Consensus 431 t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 510 (868)
.|..+...|...|++++|...|++..+.. .+...|..+...|...|++++|+..+++.... .|+
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~----------- 70 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQ--GRE----------- 70 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHH-----------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--Ccc-----------
Confidence 45566666777777777777777766543 45566666667777777777777776665431 010
Q ss_pred hchhchHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHH
Q 047992 511 AYLVASNKVKEIHGCVLRRSLESS----LPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAAL 586 (868)
Q Consensus 511 ~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~ 586 (868)
..++ ..++..+...|.+.|++++|...|++....+.. ...+...|+.++|+
T Consensus 71 --------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~ 125 (258)
T 3uq3_A 71 --------------------MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKEL 125 (258)
T ss_dssp --------------------TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHH
T ss_pred --------------------cccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHH
Confidence 1111 456778888999999999999999876532211 34577788999999
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-C
Q 047992 587 DLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-P 664 (868)
Q Consensus 587 ~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~ 664 (868)
+.++++.. ..|+. ..+..+...+...|+.++|..+|+...+... .+...|..+..++.+.|++++|.+.++++ .
T Consensus 126 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 126 KKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP--EDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999988 56655 6677788888999999999999999887432 34677889999999999999999999987 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC------CCCchhHHHHHHH
Q 047992 665 IEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLE------PGDVLIQRLILQI 712 (868)
Q Consensus 665 ~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~------p~~~~~~~~l~~~ 712 (868)
..| +..+|..+..++...|+.+.|...++++++++ |++...+..|+.+
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 344 46689999999999999999999999999999 8888777777654
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.42 E-value=3.9e-12 Score=129.38 Aligned_cols=196 Identities=8% Similarity=-0.073 Sum_probs=159.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 047992 535 LPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSIILA 610 (868)
Q Consensus 535 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a 610 (868)
...+..+...|...|++++|.+.|+++. +.+...|..+...|...|++++|++.|+++.+. .| +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHH
Confidence 4567778888888899888888888754 456678888888888999999999999988873 45 45677777788
Q ss_pred hhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 047992 611 HSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDL 687 (868)
Q Consensus 611 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~ 687 (868)
+...|++++|..+|+.+.+ .+..| +...+..+..++.+.|++++|.+.++++ ...| +..+|..+...+...|+++.
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 8889999999999988876 33445 3556778888888999999999998886 3333 46688888888889999999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcC
Q 047992 688 AVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENT 733 (868)
Q Consensus 688 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 733 (868)
|...++++++..|++...+..++.+|...|++++|.+..+.+.+..
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999888776543
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.42 E-value=6.5e-12 Score=124.96 Aligned_cols=196 Identities=12% Similarity=0.029 Sum_probs=161.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSIIL 609 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~ 609 (868)
++.++..++..|...|++++|.+.|+++. +.+...|..+...|...|++++|++.|+++.+ ..| +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS--IKPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCChHHHHHHHH
Confidence 55667788888899999999999888654 45677888888889999999999999999887 345 4567777888
Q ss_pred Hhhcc-CChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 047992 610 AHSLA-GMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNI 685 (868)
Q Consensus 610 a~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~ 685 (868)
.+... |++++|..+|+.+.+ .+..|+ ...+..+..++.+.|++++|.+.++++ ...| +...|..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 88888 999999999998887 334444 567788888899999999999998887 3334 466888888888999999
Q ss_pred HHHHHHHHHHhccCC-CCchhHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 686 DLAVLAIERLFDLEP-GDVLIQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 686 ~~a~~~~~~~~~l~p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
+.|...++++++++| +++..+..++.+|...|+++++....+.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999999999999 88999999999999999999999888877654
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.41 E-value=1.5e-12 Score=140.10 Aligned_cols=178 Identities=11% Similarity=0.068 Sum_probs=130.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIIL 609 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~ 609 (868)
+..+++.+..+|.+.|++++|...|+++. +.+...|+.+..++...|++++|++.|+++++ +.|+. ..|..+..
T Consensus 165 ~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~ 242 (382)
T 2h6f_A 165 NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYF 242 (382)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 44455666666666666666666666543 45667788888888888888888888888887 56644 66777777
Q ss_pred Hhhc-cCChHHH-----HHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcC--ChHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 047992 610 AHSL-AGMVDLG-----KKVFCSITECYQIIPM-IEHYSAMIDLYGRSG--KLEEAMEFIEDMPIEPD-SSIWEALLTAC 679 (868)
Q Consensus 610 a~~~-~g~~~~a-----~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g--~~~eA~~~i~~~~~~p~-~~~w~~ll~a~ 679 (868)
++.. .|..++| +.+|+...+ +.|+ ...|..+..+|...| ++++|+++++++...|+ ..++..|...+
T Consensus 243 ~l~~l~~~~~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~ 319 (382)
T 2h6f_A 243 VISNTTGYNDRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 319 (382)
T ss_dssp HHHHTTCSCSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 7777 5665777 477777665 3443 456777778888888 68999999988755565 45778888888
Q ss_pred HhcC--------C-HHHHHHHHHHH-hccCCCCchhHHHHHHHHhhc
Q 047992 680 RIHG--------N-IDLAVLAIERL-FDLEPGDVLIQRLILQIYAIC 716 (868)
Q Consensus 680 ~~~~--------~-~~~a~~~~~~~-~~l~p~~~~~~~~l~~~y~~~ 716 (868)
...| + ++.|..+++++ .+++|.....|..++..+...
T Consensus 320 ~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 320 EDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 7763 3 59999999999 999999999999988776543
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.41 E-value=1.3e-11 Score=125.63 Aligned_cols=207 Identities=15% Similarity=0.049 Sum_probs=163.6
Q ss_pred eeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 047992 465 TASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDT 544 (868)
Q Consensus 465 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~ 544 (868)
...|..+...+...|++++|+..|+++... .+.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------------------------------------~~~~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI------------------------------------DPSSADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH------------------------------------CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc------------------------------------CCChHHHHHHHHHH
Confidence 344556666777777777777777776532 12245567778888
Q ss_pred HHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHH
Q 047992 545 YAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLG 620 (868)
Q Consensus 545 y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 620 (868)
|.+.|++++|.+.|+++. +.+...|..+...|...|++++|++.|+++.+.+..|+. ..+..+..++...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 888999999999888654 446678888889999999999999999999875456754 6677778888999999999
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 047992 621 KKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDL 698 (868)
Q Consensus 621 ~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l 698 (868)
..+|+.+.+.. ..+...+..++.++.+.|++++|.+.++++ ...| +...|..+...+...|+.+.|...+++++++
T Consensus 161 ~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 161 KEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999887743 234677889999999999999999999987 3344 5568888888899999999999999999999
Q ss_pred CCCCchhHHHH
Q 047992 699 EPGDVLIQRLI 709 (868)
Q Consensus 699 ~p~~~~~~~~l 709 (868)
.|+++.....+
T Consensus 239 ~p~~~~~~~~l 249 (252)
T 2ho1_A 239 YPGSLEYQEFQ 249 (252)
T ss_dssp CTTSHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 99988766544
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.40 E-value=2.6e-12 Score=129.76 Aligned_cols=214 Identities=12% Similarity=0.078 Sum_probs=127.3
Q ss_pred CeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 047992 464 NTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLID 543 (868)
Q Consensus 464 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~ 543 (868)
....|..+...+...|++++|...|+++... .| .+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~----------------------------------~~~~~~~~la~ 65 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NK----------------------------------EDAIPYINFAN 65 (243)
T ss_dssp --------------------CCTTHHHHHTT--CT----------------------------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--Cc----------------------------------ccHHHHHHHHH
Confidence 3445555666666667777777666666532 11 23444555666
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCChHH
Q 047992 544 TYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSIILAHSLAGMVDL 619 (868)
Q Consensus 544 ~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~ 619 (868)
.|.+.|++++|...|++.. +.+...|..+...|...|++++|++.|+++.+. .| +...+..+...+...|+.++
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~ 143 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKL 143 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHH
Confidence 6667777777777776543 345566777777777777777777777777763 33 34556666667777777777
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 047992 620 GKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIE-PDSSIWEALLTACRIHGNIDLAVLAIERLFD 697 (868)
Q Consensus 620 a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~-p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~ 697 (868)
|..+|+.+.+.. ..+...+..+..++.+.|++++|.+.++++ ... .+..+|..+...+...|+.+.|...++++++
T Consensus 144 A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 144 ALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 777777766532 224556677777777788888887777766 222 3455777777778888888888888888888
Q ss_pred cCCCCchhHHHHHHHHhhcC
Q 047992 698 LEPGDVLIQRLILQIYAICG 717 (868)
Q Consensus 698 l~p~~~~~~~~l~~~y~~~g 717 (868)
++|+++.++..++.+....|
T Consensus 222 ~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 222 IQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HCTTCHHHHHHHTC------
T ss_pred cCcchHHHHHHHHHHHhhcc
Confidence 88888777777766654433
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.40 E-value=8.2e-12 Score=124.24 Aligned_cols=209 Identities=11% Similarity=-0.045 Sum_probs=161.7
Q ss_pred CeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 047992 464 NTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLID 543 (868)
Q Consensus 464 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~ 543 (868)
+...|..+...+...|++++|+..|+++... .+.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------------------------------~~~~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS------------------------------------DPKNELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------------------CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh------------------------------------CccchHHHHHHHH
Confidence 3445566666666677777777766665432 1223456677788
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChH
Q 047992 544 TYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLH-GFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVD 618 (868)
Q Consensus 544 ~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~ 618 (868)
.|...|++++|.+.|++.. +.+...|..+...|... |++++|++.|+++.+.+..|+. ..+..+..++...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 8888888888888888654 45667888889999999 9999999999999884445654 66777888889999999
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047992 619 LGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIE--PDSSIWEALLTACRIHGNIDLAVLAIERL 695 (868)
Q Consensus 619 ~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~--p~~~~w~~ll~a~~~~~~~~~a~~~~~~~ 695 (868)
+|..+|+.+.+.. +.+...+..+..++.+.|++++|.+.++++ ... .+...|..+...+...|+.+.+...++.+
T Consensus 131 ~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 131 LAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 9999999887742 223667888999999999999999999987 333 35667777777778999999999999999
Q ss_pred hccCCCCchhHHHHH
Q 047992 696 FDLEPGDVLIQRLIL 710 (868)
Q Consensus 696 ~~l~p~~~~~~~~l~ 710 (868)
.+.+|+++.....+.
T Consensus 209 ~~~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 209 QANFPYSEELQTVLT 223 (225)
T ss_dssp HHHCTTCHHHHHHHC
T ss_pred HHhCCCCHHHHHHhc
Confidence 999999988877664
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.37 E-value=4.3e-12 Score=128.13 Aligned_cols=196 Identities=11% Similarity=0.063 Sum_probs=153.3
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 047992 533 SSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSII 608 (868)
Q Consensus 533 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll 608 (868)
.....+..+...|.+.|++++|...|+++. +.+...|..+...|...|++++|++.|+++.+. .| +...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHH
Confidence 345667788889999999999999999764 456778999999999999999999999999984 45 457788888
Q ss_pred HHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHH
Q 047992 609 LAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIE-PDSSIWEALLTACRIHGNID 686 (868)
Q Consensus 609 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~-p~~~~w~~ll~a~~~~~~~~ 686 (868)
..+...|+.++|..+|+.+.+.. ..+...+..+..++.+.|++++|.+.++++ ... .+..+|..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 89999999999999999988743 235667888999999999999999999987 333 45678999999999999999
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 687 LAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 687 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
.|...++++++.+|+++..+..++.+|...|++++|.+..+...+.
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999988877554
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.36 E-value=4.4e-11 Score=123.08 Aligned_cols=227 Identities=11% Similarity=0.041 Sum_probs=174.4
Q ss_pred cHHHHHHHHHHcCCCHHHHHHHHHhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCe--eehhhHHHH
Q 047992 364 LVGNSLINMYSKCEELEAAERVFDMIKD---KDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNV--ITWNVLISG 438 (868)
Q Consensus 364 ~~~~~li~~y~~~g~~~~A~~vf~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~li~~ 438 (868)
.........|.+.|++++|...|+...+ .+...|..+...|...|++++|++.|++..+.+..|+. .+|..+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3455677889999999999999998754 35668999999999999999999999999984422222 127888999
Q ss_pred HHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHH
Q 047992 439 YIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNK 518 (868)
Q Consensus 439 ~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 518 (868)
|...|++++|...|++..+.. +.+...|..+...|...|++++|+..|++.... .|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~-------------------- 139 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TT-------------------- 139 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SC--------------------
T ss_pred HHHcccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CC--------------------
Confidence 999999999999999998764 556678999999999999999999999988753 22
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHH-HHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCC---hHHHHHHHHH
Q 047992 519 VKEIHGCVLRRSLESSLPVMNSLI-DTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGF---WHAALDLFDQ 591 (868)
Q Consensus 519 ~~~i~~~~~~~~~~~~~~~~~~Li-~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~---~~~A~~l~~~ 591 (868)
.+..++..+. ..|.+ +++++|.+.|++.. +.+...|..+...+...|+ .++|+..|++
T Consensus 140 --------------~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 140 --------------TDPKVFYELGQAYYYN-KEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp --------------CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred --------------CcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 3566788888 55554 59999999999765 4456788888888888888 8889999999
Q ss_pred HHHCC-CCCCH------HHHHHHHHHhhccCChHHHHHHHHHhhh
Q 047992 592 MKSFG-LKPNR------GTFLSIILAHSLAGMVDLGKKVFCSITE 629 (868)
Q Consensus 592 m~~~g-~~p~~------~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 629 (868)
..+.. -.|+. ..+..+...+...|+.++|..+|+...+
T Consensus 205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA 249 (272)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88731 12432 2344445555556666666666665554
No 50
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.34 E-value=4.5e-11 Score=132.82 Aligned_cols=370 Identities=11% Similarity=0.016 Sum_probs=184.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCCh---HHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhc
Q 047992 230 ISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQC---DVAMEMVKRMESLGITPDVFTWTCMISGFAQN 306 (868)
Q Consensus 230 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 306 (868)
...+.+.|++++|+++|++..+.| +...+..|...|...|+. ++|.+.|++..+. +...+..+...+...
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 334455566666666666665544 223333444444455555 5666666665543 444555555544444
Q ss_pred C-----ChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhH---HHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCC-
Q 047992 307 G-----RTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKAL---AMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCE- 377 (868)
Q Consensus 307 g-----~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~---~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g- 377 (868)
+ ++++|+..|++....|.. ..+..+...+...+.. ..+.+.+......| +......|..+|...+
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 3 556666666666554321 1333344343332222 12333333333333 3445556666666665
Q ss_pred ---CHHHHHHHHHhcCCCCeehHHHHHHHHHhcC---ChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhc----CCHHH
Q 047992 378 ---ELEAAERVFDMIKDKDVYSWNSMIAGYCQAG---YCGKAYELFIKMQESDVPPNVITWNVLISGYIQN----GNEDE 447 (868)
Q Consensus 378 ---~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~----g~~~~ 447 (868)
..+.+..+++.....++.++..+...|...| +.++|++.|++..+.| .++...+..|..+|... +++++
T Consensus 157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 4555666666666666667777777777777 7777777777777776 33333335555666443 57777
Q ss_pred HHHHHHhcccCCCCCCCeeehhhhHHH-H--HhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHH
Q 047992 448 AVDLFQRMGKNDKVKRNTASWNSLIAG-Y--QQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHG 524 (868)
Q Consensus 448 A~~~f~~m~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~ 524 (868)
|..+|++.. +.+...+..|... | ...+++++|+..|++..+.|
T Consensus 236 A~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g----------------------------- 281 (452)
T 3e4b_A 236 AQALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD----------------------------- 281 (452)
T ss_dssp HHHHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-----------------------------
T ss_pred HHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-----------------------------
Confidence 777777764 2344455555554 3 34566666666666554433
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcC-----CHHHHHHHHhcCCCCCceecHHHHHHHHh----cCChHHHHHHHHHHHHC
Q 047992 525 CVLRRSLESSLPVMNSLIDTYAKSG-----NIVYSRTIFDGMSSKDIITWNSLICGYVL----HGFWHAALDLFDQMKSF 595 (868)
Q Consensus 525 ~~~~~~~~~~~~~~~~Li~~y~k~g-----~~~~A~~~f~~~~~~d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~ 595 (868)
++.....|..+|. .| +.++|.+.|++..+.++.++..+...|.. ..+.++|+..|++..+.
T Consensus 282 ---------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 282 ---------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp ---------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred ---------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 3444455555665 34 67777777776554455566666555554 23667777777777665
Q ss_pred CCCCCHHHHHHHHHHhhc----cCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHh
Q 047992 596 GLKPNRGTFLSIILAHSL----AGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIED 662 (868)
Q Consensus 596 g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~ 662 (868)
|. |+.. ..+...+.. ..+.++|..+|+...+ .|.......... +......+.+++|..+.++
T Consensus 352 g~-~~A~--~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~-~g~~~a~~~l~~-l~~~~~~~~~~~a~~~~~~ 417 (452)
T 3e4b_A 352 GQ-NSAD--FAIAQLFSQGKGTKPDPLNAYVFSQLAKA-QDTPEANDLATQ-LEAPLTPAQRAEGQRLVQQ 417 (452)
T ss_dssp TC-TTHH--HHHHHHHHSCTTBCCCHHHHHHHHHHHHT-TCCHHHHHHHHH-HHTTCCHHHHHHHHHHHHH
T ss_pred Ch-HHHH--HHHHHHHHhCCCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 43 3332 222223322 3466777777776654 232222212221 2222234456666666554
No 51
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.34 E-value=1.1e-11 Score=122.77 Aligned_cols=195 Identities=16% Similarity=0.047 Sum_probs=104.7
Q ss_pred CCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHH
Q 047992 426 PPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILS 505 (868)
Q Consensus 426 ~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 505 (868)
+++...+..+...+.+.|++++|...|++..+.. |.+...|..+...+.+.|++++|+..|++..+. .|+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~------ 71 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPR------ 71 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC------
Confidence 3455556666666666777777777777665543 445566666666666666666666666665532 232
Q ss_pred HHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc-----------CCHHHHHHHHhcCC---CCCceecHH
Q 047992 506 VLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKS-----------GNIVYSRTIFDGMS---SKDIITWNS 571 (868)
Q Consensus 506 ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~-----------g~~~~A~~~f~~~~---~~d~~~~~~ 571 (868)
+...+..+...|.+. |++++|...|++.. +.+...|..
T Consensus 72 ----------------------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~ 123 (217)
T 2pl2_A 72 ----------------------------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQ 123 (217)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ----------------------------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 333444444445444 66666666665442 334555666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcC
Q 047992 572 LICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSG 651 (868)
Q Consensus 572 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g 651 (868)
+...|...|++++|++.|++.++.. .+...+..+..++...|++++|+..|+...+.. +.+...+..+..++.+.|
T Consensus 124 lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g 199 (217)
T 2pl2_A 124 RGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKG 199 (217)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC--
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcc
Confidence 6666666666666666666666644 445555556666666666666666666655521 112344555566666666
Q ss_pred ChHHHHHHHHh
Q 047992 652 KLEEAMEFIED 662 (868)
Q Consensus 652 ~~~eA~~~i~~ 662 (868)
++++|.+.+++
T Consensus 200 ~~~~A~~~~~~ 210 (217)
T 2pl2_A 200 KAEEAARAAAL 210 (217)
T ss_dssp -----------
T ss_pred CHHHHHHHHHH
Confidence 66666666554
No 52
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.33 E-value=5.1e-11 Score=132.36 Aligned_cols=342 Identities=13% Similarity=-0.000 Sum_probs=178.3
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCC-CCeehHHHHHHHHHhcCCh---hHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcC-
Q 047992 369 LINMYSKCEELEAAERVFDMIKD-KDVYSWNSMIAGYCQAGYC---GKAYELFIKMQESDVPPNVITWNVLISGYIQNG- 443 (868)
Q Consensus 369 li~~y~~~g~~~~A~~vf~~~~~-~~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g- 443 (868)
+...+.+.|++++|.+.|+...+ .+..++..+...|...|+. ++|+..|++..+. +...+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 55566677788888887776654 3455566666666666766 7777777777643 4455555655444443
Q ss_pred ----CHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChh---HHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhch
Q 047992 444 ----NEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKN---NALGVFRKMQSSCFYPNCVTILSVLPACAYLVAS 516 (868)
Q Consensus 444 ----~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 516 (868)
++++|...|++..+.+ +...+..|...|...+..+ ++.+.+......|.. .....+-..+...+.+
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANG----EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYP---EAGLAQVLLYRTQGTY 157 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTT----CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCT---THHHHHHHHHHHHTCG
T ss_pred CCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCH---HHHHHHHHHHHcCCCc
Confidence 6677777777776543 3336666766666655433 344444444433331 1222222333333333
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC---CHHHHHHHHhcCCC---CCceecHHHHHHHHhc----CChHHHH
Q 047992 517 NKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSG---NIVYSRTIFDGMSS---KDIITWNSLICGYVLH----GFWHAAL 586 (868)
Q Consensus 517 ~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g---~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~----g~~~~A~ 586 (868)
+........+.+.-...++..+..|..+|.+.| +.++|.+.|++... ++...+..+...|... ++.++|+
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 333222222223223334446777777777777 77777777775542 2223335555555433 5677777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH-h--hccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcC-----ChHHHHH
Q 047992 587 DLFDQMKSFGLKPNRGTFLSIILA-H--SLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSG-----KLEEAME 658 (868)
Q Consensus 587 ~l~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g-----~~~eA~~ 658 (868)
+.|++.. .| +...+..+... + ...|+.++|..+|+...+. | +...+..+..+|. .| ++++|.+
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 7777765 21 22333333333 2 3467777777777776542 2 4445555555555 44 7777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhh----cCCChhHHHHHHHHH
Q 047992 659 FIEDMPIEPDSSIWEALLTACRI----HGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAI----CGKPEDALKVRKLER 730 (868)
Q Consensus 659 ~i~~~~~~p~~~~w~~ll~a~~~----~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~ 730 (868)
++++.- ..++..+..|...+.. .+|.+.|...++++.+ +.++.++..|+.+|.. ..+.++|....+.-.
T Consensus 309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 777776 4455565555554443 2377777777777766 3456677777777764 345666666666555
Q ss_pred hcC
Q 047992 731 ENT 733 (868)
Q Consensus 731 ~~~ 733 (868)
+.|
T Consensus 386 ~~g 388 (452)
T 3e4b_A 386 AQD 388 (452)
T ss_dssp TTC
T ss_pred HCC
Confidence 444
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.33 E-value=8.1e-12 Score=134.43 Aligned_cols=190 Identities=9% Similarity=0.041 Sum_probs=161.6
Q ss_pred ChhHHHHHHHHHHhcCC-HHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 047992 534 SLPVMNSLIDTYAKSGN-IVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSII 608 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~-~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll 608 (868)
+..+++.+...|.+.|+ +++|...|++.. +++...|+.+...|...|++++|+..|+++++ +.|+. ..|..+.
T Consensus 130 ~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg 207 (382)
T 2h6f_A 130 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQ 207 (382)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCccCHHHHHHHH
Confidence 56778888999999996 999999999765 56788999999999999999999999999999 67755 7888888
Q ss_pred HHhhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhh-cCChHHH-----HHHHHhC-CCCCC-HHHHHHHHHHH
Q 047992 609 LAHSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGR-SGKLEEA-----MEFIEDM-PIEPD-SSIWEALLTAC 679 (868)
Q Consensus 609 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r-~g~~~eA-----~~~i~~~-~~~p~-~~~w~~ll~a~ 679 (868)
.++.+.|++++|+.+|+.+.+. .| +...|..+..+|.+ .|..++| ++.+++. ...|+ ..+|..+...+
T Consensus 208 ~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll 284 (382)
T 2h6f_A 208 WVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL 284 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 9999999999999999999873 34 45678888888988 6776888 4777766 44554 56999999988
Q ss_pred HhcC--CHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC---------CChhHHHHHHHH
Q 047992 680 RIHG--NIDLAVLAIERLFDLEPGDVLIQRLILQIYAICG---------KPEDALKVRKLE 729 (868)
Q Consensus 680 ~~~~--~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g---------~~~~a~~~~~~m 729 (868)
...| +++.|...++++ +.+|+++.++..|+.+|...| ..++|.++.+.+
T Consensus 285 ~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 285 QDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp TTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 8877 689999999998 999999999999999999985 247888887766
No 54
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.32 E-value=1.4e-09 Score=124.82 Aligned_cols=218 Identities=10% Similarity=-0.004 Sum_probs=159.7
Q ss_pred HHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHH-HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 047992 483 NALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVK-EIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGM 561 (868)
Q Consensus 483 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~ 561 (868)
.+..+|++.... ..-+...|.....-+...++.+.+. +++...++. .+.+..++-.++..+.+.|+++.|+++|+++
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345566665542 2224555555555566667777775 888888763 4456777888899999999999999999876
Q ss_pred CC-------------CC------------ceecHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhhc-c
Q 047992 562 SS-------------KD------------IITWNSLICGYVLHGFWHAALDLFDQMKSF-GLKPNRGTFLSIILAHSL-A 614 (868)
Q Consensus 562 ~~-------------~d------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~-~ 614 (868)
.. |+ ...|...+....+.|..+.|..+|.+.++. +.. ....|......-.+ .
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-TPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-CTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHhC
Confidence 53 21 236888888888899999999999999885 211 22333322222223 4
Q ss_pred CChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHH
Q 047992 615 GMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP----DSSIWEALLTACRIHGNIDLAV 689 (868)
Q Consensus 615 g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p----~~~~w~~ll~a~~~~~~~~~a~ 689 (868)
++++.|+++|+...+.++..| ..+...++.+...|+.+.|..+|++. ...| ...+|...+.--..+|+.+.+.
T Consensus 484 ~d~e~Ar~ife~~Lk~~p~~~--~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYFATDG--EYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp SCCHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCch--HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 569999999999998765444 34678889999999999999999987 2223 2349999999999999999999
Q ss_pred HHHHHHhccCCCCchh
Q 047992 690 LAIERLFDLEPGDVLI 705 (868)
Q Consensus 690 ~~~~~~~~l~p~~~~~ 705 (868)
.+.+++.+..|+++..
T Consensus 562 ~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 562 TLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHHHHHSTTCCHH
T ss_pred HHHHHHHHhCCCCcHH
Confidence 9999999999987643
No 55
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.31 E-value=3.7e-11 Score=115.52 Aligned_cols=158 Identities=15% Similarity=0.119 Sum_probs=96.0
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHh
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDL 646 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~ 646 (868)
.|..+...|...|++++|++.|++.++ +.|+. ..+..+..++.+.|+.++|...+........ .....+..+...
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~ 82 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT--TSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--hhHHHHHHHHHH
Confidence 444555555555555555555555555 34433 3444455555555555555555555544211 123334455556
Q ss_pred hhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHH
Q 047992 647 YGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALK 724 (868)
Q Consensus 647 l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 724 (868)
+...+++++|.+.+++. ...| +..+|..+...+...|+++.|...++++++++|+++.+|..++.+|...|++++|.+
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence 66666666666666655 2233 345677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHH
Q 047992 725 VRKLE 729 (868)
Q Consensus 725 ~~~~m 729 (868)
..+..
T Consensus 163 ~~~~a 167 (184)
T 3vtx_A 163 YFKKA 167 (184)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66544
No 56
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.30 E-value=7e-12 Score=140.26 Aligned_cols=190 Identities=9% Similarity=0.007 Sum_probs=168.3
Q ss_pred CChhHHHHHHHHHHhcCCH-HHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047992 533 SSLPVMNSLIDTYAKSGNI-VYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSII 608 (868)
Q Consensus 533 ~~~~~~~~Li~~y~k~g~~-~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 608 (868)
.+...+..+...|...|++ ++|.+.|++.. +.+...|..+...|...|++++|++.|++..+ +.|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHH
Confidence 4677888899999999999 99999998764 45678999999999999999999999999998 678888888888
Q ss_pred HHhhcc---------CChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhc--------CChHHHHHHHHhC-CCCC---
Q 047992 609 LAHSLA---------GMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRS--------GKLEEAMEFIEDM-PIEP--- 667 (868)
Q Consensus 609 ~a~~~~---------g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~--------g~~~eA~~~i~~~-~~~p--- 667 (868)
.++... |++++|..+|+...+.. ..+...|..+..+|.+. |++++|.+.+++. ...|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 899999 99999999999988742 22366788899999888 9999999999988 4455
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHH
Q 047992 668 -DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVR 726 (868)
Q Consensus 668 -~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 726 (868)
+...|..+..++...|+++.|...++++++++|+++.++..++.+|...|++++|.+..
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67799999999999999999999999999999999999999999999999999998743
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.30 E-value=3.2e-12 Score=140.19 Aligned_cols=294 Identities=12% Similarity=0.097 Sum_probs=201.7
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCe-----eehhhHHHHHHhcCCHHHHHHHHHhcccC----CCCCCCe
Q 047992 395 YSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNV-----ITWNVLISGYIQNGNEDEAVDLFQRMGKN----DKVKRNT 465 (868)
Q Consensus 395 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~li~~~~~~g~~~~A~~~f~~m~~~----~~~~~~~ 465 (868)
..+......+...|++++|+..|++..+.+ |+. ..+..+...|...|++++|...|++.... +..+...
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 345566777888888888888888888763 332 45667777888888888888888876432 1111224
Q ss_pred eehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCC-CChhHHHHHHHH
Q 047992 466 ASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLE-SSLPVMNSLIDT 544 (868)
Q Consensus 466 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~Li~~ 544 (868)
.++..+...|...|++++|+..+++..... |. .+-. ....++..+...
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~-----------------------------~~~~~~~~~~~~~l~~~ 136 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDIS--RE-----------------------------LNDKVGEARALYNLGNV 136 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH-----------------------------HTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--Hh-----------------------------cccccchHHHHHHHHHH
Confidence 456667777777777777777777665320 00 0000 012345566667
Q ss_pred HHhcCC--------------------HHHHHHHHhcCCC-----C----CceecHHHHHHHHhcCChHHHHHHHHHHHHC
Q 047992 545 YAKSGN--------------------IVYSRTIFDGMSS-----K----DIITWNSLICGYVLHGFWHAALDLFDQMKSF 595 (868)
Q Consensus 545 y~k~g~--------------------~~~A~~~f~~~~~-----~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 595 (868)
|...|+ +++|...|++... . ...+|+.+...|...|++++|++.|++..+.
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 777777 7777666664321 1 1346777888888889999999888887652
Q ss_pred C-CCCC----HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC----hhHHHHHHHhhhhcCChHHHHHHHHhC---
Q 047992 596 G-LKPN----RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM----IEHYSAMIDLYGRSGKLEEAMEFIEDM--- 663 (868)
Q Consensus 596 g-~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lvd~l~r~g~~~eA~~~i~~~--- 663 (868)
. -.++ ..++..+...+...|+.++|..+|+...+...-.++ ...+..+..++.+.|++++|.+.+++.
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 1 0122 136677777888899999999999877653322222 456778888999999999999998876
Q ss_pred -CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC------CCchhHHHHHHHHhhcCCChh
Q 047992 664 -PIEPD----SSIWEALLTACRIHGNIDLAVLAIERLFDLEP------GDVLIQRLILQIYAICGKPED 721 (868)
Q Consensus 664 -~~~p~----~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p------~~~~~~~~l~~~y~~~g~~~~ 721 (868)
+..++ ..+|..+...+...|+++.|...+++++++.+ ....++..|+.+|...|+...
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 11222 44788888889999999999999999998743 346678889999999987743
No 58
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.29 E-value=6.1e-10 Score=114.68 Aligned_cols=223 Identities=12% Similarity=-0.065 Sum_probs=158.5
Q ss_pred CeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 047992 464 NTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLID 543 (868)
Q Consensus 464 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~ 543 (868)
+..++..+...|...|++++|+..|++..+. .+...+..|..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--------------------------------------~~~~a~~~lg~ 46 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--------------------------------------KENSGCFNLGV 46 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------------------------------------TCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--------------------------------------CCHHHHHHHHH
Confidence 4556666677777777777777777776541 12334455666
Q ss_pred HHHh----cCCHHHHHHHHhcCCC-CCceecHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc-
Q 047992 544 TYAK----SGNIVYSRTIFDGMSS-KDIITWNSLICGYVL----HGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSL- 613 (868)
Q Consensus 544 ~y~k----~g~~~~A~~~f~~~~~-~d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~- 613 (868)
+|.. .|++++|...|++... .+..+|..+...|.. .|+.++|++.|++..+.+ +...+..+...+..
T Consensus 47 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 47 LYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred HHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence 6666 7777777777776542 356667777777777 778888888888777754 55666666666776
Q ss_pred ---cCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 047992 614 ---AGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGR----SGKLEEAMEFIEDMPIEPDSSIWEALLTACRI----H 682 (868)
Q Consensus 614 ---~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r----~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~----~ 682 (868)
.|+.++|..+|+...+. + +...+..+..+|.+ .|++++|.+.+++.--..+...+..|...+.. .
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 78888888888777662 2 34556666777776 78888888888876222455677777777777 8
Q ss_pred CCHHHHHHHHHHHhccCCCCchhHHHHHHHHhh----cCCChhHHHHHHHHHhcC
Q 047992 683 GNIDLAVLAIERLFDLEPGDVLIQRLILQIYAI----CGKPEDALKVRKLERENT 733 (868)
Q Consensus 683 ~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~~ 733 (868)
++++.|...++++++.+| +.++..|+.+|.. .|++++|.+..+...+.|
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 888888888888888876 6778888888888 888888888777665554
No 59
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.28 E-value=1.9e-10 Score=118.46 Aligned_cols=228 Identities=11% Similarity=-0.034 Sum_probs=179.2
Q ss_pred CeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHh----cCChhHHHHHHHHhhcCCCCCCHHhH
Q 047992 428 NVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQ----LGQKNNALGVFRKMQSSCFYPNCVTI 503 (868)
Q Consensus 428 ~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 503 (868)
+..++..+...|...|++++|...|++..+ +.+...+..+...|.. .+++++|+..|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--------
Confidence 455677788889999999999999999987 3455778888888888 999999999988876432
Q ss_pred HHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhcCCC-CCceecHHHHHHHHh
Q 047992 504 LSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAK----SGNIVYSRTIFDGMSS-KDIITWNSLICGYVL 578 (868)
Q Consensus 504 ~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~~~~-~d~~~~~~li~~~~~ 578 (868)
++..+..|..+|.. .|++++|.+.|++... .+..++..+...|..
T Consensus 73 ------------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 122 (273)
T 1ouv_A 73 ------------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHD 122 (273)
T ss_dssp ------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHc
Confidence 34445566777777 8888888888876543 466678888888888
Q ss_pred ----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----cCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhh-
Q 047992 579 ----HGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSL----AGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGR- 649 (868)
Q Consensus 579 ----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r- 649 (868)
.|+.++|++.|++..+.+ +...+..+...+.. .++.++|..+|+...+. .+...+..+..+|.+
T Consensus 123 ~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g 195 (273)
T 1ouv_A 123 GKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHG 195 (273)
T ss_dssp CSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHT
T ss_pred CCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcC
Confidence 889999999999988865 44556666666766 88999999999987763 235667778888888
Q ss_pred ---cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCch
Q 047992 650 ---SGKLEEAMEFIEDMPIEPDSSIWEALLTACRI----HGNIDLAVLAIERLFDLEPGDVL 704 (868)
Q Consensus 650 ---~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~----~~~~~~a~~~~~~~~~l~p~~~~ 704 (868)
.|++++|.+.+++.--..+...+..|...+.. .+|.+.|...++++++++|+++.
T Consensus 196 ~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 196 EGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp CSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred CCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999887222336677888888888 89999999999999999997543
No 60
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.28 E-value=1.9e-10 Score=118.47 Aligned_cols=237 Identities=12% Similarity=-0.040 Sum_probs=155.7
Q ss_pred CChHHHHHHHhhcCCC-------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHH
Q 047992 206 GKLIWARRFFESMDEK-------DGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAM 278 (868)
Q Consensus 206 g~~~~A~~~f~~~~~~-------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 278 (868)
|++++|...|+++... +...|..+...+...|++++|++.|++..... +.+..++..+...|...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 3444555555443321 34456677777777777777777777777653 235667777777888888888888
Q ss_pred HHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhC
Q 047992 279 EMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMG 358 (868)
Q Consensus 279 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 358 (868)
+.|++..+..+. +..+|..+...|.+.|++++|+..|+++... .|+.......+..+...|+++.+...+.......
T Consensus 98 ~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 888877776443 5677888888888888888888888888653 4555555555555666788888888887777664
Q ss_pred CCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCC-------eehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeee
Q 047992 359 FTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKD-------VYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVIT 431 (868)
Q Consensus 359 ~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 431 (868)
+++...+ .++..+...++.++|...++.....+ ..+|..+...|.+.|++++|...|++..+.. |+.
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~-- 248 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN-- 248 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--
Confidence 2333333 46777777888888888888776642 3556677777777777777777777777543 221
Q ss_pred hhhHHHHHHhcCCHHHHHHHH
Q 047992 432 WNVLISGYIQNGNEDEAVDLF 452 (868)
Q Consensus 432 ~~~li~~~~~~g~~~~A~~~f 452 (868)
+.....++...|++++|++.+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 333344555666666665554
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.27 E-value=5.5e-11 Score=126.17 Aligned_cols=196 Identities=16% Similarity=0.085 Sum_probs=140.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----ceecHHHHHHHHhcCC--------------------hHHHH
Q 047992 536 PVMNSLIDTYAKSGNIVYSRTIFDGMSS-----KD----IITWNSLICGYVLHGF--------------------WHAAL 586 (868)
Q Consensus 536 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~d----~~~~~~li~~~~~~g~--------------------~~~A~ 586 (868)
.++..+...|...|++++|...|++... ++ ..++..+...|...|+ +++|+
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 3455667777777777777777765431 12 2366777777778888 88888
Q ss_pred HHHHHHHHC----CCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC----hhHHHHHHHhhhhcCChHHHH
Q 047992 587 DLFDQMKSF----GLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM----IEHYSAMIDLYGRSGKLEEAM 657 (868)
Q Consensus 587 ~l~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lvd~l~r~g~~~eA~ 657 (868)
+.+++.... +-.|.. ..+..+...+...|+.++|..+|+...+...-.++ ...+..+..++.+.|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 888776541 112222 35666677788889999999888877653322222 236777888889999999999
Q ss_pred HHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------chhHHHHHHHHhhcCCChhHH
Q 047992 658 EFIEDM----PIEPD----SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGD------VLIQRLILQIYAICGKPEDAL 723 (868)
Q Consensus 658 ~~i~~~----~~~p~----~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~------~~~~~~l~~~y~~~g~~~~a~ 723 (868)
+.+++. +..++ ..++..+...+...|+++.|...+++++++.|.. ...+..++.+|...|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 888876 11222 3477778888899999999999999999876643 347888999999999999999
Q ss_pred HHHHHHHh
Q 047992 724 KVRKLERE 731 (868)
Q Consensus 724 ~~~~~m~~ 731 (868)
+..+...+
T Consensus 324 ~~~~~a~~ 331 (338)
T 3ro2_A 324 HFAEKHLE 331 (338)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98776644
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.27 E-value=2.8e-11 Score=116.37 Aligned_cols=167 Identities=14% Similarity=0.129 Sum_probs=143.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIIL 609 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~ 609 (868)
+..+|..|...|.+.|++++|.+.|++.. +.+..+|..+...|...|++++|++.+++... ..|+. ..+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHHH
Confidence 56789999999999999999999999764 56788999999999999999999999999988 45554 56666777
Q ss_pred HhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 047992 610 AHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDL 687 (868)
Q Consensus 610 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~ 687 (868)
.+...++.+++...+....+.. +.+...+..+..+|.+.|++++|++.+++. ...| +..+|..+..++...|+++.
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 8889999999999999887742 234567888999999999999999999987 4445 45689999999999999999
Q ss_pred HHHHHHHHhccCCCCch
Q 047992 688 AVLAIERLFDLEPGDVL 704 (868)
Q Consensus 688 a~~~~~~~~~l~p~~~~ 704 (868)
|...++++++++|+++.
T Consensus 160 A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHhCCccCHH
Confidence 99999999999998643
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.26 E-value=2.6e-11 Score=132.85 Aligned_cols=268 Identities=15% Similarity=0.078 Sum_probs=196.0
Q ss_pred eehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCC----eeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHH
Q 047992 430 ITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRN----TASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILS 505 (868)
Q Consensus 430 ~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 505 (868)
..+......+...|++++|...|++..+.. +.+ ...|..+...|...|++++|...+++....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------- 76 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL----------- 76 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----------
Confidence 334455666777788888888887776643 222 245666677777777777777777765421
Q ss_pred HHHHHhchhchHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----ceecHHHHHH
Q 047992 506 VLPACAYLVASNKVKEIHGCVLRRSLES-SLPVMNSLIDTYAKSGNIVYSRTIFDGMSS-----KD----IITWNSLICG 575 (868)
Q Consensus 506 ll~a~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~d----~~~~~~li~~ 575 (868)
..+.+..+ ...++..+...|...|++++|...|++... ++ ..+|+.+...
T Consensus 77 --------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 136 (406)
T 3sf4_A 77 --------------------ARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNV 136 (406)
T ss_dssp --------------------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --------------------HHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 00001111 234567788899999999999998886542 22 3478889999
Q ss_pred HHhcCC--------------------hHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhh
Q 047992 576 YVLHGF--------------------WHAALDLFDQMKSF----GLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITEC 630 (868)
Q Consensus 576 ~~~~g~--------------------~~~A~~l~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 630 (868)
|...|+ +++|++.|++.... +-.|.. .++..+...+...|++++|..+|+...+.
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999 99999999887652 222322 46677778899999999999999988764
Q ss_pred cCCCCC----hhHHHHHHHhhhhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 047992 631 YQIIPM----IEHYSAMIDLYGRSGKLEEAMEFIEDM----PIEPD----SSIWEALLTACRIHGNIDLAVLAIERLFDL 698 (868)
Q Consensus 631 ~~~~p~----~~~y~~lvd~l~r~g~~~eA~~~i~~~----~~~p~----~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l 698 (868)
..-.++ ...|..+..++.+.|++++|.+.+++. +..++ ..++..+...+...|+++.|...+++++++
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 333333 236888899999999999999999876 21222 447888888999999999999999999998
Q ss_pred CCCC------chhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 699 EPGD------VLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 699 ~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
.|.. +..+..++.+|...|++++|.+..+...
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6654 5688899999999999999999766543
No 64
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.26 E-value=3e-11 Score=140.57 Aligned_cols=159 Identities=16% Similarity=0.108 Sum_probs=120.3
Q ss_pred ceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC-hhHHHHH
Q 047992 566 IITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM-IEHYSAM 643 (868)
Q Consensus 566 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~l 643 (868)
..+|+.+...|.+.|++++|++.|++.++ +.|+. ..+..+..++...|+.++|+..|+...+ +.|+ .+.|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 34566666666666666666666666666 45653 5566666666666777777776666655 2343 4567777
Q ss_pred HHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChh
Q 047992 644 IDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPED 721 (868)
Q Consensus 644 vd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 721 (868)
..+|.+.|++++|++.+++. .+.|+ ...|..|..++...|++++|+..++++++++|+++.+|..|+.+|...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 77888888888888888776 44554 55899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 047992 722 ALKVRKLE 729 (868)
Q Consensus 722 a~~~~~~m 729 (868)
|.+..+..
T Consensus 164 A~~~~~ka 171 (723)
T 4gyw_A 164 YDERMKKL 171 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98865544
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.25 E-value=2.1e-11 Score=134.04 Aligned_cols=268 Identities=13% Similarity=0.028 Sum_probs=184.1
Q ss_pred ehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCe----eehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHH
Q 047992 431 TWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNT----ASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSV 506 (868)
Q Consensus 431 t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 506 (868)
.+..+...+...|++++|...|+++.+.. +.+. ..|..+...|...|++++|+..+++.....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------- 116 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA----------- 116 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----------
Confidence 34455667778888888888888876653 2222 356777777888888888888877764310
Q ss_pred HHHHhchhchHHHHHHHHHHHHhCCC-CChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---------CCceecHHHHHHH
Q 047992 507 LPACAYLVASNKVKEIHGCVLRRSLE-SSLPVMNSLIDTYAKSGNIVYSRTIFDGMSS---------KDIITWNSLICGY 576 (868)
Q Consensus 507 l~a~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---------~d~~~~~~li~~~ 576 (868)
.+.+-. ....++..+...|...|++++|...|++... ....+|+.+...|
T Consensus 117 --------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 176 (411)
T 4a1s_A 117 --------------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVY 176 (411)
T ss_dssp --------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred --------------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 000001 1234566677777788888888777775432 1234677777788
Q ss_pred HhcCC-----------------hHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCC
Q 047992 577 VLHGF-----------------WHAALDLFDQMKSF----GLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQII 634 (868)
Q Consensus 577 ~~~g~-----------------~~~A~~l~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 634 (868)
...|+ +++|++.|++..+. +-.|.. .++..+...+...|++++|..+|+...+...-.
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 88888 88888888776541 112222 466667777888888888888888776543222
Q ss_pred CC----hhHHHHHHHhhhhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 047992 635 PM----IEHYSAMIDLYGRSGKLEEAMEFIEDM----PIEPD----SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGD 702 (868)
Q Consensus 635 p~----~~~y~~lvd~l~r~g~~~eA~~~i~~~----~~~p~----~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 702 (868)
++ ...+..+..+|...|++++|.+.+++. +-..+ ..+|..+...+...|+++.|...+++++++.|+.
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 22 226777888888999999998888776 11112 3477788888889999999999999998876543
Q ss_pred ------chhHHHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 703 ------VLIQRLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 703 ------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
...+..|+.+|...|++++|.+..+...+
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34788899999999999999987665543
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.25 E-value=5.9e-10 Score=117.12 Aligned_cols=168 Identities=12% Similarity=0.078 Sum_probs=135.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCce-ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMSS---KDII-TWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN-RGTFLSII 608 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~d~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 608 (868)
+..++..++..+.+.|++++|.++|++... .+.. .|..++..+.+.|+.++|.++|++..+. .|+ ...|....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a 175 (308)
T 2ond_A 98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAA 175 (308)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHH
Confidence 556788888999999999999999997643 3444 7999999999999999999999999984 443 34454443
Q ss_pred HHhh-ccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC----CCCC--CHHHHHHHHHHHHh
Q 047992 609 LAHS-LAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM----PIEP--DSSIWEALLTACRI 681 (868)
Q Consensus 609 ~a~~-~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~----~~~p--~~~~w~~ll~a~~~ 681 (868)
.... ..|+.++|+.+|+...+..+- +...|..+++.+.+.|++++|..++++. ++.| ...+|..++.....
T Consensus 176 ~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~ 253 (308)
T 2ond_A 176 LMEYYCSKDKSVAFKIFELGLKKYGD--IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 253 (308)
T ss_dssp HHHHHTSCCHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 3332 379999999999998875443 4567889999999999999999999987 2455 35699999999999
Q ss_pred cCCHHHHHHHHHHHhccCCCCchh
Q 047992 682 HGNIDLAVLAIERLFDLEPGDVLI 705 (868)
Q Consensus 682 ~~~~~~a~~~~~~~~~l~p~~~~~ 705 (868)
+|+.+.|..++++++++.|+++..
T Consensus 254 ~g~~~~a~~~~~~a~~~~p~~~~~ 277 (308)
T 2ond_A 254 IGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp HSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred cCCHHHHHHHHHHHHHHccccccc
Confidence 999999999999999999986643
No 67
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.23 E-value=1.9e-10 Score=114.91 Aligned_cols=180 Identities=13% Similarity=0.011 Sum_probs=113.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---C-CCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMS---S-KDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSII 608 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~-~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll 608 (868)
|+..+..+...|.+.|++++|...|++.. + ++...|..+...|...|++++|++.|++..+ ..|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 34455555666666666666666666432 2 4555555566666666666666666666665 45544 4455555
Q ss_pred HHhhccCChHHHHHHHHHhhhhcCCCCCh-----hHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC--H-HHHHHHHHHH
Q 047992 609 LAHSLAGMVDLGKKVFCSITECYQIIPMI-----EHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD--S-SIWEALLTAC 679 (868)
Q Consensus 609 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~--~-~~w~~ll~a~ 679 (868)
.++...|+.++|...|+...+..+-.|.. ..|..+..++.+.|++++|++.++++ ...|+ . ..|..+...+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 56666666666666666665533222211 34555666666666666666666665 44554 2 3555555555
Q ss_pred HhcCCH---------------------------HHHHHHHHHHhccCCCCchhHHHHHHHHhh
Q 047992 680 RIHGNI---------------------------DLAVLAIERLFDLEPGDVLIQRLILQIYAI 715 (868)
Q Consensus 680 ~~~~~~---------------------------~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 715 (868)
...|+. +.|...++++++++|+++.+...|+.+...
T Consensus 164 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 164 YNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 555555 999999999999999999999988887654
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.22 E-value=3.7e-11 Score=127.53 Aligned_cols=270 Identities=13% Similarity=0.098 Sum_probs=168.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCCCCCC-----eeehhhHHHHHHhcCCHHHHHHHHHhcccC----CCCCCCeeehh
Q 047992 399 SMIAGYCQAGYCGKAYELFIKMQESDVPPN-----VITWNVLISGYIQNGNEDEAVDLFQRMGKN----DKVKRNTASWN 469 (868)
Q Consensus 399 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~li~~~~~~g~~~~A~~~f~~m~~~----~~~~~~~~~~~ 469 (868)
.....+...|++++|+..|++..+.. |+ ...+..+...|...|++++|...|++.... +..+....++.
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 34455666777777777777776653 33 245566677777778888887777765332 11122244566
Q ss_pred hhHHHHHhcCChhHHHHHHHHhhcCCC-CCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 047992 470 SLIAGYQQLGQKNNALGVFRKMQSSCF-YPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKS 548 (868)
Q Consensus 470 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~ 548 (868)
.+...|...|++++|...+++...... .++... ...++..+...|...
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------------------------~~~~~~~l~~~~~~~ 136 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG-------------------------------EARALYNLGNVYHAK 136 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH-------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchH-------------------------------HHHHHHHHHHHHHHc
Confidence 777777788888888887777543100 011000 112344455555555
Q ss_pred CC--------------------HHHHHHHHhcCCC-----C----CceecHHHHHHHHhcCChHHHHHHHHHHHHCCC-C
Q 047992 549 GN--------------------IVYSRTIFDGMSS-----K----DIITWNSLICGYVLHGFWHAALDLFDQMKSFGL-K 598 (868)
Q Consensus 549 g~--------------------~~~A~~~f~~~~~-----~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~ 598 (868)
|+ +++|.+.|++... + ....+..+...|...|++++|++.|++..+... .
T Consensus 137 ~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 137 GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 55 5555555554321 1 123566677777778888888888877764210 0
Q ss_pred CC----HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC----hhHHHHHHHhhhhcCChHHHHHHHHhC----CCC
Q 047992 599 PN----RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM----IEHYSAMIDLYGRSGKLEEAMEFIEDM----PIE 666 (868)
Q Consensus 599 p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lvd~l~r~g~~~eA~~~i~~~----~~~ 666 (868)
++ ..++..+...+...|+.++|..+|+...+...-.++ ...+..+..++.+.|++++|.+.++++ +..
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 11 125666667778888888888888876553222222 446777888888999999998888776 111
Q ss_pred CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 047992 667 PD----SSIWEALLTACRIHGNIDLAVLAIERLFDLEPG 701 (868)
Q Consensus 667 p~----~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 701 (868)
++ ..+|..+...+...|+++.|...+++++++.|+
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 22 337778888899999999999999999998875
No 69
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.21 E-value=1.2e-08 Score=117.08 Aligned_cols=147 Identities=11% Similarity=0.064 Sum_probs=79.1
Q ss_pred hhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCC---hHHHHHH
Q 047992 138 WREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGK---LIWARRF 214 (868)
Q Consensus 138 ~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---~~~A~~~ 214 (868)
..+.+..|++.+... +-|..+|..++..+...+.++.++.+++.+++. ++.....|..-+..-.+.|+ .+.+..+
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 444454555544432 345566777777776666777777777777665 34455566666666666666 6777777
Q ss_pred HhhcCC-----CChhhHHHHHHHHHhcCCh--------hHHHHHHHHHHH-cCC-ccC-hhhHHHHHHHHHh--------
Q 047992 215 FESMDE-----KDGVAWNSMISGYFQIGEN--------DEAHRLFDKMCR-EEI-KLG-VVTFNILIRSYNQ-------- 270 (868)
Q Consensus 215 f~~~~~-----~d~~~~~~li~~~~~~g~~--------~~A~~l~~~m~~-~g~-~p~-~~~~~~li~~~~~-------- 270 (868)
|++... +++..|...+.-..+.++. +...++|+.... .|. .|+ ...|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 766432 4555666666555444432 223355555443 244 333 2455555544322
Q ss_pred -cCChHHHHHHHHHHHh
Q 047992 271 -LGQCDVAMEMVKRMES 286 (868)
Q Consensus 271 -~g~~~~A~~~~~~m~~ 286 (868)
.++++.+..+|+....
T Consensus 206 eq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHHHHh
Confidence 2234555566655553
No 70
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.18 E-value=7.2e-11 Score=129.79 Aligned_cols=274 Identities=14% Similarity=0.093 Sum_probs=193.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCe-----eehhhHHHHHHhcCCHHHHHHHHHhcccC----CCCCCCee
Q 047992 396 SWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNV-----ITWNVLISGYIQNGNEDEAVDLFQRMGKN----DKVKRNTA 466 (868)
Q Consensus 396 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~li~~~~~~g~~~~A~~~f~~m~~~----~~~~~~~~ 466 (868)
.+..+...+...|++++|+..|++..+.+ |+. ..+..+...|...|++++|...|++..+. +..+....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 45566778899999999999999999874 332 46788889999999999999999988543 11133446
Q ss_pred ehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 047992 467 SWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYA 546 (868)
Q Consensus 467 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~ 546 (868)
.+..+...|...|++++|+..+++...... ..++ ......++..+...|.
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---------------~~~~---------------~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLAR---------------QLGD---------------RLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------HHTC---------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---------------Hhhc---------------hHHHHHHHHHHHHHHH
Confidence 777888888899999999998888653100 0000 0012234555666666
Q ss_pred hcCC-----------------HHHHHHHHhcCCC-----C----CceecHHHHHHHHhcCChHHHHHHHHHHHHCCC-CC
Q 047992 547 KSGN-----------------IVYSRTIFDGMSS-----K----DIITWNSLICGYVLHGFWHAALDLFDQMKSFGL-KP 599 (868)
Q Consensus 547 k~g~-----------------~~~A~~~f~~~~~-----~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p 599 (868)
..|+ +++|.+.|++... . ....|..+...|...|++++|++.|++..+... .+
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 6666 6666666654321 1 234677778888888888888888888766210 01
Q ss_pred C----HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC----hhHHHHHHHhhhhcCChHHHHHHHHhC-C---CCC
Q 047992 600 N----RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM----IEHYSAMIDLYGRSGKLEEAMEFIEDM-P---IEP 667 (868)
Q Consensus 600 ~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lvd~l~r~g~~~eA~~~i~~~-~---~~p 667 (868)
+ ...+..+..++...|++++|..+|+...+...-..+ ...+..+..++.+.|++++|.+.+++. . -.+
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 1 126677777888889999999988877653321111 456778888999999999999998876 1 112
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 047992 668 D----SSIWEALLTACRIHGNIDLAVLAIERLFDLEPG 701 (868)
Q Consensus 668 ~----~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 701 (868)
+ ..++..+...+...|+.+.|...+++++++.+.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 2 337777888899999999999999999998774
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.17 E-value=1e-09 Score=115.17 Aligned_cols=211 Identities=12% Similarity=0.029 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHH-------hcCCH-------HHHHHHHhcCC----CCCceecHHHHHHHHhc
Q 047992 518 KVKEIHGCVLRRSLESSLPVMNSLIDTYA-------KSGNI-------VYSRTIFDGMS----SKDIITWNSLICGYVLH 579 (868)
Q Consensus 518 ~~~~i~~~~~~~~~~~~~~~~~~Li~~y~-------k~g~~-------~~A~~~f~~~~----~~d~~~~~~li~~~~~~ 579 (868)
.+..++..+++. .+.++.+|..++..+. +.|++ ++|..+|++.. +.+...|..++..+...
T Consensus 34 ~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 34 RVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 444455555542 2336667777777665 45885 89999999653 34566899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhh-hcCChHHH
Q 047992 580 GFWHAALDLFDQMKSFGLKPNRG--TFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYG-RSGKLEEA 656 (868)
Q Consensus 580 g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~-r~g~~~eA 656 (868)
|+.++|.++|++.++ +.|+.. .|..+...+...|.+++|+.+|+...+.. .++...|...+.+.. ..|+.++|
T Consensus 113 ~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 113 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred CCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999998 678653 78888888999999999999999988732 233445554444432 37999999
Q ss_pred HHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc---CCC-CchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 657 MEFIEDM-PIE-PDSSIWEALLTACRIHGNIDLAVLAIERLFDL---EPG-DVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 657 ~~~i~~~-~~~-p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l---~p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
.+.++++ ... .+..+|..++..+...|+++.|+.+++++++. .|+ +...|..+++.+...|++++|..+.+.+.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999987 222 35679999999999999999999999999995 564 67788999999999999999999888776
Q ss_pred hcC
Q 047992 731 ENT 733 (868)
Q Consensus 731 ~~~ 733 (868)
+..
T Consensus 269 ~~~ 271 (308)
T 2ond_A 269 TAF 271 (308)
T ss_dssp HHT
T ss_pred HHc
Confidence 554
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.17 E-value=3.5e-11 Score=126.39 Aligned_cols=166 Identities=13% Similarity=0.058 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----------CCceecHHHHHHHHhcCChHHHHHHHHHHHHC------CC
Q 047992 535 LPVMNSLIDTYAKSGNIVYSRTIFDGMSS-----------KDIITWNSLICGYVLHGFWHAALDLFDQMKSF------GL 597 (868)
Q Consensus 535 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~ 597 (868)
..++..+...|...|++++|...|++... .....|+.+...|...|++++|++.|+++.+. +.
T Consensus 111 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 190 (311)
T 3nf1_A 111 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPD 190 (311)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 34455566666666666666666654431 12234556666666666666666666666552 11
Q ss_pred CCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhc------CCCCC-------hhHHHHHHHhhhhcCChHHHHHHHHhC
Q 047992 598 KPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECY------QIIPM-------IEHYSAMIDLYGRSGKLEEAMEFIEDM 663 (868)
Q Consensus 598 ~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~-------~~~y~~lvd~l~r~g~~~eA~~~i~~~ 663 (868)
.|+. .++..+..++...|++++|..+|+.+.+.. ...|. ...+..+...+...+.+.+|...++..
T Consensus 191 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 270 (311)
T 3nf1_A 191 DPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKAC 270 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC------
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhc
Confidence 3332 344555556666666666666666555421 01111 111112222233333444444444443
Q ss_pred C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 047992 664 P-IEPD-SSIWEALLTACRIHGNIDLAVLAIERLFDLEP 700 (868)
Q Consensus 664 ~-~~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p 700 (868)
. ..|+ ..+|..+..++...|+++.|...+++++++.|
T Consensus 271 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 271 KVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 1 2222 22455555555555555555555555555544
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.13 E-value=6.9e-10 Score=106.18 Aligned_cols=159 Identities=18% Similarity=0.131 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHh
Q 047992 536 PVMNSLIDTYAKSGNIVYSRTIFDGMSS---KDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN-RGTFLSIILAH 611 (868)
Q Consensus 536 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 611 (868)
..+..+...|.+.|++++|...|+++.. .+...|..+...|...|++++|++.|+++.+. .|+ ...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 4456667777777777777777776653 34455666666677777777777777776652 332 23344444444
Q ss_pred hccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047992 612 SLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLA 691 (868)
Q Consensus 612 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~ 691 (868)
...|+.++|..+|+.+.+. .+.+..+|..+...+...|+++.|...
T Consensus 87 ~~~~~~~~A~~~~~~~~~~----------------------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA----------------------------------NPINFNVRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH----------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc----------------------------------CcHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence 4444444444444444332 122344666666666666777777777
Q ss_pred HHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 692 IERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 692 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
++++++..|+++..+..++.+|...|++++|.+..+...
T Consensus 133 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777777777777777777777777777776655543
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.11 E-value=1.2e-09 Score=104.58 Aligned_cols=170 Identities=14% Similarity=0.048 Sum_probs=128.6
Q ss_pred HhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHH
Q 047992 501 VTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYV 577 (868)
Q Consensus 501 ~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~ 577 (868)
..+..+...+...|+.+.+...+..+++. .+.+..++..+...|.+.|++++|...|+++. +.+...|..+...|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34555666778889999999998887663 22367888999999999999999999999764 456778999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHH
Q 047992 578 LHGFWHAALDLFDQMKSFGLKPN-RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEA 656 (868)
Q Consensus 578 ~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA 656 (868)
..|++++|++.|+++.+. .|+ ...+..+..++...|+.++|..+|+.+.+.
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------------------------- 139 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL-------------------------- 139 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--------------------------
Confidence 999999999999999884 443 345555555555555555555555554431
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHH
Q 047992 657 MEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQR 707 (868)
Q Consensus 657 ~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~ 707 (868)
.+.+..+|..+...+...|+++.|...++++++++|+++....
T Consensus 140 --------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 182 (186)
T 3as5_A 140 --------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVELA 182 (186)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGGGG
T ss_pred --------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhhHh
Confidence 1234557777888888889999999999999999888776543
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.11 E-value=3.7e-10 Score=118.47 Aligned_cols=231 Identities=13% Similarity=0.089 Sum_probs=154.0
Q ss_pred HHhHHHHHHHHhchhchHHHHHHHHHHHHh-------CCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---------
Q 047992 500 CVTILSVLPACAYLVASNKVKEIHGCVLRR-------SLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSS--------- 563 (868)
Q Consensus 500 ~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~-------~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--------- 563 (868)
..++..+...+...|+++.+...+..+++. ..+....++..+...|...|++++|...|++...
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 455666667778888888888888887763 2233556777888888888998888888876531
Q ss_pred --CCceecHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhc---
Q 047992 564 --KDIITWNSLICGYVLHGFWHAALDLFDQMKSF------GLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECY--- 631 (868)
Q Consensus 564 --~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~--- 631 (868)
....+|+.+...|...|++++|++.|+++.+. +-.|+. ..+..+...+...|++++|..+|+.+.+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 12456788888888888899999888888763 223433 456677778888888888888888876642
Q ss_pred --CCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhCC----------CCCCHH-HHH------HHHHHHHhcCCHHHHHHH
Q 047992 632 --QIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDMP----------IEPDSS-IWE------ALLTACRIHGNIDLAVLA 691 (868)
Q Consensus 632 --~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~~----------~~p~~~-~w~------~ll~a~~~~~~~~~a~~~ 691 (868)
+..| ....+..+..+|.+.|++++|.+.++++- ..|... .|. .+...+...+.++.+...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 1122 23467778888888888888888887651 111111 222 222233344556666667
Q ss_pred HHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 692 IERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 692 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
++++.+..|.++..+..|+.+|...|++++|.+..+...
T Consensus 267 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 267 YKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777889999999999999999999999999876553
No 76
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.10 E-value=1.4e-09 Score=118.14 Aligned_cols=161 Identities=12% Similarity=0.097 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----ceecHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH-H
Q 047992 537 VMNSLIDTYAKSGNIVYSRTIFDGMSS-----KD----IITWNSLICGYVLHGFWHAALDLFDQMKSF----GLKPNR-G 602 (868)
Q Consensus 537 ~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~ 602 (868)
+++.+...|...|++++|...|++... ++ ..+|+.+...|...|++++|++.|++..+. +..|+. .
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 344555555555555555555554321 11 124555555555555555555555555441 121222 3
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHhhhhcCC---CCChhHHHHHHHhhhhcCC---hHHHHHHHHhCCCCCCHH-HHHHH
Q 047992 603 TFLSIILAHSLAGMVDLGKKVFCSITECYQI---IPMIEHYSAMIDLYGRSGK---LEEAMEFIEDMPIEPDSS-IWEAL 675 (868)
Q Consensus 603 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~---~p~~~~y~~lvd~l~r~g~---~~eA~~~i~~~~~~p~~~-~w~~l 675 (868)
++..+..++...|+.++|..+|+...+...- ......+..+..++...|+ +++|.+++++.+..|+.. ++..|
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~l 345 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 4444455555555555555555544332111 1111123344444555555 555555555543333222 33344
Q ss_pred HHHHHhcCCHHHHHHHHHHHhc
Q 047992 676 LTACRIHGNIDLAVLAIERLFD 697 (868)
Q Consensus 676 l~a~~~~~~~~~a~~~~~~~~~ 697 (868)
...+...|+++.|...++++++
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 4444444555555555444444
No 77
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.05 E-value=7.2e-10 Score=123.88 Aligned_cols=177 Identities=8% Similarity=-0.047 Sum_probs=153.5
Q ss_pred HHHHHHHHhcCC---CCCceecHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCChHHHHHHHH
Q 047992 551 IVYSRTIFDGMS---SKDIITWNSLICGYVLHGFW-HAALDLFDQMKSFGLKPN-RGTFLSIILAHSLAGMVDLGKKVFC 625 (868)
Q Consensus 551 ~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 625 (868)
+++|.+.++... +.+...|..+...|...|++ ++|++.|++.++ ..|+ ...+..+..++...|++++|..+|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455566665443 34677899999999999999 999999999998 5676 5788889999999999999999999
Q ss_pred HhhhhcCCCCChhHHHHHHHhhhhc---------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CCHH
Q 047992 626 SITECYQIIPMIEHYSAMIDLYGRS---------GKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIH--------GNID 686 (868)
Q Consensus 626 ~m~~~~~~~p~~~~y~~lvd~l~r~---------g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~--------~~~~ 686 (868)
...+ +.|+...+..+..+|.+. |++++|.+.+++. ...| +...|..|..++... |+++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9876 468888899999999999 9999999999987 4445 466999999999888 9999
Q ss_pred HHHHHHHHHhccCC---CCchhHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 687 LAVLAIERLFDLEP---GDVLIQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 687 ~a~~~~~~~~~l~p---~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
.|...++++++++| +++.+|..|+.+|...|++++|.+..+...+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999 99999999999999999999999987766543
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.02 E-value=2.6e-09 Score=106.50 Aligned_cols=153 Identities=9% Similarity=-0.031 Sum_probs=132.3
Q ss_pred CCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC-hhHHHH
Q 047992 564 KDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM-IEHYSA 642 (868)
Q Consensus 564 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~ 642 (868)
.|+..|......+...|++++|++.|++.++....++...+..+..++...|++++|+.+|+...+ ..|+ ...|..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHH
Confidence 456778888899999999999999999999854336777777788899999999999999999886 3443 567888
Q ss_pred HHHhhhhcCChHHHHHHHHhC-CCCCC-H-------HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--CchhHHHHHH
Q 047992 643 MIDLYGRSGKLEEAMEFIEDM-PIEPD-S-------SIWEALLTACRIHGNIDLAVLAIERLFDLEPG--DVLIQRLILQ 711 (868)
Q Consensus 643 lvd~l~r~g~~~eA~~~i~~~-~~~p~-~-------~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~--~~~~~~~l~~ 711 (868)
+..+|.+.|++++|.+.+++. ...|+ . .+|..+...+...|+++.|...++++++++|+ ++.+|..|+.
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 999999999999999999987 33343 3 45788888889999999999999999999999 9999999999
Q ss_pred HHhhcCCC
Q 047992 712 IYAICGKP 719 (868)
Q Consensus 712 ~y~~~g~~ 719 (868)
+|...|+.
T Consensus 162 ~~~~~~~~ 169 (228)
T 4i17_A 162 LFYNNGAD 169 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999988
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.00 E-value=6.6e-09 Score=112.62 Aligned_cols=232 Identities=7% Similarity=0.040 Sum_probs=144.1
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCCCCC----CeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhc
Q 047992 437 SGYIQNGNEDEAVDLFQRMGKNDKVKR----NTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAY 512 (868)
Q Consensus 437 ~~~~~~g~~~~A~~~f~~m~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 512 (868)
..+...|++++|...|++..+.....+ ...++..+...|...|++++|+..+.+....-..
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~--------------- 173 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQN--------------- 173 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT---------------
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh---------------
Confidence 344567777777777776654321111 2235556666666777777777666655421000
Q ss_pred hhchHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----ceecHHHHHHHHhcCCh
Q 047992 513 LVASNKVKEIHGCVLRRSLES-SLPVMNSLIDTYAKSGNIVYSRTIFDGMSS-----KD----IITWNSLICGYVLHGFW 582 (868)
Q Consensus 513 ~~~~~~~~~i~~~~~~~~~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~d----~~~~~~li~~~~~~g~~ 582 (868)
.+ +..+ ...+++.+...|...|++++|.+.|++... ++ ..+++.+...|...|++
T Consensus 174 ~~---------------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~ 238 (378)
T 3q15_A 174 HP---------------LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD 238 (378)
T ss_dssp ST---------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CC---------------CchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCH
Confidence 00 0000 133566777888888888888887775432 12 23677778888888888
Q ss_pred HHHHHHHHHHHHC---CCCCC-HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC---hhHHHHHHHhhhhcCC---
Q 047992 583 HAALDLFDQMKSF---GLKPN-RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM---IEHYSAMIDLYGRSGK--- 652 (868)
Q Consensus 583 ~~A~~l~~~m~~~---g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~lvd~l~r~g~--- 652 (868)
++|++.|++..+. ...|+ ..++..+..++.+.|+.++|..+|+...+...-.++ ..++..+..++...|.
T Consensus 239 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~ 318 (378)
T 3q15_A 239 QMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK 318 (378)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHH
T ss_pred HHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH
Confidence 8888888887661 01232 356667777788888888888888877664332222 3345566666777777
Q ss_pred hHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 047992 653 LEEAMEFIEDMPIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFDL 698 (868)
Q Consensus 653 ~~eA~~~i~~~~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l 698 (868)
+++|.+++++....|+.. .+..+...+...|+++.|...+++++++
T Consensus 319 ~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 319 IHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 788888888765444433 5556666677777777777777777654
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.00 E-value=4.4e-08 Score=105.84 Aligned_cols=261 Identities=13% Similarity=0.037 Sum_probs=162.6
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCCCCCCe-----eehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHH
Q 047992 436 ISGYIQNGNEDEAVDLFQRMGKNDKVKRNT-----ASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPAC 510 (868)
Q Consensus 436 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 510 (868)
...+...|++++|...+++..... +++. ..++.+...+...|++++|...+++.....-
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------- 84 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMAR-------------- 84 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH--------------
Confidence 344556677777777777655432 1111 1334445555666666666666665442100
Q ss_pred hchhchHHHHHHHHHHHHhCCC-CChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------C----CceecHHHHHHHHh
Q 047992 511 AYLVASNKVKEIHGCVLRRSLE-SSLPVMNSLIDTYAKSGNIVYSRTIFDGMSS-------K----DIITWNSLICGYVL 578 (868)
Q Consensus 511 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-------~----d~~~~~~li~~~~~ 578 (868)
+.+.. ........+...|...|++++|...+++... + ....++.+...|..
T Consensus 85 -----------------~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 147 (373)
T 1hz4_A 85 -----------------QHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA 147 (373)
T ss_dssp -----------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH
T ss_pred -----------------hcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHH
Confidence 00000 0112345667777888888888877775431 1 12345667777888
Q ss_pred cCChHHHHHHHHHHHHCCCC--C-C-HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHH-----HHHHhhhh
Q 047992 579 HGFWHAALDLFDQMKSFGLK--P-N-RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYS-----AMIDLYGR 649 (868)
Q Consensus 579 ~g~~~~A~~l~~~m~~~g~~--p-~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~-----~lvd~l~r 649 (868)
.|++++|...+++....... | . ..++..+...+...|++++|..+++.......-......+. ..+.++.+
T Consensus 148 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (373)
T 1hz4_A 148 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM 227 (373)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH
Confidence 88888888888888763221 1 1 23556666677888999999988887765322211111121 23345778
Q ss_pred cCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------chhHHHHHHHHhhcC
Q 047992 650 SGKLEEAMEFIEDM-PIEPD-----SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGD------VLIQRLILQIYAICG 717 (868)
Q Consensus 650 ~g~~~eA~~~i~~~-~~~p~-----~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~------~~~~~~l~~~y~~~g 717 (868)
.|++++|...+++. ...|. ...+..+...+...|+.+.|...++++++..+.. ...+..++.+|...|
T Consensus 228 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 307 (373)
T 1hz4_A 228 TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 307 (373)
T ss_dssp TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhC
Confidence 89999999999887 22221 2356677777888899999999999988765432 236778899999999
Q ss_pred CChhHHHHHHHH
Q 047992 718 KPEDALKVRKLE 729 (868)
Q Consensus 718 ~~~~a~~~~~~m 729 (868)
++++|....+..
T Consensus 308 ~~~~A~~~l~~a 319 (373)
T 1hz4_A 308 RKSDAQRVLLDA 319 (373)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999998865544
No 81
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.99 E-value=1.9e-09 Score=117.14 Aligned_cols=195 Identities=12% Similarity=0.050 Sum_probs=147.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC-----ceecHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCH--
Q 047992 535 LPVMNSLIDTYAKSGNIVYSRTIFDGMSS-----KD-----IITWNSLICGYVLHGFWHAALDLFDQMKSFGL-KPNR-- 601 (868)
Q Consensus 535 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~d-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~-- 601 (868)
..++..+...|...|+++.|...|++... ++ ..+++.+...|...|++++|++.|++..+... .+|.
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 222 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL 222 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH
Confidence 34677788899999999988888876531 11 34788899999999999999999999876211 1222
Q ss_pred --HHHHHHHHHhhccCChHHHHHHHHHhhhhc---CCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhC-C---C--CCCH
Q 047992 602 --GTFLSIILAHSLAGMVDLGKKVFCSITECY---QIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDM-P---I--EPDS 669 (868)
Q Consensus 602 --~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~---~--~p~~ 669 (868)
.++..+...+...|+.++|..+|+...+.. +..| ....+..+..++.+.|++++|.+.+++. . . .|..
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 302 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY 302 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 477788889999999999999999876622 2313 3556888999999999999999999886 1 1 2222
Q ss_pred H-HHHHHHHHHHhcCC---HHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 670 S-IWEALLTACRIHGN---IDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 670 ~-~w~~ll~a~~~~~~---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
. .+..|...+...|+ ++.|...+++. ...|.....+..|+.+|...|++++|.+..+...
T Consensus 303 ~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 303 LSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2 34556666777788 77777777776 4555666788999999999999999999766553
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.96 E-value=1.5e-09 Score=126.30 Aligned_cols=163 Identities=14% Similarity=0.156 Sum_probs=144.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIIL 609 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~ 609 (868)
+...++.|...|.+.|++++|.+.|++.. +.+..+|+.+...|.+.|++++|++.|++.++ +.|+. ..+..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 56788999999999999999999999764 56778999999999999999999999999999 77865 78889999
Q ss_pred HhhccCChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHH
Q 047992 610 AHSLAGMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRIHGNID 686 (868)
Q Consensus 610 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~~~ 686 (868)
++...|+.++|++.|+...+ +.|+ .+.|..+..+|.+.|++++|++.+++. ...|+ ...|..|..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999887 3454 668999999999999999999999987 55665 558999999999999999
Q ss_pred HHHHHHHHHhccCCC
Q 047992 687 LAVLAIERLFDLEPG 701 (868)
Q Consensus 687 ~a~~~~~~~~~l~p~ 701 (868)
.|++.+++++++.|+
T Consensus 163 ~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 163 DYDERMKKLVSIVAD 177 (723)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh
Confidence 999999999987664
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.95 E-value=7.6e-08 Score=103.95 Aligned_cols=268 Identities=11% Similarity=-0.031 Sum_probs=161.1
Q ss_pred HHHHhcCChhHHHHHHHHhHhCCCCCCee----ehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCC----eeehhhhHH
Q 047992 402 AGYCQAGYCGKAYELFIKMQESDVPPNVI----TWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRN----TASWNSLIA 473 (868)
Q Consensus 402 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~----~~~~~~li~ 473 (868)
..+...|++++|...+++........+.. +++.+...|...|++++|...+++......-..+ ..++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34455667777777776665543111111 3455556677778888888877776432111111 122445666
Q ss_pred HHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCC--C-ChhHHHHHHHHHHhcCC
Q 047992 474 GYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLE--S-SLPVMNSLIDTYAKSGN 550 (868)
Q Consensus 474 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~--~-~~~~~~~Li~~y~k~g~ 550 (868)
.+...|++++|...+++..... .+.+.. + ....+..+...|...|+
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~ 150 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLI-------------------------------NEQHLEQLPMHEFLVRIRAQLLWAWAR 150 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH-------------------------------HHTTCTTSTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhccccCcHHHHHHHHHHHHHHHhcC
Confidence 6777778877777777654310 000111 1 22345556777778888
Q ss_pred HHHHHHHHhcCCC--C------CceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHH-----HHHHHhhccCC
Q 047992 551 IVYSRTIFDGMSS--K------DIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFL-----SIILAHSLAGM 616 (868)
Q Consensus 551 ~~~A~~~f~~~~~--~------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~-----~ll~a~~~~g~ 616 (868)
+++|...+++... + ...+|..+...+...|++++|+..+++.....-.++. ..+. ..+..+...|+
T Consensus 151 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 230 (373)
T 1hz4_A 151 LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD 230 (373)
T ss_dssp HHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCC
Confidence 8888887775421 1 1235666777788888888888888887653222221 1222 22234667888
Q ss_pred hHHHHHHHHHhhhhcCCCCC--hhHHHHHHHhhhhcCChHHHHHHHHhC-------CCCCCHH-HHHHHHHHHHhcCCHH
Q 047992 617 VDLGKKVFCSITECYQIIPM--IEHYSAMIDLYGRSGKLEEAMEFIEDM-------PIEPDSS-IWEALLTACRIHGNID 686 (868)
Q Consensus 617 ~~~a~~~~~~m~~~~~~~p~--~~~y~~lvd~l~r~g~~~eA~~~i~~~-------~~~p~~~-~w~~ll~a~~~~~~~~ 686 (868)
.++|..+++.......-.+. ...+..+..++...|++++|.+.+++. +..++.. ++..+..++...|+.+
T Consensus 231 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 310 (373)
T 1hz4_A 231 KAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS 310 (373)
T ss_dssp HHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHH
Confidence 88888888877652211111 224566778888889999988888765 1111222 5555666778889999
Q ss_pred HHHHHHHHHhccCC
Q 047992 687 LAVLAIERLFDLEP 700 (868)
Q Consensus 687 ~a~~~~~~~~~l~p 700 (868)
.|...+++++++.+
T Consensus 311 ~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 311 DAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887765
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.94 E-value=3.4e-09 Score=109.14 Aligned_cols=218 Identities=15% Similarity=0.136 Sum_probs=146.8
Q ss_pred hhchHHHHHHHHHHHHh-------CCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----------CCceecHHHHH
Q 047992 513 LVASNKVKEIHGCVLRR-------SLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSS-----------KDIITWNSLIC 574 (868)
Q Consensus 513 ~~~~~~~~~i~~~~~~~-------~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----------~d~~~~~~li~ 574 (868)
.|+.+.|...+...++. ..+....++..+...|...|++++|...|++... ....+|+.+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 45555555555555441 2223566788899999999999999998886541 13457888889
Q ss_pred HHHhcCChHHHHHHHHHHHHC------CCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhc-----CCCC-ChhHHH
Q 047992 575 GYVLHGFWHAALDLFDQMKSF------GLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECY-----QIIP-MIEHYS 641 (868)
Q Consensus 575 ~~~~~g~~~~A~~l~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~y~ 641 (868)
.|...|++++|++.|++.... .-.|+. .++..+...+...|++++|..+|+...+.. +..| ....+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 999999999999999998763 113433 567777788889999999999999887641 1122 245677
Q ss_pred HHHHhhhhcCChHHHHHHHHhC-C---------CCCCH-HHHHHHHHHHHhcC------CHHHHHHHHHHHhccCCCCch
Q 047992 642 AMIDLYGRSGKLEEAMEFIEDM-P---------IEPDS-SIWEALLTACRIHG------NIDLAVLAIERLFDLEPGDVL 704 (868)
Q Consensus 642 ~lvd~l~r~g~~~eA~~~i~~~-~---------~~p~~-~~w~~ll~a~~~~~------~~~~a~~~~~~~~~l~p~~~~ 704 (868)
.+..++.+.|++++|.++++++ . ..|.. ..|..+.......+ .+..+...++.+....|..+.
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNT 253 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 8888899999999999888776 1 12222 24444444333322 244444444444445577778
Q ss_pred hHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 705 IQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 705 ~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
.+..|+.+|...|++++|.+..+...
T Consensus 254 ~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 254 TLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 89999999999999999999877553
No 85
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.92 E-value=7.2e-10 Score=102.33 Aligned_cols=111 Identities=18% Similarity=0.134 Sum_probs=73.8
Q ss_pred HHHHHHhhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh
Q 047992 605 LSIILAHSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRI 681 (868)
Q Consensus 605 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~ 681 (868)
..+...+...|++++|+.+|+...+. .| +...|..+..+|.+.|++++|++.+++. ...|+ ..+|..+...+..
T Consensus 35 ~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 35 FYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33444444444444444444444331 22 2344556666666677777777776665 34454 5588888888888
Q ss_pred cCCHHHHHHH-HHHHhccCCCCchhHHHHHHHHhhcCC
Q 047992 682 HGNIDLAVLA-IERLFDLEPGDVLIQRLILQIYAICGK 718 (868)
Q Consensus 682 ~~~~~~a~~~-~~~~~~l~p~~~~~~~~l~~~y~~~g~ 718 (868)
.|+.+.|.+. ++++++++|+++.+|.+++.++...|+
T Consensus 112 ~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 112 NDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred cCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8988766554 699999999999999999999988885
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.90 E-value=1.8e-08 Score=102.71 Aligned_cols=186 Identities=14% Similarity=0.063 Sum_probs=137.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-C---ceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HH
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMSS--K-D---IITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR----GT 603 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~-d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t 603 (868)
+...+..+...|.+.|++++|...|+++.. | + ...|..+...|...|++++|++.|++.++ ..|+. ..
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ--IYQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH--HCCCCchhHHH
Confidence 556666777888889999999999987753 2 3 45677888888999999999999999988 34432 34
Q ss_pred HHHHHHHhhc--------cCChHHHHHHHHHhhhhcCCCCChhH-H--------------HHHHHhhhhcCChHHHHHHH
Q 047992 604 FLSIILAHSL--------AGMVDLGKKVFCSITECYQIIPMIEH-Y--------------SAMIDLYGRSGKLEEAMEFI 660 (868)
Q Consensus 604 ~~~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~~~~-y--------------~~lvd~l~r~g~~~eA~~~i 660 (868)
+..+..++.. .|+.++|+..|+...+.++-.|.... . ..+..+|.+.|++++|.+.+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 5555666666 89999999999988886655444321 1 45688899999999999999
Q ss_pred HhC----CCCCC-HHHHHHHHHHHHhc----------CCHHHHHHHHHHHhccCCCCch---hHHHHHHHHhhcCCChh
Q 047992 661 EDM----PIEPD-SSIWEALLTACRIH----------GNIDLAVLAIERLFDLEPGDVL---IQRLILQIYAICGKPED 721 (868)
Q Consensus 661 ~~~----~~~p~-~~~w~~ll~a~~~~----------~~~~~a~~~~~~~~~l~p~~~~---~~~~l~~~y~~~g~~~~ 721 (868)
+++ |-.|. ...|..+..++... |+++.|...++++++..|+++. ++..|..++...|+.++
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 887 43332 33677777777655 8999999999999999999864 45566666655555443
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.87 E-value=2.3e-08 Score=103.85 Aligned_cols=169 Identities=9% Similarity=0.034 Sum_probs=113.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----ceecHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCC-----
Q 047992 536 PVMNSLIDTYAKSGNIVYSRTIFDGMSS-----KD----IITWNSLICGYVLH-GFWHAALDLFDQMKSFGLKPN----- 600 (868)
Q Consensus 536 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~d----~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~----- 600 (868)
.+++.+..+|.+.|++++|...|++... .+ ..+|+.+...|... |++++|++.|++.++ +.|+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~--~~~~~~~~~ 155 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE--WYAQDQSVA 155 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HHHHTTCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH--HHHhCCChH
Confidence 4566777778888888888777775432 11 34677788888886 888888888888876 3332
Q ss_pred --HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCCh-----hHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHH--
Q 047992 601 --RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMI-----EHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSS-- 670 (868)
Q Consensus 601 --~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~-- 670 (868)
..++..+...+...|++++|+.+|+...+...-.+.. ..|..++.++...|++++|...+++. .+.|+..
T Consensus 156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 2456677778888888888888888877643322222 14666777788888888888888887 4445422
Q ss_pred ----HHHHHHHHHH--hcCCHHHHHHHHHHHhccCCCCchhH
Q 047992 671 ----IWEALLTACR--IHGNIDLAVLAIERLFDLEPGDVLIQ 706 (868)
Q Consensus 671 ----~w~~ll~a~~--~~~~~~~a~~~~~~~~~l~p~~~~~~ 706 (868)
.+..|+.++. ..++++.|...++++++++|.+....
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 3444555554 34568888888888888888654433
No 88
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.86 E-value=3.6e-08 Score=97.99 Aligned_cols=182 Identities=15% Similarity=0.064 Sum_probs=117.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC----ceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HH
Q 047992 535 LPVMNSLIDTYAKSGNIVYSRTIFDGMSS--KD----IITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRG----TF 604 (868)
Q Consensus 535 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~ 604 (868)
...+..+...|.+.|++++|...|+++.. |+ ...+..+..+|...|++++|++.|++..+ ..|+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCcHHHHH
Confidence 44555667778888888888888887652 22 23567777888888888888888888887 455542 23
Q ss_pred HHHHHHhhc------------------cCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCC
Q 047992 605 LSIILAHSL------------------AGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIE 666 (868)
Q Consensus 605 ~~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~ 666 (868)
..+..++.. .|+.++|...|+.+.+.++-.|... .. +.+.+.+.+...
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~--~a----~~~l~~~~~~~~-------- 147 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTT--DA----TKRLVFLKDRLA-------- 147 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHH--HH----HHHHHHHHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHH--HH----HHHHHHHHHHHH--------
Confidence 333333322 3455555555555554333222211 00 000000000000
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc---hhHHHHHHHHhhcCCChhHHHHHHHHHhcCCC
Q 047992 667 PDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDV---LIQRLILQIYAICGKPEDALKVRKLERENTRR 735 (868)
Q Consensus 667 p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 735 (868)
.....+...+...|+++.|...++++++..|+++ .++..++.+|...|++++|.+..+.+...+..
T Consensus 148 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 148 ---KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ---HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 0112345567789999999999999999999986 56899999999999999999999988876644
No 89
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.83 E-value=6.1e-09 Score=121.81 Aligned_cols=167 Identities=14% Similarity=0.010 Sum_probs=108.1
Q ss_pred HhcCCHHHHHHHHhcCC-----------CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhc
Q 047992 546 AKSGNIVYSRTIFDGMS-----------SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSL 613 (868)
Q Consensus 546 ~k~g~~~~A~~~f~~~~-----------~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~ 613 (868)
...|+.++|.+.|++.. +.+...|..+...|.+.|++++|++.|++..+ ..|+. ..+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHH
Confidence 45566666666666543 33455666666667777777777777777766 44543 455556666667
Q ss_pred cCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 047992 614 AGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVL 690 (868)
Q Consensus 614 ~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~ 690 (868)
.|++++|...|+...+. .| +...|..+..+|.+.|++++ ++.++++ ...| +...|..+..++...|+++.|..
T Consensus 480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777766652 23 34456666777777777777 7666665 3344 34477777777777777777777
Q ss_pred HHHHHhccCCCCchhHHHHHHHHhhcCC
Q 047992 691 AIERLFDLEPGDVLIQRLILQIYAICGK 718 (868)
Q Consensus 691 ~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 718 (868)
.++++++++|+++.+|..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 7777777777777777777777766665
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.82 E-value=2.2e-08 Score=104.04 Aligned_cols=184 Identities=9% Similarity=-0.044 Sum_probs=134.3
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC-----CC----ceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-------HHHHH
Q 047992 542 IDTYAKSGNIVYSRTIFDGMSS-----KD----IITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN-------RGTFL 605 (868)
Q Consensus 542 i~~y~k~g~~~~A~~~f~~~~~-----~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-------~~t~~ 605 (868)
+..|...|++++|...|++... .+ ..+|+.+...|...|++++|+..|++.++ +.|+ ..++.
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~~~~g~~~~~a~~~~ 121 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ--IFTHRGQFRRGANFKF 121 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HHHHcCCHHHHHHHHH
Confidence 4578889999999988886532 12 45889999999999999999999999876 2221 24677
Q ss_pred HHHHHhhcc-CChHHHHHHHHHhhhhcCCCCC----hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC---CH-----HH
Q 047992 606 SIILAHSLA-GMVDLGKKVFCSITECYQIIPM----IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP---DS-----SI 671 (868)
Q Consensus 606 ~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p---~~-----~~ 671 (868)
.+..++... |++++|+.+|+...+.+.-..+ ...|..+..+|.+.|++++|.+.+++. ...| +. ..
T Consensus 122 ~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 201 (292)
T 1qqe_A 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (292)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 888889886 9999999999988764322111 346788899999999999999999987 2222 21 15
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh-----HHHHHHHHh--hcCCChhHHHHHH
Q 047992 672 WEALLTACRIHGNIDLAVLAIERLFDLEPGDVLI-----QRLILQIYA--ICGKPEDALKVRK 727 (868)
Q Consensus 672 w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~-----~~~l~~~y~--~~g~~~~a~~~~~ 727 (868)
|..+..++...|+++.|...++++++++|+.... +..|...|. ..+++++|.+..+
T Consensus 202 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~ 264 (292)
T 1qqe_A 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD 264 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 6677777888999999999999999999987654 334555554 4566777776653
No 91
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.82 E-value=3.2e-08 Score=102.39 Aligned_cols=160 Identities=9% Similarity=-0.021 Sum_probs=122.0
Q ss_pred CCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHH
Q 047992 562 SSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHY 640 (868)
Q Consensus 562 ~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y 640 (868)
.+.+...+..+...+.+.|++++|++.|++..+ ..|+. ..+..+..++...|+.++|...|+..... .|+....
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~ 187 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQ 187 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHH
Confidence 344445566667777788888888888888877 56654 56667777788888888888888877653 3443322
Q ss_pred HHHH-HhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC--chhHHHHHHHHhh
Q 047992 641 SAMI-DLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGD--VLIQRLILQIYAI 715 (868)
Q Consensus 641 ~~lv-d~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~--~~~~~~l~~~y~~ 715 (868)
.... -.+.+.|+.++|.+.+++. ...| +...|..|..++...|+++.|...++++++.+|++ +.++..|+.+|..
T Consensus 188 ~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 188 GLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence 2222 2356677788888887776 3344 56689999999999999999999999999999998 8899999999999
Q ss_pred cCCChhHHHHH
Q 047992 716 CGKPEDALKVR 726 (868)
Q Consensus 716 ~g~~~~a~~~~ 726 (868)
.|+.++|....
T Consensus 268 ~g~~~~a~~~~ 278 (287)
T 3qou_A 268 LGTGDALASXY 278 (287)
T ss_dssp HCTTCHHHHHH
T ss_pred cCCCCcHHHHH
Confidence 99999987743
No 92
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.80 E-value=4.8e-08 Score=105.81 Aligned_cols=218 Identities=10% Similarity=-0.024 Sum_probs=154.0
Q ss_pred hchhchHHHHHHHHHHHHhC--CCC---ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC-----ceecHHHHHH
Q 047992 511 AYLVASNKVKEIHGCVLRRS--LES---SLPVMNSLIDTYAKSGNIVYSRTIFDGMSS-----KD-----IITWNSLICG 575 (868)
Q Consensus 511 ~~~~~~~~~~~i~~~~~~~~--~~~---~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~d-----~~~~~~li~~ 575 (868)
...|+.+.|...+..+++.. ... ...++..+...|...|+++.|...+++... ++ ..+++.+...
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 34455555555555554421 111 234677788899999999988888876431 12 3478889999
Q ss_pred HHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhhccCChHHHHHHHHHhhhhc---CCCCChhHHHHHHHhh
Q 047992 576 YVLHGFWHAALDLFDQMKSF----GLKPN-RGTFLSIILAHSLAGMVDLGKKVFCSITECY---QIIPMIEHYSAMIDLY 647 (868)
Q Consensus 576 ~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~~~~y~~lvd~l 647 (868)
|...|++++|++.|++..+. |-.+. ..++..+...+...|+.++|..+|+...+.. +.+.....+..+..++
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 271 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL 271 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence 99999999999999998762 11111 2466778888999999999999999877622 2222356688889999
Q ss_pred hhcCChHHHHHHHHhC----CC--CCCHH-HHHHHHHHHHhcCC---HHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 047992 648 GRSGKLEEAMEFIEDM----PI--EPDSS-IWEALLTACRIHGN---IDLAVLAIERLFDLEPGDVLIQRLILQIYAICG 717 (868)
Q Consensus 648 ~r~g~~~eA~~~i~~~----~~--~p~~~-~w~~ll~a~~~~~~---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 717 (868)
.+.|++++|.+.+++. +. .|... .+..+...+...++ ++.|...+++ ....|.....+..|+.+|...|
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~la~~y~~~g 350 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNLHAYIEACARSAAAVFESSC 350 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHCC
Confidence 9999999999999886 21 23333 44455555666777 7777777776 2344555677889999999999
Q ss_pred CChhHHHHHHHH
Q 047992 718 KPEDALKVRKLE 729 (868)
Q Consensus 718 ~~~~a~~~~~~m 729 (868)
++++|.+..+..
T Consensus 351 ~~~~A~~~~~~a 362 (378)
T 3q15_A 351 HFEQAAAFYRKV 362 (378)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999976554
No 93
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.79 E-value=9.6e-08 Score=98.13 Aligned_cols=166 Identities=12% Similarity=0.012 Sum_probs=108.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----------CCceecHHHHHHHHhcCChHHHHHHHHHHHHC------C
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMSS-----------KDIITWNSLICGYVLHGFWHAALDLFDQMKSF------G 596 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g 596 (868)
...++..+...|...|++++|.+.|++... ....+|..+...|...|++++|++.|+++.+. +
T Consensus 84 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 163 (283)
T 3edt_B 84 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGP 163 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 345677788888888888888888876531 12457788888888999999999999888773 1
Q ss_pred CCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhc------CCCCC-hhHHHHHHHhhh------hcCChHHHHHHHHh
Q 047992 597 LKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECY------QIIPM-IEHYSAMIDLYG------RSGKLEEAMEFIED 662 (868)
Q Consensus 597 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~-~~~y~~lvd~l~------r~g~~~eA~~~i~~ 662 (868)
-.|+. .++..+..++...|+.++|..+|+...+.. ...|. ...+..+..... ....+.++...++.
T Consensus 164 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (283)
T 3edt_B 164 DDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKA 243 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------C
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh
Confidence 14433 567778888889999999999998876631 11222 222333333322 23446666666666
Q ss_pred CC-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 047992 663 MP-IEPDS-SIWEALLTACRIHGNIDLAVLAIERLFDLE 699 (868)
Q Consensus 663 ~~-~~p~~-~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~ 699 (868)
.. ..|+. .+|..|...+...|+++.|...+++++++.
T Consensus 244 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 244 CKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 63 33433 378888899999999999999999998764
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.79 E-value=6.2e-08 Score=98.75 Aligned_cols=168 Identities=12% Similarity=0.039 Sum_probs=136.4
Q ss_pred CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC-h
Q 047992 563 SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN----RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM-I 637 (868)
Q Consensus 563 ~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~ 637 (868)
+.+...+..+...+...|++++|++.|+++++ ..|+ ...+..+..++...|++++|...|+...+.++-.|. .
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFT--YGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGG--GCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 45566777788889999999999999999998 4565 356777888899999999999999999987665554 4
Q ss_pred hHHHHHHHhhhh--------cCChHHHHHHHHhC-CCCCCH-HHH-----------------HHHHHHHHhcCCHHHHHH
Q 047992 638 EHYSAMIDLYGR--------SGKLEEAMEFIEDM-PIEPDS-SIW-----------------EALLTACRIHGNIDLAVL 690 (868)
Q Consensus 638 ~~y~~lvd~l~r--------~g~~~eA~~~i~~~-~~~p~~-~~w-----------------~~ll~a~~~~~~~~~a~~ 690 (868)
..+..+..++.+ .|++++|.+.+++. ...|+. ..+ ..+...+...|+++.|..
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 567778888888 99999999999887 223332 233 455777889999999999
Q ss_pred HHHHHhccCCCCc---hhHHHHHHHHhhc----------CCChhHHHHHHHHHhc
Q 047992 691 AIERLFDLEPGDV---LIQRLILQIYAIC----------GKPEDALKVRKLEREN 732 (868)
Q Consensus 691 ~~~~~~~l~p~~~---~~~~~l~~~y~~~----------g~~~~a~~~~~~m~~~ 732 (868)
.++++++..|+++ .++..++.+|... |++++|....+...+.
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 9999999999854 5889999999977 8999999988776543
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.78 E-value=6e-07 Score=91.42 Aligned_cols=78 Identities=14% Similarity=0.023 Sum_probs=38.6
Q ss_pred ChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc----------CCCCchhHHHHHHHHhhcCCCh
Q 047992 652 KLEEAMEFIEDM-PIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDL----------EPGDVLIQRLILQIYAICGKPE 720 (868)
Q Consensus 652 ~~~eA~~~i~~~-~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l----------~p~~~~~~~~l~~~y~~~g~~~ 720 (868)
++++|..+|+++ ...|+...-..|++++...|+++.|+..++.++++ +|+|+.++..+..++...|+
T Consensus 193 ~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk-- 270 (310)
T 3mv2_B 193 TATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL-- 270 (310)
T ss_dssp TTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--
T ss_pred cHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--
Confidence 555555555554 22233111122333445556666666666655554 35555555555555555554
Q ss_pred hHHHHHHHHHh
Q 047992 721 DALKVRKLERE 731 (868)
Q Consensus 721 ~a~~~~~~m~~ 731 (868)
+|.+++..+++
T Consensus 271 ~a~~l~~qL~~ 281 (310)
T 3mv2_B 271 DTEDLTNQLVK 281 (310)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555543
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.76 E-value=1.1e-07 Score=84.99 Aligned_cols=126 Identities=17% Similarity=0.237 Sum_probs=68.9
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHh
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDL 646 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~ 646 (868)
.|..+...|...|++++|+++|+++.+. .| +...+..+...+...|++++|..+|+.+.+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------- 65 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------------- 65 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC---------------
Confidence 3555666666777777777777776653 23 23444444555555555555555555544321
Q ss_pred hhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHH
Q 047992 647 YGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVR 726 (868)
Q Consensus 647 l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 726 (868)
+.+..+|..+...+...|+++.|...++++++..|+++..+..++.+|...|++++|.+..
T Consensus 66 -------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 66 -------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp -------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred -------------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHH
Confidence 1223344445555555555555555555555555555555555555555555555555554
Q ss_pred HHH
Q 047992 727 KLE 729 (868)
Q Consensus 727 ~~m 729 (868)
+.+
T Consensus 127 ~~~ 129 (136)
T 2fo7_A 127 QKA 129 (136)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.74 E-value=9.8e-08 Score=85.32 Aligned_cols=95 Identities=18% Similarity=0.275 Sum_probs=81.5
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 047992 639 HYSAMIDLYGRSGKLEEAMEFIEDM-PI-EPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAIC 716 (868)
Q Consensus 639 ~y~~lvd~l~r~g~~~eA~~~i~~~-~~-~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 716 (868)
.|..++..+.+.|++++|.++++++ .. +.+..+|..+...+...|+++.|...++++++..|+++..+..++.+|...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 4566778888888999998888876 22 235668888888899999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHhcC
Q 047992 717 GKPEDALKVRKLERENT 733 (868)
Q Consensus 717 g~~~~a~~~~~~m~~~~ 733 (868)
|++++|.+..+.+.+..
T Consensus 83 ~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD 99 (136)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 99999999888776554
No 98
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.73 E-value=6.8e-08 Score=91.73 Aligned_cols=74 Identities=11% Similarity=0.144 Sum_probs=60.7
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC--chhHHHHHHHHhhcCCChhHHHHHHH
Q 047992 655 EAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGD--VLIQRLILQIYAICGKPEDALKVRKL 728 (868)
Q Consensus 655 eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~--~~~~~~l~~~y~~~g~~~~a~~~~~~ 728 (868)
+|.+.+++. ...| +...|..+..++...|+++.|...++++++++|+. +.++..|+.+|...|+.++|....+.
T Consensus 92 ~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 92 PELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 355555554 3345 46688899999999999999999999999999975 56999999999999999999886553
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.69 E-value=2.6e-07 Score=107.99 Aligned_cols=194 Identities=12% Similarity=0.073 Sum_probs=149.5
Q ss_pred hchhchHHHHHHHHHHHH------hCC-CCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcC
Q 047992 511 AYLVASNKVKEIHGCVLR------RSL-ESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHG 580 (868)
Q Consensus 511 ~~~~~~~~~~~i~~~~~~------~~~-~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g 580 (868)
...++.+++.+.+..+++ ... +.+...+..+...|.+.|++++|.+.|++.. +.+...|+.+...|...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 455666666666666651 013 3366788889999999999999999999765 457788999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHHHH
Q 047992 581 FWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEAME 658 (868)
Q Consensus 581 ~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA~~ 658 (868)
++++|++.|++.++ +.|+. ..+..+..++...|++++ ...|+...+. .| +...|..+..+|.+.|++++|.+
T Consensus 482 ~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 482 DYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp CHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999998 67865 778888889999999999 9999998873 34 45678889999999999999999
Q ss_pred HHHhC-CCCCCHH-HHHHHHHHHHhcCC-----HHHHHHHHHHHhccCCCCchhHHHHH
Q 047992 659 FIEDM-PIEPDSS-IWEALLTACRIHGN-----IDLAVLAIERLFDLEPGDVLIQRLIL 710 (868)
Q Consensus 659 ~i~~~-~~~p~~~-~w~~ll~a~~~~~~-----~~~a~~~~~~~~~l~p~~~~~~~~l~ 710 (868)
.++++ ...|+.. .|..+..++...++ .+...++.+.+.++.|+++..+.+..
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l~~ 614 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQIRA 614 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHHHH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 99998 5778755 77777777655554 46666666777777776666554443
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.68 E-value=2e-08 Score=92.54 Aligned_cols=114 Identities=14% Similarity=0.031 Sum_probs=95.2
Q ss_pred HHhhccCChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCH
Q 047992 609 LAHSLAGMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRIHGNI 685 (868)
Q Consensus 609 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~~ 685 (868)
..+...|++++|+..+..... ..|+ ...+..+..+|.+.|++++|++.+++. ...|+ ..+|..+...+...|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 345567888888888887654 3332 334567889999999999999999988 55564 56999999999999999
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHH
Q 047992 686 DLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKV 725 (868)
Q Consensus 686 ~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 725 (868)
+.|...++++++++|+++.+|..|+.+|...|++++|.+.
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~ 121 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKY 121 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 9999999999999999999999999999999999988764
No 101
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.63 E-value=5.2e-07 Score=91.85 Aligned_cols=181 Identities=13% Similarity=0.062 Sum_probs=131.7
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CCceecHHHHHHHHhcCChHHHHHHHHHHHH
Q 047992 520 KEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSS-----KDIITWNSLICGYVLHGFWHAALDLFDQMKS 594 (868)
Q Consensus 520 ~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 594 (868)
...+..++..+ .++......+...|...|++++|.+++.+... .+...+-.++..|.+.|+.+.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33344444333 34455556888999999999999999997632 3455777788999999999999999999988
Q ss_pred CCCCC-----CHHHHHHHHHH--hhccC--ChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-C
Q 047992 595 FGLKP-----NRGTFLSIILA--HSLAG--MVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-P 664 (868)
Q Consensus 595 ~g~~p-----~~~t~~~ll~a--~~~~g--~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~ 664 (868)
..| +..+...+..+ ....| ...+|..+|+.+.+.+ |+......+..++.+.|+++||++.++.+ .
T Consensus 165 --~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~---p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 --AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF---PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp --HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS---CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred --cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 678 36666667666 33334 8999999999998754 33222223334788999999999999865 2
Q ss_pred C----------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHH
Q 047992 665 I----------EPDS-SIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRL 708 (868)
Q Consensus 665 ~----------~p~~-~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~ 708 (868)
. .|+. .+...++......|+ .|.+..+++.++.|+++-...+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 1 2544 466566666666787 8899999999999999865544
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.62 E-value=2.1e-07 Score=106.87 Aligned_cols=159 Identities=11% Similarity=0.002 Sum_probs=121.0
Q ss_pred cCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCChHHHHHH
Q 047992 548 SGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN-RGTFLSIILAHSLAGMVDLGKKV 623 (868)
Q Consensus 548 ~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 623 (868)
.|++++|.+.|++.. +.+...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++...|+.++|..+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 367888888888765 34567888888999999999999999999988 5665 46777888888999999999999
Q ss_pred HHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHhcc
Q 047992 624 FCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIH---GNIDLAVLAIERLFDL 698 (868)
Q Consensus 624 ~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~---~~~~~a~~~~~~~~~l 698 (868)
|+...+.. ..+...+..+..+|.+.|++++|.+.+++. ...| +..+|..+..++... |+.+.|...++++++.
T Consensus 80 ~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99887742 223567888999999999999999999987 3444 466888899999999 9999999999999999
Q ss_pred CCCCchhHHHHH
Q 047992 699 EPGDVLIQRLIL 710 (868)
Q Consensus 699 ~p~~~~~~~~l~ 710 (868)
+|++...|.+|+
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999999888877
No 103
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.61 E-value=1.3e-07 Score=84.01 Aligned_cols=108 Identities=7% Similarity=-0.064 Sum_probs=68.9
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 047992 603 TFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACR 680 (868)
Q Consensus 603 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~ 680 (868)
.+......+.+.|++++|+..|+...+.. +.+...|..+..+|.+.|++++|++.+++. .+.|+ ...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 33444445555555555555555544421 112344555666666666666666666665 33343 457888888888
Q ss_pred hcCCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 047992 681 IHGNIDLAVLAIERLFDLEPGDVLIQRLILQI 712 (868)
Q Consensus 681 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 712 (868)
..|+++.|...++++++++|+|+.++..|+++
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 88888888888888888888888887777765
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.61 E-value=2.1e-07 Score=106.75 Aligned_cols=149 Identities=15% Similarity=0.032 Sum_probs=112.2
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHH
Q 047992 579 HGFWHAALDLFDQMKSFGLKPN-RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEA 656 (868)
Q Consensus 579 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA 656 (868)
.|+.++|++.|++..+ ..|+ ...+..+..++...|++++|..+|+...+ +.| +...|..+..+|.+.|++++|
T Consensus 2 ~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 4789999999999988 5675 47788888899999999999999999876 344 466788999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc---CCChhHHHHHHHHHh
Q 047992 657 MEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAIC---GKPEDALKVRKLERE 731 (868)
Q Consensus 657 ~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~---g~~~~a~~~~~~m~~ 731 (868)
.+.+++. ...| +...|..+..++...|+++.|...++++++++|+++.++..++.+|... |++++|.+..+...+
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999987 4444 4668999999999999999999999999999999999999999999999 888888886655543
Q ss_pred c
Q 047992 732 N 732 (868)
Q Consensus 732 ~ 732 (868)
.
T Consensus 157 ~ 157 (568)
T 2vsy_A 157 Q 157 (568)
T ss_dssp H
T ss_pred c
Confidence 3
No 105
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.61 E-value=1.6e-05 Score=88.46 Aligned_cols=204 Identities=13% Similarity=0.035 Sum_probs=125.9
Q ss_pred HHHHHHHhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHH-HHHHhcc
Q 047992 381 AAERVFDMIKD---KDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAV-DLFQRMG 456 (868)
Q Consensus 381 ~A~~vf~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~-~~f~~m~ 456 (868)
.+..+|++... .+...|-..+.-+.+.|+.++|..+|++.... |+...+.. .|+.....++.. .+.+...
T Consensus 197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~~~~l~~~~~ 270 (493)
T 2uy1_A 197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAVYGDLKRKYS 270 (493)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHHHHHHHHHHH
Confidence 34556665543 24556777777777888888888888888876 43332211 222221111111 1111110
Q ss_pred cCC-------CCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchh-chHHHHHHHHHHHH
Q 047992 457 KND-------KVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLV-ASNKVKEIHGCVLR 528 (868)
Q Consensus 457 ~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~~i~~~~~~ 528 (868)
... ........|...+....+.+..+.|..+|.+.... ..+...|......-...+ +.+.|+.+++..++
T Consensus 271 ~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~ 348 (493)
T 2uy1_A 271 MGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLL 348 (493)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred hhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 000 00111245667777777788899999999988221 123333332111111223 68999999999988
Q ss_pred hCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHH
Q 047992 529 RSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKS 594 (868)
Q Consensus 529 ~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 594 (868)
.. +.++..+...++...+.|+.+.|+.+|+++. +....|...+.--..+|+.+.+.++++++..
T Consensus 349 ~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 349 KH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 63 3456667778898899999999999999984 4566788888777788988888888888764
No 106
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.60 E-value=9.6e-08 Score=87.59 Aligned_cols=101 Identities=16% Similarity=0.047 Sum_probs=85.0
Q ss_pred CCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHH
Q 047992 632 QIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRL 708 (868)
Q Consensus 632 ~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~ 708 (868)
.+.|+ .+.+..+...+.+.|++++|.+.+++. ...| ++..|..|..++...|+++.|...++++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 34443 445667778888899999999999887 4445 56699999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCChhHHHHHHHHHhc
Q 047992 709 ILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 709 l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
++.+|...|++++|.+..+...+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999987766543
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.59 E-value=4.9e-07 Score=89.67 Aligned_cols=185 Identities=13% Similarity=0.009 Sum_probs=130.8
Q ss_pred HhHHHHHHHHhchhchHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-Cce---ecHHH
Q 047992 501 VTILSVLPACAYLVASNKVKEIHGCVLRRSLES--SLPVMNSLIDTYAKSGNIVYSRTIFDGMSS--K-DII---TWNSL 572 (868)
Q Consensus 501 ~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~-d~~---~~~~l 572 (868)
..+......+...|+++.|...+..+++..... ....+..+...|.+.|++++|...|++... | +.. .|..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 334445566788999999999999999853321 235778889999999999999999998753 2 222 45555
Q ss_pred HHHHHh------------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCC
Q 047992 573 ICGYVL------------------HGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQII 634 (868)
Q Consensus 573 i~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 634 (868)
...+.. .|+.++|+..|+++++ ..|+...... +......+...
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~-------------a~~~l~~~~~~---- 145 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTD-------------ATKRLVFLKDR---- 145 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHH-------------HHHHHHHHHHH----
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHH-------------HHHHHHHHHHH----
Confidence 555554 5789999999999998 5677532111 11111111110
Q ss_pred CChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh
Q 047992 635 PMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDS----SIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLI 705 (868)
Q Consensus 635 p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~----~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 705 (868)
.......+...|.+.|++++|...++++ ...|+. ..|..+..++...|+.+.|...++++....|++...
T Consensus 146 -~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 146 -LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp -HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred -HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 0112345678889999999999999887 223332 478888899999999999999999999999987543
No 108
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.59 E-value=2e-07 Score=91.16 Aligned_cols=156 Identities=8% Similarity=0.032 Sum_probs=113.6
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC---CCceecHH----------------HHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 047992 541 LIDTYAKSGNIVYSRTIFDGMSS---KDIITWNS----------------LICGYVLHGFWHAALDLFDQMKSFGLKPNR 601 (868)
Q Consensus 541 Li~~y~k~g~~~~A~~~f~~~~~---~d~~~~~~----------------li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 601 (868)
....+.+.|++++|...|++... .+...|.. +...|...|++++|+..|++.++ +.|+.
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~ 87 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KAPNN 87 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCC
Confidence 34455667777777777776542 23445555 88888999999999999999988 66754
Q ss_pred -HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCC--hHHHHHHHHhCCCCCCHH--HHHHH
Q 047992 602 -GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGK--LEEAMEFIEDMPIEPDSS--IWEAL 675 (868)
Q Consensus 602 -~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~--~~eA~~~i~~~~~~p~~~--~w~~l 675 (868)
..+..+..++...|+.++|...|+...+. .| +...|..+..+|...|. .+++...+++.. .|++. .|..+
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~ 163 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRD 163 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHH
Confidence 67778888889999999999999988873 34 35677788887766554 455666666653 34433 45555
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCC
Q 047992 676 LTACRIHGNIDLAVLAIERLFDLEPGD 702 (868)
Q Consensus 676 l~a~~~~~~~~~a~~~~~~~~~l~p~~ 702 (868)
..++...|+++.|...++++++++|++
T Consensus 164 g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 164 GLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 666777899999999999999999974
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.54 E-value=2.6e-06 Score=83.46 Aligned_cols=161 Identities=9% Similarity=-0.055 Sum_probs=117.0
Q ss_pred CCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC----ChHHHHHHHHHhhhhcCCCCChhH
Q 047992 564 KDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAG----MVDLGKKVFCSITECYQIIPMIEH 639 (868)
Q Consensus 564 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m~~~~~~~p~~~~ 639 (868)
.++.++..+...|...|+.++|++.|++..+.| +...+..+...+.. | +.++|..+|+...+. -+...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 455566666667777777777777777777654 34455555555665 5 777888888776542 23445
Q ss_pred HHHHHHhhhh----cCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCchhHH
Q 047992 640 YSAMIDLYGR----SGKLEEAMEFIEDM-PIEPD---SSIWEALLTACRI----HGNIDLAVLAIERLFDLEPGDVLIQR 707 (868)
Q Consensus 640 y~~lvd~l~r----~g~~~eA~~~i~~~-~~~p~---~~~w~~ll~a~~~----~~~~~~a~~~~~~~~~l~p~~~~~~~ 707 (868)
+..+..+|.. .+++++|.+++++. ...|. +..+..|...+.. .+|.+.|...++++.++ |.++.++.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 6666666765 78889999998887 34442 6678888888877 78999999999999998 77888999
Q ss_pred HHHHHHhhc-C-----CChhHHHHHHHHHhcC
Q 047992 708 LILQIYAIC-G-----KPEDALKVRKLERENT 733 (868)
Q Consensus 708 ~l~~~y~~~-g-----~~~~a~~~~~~m~~~~ 733 (868)
.|+.+|... | ++++|.+..+...+.|
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 999999764 3 7889988877766655
No 110
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.53 E-value=3.8e-06 Score=86.48 Aligned_cols=208 Identities=13% Similarity=0.095 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcC--CHHHHHHHHhcCC---CCCceecHHHHHHH----Hhc---CChHH
Q 047992 518 KVKEIHGCVLRRSLES-SLPVMNSLIDTYAKSG--NIVYSRTIFDGMS---SKDIITWNSLICGY----VLH---GFWHA 584 (868)
Q Consensus 518 ~~~~i~~~~~~~~~~~-~~~~~~~Li~~y~k~g--~~~~A~~~f~~~~---~~d~~~~~~li~~~----~~~---g~~~~ 584 (868)
.+.+....++. +.| +..+++.-...+...| +++++.+.++.+. +++...|+--...+ ... +++++
T Consensus 51 ~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 51 RALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 34444444444 333 4445666666666667 7888888887654 45666777665555 444 67888
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCChH--HHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCC------hHH
Q 047992 585 ALDLFDQMKSFGLKP-NRGTFLSIILAHSLAGMVD--LGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGK------LEE 655 (868)
Q Consensus 585 A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~--~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~------~~e 655 (868)
++++++++.+ ..| |...|..-.....+.|..+ +++.+++.+.+.. .-+...|.--..++.+.|+ +++
T Consensus 129 EL~~~~~~l~--~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 129 EFDILEAMLS--SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 8888888887 455 4466666666667777777 8888888887632 1233334444445555555 788
Q ss_pred HHHHHHhC-CC-CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhccC---CCCchhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 656 AMEFIEDM-PI-EPDSSIWEALLTACRIHGN-IDLAVLAIERLFDLE---PGDVLIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 656 A~~~i~~~-~~-~p~~~~w~~ll~a~~~~~~-~~~a~~~~~~~~~l~---p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
++++++++ .. +-|...|+.+.......|+ .+.....++++++++ |.++.++..|+.+|...|+.++|.++.+.+
T Consensus 205 El~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 205 ELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 88888776 22 3467788888888777765 444666777777776 788888888888888888888888888777
Q ss_pred Hh
Q 047992 730 RE 731 (868)
Q Consensus 730 ~~ 731 (868)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.52 E-value=1.2e-06 Score=91.43 Aligned_cols=221 Identities=9% Similarity=-0.016 Sum_probs=149.5
Q ss_pred hcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 047992 477 QLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRT 556 (868)
Q Consensus 477 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~ 556 (868)
..|++++|.+++++..... +.. + +...++++.+...+. .....|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~---------------~a~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYA---------------KAAVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHH---------------HHHHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHH---------------HHHHHHHHcCCHHHHHH
Confidence 3567788888888765321 110 0 011244454444433 34567888899999988
Q ss_pred HHhcCCC-----CC----ceecHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHhhccCChHHHHH
Q 047992 557 IFDGMSS-----KD----IITWNSLICGYVLHGFWHAALDLFDQMKSFG---LKPN--RGTFLSIILAHSLAGMVDLGKK 622 (868)
Q Consensus 557 ~f~~~~~-----~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~ 622 (868)
.|.+... .+ ..+|+.+...|...|++++|++.|++.++.- -.|. ..++..+...+.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8876542 12 3478888899999999999999999876521 1222 2466777778888 99999999
Q ss_pred HHHHhhhhcCCCCC----hhHHHHHHHhhhhcCChHHHHHHHHhC----CCCCC---H-HHHHHHHHHHHhcCCHHHHHH
Q 047992 623 VFCSITECYQIIPM----IEHYSAMIDLYGRSGKLEEAMEFIEDM----PIEPD---S-SIWEALLTACRIHGNIDLAVL 690 (868)
Q Consensus 623 ~~~~m~~~~~~~p~----~~~y~~lvd~l~r~g~~~eA~~~i~~~----~~~p~---~-~~w~~ll~a~~~~~~~~~a~~ 690 (868)
+|+...+.+.-..+ ...+..+..+|.+.|++++|.+.+++. |-.++ . ..|..+...+...|+++.|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99987764322111 456788899999999999999999886 21222 1 255666666777899999999
Q ss_pred HHHHHhccCCCCchh-----HHHHHHHHhhcCCChhHHHH
Q 047992 691 AIERLFDLEPGDVLI-----QRLILQIYAICGKPEDALKV 725 (868)
Q Consensus 691 ~~~~~~~l~p~~~~~-----~~~l~~~y~~~g~~~~a~~~ 725 (868)
.+++++ ++|+.... ...+...| ..|+.+++.++
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999 99976543 33444445 45665555443
No 112
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.52 E-value=4.2e-06 Score=93.25 Aligned_cols=390 Identities=10% Similarity=0.017 Sum_probs=206.6
Q ss_pred cC-ChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCC-hhHHH
Q 047992 236 IG-ENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGR-TSQAL 313 (868)
Q Consensus 236 ~g-~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~ 313 (868)
.| +++.|..+|+++... -|. |+.+.+..+|++.... .|++..|...+.-..+.+. .+...
T Consensus 7 ~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp -----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTH
T ss_pred cCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHH
Confidence 45 377777777777642 121 8899999999998874 4688888888887777663 35566
Q ss_pred HHHHHHHhC-CccC-CcccHHHHHHHHh----chhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHH
Q 047992 314 DLFKEMSFV-GVMP-NGVTITSAISACT----DLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFD 387 (868)
Q Consensus 314 ~l~~~m~~~-g~~p-d~~t~~~ll~a~~----~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~ 387 (868)
.+|+..... |..| +...|...+..+. ..++.+.++.++..++......-..+|......-.. .....+..+..
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~-~~~~~~~~~~~ 147 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELE-LNKITGKKIVG 147 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-HCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHH-hccccHHHHHH
Confidence 677766542 4333 3445555555443 246677788888888763221111122222111111 11122222221
Q ss_pred hcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcC-------CHHHHHHHHHhcccCCC
Q 047992 388 MIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNG-------NEDEAVDLFQRMGKNDK 460 (868)
Q Consensus 388 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g-------~~~~A~~~f~~m~~~~~ 460 (868)
.. . ..+..|..+++.+...--..+...|...++.-...+ ..+.+..+|+++....
T Consensus 148 ~~---------------~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~- 209 (493)
T 2uy1_A 148 DT---------------L--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF- 209 (493)
T ss_dssp HH---------------H--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-
T ss_pred HH---------------h--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-
Confidence 11 0 122233333333321000001123333333211110 0234556666665532
Q ss_pred CCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHH
Q 047992 461 VKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNS 540 (868)
Q Consensus 461 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 540 (868)
+.+...|...+.-+.+.|+.++|..+|++.... |....+.. +++.....+ +++..+.+
T Consensus 210 -p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~---~~~~~l~~------------ 267 (493)
T 2uy1_A 210 -YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEE---AVYGDLKR------------ 267 (493)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCT---HHHHHHHH------------
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchh---HHHHHHHH------------
Confidence 444566777777777777777777777777654 44332211 111110000 11111111
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hhccCChHH
Q 047992 541 LIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILA-HSLAGMVDL 619 (868)
Q Consensus 541 Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~ 619 (868)
.|... ..+.+.. .........|...+.-+.++|..+.|.++|++. +. ..++...|...... +...++++.
T Consensus 268 ---~~~~~-~~~~~~~---~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ 338 (493)
T 2uy1_A 268 ---KYSMG-EAESAEK---VFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRAT 338 (493)
T ss_dssp ---HTC--------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHH
T ss_pred ---HHHhh-ccchhhh---hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHH
Confidence 10000 0000000 000011235666666666677788888888888 32 11233334322111 122347999
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 047992 620 GKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFD 697 (868)
Q Consensus 620 a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~ 697 (868)
|+.+|+...+.++-.| +.+...++.+.+.|..+.|..++++++ ....+|...+.--..+|+.+.+..++++.++
T Consensus 339 ar~ife~al~~~~~~~--~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 339 PYNIFSSGLLKHPDST--LLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999888765544 346667888889999999999999983 3567899999988899999999988888764
No 113
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.48 E-value=6.8e-07 Score=84.70 Aligned_cols=154 Identities=11% Similarity=0.074 Sum_probs=116.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--hh
Q 047992 538 MNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILA--HS 612 (868)
Q Consensus 538 ~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a--~~ 612 (868)
...+...+.+.|++++|...|++.. +.+...|..+...|...|++++|+..|++... ..|+.. +..++.. +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~-~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNS-YKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChH-HHHHHHHHHHH
Confidence 4456677888999999999999876 45677899999999999999999999998876 445432 2222221 12
Q ss_pred ccCChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHHH
Q 047992 613 LAGMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD---SSIWEALLTACRIHGNIDL 687 (868)
Q Consensus 613 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~---~~~w~~ll~a~~~~~~~~~ 687 (868)
..+...++...|+...+ ..|+ ...+..+..+|.+.|++++|.+.++++ ...|+ ...|..|...+...|+.+.
T Consensus 86 ~~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 86 QQAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred hhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 22333457888887776 3453 677888899999999999999999887 44554 5688999999999999999
Q ss_pred HHHHHHHHhc
Q 047992 688 AVLAIERLFD 697 (868)
Q Consensus 688 a~~~~~~~~~ 697 (868)
|...+++++.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 114
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.48 E-value=2.1e-07 Score=95.88 Aligned_cols=191 Identities=12% Similarity=-0.034 Sum_probs=135.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIIL 609 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~ 609 (868)
+...+..+...|.+.|++++|...|++.. +.+...|..+...|...|++++|++.|++.++ +.|+. ..+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 44566778888889999999999998654 45777888999999999999999999999887 56754 67777888
Q ss_pred HhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047992 610 AHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAV 689 (868)
Q Consensus 610 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~ 689 (868)
++...|++++|..+|+...+...-.|. .+...+....+.++..+... .......++..++..+ +.. ..|+.+.|.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRL--NFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAEREREL 155 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTC--CCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchh--hHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHH
Confidence 899999999999999887663221111 11112222222222222222 2333344555554444 333 369999999
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHhhc-CCChhHHHHHHHHHh
Q 047992 690 LAIERLFDLEPGDVLIQRLILQIYAIC-GKPEDALKVRKLERE 731 (868)
Q Consensus 690 ~~~~~~~~l~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~ 731 (868)
..++++++++|++......+..++... +++++|.++.....+
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999988888888888887 788999988876644
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.47 E-value=1.6e-06 Score=84.84 Aligned_cols=123 Identities=11% Similarity=-0.051 Sum_probs=97.0
Q ss_pred HHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 047992 605 LSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIH 682 (868)
Q Consensus 605 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~ 682 (868)
..+...+...|++++|...|+.. +.|+...|..+..++.+.|++++|.+.+++. ...| +..+|..+..++...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 34444556667777777777655 2456667777777888888888888887776 2333 456888899999999
Q ss_pred CCHHHHHHHHHHHhccCCCCc----------------hhHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 683 GNIDLAVLAIERLFDLEPGDV----------------LIQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 683 ~~~~~a~~~~~~~~~l~p~~~----------------~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
|+++.|...+++++++.|++. .++..++.+|...|++++|.+..+...+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 999999999999999999888 89999999999999999999988776543
No 116
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.47 E-value=7e-07 Score=92.26 Aligned_cols=160 Identities=8% Similarity=-0.079 Sum_probs=98.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHH
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTF-LSIIL 609 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~ 609 (868)
+......+...+.+.|++++|...|++.. +.+...+..+...|.+.|++++|++.|++... ..|+.... .....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHHHH
Confidence 44445556666666777777777776543 34555666666677777777777777776655 34544322 22222
Q ss_pred HhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCH
Q 047992 610 AHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD---SSIWEALLTACRIHGNI 685 (868)
Q Consensus 610 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~---~~~w~~ll~a~~~~~~~ 685 (868)
.+...|..++|...|+...... +.+.+.+..+..+|...|++++|.+.++++ ...|+ ...|..|+..+...|+.
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 3455566666666666665532 223455666777777777777777777665 22333 45777777777777777
Q ss_pred HHHHHHHHHHhc
Q 047992 686 DLAVLAIERLFD 697 (868)
Q Consensus 686 ~~a~~~~~~~~~ 697 (868)
+.|...+++.+.
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 777777776653
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.46 E-value=2.2e-06 Score=83.80 Aligned_cols=146 Identities=9% Similarity=-0.033 Sum_probs=107.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCC
Q 047992 538 MNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN-RGTFLSIILAHSLAGM 616 (868)
Q Consensus 538 ~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 616 (868)
+..+...|.+.|++++|...|++..+++...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHccc
Confidence 455677788899999999999988888888888899999999999999999999887 4454 4666777777788888
Q ss_pred hHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047992 617 VDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDS-SIWEALLTACRIHGNIDLAVLAIERL 695 (868)
Q Consensus 617 ~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~-~~w~~ll~a~~~~~~~~~a~~~~~~~ 695 (868)
.++|...|+...+...-.+... +...| ....|+. .+|..+..++...|+++.|...++++
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8888888887766322222111 00011 0233443 47788888888899999999999999
Q ss_pred hccCCCCch
Q 047992 696 FDLEPGDVL 704 (868)
Q Consensus 696 ~~l~p~~~~ 704 (868)
++++|++..
T Consensus 148 l~~~p~~~~ 156 (213)
T 1hh8_A 148 TSMKSEPRH 156 (213)
T ss_dssp HTTCCSGGG
T ss_pred HHcCccccc
Confidence 999997643
No 118
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.45 E-value=3.3e-07 Score=84.00 Aligned_cols=95 Identities=17% Similarity=0.128 Sum_probs=77.8
Q ss_pred hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047992 637 IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYA 714 (868)
Q Consensus 637 ~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 714 (868)
...+..+...+.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...++++++++|+++.++..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 345566677788888888888888876 3344 56688888888899999999999999999999999999999999999
Q ss_pred hcCCChhHHHHHHHHHh
Q 047992 715 ICGKPEDALKVRKLERE 731 (868)
Q Consensus 715 ~~g~~~~a~~~~~~m~~ 731 (868)
..|++++|.+..+...+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999987765543
No 119
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.45 E-value=6.2e-08 Score=102.69 Aligned_cols=142 Identities=11% Similarity=0.039 Sum_probs=101.9
Q ss_pred ceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 047992 566 IITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMID 645 (868)
Q Consensus 566 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd 645 (868)
...|+.+...|.+.|++++|+..|++.++ +.|+...+ ..+++...-. + ....|..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~-----------~~~~~~~~~~-~--------~~~~~~nla~ 204 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSF-----------SNEEAQKAQA-L--------RLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCC-----------CSHHHHHHHH-H--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccC-----------ChHHHHHHHH-H--------HHHHHHHHHH
Confidence 44566666666666666666666666665 33432110 0011110000 0 1356777888
Q ss_pred hhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHH
Q 047992 646 LYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDAL 723 (868)
Q Consensus 646 ~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 723 (868)
+|.+.|++++|++.++++ ...| +..+|..+..++...|+++.|...++++++++|+++.++..|+.+|...|++++|.
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999998887 3444 56689999999999999999999999999999999999999999999999999994
Q ss_pred H-HHHHH
Q 047992 724 K-VRKLE 729 (868)
Q Consensus 724 ~-~~~~m 729 (868)
+ ..+.|
T Consensus 285 ~~~~~~~ 291 (336)
T 1p5q_A 285 KKLYANM 291 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4 44444
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.43 E-value=1.1e-06 Score=78.00 Aligned_cols=99 Identities=10% Similarity=0.019 Sum_probs=86.3
Q ss_pred CCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHH
Q 047992 633 IIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLI 709 (868)
Q Consensus 633 ~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l 709 (868)
+.|+ .+.+.-....|.+.|++++|++.+++. ...| +..+|..+..++...|+++.|...++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4454 345667788999999999999999987 4445 566999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCChhHHHHHHHHHh
Q 047992 710 LQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 710 ~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
+.+|...|++++|.+..+...+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999998776543
No 121
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.43 E-value=2.1e-06 Score=75.26 Aligned_cols=111 Identities=17% Similarity=0.213 Sum_probs=74.5
Q ss_pred HHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhc
Q 047992 605 LSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PI-EPDSSIWEALLTACRIH 682 (868)
Q Consensus 605 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~-~p~~~~w~~ll~a~~~~ 682 (868)
..+...+...|++++|..+|+.+.+.. ..+...+..+..++.+.|++++|.++++++ .. +.+..+|..+...+...
T Consensus 13 ~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 13 YNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 333344444444444444444443321 112334555666666667777777666665 22 23566888888899999
Q ss_pred CCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 047992 683 GNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICG 717 (868)
Q Consensus 683 ~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 717 (868)
|+++.|...++++++++|+++..+..++.++...|
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 91 GDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999998887654
No 122
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.42 E-value=1.6e-06 Score=76.86 Aligned_cols=116 Identities=11% Similarity=0.030 Sum_probs=82.0
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 047992 603 TFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACR 680 (868)
Q Consensus 603 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~ 680 (868)
.+..+...+...|++++|..+|+...+.. ..+...+..+..++...|++++|.+.+++. ...| +..+|..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 33444444455555555555555544421 123445566666677777777777777665 2233 4568888888999
Q ss_pred hcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCCh
Q 047992 681 IHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPE 720 (868)
Q Consensus 681 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 720 (868)
..|+++.|...++++++++|+++..+..++.+|...|+++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999988864
No 123
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.41 E-value=6.8e-07 Score=89.76 Aligned_cols=197 Identities=8% Similarity=-0.028 Sum_probs=119.6
Q ss_pred hcCCHHHHHHHHhcCC---CCCceecHHH-------HHHHHhcCChHHHHHHHHHHHHCCCCCCHH--------------
Q 047992 547 KSGNIVYSRTIFDGMS---SKDIITWNSL-------ICGYVLHGFWHAALDLFDQMKSFGLKPNRG-------------- 602 (868)
Q Consensus 547 k~g~~~~A~~~f~~~~---~~d~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------------- 602 (868)
..++.+.|.+.|.+.. +.....|+.+ ...+...++..+++..+.+-.. +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 3566677777776554 3344566666 3445555555555554444333 444321
Q ss_pred --------HHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCH----H
Q 047992 603 --------TFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDS----S 670 (868)
Q Consensus 603 --------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~----~ 670 (868)
....+..++...|++++|.+.|..+... .|+......+..++.+.|++++|+..++.....|++ .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1122344566677777777777766542 232223444555777777788877777765333322 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccC--CC-CchhHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCCCcccEEEEcC
Q 047992 671 IWEALLTACRIHGNIDLAVLAIERLFDLE--PG-DVLIQRLILQIYAICGKPEDALKVRKLERENTRRNSFGQCWIEVKN 747 (868)
Q Consensus 671 ~w~~ll~a~~~~~~~~~a~~~~~~~~~l~--p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~ 747 (868)
++..|..++...|+.+.|+..++++.+-. |. .+.....++.++...|+.++|..+.+.+...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--------------- 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--------------- 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------------
Confidence 66667777777788888888887777533 44 4456677777788888888887777766543
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHhCCCc
Q 047992 748 LVYTFVTGGWSESYSDLLYSWLQNVPEN 775 (868)
Q Consensus 748 ~~~~f~~~d~~hp~~~~i~~~l~~~g~~ 775 (868)
+|. .++...|....|.
T Consensus 238 -----------~P~-~~~~~aL~~~~~~ 253 (282)
T 4f3v_A 238 -----------HPE-PKVAAALKDPSYR 253 (282)
T ss_dssp -----------SCC-HHHHHHHHCTTCC
T ss_pred -----------CCc-HHHHHHHhCCCCC
Confidence 466 6777777766665
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.41 E-value=3.3e-06 Score=87.53 Aligned_cols=157 Identities=5% Similarity=-0.074 Sum_probs=112.0
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCC--CC--hh
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-----GTFLSIILAHSLAGMVDLGKKVFCSITECYQII--PM--IE 638 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~--p~--~~ 638 (868)
.+...+..+...|++++|++.+++..+.....+. ..+..+...+...|+.++|..+|+...+...-. +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566777888888888888877764221111 122334445667788888888888766432211 11 34
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------c
Q 047992 639 HYSAMIDLYGRSGKLEEAMEFIEDMP----IEPD-----SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGD------V 703 (868)
Q Consensus 639 ~y~~lvd~l~r~g~~~eA~~~i~~~~----~~p~-----~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~------~ 703 (868)
.|..+..+|...|++++|.+.++++- ..|+ ..++..+...+...|+++.|...+++++++.++. +
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 67788888889999999888887751 1222 2488888999999999999999999999876431 5
Q ss_pred hhHHHHHHHHhhcCCChhH-HH
Q 047992 704 LIQRLILQIYAICGKPEDA-LK 724 (868)
Q Consensus 704 ~~~~~l~~~y~~~g~~~~a-~~ 724 (868)
..|..++++|...|++++| ..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~ 258 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIED 258 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHH
Confidence 6789999999999999999 66
No 125
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.41 E-value=2.2e-06 Score=76.31 Aligned_cols=116 Identities=12% Similarity=0.052 Sum_probs=80.0
Q ss_pred ceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 047992 566 IITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMID 645 (868)
Q Consensus 566 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd 645 (868)
...|..+...+...|++++|++.|++..+ ..|+ +...+..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~-----------------------------------~~~~~~~la~ 58 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPK-----------------------------------DAKLYSNRAA 58 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTT-----------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCC-----------------------------------cHHHHHHHHH
Confidence 34555566666666666666666666655 3332 2233444555
Q ss_pred hhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 047992 646 LYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGK 718 (868)
Q Consensus 646 ~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 718 (868)
++...|++++|.+.++++ ...| +..+|..+..++...|+++.|...++++++++|++...+..++.+|...|+
T Consensus 59 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 59 CYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 555556666666555554 2223 456888888889999999999999999999999999999999999987764
No 126
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.40 E-value=8.9e-07 Score=92.54 Aligned_cols=197 Identities=8% Similarity=-0.105 Sum_probs=148.5
Q ss_pred chhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHH
Q 047992 512 YLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQ 591 (868)
Q Consensus 512 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 591 (868)
..|.++.+.++.....+..-. . .+...|+++.|...|.+. ...|...|++++|++.|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 356777888888777663211 1 111158899998888764 5678899999999999998
Q ss_pred HHHC----CCCCC-HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCC--C--ChhHHHHHHHhhhhcCChHHHHHHHHh
Q 047992 592 MKSF----GLKPN-RGTFLSIILAHSLAGMVDLGKKVFCSITECYQII--P--MIEHYSAMIDLYGRSGKLEEAMEFIED 662 (868)
Q Consensus 592 m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~--p--~~~~y~~lvd~l~r~g~~~eA~~~i~~ 662 (868)
..+. |-.+. ..+|..+...+...|++++|+.+|+...+.+.-. | ....+..+..+|.+ |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 8762 11111 2477788888999999999999999876643221 1 24577888899988 999999999988
Q ss_pred C----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc------hhHHHHHHHHhhcCCChhHHHHHHH
Q 047992 663 M----PIEPD----SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDV------LIQRLILQIYAICGKPEDALKVRKL 728 (868)
Q Consensus 663 ~----~~~p~----~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~------~~~~~l~~~y~~~g~~~~a~~~~~~ 728 (868)
. +...+ ..++..+...+...|+++.|...+++++++.|++. .++..++.+|...|++++|.+..+.
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 21112 34788888999999999999999999999987654 2677788899999999999998775
Q ss_pred HH
Q 047992 729 ER 730 (868)
Q Consensus 729 m~ 730 (868)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 53
No 127
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.39 E-value=8.9e-07 Score=88.91 Aligned_cols=136 Identities=14% Similarity=-0.016 Sum_probs=105.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC--hhHHHHHHHhhhh
Q 047992 572 LICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM--IEHYSAMIDLYGR 649 (868)
Q Consensus 572 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lvd~l~r 649 (868)
....+...|++++|.++|+.+.. ..|+......+...+.+.|++++++.+|+..... . .|. ...+..+..++.+
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~--~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPV--AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCC--TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHHH
Confidence 56677888999999999988876 4576655555566788899999999999855431 1 221 2356777889999
Q ss_pred cCChHHHHHHHHhC---CCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 047992 650 SGKLEEAMEFIEDM---PIEPD-S-SIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQI 712 (868)
Q Consensus 650 ~g~~~eA~~~i~~~---~~~p~-~-~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 712 (868)
.|++++|++.+++. +.+|. . ..+..+..+++..|+.+.|...++++++.+|+ +.++..|.+.
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~ 250 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDP 250 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCC
Confidence 99999999999987 33254 3 37788888899999999999999999999998 8777777654
No 128
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.38 E-value=1.5e-05 Score=81.90 Aligned_cols=160 Identities=10% Similarity=0.017 Sum_probs=123.4
Q ss_pred CCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChH--HHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCC------
Q 047992 549 GNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWH--AALDLFDQMKSFGLKP-NRGTFLSIILAHSLAGM------ 616 (868)
Q Consensus 549 g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~------ 616 (868)
++++++...++++. ++|..+|+--.-.+.+.|.++ ++++.++++++ ..| |...|..-.....+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~--~d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID--TDLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccchhhh
Confidence 67888888888764 677888888888888888888 99999999998 455 45667666666666665
Q ss_pred hHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCCh-HHHHHHHHhC-CC----CCCHHHHHHHHHHHHhcCCHHHHHH
Q 047992 617 VDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKL-EEAMEFIEDM-PI----EPDSSIWEALLTACRIHGNIDLAVL 690 (868)
Q Consensus 617 ~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~-~eA~~~i~~~-~~----~p~~~~w~~ll~a~~~~~~~~~a~~ 690 (868)
+++++++++.+.... .-+...|.-...++.+.|+. +++.++.++. .. ..++..|..|...+...|+.+.|.+
T Consensus 202 ~~eEl~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 899999999888742 23344566677778888874 4466677776 22 2466789999999999999999999
Q ss_pred HHHHHhc-cCCCCchhHHHHHHH
Q 047992 691 AIERLFD-LEPGDVLIQRLILQI 712 (868)
Q Consensus 691 ~~~~~~~-l~p~~~~~~~~l~~~ 712 (868)
+++++.+ +||-...+|...++.
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHhccChHHHHHHHHHHhh
Confidence 9999996 899998888876654
No 129
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.38 E-value=2.8e-05 Score=80.38 Aligned_cols=158 Identities=6% Similarity=-0.077 Sum_probs=113.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC----hhHHHH
Q 047992 572 LICGYVLHGFWHAALDLFDQMKSFG-LKPNRG----TFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM----IEHYSA 642 (868)
Q Consensus 572 li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~ 642 (868)
.+..+...|++++|++++++..+.. ..|+.. .+..+...+...|+.++|+.+|+...+...-.++ ...|..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566777888888888888877632 122211 2223555666777888888888887763222233 235788
Q ss_pred HHHhhhhcCChHHHHHHHHhCC-------C-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------chhHH
Q 047992 643 MIDLYGRSGKLEEAMEFIEDMP-------I-EPDS-SIWEALLTACRIHGNIDLAVLAIERLFDLEPGD------VLIQR 707 (868)
Q Consensus 643 lvd~l~r~g~~~eA~~~i~~~~-------~-~p~~-~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~------~~~~~ 707 (868)
+..+|.+.|++++|.+.++++- . .|.. .++..+...+...|+++.|...+++++++.|+. +..|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8888888899888888887761 1 1222 278889999999999999999999999887654 67889
Q ss_pred HHHHHHhhcCC-ChhHHHHHHHH
Q 047992 708 LILQIYAICGK-PEDALKVRKLE 729 (868)
Q Consensus 708 ~l~~~y~~~g~-~~~a~~~~~~m 729 (868)
.++.+|...|+ +++|.+..+..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHH
Confidence 99999999996 49998865543
No 130
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.34 E-value=1.8e-06 Score=78.30 Aligned_cols=93 Identities=12% Similarity=0.012 Sum_probs=70.0
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 047992 639 HYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAIC 716 (868)
Q Consensus 639 ~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 716 (868)
.+..+...+.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...++++++++|+++..+..++.+|...
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 3445566677777778777777766 3334 4557888888888888888888888888888888888888888888888
Q ss_pred CCChhHHHHHHHHHh
Q 047992 717 GKPEDALKVRKLERE 731 (868)
Q Consensus 717 g~~~~a~~~~~~m~~ 731 (868)
|++++|.+..+...+
T Consensus 100 g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 100 GDLDGAESGFYSARA 114 (142)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888887665543
No 131
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.34 E-value=3.6e-06 Score=78.35 Aligned_cols=119 Identities=13% Similarity=-0.028 Sum_probs=79.9
Q ss_pred HhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 047992 610 AHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDL 687 (868)
Q Consensus 610 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~ 687 (868)
.+...|++++|..+|+...+.. +.+...+..+..++.+.|++++|.+.+++. ...| +..+|..+..++...|+++.
T Consensus 22 ~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~ 99 (166)
T 1a17_A 22 DYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 99 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHH
Confidence 3344444444444444443321 112344555566666666666666666655 2223 45688888888999999999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHH--HHhhcCCChhHHHHHHHHH
Q 047992 688 AVLAIERLFDLEPGDVLIQRLILQ--IYAICGKPEDALKVRKLER 730 (868)
Q Consensus 688 a~~~~~~~~~l~p~~~~~~~~l~~--~y~~~g~~~~a~~~~~~m~ 730 (868)
|...++++++++|++...+..++. .+...|++++|.+..+...
T Consensus 100 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 100 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999999988855544 4888899999998766543
No 132
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.32 E-value=2.9e-06 Score=82.83 Aligned_cols=181 Identities=12% Similarity=0.065 Sum_probs=123.3
Q ss_pred hhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 047992 470 SLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSG 549 (868)
Q Consensus 470 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g 549 (868)
.....+.+.|++++|+..|++... ..|+......... .. ........+.+.+...|.+.|
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~-~~-----------------~~~~~~~~~~~~lg~~~~~~g 68 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTN-VD-----------------KNSEISSKLATELALAYKKNR 68 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHH-SC-----------------TTSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhh-hc-----------------chhhhhHHHHHHHHHHHHHCC
Confidence 345567789999999999998875 3454332111110 00 000112334456889999999
Q ss_pred CHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCC--hHHHHHH
Q 047992 550 NIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGM--VDLGKKV 623 (868)
Q Consensus 550 ~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~--~~~a~~~ 623 (868)
++++|...|++.. +.+...|..+...|...|++++|++.|++.++ +.|+. .++..+..++...|. .+++...
T Consensus 69 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 146 (208)
T 3urz_A 69 NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLETD 146 (208)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999764 56788999999999999999999999999999 67865 666677666655543 3344445
Q ss_pred HHHhhhhcCCCCChhH--HHHHHHhhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 047992 624 FCSITECYQIIPMIEH--YSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSSIWEALLT 677 (868)
Q Consensus 624 ~~~m~~~~~~~p~~~~--y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~~w~~ll~ 677 (868)
|.... .|+... +..+...+...|++++|.+.+++. ...|+......|..
T Consensus 147 ~~~~~-----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 147 YKKLS-----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HC--------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHh-----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 54432 344332 333455666789999999999987 78898776665544
No 133
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.29 E-value=1.3e-06 Score=76.79 Aligned_cols=92 Identities=17% Similarity=0.107 Sum_probs=80.9
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 047992 639 HYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAIC 716 (868)
Q Consensus 639 ~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 716 (868)
.+..+...+.+.|++++|...+++. ...| +...|..+..++...|+.+.|+..++++++++|+++.++..|+.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556677888999999999999987 4445 5668998999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHH
Q 047992 717 GKPEDALKVRKLER 730 (868)
Q Consensus 717 g~~~~a~~~~~~m~ 730 (868)
|++++|....+...
T Consensus 99 g~~~~A~~~~~~al 112 (121)
T 1hxi_A 99 HNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999877654
No 134
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.29 E-value=7.8e-07 Score=81.44 Aligned_cols=112 Identities=9% Similarity=-0.008 Sum_probs=75.1
Q ss_pred CCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 047992 597 LKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWE 673 (868)
Q Consensus 597 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~ 673 (868)
+.|+. ..+..+...+...|++++|...|+...... +.+...|..+..+|.+.|++++|.+.+++. ...| ++..|.
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 93 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF 93 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 34433 344444555556666666666666555421 123445566667777777777777777766 3334 455788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 047992 674 ALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLIL 710 (868)
Q Consensus 674 ~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 710 (868)
.+..++...|+++.|+..++++++++|+++.......
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 130 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQELIANXPEFXELST 130 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHH
Confidence 8888899999999999999999999999887655443
No 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.27 E-value=1.2e-06 Score=80.11 Aligned_cols=95 Identities=8% Similarity=-0.038 Sum_probs=58.7
Q ss_pred HHHHHhhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 047992 606 SIILAHSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIH 682 (868)
Q Consensus 606 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~ 682 (868)
.+..++...|++++|..+|+...+. .| +...|..+..+|.+.|++++|.+.++++ ...| ++..|..+..++...
T Consensus 41 ~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~l 117 (151)
T 3gyz_A 41 SYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRL 117 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 3333444444444444444444331 12 2334555566666666666666666665 2334 345788888888888
Q ss_pred CCHHHHHHHHHHHhccCCCCc
Q 047992 683 GNIDLAVLAIERLFDLEPGDV 703 (868)
Q Consensus 683 ~~~~~a~~~~~~~~~l~p~~~ 703 (868)
|+++.|...+++++++.|+++
T Consensus 118 g~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 118 KAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp TCHHHHHHHHHHHHHHCCCHH
T ss_pred CCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999988753
No 136
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.26 E-value=4.2e-06 Score=73.96 Aligned_cols=92 Identities=13% Similarity=0.021 Sum_probs=67.8
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 047992 639 HYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAIC 716 (868)
Q Consensus 639 ~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 716 (868)
.+..+...+.+.|++++|.+.+++. ...| +..+|..+..++...|+++.|...++++++++|+++.+|..++.+|...
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 3555566677777777777777765 3333 4557777777778888888888888888888888888888888888888
Q ss_pred CCChhHHHHHHHHH
Q 047992 717 GKPEDALKVRKLER 730 (868)
Q Consensus 717 g~~~~a~~~~~~m~ 730 (868)
|++++|.+..+...
T Consensus 86 ~~~~~A~~~~~~al 99 (126)
T 3upv_A 86 KEYASALETLDAAR 99 (126)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHH
Confidence 88888887665543
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.26 E-value=1.6e-06 Score=82.09 Aligned_cols=128 Identities=11% Similarity=0.112 Sum_probs=69.4
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHh-hhhcCCh
Q 047992 576 YVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDL-YGRSGKL 653 (868)
Q Consensus 576 ~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~-l~r~g~~ 653 (868)
+...|++++|++.|++..+ ..| +...+..+...+...|++++|..+|+...+..+ .+...+..+..+ +.+.|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG--ENAELYAALATVLYYQASQH 95 (177)
T ss_dssp CC-----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTC
T ss_pred hhhccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhcCCc
Confidence 3455667777777777666 334 335555666666666777777776666655322 123345555555 4455665
Q ss_pred --HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHH
Q 047992 654 --EEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQR 707 (868)
Q Consensus 654 --~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~ 707 (868)
++|.+.++++ ...| +..+|..+...+...|+++.|...++++++++|+++....
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 6666666554 2223 2345555555566666666666666666666666554433
No 138
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.24 E-value=4.3e-06 Score=79.08 Aligned_cols=121 Identities=7% Similarity=0.069 Sum_probs=88.6
Q ss_pred hhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCH--
Q 047992 611 HSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTA-CRIHGNI-- 685 (868)
Q Consensus 611 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a-~~~~~~~-- 685 (868)
+...|++++|...|+...+... .+...|..+..+|...|++++|.+.++++ ...| +..+|..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANP--QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCC--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 3456788888888887776432 34567788888888888888888888876 2333 45577777777 6677887
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcC
Q 047992 686 DLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENT 733 (868)
Q Consensus 686 ~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 733 (868)
+.|...++++++++|+++.++..++.+|...|++++|....+...+..
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 888888888888888888888888888888888888888776665443
No 139
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.23 E-value=6.8e-06 Score=70.33 Aligned_cols=96 Identities=15% Similarity=0.093 Sum_probs=79.4
Q ss_pred hhHHHHHHHhhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--CchhHHHHHHH
Q 047992 637 IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIE-PDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPG--DVLIQRLILQI 712 (868)
Q Consensus 637 ~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~-p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~--~~~~~~~l~~~ 712 (868)
...+..+...+.+.|++++|.+.+++. ... .+..+|..+...+...|+++.|...++++++++|+ ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 344566777778888888888888776 223 35668888888999999999999999999999999 99999999999
Q ss_pred Hhhc-CCChhHHHHHHHHHhc
Q 047992 713 YAIC-GKPEDALKVRKLEREN 732 (868)
Q Consensus 713 y~~~-g~~~~a~~~~~~m~~~ 732 (868)
|... |++++|.+..+.....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 9999 9999999988766543
No 140
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.22 E-value=7.4e-07 Score=86.32 Aligned_cols=171 Identities=9% Similarity=-0.008 Sum_probs=108.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC---CCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 047992 538 MNSLIDTYAKSGNIVYSRTIFDGMSS---KDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLA 614 (868)
Q Consensus 538 ~~~Li~~y~k~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 614 (868)
.+..+......|+++.|.+.++.... .....|..+...+...|++++|++.|++..+ ..|+...+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~------- 77 (198)
T 2fbn_A 7 HHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQ------- 77 (198)
T ss_dssp ---------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCH-------
T ss_pred ccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchh-------
Confidence 44555566677888888888775442 2455778888888899999999999999887 44432211000
Q ss_pred CChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 047992 615 GMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAI 692 (868)
Q Consensus 615 g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~ 692 (868)
..++-. ..+ ....|..+..+|.+.|++++|.+.+++. ...| +..+|..+..++...|+++.|...+
T Consensus 78 -~~~~~~---~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~ 145 (198)
T 2fbn_A 78 -ILLDKK---KNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENL 145 (198)
T ss_dssp -HHHHHH---HHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred -hHHHHH---HHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHH
Confidence 000000 000 1245666777888888888888888876 3334 4568888999999999999999999
Q ss_pred HHHhccCCCCchhHHHHHHHHhhcCCChhHH-HHHHHH
Q 047992 693 ERLFDLEPGDVLIQRLILQIYAICGKPEDAL-KVRKLE 729 (868)
Q Consensus 693 ~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~-~~~~~m 729 (868)
+++++++|+++.++..++.++...|+.+++. ...+.|
T Consensus 146 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 146 YKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988887776 344444
No 141
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.21 E-value=9e-05 Score=76.51 Aligned_cols=159 Identities=8% Similarity=-0.113 Sum_probs=119.3
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCC---c-----e-ecHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCH----HHHHH
Q 047992 541 LIDTYAKSGNIVYSRTIFDGMSSKD---I-----I-TWNSLICGYVLHGFWHAALDLFDQMKSFGLK-PNR----GTFLS 606 (868)
Q Consensus 541 Li~~y~k~g~~~~A~~~f~~~~~~d---~-----~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~----~t~~~ 606 (868)
.+..+.+.|++++|...+++..... . . .+..+...+...|++++|++.|++....... ++. ..+..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4677889999999999999765321 1 1 2234566666778999999999999984322 221 25788
Q ss_pred HHHHhhccCChHHHHHHHHHhhhhcC----CCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC-------CCCCC-HHHHH
Q 047992 607 IILAHSLAGMVDLGKKVFCSITECYQ----IIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM-------PIEPD-SSIWE 673 (868)
Q Consensus 607 ll~a~~~~g~~~~a~~~~~~m~~~~~----~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~-------~~~p~-~~~w~ 673 (868)
+..++...|+.++|..+|+.+.+... ..|. ...|..+..+|.+.|++++|.+++++. ...+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88899999999999999998875332 2222 236788899999999999999998876 11223 45888
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHhccC
Q 047992 674 ALLTACRIHG-NIDLAVLAIERLFDLE 699 (868)
Q Consensus 674 ~ll~a~~~~~-~~~~a~~~~~~~~~l~ 699 (868)
.+..++...| +.+.|...+++++++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 8888999999 5799999999998743
No 142
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.21 E-value=1.8e-06 Score=96.07 Aligned_cols=200 Identities=13% Similarity=0.005 Sum_probs=113.2
Q ss_pred cHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHh
Q 047992 569 WNSLICGYVLHGFWHAALDLFDQMKSFGLKPN-RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDL 646 (868)
Q Consensus 569 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~ 646 (868)
|..+...+.+.|++++|++.|++.++ ..|+ ...+..+..++...|++++|..+|+...+. .| +...|..+..+
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~lg~~ 83 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAAS 83 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 33444455566777777777777776 4554 356666666777777777777777776652 23 34566677777
Q ss_pred hhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHH--HHhcCCHHHHHHHHH-----------HHhccCCCCchhHH----
Q 047992 647 YGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTA--CRIHGNIDLAVLAIE-----------RLFDLEPGDVLIQR---- 707 (868)
Q Consensus 647 l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a--~~~~~~~~~a~~~~~-----------~~~~l~p~~~~~~~---- 707 (868)
|.+.|++++|.+.++++ ...|+ ...|..+..+ +...|+++.|...++ ++++++|+..+++.
T Consensus 84 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 163 (477)
T 1wao_1 84 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGK 163 (477)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGS
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccccccccccc
Confidence 77777777777777765 22232 2244444444 666778888888888 77777776544321
Q ss_pred -------HHHHHHhhcCCChhHHH--HHHHHHhcCCCCCCcccEEEEcCEEEEEEeCCCCCCchHHHHHHHHhCCCc
Q 047992 708 -------LILQIYAICGKPEDALK--VRKLERENTRRNSFGQCWIEVKNLVYTFVTGGWSESYSDLLYSWLQNVPEN 775 (868)
Q Consensus 708 -------~l~~~y~~~g~~~~a~~--~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~~g~~ 775 (868)
.+...+...++..+..- +....++ -++++|....+......-..+.|| -|-+...+...|+..|..
T Consensus 164 itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~e-il~~e~~~~~~~~~~~~~~~vigD-iHG~~~~l~~~l~~~~~~ 238 (477)
T 1wao_1 164 VTISFMKELMQWYKDQKKLHRKCAYQILVQVKE-VLSKLSTLVETTLKETEKITVCGD-THGQFYDLLNIFELNGLP 238 (477)
T ss_dssp CCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHH-HHHTSCSEEEECCCSSCEEEEECB-CTTCHHHHHHHHHHHCCC
T ss_pred ccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-HHccCCCeEEeecCCCcceEEEeC-CCCCHHHHHHHHHHcCCC
Confidence 22233445555554333 2222221 224455444333332233456666 577777777777766654
No 143
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.20 E-value=7.3e-06 Score=73.49 Aligned_cols=95 Identities=11% Similarity=-0.019 Sum_probs=69.3
Q ss_pred ChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 047992 636 MIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIY 713 (868)
Q Consensus 636 ~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 713 (868)
+...+..+...+...|++++|.+.+++. ...| +..+|..+...+...|+++.|...++++++++|+++.++..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3455666666777777777777777665 2233 3557777777777888888888888888888888888888888888
Q ss_pred hhcCCChhHHHHHHHHH
Q 047992 714 AICGKPEDALKVRKLER 730 (868)
Q Consensus 714 ~~~g~~~~a~~~~~~m~ 730 (868)
...|++++|.+..+...
T Consensus 88 ~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 88 LEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 88888888877666554
No 144
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.20 E-value=2.8e-05 Score=80.34 Aligned_cols=161 Identities=7% Similarity=-0.100 Sum_probs=115.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC---CCc------eecHHHHHHHHhcCChHHHHHHHHHHHHCCCC---CC--HHH
Q 047992 538 MNSLIDTYAKSGNIVYSRTIFDGMSS---KDI------ITWNSLICGYVLHGFWHAALDLFDQMKSFGLK---PN--RGT 603 (868)
Q Consensus 538 ~~~Li~~y~k~g~~~~A~~~f~~~~~---~d~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---p~--~~t 603 (868)
+...+..|...|++++|.+.+++... .+. ..+..+...+...|++++|++.|++..+...+ +. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34567778889999999888875432 111 12344556667788999999999998763211 22 236
Q ss_pred HHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC-----hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-------HH
Q 047992 604 FLSIILAHSLAGMVDLGKKVFCSITECYQIIPM-----IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-------SS 670 (868)
Q Consensus 604 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-------~~ 670 (868)
+..+...+...|+.++|..+|+...+.....|+ ...|..+..+|.+.|++++|.+++++. ...++ ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 777888889999999999999988743322333 247788888999999999999998876 11111 55
Q ss_pred HHHHHHHHHHhcCCHHHH-HHHHHHHhcc
Q 047992 671 IWEALLTACRIHGNIDLA-VLAIERLFDL 698 (868)
Q Consensus 671 ~w~~ll~a~~~~~~~~~a-~~~~~~~~~l 698 (868)
++..+...+...|+.+.| ...+++++++
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 788888888999999999 7778888764
No 145
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.19 E-value=5.3e-05 Score=73.99 Aligned_cols=161 Identities=11% Similarity=-0.051 Sum_probs=126.4
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-CCceecHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047992 533 SSLPVMNSLIDTYAKSGNIVYSRTIFDGMSS-KDIITWNSLICGYVLHG----FWHAALDLFDQMKSFGLKPNRGTFLSI 607 (868)
Q Consensus 533 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-~d~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~p~~~t~~~l 607 (868)
.++.....|..+|...|++++|.+.|++... .+..++..+...|.. | +.++|++.|++..+.| +...+..+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~L 91 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVL 91 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 3667788888899999999999999987653 467788888888877 6 8999999999998754 45566667
Q ss_pred HHHhhc----cCChHHHHHHHHHhhhhcCCCCC---hhHHHHHHHhhhh----cCChHHHHHHHHhC-CCCCCHHHHHHH
Q 047992 608 ILAHSL----AGMVDLGKKVFCSITECYQIIPM---IEHYSAMIDLYGR----SGKLEEAMEFIEDM-PIEPDSSIWEAL 675 (868)
Q Consensus 608 l~a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~lvd~l~r----~g~~~eA~~~i~~~-~~~p~~~~w~~l 675 (868)
...+.. .++.++|..+|+...+ ..|. ...+..|..+|.. .+++++|.+++++. ...+++..+..|
T Consensus 92 g~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~L 168 (212)
T 3rjv_A 92 ARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWA 168 (212)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 777776 7899999999998875 3342 6677788888887 88999999999988 333455566667
Q ss_pred HHHHHh------cCCHHHHHHHHHHHhccCC
Q 047992 676 LTACRI------HGNIDLAVLAIERLFDLEP 700 (868)
Q Consensus 676 l~a~~~------~~~~~~a~~~~~~~~~l~p 700 (868)
...+.. .+|.+.|...++++.+..+
T Consensus 169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 169 GMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 776653 2399999999999998864
No 146
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.18 E-value=2.5e-06 Score=77.41 Aligned_cols=108 Identities=12% Similarity=0.017 Sum_probs=74.3
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 047992 603 TFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACR 680 (868)
Q Consensus 603 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~ 680 (868)
.+..+...+...|++++|..+|+......+ .+...|..+..+|.+.|++++|.+.+++. ...| ++..|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDH--YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 334444455566666666666665554211 23445666677777777777777777766 2333 3457788888899
Q ss_pred hcCCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 047992 681 IHGNIDLAVLAIERLFDLEPGDVLIQRLILQI 712 (868)
Q Consensus 681 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 712 (868)
..|+++.|...++++++++|+++........+
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 99999999999999999999998877665544
No 147
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.18 E-value=1.4e-05 Score=77.30 Aligned_cols=152 Identities=14% Similarity=0.088 Sum_probs=81.8
Q ss_pred hcCCHHHHHH---HHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCH-HHHHHHHHHhhccCChH
Q 047992 547 KSGNIVYSRT---IFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKS----FGLKPNR-GTFLSIILAHSLAGMVD 618 (868)
Q Consensus 547 k~g~~~~A~~---~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~-~t~~~ll~a~~~~g~~~ 618 (868)
..|++++|.+ .+..-+......|+.+...|...|++++|++.|++..+ .|..|.. ..+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4577777777 55443333455677777777777777777777777655 1222222 34555555666677777
Q ss_pred HHHHHHHHhhhhcCCCC-C----hhHHHHHHHhhhhcCChHHHHHHHHhC----CCCCCH----HHHHHHHHHHHhcCCH
Q 047992 619 LGKKVFCSITECYQIIP-M----IEHYSAMIDLYGRSGKLEEAMEFIEDM----PIEPDS----SIWEALLTACRIHGNI 685 (868)
Q Consensus 619 ~a~~~~~~m~~~~~~~p-~----~~~y~~lvd~l~r~g~~~eA~~~i~~~----~~~p~~----~~w~~ll~a~~~~~~~ 685 (868)
+|..+|+...+...-.| + ...+..+..++...|++++|.+.+++. +..++. .++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 77777666554322112 1 223455555566666666666655543 111111 1234445555556666
Q ss_pred HHHHHHHHHHhcc
Q 047992 686 DLAVLAIERLFDL 698 (868)
Q Consensus 686 ~~a~~~~~~~~~l 698 (868)
+.|...+++++++
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655554
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.16 E-value=1.8e-05 Score=68.36 Aligned_cols=102 Identities=13% Similarity=0.067 Sum_probs=60.8
Q ss_pred HhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 047992 610 AHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDL 687 (868)
Q Consensus 610 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~ 687 (868)
.+...|++++|..+|+...... +.+...+..+..++.+.|++++|.+.+++. ...| +..+|..+..++...|+++.
T Consensus 13 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 90 (118)
T 1elw_A 13 KALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 90 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHH
Confidence 3334444444444444433321 112334444555555566666666665554 2223 45577777777888888888
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHH
Q 047992 688 AVLAIERLFDLEPGDVLIQRLILQIY 713 (868)
Q Consensus 688 a~~~~~~~~~l~p~~~~~~~~l~~~y 713 (868)
|...++++++++|+++..+..++.+.
T Consensus 91 A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 91 AKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 88888888888888887777776654
No 149
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.16 E-value=5.9e-06 Score=77.04 Aligned_cols=107 Identities=18% Similarity=-0.012 Sum_probs=75.9
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHH
Q 047992 602 GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTAC 679 (868)
Q Consensus 602 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~ 679 (868)
..+..+...+...|++++|+.+|+...+... .+...|..+..+|.+.|++++|++.+++. ...|+ ..+|..+..++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAP--ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5566666777788888888888887766321 24556777777777888888888777776 33343 55777777777
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 047992 680 RIHGNIDLAVLAIERLFDLEPGDVLIQRLIL 710 (868)
Q Consensus 680 ~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 710 (868)
...|+++.|...++++++++|+++..+..++
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 7778888888888888888887777665554
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.14 E-value=9.2e-06 Score=70.23 Aligned_cols=95 Identities=12% Similarity=0.096 Sum_probs=84.3
Q ss_pred hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047992 637 IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYA 714 (868)
Q Consensus 637 ~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 714 (868)
...+..++..+.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|...++++++++|+++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 455777888899999999999999987 3334 66788999999999999999999999999999999999999999999
Q ss_pred hcCCChhHHHHHHHHHh
Q 047992 715 ICGKPEDALKVRKLERE 731 (868)
Q Consensus 715 ~~g~~~~a~~~~~~m~~ 731 (868)
..|++++|.+..+...+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999998876654
No 151
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=2.4e-05 Score=70.89 Aligned_cols=118 Identities=16% Similarity=0.084 Sum_probs=78.9
Q ss_pred CceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHH
Q 047992 565 DIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMI 644 (868)
Q Consensus 565 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 644 (868)
+...|..+...+...|++++|++.|++..+ ..|+... ....|..+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~--------------------------------~~~~~~~~a 72 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQD--------------------------------QAVLHRNRA 72 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHH--------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchH--------------------------------HHHHHHHHH
Confidence 445566666666677777777777777666 4454200 022344455
Q ss_pred HhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 047992 645 DLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAIC 716 (868)
Q Consensus 645 d~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 716 (868)
.+|.+.|++++|.+.+++. ...| +..+|..+..++...|+++.|...++++++++|++...+..+..+....
T Consensus 73 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (148)
T 2dba_A 73 ACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPS 146 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCSC
T ss_pred HHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhhc
Confidence 5555666666666665554 2233 4567888888888999999999999999999999988888887775443
No 152
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.14 E-value=7.9e-07 Score=98.52 Aligned_cols=93 Identities=9% Similarity=0.065 Sum_probs=76.3
Q ss_pred hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047992 637 IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYA 714 (868)
Q Consensus 637 ~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 714 (868)
...|..+..+|.+.|++++|++.++++ ...| +...|..+..++...|+++.|...++++++++|++..++..|+.+|.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 356778888899999999999999887 3444 45689999999999999999999999999999999999999999999
Q ss_pred hcCCChhHHH-HHHHH
Q 047992 715 ICGKPEDALK-VRKLE 729 (868)
Q Consensus 715 ~~g~~~~a~~-~~~~m 729 (868)
..|+++++.+ ..+.|
T Consensus 397 ~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 397 KAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998876 34444
No 153
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.10 E-value=1.5e-05 Score=69.63 Aligned_cols=96 Identities=19% Similarity=0.309 Sum_probs=85.1
Q ss_pred hhHHHHHHHhhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047992 637 IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIE-PDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYA 714 (868)
Q Consensus 637 ~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~-p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 714 (868)
...+..+...+.+.|++++|.+.++++ ... .+..+|..+...+...|+++.|...++++++++|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 456778889999999999999999987 233 456789999999999999999999999999999999999999999999
Q ss_pred hcCCChhHHHHHHHHHhc
Q 047992 715 ICGKPEDALKVRKLEREN 732 (868)
Q Consensus 715 ~~g~~~~a~~~~~~m~~~ 732 (868)
..|++++|.+..+.+.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999988776554
No 154
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.09 E-value=1.4e-05 Score=70.90 Aligned_cols=97 Identities=13% Similarity=0.067 Sum_probs=85.3
Q ss_pred ChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 047992 636 MIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIY 713 (868)
Q Consensus 636 ~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 713 (868)
+...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|...++++++++|+++..+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3556777888899999999999999987 4555 5668999999999999999999999999999999999999999999
Q ss_pred hhcCCChhHHHHHHHHHhc
Q 047992 714 AICGKPEDALKVRKLEREN 732 (868)
Q Consensus 714 ~~~g~~~~a~~~~~~m~~~ 732 (868)
...|++++|.+..+...+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999988766543
No 155
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.08 E-value=1.2e-05 Score=74.82 Aligned_cols=92 Identities=16% Similarity=-0.018 Sum_probs=41.4
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHh
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN-RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDL 646 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~ 646 (868)
.|..+...|...|++++|++.|++.++ +.|+ ...+..+..++...|++++|+..|+...+.. ..+...|..+..+
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 344444444455555555555555444 2332 2334444444444555555555554444321 1113344444444
Q ss_pred hhhcCChHHHHHHHHhC
Q 047992 647 YGRSGKLEEAMEFIEDM 663 (868)
Q Consensus 647 l~r~g~~~eA~~~i~~~ 663 (868)
|.+.|++++|.+.+++.
T Consensus 89 ~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHH
Confidence 55555555555544443
No 156
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=2.1e-05 Score=71.32 Aligned_cols=97 Identities=11% Similarity=0.023 Sum_probs=85.5
Q ss_pred ChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 047992 636 MIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD----SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLIL 710 (868)
Q Consensus 636 ~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~----~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 710 (868)
+...+..+...+.+.|++++|.+.+++. ...|+ ..+|..+...+...|+++.|...++++++++|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4556777888888999999999999887 66677 568888999999999999999999999999999999999999
Q ss_pred HHHhhcCCChhHHHHHHHHHhc
Q 047992 711 QIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 711 ~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
.+|...|++++|.+..+...+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999987766543
No 157
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.07 E-value=5.2e-06 Score=73.55 Aligned_cols=91 Identities=7% Similarity=-0.013 Sum_probs=76.5
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCch-------hHHHH
Q 047992 639 HYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVL-------IQRLI 709 (868)
Q Consensus 639 ~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~-------~~~~l 709 (868)
.+.-+...+.+.|++++|++.+++. .+.| +..+|..+..++...|+++.|...++++++++|++.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3556778888899999999998887 4445 4668999999999999999999999999999998764 67778
Q ss_pred HHHHhhcCCChhHHHHHHHH
Q 047992 710 LQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 710 ~~~y~~~g~~~~a~~~~~~m 729 (868)
+++|...|++++|.+..+..
T Consensus 90 g~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999976543
No 158
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.07 E-value=4.3e-05 Score=73.71 Aligned_cols=156 Identities=14% Similarity=0.042 Sum_probs=107.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---------CCceecHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMSS---------KDIITWNSLICGYVLHGFWHAALDLFDQMKSF----GLKP- 599 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p- 599 (868)
...++..+...|...|++++|...|++... ....+++.+...|...|++++|++.|++..+. +-.|
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 344566777777888888888777775432 12346777888888899999999888887652 1122
Q ss_pred C-HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC----hhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHH
Q 047992 600 N-RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM----IEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEA 674 (868)
Q Consensus 600 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ 674 (868)
. ...+..+...+...|++++|..+|+...+...-.++ ...+..+..++.+.|++++|.+.+++
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------------ 172 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR------------ 172 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHH------------
Confidence 1 234666677788889999999999887653221222 22357788899999999999999886
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCC
Q 047992 675 LLTACRIHGNIDLAVLAIERLFDLEPG 701 (868)
Q Consensus 675 ll~a~~~~~~~~~a~~~~~~~~~l~p~ 701 (868)
.+......|+......+...+-...|.
T Consensus 173 al~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (203)
T 3gw4_A 173 ARDIFAELEDSEAVNELMTRLNGLEHH 199 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHcCCHHHHHHHHhcccchhhc
Confidence 345556667766666666666666554
No 159
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.06 E-value=1.3e-05 Score=70.69 Aligned_cols=77 Identities=13% Similarity=0.034 Sum_probs=56.6
Q ss_pred hHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC------CCCchhHHHH
Q 047992 638 EHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLE------PGDVLIQRLI 709 (868)
Q Consensus 638 ~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~------p~~~~~~~~l 709 (868)
..|..+..++.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...++++++++ |++......+
T Consensus 39 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l 118 (126)
T 3upv_A 39 RGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 118 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHH
Confidence 44555566666666666666666655 2334 35578888888899999999999999999999 8888887777
Q ss_pred HHHHh
Q 047992 710 LQIYA 714 (868)
Q Consensus 710 ~~~y~ 714 (868)
..+..
T Consensus 119 ~~~~~ 123 (126)
T 3upv_A 119 YKASQ 123 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 160
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.06 E-value=2e-05 Score=73.17 Aligned_cols=124 Identities=15% Similarity=0.063 Sum_probs=54.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhh
Q 047992 570 NSLICGYVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYG 648 (868)
Q Consensus 570 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~ 648 (868)
..+...+...|++++|+..|++..+ ..| +...+..+..++...|++++|..+|+...+.. +.+...|..+..++.
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHH
Confidence 3333444444444444444444444 222 22333344444444444444444444444321 112334444555555
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHH--HHHHHHhcCCHHHHHHHHHHHhc
Q 047992 649 RSGKLEEAMEFIEDM-PIEP-DSSIWEA--LLTACRIHGNIDLAVLAIERLFD 697 (868)
Q Consensus 649 r~g~~~eA~~~i~~~-~~~p-~~~~w~~--ll~a~~~~~~~~~a~~~~~~~~~ 697 (868)
+.|++++|.+.++++ ...| +...|.. ++..+...|+++.|...+++..+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 555555555555544 2222 2223322 22224455666666666665543
No 161
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.06 E-value=6.8e-05 Score=77.54 Aligned_cols=189 Identities=10% Similarity=-0.012 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC--CHHHHHHHHhcCC---CCCceecHHHHHHHHhcCC-hHHHHHHHH
Q 047992 517 NKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSG--NIVYSRTIFDGMS---SKDIITWNSLICGYVLHGF-WHAALDLFD 590 (868)
Q Consensus 517 ~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g--~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~-~~~A~~l~~ 590 (868)
+........++.. .+.+..+++.-...+.+.| .++++...++++. ++|..+|+--.-.+...|. .+++++.++
T Consensus 91 ~~EL~~~~~~L~~-~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRV-NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 3444444444442 2336677777666777777 4788888888765 5677788887777777787 588999999
Q ss_pred HHHHCCCCC-CHHHHHHHHHHhhcc--------------CChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhc----
Q 047992 591 QMKSFGLKP-NRGTFLSIILAHSLA--------------GMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRS---- 650 (868)
Q Consensus 591 ~m~~~g~~p-~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~---- 650 (868)
++++ ..| |...|........+. +.++++++++...... .|+ ...|.-+-.++.+.
T Consensus 170 ~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 170 SLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHH--HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHH--HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCcc
Confidence 9888 455 445555544444433 4577888888877763 333 23343333444444
Q ss_pred -------CChHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----hcCCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 047992 651 -------GKLEEAMEFIEDM-PIEPDSSIWEALLTACR-----IHGNIDLAVLAIERLFDLEPGDVLIQRLILQI 712 (868)
Q Consensus 651 -------g~~~eA~~~i~~~-~~~p~~~~w~~ll~a~~-----~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 712 (868)
+.++++++.++++ ..+||. .|.-+..+.. ..+..+.....+.++.++||-..+.|.-|..-
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 5678888888887 566776 4653333321 34677788888889999999888888776543
No 162
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.05 E-value=0.00014 Score=75.54 Aligned_cols=208 Identities=10% Similarity=-0.013 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcC-CHHHHHHHHhcCC---CCCceecHHHHHHHHhc-C-ChHHHHHHHH
Q 047992 518 KVKEIHGCVLRRSLES-SLPVMNSLIDTYAKSG-NIVYSRTIFDGMS---SKDIITWNSLICGYVLH-G-FWHAALDLFD 590 (868)
Q Consensus 518 ~~~~i~~~~~~~~~~~-~~~~~~~Li~~y~k~g-~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~-g-~~~~A~~l~~ 590 (868)
.+.++...++. +.| +..+++.-...+...| .++++.+.++.+. +++...|+--.-.+... + ++++++++++
T Consensus 72 ~AL~lt~~~L~--~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 149 (349)
T 3q7a_A 72 RALELTEIIVR--MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIH 149 (349)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHH--hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 34444444444 333 4455666666666677 5888888888765 56677888877777766 6 8889999999
Q ss_pred HHHHCCCCC-CHHHHHHHHHHhhccCChH--------HHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCC-------hH
Q 047992 591 QMKSFGLKP-NRGTFLSIILAHSLAGMVD--------LGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGK-------LE 654 (868)
Q Consensus 591 ~m~~~g~~p-~~~t~~~ll~a~~~~g~~~--------~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~-------~~ 654 (868)
++.+ ..| |...|..-.....+.|..+ +++++++.+.+.. .-+...|.-...++.+.|+ ++
T Consensus 150 k~L~--~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 150 GSLL--PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHTS--SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHH--hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccccchHHHH
Confidence 9887 455 4466666555555556665 8888888888742 2234455555666767665 78
Q ss_pred HHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHhccC------CCCchhH
Q 047992 655 EAMEFIEDM-PIE-PDSSIWEALLTACRIHGNI--------------------DLAVLAIERLFDLE------PGDVLIQ 706 (868)
Q Consensus 655 eA~~~i~~~-~~~-p~~~~w~~ll~a~~~~~~~--------------------~~a~~~~~~~~~l~------p~~~~~~ 706 (868)
+++++++++ ... -|...|+-+-+.+...|+. +.-...+..++... +.++-+.
T Consensus 226 eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 305 (349)
T 3q7a_A 226 DELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence 999998877 333 4677998888877766543 22333333333332 4667788
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 707 RLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 707 ~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
..|+.+|...|+.++|.++.+.+.+
T Consensus 306 ~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 306 EYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 8999999999999999999988864
No 163
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.01 E-value=3.2e-06 Score=73.71 Aligned_cols=80 Identities=14% Similarity=0.104 Sum_probs=48.4
Q ss_pred cCChHHHHHHHHhC-CC---CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHH
Q 047992 650 SGKLEEAMEFIEDM-PI---EPDS-SIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALK 724 (868)
Q Consensus 650 ~g~~~eA~~~i~~~-~~---~p~~-~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 724 (868)
.|++++|++.+++. .. .|+. .+|..|...+...|+++.|...++++++++|+++.++..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45555566655554 23 2332 3666666666667777777777777777777777777777777777777777776
Q ss_pred HHHHH
Q 047992 725 VRKLE 729 (868)
Q Consensus 725 ~~~~m 729 (868)
..+..
T Consensus 83 ~~~~a 87 (117)
T 3k9i_A 83 LLLKI 87 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 164
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.01 E-value=1.7e-05 Score=69.96 Aligned_cols=96 Identities=18% Similarity=0.100 Sum_probs=84.7
Q ss_pred hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047992 637 IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYA 714 (868)
Q Consensus 637 ~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 714 (868)
...+..+...+...|++++|.+.+++. ...| +..+|..+...+...|+++.|...++++++++|+++..+..++.+|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 456777888999999999999999987 3334 56789999999999999999999999999999999999999999999
Q ss_pred hcCCChhHHHHHHHHHhc
Q 047992 715 ICGKPEDALKVRKLEREN 732 (868)
Q Consensus 715 ~~g~~~~a~~~~~~m~~~ 732 (868)
..|++++|.+..+...+.
T Consensus 92 ~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhc
Confidence 999999999988766544
No 165
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.99 E-value=9.7e-06 Score=73.37 Aligned_cols=117 Identities=9% Similarity=-0.022 Sum_probs=73.6
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHh
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDL 646 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~ 646 (868)
.|......+...|++++|++.|++.++ +.|+...- ++ ....| +...|.-+..+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~--------------~a----------~~~~~~~a~a~~n~g~a 66 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPE--------------EA----------FDHAGFDAFCHAGLAEA 66 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTT--------------SC----------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcch--------------hh----------hhhccchHHHHHHHHHH
Confidence 355566667777888888888888877 55551000 00 00000 01134444444
Q ss_pred hhhcCChHHHHHHHHhC--------CCCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 047992 647 YGRSGKLEEAMEFIEDM--------PIEPDSS-IW----EALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLIL 710 (868)
Q Consensus 647 l~r~g~~~eA~~~i~~~--------~~~p~~~-~w----~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 710 (868)
+.+.|++++|++.+++. ++.|+.. .| .....++...|+++.|...++++++++|++.+.+--+.
T Consensus 67 l~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~ 143 (159)
T 2hr2_A 67 LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKE 143 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 55555555555444443 3478765 88 88999999999999999999999999999877655443
No 166
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.99 E-value=9e-05 Score=83.83 Aligned_cols=168 Identities=10% Similarity=-0.021 Sum_probs=135.1
Q ss_pred CHHHHHHHHhcCC---CCCceecHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccC
Q 047992 550 NIVYSRTIFDGMS---SKDIITWNSLICGYVLHGF----------WHAALDLFDQMKSFGLKPN-RGTFLSIILAHSLAG 615 (868)
Q Consensus 550 ~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g 615 (868)
.-++|.+.++++. +.+...|+.--..+...|+ ++++++.++++.+ ..|. ...|..-..+..+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcc
Confidence 3466778777654 4566788887777777777 8999999999998 5664 477877777888888
Q ss_pred --ChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------
Q 047992 616 --MVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSG-KLEEAMEFIEDM-PIEP-DSSIWEALLTACRIH-------- 682 (868)
Q Consensus 616 --~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g-~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~-------- 682 (868)
++++++.+++.+.+.. .-+...|.--..++.+.| .+++|.++++++ ...| |...|+.........
T Consensus 122 ~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 6699999999998842 234455666677788888 899999999998 4444 677999998887653
Q ss_pred ------CCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChh
Q 047992 683 ------GNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPED 721 (868)
Q Consensus 683 ------~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 721 (868)
+.++.+...++++++++|+|.++|..+.+++...|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999999666
No 167
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.94 E-value=1.8e-05 Score=73.40 Aligned_cols=60 Identities=12% Similarity=-0.009 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 670 SIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 670 ~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
.+|..+..++...|+++.|...++++++++|+++.+|..++.+|...|++++|....+..
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 366666666777777777777777777777777777777777777777777777765544
No 168
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.92 E-value=2.3e-05 Score=70.92 Aligned_cols=61 Identities=11% Similarity=-0.033 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcc-------CCCCchhH----HHHHHHHhhcCCChhHHHHHHHHH
Q 047992 670 SIWEALLTACRIHGNIDLAVLAIERLFDL-------EPGDVLIQ----RLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 670 ~~w~~ll~a~~~~~~~~~a~~~~~~~~~l-------~p~~~~~~----~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
..|..+..++...|+++.|...+++++++ +|+++.+| ..++..|...|++++|....+...
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 38999999999999999999999999999 99999999 999999999999999999776553
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.92 E-value=3.8e-05 Score=65.55 Aligned_cols=103 Identities=17% Similarity=0.113 Sum_probs=65.1
Q ss_pred CCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHH
Q 047992 564 KDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAM 643 (868)
Q Consensus 564 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l 643 (868)
.+...|..+...+...|++++|+..|++..+ ..|+. ...+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~-----------------------------------~~~~~~~ 46 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQ--LDPEE-----------------------------------SKYWLMK 46 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHH--HCCCC-----------------------------------HHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCcCC-----------------------------------HHHHHHH
Confidence 3455666666677777777777777777665 23322 2233444
Q ss_pred HHhhhhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhc-CCHHHHHHHHHHHhccCCCCc
Q 047992 644 IDLYGRSGKLEEAMEFIEDM-PIEP---DSSIWEALLTACRIH-GNIDLAVLAIERLFDLEPGDV 703 (868)
Q Consensus 644 vd~l~r~g~~~eA~~~i~~~-~~~p---~~~~w~~ll~a~~~~-~~~~~a~~~~~~~~~l~p~~~ 703 (868)
..++.+.|++++|.+.+++. ...| +..+|..+...+... |+.+.|...++++++..|.++
T Consensus 47 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 47 GKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 55555556666666555554 2233 355777777777778 888888888888888888664
No 170
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.91 E-value=1.2e-05 Score=89.29 Aligned_cols=116 Identities=13% Similarity=-0.012 Sum_probs=98.6
Q ss_pred HHhhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCH
Q 047992 609 LAHSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRIHGNI 685 (868)
Q Consensus 609 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~~ 685 (868)
..+...|++++|..+|+...+. .| +...|..+..+|.+.|++++|++.+++. ...|+ ..+|..+..++...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3566789999999999998874 34 3678899999999999999999999987 45554 56899999999999999
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHHH--HhhcCCChhHHHHHH
Q 047992 686 DLAVLAIERLFDLEPGDVLIQRLILQI--YAICGKPEDALKVRK 727 (868)
Q Consensus 686 ~~a~~~~~~~~~l~p~~~~~~~~l~~~--y~~~g~~~~a~~~~~ 727 (868)
+.|+..++++++++|+++.++..++.+ |...|++++|.+..+
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999998 889999999999865
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.91 E-value=2e-05 Score=69.74 Aligned_cols=97 Identities=15% Similarity=0.056 Sum_probs=41.4
Q ss_pred HHhhccCChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc
Q 047992 609 LAHSLAGMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD----SSIWEALLTACRIH 682 (868)
Q Consensus 609 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~----~~~w~~ll~a~~~~ 682 (868)
..+...|++++|...|+...+..+-.|. ...+..+..++.+.|++++|.+.+++. ...|+ ..++..+..++...
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~ 89 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGE 89 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHc
Confidence 3444455555555555554443221111 023334444444445555544444443 11121 22344444444444
Q ss_pred CCHHHHHHHHHHHhccCCCCchh
Q 047992 683 GNIDLAVLAIERLFDLEPGDVLI 705 (868)
Q Consensus 683 ~~~~~a~~~~~~~~~l~p~~~~~ 705 (868)
|+++.|...++++++..|+++..
T Consensus 90 g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 90 GKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp TCHHHHHHHHHHHHHHSTTSHHH
T ss_pred CCHHHHHHHHHHHHHHCCCChHH
Confidence 44555554444444444444433
No 172
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.88 E-value=4.4e-05 Score=68.23 Aligned_cols=108 Identities=9% Similarity=-0.060 Sum_probs=67.1
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 047992 602 GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTAC 679 (868)
Q Consensus 602 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~ 679 (868)
..+..+...+...|++++|..+|+...+.. +.+...|..+..++.+.|++++|.+.+++. ...| +..+|..+..++
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 344444444445555555555555444321 112344555666666677777777666665 2233 455888888888
Q ss_pred HhcCCHHHHHHHHHHHhccCCC-----CchhHHHHHH
Q 047992 680 RIHGNIDLAVLAIERLFDLEPG-----DVLIQRLILQ 711 (868)
Q Consensus 680 ~~~~~~~~a~~~~~~~~~l~p~-----~~~~~~~l~~ 711 (868)
...|+++.|...++++++++|+ +......+..
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~ 124 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 124 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 4444444443
No 173
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.88 E-value=0.00044 Score=71.44 Aligned_cols=155 Identities=13% Similarity=0.045 Sum_probs=114.1
Q ss_pred HHHHHHHHhcCC---CCCceecHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCC-hHHHHHH
Q 047992 551 IVYSRTIFDGMS---SKDIITWNSLICGYVLHGF--WHAALDLFDQMKSFGLKP-NRGTFLSIILAHSLAGM-VDLGKKV 623 (868)
Q Consensus 551 ~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~-~~~a~~~ 623 (868)
++++...++.+. +++..+|+--.-.+...|. ++++++.++++.+ ..| |...|..--....+.|. +++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~--~dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 567777777654 6788899988888888884 8999999999999 456 55777777777778888 5999999
Q ss_pred HHHhhhhcCCCCChhHHHHHHHhhhhc--------------CChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhc-----
Q 047992 624 FCSITECYQIIPMIEHYSAMIDLYGRS--------------GKLEEAMEFIEDM-PI-EPDSSIWEALLTACRIH----- 682 (868)
Q Consensus 624 ~~~m~~~~~~~p~~~~y~~lvd~l~r~--------------g~~~eA~~~i~~~-~~-~p~~~~w~~ll~a~~~~----- 682 (868)
+..+.+...- +...|.-...++.+. +.++++++++++. .. +-|..+|+-+-+.....
T Consensus 168 ~~~~I~~~p~--N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRNFS--NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHCSC--CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHCCC--CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 9999885332 333344444444433 5689999999887 33 34677998777766554
Q ss_pred ------CCHHHHHHHHHHHhccCCCCchhHHHHHH
Q 047992 683 ------GNIDLAVLAIERLFDLEPGDVLIQRLILQ 711 (868)
Q Consensus 683 ------~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 711 (868)
+-++.+...++++++++|++. +.+++-
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~--w~l~~~ 278 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENK--WCLLTI 278 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccc--hHHHHH
Confidence 458999999999999999984 444443
No 174
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.87 E-value=5.8e-05 Score=77.39 Aligned_cols=103 Identities=11% Similarity=-0.018 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 047992 601 RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLT 677 (868)
Q Consensus 601 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~ 677 (868)
...+..+...+...|++++|..+|+...+. .| +...|..+..+|.+.|++++|.+.+++. ...|+ ...|..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 355666667777778888888888777663 23 4556777777777777777777777775 44454 446777777
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCchhH
Q 047992 678 ACRIHGNIDLAVLAIERLFDLEPGDVLIQ 706 (868)
Q Consensus 678 a~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 706 (868)
++...|+++.|...++++++++|+++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 109 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNF 109 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhH
Confidence 77777777777777777777777665443
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.87 E-value=3.2e-05 Score=68.20 Aligned_cols=114 Identities=11% Similarity=-0.016 Sum_probs=65.9
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHh
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN-RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDL 646 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~ 646 (868)
.|..+...+...|++++|+..|++..+. .|+ ...+..+...+...|++++|..+|+...+..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------------- 68 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG--------------- 68 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---------------
Confidence 4555555666666666666666666552 232 2333344444444444444444444433311
Q ss_pred hhhcCChHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 047992 647 YGRSGKLEEAMEFIEDMPI-EPD----SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAIC 716 (868)
Q Consensus 647 l~r~g~~~eA~~~i~~~~~-~p~----~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 716 (868)
|. .++ ..+|..+..++...|+++.|...+++++++.| ++.....+..++...
T Consensus 69 -----------------~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 69 -----------------RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp -----------------HHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred -----------------cccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 11 122 44677777778888888888888888888888 566666666655443
No 176
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.86 E-value=1.3e-05 Score=77.39 Aligned_cols=116 Identities=12% Similarity=0.041 Sum_probs=64.5
Q ss_pred hchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCc----------------eecHH
Q 047992 511 AYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSS---KDI----------------ITWNS 571 (868)
Q Consensus 511 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~d~----------------~~~~~ 571 (868)
..++.++.+++.+...... .......+..+...|.+.|++++|...|++... .+. ..|..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93 (198)
T ss_dssp -------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 3455555555555432211 001234567788899999999999999997542 333 45666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCChHHHHHHHHHhhh
Q 047992 572 LICGYVLHGFWHAALDLFDQMKSFGLKPN-RGTFLSIILAHSLAGMVDLGKKVFCSITE 629 (868)
Q Consensus 572 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 629 (868)
+...|...|++++|+..|++.++ +.|+ ...+..+..++...|++++|..+|+...+
T Consensus 94 la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 94 LATCYNKNKDYPKAIDHASKVLK--IDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 66666666677777766666666 3443 24444444455555555555555554443
No 177
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.86 E-value=0.00085 Score=69.65 Aligned_cols=173 Identities=13% Similarity=0.035 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHhc-C-CHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCC-CH
Q 047992 536 PVMNSLIDTYAKS-G-NIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWH--------AALDLFDQMKSFGLKP-NR 601 (868)
Q Consensus 536 ~~~~~Li~~y~k~-g-~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p-~~ 601 (868)
.+++.-...+.+. + +.+++.+.++++. ++|..+|+--.-.+.+.|..+ ++++.++++++ ..| |.
T Consensus 124 ~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~--~dp~N~ 201 (349)
T 3q7a_A 124 QVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR--VDGRNN 201 (349)
T ss_dssp HHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH--hCCCCH
Confidence 3344333333333 4 4556666665554 344555655544444444444 77788888777 344 44
Q ss_pred HHHHHHHHHhhccCC-------hHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCC--------------------hH
Q 047992 602 GTFLSIILAHSLAGM-------VDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGK--------------------LE 654 (868)
Q Consensus 602 ~t~~~ll~a~~~~g~-------~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~--------------------~~ 654 (868)
..|........+.|. +++++++++.+.....- +...|.-+-.++.+.|+ +.
T Consensus 202 SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~--n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (349)
T 3q7a_A 202 SAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH--NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIE 279 (349)
T ss_dssp HHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCCCcccccccccccccccccccch
Confidence 666666666666654 57777777776653222 22334444444554443 34
Q ss_pred HHHHHHHhCC-C-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-ccCCCCchhHHHHHHH
Q 047992 655 EAMEFIEDMP-I-------EPDSSIWEALLTACRIHGNIDLAVLAIERLF-DLEPGDVLIQRLILQI 712 (868)
Q Consensus 655 eA~~~i~~~~-~-------~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~-~l~p~~~~~~~~l~~~ 712 (868)
+..++..++. . .+.+..+.-|...+...|+.+.|.++++.+. +.||-...++...+..
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 280 TVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp ------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred hHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 4555555551 1 2566788889999999999999999999997 7899877777665543
No 178
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.86 E-value=2.9e-05 Score=66.36 Aligned_cols=90 Identities=11% Similarity=0.058 Sum_probs=76.1
Q ss_pred ChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------chhHH
Q 047992 636 MIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGD------VLIQR 707 (868)
Q Consensus 636 ~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~------~~~~~ 707 (868)
+.+.+..+...+.+.|++++|.+.+++. ...| +..+|..+..++...|+++.|...++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3455677788888999999999998887 3344 56689999999999999999999999999999999 88889
Q ss_pred HHHHHHhhcCCChhHHHH
Q 047992 708 LILQIYAICGKPEDALKV 725 (868)
Q Consensus 708 ~l~~~y~~~g~~~~a~~~ 725 (868)
.++.+|...|++++|.+.
T Consensus 83 ~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHhHhhhHhH
Confidence 999999999988877553
No 179
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.85 E-value=3.2e-05 Score=67.71 Aligned_cols=66 Identities=15% Similarity=0.136 Sum_probs=44.0
Q ss_pred hHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 047992 638 EHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDV 703 (868)
Q Consensus 638 ~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 703 (868)
..|..+..++.+.|++++|++.+++. ...| +...|..|..++...|+++.|...++++++++|+++
T Consensus 52 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 52 EAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 34555566666667777777776665 3344 455788888888889999999999999999999764
No 180
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.85 E-value=3.8e-05 Score=67.73 Aligned_cols=95 Identities=8% Similarity=0.028 Sum_probs=80.2
Q ss_pred hHHHHHHHhhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-------chhHHH
Q 047992 638 EHYSAMIDLYGRSGKLEEAMEFIEDM-PIE-PDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGD-------VLIQRL 708 (868)
Q Consensus 638 ~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~-p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~-------~~~~~~ 708 (868)
..+..+...+...|++++|.+.+++. ... .+..+|..+...+...|+++.|...+++++++.|++ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44666777888888999998888876 223 356688888889999999999999999999999887 888999
Q ss_pred HHHHHhhcCCChhHHHHHHHHHhc
Q 047992 709 ILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 709 l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
++.+|...|++++|.+..+...+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999988776553
No 181
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.84 E-value=6.9e-05 Score=66.18 Aligned_cols=60 Identities=10% Similarity=-0.071 Sum_probs=34.8
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhh
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITE 629 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 629 (868)
.|..+...+.+.|++++|++.|++.++ +.|+. ..+..+..++...|++++|+..|+...+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344555566666666666666666666 45543 4445555555666666666666655443
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.84 E-value=2.9e-05 Score=82.05 Aligned_cols=145 Identities=10% Similarity=-0.060 Sum_probs=81.1
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhh
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLY 647 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l 647 (868)
.|..+...+...|++++|+..|++.+. ..|+... +...|..+++...+. ...|..+..+|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHHH
Confidence 355666777788899999999998887 5666542 233444444443332 12567788888
Q ss_pred hhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh-hcCCChhHHH
Q 047992 648 GRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYA-ICGKPEDALK 724 (868)
Q Consensus 648 ~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~-~~g~~~~a~~ 724 (868)
.+.|++++|.+.+++. ...| +...|..+..++...|+++.|+..++++++++|+++.++..|+.+.. ..+..+++.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999988877 3444 45688888899999999999999999999999999999999998844 4566777777
Q ss_pred HHHHHHhc
Q 047992 725 VRKLEREN 732 (868)
Q Consensus 725 ~~~~m~~~ 732 (868)
+.+.|-+.
T Consensus 321 ~~~~~l~~ 328 (338)
T 2if4_A 321 MYKGIFKG 328 (338)
T ss_dssp --------
T ss_pred HHHHhhCC
Confidence 77666443
No 183
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.84 E-value=5.1e-05 Score=80.10 Aligned_cols=94 Identities=13% Similarity=0.113 Sum_probs=62.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCC---------------ceecHHHHHHHHhcCChHHHHHHHHHHHHC
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKD---------------IITWNSLICGYVLHGFWHAALDLFDQMKSF 595 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d---------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 595 (868)
+...+..+...|.+.|++++|...|++.. +.+ ...|+.+...|...|++++|++.|++.++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE- 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 45678889999999999999999999764 233 35677777777777777777777777776
Q ss_pred CCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhh
Q 047992 596 GLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITE 629 (868)
Q Consensus 596 g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 629 (868)
+.|+. ..+..+..++...|++++|+..|+...+
T Consensus 225 -~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 225 -LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp -HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44532 4444444455555555555555554443
No 184
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.83 E-value=0.0001 Score=80.80 Aligned_cols=186 Identities=8% Similarity=-0.057 Sum_probs=129.6
Q ss_pred HHHHhcCCHHHHHHHHhcCCCC-----Cc---------------eecHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCH
Q 047992 543 DTYAKSGNIVYSRTIFDGMSSK-----DI---------------ITWNSLICGYVLHGFWHAALDLFDQMKSF-GLKPNR 601 (868)
Q Consensus 543 ~~y~k~g~~~~A~~~f~~~~~~-----d~---------------~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~ 601 (868)
.-+.+.|++++|.+.|..+... +. .++..+...|...|++++|++.+.++... +..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 3456678888888888765321 11 12567888899999999999999887652 111222
Q ss_pred H----HHHHHHHHhhccCChHHHHHHHHHhhhhc---CCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhC-------CCC
Q 047992 602 G----TFLSIILAHSLAGMVDLGKKVFCSITECY---QIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDM-------PIE 666 (868)
Q Consensus 602 ~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~-------~~~ 666 (868)
. ....+-..+...|..+++..++....... +..+ ....+..++.+|...|++++|.+++++. ..+
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1 12223334456788999999988765432 2222 2446778899999999999999998875 122
Q ss_pred CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-------chhHHHHHHHHhhcCCChhHHHHHHH
Q 047992 667 PDS-SIWEALLTACRIHGNIDLAVLAIERLFDLEPGD-------VLIQRLILQIYAICGKPEDALKVRKL 728 (868)
Q Consensus 667 p~~-~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~-------~~~~~~l~~~y~~~g~~~~a~~~~~~ 728 (868)
|.. .++..++..|...||++.|...+++++.+.|.. ...+..++.+|...|+|++|.+....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333 377888888999999999999999998765422 24567788899999999999885443
No 185
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.83 E-value=0.00018 Score=63.40 Aligned_cols=87 Identities=15% Similarity=0.016 Sum_probs=46.2
Q ss_pred HHHhhhhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---chhHHHHHHHHh
Q 047992 643 MIDLYGRSGKLEEAMEFIEDM-PIEPDS----SIWEALLTACRIHGNIDLAVLAIERLFDLEPGD---VLIQRLILQIYA 714 (868)
Q Consensus 643 lvd~l~r~g~~~eA~~~i~~~-~~~p~~----~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~---~~~~~~l~~~y~ 714 (868)
+...+.+.|++++|.+.+++. ...|+. .+|..+..++...|+++.|...++++++.+|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 344455555666665555554 111211 244455555555566666666666666666555 444555566666
Q ss_pred hcCCChhHHHHHHHH
Q 047992 715 ICGKPEDALKVRKLE 729 (868)
Q Consensus 715 ~~g~~~~a~~~~~~m 729 (868)
..|++++|.+..+..
T Consensus 88 ~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 88 GEGKNTEAQQTLQQV 102 (129)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 666666665554444
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.81 E-value=3.2e-05 Score=82.69 Aligned_cols=135 Identities=13% Similarity=0.134 Sum_probs=100.8
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHh
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDL 646 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~ 646 (868)
.|..+...|...|++++|++.|++.++ +.|+.. ..-..++.. ...| ....|..+..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~--~~~~~~----------~~~~~~~~~----------~~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLR--YVEGSR----------AAAEDADGA----------KLQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHH----------HHSCHHHHG----------GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH--HhhcCc----------cccChHHHH----------HHHHHHHHHHHHHHHH
Confidence 567777777788888888888877765 111110 000000000 1112 24567788889
Q ss_pred hhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHH
Q 047992 647 YGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALK 724 (868)
Q Consensus 647 l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 724 (868)
|.+.|++++|++.+++. ...|+ ...|..+..++...|+++.|...++++++++|++..++..|+.++...|+.+++.+
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987 55564 55888999999999999999999999999999999999999999999988887765
No 187
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.78 E-value=8.6e-05 Score=68.15 Aligned_cols=130 Identities=14% Similarity=0.104 Sum_probs=73.7
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHh
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKSFGLK-PNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDL 646 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~ 646 (868)
++..+...|...|++++|++.|++..+.... ++... ....+..+..+
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--------------------------------~~~~~~~l~~~ 58 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA--------------------------------ERIAYSNLGNA 58 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH--------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchH--------------------------------HHHHHHHHHHH
Confidence 4566666666777777777777766552100 11100 01123344444
Q ss_pred hhhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC------CchhHHHHHHH
Q 047992 647 YGRSGKLEEAMEFIEDM----PIEPD----SSIWEALLTACRIHGNIDLAVLAIERLFDLEPG------DVLIQRLILQI 712 (868)
Q Consensus 647 l~r~g~~~eA~~~i~~~----~~~p~----~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~------~~~~~~~l~~~ 712 (868)
+...|++++|.+.+++. +..++ ..++..+...+...|+++.|...+++++++.+. .+..+..++.+
T Consensus 59 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 138 (164)
T 3ro3_A 59 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNA 138 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHH
Confidence 44555555555544443 10111 235556666677777777777777777765322 24567778888
Q ss_pred HhhcCCChhHHHHHHHH
Q 047992 713 YAICGKPEDALKVRKLE 729 (868)
Q Consensus 713 y~~~g~~~~a~~~~~~m 729 (868)
|...|++++|.+..+..
T Consensus 139 ~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 139 YTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHTCHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHH
Confidence 88888888888865544
No 188
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.77 E-value=7.5e-05 Score=82.35 Aligned_cols=127 Identities=13% Similarity=0.007 Sum_probs=89.7
Q ss_pred hccCChHHHHHHHHHhhhhcCC-----CC-ChhHHHHHHHhhhhcCChHHHHHHHHhC---------CCCCCHH-HHHHH
Q 047992 612 SLAGMVDLGKKVFCSITECYQI-----IP-MIEHYSAMIDLYGRSGKLEEAMEFIEDM---------PIEPDSS-IWEAL 675 (868)
Q Consensus 612 ~~~g~~~~a~~~~~~m~~~~~~-----~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~---------~~~p~~~-~w~~l 675 (868)
...|++++|..+++...+...- .| ....++.+..+|...|++++|+.++++. |..|+.. +++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3455666665555544332211 11 2345677777777888888887777665 3445544 78889
Q ss_pred HHHHHhcCCHHHHHHHHHHHhc-----cCCCCchhH---HHHHHHHhhcCCChhHHHHHHHHHhcCCCCCC
Q 047992 676 LTACRIHGNIDLAVLAIERLFD-----LEPGDVLIQ---RLILQIYAICGKPEDALKVRKLERENTRRNSF 738 (868)
Q Consensus 676 l~a~~~~~~~~~a~~~~~~~~~-----l~p~~~~~~---~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~ 738 (868)
...+...|+++.|+..++++++ +.|+++.+- .+|...+...|++++|+.+++.++++-.+..|
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999986 678887554 56778899999999999999999886644433
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.77 E-value=8.4e-05 Score=68.25 Aligned_cols=137 Identities=14% Similarity=0.070 Sum_probs=85.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CCc----eecHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----
Q 047992 535 LPVMNSLIDTYAKSGNIVYSRTIFDGMSS-----KDI----ITWNSLICGYVLHGFWHAALDLFDQMKSFGL-KPN---- 600 (868)
Q Consensus 535 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~d~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~---- 600 (868)
..++..+...|...|++++|...|++... .+. .++..+...|...|++++|++.|++..+..- .++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 34678899999999999999999987642 221 3677788888888999999998888765210 011
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 047992 601 RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPD-SSIWEALLTAC 679 (868)
Q Consensus 601 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~-~~~w~~ll~a~ 679 (868)
...+..+...+...|+.++|..+++...+.. ++.+..+. ..++..+...+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----------------------------~~~~~~~~~~~~~~~la~~~ 139 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA-----------------------------QELKDRIGEGRACWSLGNAY 139 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------------------------HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-----------------------------HHccchHhHHHHHHHHHHHH
Confidence 1233444445555555555555555433211 11111111 22455566667
Q ss_pred HhcCCHHHHHHHHHHHhccCC
Q 047992 680 RIHGNIDLAVLAIERLFDLEP 700 (868)
Q Consensus 680 ~~~~~~~~a~~~~~~~~~l~p 700 (868)
...|+++.|...+++++++..
T Consensus 140 ~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 140 TALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHTCHHHHHHHHHHHHHHHT
T ss_pred HHccCHHHHHHHHHHHHHHHH
Confidence 777888888888777776543
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.76 E-value=3.4e-05 Score=81.48 Aligned_cols=110 Identities=7% Similarity=-0.129 Sum_probs=86.5
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047992 603 TFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIH 682 (868)
Q Consensus 603 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~ 682 (868)
.+......+...|++++|...|+..... .|+.. .+...|+.+++...+.. .+|..+..++...
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~~-------~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVKN-------PCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHHT-------HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHHH-------HHHHHHHHHHHHc
Confidence 3555666788889999999998887652 23321 13344556666554432 3788888889999
Q ss_pred CCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 683 GNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 683 ~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
|+++.|...++++++++|+++.+|..++.+|...|++++|.+..+..
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~a 290 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKA 290 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987754
No 191
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.76 E-value=2.3e-05 Score=68.07 Aligned_cols=105 Identities=12% Similarity=0.066 Sum_probs=67.5
Q ss_pred CChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 047992 615 GMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLA 691 (868)
Q Consensus 615 g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~ 691 (868)
|+.++|+.+|+...+...-.| +...+..+..+|.+.|++++|.+.+++. ...| +..+|..+..++...|+++.|...
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 445555555554443100012 2344666677777778888888777776 3334 355788888888999999999999
Q ss_pred HHHHhccCCCCchhHHHHHHHHhhcCCC
Q 047992 692 IERLFDLEPGDVLIQRLILQIYAICGKP 719 (868)
Q Consensus 692 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 719 (868)
+++++++.|+++.......-+..-.+..
T Consensus 84 ~~~al~~~p~~~~~~~~~~ai~~~~~~l 111 (117)
T 3k9i_A 84 LLKIIAETSDDETIQSYKQAILFYADKL 111 (117)
T ss_dssp HHHHHHHHCCCHHHHHTHHHHHHHTTCT
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999887655544444444433
No 192
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.74 E-value=0.0001 Score=60.11 Aligned_cols=81 Identities=20% Similarity=0.383 Sum_probs=66.8
Q ss_pred hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047992 637 IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYA 714 (868)
Q Consensus 637 ~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 714 (868)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|...++++++++|+++.++..++.+|.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345666777788888888888888776 3333 46688889999999999999999999999999999999999999987
Q ss_pred hcC
Q 047992 715 ICG 717 (868)
Q Consensus 715 ~~g 717 (868)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 193
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.70 E-value=3.4e-05 Score=71.54 Aligned_cols=122 Identities=16% Similarity=0.112 Sum_probs=85.1
Q ss_pred eecHHHHHHHHhcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCC-ChhH
Q 047992 567 ITWNSLICGYVLHGFWHAALDLFDQMKSFG------LKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIP-MIEH 639 (868)
Q Consensus 567 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~ 639 (868)
..|......+.+.|++++|++.|++.+..- -.|+...+ . . ..| ....
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~-----------------~---~------~~~~~~~~ 65 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW-----------------V---E------LDRKNIPL 65 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH-----------------H---H------HHHTHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH-----------------H---H------HHHHHHHH
Confidence 356667777777888888888887776520 01111100 0 0 011 2345
Q ss_pred HHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc-hhHHHHHHHHh
Q 047992 640 YSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDV-LIQRLILQIYA 714 (868)
Q Consensus 640 y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~-~~~~~l~~~y~ 714 (868)
|..+..+|.+.|++++|...+++. ...|+ ...|..+..++...|+++.|...++++++++|+++ .....|..+..
T Consensus 66 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 66 YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 677778888888999988888876 34454 55888999999999999999999999999999998 55666665543
No 194
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.65 E-value=0.00014 Score=60.93 Aligned_cols=63 Identities=21% Similarity=0.176 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 668 DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 668 ~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
+..+|..+..++...|+++.|...++++++++|+++.+|..|+.+|...|++++|.+..+...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 566899999999999999999999999999999999999999999999999999999766543
No 195
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.00046 Score=75.57 Aligned_cols=158 Identities=12% Similarity=0.005 Sum_probs=119.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC
Q 047992 573 ICGYVLHGFWHAALDLFDQMKSFGLKPNR----------------GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM 636 (868)
Q Consensus 573 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~----------------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 636 (868)
...+...|++++|++.|.++.+....... ..+..+...|...|+++++.+++..+.+..+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34567889999999999999884322111 13677888999999999999999988775544443
Q ss_pred hh----HHHHHHHhhhhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcc------
Q 047992 637 IE----HYSAMIDLYGRSGKLEEAMEFIEDM-------PIEPD-SSIWEALLTACRIHGNIDLAVLAIERLFDL------ 698 (868)
Q Consensus 637 ~~----~y~~lvd~l~r~g~~~eA~~~i~~~-------~~~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l------ 698 (868)
.. ....+..++...|.+++|.++++.. ...+. ..++..|...+...|+++.|...+++++..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 32 3444556667789999999988765 22333 347888888999999999999999998764
Q ss_pred CCCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 699 EPGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 699 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
.|.....|..++.+|...|+|++|....+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 23345688999999999999999999766543
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.59 E-value=8.4e-05 Score=64.15 Aligned_cols=75 Identities=15% Similarity=0.101 Sum_probs=54.2
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 656 AMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 656 A~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
|.+.+++. ...| +...|..+...+...|+++.|...++++++++|+++.+|..|+.+|...|++++|....+...
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444443 3334 455777777777888888888888888888888888888888888888888888887666543
No 197
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.57 E-value=0.00019 Score=58.91 Aligned_cols=69 Identities=19% Similarity=0.104 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcCC
Q 047992 666 EPDSSIWEALLTACRIHGN---IDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTR 734 (868)
Q Consensus 666 ~p~~~~w~~ll~a~~~~~~---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 734 (868)
++|+.+|..+..+....++ .+.|...++++++++|+++.+..+|++++...|++++|...++.+.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4567788888888866655 79999999999999999999999999999999999999999999876654
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.50 E-value=6.5e-05 Score=67.80 Aligned_cols=105 Identities=12% Similarity=0.022 Sum_probs=69.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHH
Q 047992 577 VLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEE 655 (868)
Q Consensus 577 ~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~e 655 (868)
.+-+++++|++.+++..+ ..|+. ..+..+..++...|.++.|..... .+++
T Consensus 13 ~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~--------------------------~~~e 64 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQ--------------------------MIQE 64 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHH--------------------------HHHH
T ss_pred HHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHh--------------------------HHHH
Confidence 455667788888888877 56644 555556556665555443333211 2556
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhccCCCCchhHHHH
Q 047992 656 AMEFIEDM-PIEPD-SSIWEALLTACRIH-----------GNIDLAVLAIERLFDLEPGDVLIQRLI 709 (868)
Q Consensus 656 A~~~i~~~-~~~p~-~~~w~~ll~a~~~~-----------~~~~~a~~~~~~~~~l~p~~~~~~~~l 709 (868)
|+..+++. .+.|+ ..+|..|..++... |+++.|...++++++++|+++.+...+
T Consensus 65 Ai~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al 131 (158)
T 1zu2_A 65 AITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 66666665 44554 34777777777765 589999999999999999986554444
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.43 E-value=3.7e-05 Score=69.36 Aligned_cols=85 Identities=14% Similarity=0.039 Sum_probs=66.6
Q ss_pred hhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhccCCCCchhHHHHHHHHhh
Q 047992 648 GRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGN----------IDLAVLAIERLFDLEPGDVLIQRLILQIYAI 715 (868)
Q Consensus 648 ~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~----------~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 715 (868)
.|.+++++|.+.+++. ...| +...|..+..++...++ ++.|+..++++++++|+++.+|..|+++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3566778888887776 3444 44577767776665554 5799999999999999999999999999998
Q ss_pred cC-----------CChhHHHHHHHHHhc
Q 047992 716 CG-----------KPEDALKVRKLEREN 732 (868)
Q Consensus 716 ~g-----------~~~~a~~~~~~m~~~ 732 (868)
.| ++++|.+..+...+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 85 899999987766543
No 200
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.41 E-value=0.00027 Score=75.39 Aligned_cols=63 Identities=14% Similarity=-0.040 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 669 SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 669 ~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
..+|..+..++...|+++.|...++++++++|+++.+|..++.+|...|++++|.+..+...+
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 458888999999999999999999999999999999999999999999999999998776654
No 201
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.32 E-value=0.00094 Score=73.65 Aligned_cols=119 Identities=8% Similarity=-0.067 Sum_probs=73.9
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHhhccCChHHHHHHHHHhhhhc
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN----------------RGTFLSIILAHSLAGMVDLGKKVFCSITECY 631 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 631 (868)
.|+.+...|.+.|++++|+..|++.++ +.|+ ...+..+..++.+.|++++|+..|+...+..
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 444555555556666666666666555 2333 2455666666777777777777777766532
Q ss_pred CCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 047992 632 QIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSS-IWEALLTACRIHGNIDLAVL 690 (868)
Q Consensus 632 ~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~~~~~~a~~ 690 (868)
..+...|..+..+|.+.|++++|.+.++++ .+.|+.. +|..+..++...++.+.+++
T Consensus 348 --p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 348 --SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred --CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 223556677777777888888888888776 5556544 67777777777777776654
No 202
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.23 E-value=0.00045 Score=74.76 Aligned_cols=104 Identities=10% Similarity=-0.014 Sum_probs=73.4
Q ss_pred cCChHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhc-----cCCCCc---hhHHHHHH
Q 047992 650 SGKLEEAMEFIEDM---------PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFD-----LEPGDV---LIQRLILQ 711 (868)
Q Consensus 650 ~g~~~eA~~~i~~~---------~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~-----l~p~~~---~~~~~l~~ 711 (868)
.|+++||++++++. |..|+.. +++.|..+|...|+++.|+..++++++ +.|+++ ..|..|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35566666665543 2334443 788888889999999999999998886 456665 45778899
Q ss_pred HHhhcCCChhHHHHHHHHHhcCCCCCCcccEEEEcCEEEEEEeCCCCCCchHHHHHHHHh
Q 047992 712 IYAICGKPEDALKVRKLERENTRRNSFGQCWIEVKNLVYTFVTGGWSESYSDLLYSWLQN 771 (868)
Q Consensus 712 ~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~ 771 (868)
+|..+|++++|..+.+...+-- .+. -+..||.+.+++..|++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~-~~~-----------------lG~~Hp~~~~l~~~l~~ 432 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIM-EVA-----------------HGKDHPYISEIKQEIES 432 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH-HHH-----------------TCTTCHHHHHHHHHHHC
T ss_pred HHHhccCHHHHHHHHHHHHHHH-HHH-----------------cCCCChHHHHHHHHHhc
Confidence 9999999999999755443211 111 12579999999988863
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.12 E-value=0.00087 Score=56.85 Aligned_cols=65 Identities=11% Similarity=-0.012 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 667 PDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 667 p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
++...|..+...+...|+++.|...++++++++|+++.++..++.+|...|++++|.+..+...+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34567888999999999999999999999999999999999999999999999999998776643
No 204
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.11 E-value=0.0037 Score=64.76 Aligned_cols=137 Identities=18% Similarity=0.174 Sum_probs=73.7
Q ss_pred CCCCceecHHHHHHHHh--cCC---hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCC
Q 047992 562 SSKDIITWNSLICGYVL--HGF---WHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIP 635 (868)
Q Consensus 562 ~~~d~~~~~~li~~~~~--~g~---~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 635 (868)
.+.|...|...+.|... .+. ..+|+.+|++.++ ..|+. ..+..+..++.. ...++ |
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~--------------~~~~~--~ 251 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIV--------------RHSQH--P 251 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--------------HHHHS--C
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH--------------HhccC--C
Confidence 45577788877766543 333 4789999999999 78885 334333333320 00001 1
Q ss_pred ChhHHHHHHHhhhhcCChHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047992 636 MIEHYSAMIDLYGRSGKLEEAMEFIEDMPI-EPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYA 714 (868)
Q Consensus 636 ~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~-~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 714 (868)
..... .-.+.+|.+-...++. +.++.+|.++.-.....|+++.|...++++++++|+ ..+|++++.+|.
T Consensus 252 ~~~~~---------~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~ 321 (372)
T 3ly7_A 252 LDEKQ---------LAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYE 321 (372)
T ss_dssp CCHHH---------HHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_pred Cchhh---------HHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHH
Confidence 11000 0011233332233322 233445555555555556666666666666666653 456666666666
Q ss_pred hcCCChhHHHHH
Q 047992 715 ICGKPEDALKVR 726 (868)
Q Consensus 715 ~~g~~~~a~~~~ 726 (868)
-.|++++|.+..
T Consensus 322 ~~G~~~eA~e~~ 333 (372)
T 3ly7_A 322 MKGMNREAADAY 333 (372)
T ss_dssp HTTCHHHHHHHH
T ss_pred HCCCHHHHHHHH
Confidence 666666666644
No 205
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.11 E-value=0.0035 Score=70.81 Aligned_cols=133 Identities=8% Similarity=-0.022 Sum_probs=108.1
Q ss_pred CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCC----------hHHHHHHHHHhhhhcCCCCChhHHHHHHHhhh
Q 047992 580 GFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGM----------VDLGKKVFCSITECYQIIPMIEHYSAMIDLYG 648 (868)
Q Consensus 580 g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~ 648 (868)
...++|++.++++++ +.|+. ..|..--.+..+.|. +++++.+++.+.+... -+...|.--..++.
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p--K~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP--KSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHH
Confidence 345789999999999 78877 445555555666666 8999999999987432 23445666677788
Q ss_pred hcC--ChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 047992 649 RSG--KLEEAMEFIEDM-PIE-PDSSIWEALLTACRIHG-NIDLAVLAIERLFDLEPGDVLIQRLILQIYAIC 716 (868)
Q Consensus 649 r~g--~~~eA~~~i~~~-~~~-p~~~~w~~ll~a~~~~~-~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 716 (868)
+.| ++++|.++++++ ... -|..+|+.-..+....| ..+.+...++++++.+|.|.++|...+.++...
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 889 779999999998 333 46779999999998888 899999999999999999999999999998875
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.02 E-value=0.0025 Score=56.92 Aligned_cols=112 Identities=13% Similarity=-0.035 Sum_probs=65.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhh----cCChH
Q 047992 579 HGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGR----SGKLE 654 (868)
Q Consensus 579 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r----~g~~~ 654 (868)
.++.++|++.|++..+.| .|+.. +...+...+.+++|..+|+...+. -+...+..+..+|.+ .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 345677888888887766 33333 445566666677777777766552 233444555555554 55666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccC
Q 047992 655 EAMEFIEDMPIEPDSSIWEALLTACRI----HGNIDLAVLAIERLFDLE 699 (868)
Q Consensus 655 eA~~~i~~~~~~p~~~~w~~ll~a~~~----~~~~~~a~~~~~~~~~l~ 699 (868)
+|.+++++.--.-++..+..|...+.. .+|.+.|...++++.++.
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 666666655322344455555555554 556666666666665553
No 207
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.92 E-value=0.0016 Score=55.94 Aligned_cols=66 Identities=15% Similarity=0.151 Sum_probs=47.5
Q ss_pred hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 047992 637 IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGD 702 (868)
Q Consensus 637 ~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 702 (868)
...+..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...+++++++.|++
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 86 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR 86 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 344556666666677777777776665 2333 35578888888888899999999999999888854
No 208
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.88 E-value=0.0031 Score=69.43 Aligned_cols=122 Identities=10% Similarity=-0.014 Sum_probs=74.9
Q ss_pred HHhcCChHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHhhccCChHHHHHHHHHhhhhc----C-CCCC-hhHHHH
Q 047992 576 YVLHGFWHAALDLFDQMKSF---GLKPNR----GTFLSIILAHSLAGMVDLGKKVFCSITECY----Q-IIPM-IEHYSA 642 (868)
Q Consensus 576 ~~~~g~~~~A~~l~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~-~~p~-~~~y~~ 642 (868)
+...|++++|+.++++.++. -+-|++ .+++.+..+|...|++++|..+++...+.+ | ..|+ ...|+.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44556666666666665431 122332 355566666667777777777666554422 2 1222 335777
Q ss_pred HHHhhhhcCChHHHHHHHHhC---------CCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHhc
Q 047992 643 MIDLYGRSGKLEEAMEFIEDM---------PIEPDSSIWEALLTAC-RIHGNIDLAVLAIERLFD 697 (868)
Q Consensus 643 lvd~l~r~g~~~eA~~~i~~~---------~~~p~~~~w~~ll~a~-~~~~~~~~a~~~~~~~~~ 697 (868)
|..+|...|++++|+.+++++ |-.|+..-...++.-| ...+.++.|+..+.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888776 3334444333444444 467788889888888755
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.86 E-value=0.0022 Score=51.95 Aligned_cols=63 Identities=19% Similarity=0.254 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 669 SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 669 ~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
...|..+...+...|+++.|...++++++++|+++..+..++.+|...|++++|.+..+...+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 457888888999999999999999999999999999999999999999999999998776644
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.81 E-value=0.0012 Score=71.67 Aligned_cols=108 Identities=15% Similarity=0.137 Sum_probs=73.1
Q ss_pred HhhhhcCChHHHHHHHHhC------CCCC---CHH-HHHHHHHHHHhcCCHHHHHHHHHHHhc-----cCCCCc---hhH
Q 047992 645 DLYGRSGKLEEAMEFIEDM------PIEP---DSS-IWEALLTACRIHGNIDLAVLAIERLFD-----LEPGDV---LIQ 706 (868)
Q Consensus 645 d~l~r~g~~~eA~~~i~~~------~~~p---~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~-----l~p~~~---~~~ 706 (868)
+-+.+.|++++|++++++. -+.| +.. +++.|..+|...|+++.|+..++++++ +.|+++ ..|
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3345667777777776654 1223 222 778888888888999999988888876 345555 446
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHhcCCCCCCcccEEEEcCEEEEEEeCCCCCCchHHHHHHHH
Q 047992 707 RLILQIYAICGKPEDALKVRKLERENTRRNSFGQCWIEVKNLVYTFVTGGWSESYSDLLYSWLQ 770 (868)
Q Consensus 707 ~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~ 770 (868)
..|+.+|...|++++|..+.+...+-- .+. -+..||.+.+++..|.
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~-~~~-----------------lG~~Hp~~~~~~~~l~ 420 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIM-RVT-----------------HGREHSLIEDLILLLE 420 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH-HHH-----------------TCTTSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHH-HHh-----------------cCCCChHHHHHHHHHH
Confidence 778888999999999998655443211 111 1256999888888776
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.81 E-value=0.0041 Score=51.40 Aligned_cols=64 Identities=22% Similarity=0.337 Sum_probs=52.6
Q ss_pred HHHhhhhcCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhH
Q 047992 643 MIDLYGRSGKLEEAMEFIEDM-PIEP-DSS-IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQ 706 (868)
Q Consensus 643 lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 706 (868)
....+.+.|++++|.+.+++. ...| +.. +|..+..++...|+++.|...++++++++|+++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 355667788899998888876 3344 456 788888888999999999999999999999998877
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.74 E-value=0.0046 Score=66.86 Aligned_cols=73 Identities=10% Similarity=0.048 Sum_probs=53.1
Q ss_pred hHHHHHHHhhhhcCChHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhc-----cCCCC
Q 047992 638 EHYSAMIDLYGRSGKLEEAMEFIEDM---------PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFD-----LEPGD 702 (868)
Q Consensus 638 ~~y~~lvd~l~r~g~~~eA~~~i~~~---------~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~-----l~p~~ 702 (868)
.+++.+..+|...|++++|+.+++++ |..|+.. .++.|...|...|++++|+..++++++ +.|++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~H 420 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH 420 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34566666777777777777766654 3445554 788889999999999999999999886 57888
Q ss_pred chhHHHHH
Q 047992 703 VLIQRLIL 710 (868)
Q Consensus 703 ~~~~~~l~ 710 (868)
+.+-.+..
T Consensus 421 p~~~~l~~ 428 (433)
T 3qww_A 421 PYISEIKQ 428 (433)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 76554443
No 213
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.70 E-value=0.0027 Score=52.90 Aligned_cols=63 Identities=21% Similarity=0.191 Sum_probs=35.0
Q ss_pred CceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhh
Q 047992 565 DIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITE 629 (868)
Q Consensus 565 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 629 (868)
+...|..+...|...|++++|++.|++.++ ..|+. ..+..+..++...|+.++|...|+...+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444555555566666666666666666655 34432 4445555555556666666665555443
No 214
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.69 E-value=0.013 Score=52.16 Aligned_cols=112 Identities=6% Similarity=-0.105 Sum_probs=92.8
Q ss_pred CChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 047992 615 GMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRI----HGNIDLAVL 690 (868)
Q Consensus 615 g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~----~~~~~~a~~ 690 (868)
++.++|..+|+...+. + .|.. . +..+|...+..++|.+++++.-...++..+..|...+.. .+|.+.|..
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFG--C--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4678999999988763 3 3333 2 888888889999999999998444677788888888877 799999999
Q ss_pred HHHHHhccCCCCchhHHHHHHHHhh----cCCChhHHHHHHHHHhcCC
Q 047992 691 AIERLFDLEPGDVLIQRLILQIYAI----CGKPEDALKVRKLERENTR 734 (868)
Q Consensus 691 ~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~~~ 734 (868)
.++++.+. .++.++..|+.+|.. .+++++|.+..+.--+.|.
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999987 678999999999999 8999999998887776653
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.54 E-value=0.01 Score=64.32 Aligned_cols=72 Identities=22% Similarity=0.154 Sum_probs=48.7
Q ss_pred HHHHHHhhhhcCChHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhc-----cCCCCch
Q 047992 640 YSAMIDLYGRSGKLEEAMEFIEDM---------PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFD-----LEPGDVL 704 (868)
Q Consensus 640 y~~lvd~l~r~g~~~eA~~~i~~~---------~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~-----l~p~~~~ 704 (868)
++.+..+|...|++++|+++.+++ |..|+.. .++.|...+...|+++.|+..++++++ +.|+++.
T Consensus 332 ~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~ 411 (429)
T 3qwp_A 332 LDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSL 411 (429)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChH
Confidence 444555555555555555555443 3445544 678888888899999999999988876 6788887
Q ss_pred hHHHHHH
Q 047992 705 IQRLILQ 711 (868)
Q Consensus 705 ~~~~l~~ 711 (868)
+-.++.+
T Consensus 412 ~~~~~~~ 418 (429)
T 3qwp_A 412 IEDLILL 418 (429)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
No 216
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.35 E-value=2.7e-05 Score=81.62 Aligned_cols=259 Identities=14% Similarity=0.166 Sum_probs=129.4
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHH
Q 047992 123 YTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVY 202 (868)
Q Consensus 123 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 202 (868)
..|..|-.++...++..+|++.|-+ .-|+..|..++.++.+.|.++.-...+..+.+. ..++.+-+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHH
Confidence 3456666666666666666655432 124455666677776666666666555555444 24455667777777
Q ss_pred HHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHH
Q 047992 203 VKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVK 282 (868)
Q Consensus 203 ~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 282 (868)
++.+++.+-..++ ..+|+.-...+..-+...|.++.|.-+|..+.. |.-|...+.+.|++..|.+.-+
T Consensus 127 Ak~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AVdaAr 194 (624)
T 3lvg_A 127 AKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGAR 194 (624)
T ss_dssp HTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSSTTTTT
T ss_pred HhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777765433222 224555556666666666666666665544322 1122222333333333322111
Q ss_pred HHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCC-CC
Q 047992 283 RMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGF-TD 361 (868)
Q Consensus 283 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-~~ 361 (868)
+ .-++.||-.+-.+|+..+.+.-|.-.--.+.-. | .-...++..|...|.+++-..+++..+ |+ ..
T Consensus 195 K------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a--deL~elv~~YE~~G~f~ELIsLlEagl--glErA 261 (624)
T 3lvg_A 195 K------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A--DELEELINYYQDRGYFEELITMLEAAL--GLERA 261 (624)
T ss_dssp T------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTC
T ss_pred h------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---H--HHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCch
Confidence 1 125666666666666666666554433322211 1 112223344445555554444444333 21 23
Q ss_pred CccHHHHHHHHHHcCCCHHHHHHHHHhcC----CC-------CeehHHHHHHHHHhcCChhHHHH
Q 047992 362 DVLVGNSLINMYSKCEELEAAERVFDMIK----DK-------DVYSWNSMIAGYCQAGYCGKAYE 415 (868)
Q Consensus 362 ~~~~~~~li~~y~~~g~~~~A~~vf~~~~----~~-------~~~~~~~li~~~~~~g~~~~A~~ 415 (868)
...+++-|.-.|+|-. +++-.+-++..- -| ....|.-++-.|.+...++.|..
T Consensus 262 HmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 262 HMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp CHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 4455666666666542 222222222111 11 33456666666666666665543
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.23 E-value=0.076 Score=63.18 Aligned_cols=151 Identities=14% Similarity=0.108 Sum_probs=92.4
Q ss_pred HHcCCCHHHHHH-HHHhcC-CCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHH
Q 047992 373 YSKCEELEAAER-VFDMIK-DKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVD 450 (868)
Q Consensus 373 y~~~g~~~~A~~-vf~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 450 (868)
....+++++|.+ ++..++ .. ....++..+.+.|..++|+++.++- ..-.......|++++|.+
T Consensus 609 ~~~~~~~~~a~~~~l~~i~~~~---~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVEGKD---SLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLTLARD 673 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCCCHH---HHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHhcCCchH---HHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHHHHHH
Confidence 345678888877 554444 22 2266677777788888887765321 122345567899999988
Q ss_pred HHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhC
Q 047992 451 LFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRS 530 (868)
Q Consensus 451 ~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~ 530 (868)
+.+.+ .+...|..+...+.+.++++.|.+.|.++.. +..+...+...++.+....+-......|
T Consensus 674 ~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 674 LLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 87766 4567899999999999999999999988753 2233333333455444444433333322
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhc
Q 047992 531 LESSLPVMNSLIDTYAKSGNIVYSRTIFDG 560 (868)
Q Consensus 531 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 560 (868)
. ++.-..+|.++|++++|.+++.+
T Consensus 738 ~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 738 K------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp C------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred c------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 23334445556666666554443
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.19 E-value=0.0072 Score=49.88 Aligned_cols=58 Identities=22% Similarity=0.190 Sum_probs=52.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCch-hHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 675 LLTACRIHGNIDLAVLAIERLFDLEPGDVL-IQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 675 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~-~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
....+...|+++.|...++++++++|+++. .+..++.+|...|++++|.+..+...+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 445677889999999999999999999999 9999999999999999999988766544
No 219
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.14 E-value=0.00064 Score=71.46 Aligned_cols=213 Identities=13% Similarity=0.115 Sum_probs=140.5
Q ss_pred ccCCCCcchHHHHHHHHhCCChhHHHHHHHHHhhcCCCCCcccHHHHHHHHhccCChHHHHHHHHHh-hhcCCCChhhhh
Q 047992 17 TKKSNPRFRDTHLDFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFL-NLVTEIDVFVKT 95 (868)
Q Consensus 17 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~-~~~~~~~~~~~~ 95 (868)
.+...|.+|+.+..+....+...+|++.|- + .-|+..|..++.++.+.|..+...+.+... +. ..++.+=+
T Consensus 49 ~~~n~p~VWs~LgkAqL~~~~v~eAIdsyI---k---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDt 120 (624)
T 3lvg_A 49 ERCNEPAVWSQLAKAQLQKGMVKEAIDSYI---K---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVET 120 (624)
T ss_dssp SSCCCCCCSSSHHHHTTTSSSCTTTTTSSC---C---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTH
T ss_pred HHhCCccHHHHHHHHHHccCchHHHHHHHH---h---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHH
Confidence 346778899999999999999999977652 1 236778999999999999998888777655 33 45667888
Q ss_pred HHHHHHHhcCChhHHHHHHhhcCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCC--------------------CCC
Q 047992 96 KLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELFFLMVQDG--------------------LFP 155 (868)
Q Consensus 96 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--------------------~~p 155 (868)
.|+-+|+|.+++.+-.+.+. .||+.--..+-.-+...|.++.|.-+|..+..-. ..-
T Consensus 121 eLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 121 ELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999998776444332 3555555555666666666666665555432211 124
Q ss_pred CcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcC---CCChhhHHHHHHH
Q 047992 156 DDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMD---EKDGVAWNSMISG 232 (868)
Q Consensus 156 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~d~~~~~~li~~ 232 (868)
+..||.-+-.+|...++++.|...--.++-. +.-...|+..|-..|-+++-..+++.-. +...-.|+-|.-.
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaIL 272 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL 272 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 5668888888888888877665443333321 1122345666777777777777776543 2355567777666
Q ss_pred HHhcCChhHHHHHH
Q 047992 233 YFQIGENDEAHRLF 246 (868)
Q Consensus 233 ~~~~g~~~~A~~l~ 246 (868)
|++- ++++..+.+
T Consensus 273 YsKY-~PeKlmEHl 285 (624)
T 3lvg_A 273 YSKF-KPQKMREHL 285 (624)
T ss_dssp HHSS-CTTHHHHHH
T ss_pred HHhc-CHHHHHHHH
Confidence 6665 344443333
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.98 E-value=0.0096 Score=58.99 Aligned_cols=88 Identities=13% Similarity=0.080 Sum_probs=66.6
Q ss_pred ChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHhccCCCC-chhHHHHHHHHhhc-CCCh
Q 047992 652 KLEEAMEFIEDM-PIEPD---SSIWEALLTACRI-----HGNIDLAVLAIERLFDLEPGD-VLIQRLILQIYAIC-GKPE 720 (868)
Q Consensus 652 ~~~eA~~~i~~~-~~~p~---~~~w~~ll~a~~~-----~~~~~~a~~~~~~~~~l~p~~-~~~~~~l~~~y~~~-g~~~ 720 (868)
.+.+|...+++. .+.|+ ...|..|...|.. -|+.+.|++.+++++++.|+. ..+++.++..|+.. |+.+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 456666666666 55666 5577777777776 489999999999999999974 99999999988884 8899
Q ss_pred hHHHHHHHHHhcCCCCCCc
Q 047992 721 DALKVRKLERENTRRNSFG 739 (868)
Q Consensus 721 ~a~~~~~~m~~~~~~k~~g 739 (868)
++.+..+....-..+..|+
T Consensus 258 ~a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHHcCCCCCCCC
Confidence 9888777666555544454
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.96 E-value=0.028 Score=58.18 Aligned_cols=40 Identities=8% Similarity=-0.013 Sum_probs=34.1
Q ss_pred HHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcC
Q 047992 694 RLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENT 733 (868)
Q Consensus 694 ~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 733 (868)
..++++|.++.+|..++.++...|++++|....+...+.+
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln 307 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 3457889999999999999999999999999877776654
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.88 E-value=0.025 Score=46.08 Aligned_cols=76 Identities=16% Similarity=0.054 Sum_probs=58.2
Q ss_pred CCChhHHHHHHHhhhhcCC---hHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHH
Q 047992 634 IPMIEHYSAMIDLYGRSGK---LEEAMEFIEDM-PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRL 708 (868)
Q Consensus 634 ~p~~~~y~~lvd~l~r~g~---~~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~ 708 (868)
.++.+.+..+..++..++. .++|..++++. ...|+.. .+..|...+...|+++.|...++++++.+|. +.....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~ 81 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVT 81 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHH
Confidence 3456778888887765544 79999999987 5566544 7777778889999999999999999999999 444444
Q ss_pred HH
Q 047992 709 IL 710 (868)
Q Consensus 709 l~ 710 (868)
+.
T Consensus 82 i~ 83 (93)
T 3bee_A 82 II 83 (93)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.77 E-value=0.04 Score=46.02 Aligned_cols=72 Identities=15% Similarity=0.168 Sum_probs=53.6
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHH
Q 047992 639 HYSAMIDLYGRSGKLEEAMEFIEDM-----P----IEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLI 709 (868)
Q Consensus 639 ~y~~lvd~l~r~g~~~eA~~~i~~~-----~----~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l 709 (868)
.+-.|...+.+.|+++.|...++.+ + -.+...++..|..++...|+++.|...++++++++|+++.+...+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 3445566666666666666666554 1 123456889999999999999999999999999999998775555
Q ss_pred H
Q 047992 710 L 710 (868)
Q Consensus 710 ~ 710 (868)
.
T Consensus 87 ~ 87 (104)
T 2v5f_A 87 K 87 (104)
T ss_dssp H
T ss_pred H
Confidence 4
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.31 E-value=0.052 Score=48.25 Aligned_cols=40 Identities=15% Similarity=0.023 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 047992 671 IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLIL 710 (868)
Q Consensus 671 ~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 710 (868)
.+-.|.-+|.+.||++.|.+.++++++++|+|..+..+..
T Consensus 73 ~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~ 112 (152)
T 1pc2_A 73 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELER 112 (152)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 5556777889999999999999999999999877666553
No 225
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.16 E-value=0.25 Score=58.56 Aligned_cols=154 Identities=12% Similarity=0.047 Sum_probs=100.6
Q ss_pred HHHHcCChHHHHH-HHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHH
Q 047992 201 VYVKCGKLIWARR-FFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAME 279 (868)
Q Consensus 201 ~y~~~g~~~~A~~-~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 279 (868)
.....++++.|.+ ++..++. ......++..+.+.|.+++|+++.+.-. .-.......|++++|.+
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARD 673 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHH
T ss_pred HHHHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHH
Confidence 3345688888887 6654441 1223777777888888888887663221 11345567899999988
Q ss_pred HHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCC
Q 047992 280 MVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGF 359 (868)
Q Consensus 280 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~ 359 (868)
+.+.+. +...|..+...+.+.++++.|.+.|.++.+ |..+...+...++.+....+-..+...|
T Consensus 674 ~~~~~~------~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~- 737 (814)
T 3mkq_A 674 LLTDES------AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG- 737 (814)
T ss_dssp HHTTCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT-
T ss_pred HHHhhC------cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 866543 667899999999999999999999998842 3445555555666665555554444443
Q ss_pred CCCccHHHHHHHHHHcCCCHHHHHHHHHhc
Q 047992 360 TDDVLVGNSLINMYSKCEELEAAERVFDMI 389 (868)
Q Consensus 360 ~~~~~~~~~li~~y~~~g~~~~A~~vf~~~ 389 (868)
-++.....|.++|++++|.+++..+
T Consensus 738 -----~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 738 -----KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp -----CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred -----chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1344445566677777777665443
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.85 E-value=0.4 Score=47.57 Aligned_cols=112 Identities=13% Similarity=0.089 Sum_probs=70.7
Q ss_pred hcCCHHHHHHHHhcCCCCCc--eecHHHHHH-HHhc--CC------hHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhh
Q 047992 547 KSGNIVYSRTIFDGMSSKDI--ITWNSLICG-YVLH--GF------WHAALDLFDQMKSFGLKPN---RGTFLSIILAHS 612 (868)
Q Consensus 547 k~g~~~~A~~~f~~~~~~d~--~~~~~li~~-~~~~--g~------~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~ 612 (868)
+.|+..+-.+.+.+..+.|+ ..|..++.+ ++.. |. ..+|..++++.++ +.|+ ...+..+...|.
T Consensus 133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~ 210 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYA 210 (301)
T ss_dssp TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHH
T ss_pred HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHH
Confidence 34555555555666655444 467766653 3332 32 3577777888887 6777 355666666666
Q ss_pred c-----cCChHHHHHHHHHhhhhcCCCC--ChhHHHHHHHhhhhc-CChHHHHHHHHhC
Q 047992 613 L-----AGMVDLGKKVFCSITECYQIIP--MIEHYSAMIDLYGRS-GKLEEAMEFIEDM 663 (868)
Q Consensus 613 ~-----~g~~~~a~~~~~~m~~~~~~~p--~~~~y~~lvd~l~r~-g~~~eA~~~i~~~ 663 (868)
. .|+.++|.++|+...+ +.| ++.++..+.+.|.+. |+.++|.+.+++.
T Consensus 211 ~vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 211 AAPESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp HSCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred hCCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6 3788888888877765 455 266666677777663 7777777776665
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.80 E-value=0.26 Score=44.95 Aligned_cols=74 Identities=23% Similarity=0.366 Sum_probs=51.7
Q ss_pred HhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHH
Q 047992 645 DLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALK 724 (868)
Q Consensus 645 d~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 724 (868)
++-...|+++.|.++.+.+ .+...|..|...+..+||++.|++++.++- .+..|+-+|...|+-+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~--------D~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL---NDSITWERLIQEALAQGNASLAEMIYQTQH--------SFDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT--------CHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh---CCHHHHHHHHHHHHHcCChHHHHHHHHHhC--------CHHHHHHHHHHhCCHHHHHH
Confidence 4455678888888888775 467788888888888888888888888763 34455556666666555554
Q ss_pred HHHHH
Q 047992 725 VRKLE 729 (868)
Q Consensus 725 ~~~~m 729 (868)
+-+.-
T Consensus 82 la~iA 86 (177)
T 3mkq_B 82 MQNIA 86 (177)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.62 E-value=3.1 Score=35.59 Aligned_cols=139 Identities=12% Similarity=0.029 Sum_probs=84.5
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHH
Q 047992 578 LHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAM 657 (868)
Q Consensus 578 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~ 657 (868)
-.|..++..++..+.... .+..-++-++.-...+-+-+--.+.++++-+-+.+.| +|++....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~--------------C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHh--------------hhcHHHHH
Confidence 456667777777766552 1222222222222222333334445555544444433 34444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcCCC
Q 047992 658 EFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRR 735 (868)
Q Consensus 658 ~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 735 (868)
+-+-.+. .+.....-.|......|.-|.-.++...++.-+|-+++..+-+++.|.+.|.-.+|.++++..=++|++
T Consensus 82 ~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4443332 122223345667778899999999998887777778899999999999999999999999888888875
No 229
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.56 E-value=0.58 Score=53.61 Aligned_cols=53 Identities=13% Similarity=-0.075 Sum_probs=49.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 677 TACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 677 ~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
.-|...|+++.|..+++++...-|.+..+|..|+.+|...|+|+.|.-....+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34677899999999999999999999999999999999999999999987766
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.08 E-value=1.5 Score=39.94 Aligned_cols=104 Identities=17% Similarity=0.249 Sum_probs=72.9
Q ss_pred HHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHH
Q 047992 199 LAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAM 278 (868)
Q Consensus 199 i~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 278 (868)
......+|+++.|..+.+++ .+...|..+.......|+++-|.+.|..... +..+.-.|.-.|+.+.-.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 34456778888888877766 4567788888888888888888888877664 556666677777776666
Q ss_pred HHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHH
Q 047992 279 EMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEM 319 (868)
Q Consensus 279 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 319 (868)
++-+....+| -+|.....+...|+++++.++|.+.
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 5555544332 3566666677778888888777554
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.13 E-value=0.99 Score=38.48 Aligned_cols=39 Identities=15% Similarity=0.030 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 047992 672 WEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLIL 710 (868)
Q Consensus 672 w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 710 (868)
.-.|.-+|.+.|+++.|.+..+.+++.+|+|..+..+..
T Consensus 77 lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~ 115 (126)
T 1nzn_A 77 VFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELER 115 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 344666788999999999999999999999877766654
No 232
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=90.38 E-value=0.92 Score=40.21 Aligned_cols=83 Identities=12% Similarity=-0.011 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC---CHHHHHHHHhcCCCCC-----ceecHHHHHHHHhcCChHHHHH
Q 047992 516 SNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSG---NIVYSRTIFDGMSSKD-----IITWNSLICGYVLHGFWHAALD 587 (868)
Q Consensus 516 ~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g---~~~~A~~~f~~~~~~d-----~~~~~~li~~~~~~g~~~~A~~ 587 (868)
+...++-+....+.+. ++..+...+..++.+.. +++++..+|+.....+ ...+..+.-+|.+.|++++|++
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3344444444444333 45555556666666666 4556666666543222 3355566667777888888888
Q ss_pred HHHHHHHCCCCCCH
Q 047992 588 LFDQMKSFGLKPNR 601 (868)
Q Consensus 588 l~~~m~~~g~~p~~ 601 (868)
.++++++ +.|+.
T Consensus 93 y~~~lL~--ieP~n 104 (152)
T 1pc2_A 93 YVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHH--HCTTC
T ss_pred HHHHHHh--cCCCC
Confidence 8888777 67754
No 233
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.29 E-value=20 Score=36.30 Aligned_cols=166 Identities=12% Similarity=0.071 Sum_probs=92.7
Q ss_pred hhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHH----HHhhcCCCCCCHHhHHHHH
Q 047992 432 WNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVF----RKMQSSCFYPNCVTILSVL 507 (868)
Q Consensus 432 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll 507 (868)
|.++..-|.+.+++++|++++..- ...+.+.|+..-|.++- +-..+.++++|..+..-++
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G----------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV----------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH----------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH----------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 345556677888888888876654 23345555554443333 3344556777776666666
Q ss_pred HHHhchhch--H---HHHHHHHHHHHhCC--CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcC
Q 047992 508 PACAYLVAS--N---KVKEIHGCVLRRSL--ESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHG 580 (868)
Q Consensus 508 ~a~~~~~~~--~---~~~~i~~~~~~~~~--~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g 580 (868)
..+.....- + -..+....-.+.|- .-|+.+...+...|.+.|++.+|+.-|-.-..+.+..+..|+.-+...+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 555444321 1 12223333344442 2488899999999999999999999885322222345544443333332
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHhhccCChHHHHHHHHHhhh
Q 047992 581 FWHAALDLFDQMKSFGLKPNRGTFL-SIILAHSLAGMVDLGKKVFCSITE 629 (868)
Q Consensus 581 ~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~ 629 (868)
...++ -.|. -.+--|...|.+..|...|+...+
T Consensus 182 ~~~e~----------------dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 182 ESHTA----------------PLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp CGGGH----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCccH----------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 21111 1221 112234456788888887766554
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=88.37 E-value=1.6 Score=38.16 Aligned_cols=108 Identities=12% Similarity=0.117 Sum_probs=67.4
Q ss_pred CCCCCceecHHHHHHHHhcCCh------HHHHHHHHHHHHCCCCCCHH----HHHHHHH---HhhccCChHHHHHHHHHh
Q 047992 561 MSSKDIITWNSLICGYVLHGFW------HAALDLFDQMKSFGLKPNRG----TFLSIIL---AHSLAGMVDLGKKVFCSI 627 (868)
Q Consensus 561 ~~~~d~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~~----t~~~ll~---a~~~~g~~~~a~~~~~~m 627 (868)
|.+.|..+|-..+.-.-..|+. ++.+++|++.... ++|+.. .|.-+.- .+...+++++|+++|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4466788888888888877888 7888888888774 666531 1111100 011124555555555544
Q ss_pred hhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 047992 628 TECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDV 703 (868)
Q Consensus 628 ~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 703 (868)
.+. .. .+ +.+|-....--.++||++.|+++..+++.+.|...
T Consensus 87 ~~~-------------------hK------------kF---AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 87 RAN-------------------CK------------KF---AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHH-------------------CT------------TB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHH-------------------hH------------HH---HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 331 00 12 55777777767788999999999999999888654
No 235
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=87.12 E-value=1.7 Score=35.76 Aligned_cols=62 Identities=15% Similarity=-0.026 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccC-------CCCchhHHHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 670 SIWEALLTACRIHGNIDLAVLAIERLFDLE-------PGDVLIQRLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 670 ~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~-------p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
.-.-.|...+...|+++.|..-++++++.. +..+..|..|+..|.+.|++++|....+....
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 344568888899999999999999999853 34567799999999999999999998776643
No 236
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.29 E-value=5.5 Score=32.03 Aligned_cols=68 Identities=22% Similarity=0.235 Sum_probs=49.6
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcCCC
Q 047992 656 AMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRR 735 (868)
Q Consensus 656 A~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 735 (868)
++.-+-.+..-|++.+..+.|.|||+-+|+..|.+.+|-+-..-.+....|-.+. .+++-.+.+.||.
T Consensus 32 glN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l------------qElkPtl~ELGI~ 99 (109)
T 1v54_E 32 GMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI------------QELRPTLNELGIS 99 (109)
T ss_dssp HHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH------------HHHHHHHHHHTCC
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH------------HHHhhHHHHhCCC
Confidence 3333444567899999999999999999999999999988644333344454433 3577777888875
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=86.11 E-value=4.2 Score=35.64 Aligned_cols=100 Identities=8% Similarity=0.069 Sum_probs=50.9
Q ss_pred CCChhhHHHHHHHHHhcCCh------hHHHHHHHHHHHcCCccChh-h---HHHHHHHH---HhcCChHHHHHHHHHHHh
Q 047992 220 EKDGVAWNSMISGYFQIGEN------DEAHRLFDKMCREEIKLGVV-T---FNILIRSY---NQLGQCDVAMEMVKRMES 286 (868)
Q Consensus 220 ~~d~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~~-~---~~~li~~~---~~~g~~~~A~~~~~~m~~ 286 (868)
..|..+|-..+...-+.|++ ++.+++|++... .++|+.. . |--|.--| ...++.++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45777888888888888888 777788887765 3344321 1 11111111 123556666666665544
Q ss_pred cCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047992 287 LGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSF 321 (868)
Q Consensus 287 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 321 (868)
.+-+- ...|-....--.++|+...|..++.....
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 31111 22233333333344444444444444433
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=85.59 E-value=16 Score=31.25 Aligned_cols=67 Identities=9% Similarity=-0.051 Sum_probs=47.4
Q ss_pred CeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCC
Q 047992 292 DVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGF 359 (868)
Q Consensus 292 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~ 359 (868)
+.......++.+..+|.-++-.+++..+.. +.+|++.....+..||.+.|+...+.+++.++-+.|+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 455566667777777777777777777542 4566777777777888888888888877777777664
No 239
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=85.18 E-value=5 Score=34.34 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 047992 671 IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLIL 710 (868)
Q Consensus 671 ~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 710 (868)
.+--|.-|+.+.||++.|++..+.+++.+|+|..+-.+..
T Consensus 80 ~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~ 119 (134)
T 3o48_A 80 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 119 (134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 4555777889999999999999999999999876555443
No 240
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=82.79 E-value=9.6 Score=33.06 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHH
Q 047992 673 EALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLI 709 (868)
Q Consensus 673 ~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l 709 (868)
--|.-++.+.||++.|++..+.+++.+|+|..+-.+.
T Consensus 81 YyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk 117 (144)
T 1y8m_A 81 YYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 117 (144)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 3456678899999999999999999999987665554
No 241
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.20 E-value=11 Score=32.13 Aligned_cols=69 Identities=23% Similarity=0.283 Sum_probs=50.8
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 654 EEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFD-LEPGDVLIQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 654 ~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~-l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
..++.-+-.+..-|++.+..+-|.|||+.+|+..|.+.+|-+-. .++. ...|-.+. .+++-.+.+.
T Consensus 73 rrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~-~~iY~y~l------------qElkPtl~EL 139 (152)
T 2y69_E 73 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH-KEIYPYVI------------QELRPTLNEL 139 (152)
T ss_dssp HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-TTHHHHHH------------HHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCc-hhhHHHHH------------HHHhhHHHHh
Confidence 33444444557789999999999999999999999999998864 3343 44454433 3577778888
Q ss_pred CCC
Q 047992 733 TRR 735 (868)
Q Consensus 733 ~~~ 735 (868)
||.
T Consensus 140 GI~ 142 (152)
T 2y69_E 140 GIS 142 (152)
T ss_dssp TCC
T ss_pred CCC
Confidence 875
No 242
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.12 E-value=48 Score=33.27 Aligned_cols=166 Identities=8% Similarity=0.100 Sum_probs=88.1
Q ss_pred hHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHH----HHHhhcCCCCCCHHhHHHHHHH
Q 047992 434 VLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGV----FRKMQSSCFYPNCVTILSVLPA 509 (868)
Q Consensus 434 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a 509 (868)
++..-|.+.+++++|++++..- ...+.+.|+..-|.++ .+-..+.+++++......++.-
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~g----------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQG----------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH----------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHH----------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3444556666666666665443 1223444444433332 3333344566666555555544
Q ss_pred Hhchhc-----hHHHHHHHHHHHHhCCC--CChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhc---
Q 047992 510 CAYLVA-----SNKVKEIHGCVLRRSLE--SSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLH--- 579 (868)
Q Consensus 510 ~~~~~~-----~~~~~~i~~~~~~~~~~--~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~--- 579 (868)
+..... ..-.........+.|-. .|+.+...+...|.+.|++.+|+.-|-.-...|...+..|+.-+...
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~ 181 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDD 181 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCC
Confidence 433221 12222333333343322 38889999999999999999999988643323454555554444333
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhh
Q 047992 580 GFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITEC 630 (868)
Q Consensus 580 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 630 (868)
|...++--..-+ ++| -+.-.|.+..|...|+...+.
T Consensus 182 ~~~~e~dlf~~R--------------aVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 182 IEDSTVAEFFSR--------------LVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CCHHHHHHHHHH--------------HHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHH--------------HHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 433332111111 111 234568888998888876654
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.06 E-value=52 Score=35.16 Aligned_cols=34 Identities=12% Similarity=0.188 Sum_probs=24.0
Q ss_pred CChhHHHHHHHHHHhc--CCHHHHHHHHhcCCCCCc
Q 047992 533 SSLPVMNSLIDTYAKS--GNIVYSRTIFDGMSSKDI 566 (868)
Q Consensus 533 ~~~~~~~~Li~~y~k~--g~~~~A~~~f~~~~~~d~ 566 (868)
++...+..|+.+|... .+++...+.|.....++.
T Consensus 291 ~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~ 326 (445)
T 4b4t_P 291 KKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDD 326 (445)
T ss_dssp HHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCC
T ss_pred cccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccc
Confidence 4667788888888764 457778888876655443
No 244
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.94 E-value=53 Score=32.99 Aligned_cols=167 Identities=11% Similarity=0.117 Sum_probs=99.5
Q ss_pred hhHHHHHHHhcCChhHHHHHHhhcCCCCceeHHHHHHHHHhCCChhHHHHH----HHHhHHCCCCCCcchHHHHHHHhhC
Q 047992 94 KTKLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRWREVVEL----FFLMVQDGLFPDDFLFPKILQACGN 169 (868)
Q Consensus 94 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l----~~~m~~~g~~p~~~t~~~ll~~~~~ 169 (868)
+.++..-|.+.+++++|..++.. -...+.+.|+...|-++ .+-..+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 44567778888888888887643 12345566777666554 4444566788888777777777655
Q ss_pred CCC--h---HHHHHHHHHHHHhCC--CCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhc---CCh
Q 047992 170 CGD--F---EAGKLMHSLVIKLGM--SCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQI---GEN 239 (868)
Q Consensus 170 ~~~--~---~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~---g~~ 239 (868)
... . .-.......-.+.|- .-|+.....+...|.+.|++.+|+..|-.-...|...+..|+--+.+. |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 331 1 122222233333332 246778888889999999999999877632222455555555554444 444
Q ss_pred hHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047992 240 DEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMES 286 (868)
Q Consensus 240 ~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 286 (868)
.++--..-+ .+-.|.-.|+...|..+|+...+
T Consensus 185 ~e~dlf~~R---------------aVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 185 STVAEFFSR---------------LVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHH---------------HHHHHHHTTBHHHHHHHHHHHHH
T ss_pred chHHHHHHH---------------HHHHHHHhcCHHHHHHHHHHHHH
Confidence 443222222 12235566788888888776643
No 245
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=79.64 E-value=11 Score=30.21 Aligned_cols=61 Identities=15% Similarity=0.215 Sum_probs=45.6
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 047992 542 IDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFL 605 (868)
Q Consensus 542 i~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 605 (868)
+..+...|++++|..+.+....||+++|-++- -.+.|..+++..-+.++...| .|....|.
T Consensus 47 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 47 LSSLMNRGDYASALQQGNKLAYPDLEPWLALC--EYRLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHH--HHHHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 34456789999999999999999999998774 356788888888777776654 44445554
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.07 E-value=72 Score=34.05 Aligned_cols=94 Identities=13% Similarity=0.107 Sum_probs=65.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHhhccCChHHHHHHHHHhhhhc-CCCCC----hhH
Q 047992 570 NSLICGYVLHGFWHAALDLFDQMKSF--GLKPNR---GTFLSIILAHSLAGMVDLGKKVFCSITECY-QIIPM----IEH 639 (868)
Q Consensus 570 ~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~----~~~ 639 (868)
..+...|-..|++.+|.+++.++..+ |..+.. ..+.-.+..|...+++.+|..+++.+.... ...+. ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34667777888888888888887642 222221 234455667888999999999988875322 22222 346
Q ss_pred HHHHHHhhhhcCChHHHHHHHHhC
Q 047992 640 YSAMIDLYGRSGKLEEAMEFIEDM 663 (868)
Q Consensus 640 y~~lvd~l~r~g~~~eA~~~i~~~ 663 (868)
|.|++.++...+++.+|...+...
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 889999999999999998877664
No 247
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.01 E-value=10 Score=30.29 Aligned_cols=61 Identities=16% Similarity=0.153 Sum_probs=46.9
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 047992 542 IDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFL 605 (868)
Q Consensus 542 i~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 605 (868)
+..+...|++++|..+.+....||+++|-++- -.+.|..+++..-+.++..+| .|....|.
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 34456789999999999999999999998774 457888888888887887764 45445554
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=78.63 E-value=8 Score=34.55 Aligned_cols=29 Identities=14% Similarity=0.272 Sum_probs=17.4
Q ss_pred hHHHHHHHhhhhcCChHHHHHHHHhCCCC
Q 047992 638 EHYSAMIDLYGRSGKLEEAMEFIEDMPIE 666 (868)
Q Consensus 638 ~~y~~lvd~l~r~g~~~eA~~~i~~~~~~ 666 (868)
+.---+..+|...|+.++|+..++..|.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 33333555566667777777777776543
No 249
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.42 E-value=61 Score=32.83 Aligned_cols=166 Identities=16% Similarity=0.106 Sum_probs=98.2
Q ss_pred hhHHHHHHHhcCChhHHHHHHhhcCCCCceeHHHHHHHHHhCCChhHHHHHH----HHhHHCCCCCCcchHHHHHHHhhC
Q 047992 94 KTKLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELF----FLMVQDGLFPDDFLFPKILQACGN 169 (868)
Q Consensus 94 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~----~~m~~~g~~p~~~t~~~ll~~~~~ 169 (868)
+-++..-|.+.+++++|.+++.. =...+.+.|+...|-++- +-+.+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 44556678888899988887643 223455667776665554 445567888888887778777766
Q ss_pred CCChH-HHHHHHH----HHHHhC--CCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCC-hhhHHHHHHHHHhcCChhH
Q 047992 170 CGDFE-AGKLMHS----LVIKLG--MSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKD-GVAWNSMISGYFQIGENDE 241 (868)
Q Consensus 170 ~~~~~-~a~~~~~----~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d-~~~~~~li~~~~~~g~~~~ 241 (868)
...-+ .-..+.. .-.+.| ..-|+.....+...|.+.+++.+|+.-|-- ...+ +..+..|+--+.+.+...+
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il-g~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL-GTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT-SCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh-cCCchHHHHHHHHHHHHHhcCCcc
Confidence 55311 1122222 333444 334677788888899999999999888742 2222 2455555544444433322
Q ss_pred HHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047992 242 AHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMES 286 (868)
Q Consensus 242 A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 286 (868)
+--.+-+ .+-.|.-.+++..|..+|+...+
T Consensus 186 ~dlfiaR---------------aVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 APLYCAR---------------AVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHH---------------HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHH---------------HHHHHHHhCCHHHHHHHHHHHHH
Confidence 2111111 22345566777888777666543
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=77.77 E-value=6.2 Score=31.73 Aligned_cols=60 Identities=10% Similarity=0.037 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHhccCChHHHHHHHHHhhhcCCCChhhhhHHHH
Q 047992 40 EAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFLNLVTEIDVFVKTKLLS 99 (868)
Q Consensus 40 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~li~ 99 (868)
+..+-++.+.....-|++....+.|++|.+.+++..|.++++-++........+|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 455556677777788888888899999988889999988888882222222344555443
No 251
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=77.49 E-value=20 Score=41.08 Aligned_cols=61 Identities=11% Similarity=0.020 Sum_probs=41.0
Q ss_pred ChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHHh
Q 047992 636 MIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSSIWEALLTACRIHG---------NIDLAVLAIERLF 696 (868)
Q Consensus 636 ~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~~w~~ll~a~~~~~---------~~~~a~~~~~~~~ 696 (868)
+..=|..+..+..|.++++||.+.++.. ..+=++..|.-||.-|...+ |.+....+.=|+.
T Consensus 612 s~lEWEiLGlla~RL~h~~EA~~a~~~~l~~RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~ 682 (754)
T 4gns_B 612 SGLEWELLGLIMLRTWHWEDAVACLRTSIVARFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKI 682 (754)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHH
Confidence 3334777777777888888888877766 44567777888888776655 5665555554443
No 252
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=76.00 E-value=33 Score=29.10 Aligned_cols=84 Identities=10% Similarity=-0.061 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHH---HHHHHhcCCCCC-c----eecHHHHHHHHhcCChHHHH
Q 047992 515 ASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVY---SRTIFDGMSSKD-I----ITWNSLICGYVLHGFWHAAL 586 (868)
Q Consensus 515 ~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~---A~~~f~~~~~~d-~----~~~~~li~~~~~~g~~~~A~ 586 (868)
.+...++-+......|. ++..+--.+..++.+..+..+ +..+++.+...+ + ...-.+.-|+.+.|++++|.
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 33344444444433333 444444445555555554444 555555444322 1 23344555666666666666
Q ss_pred HHHHHHHHCCCCCCH
Q 047992 587 DLFDQMKSFGLKPNR 601 (868)
Q Consensus 587 ~l~~~m~~~g~~p~~ 601 (868)
+.++.+++ +.|+.
T Consensus 95 ~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 95 KYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHHHHHHH--HCTTC
T ss_pred HHHHHHHH--hCCCC
Confidence 66666666 56644
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=75.99 E-value=9.1 Score=40.30 Aligned_cols=69 Identities=12% Similarity=0.042 Sum_probs=49.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCChHHHHHHHHHhh----hhcCCCCChhHH
Q 047992 570 NSLICGYVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSIILAHSLAGMVDLGKKVFCSIT----ECYQIIPMIEHY 640 (868)
Q Consensus 570 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~y 640 (868)
..++..+...|++.+|+..+..+.. ..| ++..+..++.++...|+..+|++.|+... ++.|+.|..+.-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3455666777888888877777776 455 56677778888888888888888877643 456888887653
No 254
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=74.80 E-value=17 Score=36.44 Aligned_cols=42 Identities=10% Similarity=0.086 Sum_probs=35.3
Q ss_pred HHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 047992 660 IEDMPIEPDSS--IWEALLTACRIHGNIDLAVLAIERLFDLEPG 701 (868)
Q Consensus 660 i~~~~~~p~~~--~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 701 (868)
|...+++|... ++++-++.+.+++|+.-|...+++++++.|.
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 44447777655 7788888899999999999999999999995
No 255
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=74.74 E-value=1.1e+02 Score=34.09 Aligned_cols=164 Identities=7% Similarity=-0.038 Sum_probs=89.5
Q ss_pred HHhCCChhHHHHHHHHHhhcCCCCCcccHHHHHHHHhccCChHHHHHHHHHh-h-hcCCCChhhhhHHHHHHHhcCChhH
Q 047992 32 LCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFL-N-LVTEIDVFVKTKLLSVYAKCGCLDD 109 (868)
Q Consensus 32 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~-~-~~~~~~~~~~~~li~~~~~~g~~~~ 109 (868)
..+.|++..+..+...+......| -..|..+.... ...... ++.+.+ . .+.+....+-+.-+..+++.+++..
T Consensus 16 a~~~~~~~~~~~l~~~l~~~pL~~-yl~y~~l~~~l-~~~~~~---ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~ 90 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDYPLYP-YLEYRQITDDL-MNQPAV---TVTNFVRANPTLPPARTLQSRFVNELARREDWRG 90 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTSTTHH-HHHHHHHHHTG-GGCCHH---HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHhhcCCCcHH-HHHHHHHHhCc-ccCCHH---HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHH
Confidence 345677777666655553221110 11233322222 122333 333444 2 2223333556667777888889988
Q ss_pred HHHHHhhcCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCC
Q 047992 110 AREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMS 189 (868)
Q Consensus 110 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 189 (868)
-...|.. +..+...-.....+....|+..+|......+-..|. .....+..++.... +.|.-
T Consensus 91 ~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~----------------~~g~l 152 (618)
T 1qsa_A 91 LLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWR----------------ASGKQ 152 (618)
T ss_dssp HHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHH----------------HTTCS
T ss_pred HHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHH----------------HCCCC
Confidence 8887766 433333344466677778998888888888776653 23334444444444 33322
Q ss_pred CCcchHHHHHHHHHHcCChHHHHHHHhhcC
Q 047992 190 CVRRVRNSVLAVYVKCGKLIWARRFFESMD 219 (868)
Q Consensus 190 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 219 (868)
.+..++ .-+......|+...|..+...++
T Consensus 153 t~~~~~-~R~~~al~~~~~~~a~~l~~~l~ 181 (618)
T 1qsa_A 153 DPLAYL-ERIRLAMKAGNTGLVTVLAGQMP 181 (618)
T ss_dssp CHHHHH-HHHHHHHHTTCHHHHHHHHHTCC
T ss_pred CHHHHH-HHHHHHHHCCCHHHHHHHHHhCC
Confidence 222222 23455667788888888877774
No 256
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=73.95 E-value=5.4 Score=42.09 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 672 WEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 672 w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
...+..++...|+.+.+...+++++..+|-+...|..|...|...|+..+|.++++..+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44566777888999999999999999999999999999999999999999988755543
No 257
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=73.51 E-value=46 Score=34.75 Aligned_cols=159 Identities=13% Similarity=0.038 Sum_probs=96.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC--------CCceecHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCCHHHHH---
Q 047992 538 MNSLIDTYAKSGNIVYSRTIFDGMSS--------KDIITWNSLICGYVLH-GFWHAALDLFDQMKSFGLKPNRGTFL--- 605 (868)
Q Consensus 538 ~~~Li~~y~k~g~~~~A~~~f~~~~~--------~d~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~--- 605 (868)
...|.+.|.+.|+.++-.+++....+ +....-..++..+... |..+.-+++..+..+-. +-+..+|.
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~~ 100 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 34577888888888888888776643 1223455666666553 33444455555554311 11224442
Q ss_pred ---HHHHHhhccCChHHHHHHHHHhhhhcCCCCC----hhHHHHHHHhhhhcCChHHHHHHHHhC-----CCCCCHHHHH
Q 047992 606 ---SIILAHSLAGMVDLGKKVFCSITECYQIIPM----IEHYSAMIDLYGRSGKLEEAMEFIEDM-----PIEPDSSIWE 673 (868)
Q Consensus 606 ---~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lvd~l~r~g~~~eA~~~i~~~-----~~~p~~~~w~ 673 (868)
-+..-+...|++.+|.+++..+.++..-..+ ++.|..-+.+|...|++.++...+.+. .+.|++.+-.
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 4566778888888888888877765433222 456777778888888888888887665 1224444322
Q ss_pred HH---HH-HHH-hcCCHHHHHHHHHHHhc
Q 047992 674 AL---LT-ACR-IHGNIDLAVLAIERLFD 697 (868)
Q Consensus 674 ~l---l~-a~~-~~~~~~~a~~~~~~~~~ 697 (868)
.+ .| .+. ..+|+..|-..+-.+++
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 22 12 234 57888888887777764
No 258
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=71.01 E-value=1.4 Score=28.16 Aligned_cols=10 Identities=50% Similarity=1.345 Sum_probs=8.6
Q ss_pred CCCccCCCCC
Q 047992 858 KNGQCSCGDY 867 (868)
Q Consensus 858 ~~g~csc~d~ 867 (868)
++|.||||-|
T Consensus 20 ~~~~C~CG~y 29 (42)
T 2l0z_A 20 SLGGCRCGKY 29 (42)
T ss_dssp TTSSBTTTTB
T ss_pred CCceeccccc
Confidence 5899999976
No 259
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=70.95 E-value=78 Score=30.61 Aligned_cols=58 Identities=10% Similarity=0.197 Sum_probs=24.5
Q ss_pred HHHHHHcCChHHHHHHHhhcCC----CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccC
Q 047992 199 LAVYVKCGKLIWARRFFESMDE----KDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLG 257 (868)
Q Consensus 199 i~~y~~~g~~~~A~~~f~~~~~----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 257 (868)
+...+..|+.+-+..+++.... .|...++.+..+ +..+......++++.+.+.|..++
T Consensus 152 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCC
Confidence 3344455565555555544211 122222222222 233444334445555555554443
No 260
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=68.71 E-value=28 Score=31.11 Aligned_cols=57 Identities=5% Similarity=-0.066 Sum_probs=26.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC-CCCCCH-------HHHHHHHHHhhccCChHHHHHHHHHhhh
Q 047992 573 ICGYVLHGFWHAALDLFDQMKSF-GLKPNR-------GTFLSIILAHSLAGMVDLGKKVFCSITE 629 (868)
Q Consensus 573 i~~~~~~g~~~~A~~l~~~m~~~-g~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 629 (868)
+..+..+|.++.|+-+.+.+... +..|+. .++..+..++.+.|.+..|..+|+...+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 44455566666666555554431 122221 1334444455555555555555555433
No 261
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=68.51 E-value=1.4e+02 Score=33.61 Aligned_cols=80 Identities=9% Similarity=0.049 Sum_probs=38.1
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHh---cCCH
Q 047992 369 LINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQ---NGNE 445 (868)
Q Consensus 369 li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~---~g~~ 445 (868)
...++.-+|+++.|...+-+. +.+---.+.-++...|-.... ..+......-...-+..||..|.+ ..+.
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~---~~vdAVH~AIaL~~~gLL~~~----~~lls~~~~~~~lN~arLI~~Yt~~F~~td~ 372 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF---SEMDAVHLAIGLASLKLFKID----SSTRLTKKPKRDIRFANILANYTKSFRYSDP 372 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT---CHHHHHHHHHHHHHTTC---------------------CHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHhhHHHHHHHHHhc---CchhHHHHHHHHHHcCCccCC----CcccccCCCcccccHHHHHHHHHHHhhcCCH
Confidence 344455678888888877655 222222333344444444321 111111000013346677777765 5777
Q ss_pred HHHHHHHHhc
Q 047992 446 DEAVDLFQRM 455 (868)
Q Consensus 446 ~~A~~~f~~m 455 (868)
.+|.++|--+
T Consensus 373 ~~Al~Y~~li 382 (661)
T 2qx5_A 373 RVAVEYLVLI 382 (661)
T ss_dssp HHHHHHHHGG
T ss_pred HHHHHHHHHH
Confidence 8888877766
No 262
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=68.36 E-value=17 Score=29.03 Aligned_cols=77 Identities=14% Similarity=0.015 Sum_probs=54.5
Q ss_pred ChHHHHHHHHHh-hhcCCCChhhhhHHHHHHHhcCChhHHHHHHhhcCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHH
Q 047992 72 SIHLARKLHAFL-NLVTEIDVFVKTKLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELFFLMVQ 150 (868)
Q Consensus 72 ~~~~a~~i~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 150 (868)
.-++|..|-+.+ ..+. ...+.-.-+..+...|++++|..+.+..+.||...|-+|-.+ +.|...++..-+.++-.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 466777777776 4333 222322334466788999999999999999999999888765 55777777777767765
Q ss_pred CC
Q 047992 151 DG 152 (868)
Q Consensus 151 ~g 152 (868)
+|
T Consensus 98 sg 99 (116)
T 2p58_C 98 SQ 99 (116)
T ss_dssp CC
T ss_pred CC
Confidence 55
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=68.29 E-value=16 Score=29.13 Aligned_cols=77 Identities=14% Similarity=-0.010 Sum_probs=55.5
Q ss_pred ChHHHHHHHHHh-hhcCCCChhhhhHHHHHHHhcCChhHHHHHHhhcCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHH
Q 047992 72 SIHLARKLHAFL-NLVTEIDVFVKTKLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELFFLMVQ 150 (868)
Q Consensus 72 ~~~~a~~i~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 150 (868)
.-++|..|-+.+ ..+. ...+.-.-+..+...|++++|..+.+..+.||...|-+|-.+ +.|...++..-+.++-.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 456677777766 4333 222322334466788999999999999999999999888764 67877787777777776
Q ss_pred CC
Q 047992 151 DG 152 (868)
Q Consensus 151 ~g 152 (868)
+|
T Consensus 97 sg 98 (115)
T 2uwj_G 97 SS 98 (115)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 264
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=65.87 E-value=1.3e+02 Score=31.28 Aligned_cols=220 Identities=12% Similarity=0.034 Sum_probs=105.9
Q ss_pred hhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 047992 470 SLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSG 549 (868)
Q Consensus 470 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g 549 (868)
.++..|...|++.+|+.++.++...--+.|..++ + ..++-.-+.+|...|
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~--l----------------------------lev~lle~~~~~~~~ 153 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNL--L----------------------------VEVQLLESKTYHALS 153 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHH--H----------------------------HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchh--H----------------------------HHHHHHHHHHHHHhc
Confidence 4677888888888888888877643111121111 1 112333455566666
Q ss_pred CHHHHHHHHhcCC--------CCCceecHHH--HHHHH-hcCChHHHHHHHHHHHH---CCCCCCHHH--HHHHHHHhhc
Q 047992 550 NIVYSRTIFDGMS--------SKDIITWNSL--ICGYV-LHGFWHAALDLFDQMKS---FGLKPNRGT--FLSIILAHSL 613 (868)
Q Consensus 550 ~~~~A~~~f~~~~--------~~d~~~~~~l--i~~~~-~~g~~~~A~~l~~~m~~---~g~~p~~~t--~~~ll~a~~~ 613 (868)
++..+...+.... +|.+..---+ .-.+. ..+++.+|...|-+..+ .-..|.... ...+|.+...
T Consensus 154 n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~ 233 (394)
T 3txn_A 154 NLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIML 233 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHc
Confidence 6655555554321 1111111111 11233 56777777776666532 101122111 2223333222
Q ss_pred cCChHHHHHHHHH-hhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC--CCCCCHHH---HHHHHHHHHhcCCHHH
Q 047992 614 AGMVDLGKKVFCS-ITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM--PIEPDSSI---WEALLTACRIHGNIDL 687 (868)
Q Consensus 614 ~g~~~~a~~~~~~-m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~--~~~p~~~~---w~~ll~a~~~~~~~~~ 687 (868)
+...+-..++.. ....| ..|.+..+..++.++ +.|++.+..++++.. .+..|+.. |..|...-+
T Consensus 234 -~~r~el~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir------- 303 (394)
T 3txn_A 234 -GQSDDVNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML------- 303 (394)
T ss_dssp -TCGGGHHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH-------
T ss_pred -CCHHHHHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH-------
Confidence 333333333321 12223 456666666666654 567888888888876 35566653 333333222
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcCC
Q 047992 688 AVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTR 734 (868)
Q Consensus 688 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 734 (868)
+.+..+++ .|-..-....++....- ..+++++....|-..|.
T Consensus 304 -~~~L~~i~--~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 304 -EQNLCRII--EPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp -HHHHHHHH--TTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred -HHHHHHHh--HhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 22333333 45544444445444332 34667776666655543
No 265
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=65.82 E-value=1.8e+02 Score=35.50 Aligned_cols=142 Identities=13% Similarity=0.065 Sum_probs=83.5
Q ss_pred HHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---C-Cc---------------
Q 047992 506 VLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSS---K-DI--------------- 566 (868)
Q Consensus 506 ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~-d~--------------- 566 (868)
++..|...+..+.++++... .+.++...-.+..+|..+|+.++|.+.|.+... + +.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 44445555555555544322 344555556677889999999999999987642 1 00
Q ss_pred -------eecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--H--HHHHHHHHhhccCChHHHHHHHHHhhhhcCCCC
Q 047992 567 -------ITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR--G--TFLSIILAHSLAGMVDLGKKVFCSITECYQIIP 635 (868)
Q Consensus 567 -------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 635 (868)
.-|.-++..+-++|.++.++++-+..++..-.-+. . .|..+..++.+.|++++|...+-++... .-
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~~ 969 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---PL 969 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---SS
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---HH
Confidence 01344566677778888888777766653211111 1 3456667777788888887777666431 12
Q ss_pred ChhHHHHHHHhhhhcCChHH
Q 047992 636 MIEHYSAMIDLYGRSGKLEE 655 (868)
Q Consensus 636 ~~~~y~~lvd~l~r~g~~~e 655 (868)
..+...-+|..++..|.+++
T Consensus 970 r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHhCCChhh
Confidence 23345555555555555443
No 266
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=65.74 E-value=1.7e+02 Score=32.59 Aligned_cols=124 Identities=9% Similarity=-0.019 Sum_probs=74.3
Q ss_pred CChHHHHHHHHHHHHCC-CCCCHHHH--HHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHH
Q 047992 580 GFWHAALDLFDQMKSFG-LKPNRGTF--LSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEA 656 (868)
Q Consensus 580 g~~~~A~~l~~~m~~~g-~~p~~~t~--~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA 656 (868)
.+.+.|..+|......+ +.+..... ..+.......+...++...+...... .++.....-.+....|.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 37789999998886533 33322221 22222333445466777777765432 23322233333344578999999
Q ss_pred HHHHHhCCCCC-CHHHHHH-HHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 047992 657 MEFIEDMPIEP-DSSIWEA-LLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLIL 710 (868)
Q Consensus 657 ~~~i~~~~~~p-~~~~w~~-ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 710 (868)
...|+.|+..+ +..-|.- +..+....|+.+.|...++++.+ | .+.|-.|+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~lA 356 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--Q--RGFYPMVA 356 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHHH
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CChHHHHH
Confidence 99999996543 2222221 23355678999999999999986 3 35676664
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=65.28 E-value=16 Score=31.20 Aligned_cols=35 Identities=14% Similarity=0.091 Sum_probs=16.9
Q ss_pred hhcCCCCCcccHHHHHHHHhccCChHHHHHHHHHh
Q 047992 49 ATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFL 83 (868)
Q Consensus 49 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~ 83 (868)
...+.-|++......|++|.+.+++..|.++++-+
T Consensus 80 ~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~v 114 (152)
T 2y69_E 80 VGYDLVPEPKIIDAALRACRRLNDFASAVRILEVV 114 (152)
T ss_dssp TTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33344444444555555555555555555554444
No 268
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=62.09 E-value=56 Score=31.81 Aligned_cols=117 Identities=11% Similarity=0.140 Sum_probs=55.9
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCCh----hHHHHHHHhhhhc
Q 047992 576 YVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMI----EHYSAMIDLYGRS 650 (868)
Q Consensus 576 ~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~y~~lvd~l~r~ 650 (868)
..+.|..++|++....-++ -.|.. ..-..+..-++-.|+++.|.+-++...+ +.|+. ..|..+|.+
T Consensus 7 ll~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH----
T ss_pred HHhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH----
Confidence 3455666666666666555 34433 2223334445556666666666655544 22322 222222221
Q ss_pred CChHHHH-HHHHh--CCCCC-CHHHH-HHHHHHHH--hcCCHHHHHHHHHHHhccCCCCch
Q 047992 651 GKLEEAM-EFIED--MPIEP-DSSIW-EALLTACR--IHGNIDLAVLAIERLFDLEPGDVL 704 (868)
Q Consensus 651 g~~~eA~-~~i~~--~~~~p-~~~~w-~~ll~a~~--~~~~~~~a~~~~~~~~~l~p~~~~ 704 (868)
|.+. ++|.. .|.-+ ++.-| ..|+.+.. ..|+.+.|...-+++++.-|..++
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1111 12211 12111 11224 33444433 457888888888888877776655
No 269
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=60.55 E-value=97 Score=37.83 Aligned_cols=53 Identities=19% Similarity=0.185 Sum_probs=25.7
Q ss_pred HHHHHHhhhhcCChHHHHHHHHhC----CCCCC-H--HHHHHHHHHHHhcCCHHHHHHHH
Q 047992 640 YSAMIDLYGRSGKLEEAMEFIEDM----PIEPD-S--SIWEALLTACRIHGNIDLAVLAI 692 (868)
Q Consensus 640 y~~lvd~l~r~g~~~eA~~~i~~~----~~~p~-~--~~w~~ll~a~~~~~~~~~a~~~~ 692 (868)
|.-++.++.+.|.++.+.++.+.+ +-.++ . ..|..+..++..-|+++.|-.+.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 445555566666666665554433 11111 1 14555555555555555554444
No 270
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=58.23 E-value=14 Score=36.08 Aligned_cols=59 Identities=20% Similarity=0.295 Sum_probs=41.2
Q ss_pred hhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCch
Q 047992 646 LYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVL 704 (868)
Q Consensus 646 ~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~ 704 (868)
-+.+.|.+++|++.++.- .-.| |...-..|..-++..|+.++|..-.+-+.+++|+...
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 456778888887776654 3334 4445556677778888888888888888888886543
No 271
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=57.67 E-value=65 Score=36.22 Aligned_cols=85 Identities=7% Similarity=-0.024 Sum_probs=43.6
Q ss_pred hhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh--
Q 047992 470 SLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAK-- 547 (868)
Q Consensus 470 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k-- 547 (868)
.....+.-.|++|.|.+.+-.. ...|.+.+...|..+.-++. +..+...- .+ .+ ..-+..||..|.+
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F 367 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSF 367 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHh
Confidence 3455566677777777776644 35566666666665544432 11111110 00 11 1124567777765
Q ss_pred -cCCHHHHHHHHhcCCCCC
Q 047992 548 -SGNIVYSRTIFDGMSSKD 565 (868)
Q Consensus 548 -~g~~~~A~~~f~~~~~~d 565 (868)
.++..+|.+.|--+.-++
T Consensus 368 ~~td~~~Al~Y~~li~l~~ 386 (661)
T 2qx5_A 368 RYSDPRVAVEYLVLITLNE 386 (661)
T ss_dssp TTTCHHHHHHHHHGGGGSC
T ss_pred hcCCHHHHHHHHHHHhccC
Confidence 578888888777664333
No 272
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=57.47 E-value=2.9e+02 Score=32.45 Aligned_cols=259 Identities=11% Similarity=0.077 Sum_probs=126.5
Q ss_pred HHHHhcCChhHHHHHHHHhHhCCCCCCee--ehhhHHHHHHhcCCHHHHHHHHHhcccCCC-C-----CCCeeehhhhHH
Q 047992 402 AGYCQAGYCGKAYELFIKMQESDVPPNVI--TWNVLISGYIQNGNEDEAVDLFQRMGKNDK-V-----KRNTASWNSLIA 473 (868)
Q Consensus 402 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~li~~~~~~g~~~~A~~~f~~m~~~~~-~-----~~~~~~~~~li~ 473 (868)
-|....|+.++++.++......+-..+.. .-..+.-+...+|..+++..++........ + .+....-.++.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 35667788888888887766421011111 112223334556655667776666543221 0 011222234444
Q ss_pred HHHhcCCh-hHHHHHHHHhhcCCCCCCHHhH--HH--HHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHH--
Q 047992 474 GYQQLGQK-NNALGVFRKMQSSCFYPNCVTI--LS--VLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYA-- 546 (868)
Q Consensus 474 ~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~--~~--ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~-- 546 (868)
|.+-.|.. +++.+.+..+... .+..+- .. +--.+...|+.+....+...+... .+..+...++.+.+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~d---d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll 535 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYN---DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALI 535 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHT---CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHhc---CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhh
Confidence 44444543 4666666666532 122111 11 111123445666667777766652 12233333333333
Q ss_pred hcCCHHHHHHHHhcCC-CCCce-ecH---HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHH-HHhhccCChHH
Q 047992 547 KSGNIVYSRTIFDGMS-SKDII-TWN---SLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSII-LAHSLAGMVDL 619 (868)
Q Consensus 547 k~g~~~~A~~~f~~~~-~~d~~-~~~---~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll-~a~~~~g~~~~ 619 (868)
-.|+.+.+..+.+.+. ..|.. -|. ++..+|+-.|+.....+++..+... ++. +--.+++ -+....|..+.
T Consensus 536 ~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 536 NYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp TTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCSS
T ss_pred hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHHH
Confidence 5677777766666554 23332 232 2334555667765555588887763 232 2222222 24445566666
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCCh-HHHHHHHHhCCCCCCHHH
Q 047992 620 GKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKL-EEAMEFIEDMPIEPDSSI 671 (868)
Q Consensus 620 a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~-~eA~~~i~~~~~~p~~~~ 671 (868)
..+++..+.+. ..|.+..-.++.-.+.-+|.- .+|.+.+..+.-.+|..+
T Consensus 613 v~rlv~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~V 663 (963)
T 4ady_A 613 VPRIVQLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFV 663 (963)
T ss_dssp HHHHTTTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHH
Confidence 66666655542 245554444444333334443 677777777754555543
No 273
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=54.14 E-value=1.3e+02 Score=27.55 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=25.9
Q ss_pred CCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047992 190 CVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMC 250 (868)
Q Consensus 190 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 250 (868)
++..+....+.+..+.|+.+....+.+.+..+|...-...+.++.+.+. .++...+..+.
T Consensus 124 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 3444444445555555544333333333333444444444444444443 33444444443
No 274
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=53.86 E-value=28 Score=34.78 Aligned_cols=42 Identities=19% Similarity=0.223 Sum_probs=35.1
Q ss_pred HHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 047992 660 IEDMPIEPDSS--IWEALLTACRIHGNIDLAVLAIERLFDLEPG 701 (868)
Q Consensus 660 i~~~~~~p~~~--~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 701 (868)
|...+++|.+. ++++-++.+.+++|+.-|...+++++++.|.
T Consensus 187 FT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 187 FTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 44446777655 7788888899999999999999999999885
No 275
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=53.58 E-value=3.5 Score=35.48 Aligned_cols=38 Identities=11% Similarity=0.304 Sum_probs=29.0
Q ss_pred cEEEe----cccccCCcchhhhHHHHhhhceEEEEecCCcccccCCCccC
Q 047992 818 TIRIV----KNIRMCVHCHETAKYVSMMHHCEIFLADSKCLHHFKNGQCS 863 (868)
Q Consensus 818 ~~~~~----knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~cs 863 (868)
.+||+ ++.+||-+| .|+..-..-++.-+||+|+++.|-
T Consensus 46 ~~Riv~~~~~~~~vi~n~--------~i~~~~~y~~~~~~Fh~w~~~~~~ 87 (130)
T 1qc6_A 46 TFRVVGVKLQDQQVVINY--------SIVKGLKYNQATPTFHQWRDARQV 87 (130)
T ss_dssp EEEEEEECTTTCCEEEEE--------ECCTTCEEEEEETTEEEEECSSCE
T ss_pred EEEEEEEeCCCCeEEEee--------EEeCCcEEeccCCeeEEEEcCCEE
Confidence 78887 678888888 344444455799999999999873
No 276
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=52.17 E-value=1.4e+02 Score=29.26 Aligned_cols=20 Identities=15% Similarity=0.193 Sum_probs=9.1
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 047992 264 LIRSYNQLGQCDVAMEMVKR 283 (868)
Q Consensus 264 li~~~~~~g~~~~A~~~~~~ 283 (868)
.+...+..|..+-+.-+++.
T Consensus 164 ~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 164 CIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHc
Confidence 33444455555544444443
No 277
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=50.19 E-value=2.4e+02 Score=29.40 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=9.5
Q ss_pred HHHHHHcCChHHHHHHHhh
Q 047992 199 LAVYVKCGKLIWARRFFES 217 (868)
Q Consensus 199 i~~y~~~g~~~~A~~~f~~ 217 (868)
+...++.|+.+-...+++.
T Consensus 117 L~~A~~~g~~~~v~~Ll~~ 135 (437)
T 1n11_A 117 LHIAAREGHVETVLALLEK 135 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhC
Confidence 3334455555555555543
No 278
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=48.82 E-value=4 Score=26.30 Aligned_cols=11 Identities=27% Similarity=0.845 Sum_probs=9.3
Q ss_pred ccccCCcchhh
Q 047992 824 NIRMCVHCHET 834 (868)
Q Consensus 824 nlr~c~dch~~ 834 (868)
|-|||.+||--
T Consensus 16 ~YRvC~~CgkP 26 (44)
T 2lo3_A 16 QYRVCEKCGKP 26 (44)
T ss_dssp CEEECTTTCCE
T ss_pred cchhhcccCCc
Confidence 78999999854
No 279
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=48.11 E-value=1.9e+02 Score=27.64 Aligned_cols=40 Identities=5% Similarity=0.082 Sum_probs=20.6
Q ss_pred HHHHHHHHHhCCCCChh--HHHHHHHHHHhcCCHHHHHHHHh
Q 047992 520 KEIHGCVLRRSLESSLP--VMNSLIDTYAKSGNIVYSRTIFD 559 (868)
Q Consensus 520 ~~i~~~~~~~~~~~~~~--~~~~Li~~y~k~g~~~~A~~~f~ 559 (868)
.++...+++.|.+++.. .....+...++.|+.+-+..+++
T Consensus 199 ~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 199 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 45555556655554321 12223344455677766666665
No 280
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=47.59 E-value=2.6e+02 Score=29.09 Aligned_cols=13 Identities=15% Similarity=0.230 Sum_probs=7.1
Q ss_pred HHHHHHHhCCCCC
Q 047992 522 IHGCVLRRSLESS 534 (868)
Q Consensus 522 i~~~~~~~~~~~~ 534 (868)
+...+++.|.+++
T Consensus 359 iv~~Ll~~ga~~~ 371 (437)
T 1n11_A 359 IVTLLLKNGASPN 371 (437)
T ss_dssp HHHHHHHTTCCSC
T ss_pred HHHHHHHCcCCCC
Confidence 4445556666554
No 281
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=46.42 E-value=95 Score=28.69 Aligned_cols=80 Identities=18% Similarity=0.224 Sum_probs=57.8
Q ss_pred HHHHHHHHhC-CCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHhc--cCCCCchhHHHHHHHHhhcCCChhHHHHHH
Q 047992 654 EEAMEFIEDM-PIEPDSS---IWEALLTACRIHGNIDLAVLAIERLFD--LEPGDVLIQRLILQIYAICGKPEDALKVRK 727 (868)
Q Consensus 654 ~eA~~~i~~~-~~~p~~~---~w~~ll~a~~~~~~~~~a~~~~~~~~~--l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 727 (868)
+.+...+... ..+.|+- +|-.++..| ..++......+++.+.. +.-..+..|...|..|...|+|.+|.+|.+
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444444444 3455554 676666655 34557788888888864 677888999999999999999999999998
Q ss_pred HHHhcCC
Q 047992 728 LERENTR 734 (868)
Q Consensus 728 ~m~~~~~ 734 (868)
.-.+++.
T Consensus 140 ~GI~~~A 146 (202)
T 3esl_A 140 LGAENNC 146 (202)
T ss_dssp HHHHTTC
T ss_pred HHHHcCC
Confidence 7666554
No 282
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=45.21 E-value=1.1e+02 Score=28.46 Aligned_cols=19 Identities=0% Similarity=0.104 Sum_probs=9.3
Q ss_pred HHHHHcCCCHHHHHHHHHh
Q 047992 370 INMYSKCEELEAAERVFDM 388 (868)
Q Consensus 370 i~~y~~~g~~~~A~~vf~~ 388 (868)
+....+.|+.+-+..+++.
T Consensus 214 l~~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 214 LDLAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHh
Confidence 3444455555555544443
No 283
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=44.87 E-value=4.4e+02 Score=30.91 Aligned_cols=256 Identities=13% Similarity=0.003 Sum_probs=128.6
Q ss_pred HHHHHHHHHhcCChhHH-HHHHH-HhHhCCCCCCeeehhhH-HHHHHhcCCHHHHHHHHHhcccCC-CCCCCeeehhhhH
Q 047992 397 WNSMIAGYCQAGYCGKA-YELFI-KMQESDVPPNVITWNVL-ISGYIQNGNEDEAVDLFQRMGKND-KVKRNTASWNSLI 472 (868)
Q Consensus 397 ~~~li~~~~~~g~~~~A-~~l~~-~m~~~g~~p~~~t~~~l-i~~~~~~g~~~~A~~~f~~m~~~~-~~~~~~~~~~~li 472 (868)
-.++..++...|-..+. +.... .+-+. .+..-+.++ --+....|+.++++.+++...... .-.+.+..-..+.
T Consensus 342 A~~f~Naf~naG~~~D~~l~~~~~Wl~k~---~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAlla 418 (963)
T 4ady_A 342 AVSVANGFMHAGTTDNSFIKANLPWLGKA---QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYG 418 (963)
T ss_dssp HHHHHHHHHTTTTCCCHHHHHCHHHHHHC---CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcchhhhcchhhhhcc---chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHH
Confidence 34567778887764332 22222 12211 011112222 223566888889988888765421 1122233444555
Q ss_pred HHHHhcCChhHHHHHHHHhhcCCC--CCCHHhHHHHHHHHhchhc------hHHHHHHHHHHHHhCCCCCh----hHHHH
Q 047992 473 AGYQQLGQKNNALGVFRKMQSSCF--YPNCVTILSVLPACAYLVA------SNKVKEIHGCVLRRSLESSL----PVMNS 540 (868)
Q Consensus 473 ~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~a~~~~~~------~~~~~~i~~~~~~~~~~~~~----~~~~~ 540 (868)
-|....|..+++++++.......- .-+..+-.....|+..+|- -+.+.+....++.. .+. ...-+
T Consensus 419 LGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~d---d~~~~~~~AalA 495 (963)
T 4ady_A 419 LGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYN---DSATSGEAAALG 495 (963)
T ss_dssp HHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHT---CCHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhc---CCHHHHHHHHHH
Confidence 667777877788888777553211 0010011111223322222 12333333333331 222 22234
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC--CCce-ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHH---HHHHHhhc
Q 047992 541 LIDTYAKSGNIVYSRTIFDGMSS--KDII-TWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFL---SIILAHSL 613 (868)
Q Consensus 541 Li~~y~k~g~~~~A~~~f~~~~~--~d~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~---~ll~a~~~ 613 (868)
|.-.|.-.|+-+....++..+.+ .+.+ -.-++.-|+..-|+.+.+-.+.+.+... +|. +-|. ++..||.-
T Consensus 496 LGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaG 572 (963)
T 4ady_A 496 MGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAG 572 (963)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTT
T ss_pred HhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcC
Confidence 55556667777777777665432 2222 2223334455789999998888888763 333 3343 33457888
Q ss_pred cCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC
Q 047992 614 AGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM 663 (868)
Q Consensus 614 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~ 663 (868)
.|++..-.++++.+.++ ...++...+.+.=.+.-.|..+.+..+++.+
T Consensus 573 TGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~~L 620 (963)
T 4ady_A 573 TGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQLL 620 (963)
T ss_dssp SCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTG
T ss_pred CCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 89988887788888763 2222322222222222355555555555544
No 284
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=44.83 E-value=2.2e+02 Score=27.62 Aligned_cols=51 Identities=18% Similarity=0.085 Sum_probs=24.7
Q ss_pred HHHHHHHHcCChHHHHHHHhhcCCC-ChhhHHHHHHHHHhcCChhHHHHHHH
Q 047992 197 SVLAVYVKCGKLIWARRFFESMDEK-DGVAWNSMISGYFQIGENDEAHRLFD 247 (868)
Q Consensus 197 ~li~~y~~~g~~~~A~~~f~~~~~~-d~~~~~~li~~~~~~g~~~~A~~l~~ 247 (868)
..+...+..|..+-+..+++.-... +...-.+.+...+..|..+-+.-+++
T Consensus 131 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 131 TSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLD 182 (285)
T ss_dssp SHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHH
Confidence 3444455566666666666554333 22122333444455666554444443
No 285
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=43.50 E-value=1.7e+02 Score=29.85 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=21.3
Q ss_pred hhHHHHHHHhcCChhHHHHHHhhcCCCC
Q 047992 94 KTKLLSVYAKCGCLDDAREVFEDMRERN 121 (868)
Q Consensus 94 ~~~li~~~~~~g~~~~A~~~f~~~~~~~ 121 (868)
...+|.=|...|+.++|...++++..|.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~p~ 84 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNLGE 84 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTCCG
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCch
Confidence 5567777788888888888888876554
No 286
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=43.46 E-value=1.2e+02 Score=25.82 Aligned_cols=84 Identities=14% Similarity=0.086 Sum_probs=53.6
Q ss_pred HHHHHHHHH-HC-CCCCCHHHHHHHHHHhhccCC---hHHHHHHHHHhhhhcCCCC--ChhHHHHHHHhhhhcCChHHHH
Q 047992 585 ALDLFDQMK-SF-GLKPNRGTFLSIILAHSLAGM---VDLGKKVFCSITECYQIIP--MIEHYSAMIDLYGRSGKLEEAM 657 (868)
Q Consensus 585 A~~l~~~m~-~~-g~~p~~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p--~~~~y~~lvd~l~r~g~~~eA~ 657 (868)
-++.|++.- ++ +-.|...|-.....++.|+.. +.+|+.+++.+.+.. | ..+..--+.-++.|.|++++|.
T Consensus 22 eL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~---~~~~Rd~LYyLAvg~yklgdY~~Ar 98 (134)
T 3o48_A 22 QLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA---ESRRRECLYYLTIGCYKLGEYSMAK 98 (134)
T ss_dssp HHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---cchhHHHHHHHHHHHHHhhhHHHHH
Confidence 344444443 22 445666555555666666654 457888888877632 4 2344444566788999999999
Q ss_pred HHHHhC-CCCCCHHH
Q 047992 658 EFIEDM-PIEPDSSI 671 (868)
Q Consensus 658 ~~i~~~-~~~p~~~~ 671 (868)
++++.. ..+|+..-
T Consensus 99 ~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 99 RYVDTLFEHERNNKQ 113 (134)
T ss_dssp HHHHHHHTTCTTCHH
T ss_pred HHHHHHHhhCCCCHH
Confidence 999988 77887553
No 287
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.46 E-value=1.7e+02 Score=30.90 Aligned_cols=56 Identities=13% Similarity=-0.015 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCC------CceecHHHHHHHHhcCChHHHHHHHHHH
Q 047992 537 VMNSLIDTYAKSGNIVYSRTIFDGMSSK------DIITWNSLICGYVLHGFWHAALDLFDQM 592 (868)
Q Consensus 537 ~~~~Li~~y~k~g~~~~A~~~f~~~~~~------d~~~~~~li~~~~~~g~~~~A~~l~~~m 592 (868)
+...+.+.|.++|+++.|.+.|.++... -+..|-..|..+...+++..+....++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3444555566666666666555554321 1123334444444555555555555444
No 288
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=41.34 E-value=2e+02 Score=25.96 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=25.7
Q ss_pred CCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047992 190 CVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMC 250 (868)
Q Consensus 190 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 250 (868)
++..+....+.+..+.|+.+....+.+.+..++...-...+.++.+.|. .++...+..+.
T Consensus 119 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l 178 (201)
T 3ltj_A 119 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLA 178 (201)
T ss_dssp SSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 4444444555555555544333333333333444444444444444443 23334443333
No 289
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=41.30 E-value=5 Score=22.10 Aligned_cols=13 Identities=54% Similarity=1.533 Sum_probs=9.4
Q ss_pred ccCCCcc--CCCCCC
Q 047992 856 HFKNGQC--SCGDYW 868 (868)
Q Consensus 856 ~f~~g~c--sc~d~w 868 (868)
.|.+|.| .||.-|
T Consensus 8 ~fgngfcgdncgnsw 22 (27)
T 2hgo_A 8 NFGNGFCGDNCGNSW 22 (27)
T ss_dssp EETTTEEECSSSCEE
T ss_pred eecCccccCCcCCcc
Confidence 4778888 577666
No 290
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=41.25 E-value=1.5e+02 Score=26.80 Aligned_cols=179 Identities=12% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHhcCChhHHHHHHhhcC----CCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchH--HHHHHHhhCCC
Q 047992 98 LSVYAKCGCLDDAREVFEDMR----ERNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLF--PKILQACGNCG 171 (868)
Q Consensus 98 i~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~--~~ll~~~~~~~ 171 (868)
+...+..|+.+....++..-. .+|..-++.|..+..... .++++.+.+.|..++.... .+.+...+..|
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNND-----IEIAKALIDRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC-----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Q ss_pred ChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCC----ChhhHHHHHHHHHhcCChhHHHHHHH
Q 047992 172 DFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEK----DGVAWNSMISGYFQIGENDEAHRLFD 247 (868)
Q Consensus 172 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~----d~~~~~~li~~~~~~g~~~~A~~l~~ 247 (868)
+.+..+.+... ....+..........+...+..|+.+-+..+++.-... |...++.+..+.........-.++.+
T Consensus 84 ~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 84 RTEILAYMLKH-ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp CHHHHHHHHHH-SCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred CHHHHHHHHhc-cCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Q ss_pred HHHHcCCccChhhHH--HHHHHHHhcCChHHHHHHHH
Q 047992 248 KMCREEIKLGVVTFN--ILIRSYNQLGQCDVAMEMVK 282 (868)
Q Consensus 248 ~m~~~g~~p~~~~~~--~li~~~~~~g~~~~A~~~~~ 282 (868)
.+.+.|..++..... +.+...++.|+.+-+.-+++
T Consensus 163 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 199 (201)
T 3hra_A 163 LLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199 (201)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHh
No 291
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=40.74 E-value=1.9e+02 Score=26.00 Aligned_cols=90 Identities=9% Similarity=0.050 Sum_probs=41.7
Q ss_pred HHcCChHHHHHHHhhcCCC-C-hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhh---HHHHHHHHHh-cCChHH
Q 047992 203 VKCGKLIWARRFFESMDEK-D-GVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVT---FNILIRSYNQ-LGQCDV 276 (868)
Q Consensus 203 ~~~g~~~~A~~~f~~~~~~-d-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~---~~~li~~~~~-~g~~~~ 276 (868)
++.|+++....+++.-... + ..-+ +.+...+..|..+.-.++.+.+.+.|..++... .+.|..++.. ..+...
T Consensus 14 a~~g~~~~~~~l~~~~~~~~~~~~g~-T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~ 92 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGYEDKESVLKS-NILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITG 92 (186)
T ss_dssp HHHSCHHHHHHHHHHSSSCHHHHHTT-THHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHH
T ss_pred HHcCCHHHHHHHHhcCcccccccCCC-CHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhh
Confidence 4456665555555443221 1 1112 233344455555555666666677776654422 2223222221 122333
Q ss_pred HHHHHHHHHhcCCCCCe
Q 047992 277 AMEMVKRMESLGITPDV 293 (868)
Q Consensus 277 A~~~~~~m~~~g~~p~~ 293 (868)
..++.+.+.+.|..++.
T Consensus 93 ~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 93 TTELCKIFLEKGADITA 109 (186)
T ss_dssp HHHHHHHHHHTTCCSSS
T ss_pred HHHHHHHHHHCCCCCCc
Confidence 45555566666655544
No 292
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=39.36 E-value=68 Score=30.82 Aligned_cols=25 Identities=16% Similarity=0.196 Sum_probs=13.0
Q ss_pred HHhcCChhHHHHHHHHHHHcCCccC
Q 047992 233 YFQIGENDEAHRLFDKMCREEIKLG 257 (868)
Q Consensus 233 ~~~~g~~~~A~~l~~~m~~~g~~p~ 257 (868)
.++.|+.+....+++.+.+.|..++
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 3445555555555555555544443
No 293
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=37.94 E-value=44 Score=32.20 Aligned_cols=26 Identities=8% Similarity=-0.051 Sum_probs=16.9
Q ss_pred HHhCCChhHHHHHHHHhHHCCCCCCc
Q 047992 132 YSRDQRWREVVELFFLMVQDGLFPDD 157 (868)
Q Consensus 132 ~~~~g~~~~a~~l~~~m~~~g~~p~~ 157 (868)
.++.|+.+....+++.+...|..++.
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~~ 37 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLTD 37 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTTS
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcch
Confidence 34567777777777766666666553
No 294
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=37.77 E-value=55 Score=26.11 Aligned_cols=28 Identities=11% Similarity=0.134 Sum_probs=26.7
Q ss_pred EEEcCEEEEEEeCCCCCCchHHHHHHHH
Q 047992 743 IEVKNLVYTFVTGGWSESYSDLLYSWLQ 770 (868)
Q Consensus 743 i~~~~~~~~f~~~d~~hp~~~~i~~~l~ 770 (868)
|..+|.+|.|..+|...|..+++..+++
T Consensus 19 V~f~ge~~rF~Vs~~~~~tweel~~mvk 46 (101)
T 1wj6_A 19 VTFKNEIQSFLVSDPENTTWADIEAMVK 46 (101)
T ss_dssp EEETTEEEEEEESCTTTSCHHHHHHHHH
T ss_pred EEEcCCeeEEEecCCCCCCHHHHHHHHH
Confidence 6889999999999999999999999998
No 295
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=37.63 E-value=2e+02 Score=24.84 Aligned_cols=73 Identities=11% Similarity=0.025 Sum_probs=46.4
Q ss_pred CCCCHHHHHHHHHHhhccCC---hHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHH
Q 047992 597 LKPNRGTFLSIILAHSLAGM---VDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSS 670 (868)
Q Consensus 597 ~~p~~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~ 670 (868)
-.|+..|-.....++.++.. +.+|+.+++.+....... ..+..--+.-.+.|.|++++|.++++.+ ..+|+..
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~-~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST-HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc-hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 35666555555666666654 557888888777632211 2233334455678999999999998887 6677644
No 296
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=36.24 E-value=12 Score=27.39 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=17.6
Q ss_pred ceEEEEecCCcccccCCCccC
Q 047992 843 HCEIFLADSKCLHHFKNGQCS 863 (868)
Q Consensus 843 ~r~i~~rd~~rfh~f~~g~cs 863 (868)
...|=+.|.+-.|+||||+-+
T Consensus 7 ~k~v~LkDGstvyiFKDGKMa 27 (74)
T 2k0q_A 7 VKTYDLQDGSKVHVFKDGKMG 27 (74)
T ss_dssp EEEEEBTTSCEEEEETTSCEE
T ss_pred eeeEecCCCcEEEEEcCCcee
Confidence 456778999999999999864
No 297
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=35.68 E-value=1.9e+02 Score=26.61 Aligned_cols=58 Identities=3% Similarity=0.114 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHH
Q 047992 516 SNKVKEIHGCVLRRSLES-SLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLI 573 (868)
Q Consensus 516 ~~~~~~i~~~~~~~~~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li 573 (868)
......++.++...|+.. -...|.+....+...|++.+|.+||+.-.+........|.
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~ 153 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLL 153 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHH
Confidence 456777777777777765 4556777788888888888888888876555555555444
No 298
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=34.56 E-value=1e+02 Score=26.05 Aligned_cols=62 Identities=11% Similarity=0.187 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCChHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCccC
Q 047992 196 NSVLAVYVKCGKLIWARRFFESMDEK---DGVAWNSMISGYFQIGE--NDEAHRLFDKMCREEIKLG 257 (868)
Q Consensus 196 ~~li~~y~~~g~~~~A~~~f~~~~~~---d~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~ 257 (868)
+.++.-|...|+.++|.+.++++..+ ..+...++..++-+.+. .+.+..++..+...|+-+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 56778888888888888888888755 23344455555555432 3556777777776654433
No 299
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=34.55 E-value=74 Score=27.95 Aligned_cols=63 Identities=11% Similarity=0.172 Sum_probs=41.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCccC
Q 047992 195 RNSVLAVYVKCGKLIWARRFFESMDEK---DGVAWNSMISGYFQIGE--NDEAHRLFDKMCREEIKLG 257 (868)
Q Consensus 195 ~~~li~~y~~~g~~~~A~~~f~~~~~~---d~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~ 257 (868)
.+.++.-|...|+.++|.+.++++..+ ..+...++..++-+.+. .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 356788888888999999988888765 23344555555555322 3456677777776654443
No 300
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=34.38 E-value=2.8e+02 Score=25.53 Aligned_cols=20 Identities=15% Similarity=-0.057 Sum_probs=9.5
Q ss_pred HHHHHhcCChhHHHHHHhhc
Q 047992 98 LSVYAKCGCLDDAREVFEDM 117 (868)
Q Consensus 98 i~~~~~~g~~~~A~~~f~~~ 117 (868)
+...++.|+.+-+..+++.-
T Consensus 46 L~~A~~~~~~~~v~~Ll~~~ 65 (240)
T 3eu9_A 46 LHWAAINNRIDLVKYYISKG 65 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHcC
Confidence 33444455555555554443
No 301
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=34.35 E-value=2.5e+02 Score=28.36 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=12.1
Q ss_pred HHHHHHHHHcCChHHHHHHHhh
Q 047992 196 NSVLAVYVKCGKLIWARRFFES 217 (868)
Q Consensus 196 ~~li~~y~~~g~~~~A~~~f~~ 217 (868)
...+...+..|+.+-...+++.
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~ 42 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIET 42 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT
T ss_pred CCHHHHHHHcCCHHHHHHHHHc
Confidence 3344455556666666666554
No 302
>1j0t_A MIH, MOLT-inhibiting hormone; alpha-helical protein, hormone/growth factor complex; NMR {Marsupenaeus japonicus} SCOP: a.163.1.1
Probab=32.80 E-value=4.6 Score=30.74 Aligned_cols=14 Identities=29% Similarity=0.769 Sum_probs=10.9
Q ss_pred cccccCCcchhhhH
Q 047992 823 KNIRMCVHCHETAK 836 (868)
Q Consensus 823 knlr~c~dch~~~k 836 (868)
|--|||.|||+...
T Consensus 20 kldrVCdDCyNLyR 33 (78)
T 1j0t_A 20 KVVRVCEDCTNIFR 33 (78)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 45699999998653
No 303
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.76 E-value=1.8e+02 Score=30.77 Aligned_cols=60 Identities=20% Similarity=0.215 Sum_probs=29.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCc--cChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 047992 225 AWNSMISGYFQIGENDEAHRLFDKMCREEIK--LGVVTFNILIRSYNQLGQCDVAMEMVKRM 284 (868)
Q Consensus 225 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m 284 (868)
++..+...|.+.|++++|.+.|.++...-.. --...+-.+++.+...+++..+...+++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3445555566666666666666665543211 12233444444455555555555444444
No 304
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=31.06 E-value=2.6e+02 Score=25.59 Aligned_cols=61 Identities=25% Similarity=0.293 Sum_probs=36.6
Q ss_pred hHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 047992 653 LEEAMEFIEDMPIEPDSS-------IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIY 713 (868)
Q Consensus 653 ~~eA~~~i~~~~~~p~~~-------~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 713 (868)
++.|..+++.+.-+-|.. +--.....|...|++++|+++++++++-+|.+...-..|.++-
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II 161 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMII 161 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 455666666663322211 1123445699999999999999999999988777666666553
No 305
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=29.43 E-value=1.4e+02 Score=28.39 Aligned_cols=86 Identities=17% Similarity=0.170 Sum_probs=44.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHhhc--CCCC----CcccHHHHHHHHhccCChHHHHHHHHHhhhcCCCChhhhhHHHHHH
Q 047992 28 HLDFLCGNGRLNEAITVLDSIATQ--GAKV----RRNTYINLLQACIDSNSIHLARKLHAFLNLVTEIDVFVKTKLLSVY 101 (868)
Q Consensus 28 ll~~~~~~g~~~~a~~~~~~m~~~--~~~~----~~~~~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~li~~~ 101 (868)
-|..+....++++|+++++..... +.++ ........++.-...+.-..+..+...+.. .+++......+..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~--~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS--SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT--CSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHH
Confidence 467788899999999998765432 2221 112233334333333333334444333311 33344445555566
Q ss_pred HhcCChhHHHHHHh
Q 047992 102 AKCGCLDDAREVFE 115 (868)
Q Consensus 102 ~~~g~~~~A~~~f~ 115 (868)
.+.|.-+.|+.+|=
T Consensus 102 ~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 102 IKLGLPEQALDLFL 115 (235)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHCCChhHHHHHHH
Confidence 66666666666553
No 306
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=28.57 E-value=43 Score=26.00 Aligned_cols=28 Identities=11% Similarity=0.134 Sum_probs=26.6
Q ss_pred EEEcCEEEEEEeCCCCCCchHHHHHHHH
Q 047992 743 IEVKNLVYTFVTGGWSESYSDLLYSWLQ 770 (868)
Q Consensus 743 i~~~~~~~~f~~~d~~hp~~~~i~~~l~ 770 (868)
|..+|.+|.|..++...|..+++..++.
T Consensus 11 V~f~ge~~rf~vs~~~~~tweel~~mvk 38 (87)
T 2bkf_A 11 VTFKNEIQSFLVSDPENTTWADIEAMVK 38 (87)
T ss_dssp EEETTEEEEEEESCGGGCCHHHHHHHHH
T ss_pred EEEcCCeeEEEeccCCCCCHHHHHHHHH
Confidence 6889999999999999999999999998
No 307
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.38 E-value=2.6e+02 Score=30.19 Aligned_cols=116 Identities=12% Similarity=0.154 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCc-eecHHHH-------HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 047992 535 LPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDI-ITWNSLI-------CGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLS 606 (868)
Q Consensus 535 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~-~~~~~li-------~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 606 (868)
..+.|.|+..|...+.++.|..+..+..-|.. .+.+..+ ..++..+++.+|.+.|...... ..++
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk-ap~~------ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK-APHN------ 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS-CSCS------
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCcc------
Q ss_pred HHHHhhccCChHHHHHHHHHhhhhcCCCCChhH------------HHHHHHhhhhcCChHHHHHHHHh
Q 047992 607 IILAHSLAGMVDLGKKVFCSITECYQIIPMIEH------------YSAMIDLYGRSGKLEEAMEFIED 662 (868)
Q Consensus 607 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~------------y~~lvd~l~r~g~~~eA~~~i~~ 662 (868)
....|....+.+++--..--.|..|+... |..++.++ |.|++++-.+.+++
T Consensus 304 ----~~a~gfr~~a~K~lI~V~LLlG~iP~r~lf~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~ 366 (523)
T 4b4t_S 304 ----SKSLGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITK 366 (523)
T ss_dssp ----SSCSHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred ----hhhhhHHHHHHHHHHhHHhhcCCCCChHHhhchhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHH
No 308
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=27.98 E-value=2.6e+02 Score=24.46 Aligned_cols=47 Identities=6% Similarity=0.182 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 047992 519 VKEIHGCVLRRSLES-SLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKD 565 (868)
Q Consensus 519 ~~~i~~~~~~~~~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d 565 (868)
...++..+...|+.. -...|.+....+.+.|++.+|.+||+.-.+.+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 344444444444443 23334445555555555555555555433333
No 309
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=27.02 E-value=2.1e+02 Score=26.59 Aligned_cols=38 Identities=13% Similarity=0.263 Sum_probs=24.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 047992 675 LLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQI 712 (868)
Q Consensus 675 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 712 (868)
....|...|.+++|++++++.++-+|.+-.--.-|.+|
T Consensus 120 AV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~I 157 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNI 157 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 44568888888888888888888655443333334333
No 310
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=26.51 E-value=3.6e+02 Score=24.38 Aligned_cols=80 Identities=13% Similarity=0.047 Sum_probs=37.4
Q ss_pred CCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHH
Q 047992 190 CVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYN 269 (868)
Q Consensus 190 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 269 (868)
++..+....+.+..+.|+.+....+.+.+..+|...-...+.++.+.+..+ +...+..+.. .++..+-...+.++.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALG 168 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 444455555555555555444444444444455544455555555555432 3333333332 234444444444444
Q ss_pred hcCC
Q 047992 270 QLGQ 273 (868)
Q Consensus 270 ~~g~ 273 (868)
+.+.
T Consensus 169 ~~~~ 172 (211)
T 3ltm_A 169 EIGG 172 (211)
T ss_dssp HHCS
T ss_pred HhCc
Confidence 4443
No 311
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=26.16 E-value=2.8e+02 Score=26.88 Aligned_cols=221 Identities=10% Similarity=-0.024 Sum_probs=0.0
Q ss_pred CCChhhhhHHHHHHHhcCChhHHHH--------------HHhhcCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCC
Q 047992 88 EIDVFVKTKLLSVYAKCGCLDDARE--------------VFEDMRERNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGL 153 (868)
Q Consensus 88 ~~~~~~~~~li~~~~~~g~~~~A~~--------------~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 153 (868)
..........+...+..|+.+...+ +-+....+|..-++.|..+..... .++++.+.+.|.
T Consensus 9 ~~~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~-----~~~v~~Ll~~g~ 83 (285)
T 3d9h_A 9 HHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGH-----QLSLRNLISQGW 83 (285)
T ss_dssp ---------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTC-----HHHHHHHHHTTC
T ss_pred cccchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCC-----HHHHHHHHHCCC
Q ss_pred CCCcchHH--HHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhhH-HHHH
Q 047992 154 FPDDFLFP--KILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAW-NSMI 230 (868)
Q Consensus 154 ~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~-~~li 230 (868)
.++..... +.|..++..|+.+.++.+.+. ...+..........+...+..|..+-+..+++.-...+.... .+.+
T Consensus 84 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L 161 (285)
T 3d9h_A 84 AVNIITADHVSPLHEACLGGHLSCVKILLKH--GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPI 161 (285)
T ss_dssp CSCEECTTCCCHHHHHHHTTCHHHHHHHHHT--TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHH
T ss_pred CCCCcCCCCCCHHHHHHHCCcHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCccChhhHH--HHHHHHHhcCChHHHHHHHHHHHhcCCCCCe-eeHHHHHHHHHhcC
Q 047992 231 SGYFQIGENDEAHRLFDKMCREEIKLGVVTFN--ILIRSYNQLGQCDVAMEMVKRMESLGITPDV-FTWTCMISGFAQNG 307 (868)
Q Consensus 231 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g 307 (868)
...+..|+.+ +++.+.+.|..++..... +.+...+..|+. ++++.+.+.|..++. ..-.+.+...++.|
T Consensus 162 ~~A~~~g~~~----~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~----~~v~~Ll~~ga~~~~~~~g~t~L~~A~~~~ 233 (285)
T 3d9h_A 162 HEAARRGHVE----CVNSLIAYGGNIDHKISHLGTPLYLACENQQR----ACVKKLLESGADVNQGKGQDSPLHAVVRTA 233 (285)
T ss_dssp HHHHHHTCHH----HHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCH----HHHHHHHHTTCCTTCCBTTBCHHHHHHHTT
T ss_pred HHHHHcCCHH----HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH----HHHHHHHHCCCCCCCCCCCCCHHHHHHHcC
Q ss_pred ChhHHHHHHHHHHhCCccCC
Q 047992 308 RTSQALDLFKEMSFVGVMPN 327 (868)
Q Consensus 308 ~~~~A~~l~~~m~~~g~~pd 327 (868)
+. ++.+.+.+.|..++
T Consensus 234 ~~----~~v~~Ll~~gad~~ 249 (285)
T 3d9h_A 234 SE----ELACLLMDFGADTQ 249 (285)
T ss_dssp CH----HHHHHHHHTTCCTT
T ss_pred CH----HHHHHHHHCCCCCC
No 312
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=25.75 E-value=2.1e+02 Score=27.08 Aligned_cols=18 Identities=0% Similarity=0.220 Sum_probs=9.4
Q ss_pred HHHHHcCCCHHHHHHHHH
Q 047992 370 INMYSKCEELEAAERVFD 387 (868)
Q Consensus 370 i~~y~~~g~~~~A~~vf~ 387 (868)
+...+..|+.+-+..+++
T Consensus 140 L~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 140 LSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHh
Confidence 334445556555555555
No 313
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=25.39 E-value=4e+02 Score=24.48 Aligned_cols=203 Identities=12% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHHHhHHCCCCCCcchHH--HHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcC
Q 047992 142 VELFFLMVQDGLFPDDFLFP--KILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMD 219 (868)
Q Consensus 142 ~~l~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 219 (868)
.++++.+.+.|..++..... +.+..++..|+.+.++.+.+. ...+..........+...+..|+.+-+..+++.-+
T Consensus 24 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~ 101 (237)
T 3b7b_A 24 VDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA--GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ 101 (237)
T ss_dssp HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT--TCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred HHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhC--CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q ss_pred CC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChh--hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCe
Q 047992 220 EK----DGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVV--TFNILIRSYNQLGQCDVAMEMVKRMESLGITPDV 293 (868)
Q Consensus 220 ~~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 293 (868)
.. +...++.+..+..... .++++.+.+.|..++.. ...+.+...++.|..+ +++.+.+.|..++.
T Consensus 102 ~~~~~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~ 172 (237)
T 3b7b_A 102 MDVNCQDDGGWTPMIWATEYKH-----VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVD----IAEILLAAKCDLHA 172 (237)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHH----HHHHHHTTTCCTTC
T ss_pred CCcccCCCCCCCHHHHHHHcCC-----HHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHH----HHHHHHHcCCCCCC
Q ss_pred eeHH--HHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHh
Q 047992 294 FTWT--CMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKM 357 (868)
Q Consensus 294 ~~~~--~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 357 (868)
.... +.+...++.|+.+-+.-+++.- ..+......-.+.+......++...+.++.+.+.++
T Consensus 173 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--ad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~ds 236 (237)
T 3b7b_A 173 VNIHGDSPLHIAARENRYDCVVLFLSRD--SDVTLKNKEGETPLQCASLNSQVWSALQMSKALQDS 236 (237)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHTTT--CCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHhCCHhHHHHHHHcC--CCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcc
No 314
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=25.27 E-value=3.2e+02 Score=23.86 Aligned_cols=75 Identities=13% Similarity=0.010 Sum_probs=49.7
Q ss_pred HHHHHHHHhC-CCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHhc--cCCCCchhHHHHHHHHhhcCCChhHHHHHH
Q 047992 654 EEAMEFIEDM-PIEPDSS---IWEALLTACRIHGNIDLAVLAIERLFD--LEPGDVLIQRLILQIYAICGKPEDALKVRK 727 (868)
Q Consensus 654 ~eA~~~i~~~-~~~p~~~---~w~~ll~a~~~~~~~~~a~~~~~~~~~--l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 727 (868)
+.+...+... ..+.|+- +|-.++..| .+ ...+++.+.. +.-..+..|...|..+...|++.+|.+|.+
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~~---~d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 125 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEYN---SD---LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQ 125 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTTB---SC---HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhc---CC---HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3345555444 3445544 555555433 23 6777777764 566778889999999999999999999888
Q ss_pred HHHhcCC
Q 047992 728 LERENTR 734 (868)
Q Consensus 728 ~m~~~~~ 734 (868)
.-.+++.
T Consensus 126 ~Gi~~~A 132 (152)
T 4a1g_A 126 RGIQNQA 132 (152)
T ss_dssp HHHHTTC
T ss_pred HHHHcCC
Confidence 6665543
No 315
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=25.22 E-value=2.5e+02 Score=23.66 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=15.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 047992 226 WNSMISGYFQIGENDEAHRLFDKMC 250 (868)
Q Consensus 226 ~~~li~~~~~~g~~~~A~~l~~~m~ 250 (868)
.+.++.-|...|+.++|.+.++++.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4556666666666666666666654
No 316
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=25.04 E-value=1.3e+02 Score=26.86 Aligned_cols=75 Identities=13% Similarity=0.100 Sum_probs=49.5
Q ss_pred HHHHHHHHhC-CCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHhc--cCCCCchhHHHHHHHHhhcCCChhHHHHHH
Q 047992 654 EEAMEFIEDM-PIEPDSS---IWEALLTACRIHGNIDLAVLAIERLFD--LEPGDVLIQRLILQIYAICGKPEDALKVRK 727 (868)
Q Consensus 654 ~eA~~~i~~~-~~~p~~~---~w~~ll~a~~~~~~~~~a~~~~~~~~~--l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 727 (868)
+.+...|... ..+.|+- +|-.++..| ++ ...+++.+.. +.-..+..|...|..|...|+|.+|.+|.+
T Consensus 47 Erc~~~f~~~~~YknD~RyLklWl~ya~~~---~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~ 120 (164)
T 2wvi_A 47 ERAVEALQGEKRYYSDPRFLNLWLKLGRLC---NE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQ 120 (164)
T ss_dssp HHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhhhhhhccCHHHHHHHHHHHHhc---CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3344444433 2444544 666555554 33 5556666654 667788889999999999999999999988
Q ss_pred HHHhcCC
Q 047992 728 LERENTR 734 (868)
Q Consensus 728 ~m~~~~~ 734 (868)
.-.+++.
T Consensus 121 ~Gi~~~A 127 (164)
T 2wvi_A 121 EGIQQKA 127 (164)
T ss_dssp HHHHTTC
T ss_pred HHHHcCC
Confidence 7666553
No 317
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=23.66 E-value=4.3e+02 Score=26.48 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=9.2
Q ss_pred HHHhcCChhHHHHHHhhcC
Q 047992 100 VYAKCGCLDDAREVFEDMR 118 (868)
Q Consensus 100 ~~~~~g~~~~A~~~f~~~~ 118 (868)
.-+..|+.+-+..+++.-.
T Consensus 59 ~A~~~g~~~~v~~Ll~~g~ 77 (364)
T 3ljn_A 59 LACKFGCVDTAKYLASVGE 77 (364)
T ss_dssp HHHHHCCHHHHHHHHHHCC
T ss_pred HHHHcCCHHHHHHHHHCCC
Confidence 3344455555555554433
No 318
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=23.35 E-value=4.9e+02 Score=24.81 Aligned_cols=84 Identities=10% Similarity=-0.054 Sum_probs=35.3
Q ss_pred CCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCccChhhHHHHHHH
Q 047992 189 SCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIG-ENDEAHRLFDKMCREEIKLGVVTFNILIRS 267 (868)
Q Consensus 189 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 267 (868)
+++..+....+.+..+.|+.+..-.+.+.+..++...-...+.++.+.+ ...++...+..+.. .++..+-...+.+
T Consensus 139 d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~a 215 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIG 215 (280)
T ss_dssp CSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHH
Confidence 3455555555555555554332223333333444433333444444433 12344444444332 3344444555555
Q ss_pred HHhcCChH
Q 047992 268 YNQLGQCD 275 (868)
Q Consensus 268 ~~~~g~~~ 275 (868)
+.+.|+..
T Consensus 216 L~~~~~~~ 223 (280)
T 1oyz_A 216 LSYRKDKR 223 (280)
T ss_dssp HHHTTCGG
T ss_pred HHHhCCHh
Confidence 55555433
No 319
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=23.16 E-value=4.3e+02 Score=24.09 Aligned_cols=19 Identities=21% Similarity=0.137 Sum_probs=11.1
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 047992 265 IRSYNQLGQCDVAMEMVKR 283 (868)
Q Consensus 265 i~~~~~~g~~~~A~~~~~~ 283 (868)
+...++.|+.+....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4445556666666666554
No 320
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=22.30 E-value=2.4e+02 Score=26.98 Aligned_cols=18 Identities=6% Similarity=0.200 Sum_probs=9.9
Q ss_pred HHHHHcCCCHHHHHHHHH
Q 047992 370 INMYSKCEELEAAERVFD 387 (868)
Q Consensus 370 i~~y~~~g~~~~A~~vf~ 387 (868)
+...+..|+.+-+..+++
T Consensus 152 L~~A~~~g~~~~v~~Ll~ 169 (273)
T 2pnn_A 152 LSLAACTNQLAIVKFLLQ 169 (273)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHh
Confidence 344445566666555555
No 321
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=21.91 E-value=4.6e+02 Score=23.94 Aligned_cols=180 Identities=11% Similarity=-0.035 Sum_probs=0.0
Q ss_pred hhHHHHHHHhcCChhHHHHHHhh----cCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCC--------CcchHH
Q 047992 94 KTKLLSVYAKCGCLDDAREVFED----MRERNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFP--------DDFLFP 161 (868)
Q Consensus 94 ~~~li~~~~~~g~~~~A~~~f~~----~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p--------~~~t~~ 161 (868)
..+.+..-++.|+.+....+++. ...+|..-++.|..+..... .++.+.+.+.|..+ |..-.+
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~-----~~~v~~Ll~~~~~~~~~~~~~~~~~g~t 77 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDN-----LEAAMVLMEAAPELVFEPMTSELYEGQT 77 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTC-----HHHHHHHHHHCGGGGGCCCCSTTTTTCC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCC-----HHHHHHHHHcCchhccccccccCCCCcC
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHhCCCCCcc---------------hHHHHHHHHHHcCChHHHHHHHhhcCCCChh--
Q 047992 162 KILQACGNCGDFEAGKLMHSLVIKLGMSCVRR---------------VRNSVLAVYVKCGKLIWARRFFESMDEKDGV-- 224 (868)
Q Consensus 162 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---------------~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~-- 224 (868)
.+..++.... ..+...+++.|..++.. -....+...+..|+.+-+..+++.-...+..
T Consensus 78 ~L~~A~~~~~-----~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~ 152 (232)
T 2rfa_A 78 ALHIAVINQN-----VNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDS 152 (232)
T ss_dssp HHHHHHHTTC-----HHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred HHHHHHHcCC-----HHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCccC--------hhhHHHHHHHHHhcCChHHHHHHHHH
Q 047992 225 AWNSMISGYFQIGENDEAHRLFDKMCREEIKLG--------VVTFNILIRSYNQLGQCDVAMEMVKR 283 (868)
Q Consensus 225 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--------~~~~~~li~~~~~~g~~~~A~~~~~~ 283 (868)
.-.+.+...+..|+.+-+..+++.+.+.|..++ ...-.+-+...++.|+.+-+..+++.
T Consensus 153 ~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 153 LGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219 (232)
T ss_dssp TSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhc
No 322
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=21.26 E-value=4.4e+02 Score=24.90 Aligned_cols=21 Identities=14% Similarity=0.072 Sum_probs=13.4
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 047992 300 ISGFAQNGRTSQALDLFKEMS 320 (868)
Q Consensus 300 i~~~~~~g~~~~A~~l~~~m~ 320 (868)
++.+....++++|.+++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 556666667777776666553
No 323
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=21.02 E-value=1.2e+02 Score=32.80 Aligned_cols=40 Identities=13% Similarity=0.023 Sum_probs=19.8
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCC
Q 047992 680 RIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKP 719 (868)
Q Consensus 680 ~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 719 (868)
|-....+.|+..|+++..+.|++..+|..|+.++...|+.
T Consensus 163 RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~ 202 (497)
T 1ya0_A 163 RYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDH 202 (497)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhccccc
Confidence 3334444555555555555555555555555555444443
No 324
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=20.49 E-value=3.9e+02 Score=26.94 Aligned_cols=59 Identities=7% Similarity=0.095 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCChHHHHHHHhhcCCCC---hhhHHHHHHHHHhcC-ChhHHHHHHHHHHHcCC
Q 047992 196 NSVLAVYVKCGKLIWARRFFESMDEKD---GVAWNSMISGYFQIG-ENDEAHRLFDKMCREEI 254 (868)
Q Consensus 196 ~~li~~y~~~g~~~~A~~~f~~~~~~d---~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~ 254 (868)
..++.-|...|+.++|.+.++++..|. .+....+..++-+.. ..+.+..++..+.+.|+
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 567888889999999999999997663 223333333333221 23445566666665543
No 325
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=20.38 E-value=4.6e+02 Score=23.40 Aligned_cols=82 Identities=11% Similarity=0.066 Sum_probs=50.7
Q ss_pred HhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCC---------------C-CHHH-HHHHH
Q 047992 546 AKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLK---------------P-NRGT-FLSII 608 (868)
Q Consensus 546 ~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---------------p-~~~t-~~~ll 608 (868)
.-.|....|.-.+.....-..+-|.++ +|-...++..|+..++.+++..+. | |..- ++-+.
T Consensus 44 yyngEY~R~Lf~L~~lNT~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a 121 (242)
T 3kae_A 44 YLNGEYTRALFHLHKLNTCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLG 121 (242)
T ss_dssp HHTTCHHHHHHHHHTCCBHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHH
T ss_pred hhcchHhHHHHHHHhcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHH
Confidence 345777776666655433222333333 566778888888888888754443 2 3333 34444
Q ss_pred HHhhccCChHHHHHHHHHhhh
Q 047992 609 LAHSLAGMVDLGKKVFCSITE 629 (868)
Q Consensus 609 ~a~~~~g~~~~a~~~~~~m~~ 629 (868)
..|.+.|..+||+.+|..--.
T Consensus 122 ~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 122 DLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHhhhHhhhhcC
Confidence 568889999999998875433
No 326
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=20.10 E-value=6.6e+02 Score=25.05 Aligned_cols=128 Identities=8% Similarity=-0.047 Sum_probs=80.0
Q ss_pred HHHhCCChhHHHHHHHHHhhcCC------CCCcccHHHHHHHHhccCChHHHHHHHHHh-hhcCCCChhhhhHHHHHHHh
Q 047992 31 FLCGNGRLNEAITVLDSIATQGA------KVRRNTYINLLQACIDSNSIHLARKLHAFL-NLVTEIDVFVKTKLLSVYAK 103 (868)
Q Consensus 31 ~~~~~g~~~~a~~~~~~m~~~~~------~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~-~~~~~~~~~~~~~li~~~~~ 103 (868)
.+...|++.+|+..|+.+...=. +-+..-...++..| +.+-.|..+ .+ +..+..+....+.-+.+|.-
T Consensus 123 k~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~ic---rEYilal~i--El~Rr~l~~~~~kR~lELAAYFT 197 (325)
T 3mv2_A 123 KNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETA---REYILGLSI--ELERRSLKEGNTVRMLELAAYFT 197 (325)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHH---HHHHHHHHH--HHHHHTCCTTCHHHHHHHHHHGG
T ss_pred HHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHH---HHHHHHHHH--HHHHHhcCcccHHHHHHHHHHhc
Confidence 34779999999999988765411 11122355666666 445555555 33 34444455566677777776
Q ss_pred cCChhHHHHHHhhcCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHH
Q 047992 104 CGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLV 183 (868)
Q Consensus 104 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 183 (868)
+-+++-....+ +...-|....+.+++..|..+-+++++.+-.|+ ..+.|+++....
T Consensus 198 ~c~LQp~H~~L---------aLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~---------------~a~qArkil~~c 253 (325)
T 3mv2_A 198 KAKLSPIHRTN---------ALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP---------------RAEQARKIKNKA 253 (325)
T ss_dssp GSCCCHHHHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH---------------HHHHHHHHHHHH
T ss_pred cCCCcHHHHHH---------HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH---------------HHHHHHHHHHHH
Confidence 66666555543 345566777889999999999999987653222 234566666666
Q ss_pred HHhC
Q 047992 184 IKLG 187 (868)
Q Consensus 184 ~~~g 187 (868)
.+.+
T Consensus 254 e~~~ 257 (325)
T 3mv2_A 254 DSMA 257 (325)
T ss_dssp HTSC
T ss_pred hcCC
Confidence 5543
Done!