BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047993
         (210 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase
 pdb|3RHK|A Chain A, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
           In Complex With Arq 197
 pdb|3RHK|B Chain B, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
           In Complex With Arq 197
          Length = 318

 Score = 32.0 bits (71), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 16/117 (13%)

Query: 15  IGENDYKYALFQGKTVEEVKTLVPEVVQAIKDAV----TRVIDFGAVRVVVPGNFPVGCF 70
           +G++D    L Q     ++  L PE+VQA++  V    + ++ F    V+  G+F  GC 
Sbjct: 9   MGDSDISSPLLQNTVHIDLSALNPELVQAVQHVVIGPSSLIVHFN--EVIGRGHF--GC- 63

Query: 71  PIYLTQFRTNDSAAYDQFHC-LKCLNNLS--FHHNELLQQAIQELKNEHPNVAIIYG 124
            +Y      ND     + HC +K LN ++     ++ L + I      HPNV  + G
Sbjct: 64  -VYHGTLLDNDGK---KIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLG 116


>pdb|1F6D|A Chain A, The Structure Of Udp-N-Acetylglucosamine 2-Epimerase From
           E. Coli.
 pdb|1F6D|B Chain B, The Structure Of Udp-N-Acetylglucosamine 2-Epimerase From
           E. Coli.
 pdb|1F6D|C Chain C, The Structure Of Udp-N-Acetylglucosamine 2-Epimerase From
           E. Coli.
 pdb|1F6D|D Chain D, The Structure Of Udp-N-Acetylglucosamine 2-Epimerase From
           E. Coli
          Length = 376

 Score = 28.9 bits (63), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 5/103 (4%)

Query: 100 HHNELLQQAIQELKNEHPNVAIIYGDYYTAFMWILGHVRTLEFDNGSMQKACCGIGGD-- 157
           H N  +++ +  +     NV +I    Y  F+W+  H   +  D+G +Q+    +G    
Sbjct: 246 HLNPNVREPVNRILGHVKNVILIDPQEYLPFVWLXNHAWLILTDSGGIQEEAPSLGKPVL 305

Query: 158 --YDFNLTKMCGMSGVPVCENLDK-RISWDGVHLTQKANKYMA 197
              D         +G       DK RI  +   L +  N+Y A
Sbjct: 306 VXRDTTERPEAVTAGTVRLVGTDKQRIVEEVTRLLKDENEYQA 348


>pdb|1VGV|A Chain A, Crystal Structure Of Udp-N-Acetylglucosamine_2 Epimerase
 pdb|1VGV|B Chain B, Crystal Structure Of Udp-N-Acetylglucosamine_2 Epimerase
 pdb|1VGV|C Chain C, Crystal Structure Of Udp-N-Acetylglucosamine_2 Epimerase
 pdb|1VGV|D Chain D, Crystal Structure Of Udp-N-Acetylglucosamine_2 Epimerase
          Length = 384

 Score = 28.9 bits (63), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 13/56 (23%), Positives = 26/56 (46%)

Query: 100 HHNELLQQAIQELKNEHPNVAIIYGDYYTAFMWILGHVRTLEFDNGSMQKACCGIG 155
           H N  +++ +  +     NV +I    Y  F+W+  H   +  D+G +Q+    +G
Sbjct: 246 HLNPNVREPVNRILGHVKNVILIDPQEYLPFVWLXNHAWLILTDSGGIQEEAPSLG 301


>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
 pdb|4GG7|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
          Length = 319

 Score = 26.6 bits (57), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 16/108 (14%)

Query: 24  LFQGKTVEEVKTLVPEVVQAIKDAV----TRVIDFGAVRVVVPGNFPVGCFPIYLTQFRT 79
           L Q     ++  L PE+VQA++  V    + ++ F    V+  G+F  GC  +Y      
Sbjct: 19  LLQNTVHIDLSALNPELVQAVQHVVIGPSSLIVHFN--EVIGRGHF--GC--VYHGTLLD 72

Query: 80  NDSAAYDQFHC-LKCLNNLS--FHHNELLQQAIQELKNEHPNVAIIYG 124
           ND     + HC +K LN ++     ++ L + I      HPNV  + G
Sbjct: 73  NDGK---KIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLG 117


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.140    0.452 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,684,851
Number of Sequences: 62578
Number of extensions: 272843
Number of successful extensions: 993
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 990
Number of HSP's gapped (non-prelim): 5
length of query: 210
length of database: 14,973,337
effective HSP length: 95
effective length of query: 115
effective length of database: 9,028,427
effective search space: 1038269105
effective search space used: 1038269105
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)