BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047994
         (101 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8LFP1|PRA1H_ARATH PRA1 family protein H OS=Arabidopsis thaliana GN=PRA1H PE=2 SV=1
          Length = 241

 Score =  105 bits (262), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 64/151 (42%), Positives = 77/151 (50%), Gaps = 51/151 (33%)

Query: 1   MVFASNPLSLNVPDPAFESWLRDSSYLEILDTAT-------------------------- 34
           M F+ NPLSL+VPDPAFESWLRDS YLE+LD  T                          
Sbjct: 1   MAFSPNPLSLSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDD 60

Query: 35  ------------------TTSATAVTTASTKETA------TTPSWTREFIGALRSYSFPS 70
                             T S+       +K +A      TTP WT  FIG   SYSFPS
Sbjct: 61  VVSSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTTP-WTTGFIGNCDSYSFPS 119

Query: 71  SPHTLKLRVHENVKRYARNYASLFILFFACS 101
           S    ++RVHEN+KR+ARNYA+LFI+FFAC+
Sbjct: 120 SSQQARMRVHENIKRFARNYATLFIVFFACA 150


>sp|Q54XK1|PRAFA_DICDI PRA1 family protein 1 OS=Dictyostelium discoideum GN=prafA PE=3
           SV=1
          Length = 235

 Score = 34.3 bits (77), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 51  TTPSWTREFIGALRSYSFPSSPHTLKLRVHENVKRYARNYASLFILF 97
           TT  W R F+G+ + Y  P+   T   R+ ENV  +  NY  LF+ F
Sbjct: 99  TTRDW-RSFVGSRQQYGLPNIKDTTS-RIKENVVYFQSNYLILFLCF 143


>sp|Q13V90|ADE_BURXL Adenine deaminase OS=Burkholderia xenovorans (strain LB400)
           GN=Bxeno_A3461 PE=3 SV=1
          Length = 350

 Score = 30.4 bits (67), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 8   LSLNVPDPAFESWLRDSSYLEILDTATTTSATAVTTA--STKETATTPSWTREFIGALRS 65
           +++N  DPA+     +++YL  +D      A   T    S + +  TP    E I  L +
Sbjct: 283 VTVNSDDPAYFGGYVNANYLATIDALKLNDAEVYTIIRNSFEASFVTPGQRSELIAKLDA 342

Query: 66  YSFPSSPH 73
           +  P  PH
Sbjct: 343 HWHPGGPH 350


>sp|B2T672|ADE_BURPP Adenine deaminase OS=Burkholderia phytofirmans (strain DSM 17436 /
           PsJN) GN=Bphyt_3044 PE=3 SV=1
          Length = 350

 Score = 29.3 bits (64), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 8   LSLNVPDPAFESWLRDSSYLEILDTATTTSATAVTTA--STKETATTPSWTREFIGALRS 65
           +++N  DPA+     +++Y   +D      A   T    S + +  TP    E I  L +
Sbjct: 283 VTVNSDDPAYFGGYVNANYFATIDALKLNDAEVYTIIRNSFEASFVTPEQRSELIAKLDA 342

Query: 66  YSFPSSPH 73
           +  PS PH
Sbjct: 343 HWHPSGPH 350


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.126    0.374 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,842,919
Number of Sequences: 539616
Number of extensions: 1047516
Number of successful extensions: 5966
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 5759
Number of HSP's gapped (non-prelim): 206
length of query: 101
length of database: 191,569,459
effective HSP length: 70
effective length of query: 31
effective length of database: 153,796,339
effective search space: 4767686509
effective search space used: 4767686509
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)