Query 047994
Match_columns 101
No_of_seqs 20 out of 22
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 08:45:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047994.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047994hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2eap_A Lymphocyte cytosolic pr 68.2 1.4 4.7E-05 30.2 0.6 42 14-55 24-68 (90)
2 1vyk_A Oxygen-evolving enhance 36.7 27 0.00091 25.1 3.0 28 66-93 39-80 (149)
3 3fpn_B Geobacillus stearotherm 28.4 25 0.00086 23.1 1.6 27 2-28 9-39 (106)
4 2jdj_A HAPK, REDY-like protein 27.7 16 0.00056 25.2 0.6 16 11-26 13-28 (105)
5 1rij_A E6APN1 peptide; Trp-CAG 24.4 27 0.00092 18.9 0.9 12 14-25 3-14 (26)
6 1ci4_A Protein (barrier-TO-aut 23.3 23 0.0008 23.9 0.7 19 8-26 50-69 (89)
7 2f3n_A SH3 and multiple ankyri 23.1 39 0.0013 20.5 1.6 36 14-49 7-45 (76)
8 2ovg_A Phage lambda CRO; trans 22.0 21 0.00071 21.8 0.2 20 10-29 23-42 (66)
9 2hba_A BL17, 50S ribosomal pro 21.3 21 0.00073 21.6 0.1 8 85-92 24-31 (52)
10 2lmr_A ODIN, ankyrin repeat an 19.0 40 0.0014 22.3 1.1 42 8-49 23-70 (101)
No 1
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.21 E-value=1.4 Score=30.22 Aligned_cols=42 Identities=7% Similarity=0.039 Sum_probs=27.4
Q ss_pred chHHHHhhhhcch--hhHhhh-hccccccccccccccccCCCCCc
Q 047994 14 DPAFESWLRDSSY--LEILDT-ATTTSATAVTTASTKETATTPSW 55 (101)
Q Consensus 14 ~~afe~WlrDsg~--le~~d~-~~s~~aaa~~~t~~Dl~~~t~~W 55 (101)
..++..|||+.|| .|.+-+ +-.+-.+==.+|-.||+++|+.=
T Consensus 24 p~~VadWLkk~g~~~cd~lv~Kh~IDG~~lL~LtE~Dlrk~Pkl~ 68 (90)
T 2eap_A 24 PDSLADYFKKLNYKDCEKAVKKYHIDGARFLNLTENDIQKFPKLR 68 (90)
T ss_dssp TTTHHHHHHHTTCHHHHHHHHHTTCCHHHHHTCCHHHHTTSCTTT
T ss_pred HHHHHHHHHHcCCchHHHHHHHhccCchhhhcccHHHhccCCccc
Confidence 4678999999999 555542 22221111367778999988753
No 2
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=36.74 E-value=27 Score=25.12 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=22.8
Q ss_pred ccCCCChhhhhhhhhhhHHH--------------HhhhhHHh
Q 047994 66 YSFPSSPHTLKLRVHENVKR--------------YARNYASL 93 (101)
Q Consensus 66 YSfP~s~~qarlRv~eNvkr--------------Y~rNYa~l 93 (101)
|==|-|+.+|.-|+.+++++ |+|||+.+
T Consensus 39 ~~~~l~~~~a~~rIk~~a~~i~~vk~lI~k~~W~~vrn~LR~ 80 (149)
T 1vyk_A 39 YLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRL 80 (149)
T ss_dssp EECCCCHHHHHHHHHHHHHHHHTTHHHHHTTCHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Confidence 44467899999999999987 78888765
No 3
>3fpn_B Geobacillus stearothermophilus UVRB interaction domain; UVRA, nucleotide excision repair, DNA repair, DNA binding protein; 1.80A {Geobacillus stearothermophilus}
Probab=28.44 E-value=25 Score=23.11 Aligned_cols=27 Identities=26% Similarity=0.166 Sum_probs=19.9
Q ss_pred CccCCCcccccCc----hHHHHhhhhcchhh
Q 047994 2 VFASNPLSLNVPD----PAFESWLRDSSYLE 28 (101)
Q Consensus 2 ~F~~NPLSLsvp~----~afe~WlrDsg~le 28 (101)
.|..++|.|.+.+ .++.++|.+.||-.
T Consensus 9 ~~~~~~l~l~~G~~i~~~~l~~~L~~~GY~r 39 (106)
T 3fpn_B 9 EYRELVVSLRVGMEIERNALLRRLVDIQYDR 39 (106)
T ss_dssp ----CCEEEETTCBCCHHHHHHHHHHTTCEE
T ss_pred HHhhCCeEEECCCCcCHHHHHHHHHHcCCEE
Confidence 3678899998776 79999999999953
No 4
>2jdj_A HAPK, REDY-like protein; prodigiosin, biosynthesis, biosynthetic protein; 2.00A {Hahella chejuensis}
Probab=27.70 E-value=16 Score=25.18 Aligned_cols=16 Identities=31% Similarity=0.706 Sum_probs=13.6
Q ss_pred ccCchHHHHhhhhcch
Q 047994 11 NVPDPAFESWLRDSSY 26 (101)
Q Consensus 11 svp~~afe~WlrDsg~ 26 (101)
.++..+||+|.++..|
T Consensus 13 g~d~~aFe~w~~evD~ 28 (105)
T 2jdj_A 13 VAQADAFEFWVQNVDY 28 (105)
T ss_dssp GGGHHHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHhchh
Confidence 4678899999999875
No 5
>1rij_A E6APN1 peptide; Trp-CAGE, E6-binding domain, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.32.1.1
Probab=24.37 E-value=27 Score=18.94 Aligned_cols=12 Identities=25% Similarity=0.750 Sum_probs=9.1
Q ss_pred chHHHHhhhhcc
Q 047994 14 DPAFESWLRDSS 25 (101)
Q Consensus 14 ~~afe~WlrDsg 25 (101)
++-+-+||+|-|
T Consensus 3 qellgqwlkdgg 14 (26)
T 1rij_A 3 QELLGQWLKDGG 14 (26)
T ss_dssp HHHHHHHHHTTG
T ss_pred HHHHHHHHHcCC
Confidence 355779999976
No 6
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=23.30 E-value=23 Score=23.90 Aligned_cols=19 Identities=32% Similarity=0.686 Sum_probs=15.4
Q ss_pred cccccCchHHHHhhhhc-ch
Q 047994 8 LSLNVPDPAFESWLRDS-SY 26 (101)
Q Consensus 8 LSLsvp~~afe~WlrDs-g~ 26 (101)
|.|.=+++.|..||+|. |.
T Consensus 50 L~l~kd~~~F~~WLk~~~ga 69 (89)
T 1ci4_A 50 LVLKKDEDLFREWLKDTCGA 69 (89)
T ss_dssp HHTTTCHHHHHHHHHHHHCC
T ss_pred HHcCCCHHHHHHHHHHHhCc
Confidence 55666899999999997 64
No 7
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=23.09 E-value=39 Score=20.55 Aligned_cols=36 Identities=8% Similarity=0.079 Sum_probs=22.0
Q ss_pred chHHHHhhhhcc---hhhHhhhhcccccccccccccccc
Q 047994 14 DPAFESWLRDSS---YLEILDTATTTSATAVTTASTKET 49 (101)
Q Consensus 14 ~~afe~WlrDsg---~le~~d~~~s~~aaa~~~t~~Dl~ 49 (101)
.+.+..||+.-| |.+...+..-+...=..+|.+||+
T Consensus 7 ~~~V~~WL~~lgl~~Y~~~F~~~~idg~~Ll~Lt~~dL~ 45 (76)
T 2f3n_A 7 KFDVGDWLESIHLGEHRDRFEDHEIEGAHLPALTKEDFV 45 (76)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHTTCCGGGGGGCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHcCCCHHHHccCCHHHHH
Confidence 467899999987 444444433333333567777774
No 8
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=22.02 E-value=21 Score=21.79 Aligned_cols=20 Identities=10% Similarity=0.117 Sum_probs=16.1
Q ss_pred cccCchHHHHhhhhcchhhH
Q 047994 10 LNVPDPAFESWLRDSSYLEI 29 (101)
Q Consensus 10 Lsvp~~afe~WlrDsg~le~ 29 (101)
|.|-++++..|+|..+.+.+
T Consensus 23 L~vtQ~AVS~~ir~~r~v~L 42 (66)
T 2ovg_A 23 LGVYPSSINQAIHAGRKIFL 42 (66)
T ss_dssp HTSCHHHHHHHHHHTCEEEE
T ss_pred hCCCHHHHHHHHHhCCCcee
Confidence 78999999999987655544
No 9
>2hba_A BL17, 50S ribosomal protein L9; NTL9, K12M, RNA binding protein; 1.25A {Geobacillus stearothermophilus} SCOP: d.100.1.1 PDB: 1cqu_A 2hbb_A 2hvf_A
Probab=21.35 E-value=21 Score=21.60 Aligned_cols=8 Identities=38% Similarity=0.600 Sum_probs=6.1
Q ss_pred HHhhhhHH
Q 047994 85 RYARNYAS 92 (101)
Q Consensus 85 rY~rNYa~ 92 (101)
-|+|||..
T Consensus 24 GYaRN~Li 31 (52)
T 2hba_A 24 GYANNFLF 31 (52)
T ss_dssp HHHHHTTT
T ss_pred Cceehhhc
Confidence 48999864
No 10
>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling protein; NMR {Homo sapiens}
Probab=19.02 E-value=40 Score=22.29 Aligned_cols=42 Identities=12% Similarity=0.090 Sum_probs=26.0
Q ss_pred cccccCchHHHHhhhhcc---hhhHhhhhccccccc-c--cccccccc
Q 047994 8 LSLNVPDPAFESWLRDSS---YLEILDTATTTSATA-V--TTASTKET 49 (101)
Q Consensus 8 LSLsvp~~afe~WlrDsg---~le~~d~~~s~~aaa-~--~~t~~Dl~ 49 (101)
..-+.|...+.+||+.-| |.+..-+..-+.... . .+|-+||+
T Consensus 23 ~~~~~~~~~V~eWL~~LgL~qY~~~F~~~g~d~~e~l~~~~Lt~eDL~ 70 (101)
T 2lmr_A 23 SGLRTLEQSVGEWLESIGLQQYESKLLLNGFDDVHFLGSNVMEEQDLR 70 (101)
T ss_dssp CCCCCSSCCHHHHHHHHTCGGGHHHHHHTTCCCTTSTTTSCCCHHHHH
T ss_pred CCCCCCcccHHHHHHHCCCHHHHHHHHHcCCChHHHHhhccCCHHHHH
Confidence 445788889999999966 555555544433222 2 46655554
Done!