Query 047994
Match_columns 101
No_of_seqs 20 out of 22
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 08:45:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047994.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047994hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nzea_ a.24.18.1 (A:) Oxygen- 31.3 17 0.0012 22.9 2.8 27 67-93 3-43 (112)
2 d2gycf2 d.100.1.1 (F:1-58) Rib 20.2 8.9 0.00065 22.1 -0.3 8 85-92 24-31 (58)
3 d2j01i2 d.100.1.1 (I:1-55) Rib 19.6 11 0.00084 21.6 0.1 8 85-92 24-31 (55)
4 d2hbaa1 d.100.1.1 (A:1-52) Rib 19.5 12 0.00084 21.3 0.1 8 85-92 24-31 (52)
5 d1q79a2 d.218.1.3 (A:19-214) P 18.3 24 0.0018 24.1 1.7 23 4-26 4-33 (196)
6 d2iida1 c.3.1.2 (A:4-319,A:433 17.6 26 0.0019 21.6 1.5 19 5-23 1-19 (370)
7 d1x5wa1 g.37.1.1 (A:8-35) Zinc 16.5 26 0.0019 18.1 1.1 20 61-83 5-24 (28)
8 d2iw1a1 c.87.1.8 (A:2-371) Lip 15.3 33 0.0024 21.6 1.7 15 76-90 340-354 (370)
9 d2f3na1 a.60.1.2 (A:2-65) Sh3 14.1 40 0.0029 18.0 1.6 36 14-49 6-44 (64)
10 d2hzaa1 a.43.1.3 (A:1-48) Nick 14.1 27 0.002 19.4 0.9 20 8-27 4-26 (48)
No 1
>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=31.28 E-value=17 Score=22.91 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=20.0
Q ss_pred cCCCChhhhhhhhhhhHHH--------------HhhhhHHh
Q 047994 67 SFPSSPHTLKLRVHENVKR--------------YARNYASL 93 (101)
Q Consensus 67 SfP~s~~qarlRv~eNvkr--------------Y~rNYa~l 93 (101)
=-|-++.+|..|+.|+.+| |++||+.+
T Consensus 3 ~~~l~p~eaa~ri~~sa~~L~~l~~lI~k~~W~~v~~~Lr~ 43 (112)
T d1nzea_ 3 LQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRL 43 (112)
T ss_dssp CCCCCTTTHHHHHHHHHHHHHTTHHHHHTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 3467888888888888665 67777765
No 2
>d2gycf2 d.100.1.1 (F:1-58) Ribosomal protein L9 N-domain {Escherichia coli [TaxId: 562]}
Probab=20.17 E-value=8.9 Score=22.14 Aligned_cols=8 Identities=50% Similarity=0.858 Sum_probs=5.8
Q ss_pred HHhhhhHH
Q 047994 85 RYARNYAS 92 (101)
Q Consensus 85 rY~rNYa~ 92 (101)
-|+|||..
T Consensus 24 GyaRNyLi 31 (58)
T d2gycf2 24 GYARNFLV 31 (58)
T ss_dssp TTTTTTTT
T ss_pred chhHHHhc
Confidence 38888864
No 3
>d2j01i2 d.100.1.1 (I:1-55) Ribosomal protein L9 N-domain {Thermus thermophilus [TaxId: 274]}
Probab=19.58 E-value=11 Score=21.59 Aligned_cols=8 Identities=63% Similarity=0.924 Sum_probs=6.2
Q ss_pred HHhhhhHH
Q 047994 85 RYARNYAS 92 (101)
Q Consensus 85 rY~rNYa~ 92 (101)
-|+|||..
T Consensus 24 GyaRN~Li 31 (55)
T d2j01i2 24 GYARNYLL 31 (55)
T ss_dssp HHHHHTTT
T ss_pred hhHHHHhc
Confidence 58999864
No 4
>d2hbaa1 d.100.1.1 (A:1-52) Ribosomal protein L9 N-domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=19.49 E-value=12 Score=21.31 Aligned_cols=8 Identities=38% Similarity=0.600 Sum_probs=6.2
Q ss_pred HHhhhhHH
Q 047994 85 RYARNYAS 92 (101)
Q Consensus 85 rY~rNYa~ 92 (101)
-|+|||..
T Consensus 24 GyarN~Li 31 (52)
T d2hbaa1 24 GYANNFLF 31 (52)
T ss_dssp HHHHHTTT
T ss_pred cchhHhhc
Confidence 58999864
No 5
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=18.28 E-value=24 Score=24.09 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=19.4
Q ss_pred cCCCcccccCchH-------HHHhhhhcch
Q 047994 4 ASNPLSLNVPDPA-------FESWLRDSSY 26 (101)
Q Consensus 4 ~~NPLSLsvp~~a-------fe~WlrDsg~ 26 (101)
..-|+|+..|.+. +.++|++.|.
T Consensus 4 vT~PiS~~~Pt~~D~~~s~~L~~~L~~~~~ 33 (196)
T d1q79a2 4 ITSPISLAAPKETDCLLTQKLVETLKPFGV 33 (196)
T ss_dssp SSCCSCCCCCCHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCcccCCCChHHHHHHHHHHHHHHHcCC
Confidence 4579999999998 8999998774
No 6
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
Probab=17.62 E-value=26 Score=21.63 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=16.4
Q ss_pred CCCcccccCchHHHHhhhh
Q 047994 5 SNPLSLNVPDPAFESWLRD 23 (101)
Q Consensus 5 ~NPLSLsvp~~afe~WlrD 23 (101)
-|||+=|+-++..|+||+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (370)
T d2iida1 1 RNPLAECFQENDYEEFLEI 19 (370)
T ss_dssp CCTTGGGGCCTTHHHHHHH
T ss_pred CCchHhhcCCccHHHHHHH
Confidence 3999999999999999874
No 7
>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.53 E-value=26 Score=18.07 Aligned_cols=20 Identities=40% Similarity=0.524 Sum_probs=14.1
Q ss_pred cccccccCCCChhhhhhhhhhhH
Q 047994 61 GALRSYSFPSSPHTLKLRVHENV 83 (101)
Q Consensus 61 g~~~SYSfP~s~~qarlRv~eNv 83 (101)
|+.-|||-++ .|.+||||-|
T Consensus 5 c~ecsyscss---kaalrvh~ri 24 (28)
T d1x5wa1 5 CSECSYSCSS---KAALRIHERI 24 (28)
T ss_dssp CSSSSCEESS---HHHHHHHHGG
T ss_pred CcccccccCc---HHHHHHhhcc
Confidence 3445787654 6889999865
No 8
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]}
Probab=15.34 E-value=33 Score=21.58 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=11.2
Q ss_pred hhhhhhhHHHHhhhh
Q 047994 76 KLRVHENVKRYARNY 90 (101)
Q Consensus 76 rlRv~eNvkrY~rNY 90 (101)
+.+|.+|.++|+++|
T Consensus 340 ~~~~~~~ar~~~~~~ 354 (370)
T d2iw1a1 340 RMAWAENARHYADTQ 354 (370)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHh
Confidence 556778888888765
No 9
>d2f3na1 a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat domains 3 (Shank3) {Rat(Rattus norvegicus) [TaxId: 10116]}
Probab=14.13 E-value=40 Score=18.01 Aligned_cols=36 Identities=8% Similarity=0.079 Sum_probs=20.7
Q ss_pred chHHHHhhhhcc---hhhHhhhhcccccccccccccccc
Q 047994 14 DPAFESWLRDSS---YLEILDTATTTSATAVTTASTKET 49 (101)
Q Consensus 14 ~~afe~WlrDsg---~le~~d~~~s~~aaa~~~t~~Dl~ 49 (101)
..++..||+.-| |.+..-+..-+-..=..+|-+||+
T Consensus 6 ~~~V~~wL~~~gl~~y~~~F~~~~i~g~~L~~l~~~dL~ 44 (64)
T d2f3na1 6 KFDVGDWLESIHLGEHRDRFEDHEIEGAHLPALTKEDFV 44 (64)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHTTCCGGGGGGCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHCCCcHHHhhcCCHHHHH
Confidence 357889999977 444444444333332456656653
No 10
>d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=14.09 E-value=27 Score=19.42 Aligned_cols=20 Identities=15% Similarity=0.378 Sum_probs=14.4
Q ss_pred cccccCch---HHHHhhhhcchh
Q 047994 8 LSLNVPDP---AFESWLRDSSYL 27 (101)
Q Consensus 8 LSLsvp~~---afe~WlrDsg~l 27 (101)
+|+|+|+. .|++.++..||-
T Consensus 4 isVslp~~Ll~~lD~~v~~~gy~ 26 (48)
T d2hzaa1 4 VTITLDDDLLETLDSLSQRRGYN 26 (48)
T ss_dssp EEEEECHHHHHHHHHHHHHTTCC
T ss_pred EEEecCHHHHHHHHHHHHHcCCC
Confidence 47888885 566777777763
Done!