BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047998
(558 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H4Q|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With Trnapro(Cgg), Atp And Prolinol
pdb|1H4Q|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With Trnapro(Cgg), Atp And Prolinol
pdb|1H4S|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With Trnapro(Cgg) And A Prolyl-Adenylate Analogue
pdb|1H4S|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With Trnapro(Cgg) And A Prolyl-Adenylate Analogue
pdb|1HC7|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus
pdb|1HC7|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus
pdb|1HC7|C Chain C, Prolyl-Trna Synthetase From Thermus Thermophilus
pdb|1HC7|D Chain D, Prolyl-Trna Synthetase From Thermus Thermophilus
pdb|1H4T|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With L-Proline
pdb|1H4T|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With L-Proline
pdb|1H4T|C Chain C, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With L-Proline
pdb|1H4T|D Chain D, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With L-Proline
Length = 477
Score = 524 bits (1350), Expect = e-149, Method: Compositional matrix adjust.
Identities = 266/484 (54%), Positives = 341/484 (70%), Gaps = 11/484 (2%)
Query: 77 RERVITPRSQDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETG 136
+E+ +TP+SQDF+ WYL+VI AELADYGPVRGT+V+RPYGYAIWE IQ L+ FKETG
Sbjct: 3 KEKGLTPQSQDFSEWYLEVIQKAELADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETG 62
Query: 137 HSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQ 196
H N YFP FIP SF+ KEA HVEGFSPELA+VT GG+ELEE L VRPTSET++ +M+++
Sbjct: 63 HQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSK 122
Query: 197 WIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIY 256
WI S+RDLP L+NQW NV RWEMRT+PF+RT EFLWQEGHTAHAT EEAE+E +M+ IY
Sbjct: 123 WIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIY 182
Query: 257 TKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGDKRALQAGTSHNLGQNFSLAFGT 316
+ A E+ AIPVI G K++ E FAGA T TIEA+M D +ALQAGTSH LG+NF+ AF
Sbjct: 183 ARLAREYAAIPVIEGLKTEKEKFAGAVYTTTIEALMKDGKALQAGTSHYLGENFARAFDI 242
Query: 317 QFTDENGQRQHVWQTSWAISTRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEK 376
+F D + Q ++V TSW +S RF+G IIMTHGDD GL+LPPR+APIQVVIVPI+K + +
Sbjct: 243 KFQDRDLQVKYVHTTSWGLSWRFIGAIIMTHGDDRGLVLPPRLAPIQVVIVPIYKD-ESR 301
Query: 377 TGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVV 436
VL AA ++ L G+RV LDD DQ TPG+KF+ WE+KG+P R+E+GP+D+ G V
Sbjct: 302 ERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYKFHEWELKGVPFRVELGPKDLEGGQAV 361
Query: 437 ISRRDVPGKQGKVFGISMEPSILEAYVKDKLDEIQSALLERATSFRDSNIVDVSSYEELK 496
++ R + GK+ ++ + L + KLD L RA +FR+ + V +YE K
Sbjct: 362 LASR-LGGKE------TLPLAALPEALPGKLDAFHEELYRRALAFREDHTRKVDTYEAFK 414
Query: 497 EAISMGKWARGPWSASDADELKVKEETGATIRCFPFEQPQGNKTCFMTGNPAQ--EVALF 554
EA+ G +A A E ++EET AT RC PFE C G P+ + +F
Sbjct: 415 EAVQEG-FALAFHCGDKACERLIQEETTATTRCVPFEAEPEEGFCVRCGRPSAYGKRVVF 473
Query: 555 AKSY 558
AK+Y
Sbjct: 474 AKAY 477
>pdb|4HVC|A Chain A, Crystal Structure Of Human Prolyl-trna Synthetase In
Complex With Halofuginone And Atp Analogue
pdb|4HVC|B Chain B, Crystal Structure Of Human Prolyl-trna Synthetase In
Complex With Halofuginone And Atp Analogue
Length = 519
Score = 385 bits (989), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/499 (39%), Positives = 297/499 (59%), Gaps = 30/499 (6%)
Query: 84 RSQDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFP 143
+ ++ WY VI+ +E+ +Y + G ++RP+ YAIWEAI+D+ + + K+ G N YFP
Sbjct: 27 KEENLADWYSQVITKSEMIEYHDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFP 86
Query: 144 QFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRD 203
F+ S +EKE +HV F+PE+A VT G EL E + +RPTSET++ + +W+ S+RD
Sbjct: 87 MFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRD 146
Query: 204 LPLLVNQWANVTRWEMR-TKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYE 262
LP+ +NQW NV RWE + +PF+RT EFLWQEGH+A AT EEA +E +Q++D+Y + E
Sbjct: 147 LPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYEE 206
Query: 263 HTAIPVIAGRKSKVETFAGASRTYTIEAMM-GDKRALQAGTSHNLGQNFSLAFGTQFTDE 321
AIPV+ GRK++ E FAG T TIEA + RA+Q GTSH+LGQNFS F F D
Sbjct: 207 LLAIPVVKGRKTEKEKFAGGDYTTTIEAFISASGRAIQGGTSHHLGQNFSKMFEIVFEDP 266
Query: 322 N--GQRQHVWQTSWAISTRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIW----KKADE 375
G++Q +Q SW ++TR +G + M HGD+ GL+LPPR+A +QVVI+P ++
Sbjct: 267 KIPGEKQFAYQNSWGLTTRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSEED 326
Query: 376 KTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSV 435
K +++ + L IRV+ D D +PGWKFN WE+KG+P+R+E+GPRD+ S
Sbjct: 327 KEALIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQF 386
Query: 436 VISRRDVPGKQGKVFGISMEPSILEAYVKDKLDEIQSALLERATSFRDSNIVDVSSYEEL 495
V RRD K +++ + E ++ L++IQ L RA+ +++V ++ E+
Sbjct: 387 VAVRRDTGEK------LTVAENEAETKLQAILEDIQVTLFTRASEDLKTHMVVANTMEDF 440
Query: 496 KEAISMGKWARGPWSASDADELKVKEET-------------GATIRCFPFE---QPQGNK 539
++ + GK + P+ E +K+ T GA C PF+ + Q
Sbjct: 441 QKILDSGKIVQIPFCGEIDCEDWIKKTTARDQDLEPGAPSMGAKSLCIPFKPLCELQPGA 500
Query: 540 TCFMTGNPAQEVALFAKSY 558
C NPA+ LF +SY
Sbjct: 501 KCVCGKNPAKYYTLFGRSY 519
>pdb|3IAL|A Chain A, Giardia Lamblia Prolyl-Trna Synthetase In Complex With
Prolyl- Adenylate
pdb|3IAL|B Chain B, Giardia Lamblia Prolyl-Trna Synthetase In Complex With
Prolyl- Adenylate
Length = 518
Score = 291 bits (745), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 174/502 (34%), Positives = 270/502 (53%), Gaps = 24/502 (4%)
Query: 81 ITPRSQDFNAWYLDVISNAELADYG-PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSN 139
+T F W+ ++ AEL D PV+G +V RPYG+ + AI ++ + G S
Sbjct: 17 LTKTRDTFADWFDAIMDAAELVDRRYPVKGCVVFRPYGFFMENAIMRLCEEEYAKVGISQ 76
Query: 140 MYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIH 199
+ FP IP SF++KE+ H++GF E V GG + LEE+L +RPTSET + MF++W+
Sbjct: 77 ILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFSKWVR 136
Query: 200 SYRDLPLLVNQWANVTRWEMR-TKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTK 258
SY+DLPL ++Q + R E + TKP +R E W E H HAT E+A + +
Sbjct: 137 SYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKVIDT 196
Query: 259 FAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGDKRALQAGTSHNLGQNFSLAFGTQF 318
+ R+ + F GA + + +M R LQ HNLGQ FS F +
Sbjct: 197 IFSDELCFKGQKLRRVCWDRFPGADYSEVSDVVMPCGRVLQTAGIHNLGQRFSSTFDILY 256
Query: 319 TDENGQRQHVWQTSWAISTRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPI--WKKADEK 376
++ + H + T ISTR + + HGD GL+LPP IAPI VVI+PI KK +++
Sbjct: 257 ANKANESVHPYLTCAGISTRVLACALSIHGDSGGLVLPPLIAPIHVVIIPIGCGKKNNQE 316
Query: 377 TG--VLSAALSAKEVLQ-KSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSG 433
+ VL + L+ K G+RV +DD ++ G K ++E+KG+PLRIE+G RD+++G
Sbjct: 317 SDQQVLGKVNEIADTLKSKLGLRVSIDDDFSKSMGDKLYYYELKGVPLRIEVGQRDLANG 376
Query: 434 SVVISRRDVPGKQGKVFGIS--MEPS---------ILEAYVKDKLDEIQSALLERATSFR 482
++ RDV Q +V I+ M+ S +++ +KD+LD ++ L E+A +F
Sbjct: 377 QCIVVPRDVGKDQKRVIPITEVMKVSSHTTENHELVVKNVIKDELDAYKARLKEKAFAFH 436
Query: 483 DSNIVDVSSYEELKEAI-SMGKWARGPWSASDAD----ELKVKEETGATIRCF-PFEQPQ 536
+S + + S++E+ I + G AR P+ ++AD + K+K+ A IR P E
Sbjct: 437 NSMVTNCKSFDEIVACIENKGGLARFPFYTTEADGEVWDKKLKDACSAEIRGHNPDENVL 496
Query: 537 GNKTCFMTGNPAQEVALFAKSY 558
+ C ++G PA AKSY
Sbjct: 497 PGEVCALSGKPAVCYMYCAKSY 518
>pdb|1NJ1|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Cysteine
Sulfamoyl Adenylate
pdb|1NJ2|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus
pdb|1NJ5|A Chain A, Crystal Structure Of Prolyl-trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Proline
Sulfamoyl Adenylate
pdb|1NJ6|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Alanine
Sulfamoyl Adenylate
Length = 501
Score = 285 bits (728), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 174/481 (36%), Positives = 261/481 (54%), Gaps = 27/481 (5%)
Query: 87 DFNAWYLDVISNAELADYG-PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQF 145
+F+ W+ +++ AE+ D PV+G V P+G+ I + L + + H + FP
Sbjct: 39 EFSEWFHNILEEAEIIDQRYPVKGMHVWMPHGFMIRKNTLKILR-RILDRDHEEVLFPLL 97
Query: 146 IPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLP 205
+P + KEA HV+GF E+ VT GG +L+ KL +RPTSET++ MF W+ S+ DLP
Sbjct: 98 VPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLP 157
Query: 206 LLVNQWANVTRWEMR-TKPFVRTLEFL-WQEGHTAHATPEEAEKEAMQMIDIYTKFAYEH 263
+ Q N R+E + T+P +R E ++E HT HAT EAE++ + ++IY +F +
Sbjct: 158 MRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEF-FNS 216
Query: 264 TAIPVIAGRKSKVETFAGASRTYTIEAMMGDKRALQAGTSHNLGQNFSLAFGTQFTDENG 323
IP + R+ + F G+ T + +M D + LQ GT HNLGQ F+ F +F G
Sbjct: 217 LGIPYLITRRPPWDKFPGSEYTVAFDTLMPDGKTLQIGTVHNLGQTFARTFEIKFETPEG 276
Query: 324 QRQHVWQTSWAISTRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVP-IWKKADEKTGVLSA 382
++V QT + +S R + +I HGD++GL LPP +A QVVIVP I+KKA E+ V+ A
Sbjct: 277 DHEYVHQTCYGLSDRVIASVIAIHGDESGLCLPPDVAAHQVVIVPIIFKKAAEE--VMEA 334
Query: 383 ALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDV 442
+ L+ +G RV LDD D R G K+ WEM+G+PLR+EIGPRD+ G+ VISRRD
Sbjct: 335 CRELRSRLEAAGFRVHLDDRDIRA-GRKYYEWEMRGVPLRVEIGPRDLEKGAAVISRRDT 393
Query: 443 PGK-QGKVFGISMEPSILEAYVKDKLDEIQSALLERATSFRDSNIVDVSSYEELKEAISM 501
K + GI L +KD L+ +++ ER S ++ E L+EA +
Sbjct: 394 GEKVTADLQGIE---ETLRELMKDILENLRTRAWERMES-------EIREAETLEEASRI 443
Query: 502 GKWARG----PWSASDADELKVKEETGATIRCFPFEQPQGNKTCFMTGNPAQEVALFAKS 557
RG W + + V+E+ I Q +G+ TC G A A A++
Sbjct: 444 VDEKRGIISFMWCGEEECGMDVEEKVRVDILGI---QEEGSGTCINCGREAPYRAYLART 500
Query: 558 Y 558
Y
Sbjct: 501 Y 501
>pdb|1NJ8|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanocaldococcus Janaschii
pdb|1NJ8|B Chain B, Crystal Structure Of Prolyl-Trna Synthetase From
Methanocaldococcus Janaschii
pdb|1NJ8|C Chain C, Crystal Structure Of Prolyl-Trna Synthetase From
Methanocaldococcus Janaschii
pdb|1NJ8|D Chain D, Crystal Structure Of Prolyl-Trna Synthetase From
Methanocaldococcus Janaschii
Length = 459
Score = 282 bits (721), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 150/362 (41%), Positives = 215/362 (59%), Gaps = 15/362 (4%)
Query: 87 DFNAWYLDVISNAELADYG-PVRGTMVIRPYGYAI----WEAIQDYLNVKFKETGHSNMY 141
+F+ WY D++ AE+ D P++G V PYG+ I +E I++ L+ E+GH
Sbjct: 6 EFSEWYSDILEKAEIYDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLD----ESGHDEAL 61
Query: 142 FPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSY 201
FP IP + KEA H++GF E+ VT GG +L+ KL +RPTSET + +M W+ +
Sbjct: 62 FPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVH 121
Query: 202 RDLPLLVNQWANVTRWEMR-TKPFVRTLEFL-WQEGHTAHATPEEAEKEAMQMIDIYTKF 259
DLP+ + Q N R+E + T+P +R E + ++E HTAH+T EEAE + + I IY KF
Sbjct: 122 TDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKF 181
Query: 260 AYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGDKRALQAGTSHNLGQNFSLAFGTQFT 319
++ IP + ++ + + F GA T + + D R +Q T HNLGQNFS F F
Sbjct: 182 -FDTLGIPYLISKRPEWDKFPGAEYTMAFDTIFPDGRTMQIATVHNLGQNFSKTFEIIFE 240
Query: 320 DENGQRQHVWQTSWAISTRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGV 379
G + + +QT + IS R + II HGD+ GL+LPP +APIQVVIVP+ K E V
Sbjct: 241 TPTGDKDYAYQTCYGISDRVIASIIAIHGDEKGLILPPIVAPIQVVIVPLIFKGKEDI-V 299
Query: 380 LSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISR 439
+ A E L K RV +DD D R PG KFN WE+KG+PLRIE+GP+D+ + + + R
Sbjct: 300 MEKAKEIYEKL-KGKFRVHIDDRDIR-PGRKFNDWEIKGVPLRIEVGPKDIENKKITLFR 357
Query: 440 RD 441
RD
Sbjct: 358 RD 359
>pdb|2I4L|A Chain A, Rhodopseudomonas Palustris Prolyl-trna Synthetase
pdb|2I4L|B Chain B, Rhodopseudomonas Palustris Prolyl-trna Synthetase
pdb|2I4L|C Chain C, Rhodopseudomonas Palustris Prolyl-trna Synthetase
pdb|2I4M|A Chain A, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Proams
pdb|2I4M|B Chain B, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Proams
pdb|2I4M|C Chain C, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Proams
pdb|2I4N|A Chain A, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Cysams
pdb|2I4N|B Chain B, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Cysams
pdb|2I4N|C Chain C, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Cysams
pdb|2I4O|A Chain A, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Atp
pdb|2I4O|B Chain B, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Atp
pdb|2I4O|C Chain C, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Atp
Length = 458
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 5/153 (3%)
Query: 289 EAMMGDKRALQAGTSHNLGQNFSLAFGTQFTDENGQRQHVWQTSWAIS-TRFVGGIIMTH 347
EA + R ++ G G +S + T +G + S+ + +R +G II
Sbjct: 292 EANRLNTRGIEVGQIFYFGTKYSDSMKANVTGPDGTDAPIHGGSYGVGVSRLLGAIIEAC 351
Query: 348 GDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTP 407
DD G++ P +AP +V I+ + K+ D T L + L G+ V DD+DQR
Sbjct: 352 HDDNGIIWPEAVAPFRVTILNL-KQGDAATDAACDQLYRE--LSAKGVDVLYDDTDQRA- 407
Query: 408 GWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRR 440
G KF ++ GIP +I +GPR ++ G V + RR
Sbjct: 408 GAKFATADLIGIPWQIHVGPRGLAEGKVELKRR 440
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/145 (20%), Positives = 64/145 (44%), Gaps = 6/145 (4%)
Query: 115 PYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGK 174
P G+ + + I+ + + G + P + + + +E+ + + PE+ +
Sbjct: 64 PLGHRVLKKIEQIVREEQNRAGAIELLMPT-LQLADLWRESGRYDAYGPEMLRIA----D 118
Query: 175 ELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTK-PFVRTLEFLWQ 233
+ +L+ PT+E ++ +F +I SY+ LPL + R E R + +R EFL +
Sbjct: 119 RHKRELLYGPTNEEMITEIFRAYIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMK 178
Query: 234 EGHTAHATPEEAEKEAMQMIDIYTK 258
+ ++ A K +M Y +
Sbjct: 179 DAYSFDVDEAGARKSYNKMFVAYLR 203
>pdb|2J3L|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With A Prolyl-Adenylate Analogue
('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine)
pdb|2J3L|B Chain B, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With A Prolyl-Adenylate Analogue
('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine)
pdb|2J3M|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With Atp, Manganese And Prolinol
pdb|2J3M|B Chain B, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With Atp, Manganese And Prolinol
Length = 572
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 5/137 (3%)
Query: 296 RALQAGTSHNLGQNFSLAFGTQFTDENGQRQHVWQTSWAIS-TRFVGGIIMTHGDDTGLM 354
+ ++ G LG +S A G DENG+ + V + I +R + I+ + D+ G+
Sbjct: 404 KGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCYGIGVSRLLSAIVEQNADERGIN 463
Query: 355 LPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFW 414
P IAP + +V + K DE LS + A ++ ++G V +DD ++R G KF
Sbjct: 464 WPTGIAPFDLHVVQMNVK-DEYQTKLSQEVEA--MMTEAGYEVLVDDRNERA-GVKFADA 519
Query: 415 EMKGIPLRIEIGPRDVS 431
++ G P+RI +G + V
Sbjct: 520 DLIGCPIRITVGKKAVD 536
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 69/152 (45%), Gaps = 10/152 (6%)
Query: 94 DVISNAELADYGPVR----GTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYS 149
+V+S+ L G +R G P + E ++ + +F++ M P +P +
Sbjct: 19 EVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKTIMREEFEKIDAVEMLMPALLP-A 77
Query: 150 FIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVN 209
+ KE+ E + P L + ++ ++ PT E + I+SY+ LPL +
Sbjct: 78 ELWKESGRYETYGPNLYRLKDRNDRDY----ILGPTHEETFTELIRDEINSYKRLPLNLY 133
Query: 210 QWANVTRWEMRTKP-FVRTLEFLWQEGHTAHA 240
Q R E R++ +R EF+ ++G++ HA
Sbjct: 134 QIQTKYRDEKRSRSGLLRGREFIMKDGYSFHA 165
>pdb|1QF6|A Chain A, Structure Of E. Coli Threonyl-Trna Synthetase Complexed
With Its Cognate Trna
Length = 642
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 81/365 (22%), Positives = 144/365 (39%), Gaps = 64/365 (17%)
Query: 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKEL 176
G+ I+ ++ ++ K KE + + P + EK H + + + T +E
Sbjct: 270 GWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEK-TGHWDNYKDAM-FTTSSENREY 327
Query: 177 EEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWE--MRTKPFVRTLEFLWQE 234
++P + +F Q + SYRDLPL + ++ + R E +R F +
Sbjct: 328 ----CIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDD 383
Query: 235 GHTAHATPEEAEKEAMQMI----DIYTKFAYEHTAIPVIAGRKSKVET------------ 278
H T E+ E I D+Y+ F +E + + + ++ +
Sbjct: 384 AHI-FCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLA 442
Query: 279 ------------------FAGASRTYTIEAMMGDKRALQAGTSHNLGQNFSLA--FGTQF 318
F G +T+ + RA Q GT + +FSL +
Sbjct: 443 VALEENNIPFEYQLGEGAFYGPKIEFTLYDCL--DRAWQCGT---VQLDFSLPSRLSASY 497
Query: 319 TDENGQRQHVWQTSWAI---STRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADE 375
E+ +R+ AI RF+G I+T ++ P +AP+QVVI+ I E
Sbjct: 498 VGEDNERKVPVMIHRAILGSMERFIG--ILT--EEFAGFFPTWLAPVQVVIMNITDSQSE 553
Query: 376 KTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSV 435
L+ LS +GIRVK D +++ G+K ++ +P + G ++V SG V
Sbjct: 554 YVNELTQKLS------NAGIRVKADLRNEKI-GFKIREHTLRRVPYMLVCGDKEVESGKV 606
Query: 436 VISRR 440
+ R
Sbjct: 607 AVRTR 611
>pdb|1EVK|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With The Ligand Threonine
pdb|1EVK|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With The Ligand Threonine
pdb|1EVL|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1EVL|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1EVL|C Chain C, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1EVL|D Chain D, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1FYF|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase Complexed With A Seryl Adenylate Analog
pdb|1FYF|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase Complexed With A Seryl Adenylate Analog
pdb|1KOG|A Chain A, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|B Chain B, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|C Chain C, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|D Chain D, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|E Chain E, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|F Chain F, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|G Chain G, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|H Chain H, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
Length = 401
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 82/371 (22%), Positives = 145/371 (39%), Gaps = 76/371 (20%)
Query: 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKEL 176
G+ I+ ++ ++ K KE + + P + EK H + + + T +E
Sbjct: 29 GWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEK-TGHWDNYKDAM-FTTSSENREY 86
Query: 177 EEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWE--------MRTKPFVRTL 228
++P + +F Q + SYRDLPL + ++ + R E MR + F
Sbjct: 87 ----CIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFT--- 139
Query: 229 EFLWQEGHTAHATPEEAEKEAMQMI----DIYTKFAYEHTAIPVIAGRKSKVET------ 278
Q+ T E+ E I D+Y+ F +E + + + ++ +
Sbjct: 140 ----QDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDR 195
Query: 279 ------------------------FAGASRTYTIEAMMGDKRALQAGTSHNLGQNFSL-- 312
F G +T+ + RA Q GT + +FSL
Sbjct: 196 AEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCL--DRAWQCGT---VQLDFSLPS 250
Query: 313 AFGTQFTDENGQRQHVWQTSWAI---STRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPI 369
+ E+ +R+ AI RF+G I+T ++ P +AP+QVVI+ I
Sbjct: 251 RLSASYVGEDNERKVPVMIHRAILGSMERFIG--ILT--EEFAGFFPTWLAPVQVVIMNI 306
Query: 370 WKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRD 429
E L+ LS +GIRVK D +++ G+K ++ +P + G ++
Sbjct: 307 TDSQSEYVNELTQKLS------NAGIRVKADLRNEKI-GFKIREHTLRRVPYMLVCGDKE 359
Query: 430 VSSGSVVISRR 440
V SG V + R
Sbjct: 360 VESGKVAVRTR 370
>pdb|1NYQ|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYQ|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYR|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
pdb|1NYR|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
Length = 645
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 76/367 (20%), Positives = 137/367 (37%), Gaps = 59/367 (16%)
Query: 115 PYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEAS---HVEGFSPELALVTIG 171
P G I I+ Y+ K G+ ++Y P + + E P + L
Sbjct: 268 PNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQL---- 323
Query: 172 GGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR--TKPFVRTLE 229
+ E +V+RP + ++ HSYR+LP+ + + + R+E R
Sbjct: 324 ---DETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRG 380
Query: 230 FLWQEGHT---AHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETF------- 279
+ H EE ++ +ID+Y F +E + + E +
Sbjct: 381 MTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFEDYSFRLSYRDPEDKEKYFDDDDMW 440
Query: 280 -------------AGASRTYTI--EAMMGDKRALQAGTSHNLGQNFSLA---------FG 315
G S I A G K +Q T+ + S A F
Sbjct: 441 NKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLDFLLPERFD 500
Query: 316 TQFTDENGQRQH-VWQTSWAIST--RFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKK 372
+ ++G+ V +ST RFV + ++T P +AP QV I+P+
Sbjct: 501 LTYIGQDGEHHRPVVIHRGVVSTMERFVAFLT----EETKGAFPTWLAPKQVQIIPVNVD 556
Query: 373 ADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSS 432
A ++ L+ G+RV +DD +++ G+K +M+ IP +I +G ++V +
Sbjct: 557 LH-----YDYARQLQDELKSQGVRVSIDDRNEKM-GYKIREAQMQKIPYQIVVGDKEVEN 610
Query: 433 GSVVISR 439
V + +
Sbjct: 611 NQVNVRQ 617
>pdb|2DQ0|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Pyrococcus
Horikoshii Complexed With A Seryl-Adenylate Analog
pdb|2DQ0|B Chain B, Crystal Structure Of Seryl-Trna Synthetase From Pyrococcus
Horikoshii Complexed With A Seryl-Adenylate Analog
pdb|2ZR2|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Pyrococcus
Horikoshii Complexed With Atp
pdb|2ZR2|B Chain B, Crystal Structure Of Seryl-Trna Synthetase From Pyrococcus
Horikoshii Complexed With Atp
pdb|2ZR3|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Pyrococcus
Horikoshii
pdb|2ZR3|B Chain B, Crystal Structure Of Seryl-Trna Synthetase From Pyrococcus
Horikoshii
Length = 455
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 66/308 (21%), Positives = 123/308 (39%), Gaps = 37/308 (12%)
Query: 71 SQDRGNRERVITPRSQDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWE-AIQDYLN 129
Q +G E I + L+++ A+ A V G+ + Y + E I D
Sbjct: 144 EQSQGKMEYEILEWKPKLHVDLLEILGGADFARAAKVSGSR----FYYLLNEIVILDLAL 199
Query: 130 VKFK-----ETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRP 184
++F E G + + P ++ F+E+ ++ E F + V +E L + P
Sbjct: 200 IRFALDRLIEKGFTPV-IPPYMVRRFVEEGSTSFEDFEDVIYKVE-------DEDLYLIP 251
Query: 185 TSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEM-----RTKPFVRTLEFLWQEGHTAH 239
T+E + M I +DLPLL + R E TK R +F E +
Sbjct: 252 TAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVE-QFVY 310
Query: 240 ATPEEA----EKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMM-GD 294
+ PEE+ EK +++ + + + + G V A++ Y IEA M G
Sbjct: 311 SRPEESWEWHEKIIRNAEELFQELEIPYRVVNICTGDLGYV-----AAKKYDIEAWMPGQ 365
Query: 295 KRALQAGTSHNLGQNFSLAFGTQF---TDENGQRQHVWQTSWAISTRFVGGIIMTHGDDT 351
+ + ++ N + +F TDE + H ++ ++R + I+ H ++
Sbjct: 366 GKFREVVSASNCTDWQARRLNIRFRDRTDEKPRYVHTLNSTAIATSRAIVAILENHQEED 425
Query: 352 GLMLPPRI 359
G + P++
Sbjct: 426 GTVRIPKV 433
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,445,225
Number of Sequences: 62578
Number of extensions: 685952
Number of successful extensions: 1738
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1700
Number of HSP's gapped (non-prelim): 23
length of query: 558
length of database: 14,973,337
effective HSP length: 104
effective length of query: 454
effective length of database: 8,465,225
effective search space: 3843212150
effective search space used: 3843212150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)