Query 047998
Match_columns 558
No_of_seqs 294 out of 2152
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 05:17:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047998.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047998hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4163 Prolyl-tRNA synthetase 100.0 3E-134 7E-139 1023.9 30.9 530 4-558 2-551 (551)
2 PRK08661 prolyl-tRNA synthetas 100.0 3E-114 6E-119 940.7 51.4 473 78-558 4-477 (477)
3 TIGR00408 proS_fam_I prolyl-tR 100.0 1E-112 2E-117 926.8 48.0 469 81-558 1-472 (472)
4 COG0442 ProS Prolyl-tRNA synth 100.0 5E-87 1.1E-91 716.2 20.7 463 82-558 12-499 (500)
5 PRK12325 prolyl-tRNA synthetas 100.0 7.4E-68 1.6E-72 571.8 36.4 356 92-464 22-438 (439)
6 TIGR00409 proS_fam_II prolyl-t 100.0 9.5E-67 2.1E-71 576.4 37.5 356 92-464 22-566 (568)
7 PRK09194 prolyl-tRNA synthetas 100.0 4.1E-66 8.8E-71 574.6 38.4 356 92-464 22-561 (565)
8 PRK03991 threonyl-tRNA synthet 100.0 1E-62 2.2E-67 546.8 36.0 356 91-468 198-593 (613)
9 PRK14799 thrS threonyl-tRNA sy 100.0 7.9E-63 1.7E-67 540.6 33.3 368 77-469 113-533 (545)
10 PLN02837 threonine-tRNA ligase 100.0 6.8E-63 1.5E-67 552.0 33.2 366 77-468 192-609 (614)
11 PRK12444 threonyl-tRNA synthet 100.0 4.4E-60 9.5E-65 534.0 36.9 367 77-468 220-636 (639)
12 PRK12305 thrS threonyl-tRNA sy 100.0 4.7E-58 1E-62 512.5 34.4 367 77-469 151-571 (575)
13 PLN02908 threonyl-tRNA synthet 100.0 6.6E-58 1.4E-62 518.1 35.5 367 77-469 267-684 (686)
14 TIGR00418 thrS threonyl-tRNA s 100.0 1.2E-57 2.6E-62 508.2 36.1 363 77-464 145-560 (563)
15 PRK00413 thrS threonyl-tRNA sy 100.0 2.1E-54 4.5E-59 488.8 36.6 369 74-469 213-634 (638)
16 cd00778 ProRS_core_arch_euk Pr 100.0 2.8E-55 6.1E-60 443.9 22.4 259 87-345 1-260 (261)
17 cd00772 ProRS_core Prolyl-tRNA 100.0 3.5E-54 7.6E-59 436.2 27.6 259 87-346 1-264 (264)
18 PRK04173 glycyl-tRNA synthetas 100.0 1.8E-53 3.9E-58 460.4 29.4 357 92-466 7-455 (456)
19 COG0441 ThrS Threonyl-tRNA syn 100.0 3.7E-53 8.1E-58 462.4 30.0 366 77-469 165-582 (589)
20 cd00862 ProRS_anticodon_zinc P 100.0 2.1E-53 4.6E-58 414.1 24.2 200 352-558 1-202 (202)
21 KOG2324 Prolyl-tRNA synthetase 100.0 5.9E-51 1.3E-55 408.2 27.1 344 91-446 26-415 (457)
22 cd00779 ProRS_core_prok Prolyl 100.0 1.8E-50 3.9E-55 407.5 20.9 246 93-346 7-255 (255)
23 KOG1637 Threonyl-tRNA syntheta 100.0 3.1E-50 6.8E-55 414.2 20.8 364 82-468 143-556 (560)
24 cd00771 ThrRS_core Threonyl-tR 100.0 8.9E-49 1.9E-53 403.7 24.1 255 92-361 2-298 (298)
25 COG0124 HisS Histidyl-tRNA syn 100.0 1.6E-47 3.5E-52 406.2 27.0 335 103-467 3-428 (429)
26 cd00770 SerRS_core Seryl-tRNA 100.0 7.8E-45 1.7E-49 374.1 20.5 263 90-362 19-296 (297)
27 CHL00201 syh histidine-tRNA sy 100.0 1.1E-42 2.4E-47 375.3 30.0 336 104-470 4-421 (430)
28 TIGR00415 serS_MJ seryl-tRNA s 100.0 9.2E-44 2E-48 378.8 20.5 264 83-357 188-498 (520)
29 TIGR00414 serS seryl-tRNA synt 100.0 4.3E-43 9.3E-48 375.8 20.0 264 89-362 139-417 (418)
30 PRK05431 seryl-tRNA synthetase 100.0 1.6E-42 3.5E-47 372.1 19.0 270 84-363 130-416 (425)
31 PLN02734 glycyl-tRNA synthetas 100.0 1.8E-40 4E-45 365.6 29.2 365 85-468 71-662 (684)
32 TIGR00389 glyS_dimeric glycyl- 100.0 7.2E-40 1.6E-44 356.3 32.8 358 92-466 6-550 (551)
33 PLN02530 histidine-tRNA ligase 100.0 3.6E-40 7.9E-45 360.6 29.3 325 101-459 67-486 (487)
34 PRK14894 glycyl-tRNA synthetas 100.0 9E-40 2E-44 346.2 28.4 361 92-467 9-537 (539)
35 PRK00960 seryl-tRNA synthetase 100.0 6.3E-41 1.4E-45 362.2 18.9 268 83-361 188-502 (517)
36 PRK00037 hisS histidyl-tRNA sy 100.0 9E-38 1.9E-42 335.9 26.7 330 102-467 2-411 (412)
37 COG0423 GRS1 Glycyl-tRNA synth 100.0 2.7E-37 5.8E-42 325.7 27.1 365 90-469 7-553 (558)
38 PRK12420 histidyl-tRNA synthet 100.0 4.9E-36 1.1E-40 323.4 26.6 324 102-459 2-422 (423)
39 PLN02972 Histidyl-tRNA synthet 100.0 1.1E-35 2.3E-40 331.8 29.9 331 104-468 327-761 (763)
40 TIGR00442 hisS histidyl-tRNA s 100.0 3.2E-34 7E-39 307.0 28.3 314 106-443 2-397 (397)
41 KOG1936 Histidyl-tRNA syntheta 100.0 4.7E-34 1E-38 292.6 21.2 339 101-468 57-516 (518)
42 PLN02678 seryl-tRNA synthetase 100.0 4.2E-32 9.2E-37 290.6 19.6 273 89-369 140-432 (448)
43 cd00670 Gly_His_Pro_Ser_Thr_tR 100.0 9.6E-32 2.1E-36 267.1 19.9 224 117-344 1-235 (235)
44 PLN02320 seryl-tRNA synthetase 100.0 1.2E-30 2.5E-35 280.8 18.8 270 84-363 193-491 (502)
45 KOG2298 Glycyl-tRNA synthetase 100.0 1.1E-29 2.4E-34 262.7 16.0 352 104-469 32-594 (599)
46 PF00587 tRNA-synt_2b: tRNA sy 100.0 3E-29 6.5E-34 238.7 15.9 167 120-293 1-171 (173)
47 PRK12292 hisZ ATP phosphoribos 100.0 2.2E-27 4.9E-32 253.6 23.3 284 105-419 4-378 (391)
48 COG0172 SerS Seryl-tRNA synthe 99.9 2E-26 4.3E-31 242.9 19.0 267 86-362 136-418 (429)
49 PRK12421 ATP phosphoribosyltra 99.9 1.3E-24 2.8E-29 232.0 22.4 280 105-426 8-382 (392)
50 cd02426 Pol_gamma_b_Cterm C-te 99.9 5.9E-24 1.3E-28 192.4 12.9 116 344-468 10-127 (128)
51 cd00774 GlyRS-like_core Glycyl 99.9 3.4E-24 7.3E-29 216.3 10.4 157 93-266 2-167 (254)
52 PF09180 ProRS-C_1: Prolyl-tRN 99.9 3.3E-24 7.3E-29 172.3 6.2 67 492-558 1-68 (68)
53 KOG2509 Seryl-tRNA synthetase 99.9 3.3E-23 7.1E-28 214.5 13.9 265 90-362 152-432 (455)
54 cd00773 HisRS-like_core Class 99.9 5.3E-21 1.1E-25 193.8 16.6 135 118-261 2-137 (261)
55 TIGR00443 hisZ_biosyn_reg ATP 99.8 1.8E-20 3.9E-25 194.9 12.2 141 111-261 1-142 (314)
56 PRK12293 hisZ ATP phosphoribos 99.8 3.7E-19 7.9E-24 182.0 13.0 138 103-262 4-142 (281)
57 PF13393 tRNA-synt_His: Histid 99.8 8.1E-19 1.8E-23 182.0 14.1 142 109-261 1-144 (311)
58 cd00768 class_II_aaRS-like_cor 99.8 7.2E-18 1.6E-22 163.6 17.2 207 120-339 1-211 (211)
59 cd00858 GlyRS_anticodon GlyRS 99.7 2.9E-17 6.3E-22 147.4 11.9 103 353-467 18-120 (121)
60 COG0442 ProS Prolyl-tRNA synth 99.7 1.5E-17 3.2E-22 179.9 10.1 157 296-463 340-498 (500)
61 PF03129 HGTP_anticodon: Antic 99.7 6.3E-17 1.4E-21 138.2 10.1 94 363-466 1-94 (94)
62 PRK12295 hisZ ATP phosphoribos 99.7 7.2E-17 1.6E-21 171.2 12.5 128 121-262 7-136 (373)
63 PRK14938 Ser-tRNA(Thr) hydrola 99.7 1.3E-16 2.8E-21 165.8 13.3 134 318-464 228-364 (387)
64 cd00861 ProRS_anticodon_short 99.7 5E-16 1.1E-20 132.4 10.3 93 361-463 1-93 (94)
65 COG3705 HisZ ATP phosphoribosy 99.6 3.7E-15 7.9E-20 156.6 8.9 147 104-261 3-150 (390)
66 cd00860 ThrRS_anticodon ThrRS 99.6 2.6E-14 5.5E-19 120.8 11.3 90 361-463 1-90 (91)
67 PRK07080 hypothetical protein; 99.5 1.6E-12 3.6E-17 132.0 19.8 251 90-357 19-308 (317)
68 cd00738 HGTP_anticodon HGTP an 99.5 3.7E-13 8.1E-18 114.2 10.8 92 361-462 1-92 (94)
69 TIGR02367 PylS pyrrolysyl-tRNA 99.4 9E-13 2E-17 139.7 12.5 132 117-261 238-371 (453)
70 PRK12294 hisZ ATP phosphoribos 99.3 1.6E-11 3.4E-16 125.0 11.9 121 119-260 8-130 (272)
71 PRK09537 pylS pyrolysyl-tRNA s 99.2 4.9E-11 1.1E-15 126.9 12.2 115 118-244 203-319 (417)
72 cd00859 HisRS_anticodon HisRS 99.1 3E-10 6.5E-15 94.9 9.9 88 363-463 3-90 (91)
73 PRK04172 pheS phenylalanyl-tRN 99.1 1.5E-10 3.2E-15 127.6 9.0 139 108-259 223-401 (489)
74 PTZ00326 phenylalanyl-tRNA syn 98.9 3E-08 6.6E-13 107.7 16.4 147 108-259 219-408 (494)
75 PRK09350 poxB regulator PoxA; 98.7 2E-08 4.3E-13 104.3 7.6 118 117-253 4-124 (306)
76 cd00669 Asp_Lys_Asn_RS_core As 98.6 2.1E-07 4.6E-12 94.9 11.1 119 119-259 2-122 (269)
77 PF01409 tRNA-synt_2d: tRNA sy 98.4 2.7E-06 5.8E-11 85.7 12.9 118 117-241 15-136 (247)
78 KOG1035 eIF-2alpha kinase GCN2 98.3 7.8E-05 1.7E-09 87.3 22.8 131 111-260 925-1056(1351)
79 cd00777 AspRS_core Asp tRNA sy 98.2 7.6E-06 1.6E-10 84.1 11.1 119 119-258 2-121 (280)
80 PF00152 tRNA-synt_2: tRNA syn 98.2 2.5E-05 5.3E-10 82.3 13.4 126 117-259 21-147 (335)
81 PRK00488 pheS phenylalanyl-tRN 98.1 7.1E-05 1.5E-09 78.2 16.3 140 102-260 93-237 (339)
82 cd00776 AsxRS_core Asx tRNA sy 98.1 1.5E-05 3.2E-10 83.5 11.0 120 117-259 23-144 (322)
83 PRK06462 asparagine synthetase 97.9 5.6E-05 1.2E-09 79.6 10.8 126 117-260 29-159 (335)
84 TIGR00462 genX lysyl-tRNA synt 97.9 3.5E-05 7.6E-10 80.1 8.7 117 119-253 2-119 (304)
85 TIGR00459 aspS_bact aspartyl-t 97.9 6.4E-05 1.4E-09 84.2 11.3 120 117-259 137-259 (583)
86 TIGR00458 aspS_arch aspartyl-t 97.9 9.6E-05 2.1E-09 80.4 12.0 122 116-260 131-254 (428)
87 COG0016 PheS Phenylalanyl-tRNA 97.9 0.00017 3.7E-09 75.1 12.9 203 107-340 100-313 (335)
88 COG2269 Truncated, possibly in 97.9 2.4E-05 5.1E-10 78.6 6.2 121 118-254 16-136 (322)
89 cd00775 LysRS_core Lys_tRNA sy 97.9 0.00012 2.5E-09 77.1 11.7 119 118-259 8-129 (329)
90 PLN02903 aminoacyl-tRNA ligase 97.8 0.00013 2.9E-09 82.2 12.1 121 117-259 202-325 (652)
91 PRK00476 aspS aspartyl-tRNA sy 97.8 9.2E-05 2E-09 83.3 10.8 121 116-259 139-262 (588)
92 PRK05159 aspC aspartyl-tRNA sy 97.8 0.00019 4.1E-09 78.4 12.1 121 116-259 134-257 (437)
93 PTZ00417 lysine-tRNA ligase; P 97.7 0.00023 5E-09 79.8 11.6 115 118-253 253-367 (585)
94 PTZ00385 lysyl-tRNA synthetase 97.7 0.00022 4.9E-09 80.4 11.1 115 118-253 233-347 (659)
95 PRK00484 lysS lysyl-tRNA synth 97.7 0.0004 8.6E-09 76.8 12.9 122 116-259 170-293 (491)
96 PRK03932 asnC asparaginyl-tRNA 97.6 0.00042 9.1E-09 75.9 12.1 126 116-259 131-261 (450)
97 PRK12820 bifunctional aspartyl 97.6 0.00028 6E-09 80.4 10.7 120 116-257 154-275 (706)
98 TIGR00499 lysS_bact lysyl-tRNA 97.6 0.00032 6.8E-09 77.7 10.9 121 117-259 171-293 (496)
99 TIGR00457 asnS asparaginyl-tRN 97.6 0.00043 9.3E-09 75.8 11.1 125 117-259 135-264 (453)
100 TIGR00468 pheS phenylalanyl-tR 97.6 0.00053 1.1E-08 71.0 11.1 110 116-239 69-182 (294)
101 PRK12445 lysyl-tRNA synthetase 97.6 0.00034 7.3E-09 77.5 10.2 114 117-253 183-298 (505)
102 PLN02502 lysyl-tRNA synthetase 97.5 0.00056 1.2E-08 76.4 11.6 120 118-259 229-350 (553)
103 PLN02850 aspartate-tRNA ligase 97.5 0.00038 8.2E-09 77.5 10.2 120 117-259 224-346 (530)
104 COG0173 AspS Aspartyl-tRNA syn 97.5 0.00069 1.5E-08 73.9 11.6 122 116-260 139-263 (585)
105 PLN02603 asparaginyl-tRNA synt 97.5 0.00049 1.1E-08 76.9 10.7 124 118-259 226-375 (565)
106 PF12745 HGTP_anticodon2: Anti 97.5 0.00093 2E-08 68.3 11.7 98 361-470 5-109 (273)
107 cd00496 PheRS_alpha_core Pheny 97.5 0.0016 3.5E-08 64.4 12.8 102 121-240 3-113 (218)
108 PRK02983 lysS lysyl-tRNA synth 97.4 0.00079 1.7E-08 80.9 11.0 120 118-259 770-891 (1094)
109 COG0017 AsnS Aspartyl/asparagi 97.3 0.0021 4.5E-08 69.1 12.0 118 117-259 133-253 (435)
110 PTZ00425 asparagine-tRNA ligas 97.3 0.0019 4.1E-08 72.4 12.0 119 116-253 213-390 (586)
111 PLN02221 asparaginyl-tRNA synt 97.3 0.0016 3.6E-08 72.8 11.1 33 117-149 170-202 (572)
112 PLN02532 asparagine-tRNA synth 97.2 0.0019 4.2E-08 72.7 11.0 53 206-259 390-443 (633)
113 PLN02853 Probable phenylalanyl 97.2 0.018 4E-07 63.0 17.5 123 115-241 217-376 (492)
114 PTZ00401 aspartyl-tRNA synthet 97.1 0.0018 3.8E-08 72.4 9.4 121 117-259 212-334 (550)
115 KOG2411 Aspartyl-tRNA syntheta 96.6 0.005 1.1E-07 66.2 7.1 116 116-253 176-293 (628)
116 KOG1885 Lysyl-tRNA synthetase 96.5 0.0021 4.6E-08 68.6 3.5 113 117-252 224-338 (560)
117 COG1190 LysU Lysyl-tRNA synthe 96.5 0.0045 9.7E-08 67.2 6.0 105 117-245 179-286 (502)
118 TIGR00470 sepS O-phosphoseryl- 95.4 0.029 6.2E-07 60.8 6.3 76 179-259 182-259 (533)
119 KOG0556 Aspartyl-tRNA syntheta 94.8 0.046 1E-06 57.8 5.4 119 118-259 228-349 (533)
120 KOG0554 Asparaginyl-tRNA synth 94.6 0.1 2.3E-06 55.1 7.6 110 114-242 128-241 (446)
121 PRK09616 pheT phenylalanyl-tRN 93.7 0.65 1.4E-05 52.4 12.3 112 117-240 357-471 (552)
122 cd00769 PheRS_beta_core Phenyl 93.0 0.32 6.8E-06 47.3 7.4 88 122-218 3-91 (198)
123 KOG2784 Phenylalanyl-tRNA synt 91.0 0.18 4E-06 52.7 3.2 117 121-240 214-366 (483)
124 PLN02788 phenylalanine-tRNA sy 90.8 2.6 5.6E-05 45.6 11.8 108 115-239 64-179 (402)
125 PF09181 ProRS-C_2: Prolyl-tRN 85.8 1.2 2.6E-05 34.9 3.8 53 492-558 15-68 (68)
126 KOG0555 Asparaginyl-tRNA synth 84.5 3.2 7E-05 44.2 7.5 121 118-262 243-365 (545)
127 PRK06253 O-phosphoseryl-tRNA s 83.5 1.2 2.6E-05 49.3 4.1 39 180-219 184-222 (529)
128 TIGR00471 pheT_arch phenylalan 82.4 3.8 8.3E-05 46.3 7.7 111 117-239 360-472 (551)
129 PLN02265 probable phenylalanyl 78.7 5.9 0.00013 45.3 7.7 94 118-218 396-490 (597)
130 TIGR00469 pheS_mito phenylalan 78.4 12 0.00025 41.3 9.4 108 121-240 44-166 (460)
131 COG2024 Phenylalanyl-tRNA synt 72.1 0.67 1.5E-05 48.9 -1.9 65 86-153 14-81 (536)
132 COG1592 Rubrerythrin [Energy p 71.9 4.3 9.4E-05 38.5 3.6 52 466-553 113-164 (166)
133 COG0072 PheT Phenylalanyl-tRNA 64.9 30 0.00065 40.0 9.3 94 117-219 349-443 (650)
134 CHL00192 syfB phenylalanyl-tRN 63.7 18 0.0004 42.1 7.4 87 117-217 396-482 (704)
135 PRK00629 pheT phenylalanyl-tRN 58.7 32 0.00069 40.8 8.2 92 117-217 485-576 (791)
136 cd00003 PNPsynthase Pyridoxine 51.1 51 0.0011 33.1 7.0 73 336-425 72-150 (234)
137 TIGR00472 pheT_bact phenylalan 50.3 52 0.0011 39.1 8.2 87 123-216 495-581 (798)
138 TIGR00559 pdxJ pyridoxine 5'-p 50.0 55 0.0012 32.9 7.0 73 336-425 72-150 (237)
139 PRK05265 pyridoxine 5'-phospha 47.2 61 0.0013 32.6 6.9 63 359-425 85-153 (239)
140 PF03740 PdxJ: Pyridoxal phosp 44.7 57 0.0012 32.8 6.3 73 336-425 73-151 (239)
141 COG2238 RPS19A Ribosomal prote 38.8 68 0.0015 29.6 5.2 62 71-134 80-141 (147)
142 COG0854 PdxJ Pyridoxal phospha 36.0 1.3E+02 0.0028 30.0 7.0 62 360-425 84-151 (243)
143 cd05569 PTS_IIB_fructose PTS_I 32.2 1.7E+02 0.0038 24.8 6.6 77 381-468 16-92 (96)
144 PF14116 YyzF: YyzF-like prote 32.0 28 0.00061 26.1 1.4 16 537-552 32-47 (48)
145 PLN03194 putative disease resi 27.0 1.4E+02 0.0031 28.9 5.7 47 360-412 25-71 (187)
146 PHA02278 thioredoxin-like prot 26.6 53 0.0011 28.4 2.4 25 490-514 2-30 (103)
147 PF04052 TolB_N: TolB amino-te 26.0 1.2E+02 0.0026 25.8 4.6 78 359-437 10-92 (105)
148 PF01520 Amidase_3: N-acetylmu 25.4 2.7E+02 0.006 25.7 7.4 55 375-429 22-78 (175)
149 PRK09333 30S ribosomal protein 25.0 2.1E+02 0.0045 26.8 6.1 47 85-133 94-140 (150)
150 PF10367 Vps39_2: Vacuolar sor 23.8 1.7E+02 0.0037 24.6 5.2 20 453-472 23-42 (109)
151 PRK10427 putative PTS system f 23.5 3.4E+02 0.0074 24.0 7.0 80 382-471 21-100 (114)
152 PTZ00095 40S ribosomal protein 23.3 2.3E+02 0.005 27.0 6.1 49 84-132 117-165 (169)
153 cd02696 MurNAc-LAA N-acetylmur 22.4 3.6E+02 0.0078 24.9 7.5 53 377-429 25-79 (172)
154 COG5019 CDC3 Septin family pro 21.8 9.8E+02 0.021 25.8 11.1 114 364-483 163-292 (373)
155 cd02958 UAS UAS family; UAS is 20.4 5.4E+02 0.012 21.9 8.1 69 384-468 43-112 (114)
No 1
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-134 Score=1023.93 Aligned_cols=530 Identities=45% Similarity=0.793 Sum_probs=500.0
Q ss_pred ccCCCCcccCcccCCCccccchhhHHHhhhcccCCCCCcccccccccccCCCCCCchhhHHHHhhcccccCCCceeecC-
Q 047998 4 ALRLPSLHLTNLFSSSPCISRRSSAILRRHHRLRPPPTLTAGFSAQSAASSPPETDDKVVEIEKNRASQDRGNRERVIT- 82 (558)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~- 82 (558)
.++++++ |...+| ++. +..+++..+.++.+. ...+.++..-+.|++.++ +++. .+..|++
T Consensus 2 ~~~~~~~--t~~~~~---~~~--~~~~~~~~~~~~k~~--~~~~~k~~~~~~~~~~~~--~~~~--------~~~~gl~~ 62 (551)
T KOG4163|consen 2 SLRYKEV--TGQLFP---ATT--PATLVDFSCKVSKEA--KPKPKKPKKKAEPSKKSA--AVKK--------ATLLGLTA 62 (551)
T ss_pred ccccccc--cccccc---ccc--CccccchhccCCccc--CccccCcccccCcccccc--chhh--------hhhccccc
Confidence 3566777 776666 222 788888888888887 777888888888888872 1222 1344664
Q ss_pred CCCcchHHHHHHHHHhccccccCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccC
Q 047998 83 PRSQDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFS 162 (558)
Q Consensus 83 ~~~~~~~~wy~~~~~~a~l~d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~ 162 (558)
++++||++||.+++.+++|+||++++|||+++|+++.||+.|+.+++.++++.|++++|||+|++.+++++++.|+++|+
T Consensus 63 ~k~~df~~WY~qVitk~emieYydvsGcyilRP~s~aIWe~Iq~wfd~~ik~lGv~ncYFPmfVs~~~LEkEk~Hve~Fa 142 (551)
T KOG4163|consen 63 KKEEDFPEWYSQVITKGEMIEYYDVSGCYILRPWSYAIWEAIQDWFDAEIKKLGVKNCYFPMFVSKSVLEKEKDHVEGFA 142 (551)
T ss_pred ccccchHHHHHHHhhhhhhheeecccceEEecchHHHHHHHHHHHHHHHHHHhccccceeeeecCHHHHhhhhhhhccCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC-CCCccccceEEEecceeeeCC
Q 047998 163 PELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEFLWQEGHTAHAT 241 (558)
Q Consensus 163 ~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~-~rGllR~REF~q~d~h~~~~~ 241 (558)
||+.|||..|+.+|++++++|||||+.|+++|++|++||||||||+|||++|.|||.+ |.||||+|||+|||+|++|++
T Consensus 143 PEvAwVTr~G~seLeepiaiRPTSETvmyp~yakWi~ShRDLPlkLNQW~nVvRWEfk~p~PFlRtrEFLWQEGHTAfat 222 (551)
T KOG4163|consen 143 PEVAWVTRAGNSELEEPIAIRPTSETVMYPYYAKWIQSHRDLPLKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHTAFAT 222 (551)
T ss_pred cceEEEEecCCcccccceeeccCccceecHHHHHHHHhhccCchhhhhhhhheeeeccCCCcchhhhHHHHhcCcchhCC
Confidence 9999999999999999999999999999999999999999999999999999999999 889999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCceEEeecCCchhhccCCCcceEEEEEEcC-ccceeecceEecCcccccccCeEEeC
Q 047998 242 PEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD-KRALQAGTSHNLGQNFSLAFGTQFTD 320 (558)
Q Consensus 242 ~~~a~~e~~~il~~y~~l~~~~l~ipv~~g~k~~~ekf~Ga~~~~~ie~~~~d-gr~lq~gti~~Lg~~~s~~f~i~y~d 320 (558)
.++|++|+.+|+|+|.+++.++|++||+.|.|++.|+|+|+++|+++|+++++ ||++|.+|+|+||||||++|++.|.|
T Consensus 223 ~~eA~eEvlqiLdlYa~vy~ellAiPVvkGrKse~EkFaGgd~TttvEa~i~~~GrgiQgaTSH~LGQNFSkmF~i~~ed 302 (551)
T KOG4163|consen 223 PEEAEEEVLQILDLYARVYEELLAIPVVKGRKSEKEKFAGGDYTTTVEAFIPCSGRGIQGATSHHLGQNFSKMFEIVFED 302 (551)
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhccccccCccchhhhccCCcceEEEeeeeccccccccccchhhhhHHHHHhhceeecC
Confidence 99999999999999999999999999999999999999999999999999987 89999999999999999999999999
Q ss_pred C-CCceeeEeeeccchHHHHHHHHHHHhCCCCCCCCCCCCCCCcEEEEeCCCCc----chhHHHHHHHHHHHHHHhhCCc
Q 047998 321 E-NGQRQHVWQTSWAISTRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKA----DEKTGVLSAALSAKEVLQKSGI 395 (558)
Q Consensus 321 ~-~g~~~~v~~~s~Gi~eRli~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~----~~~~~~~~~a~~I~~~Lr~~Gi 395 (558)
+ +|.++++||+|||+++|.|++++|.||||+||+|||.+||+||+|||++-++ ++.+.+.++|..+...|..+||
T Consensus 303 ~~~g~~~fv~QnSWg~sTRtiGvmiM~HgDdkGLvLPPrVA~vQvVvvP~git~~~s~~~~~~l~~a~~~v~~~L~~~gi 382 (551)
T KOG4163|consen 303 PGEGEKEFVWQNSWGLSTRTIGVMIMTHGDDKGLVLPPRVAPVQVVVVPVGITDATSEEDKQELLDACSAVESRLLGAGI 382 (551)
T ss_pred CCccchhheeecccccccceeeEEEEEecCCcccccCCcccceEEEEEeccccccCchHHHHHHHHHHHHHHHHHhccCc
Confidence 8 7888899999999999999999999999999999999999999999997533 2367799999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEcCCCCccccccccccChHHHHHHHHHHHHHHHHHHH
Q 047998 396 RVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLDEIQSALL 475 (558)
Q Consensus 396 rv~vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~ll~~~~~~L~ 475 (558)
|++.|+|+++++||||++||++|||+||+|||+|+++++|++.+||+++|. +|++++|...|+++|++||.+||
T Consensus 383 R~~~D~rDnytpGwKfnhwElkGVPlRiEiGPrD~~~~qv~~VrRd~~~K~------~v~~~~l~~~v~elLe~iq~~m~ 456 (551)
T KOG4163|consen 383 RAEADLRDNYTPGWKFNHWELKGVPLRIEIGPRDLASNQVVAVRRDTGEKK------DVSLGDLEKTVKELLEKIQTNLY 456 (551)
T ss_pred eEeecccccCCCCccccceeecCceeEEEeccchhhhCeEEEEEccCCccc------ccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999997 89999999999999999999999
Q ss_pred HHHHHHhhcCeeecccHHHHHHHHhCCCEEEeeCCCChhhHHHHHHHh------------CCcccccccCCCCCCccccc
Q 047998 476 ERATSFRDSNIVDVSSYEELKEAISMGKWARGPWSASDADELKVKEET------------GATIRCFPFEQPQGNKTCFM 543 (558)
Q Consensus 476 ~rA~~~~~~~i~~v~~~ee~k~al~~~~~v~apwc~~~~ce~~ik~~~------------~a~~~cip~~~~~~~~~C~~ 543 (558)
++|++++++|++.|++|+||+++|++++++++||||..+||++||++| ||++|||||+||..+.+|++
T Consensus 457 ~kA~~~rds~~~~v~~~~eF~~aL~~k~iilaPwcg~~ecE~~IK~~s~r~e~ge~apsmGAKtlCiPf~qpe~~~kcl~ 536 (551)
T KOG4163|consen 457 EKAKEKRDSHIVKVNTWEEFVKALDQKKIILAPWCGEIECEKDIKKRTARDEDGEEAPSMGAKTLCIPFEQPELGEKCLC 536 (551)
T ss_pred HHHHHHhhhheeeeeeHHHHHHHhccCCEEEccccCcHHHHHHHHhhhccccCCCCcccCCceeeeecCCCCCCccceec
Confidence 999999999999999999999999999999999999999999999988 99999999999998899999
Q ss_pred cCCCcceEEEEeecC
Q 047998 544 TGNPAQEVALFAKSY 558 (558)
Q Consensus 544 ~g~~a~~~~~~~rsY 558 (558)
||+||+.|+||||||
T Consensus 537 cg~~ak~~~lfGRSY 551 (551)
T KOG4163|consen 537 CGKPAKKYTLFGRSY 551 (551)
T ss_pred cCCccceEEEecccC
Confidence 999999999999999
No 2
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.8e-114 Score=940.73 Aligned_cols=473 Identities=60% Similarity=1.015 Sum_probs=453.6
Q ss_pred eeecCCCCcchHHHHHHHHHhccccccCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcC
Q 047998 78 ERVITPRSQDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASH 157 (558)
Q Consensus 78 ~~~i~~~~~~~~~wy~~~~~~a~l~d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh 157 (558)
...++++++||++||++++++++|+|+++++|+++|+|.|+.+|++|++++++.++++||++|+||+|++.++|.+++||
T Consensus 4 ~~~~~~~~~~f~~w~~~~~~~~~l~d~~~v~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h 83 (477)
T PRK08661 4 VEKITPRSEDFSEWYNDVVKKAELADYSPVKGCMVIKPYGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEH 83 (477)
T ss_pred cccCCccccchHHHHHHHHHHccCcccCCCCceEEECccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred ccccCCceEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEeccee
Q 047998 158 VEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHT 237 (558)
Q Consensus 158 ~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~ 237 (558)
+++|.++||+|++.|+++++++++||||+|++|+.+|++|++||+|||+|+|||++|||||.+++||+|+|||+|+|+|+
T Consensus 84 ~~~f~~e~~~v~~~~~~~~~e~l~LrPtsE~~i~~~~~~~i~SyrdLPlrl~q~~~vfR~E~~~rgl~R~rEF~~~E~h~ 163 (477)
T PRK08661 84 VEGFAPEVAWVTHGGGEKLEEKLALRPTSETIIYPMYKKWIQSYRDLPLLYNQWVNVVRWETKTRPFLRTREFLWQEGHT 163 (477)
T ss_pred hhhcccccEEEEccCCCccCceEEEecCCcHHHHHHHHhhhcchhhcCHHHhcccceeeCCCCCCCcceeeeEEEcceee
Confidence 99999999999999988888999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCChHHHHHHHHHHHHHHHHHHHhhCCceEEeecCCchhhccCCCcceEEEEEEcCccceeecceEecCcccccccCeE
Q 047998 238 AHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGDKRALQAGTSHNLGQNFSLAFGTQ 317 (558)
Q Consensus 238 ~~~~~~~a~~e~~~il~~y~~l~~~~l~ipv~~g~k~~~ekf~Ga~~~~~ie~~~~dgr~lq~gti~~Lg~~~s~~f~i~ 317 (558)
||+++++|++|+..++++|.+++.+.|++|++.+.++.+++|.|+.++|++|++|+|||++|+||+|+||++||++|+++
T Consensus 164 ~~~~~eea~~e~~~~l~~y~~i~~~~Lglp~~~~~~~~~ekf~ga~~~~~ie~~~~dgr~~q~gt~~~Lg~~~s~~f~i~ 243 (477)
T PRK08661 164 AHATEEEAEEETLEMLEIYKEFFEDYLAIPVIIGKKTEWEKFAGADYTYTIEAMMPDGKALQAGTSHYLGQNFAKAFDIK 243 (477)
T ss_pred eeCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEecChHHhhCCCcceeEEEEEeCCCCEEEEEEecccccchhHhcCCE
Confidence 99999999999999999999999667999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCceeeEeeeccchHHHHHHHHHHHhCCCCCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEE
Q 047998 318 FTDENGQRQHVWQTSWAISTRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRV 397 (558)
Q Consensus 318 y~d~~g~~~~v~~~s~Gi~eRli~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv 397 (558)
|.|++|+.+++|++|||+++|+|++|+|+|+|++|++||+++||+||+|+|+..++++.+.+.++|.+|++.|+++||+|
T Consensus 244 y~d~~g~~~~v~~~s~G~~~R~i~alie~~~D~~Gl~lP~~iAP~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~GirV 323 (477)
T PRK08661 244 FQDKDGKLEYVHQTSWGVSTRLIGALIMTHGDDKGLVLPPKIAPIQVVIVPIFKKEEKKEEVLEYAKELAEELKKAGIRV 323 (477)
T ss_pred EECCCCCEeeeEEecccHHHHHHHHHHHHhCccCCCccCcccCCCeEEEEEecCCCcCCHHHHHHHHHHHHHHHHCCCEE
Confidence 99999999999999999999999999999999999999999999999999995432223458899999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEcCCCCccccccccccChHHHHHHHHHHHHHHHHHHHHH
Q 047998 398 KLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLDEIQSALLER 477 (558)
Q Consensus 398 ~vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~ll~~~~~~L~~r 477 (558)
++|+|.+.++|+||++|+++|+|++|+||++|+++|+|+|++|++++|. .+++++|.+.|+++|++||++||+|
T Consensus 324 ~lD~r~~~s~gkK~~~ae~~GvP~~IiIG~~ele~~~V~ik~rdtgek~------~v~~~el~~~l~~~l~~~~~~l~~~ 397 (477)
T PRK08661 324 KLDDRSDKTPGWKFNEWELKGVPLRIEIGPRDLENNTVVLVRRDTLEKE------TVPLDELVEKVPELLEEIQENLYEK 397 (477)
T ss_pred EEECCCCCCHHHHHHHHHHCCCCEEEEECcchhhcCeEEEEECCCCceE------EEEHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999444699999999999999999999999999999999999999887 7899999999999999999999999
Q ss_pred HHHHhhcCeeecccHHHHHHHH-hCCCEEEeeCCCChhhHHHHHHHhCCcccccccCCCCCCccccccCCCcceEEEEee
Q 047998 478 ATSFRDSNIVDVSSYEELKEAI-SMGKWARGPWSASDADELKVKEETGATIRCFPFEQPQGNKTCFMTGNPAQEVALFAK 556 (558)
Q Consensus 478 A~~~~~~~i~~v~~~ee~k~al-~~~~~v~apwc~~~~ce~~ik~~~~a~~~cip~~~~~~~~~C~~~g~~a~~~~~~~r 556 (558)
|+++++++|+.+++|+||++++ +++|||++||||+.+||++||++||||+|||||+++ +++|++||+||++|++|||
T Consensus 398 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~c~~~~~~~~~~~~~~~ 475 (477)
T PRK08661 398 AKEFLEENTVEVDTLEEFKEAIEEKGGFVKAPWCGDEECEEKIKEETGATIRCIPLEQE--KGKCIVCGKPAKKRVLFAK 475 (477)
T ss_pred HHHHHHhCeEEcCCHHHHHHHHHhCCCEEEEEecCCHHHHHHHHHHhCCEEEeEEcCCC--CCcccccCCccceEEEEEE
Confidence 9999999999999999999999 779999999999999999999999999999999987 5799999999999999999
Q ss_pred cC
Q 047998 557 SY 558 (558)
Q Consensus 557 sY 558 (558)
||
T Consensus 476 ~y 477 (477)
T PRK08661 476 AY 477 (477)
T ss_pred EC
Confidence 99
No 3
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=100.00 E-value=9.9e-113 Score=926.81 Aligned_cols=469 Identities=46% Similarity=0.787 Sum_probs=448.6
Q ss_pred cCCCCcchHHHHHHHHHhccccccCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccc
Q 047998 81 ITPRSQDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEG 160 (558)
Q Consensus 81 i~~~~~~~~~wy~~~~~~a~l~d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~ 160 (558)
++++++||++||++++.++||+|+++++|+++|+|.|+.+|++|++++++.++++||++|+||+|++.++|.++++|+++
T Consensus 1 ~~~~~~~f~~wy~~l~~~~~li~~~~~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~ 80 (472)
T TIGR00408 1 MASKMQDFSEWYHQILEKAEIIDYYPVKGCYVWLPYGFKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKG 80 (472)
T ss_pred CCcccccHHHHHHHHHHHcCCccccCCCceEEECcCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhh
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999887889999
Q ss_pred cCCceEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC-CCCccccceEEEecceeee
Q 047998 161 FSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEFLWQEGHTAH 239 (558)
Q Consensus 161 f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~-~rGllR~REF~q~d~h~~~ 239 (558)
|.++||+|++.|+++++++++||||+|++++.+|++|++||++||+|+|||++|||||.+ ++||+|+|||+|+|+|++|
T Consensus 81 f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~~i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~ 160 (472)
T TIGR00408 81 FEPEVYWITHGGLSKLDEPLALRPTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAH 160 (472)
T ss_pred cchhcEEEecCCCCccCCcEEEeCCCcHHHHHHHhccccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhh
Confidence 999999999999888888999999999999999999999999999999999999999999 7799999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhhCCceEEeecCCchhhccCCCcceEEEEEEcCccceeecceEecCcccccccCeEEe
Q 047998 240 ATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGDKRALQAGTSHNLGQNFSLAFGTQFT 319 (558)
Q Consensus 240 ~~~~~a~~e~~~il~~y~~l~~~~l~ipv~~g~k~~~ekf~Ga~~~~~ie~~~~dgr~lq~gti~~Lg~~~s~~f~i~y~ 319 (558)
+++++|++|+..++++|.+++.+.|++|+..+.++..++|+|+.++|++|++|+|||++|+||+|+||++||++|+++|.
T Consensus 161 ~~~e~a~~e~~~~l~~y~~i~~~~lglp~~~~~~~~~ek~~ga~~~~~~e~~~~dgr~~q~~t~~~Lg~~~sk~f~i~y~ 240 (472)
T TIGR00408 161 ATAEEAEEQVLRALDIYKEFIENSLAIPYFVGRKPEWEKFAGAEYTWAFETIMPDGRTLQIATSHNLGQNFAKTFEIKFE 240 (472)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhccCCeEEEEecCchhhcCCccceEEEeEEEcCCCEEEEeeeecccccccHhcCCEEE
Confidence 99999999999999999999986699999999998899999999999999999999999999999999999999999999
Q ss_pred CCCCceeeEeeeccchHHHHHHHHHHHhCCCCCCCCCCCCCCCcEEEEeCC-CCcchhHHHHHHHHHHHHHHhhCCcEEE
Q 047998 320 DENGQRQHVWQTSWAISTRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIW-KKADEKTGVLSAALSAKEVLQKSGIRVK 398 (558)
Q Consensus 320 d~~g~~~~v~~~s~Gi~eRli~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~-~~~~~~~~~~~~a~~I~~~Lr~~Girv~ 398 (558)
|++|+.+++|++|||++||+|++|+|+|+|++|++||+++||+||+|||+. .++ +.+++.++|.+|++.||++|++|+
T Consensus 241 ~~~g~~~~~h~~s~Gi~eRli~~lie~~~d~~gl~~P~~iaP~qV~Iipi~~~~~-~~~~~~~~A~~l~~~Lr~~girv~ 319 (472)
T TIGR00408 241 TPTGDKEYAYQTSYGISTRVIGALIAIHSDEKGLVLPPRVAPIQVVIIPIIFKKK-ENEKVMEAAREVRSRLKKAGFRVH 319 (472)
T ss_pred CCCCCEEeeEEccccHHHHHHHHHHHHhCCCCceeeChhhCcceEEEEEccCCCC-CCHHHHHHHHHHHHHHHHCCCEEE
Confidence 999999999999999889999999999999999999999999999999982 211 123588999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEcCCCCccccccccccChHHHHHHHHHHHHHHHHHHHHHH
Q 047998 399 LDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLDEIQSALLERA 478 (558)
Q Consensus 399 vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~ll~~~~~~L~~rA 478 (558)
+|+++. ++|+||++|+++|+|++|+||++|+++|+|+|++|++++|. .++++++.+.|.+++++||++||+||
T Consensus 320 lD~r~~-s~gkk~k~Ae~~GvP~~IiIG~~Ele~~~V~ik~rdt~eq~------~v~l~el~~~l~~~l~~~~~~l~~~a 392 (472)
T TIGR00408 320 IDDRDN-RPGRKFYQWEIKGIPLRIEVGPNDIEKNIAVISRRDTGEKY------QVSLDQLEERVVELLNNIQENLRNRA 392 (472)
T ss_pred EECCCC-CHHHHHHHHHHCCCCEEEEECcchhhCCeEEEEECCCCceE------EEEHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999985 99999999999999999999999999999999999999887 78999999999999999999999999
Q ss_pred HHHhhcCeeecccHHHHHHHHhC-CCEEEeeCCCChhhHHHHHHHhCCcccccccCCCCCCccccccCCCcceEEEEeec
Q 047998 479 TSFRDSNIVDVSSYEELKEAISM-GKWARGPWSASDADELKVKEETGATIRCFPFEQPQGNKTCFMTGNPAQEVALFAKS 557 (558)
Q Consensus 479 ~~~~~~~i~~v~~~ee~k~al~~-~~~v~apwc~~~~ce~~ik~~~~a~~~cip~~~~~~~~~C~~~g~~a~~~~~~~rs 557 (558)
+++++++|+.+++|+||++++++ +|||++||||+.+||++||++||||+||||++++ .+++|++||+||++|++||||
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~c~~~~~~~~~~~~~~~~ 471 (472)
T TIGR00408 393 WERFEQKIVIVETLEEIKQALNEKRGVVLVPWCGEEECEEDLKEKVQVTILCIPEDGD-VLQLCIFCGRKAPDYVLIART 471 (472)
T ss_pred HHHHHhCeEEcCCHHHHHHHHHhCCCEEEEEecCCHHHHHHHHHHhCCeEeEEECCCC-CCCccCccCCcccEEEEEEEe
Confidence 99999999999999999999976 4699999999999999999999999999999987 568999999999999999999
Q ss_pred C
Q 047998 558 Y 558 (558)
Q Consensus 558 Y 558 (558)
|
T Consensus 472 y 472 (472)
T TIGR00408 472 Y 472 (472)
T ss_pred C
Confidence 9
No 4
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5e-87 Score=716.24 Aligned_cols=463 Identities=33% Similarity=0.506 Sum_probs=424.2
Q ss_pred CCCCcchHHHHHHHHHhccccccCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCcccc
Q 047998 82 TPRSQDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGF 161 (558)
Q Consensus 82 ~~~~~~~~~wy~~~~~~a~l~d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f 161 (558)
....+||+.||+++|.+||++++ +++|+|.|+|.|+++|++|++++|++|++.|++|+++|+|+|.+|| +++|||++|
T Consensus 12 ~~~p~da~~~sh~ll~rAg~i~~-~~~G~y~~lP~g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLw-kEs~r~~~f 89 (500)
T COG0442 12 KEKPADASEWSHQLLLRAGMIRK-PVKGLYVWLPLGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELW-KESGRWEGF 89 (500)
T ss_pred cCCcchhHHHHHHHHHhcCceec-ccCceEEECccHHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHH-HHhChhhhc
Confidence 44568999999999999999998 8999999999999999999999999999999999999999996665 999999999
Q ss_pred CCceEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC-CCCccccceEEEecceeeeC
Q 047998 162 SPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEFLWQEGHTAHA 240 (558)
Q Consensus 162 ~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~-~rGllR~REF~q~d~h~~~~ 240 (558)
++||||++|+|+ ++++||||||+.|+.||++|++||+|||+++|||+++||||.+ ++||+|.|||+|+|+|+||+
T Consensus 90 ~~El~~v~drg~----~~l~L~PTsEe~it~~~~~~i~SYkdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~ 165 (500)
T COG0442 90 GPELFRVKDRGD----RPLALRPTSEEVITDMFRKWIRSYKDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHA 165 (500)
T ss_pred chhhEEEEccCC----ceeeeCCCcHHHHHHHHHHHhhhhhhCCcceeeeeeEEeccccCCCCccchheeeecccccccC
Confidence 999999999996 5899999999999999999999999999999999999999999 55999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhCCceEEeecCCchhhccCCCcceEEEEEEcCccceeecceEecCccccccc-CeEEe
Q 047998 241 TPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGDKRALQAGTSHNLGQNFSLAF-GTQFT 319 (558)
Q Consensus 241 ~~~~a~~e~~~il~~y~~l~~~~l~ipv~~g~k~~~ekf~Ga~~~~~ie~~~~dgr~lq~gti~~Lg~~~s~~f-~i~y~ 319 (558)
+.++|++++..++++|.+|| +++|+..+.++.+++|+|+.+|++++++++||+..|++|+|++|+||+++| +++|.
T Consensus 166 ~~e~a~~~y~~~~~~Y~~if---~~i~l~~~~~~ad~g~~Gg~~S~eF~~l~pd~ge~qi~ts~~y~aN~e~a~~~~~~~ 242 (500)
T COG0442 166 DEEDAEETYEKMLDAYSRIF---LRLPLIFGPVPADEGFIGGSYSHEFEALMPDGGEDQIATSHHYGANFEKAFIDIKFE 242 (500)
T ss_pred CHHHHHHHHHHHHHHHHHHH---HhCCceEEeecccCCCCCCccceEEEEEccCCCccEEEEecchHHhHHHhccCCCcc
Confidence 99999999999999999998 568888888899999999999999999999999999999999999999999 99999
Q ss_pred CCC-CceeeEeeeccchHHHHHHHHHHHhCCCCCCCCCCCCCCCcEEEEeCCCCcc-hhHHHHHHHHHHHHHHhhCCcEE
Q 047998 320 DEN-GQRQHVWQTSWAISTRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKAD-EKTGVLSAALSAKEVLQKSGIRV 397 (558)
Q Consensus 320 d~~-g~~~~v~~~s~Gi~eRli~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~~-~~~~~~~~a~~I~~~Lr~~Girv 397 (558)
+.+ +...++|++|||+++|.++++++.||||.|+++||.+||.||+++|+...+. +.....+++..+...|...++++
T Consensus 243 ~~~~~~~~~v~t~s~~~s~r~~~~~i~i~GDn~G~v~Pp~vA~~qV~~~~~~~~ga~~h~~~~~~~rd~~~~l~~~~~~~ 322 (500)
T COG0442 243 DEEEGELEYVHTTSYGISTRIIGAAILIHGDNEGLVLPPIVADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLGIRV 322 (500)
T ss_pred ccccccceEecccceEEEeeeeeEEEEEecCCCCccCCchhccceEEEEeccccCcchhhhhhhhhhhhhhhhhhcceEE
Confidence 987 7778999999999999999999999999999999999999999999875432 23347789999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEcCCCCccccccccccChHHHHHH-HHHHHHHHH--HHH
Q 047998 398 KLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAY-VKDKLDEIQ--SAL 474 (558)
Q Consensus 398 ~vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~-i~~ll~~~~--~~L 474 (558)
+.|+++..++|+||+.|+.+|||+++.||+++.++.+++|.+|++.++. ...++...+++. +.++++.+| ++|
T Consensus 323 ~~D~~~~~~~G~kl~~~e~ieVghif~lG~kyse~~~a~v~~r~g~~~~----~~mg~ygigvsr~v~a~ieq~~d~~gi 398 (500)
T COG0442 323 EGDDRSPDGPGFKLNIWEGIEVGHIFELGTKYSEAMNATVLDRDGKEQP----KTMGCYGIGVSRLVAALLEQIHDENGI 398 (500)
T ss_pred eccccCCCCCCceeeeeeccccCEEEEECchhhhhCeeEEEecCCCccc----eEEEehhhhhhhHHHHHHHHhcccccC
Confidence 9996644699999999999999999999999999999999999988742 126788889988 999999999 999
Q ss_pred HHH-HHHHhhcCeeecccHHHHHHHHh-CCCEEEeeCCCChhhHHHHH------HHhCCcccccccCCCC----CCc---
Q 047998 475 LER-ATSFRDSNIVDVSSYEELKEAIS-MGKWARGPWSASDADELKVK------EETGATIRCFPFEQPQ----GNK--- 539 (558)
Q Consensus 475 ~~r-A~~~~~~~i~~v~~~ee~k~al~-~~~~v~apwc~~~~ce~~ik------~~~~a~~~cip~~~~~----~~~--- 539 (558)
+.+ |++.++.+|+.+++- +++.... .++++.+||||+.+|+.+++ +.++|+++|||++... .++
T Consensus 399 ~w~~a~apf~~~iv~~n~~-~~~~~~~~~~~~~~l~~~G~~e~~~ddr~er~g~k~~~a~liGiP~~~~~g~~~~~g~~e 477 (500)
T COG0442 399 IWPKAIAPFDVHIVPVNTK-DFKQAEAAEKLYVELPWCGTVEVLLDDRDERPGVKFADADLIGIPLRIVVGKRLAEGEVE 477 (500)
T ss_pred ccccccCcceeEEEEcCch-hHHHHHHhhhHHHHHHhCCchhhhhhhhccccCccccCCeEecccceeeecccccCCcee
Confidence 999 999999999999887 4465554 45699999999999999999 7789999999998653 223
Q ss_pred -cccccCCCcce--EEEEeecC
Q 047998 540 -TCFMTGNPAQE--VALFAKSY 558 (558)
Q Consensus 540 -~C~~~g~~a~~--~~~~~rsY 558 (558)
+|..||.++.. +++|+|+|
T Consensus 478 ~k~r~~ge~~~~~~~~l~~~~~ 499 (500)
T COG0442 478 VKCRKCGEKEAVTIEALFARLY 499 (500)
T ss_pred EEecCCCchhhccHHHHHHHhh
Confidence 89999988776 88999887
No 5
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.4e-68 Score=571.81 Aligned_cols=356 Identities=21% Similarity=0.365 Sum_probs=311.9
Q ss_pred HHHHHHhccccccCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEec
Q 047998 92 YLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIG 171 (558)
Q Consensus 92 y~~~~~~a~l~d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~ 171 (558)
=+++|.++|+++. ..+|+++|+|.|+++|++|++++++++.++||++|.||+|++.++| +.+|||++|.+|||++++.
T Consensus 22 ~~~ll~r~g~~~~-~~~G~~~~lP~g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~-~~sg~~~~~~~emf~~~d~ 99 (439)
T PRK12325 22 SHRLMLRAGMIRQ-QAAGIYSWLPLGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLW-RESGRYDAYGKEMLRIKDR 99 (439)
T ss_pred HHHHHHHcCCccc-cCCceEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHH-hhcCCccccchhheEEecC
Confidence 4578889999975 4899999999999999999999999999999999999999999999 6789999999999999998
Q ss_pred CCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC-CCCccccceEEEecceeeeCChHHHHHHHH
Q 047998 172 GGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEFLWQEGHTAHATPEEAEKEAM 250 (558)
Q Consensus 172 g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~-~rGllR~REF~q~d~h~~~~~~~~a~~e~~ 250 (558)
++ ++++||||+|+.++.++++++.||++||+|+|||+++||+|.+ +.||+|+|||+|+|+|+||++.+++++++.
T Consensus 100 ~~----~~~~L~Pt~e~~~~~~~~~~~~syrdLPlrl~q~~~~fR~E~~~~~GL~R~reF~~~D~h~f~~~~~~a~~~~~ 175 (439)
T PRK12325 100 HD----REMLYGPTNEEMITDIFRSYVKSYKDLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLDEEGARHSYN 175 (439)
T ss_pred CC----CEEEEcCCCcHHHHHHHHHHhhhchhhchHheEecCEecCCCCCCCCccccceEeEeccEEEeCCHHHHHHHHH
Confidence 76 4899999999999999999999999999999999999999966 559999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCceEEee---cCC----------------chhhc----------cCCCc----------------c
Q 047998 251 QMIDIYTKFAYEHTAIPVIAG---RKS----------------KVETF----------AGASR----------------T 285 (558)
Q Consensus 251 ~il~~y~~l~~~~l~ipv~~g---~k~----------------~~ekf----------~Ga~~----------------~ 285 (558)
.++++|.+++.. |++|+... .++ +.+++ .|+.. .
T Consensus 176 ~~~~~~~~i~~~-lgl~~~~v~~~~~~~gg~~s~ef~~~~~~Ge~~~~~c~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 254 (439)
T PRK12325 176 RMFVAYLRTFAR-LGLKAIPMRADTGPIGGDLSHEFIILAETGESTVFYDKDFLDLLVPGEDIDFDVADLQPIVDEWTSL 254 (439)
T ss_pred HHHHHHHHHHHH-cCCceEEEEEccCCCCCCcceeeEeecCCCCceEEEcCCchhhccCCCcccCCHHHHHHHHhhhccc
Confidence 999999999876 77664221 110 01111 11111 1
Q ss_pred eEEEEE--------------EcCccceeecceEecCcccccccCeEEeCCCCceeeEeeeccch-HHHHHHHHHHHhCCC
Q 047998 286 YTIEAM--------------MGDKRALQAGTSHNLGQNFSLAFGTQFTDENGQRQHVWQTSWAI-STRFVGGIIMTHGDD 350 (558)
Q Consensus 286 ~~ie~~--------------~~dgr~lq~gti~~Lg~~~s~~f~i~y~d~~g~~~~v~~~s~Gi-~eRli~~lie~~~D~ 350 (558)
|..... +.+++++++|++|+||++|+++||++|.|.+|+.+++||+|||| ++|++++|+|+|+|+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~ievg~~~~lg~~ys~~f~~~y~d~~g~~~~i~~~~~GiGieRli~~l~e~~~d~ 334 (439)
T PRK12325 255 YAATEEMHDEAAFAAVPEERRLSARGIEVGHIFYFGTKYSEPMNAKVQGPDGKEVPVHMGSYGIGVSRLVAAIIEASHDD 334 (439)
T ss_pred ccchhhhhccCCCCcCCCcceeecceEEEEeeecCcccccHhcCCEEECCCCCEEeEEEeeeECCHHHHHHHHHHHhCcc
Confidence 111111 11367889999999999999999999999999999999999999 899999999999999
Q ss_pred CCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEEEEeCceec
Q 047998 351 TGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDV 430 (558)
Q Consensus 351 ~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl 430 (558)
+|++||+|+||+||+|+|+..++ ++..++|.+|++.|+++||+|++|+++ .++|+||++|+++|+|++||||++|+
T Consensus 335 ~g~~~P~~iaP~qV~Iipi~~~~---~~~~~~a~~i~~~L~~~Gi~v~~D~~~-~~lg~ki~~a~~~giP~~iiVG~~e~ 410 (439)
T PRK12325 335 KGIIWPESVAPFKVGIINLKQGD---EACDAACEKLYAALSAAGIDVLYDDTD-ERPGAKFATMDLIGLPWQIIVGPKGL 410 (439)
T ss_pred CCCcCCCCcCCeEEEEEecCCCC---HHHHHHHHHHHHHHHHCCCEEEEECCC-CCHhHHHHHHHHcCCCEEEEECCccc
Confidence 99999999999999999995432 247899999999999999999999998 59999999999999999999999999
Q ss_pred CCCeEEEEEcCCCCccccccccccChHHHHHHHH
Q 047998 431 SSGSVVISRRDVPGKQGKVFGISMEPSILEAYVK 464 (558)
Q Consensus 431 ~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~ 464 (558)
++|+|+|++|+++++. .++++++++.|+
T Consensus 411 ~~~~V~vr~r~~~~~~------~v~~~el~~~i~ 438 (439)
T PRK12325 411 AEGKVELKDRKTGERE------ELSVEAAINRLT 438 (439)
T ss_pred ccCeEEEEEcCCCceE------EEEHHHHHHHHh
Confidence 9999999999999886 788899877664
No 6
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=100.00 E-value=9.5e-67 Score=576.37 Aligned_cols=356 Identities=25% Similarity=0.403 Sum_probs=312.2
Q ss_pred HHHHHHhccccccCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEec
Q 047998 92 YLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIG 171 (558)
Q Consensus 92 y~~~~~~a~l~d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~ 171 (558)
=+++|.++|+++ +.++|+++|+|.|+++|++|+++++++|.++||++|.||+|++.++| +++|||+.|.+|||+|+|+
T Consensus 22 s~~ll~rag~i~-~~~~G~~~~lP~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~-~~sg~~~~~~~emf~~~dr 99 (568)
T TIGR00409 22 SHQLLLRAGFIR-RLGSGLYNWLPLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELW-QESGRWDTYGPELLRLKDR 99 (568)
T ss_pred hHHHHHhCCCcc-ccCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHH-hhcCCCCccchhcEEEecC
Confidence 368999999996 45799999999999999999999999999999999999999999999 6689999999999999998
Q ss_pred CCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecC-CCCCCccccceEEEecceeeeCChHHHHHHHH
Q 047998 172 GGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWE-MRTKPFVRTLEFLWQEGHTAHATPEEAEKEAM 250 (558)
Q Consensus 172 g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E-~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~ 250 (558)
+|+ .++||||+|+.++.++++++.||++||+++|||+++||+| +++.||+|+|||+|+|+|+||.+.+++++|+.
T Consensus 100 ~~~----~l~LrPT~Ee~~t~~~~~~i~syr~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~~~~a~~e~~ 175 (568)
T TIGR00409 100 KGR----EFVLGPTHEEVITDLARNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEESLDATYQ 175 (568)
T ss_pred CCC----EEEEcCCCcHHHHHHHHHHHhhccccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCChHHHHHHHH
Confidence 764 7999999999999999999999999999999999999999 55669999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCceEEee--cC-------C-----------------------------------c--h--------
Q 047998 251 QMIDIYTKFAYEHTAIPVIAG--RK-------S-----------------------------------K--V-------- 276 (558)
Q Consensus 251 ~il~~y~~l~~~~l~ipv~~g--~k-------~-----------------------------------~--~-------- 276 (558)
.|+++|.+++.. |++|+... +. + . .
T Consensus 176 ~~~~~y~~if~~-LgL~~~~v~~~~g~~gg~~s~ef~~~~~~ge~~i~~c~~~~y~an~e~a~~~~~~~~~~~~~~~~~~ 254 (568)
T TIGR00409 176 KMYQAYSNIFSR-LGLDFRPVQADSGAIGGSASHEFMVLAESGEDTIVYSDESDYAANIELAEALAPGERNAPTAELDKV 254 (568)
T ss_pred HHHHHHHHHHHH-hCCcceEEEeccccCCCccceEEeEecCCCceEEEEecCcccchhhhhhcccCccccccccccceee
Confidence 999999998865 66664221 00 0 0 0
Q ss_pred -------------------------------h------------------------------------------------
Q 047998 277 -------------------------------E------------------------------------------------ 277 (558)
Q Consensus 277 -------------------------------e------------------------------------------------ 277 (558)
+
T Consensus 255 ~tp~~~ti~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~v~~rgd~~vn~~k~~~~~g~~~~~~~a~~~~~~~~~g~~~g 334 (568)
T TIGR00409 255 DTPNTKTIAELVECFNLPAEKVVKTLLVKAVDKSEPLVALLVRGDHELNEVKAPNLLLVAQVLELATEEEIFQKIASGPG 334 (568)
T ss_pred cCCCCCcHHHHHHHhCCCHhHeeeEEEEEecCCccceEEEEecCcchhhHHHHHHHhccCcccccCCHHHHHHhhCCCCC
Confidence 0
Q ss_pred -----------------------hc-cCCCcc---e---------EE----E--------------EEEcCccceeecce
Q 047998 278 -----------------------TF-AGASRT---Y---------TI----E--------------AMMGDKRALQAGTS 303 (558)
Q Consensus 278 -----------------------kf-~Ga~~~---~---------~i----e--------------~~~~dgr~lq~gti 303 (558)
.| .||+++ | .. + ..+..+|++++||+
T Consensus 335 ~~gpv~~~~~~~i~~D~~~~~~~~~~~gan~~~~h~~~~~~~rd~~~~~~~d~~~~~eGd~cp~c~~~l~~~rgIEvGhi 414 (568)
T TIGR00409 335 SLGPVNINGGIPVLIDQTVALMSDFAAGANADDKHYFNVNWDRDVAIPEVADIRKVKEGDPSPDGQGTLKIARGIEVGHI 414 (568)
T ss_pred ccCccccccCceEEechhhhcccccccccCCCCceeecccccccCCccccchhhhhhccCCCCCCCCcccccceEEEEEe
Confidence 00 122211 1 00 0 00223589999999
Q ss_pred EecCcccccccCeEEeCCCCceeeEeeeccch-HHHHHHHHHHHhCCCCCCCCCCCCCCCcEEEEeCCCCcchhHHHHHH
Q 047998 304 HNLGQNFSLAFGTQFTDENGQRQHVWQTSWAI-STRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSA 382 (558)
Q Consensus 304 ~~Lg~~~s~~f~i~y~d~~g~~~~v~~~s~Gi-~eRli~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~ 382 (558)
|+||++||++|+++|.|++|+.++++|+|||| ++|+|++++|+|+|++|++||+++||+||+|+|+..++ ++..++
T Consensus 415 F~LG~kYS~~~~~~~~d~~g~~~~~~mgcyGIGvsRli~aiie~~~D~~Gl~wP~~iAP~qV~Iip~~~~~---~~~~~~ 491 (568)
T TIGR00409 415 FQLGTKYSEALKATFLDENGKNQFMTMGCYGIGVSRLVSAIAEQHHDERGIIWPKAIAPYDVVIVVMNMKD---EEQQQL 491 (568)
T ss_pred ccchhhhHHhcCCEEECCCCCEEEEEEeCCcchHHHHHHHHHHHhCccCCCcCChhhCCeEEEEEEcCCCh---HHHHHH
Confidence 99999999999999999999999999999999 89999999999999999999999999999999997543 247889
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEcCCCCccccccccccChHHHHHH
Q 047998 383 ALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAY 462 (558)
Q Consensus 383 a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~ 462 (558)
|.+|++.|+++|++|.+|||+ .++|+||++|+++|+|++|+||++++++|+|+|++|+++++. .|+++++++.
T Consensus 492 a~~l~~~L~~~gi~v~~DDr~-~~~G~K~~dadliGiP~~i~vG~~~l~~~~Vei~~R~~~~~~------~v~~~~l~~~ 564 (568)
T TIGR00409 492 AEELYSELLAQGVDVLLDDRN-ERAGVKFADSELIGIPLRVVVGKKNLDNGEIEVKKRRNGEKQ------LIKKDELVEC 564 (568)
T ss_pred HHHHHHHHHhCCCEEEEECCC-CCHHHHHHhhhhcCCCEEEEECCCcccCCeEEEEEcCCCceE------EEEHHHHHHH
Confidence 999999999999999999998 499999999999999999999999999999999999999887 7899999887
Q ss_pred HH
Q 047998 463 VK 464 (558)
Q Consensus 463 i~ 464 (558)
|.
T Consensus 565 i~ 566 (568)
T TIGR00409 565 LE 566 (568)
T ss_pred Hh
Confidence 74
No 7
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.1e-66 Score=574.57 Aligned_cols=356 Identities=26% Similarity=0.407 Sum_probs=311.3
Q ss_pred HHHHHHhccccccCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEec
Q 047998 92 YLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIG 171 (558)
Q Consensus 92 y~~~~~~a~l~d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~ 171 (558)
=+++|.++|+++. .++|+++|+|.|+++|++|+++++++++++||++|.||+|++.++| +++|||++|.+|||+|+|+
T Consensus 22 s~~ll~~ag~i~~-~~~G~~~~lP~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~-~~sg~~~~~~~emf~~~d~ 99 (565)
T PRK09194 22 SHQLLLRAGYIRK-LASGIYTYLPLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELW-QESGRWEEYGPELLRLKDR 99 (565)
T ss_pred hHHHHHhCCCccc-cCCCeeEECccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHH-hhcCCccccchhceEEecC
Confidence 4689999999975 5799999999999999999999999999999999999999999999 6689999999999999998
Q ss_pred CCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecC-CCCCCccccceEEEecceeeeCChHHHHHHHH
Q 047998 172 GGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWE-MRTKPFVRTLEFLWQEGHTAHATPEEAEKEAM 250 (558)
Q Consensus 172 g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E-~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~ 250 (558)
+++ +++||||+|+.++.++++++.||++||+|+|||+++||+| ++++||+|+|||+|+|+|+||.+.+++++++.
T Consensus 100 ~~~----~l~LrPt~e~~~~~~~~~~~~s~~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~~~~a~~~~~ 175 (565)
T PRK09194 100 HGR----DFVLGPTHEEVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLDETYD 175 (565)
T ss_pred CCC----EEEECCCChHHHHHHHHhhhhhcccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCChHHHHHHHH
Confidence 764 8999999999999999999999999999999999999999 55779999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCceEEeecCC---------------------------------chhh-------------------
Q 047998 251 QMIDIYTKFAYEHTAIPVIAGRKS---------------------------------KVET------------------- 278 (558)
Q Consensus 251 ~il~~y~~l~~~~l~ipv~~g~k~---------------------------------~~ek------------------- 278 (558)
.++++|.+++.. |++|+...... ..|+
T Consensus 176 ~~~~~~~~i~~~-lgl~~~~~~~~~g~~gg~~s~e~~~~~~~g~~~~~~c~~c~~~~n~e~a~~~~~~~~~~~~~~~~v~ 254 (565)
T PRK09194 176 AMYQAYSRIFDR-LGLDFRAVEADSGAIGGSASHEFMVLADSGEDTIVYSDESDYAANIEKAEALPPPRAAAEEALEKVD 254 (565)
T ss_pred HHHHHHHHHHHH-hCCccEEEEcccccCCCceeEEEEEecCCCceEEEEeCCCCcchhhhhhcccCCCCccccccceeec
Confidence 999999998865 67765432000 0000
Q ss_pred ------------c---------------------------------------cC---------------------C----
Q 047998 279 ------------F---------------------------------------AG---------------------A---- 282 (558)
Q Consensus 279 ------------f---------------------------------------~G---------------------a---- 282 (558)
+ .| .
T Consensus 255 ~p~~~t~~e~a~~lg~~~~~~~KtLi~~~~~~~~lvvvp~d~~vn~~kl~~~lg~~~l~~a~~eel~~~~g~~~G~v~P~ 334 (565)
T PRK09194 255 TPNAKTIEELAEFLNVPAEKTVKTLLVKADGELVAVLVRGDHELNEVKLENLLGAAPLELATEEEIRAALGAVPGFLGPV 334 (565)
T ss_pred CCCCCcHHHHHHHhCCCHHHeeEEEEEEeCCeEEEEEeecchhhhHHHHHhhcCCcccccCCHHHHHHhhCCCCCccCcc
Confidence 0 00 0
Q ss_pred ------------------------Cc---c---------eEE----EE------EE-cCc-------cceeecceEecCc
Q 047998 283 ------------------------SR---T---------YTI----EA------MM-GDK-------RALQAGTSHNLGQ 308 (558)
Q Consensus 283 ------------------------~~---~---------~~i----e~------~~-~dg-------r~lq~gti~~Lg~ 308 (558)
+. + |+. ++ .+ +++ |++++||+|+||+
T Consensus 335 Gl~~~v~viiD~sl~~~~~~~~gan~~g~h~~~~~~~~d~~~~~~~d~~~~~~g~~c~~c~~~l~~~~~iEvGh~f~lG~ 414 (565)
T PRK09194 335 GLPKDVPIIADRSVADMSNFVVGANEDDYHYVGVNWGRDFPVPEVADLRNVVEGDPSPDGGGTLKIARGIEVGHIFQLGT 414 (565)
T ss_pred cCCCCceEEEeccccccccccccCCCCCceeeCCccCcCCCcccccchhhhhcCCCCCCCCceeEEeeeEEEEEEecCCc
Confidence 00 0 000 00 00 222 8899999999999
Q ss_pred ccccccCeEEeCCCCceeeEeeeccch-HHHHHHHHHHHhCCCCCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHH
Q 047998 309 NFSLAFGTQFTDENGQRQHVWQTSWAI-STRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAK 387 (558)
Q Consensus 309 ~~s~~f~i~y~d~~g~~~~v~~~s~Gi-~eRli~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~ 387 (558)
+||++|+++|.|++|+.++++|+|||| ++|++++|+|+|+|++|++||+++||+||+|+|++.++ ++..++|.+|+
T Consensus 415 ~ys~~~~~~~~~~~g~~~~~~m~~~gIGv~Rli~al~e~~~d~~gl~~P~~iaP~~v~Iv~~~~~~---~~~~~~a~~i~ 491 (565)
T PRK09194 415 KYSEAMNATVLDENGKAQPLIMGCYGIGVSRLVAAAIEQNHDEKGIIWPKAIAPFDVHIVPVNMKD---EEVKELAEKLY 491 (565)
T ss_pred chhhccCCEEECCCCCEEeEEEeeEechHHHHHHHHHHhhccccCccCCCccCCceEEEEECCCCc---HHHHHHHHHHH
Confidence 999999999999999999999999999 89999999999999999999999999999999997432 24789999999
Q ss_pred HHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEcCCCCccccccccccChHHHHHHHH
Q 047998 388 EVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVK 464 (558)
Q Consensus 388 ~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~ 464 (558)
+.|+++|++|++|+++ .++|+||++|+++|+|++|+||++|+++|+|+|++|++++|. .|+++++.+.|.
T Consensus 492 ~~L~~~gi~v~~Ddr~-~~~g~k~~~ad~~GiP~~iiiG~~e~~~~~v~v~~r~~ge~~------~v~~~~l~~~i~ 561 (565)
T PRK09194 492 AELQAAGIEVLLDDRK-ERPGVKFADADLIGIPHRIVVGDRGLAEGIVEYKDRRTGEKE------EVPVDELVEFLK 561 (565)
T ss_pred HHHhccCCeEEEECCC-CCHHHHHHHHHhcCCCEEEEEcCccccCCeEEEEECCCCceE------EEeHHHHHHHHH
Confidence 9999999999999998 599999999999999999999999999999999999999887 799999887774
No 8
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=100.00 E-value=1e-62 Score=546.83 Aligned_cols=356 Identities=22% Similarity=0.285 Sum_probs=315.8
Q ss_pred HHHHHHHhccccccCC--CCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEE
Q 047998 91 WYLDVISNAELADYGP--VRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALV 168 (558)
Q Consensus 91 wy~~~~~~a~l~d~~~--vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~ 168 (558)
.|.+++++.+|+|+.+ ..|++.|+|.|+.|++.|++++++.+.++||++|.||.+...++| +.+||+++|.++||++
T Consensus 198 dH~~Lg~~~~L~d~~~~s~~G~~~~~P~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~-~~sgh~~~f~e~my~v 276 (613)
T PRK03991 198 PHVKLMREKELADYEPASDVGHMRYYPKGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHP-AIREHADKFGERQYRV 276 (613)
T ss_pred CHHHHHHHCCCcccccccCeeeEEEEcHHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHH-hhcccccccchhceEe
Confidence 8999999999999876 579999999999999999999999999999999999999999998 7799999999999999
Q ss_pred EecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEee-eeecCCC--CCCccccceEEEecceeeeCChHHH
Q 047998 169 TIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWAN-VTRWEMR--TKPFVRTLEFLWQEGHTAHATPEEA 245 (558)
Q Consensus 169 ~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~-vfR~E~~--~rGllR~REF~q~d~h~~~~~~~~a 245 (558)
++.+ ++++||||+|++++.+|++++.|||+||++++|+++ +||+|.+ ++||+|+|||+|.|+|+|+.+.++|
T Consensus 277 ~~~~-----e~l~Lrp~~c~~~~~~~~~~~~SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa 351 (613)
T PRK03991 277 KSDK-----KDLMLRFAACFGQFLMLKDMTISYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQA 351 (613)
T ss_pred cCCC-----ceEEEecCCCHHHHHHHhCCcCchhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECCHHHH
Confidence 7543 479999999999999999999999999999999999 9999999 4799999999999999996667999
Q ss_pred HHHHHHHHHHHHHHHHhhCCceEEeecCCchhhc------------------------cC--CCcceEEEEEE--cCccc
Q 047998 246 EKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETF------------------------AG--ASRTYTIEAMM--GDKRA 297 (558)
Q Consensus 246 ~~e~~~il~~y~~l~~~~l~ipv~~g~k~~~ekf------------------------~G--a~~~~~ie~~~--~dgr~ 297 (558)
.+|+..+++++.+++.. |++|+...... .++| .| +.+..++|+.+ ..||+
T Consensus 352 ~~e~~~~l~~~~~i~~~-lGl~~~~~~~~-t~df~~~~~~~l~~~l~~~g~~~~~~~~~g~~~~yg~kie~~~~d~~gr~ 429 (613)
T PRK03991 352 MEEFEKQYEMILETGED-LGRDYEVAIRF-TEDFYEENKDWIVELVKREGKPVLLEILPERKHYWVLKVEFAFIDSLGRP 429 (613)
T ss_pred HHHHHHHHHHHHHHHHH-cCCCeEEEecC-HHHHhhhHHHHHHHHHHHcCCCEEecccCCccccCcCcEEEEEeCCCCCE
Confidence 99999999999999876 78886543222 1111 12 12223456544 44899
Q ss_pred eeecceEecCcccccccCeEEeCCCCcee-e--EeeeccchHHHHHHHHHHHhCCC----CCCCCCCCCCCCcEEEEeCC
Q 047998 298 LQAGTSHNLGQNFSLAFGTQFTDENGQRQ-H--VWQTSWAISTRFVGGIIMTHGDD----TGLMLPPRIAPIQVVIVPIW 370 (558)
Q Consensus 298 lq~gti~~Lg~~~s~~f~i~y~d~~g~~~-~--v~~~s~Gi~eRli~~lie~~~D~----~Gl~lP~~lAP~qV~Iipi~ 370 (558)
+|+||+| +|++++++||++|.|.+|+.+ + +|..++|+++|+|++|+|+|+|+ +|++||+|+||+||+|||++
T Consensus 430 ~q~~T~q-ld~~~~~~f~l~y~d~~g~~~~Pviih~~~~GsieR~i~aliE~~~~~~~~g~gl~~P~~lAP~qV~IIpi~ 508 (613)
T PRK03991 430 IENPTVQ-IDVENAERFGIKYVDENGEEKYPIILHCSPTGSIERVIYALLEKAAKEEEEGKVPMLPTWLSPTQVRVIPVS 508 (613)
T ss_pred EEEeeee-cCcccchhCCCEEECCCCCEeeCEEEEECCEeHHHHHHHHHHHHhCCccccCceeEcCccccCceEEEEEeC
Confidence 9999998 999999999999999999874 3 45667888999999999999998 89999999999999999996
Q ss_pred CCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEcCCCCcccccc
Q 047998 371 KKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVF 450 (558)
Q Consensus 371 ~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~ 450 (558)
++ ..++|.+|++.||++|++|++|+++ .++|+||++|++.|+|++|+||++|+++|+|+|++|+++++.
T Consensus 509 e~------~~~~A~eIa~~Lr~~GirV~lDdr~-~slgkKir~A~~~GiP~iIVIG~kEle~g~VtVr~R~t~eq~---- 577 (613)
T PRK03991 509 ER------HLDYAEEVADKLEAAGIRVDVDDRD-ESLGKKIRDAGKEWIPYVVVIGDKEMESGKLTVTIREESEKV---- 577 (613)
T ss_pred HH------HHHHHHHHHHHHHhCCCEEEEECCC-CCHHHHHHHHHHcCCCEEEEECcchhhCCeEEEEECCCCceE----
Confidence 43 7899999999999999999999998 599999999999999999999999999999999999999876
Q ss_pred ccccChHHHHHHHHHHHH
Q 047998 451 GISMEPSILEAYVKDKLD 468 (558)
Q Consensus 451 ~v~v~~~el~~~i~~ll~ 468 (558)
.++++++++.|+++++
T Consensus 578 --~v~l~eli~~l~~~~~ 593 (613)
T PRK03991 578 --EMTLEELIERIKEETK 593 (613)
T ss_pred --EeeHHHHHHHHHHHHh
Confidence 7888999888877765
No 9
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.9e-63 Score=540.58 Aligned_cols=368 Identities=20% Similarity=0.309 Sum_probs=313.4
Q ss_pred ceeecCCCCcchHHHHHHHHHhcccccc------------C--CCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeec
Q 047998 77 RERVITPRSQDFNAWYLDVISNAELADY------------G--PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYF 142 (558)
Q Consensus 77 ~~~~i~~~~~~~~~wy~~~~~~a~l~d~------------~--~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~t 142 (558)
++||+++++++.++.|.+.+++|+..|| . .++|+++|+|.|+.+|+.|++++++.+.++||++|.|
T Consensus 113 Riyg~~f~~~~~l~~~~~~~eea~~rdHr~lg~~l~lf~~~~~~~~G~~~~lP~G~~i~~~L~~~~r~~~~~~Gy~eV~T 192 (545)
T PRK14799 113 RIRGVAFETEEQLKDYLTWLEKAEETDHRLIGEKLDLFSFHEEAGSGLVLFHPKGQTIRNELIAFMREINDSMGYQEVYT 192 (545)
T ss_pred EEEEeecCCHHHHHHHHHHHHhcccCCHHHHHHHcCCcccccccCCcceEEcChHHHHHHHHHHHHHHHHHHcCCeEEEC
Confidence 7899999998888888888888876554 2 3789999999999999999999999999999999999
Q ss_pred CccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC--
Q 047998 143 PQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-- 220 (558)
Q Consensus 143 P~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~-- 220 (558)
|+|...++| +.|||+++|.++||++ +.++ ++++||||+|++++.+|+++.+|||+||+|+||||+|||||.+
T Consensus 193 P~i~~~eL~-k~SGh~~~y~~~mf~~-~~~~----e~~~LrPm~cp~~~~~~~~~~~SyrdLPlR~~e~g~vfR~E~sg~ 266 (545)
T PRK14799 193 SHVFKTDIW-KISGHYTLYRDKLIVF-NMEG----DEYGVKPMNCPAHILIYKSKPRTYRDLPIRFSEFGHVYRWEKKGE 266 (545)
T ss_pred CccchHHHH-hhccccccchhhccee-eccC----ceEEeccCCCHHHHHHHhccccChhhCCHhhEEecceecCCCCCC
Confidence 999999999 5699999999999999 4444 4899999999999999999999999999999999999999999
Q ss_pred CCCccccceEEEecceeeeCChHHHHHHHHHHHH----HHHHHHHhhCCceEEeecC--------Cchhhc---------
Q 047998 221 TKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMID----IYTKFAYEHTAIPVIAGRK--------SKVETF--------- 279 (558)
Q Consensus 221 ~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il~----~y~~l~~~~l~ipv~~g~k--------~~~ekf--------- 279 (558)
++||+|+|||+|+|+|+| |+++++.+|+..+++ +|+.|+.+...+++....+ ..|+++
T Consensus 267 l~GL~RvReF~Q~DaHif-~~~~q~~~E~~~~l~~i~~vy~~fG~~~~~~~i~ls~Rpe~~~G~~~~wdka~~~l~~~L~ 345 (545)
T PRK14799 267 LYGLLRVRGFVQDDGHIF-LREDQLREEIKMLISKTVEVWHKFGFKDDDIKPYLSTRPDESIGSDELWEKATNALISALQ 345 (545)
T ss_pred ccccccceeEEEcccEEE-eCHHHHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEcChhhhcCCHHHHHHHHHHHHHHHH
Confidence 569999999999999997 889999888877654 5555554322234433221 123332
Q ss_pred -----------cCCCcceEEEEEEcC--ccceeecceEecCcccccccCeEEeCCCCce---eeEeeeccchHHHHHHHH
Q 047998 280 -----------AGASRTYTIEAMMGD--KRALQAGTSHNLGQNFSLAFGTQFTDENGQR---QHVWQTSWAISTRFVGGI 343 (558)
Q Consensus 280 -----------~Ga~~~~~ie~~~~d--gr~lq~gti~~Lg~~~s~~f~i~y~d~~g~~---~~v~~~s~Gi~eRli~~l 343 (558)
.|+.+...++..+.| ||.+|++|++ ++++++++|+++|.+.+|+. ..+|++++|.+||++++|
T Consensus 346 ~~gl~~~~~~g~gafygpkiD~~v~dalgr~~q~~Tiq-ldf~lp~rf~Ley~~~~~~~~~pv~ihr~~~GgiERli~iL 424 (545)
T PRK14799 346 ESGLKFGIKEKEGAFYGPKIDFEIRDSLGRWWQLSTIQ-VDFNLPERFKLEYIDKDGIKKRPVMVHRAIYGSIDRFVAIL 424 (545)
T ss_pred HcCCCeEEecceeccccCccceEehhhcCchhhhhhhh-hhcCcccccceEEEcCCCCCcccEEEEccCCCCHHHHHHHH
Confidence 123333345666666 8999999999 99999999999999988854 368889999999999999
Q ss_pred HHHhCCCCCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEEE
Q 047998 344 IMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRI 423 (558)
Q Consensus 344 ie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~~I 423 (558)
++++. | .||+|++|.||+|+|+++. ..++|.+|++.||++|++|++|+++ .++|+|+++|++.|+|++|
T Consensus 425 ~e~~~---G-~~P~wlaP~qV~Iipi~e~------~~~~A~~Ia~~LR~~GirVelD~~~-~~lgkkir~A~k~gip~vi 493 (545)
T PRK14799 425 LEHFK---G-KLPTWLSSVQVRVLPITDE------VNEYAEKVLNDMRKRRIRAEIDYAG-ETLSKRIKNAYDQGVPYIL 493 (545)
T ss_pred HHHcC---C-CCCCCCCCceEEEEEcCHH------HHHHHHHHHHHHHhCCCEEEEECCC-CCHHHHHHHHHHcCCCEEE
Confidence 87642 4 7999999999999999643 6789999999999999999999997 5999999999999999999
Q ss_pred EeCceecCCCeEEEEEcCCCCccccccccccChHHHHHHHHHHHHH
Q 047998 424 EIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLDE 469 (558)
Q Consensus 424 iIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~ll~~ 469 (558)
|||++|+++|+|+||+|+++++. .++++++++.+.+.+++
T Consensus 494 IIG~~E~e~~~VtVR~r~~~eq~------~v~l~eli~~l~~~i~~ 533 (545)
T PRK14799 494 IVGKKEASEGTVTVRARGNIEVR------NVKFEKFLELLITEIAQ 533 (545)
T ss_pred EEChhHhhcCeEEEEECCCCceE------EEcHHHHHHHHHHHHhh
Confidence 99999999999999999999886 78999998777666554
No 10
>PLN02837 threonine-tRNA ligase
Probab=100.00 E-value=6.8e-63 Score=552.03 Aligned_cols=366 Identities=19% Similarity=0.250 Sum_probs=322.6
Q ss_pred ceeecCCCCcchHHHHHHHHHhcccccc------------CC--CCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeec
Q 047998 77 RERVITPRSQDFNAWYLDVISNAELADY------------GP--VRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYF 142 (558)
Q Consensus 77 ~~~~i~~~~~~~~~wy~~~~~~a~l~d~------------~~--vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~t 142 (558)
+++|+++++++.++-|.+.+++++..|| .. .+|++.|+|.|.++++.|++++++...+.||++|.|
T Consensus 192 ri~g~~~~~~~~l~~~~~~~~e~~~rdH~~lg~~l~lf~~~~~~g~G~~~~~p~G~~l~~~L~~~~~~~~~~~G~~~v~t 271 (614)
T PLN02837 192 RIYGTAWESEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQDDAGGGLVFWHPKGAIVRHIIEDSWKKMHFEHGYDLLYT 271 (614)
T ss_pred EEEEEecCCHHHHHHHHHHHHHhhhCCHHHHHHHcCCcccCcCcCCcceEEechHHHHHHHHHHHHHHHHHHCCCEEEEC
Confidence 7899999998888888887777765544 33 479999999999999999999999999999999999
Q ss_pred CccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC--
Q 047998 143 PQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-- 220 (558)
Q Consensus 143 P~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~-- 220 (558)
|.|.+.++| +.+|||+.|.++||.+.+..+ +.++||||+|+.++.+|+++++|||+||+|++||++|||+|.+
T Consensus 272 P~l~~~~l~-~~sGh~~~~~~~mf~~~~~~~----~~y~l~p~~~p~~~~~~~~~~~SyrdLPlr~~~~~~~~R~E~~g~ 346 (614)
T PLN02837 272 PHVAKADLW-KTSGHLDFYKENMYDQMDIED----ELYQLRPMNCPYHILVYKRKLHSYRDLPIRVAELGTVYRYELSGS 346 (614)
T ss_pred CccCCHHHH-hhcCCcccchhhcccccCCCC----ceEEECCCCcHHHHHHHhCccCChhHCCHhhEeecccccCCCCCC
Confidence 999999999 679999999999999977554 4789999999999999999999999999999999999999996
Q ss_pred CCCccccceEEEecceeeeCChHHHHHHHHHHHHHHHHHHHhhCCceE-EeecCCchhhccC------------------
Q 047998 221 TKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPV-IAGRKSKVETFAG------------------ 281 (558)
Q Consensus 221 ~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il~~y~~l~~~~l~ipv-~~g~k~~~ekf~G------------------ 281 (558)
++||+|+|||+|+|+|+| |+++++++|+..++++|.+++.. |++|+ .....++.+++.|
T Consensus 347 ~~GL~RvreF~~~e~h~f-~~~~q~~~e~~~~l~~~~~~~~~-lg~~~~~~~~~t~~~~~~g~~~~w~~~~~~l~~~l~~ 424 (614)
T PLN02837 347 LHGLFRVRGFTQDDAHIF-CLEDQIKDEIRGVLDLTEEILKQ-FGFSKYEINLSTRPEKSVGSDDIWEKATTALRDALDD 424 (614)
T ss_pred CcCcccccceEECeEEEE-eCHHHHHHHHHHHHHHHHHHHHH-cCCCeEEEEecCCchhccCCHHHHHHHHHHHHHHHHH
Confidence 679999999999999996 99999999999999999999865 88884 3333333344443
Q ss_pred ------------CCcceEEEEEEcC--ccceeecceEecCcccccccCeEEeCCCCcee---eEeeeccchHHHHHHHHH
Q 047998 282 ------------ASRTYTIEAMMGD--KRALQAGTSHNLGQNFSLAFGTQFTDENGQRQ---HVWQTSWAISTRFVGGII 344 (558)
Q Consensus 282 ------------a~~~~~ie~~~~d--gr~lq~gti~~Lg~~~s~~f~i~y~d~~g~~~---~v~~~s~Gi~eRli~~li 344 (558)
|.+...+|+.+.| ||.||+||+| ||++++++|+++|.+++|+.. .+|+++||++||+|++|+
T Consensus 425 ~~~~~~~~~g~~afygpkid~~~~d~~gr~~q~~tiq-ldf~~~~~f~l~y~~~d~~~~~pv~ih~~~~G~~eRlia~Li 503 (614)
T PLN02837 425 KGWEYKVDEGGGAFYGPKIDLKIEDALGRKWQCSTIQ-VDFNLPERFDITYVDSNSEKKRPIMIHRAILGSLERFFGVLI 503 (614)
T ss_pred cCCCceeCCCcccccCcceeeEeeccCCceeeeccee-EeecchhhcCcEEECCCCCccCCEEEEcCCccCHHHHHHHHH
Confidence 3344457888888 8999999999 999999999999999999654 689999999999999999
Q ss_pred HHhCCCCCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEEEE
Q 047998 345 MTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIE 424 (558)
Q Consensus 345 e~~~D~~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~~Ii 424 (558)
++|++ .||+|+||.||+|||++++ ..++|.+|++.||++|++|++| .+ .++|+|+++|++.|+|++|+
T Consensus 504 e~~~g----~~P~~laP~qV~IIpi~~~------~~~~A~~Ia~~Lr~~GirVev~-~~-~slgkkir~A~~~gip~~Ii 571 (614)
T PLN02837 504 EHYAG----DFPLWLAPVQARVLPVTDN------ELEYCKEVVAKLKAKGIRAEVC-HG-ERLPKLIRNAETQKIPLMAV 571 (614)
T ss_pred HHcCC----CCCCCCCCccEEEEEeChH------HHHHHHHHHHHHHHCCCEEEEe-CC-CCHHHHHHHHHHcCCCEEEE
Confidence 99864 5999999999999999653 5789999999999999999995 55 49999999999999999999
Q ss_pred eCceecCCCeEEEEEcCCCCccccccccccChHHHHHHHHHHHH
Q 047998 425 IGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLD 468 (558)
Q Consensus 425 IG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~ll~ 468 (558)
||++|+++|+|+|++|+++++. .++++++++.|.+..+
T Consensus 572 IG~~E~e~~~VtVr~r~~geq~------~v~~~el~~~l~~~~~ 609 (614)
T PLN02837 572 VGPKEVETRTLTVRSRHGGELG------TMPVDDFINRIQLAVE 609 (614)
T ss_pred EcchhhhcCEEEEEECCCCcee------EeeHHHHHHHHHHHHh
Confidence 9999999999999999999886 6888888777765544
No 11
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.4e-60 Score=534.00 Aligned_cols=367 Identities=21% Similarity=0.316 Sum_probs=321.6
Q ss_pred ceeecCCCCcchHHHHHHHHHhcccccc-------------CCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecC
Q 047998 77 RERVITPRSQDFNAWYLDVISNAELADY-------------GPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFP 143 (558)
Q Consensus 77 ~~~~i~~~~~~~~~wy~~~~~~a~l~d~-------------~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP 143 (558)
+++|+++++.+..+.|.+.++++...|| ..++|+++|+|.|+.+|+.|++++++.+.++||++|.||
T Consensus 220 Ri~g~a~~~~~~l~~~~~~~~~~~~~dH~~l~~~~~l~~~~~~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~~v~tP 299 (639)
T PRK12444 220 RIYGVAFSSQKELEEYLHFVEEAAKRNHRKLGKELELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTP 299 (639)
T ss_pred EEEEEecCCHHHHHHHHHHHHHhccCCHHHHHHHcCCcccccccCcceEEeeCHHHHHHHHHHHHHHHHHHcCCEEEECC
Confidence 8899999998888888888887764443 247899999999999999999999999999999999999
Q ss_pred ccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC--C
Q 047998 144 QFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR--T 221 (558)
Q Consensus 144 ~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~--~ 221 (558)
+|++.++|.+ +||+++|.++|| +.+.++ +.++||||+|++++.+|++++.||++||+|+||||+|||||++ +
T Consensus 300 ~l~~~~l~~~-sG~~~~~~~emy-~~d~~~----~~~~LrP~~~~~~~~~~~~~~~sy~~LP~r~~~~g~~fR~E~~~~~ 373 (639)
T PRK12444 300 FMMNQELWER-SGHWDHYKDNMY-FSEVDN----KSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGAL 373 (639)
T ss_pred ccCCHHHHhh-cCChhhhhhhcC-eecCCC----cEEEEccCCCHHHHHHHhCcccChhhCCceeEEeccccCCCCCcCC
Confidence 9999999966 699999999999 667665 4899999999999999999999999999999999999999998 4
Q ss_pred CCccccceEEEecceeeeCChHHHHHHHHHHHHHHHHHHHhhCCceEEeecCCchhhccC--------------------
Q 047998 222 KPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAG-------------------- 281 (558)
Q Consensus 222 rGllR~REF~q~d~h~~~~~~~~a~~e~~~il~~y~~l~~~~l~ipv~~g~k~~~ekf~G-------------------- 281 (558)
+||+|+|||+|+|+|+| ++++++++|+..+++++.+++.. |++|+....+++.+++.|
T Consensus 374 ~Gl~R~reF~q~d~~~f-~~~~~~~~e~~~~~~~~~~i~~~-lgl~~~~~~~~r~~~~~G~~e~~~~~~~~l~~~l~~~~ 451 (639)
T PRK12444 374 NGLLRVRTFCQDDAHLF-VTPDQIEDEIKSVMAQIDYVYKT-FGFEYEVELSTRPEDSMGDDELWEQAEASLENVLQSLN 451 (639)
T ss_pred cCcceeeeeEEccEEEE-CCHHHHHHHHHHHHHHHHHHHHH-cCCcEEEEEECCccccCCCHHHHHHHHHHHHHHHHHcC
Confidence 59999999999999988 88899999999999999998865 788876533333333333
Q ss_pred ----------CCcceEEEEEEcC--ccceeecceEecCcccccccCeEEeCCCCcee---eEeeeccchHHHHHHHHHHH
Q 047998 282 ----------ASRTYTIEAMMGD--KRALQAGTSHNLGQNFSLAFGTQFTDENGQRQ---HVWQTSWAISTRFVGGIIMT 346 (558)
Q Consensus 282 ----------a~~~~~ie~~~~d--gr~lq~gti~~Lg~~~s~~f~i~y~d~~g~~~---~v~~~s~Gi~eRli~~lie~ 346 (558)
+.+...+|+.+.| +|.+|+||++ ++++++++|+++|.+.+|.+. .+|++++|.+||+|++|+++
T Consensus 452 ~~y~~~~~~ga~Y~~~~e~~~~~~~~~~~~~~t~~-~d~~~~~~f~l~~~~~~g~~~~P~i~~~~~~g~ieRli~~L~e~ 530 (639)
T PRK12444 452 YKYRLNEGDGAFYGPKIDFHIKDALNRSHQCGTIQ-LDFQMPEKFDLNYIDEKNEKRRPVVIHRAVLGSLDRFLAILIEH 530 (639)
T ss_pred CCceeccCCcccccceEEEEeecCCCChhccccee-eecccccccceEEECCCCCccccEEEEECCCCCHHHHHHHHHHh
Confidence 3333456777777 8999999998 999999999999999988654 47888999999999999997
Q ss_pred hCCCCCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEEEEeC
Q 047998 347 HGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIG 426 (558)
Q Consensus 347 ~~D~~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~~IiIG 426 (558)
+ |+.||+|++|.||+|+|++++ ...++|.+|++.||++|++|++|+++ .++|+|+++|++.|+|++|+||
T Consensus 531 ~----~~~~p~~~ap~qV~Ii~~~~~-----~~~~~a~~la~~LR~~Gi~veid~~~-~sl~kq~k~A~k~g~~~~iiiG 600 (639)
T PRK12444 531 F----GGAFPAWLAPVQVKVIPVSNA-----VHVQYADEVADKLAQAGIRVERDERD-EKLGYKIREAQMQKIPYVLVIG 600 (639)
T ss_pred c----CCCCCCccCCceEEEEEcccH-----HHHHHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHcCCCEEEEEc
Confidence 6 569999999999999999751 15789999999999999999999998 5999999999999999999999
Q ss_pred ceecCCCeEEEEEcCCCCccccccccccChHHHHHHHHHHHH
Q 047998 427 PRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLD 468 (558)
Q Consensus 427 ~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~ll~ 468 (558)
++|+++|+|+||+|++++|. .++++++.+.+++.++
T Consensus 601 ~~E~~~~~v~vr~~~t~~q~------~i~l~el~~~l~~~~~ 636 (639)
T PRK12444 601 DKEMENGAVNVRKYGEEKSE------VIELDMFVESIKEEIK 636 (639)
T ss_pred chhhhcCeEEEEECCCCcee------eeeHHHHHHHHHHHhh
Confidence 99999999999999999887 7888998877766554
No 12
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.7e-58 Score=512.48 Aligned_cols=367 Identities=23% Similarity=0.350 Sum_probs=312.6
Q ss_pred ceeecCCCCcchHHHHHHHHH------------hccccccCC--CCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeec
Q 047998 77 RERVITPRSQDFNAWYLDVIS------------NAELADYGP--VRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYF 142 (558)
Q Consensus 77 ~~~~i~~~~~~~~~wy~~~~~------------~a~l~d~~~--vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~t 142 (558)
+++|+.+++.+..+.|.+.++ +.+|++..+ .+|+++|+|.|+.+|+.|++++++.++++||++|.|
T Consensus 151 Ri~g~~~~~~~~l~~~~~~~~e~~~~dh~~l~~~~~l~~~~~~~~~G~~~~~p~~~~~~~~l~~~~~~~~~~~Gy~ev~t 230 (575)
T PRK12305 151 RIYGTAWETKEELKEYLKRLEEAKKRDHRKLGKELDLFSFPDEIGPGLPVWHPKGAIIRREIEDYLRKEHLKRGYEFVYT 230 (575)
T ss_pred EEEEEecCCHHHHHHHHHHHHHhhhccHHHHHHhcCccccccccCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEEC
Confidence 889999988666665555554 445555443 789999999999999999999999999999999999
Q ss_pred CccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCC-
Q 047998 143 PQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRT- 221 (558)
Q Consensus 143 P~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~- 221 (558)
|+|++.++|.+ +||++.|.++||.|+|.+| +.++||||+|++++++|+++..||++||+|++|+|+|||+|.++
T Consensus 231 P~le~~~l~~~-sg~~~~~~~~my~~~d~~~----~~~~LRP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~ 305 (575)
T PRK12305 231 PHIGKSDLWKT-SGHLDNYKENMFPPMEIDE----EEYYLKPMNCPGHILIYKSRLRSYRDLPLRLAEFGTVYRYEKSGV 305 (575)
T ss_pred CccCCHHHHhh-cCCcccchhhcccccccCC----ceEEEecCCCHHHHHHHhcccCChhhCCHhhEEecccccCCCCCC
Confidence 99999999966 8999999999999998877 48999999999999999999999999999999999999999994
Q ss_pred -CCccccceEEEecceeeeCChHHHHHHHHHHHHHHHHHHHhhCCce---EEeecCCchhhccCCCc-------------
Q 047998 222 -KPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIP---VIAGRKSKVETFAGASR------------- 284 (558)
Q Consensus 222 -rGllR~REF~q~d~h~~~~~~~~a~~e~~~il~~y~~l~~~~l~ip---v~~g~k~~~ekf~Ga~~------------- 284 (558)
+|++|+|||+|.|+|+| ++++++.+|+..+++++.+++.. |+++ +..+..+. ++|.|+..
T Consensus 306 ~~Gl~R~reF~q~~~~if-~~~~~~~~e~~e~i~l~~~~~~~-lgl~~~~i~l~~r~~-~~~~g~~~~~~~~~~~l~~~l 382 (575)
T PRK12305 306 LHGLTRVRGFTQDDAHIF-CTPDQIEDEILKVLDFVLELLKD-FGFKDYYLELSTREP-EKYVGDDEVWEKATEALREAL 382 (575)
T ss_pred CcCcccccCeEEcceEEE-eCHHHHHHHHHHHHHHHHHHHHH-cCCCeEEEEEeCCCh-hhccCCHHHHHHHHHHHHHHH
Confidence 69999999999999998 57777777777788777777665 5666 23333221 33333222
Q ss_pred -----------------ceEEEEEEcC--ccceeecceEecCcccccccCeEEeCCCCcee---eEeeeccchHHHHHHH
Q 047998 285 -----------------TYTIEAMMGD--KRALQAGTSHNLGQNFSLAFGTQFTDENGQRQ---HVWQTSWAISTRFVGG 342 (558)
Q Consensus 285 -----------------~~~ie~~~~d--gr~lq~gti~~Lg~~~s~~f~i~y~d~~g~~~---~v~~~s~Gi~eRli~~ 342 (558)
.-.+|..+.| ||.+|++|++ ++++++.+|+++|.+.+|... .+|++++|.+||++++
T Consensus 383 ~~~g~~~~~~~~~~~~y~~~~~~~~~d~~g~~~~~~t~~-~~~~~~~~fdl~y~~~~~~~~~p~~ih~~~~G~~eRl~~~ 461 (575)
T PRK12305 383 EELGLEYVEDPGGAAFYGPKIDVQIKDALGREWQMSTIQ-LDFNLPERFDLEYTAEDGKRQRPVMIHRALFGSIERFIGI 461 (575)
T ss_pred HhcCCCcEecCCCcccccccEEEEeeccCCCceecccee-eecccHhhCCCEEECCCCCccCceEEEccccccHHHHHHH
Confidence 2224555555 8999999998 988999999999999887643 5678999989999999
Q ss_pred HHHHhCCCCCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEE
Q 047998 343 IIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLR 422 (558)
Q Consensus 343 lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~~ 422 (558)
|+++++ ..||+|++|.||+|+|++++ ..++|.+|++.||++||+|++|+++ .++|+||++|++.|+||+
T Consensus 462 l~e~~~----~~~p~~~~p~~v~Ii~~~~~------~~~~a~~i~~~Lr~~gi~v~~d~~~-~~l~kk~~~A~~~g~p~~ 530 (575)
T PRK12305 462 LTEHYA----GAFPFWLAPVQVVIIPVADA------HNEYAEEVAKKLRAAGIRVEVDTSN-ERLNKKIRNAQKQKIPYM 530 (575)
T ss_pred HHHHhC----CCCCCCCCCccEEEEEeChH------HHHHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHhcCCCEE
Confidence 999863 38999999999999999753 6789999999999999999999997 599999999999999999
Q ss_pred EEeCceecCCCeEEEEEcCCCCccccccccccChHHHHHHHHHHHHH
Q 047998 423 IEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLDE 469 (558)
Q Consensus 423 IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~ll~~ 469 (558)
|+||++|+++|+|+||+|+++++. .++++++++.|++++++
T Consensus 531 iivG~~E~~~~~v~vr~~~~~~q~------~v~~~~l~~~l~~~~~~ 571 (575)
T PRK12305 531 LVVGDKEVEAGTVSVRTRDGEQLN------GMPLDEFIELIKEKIAE 571 (575)
T ss_pred EEEechhhhCCEEEEEEcCCCcee------eeeHHHHHHHHHHHHhc
Confidence 999999999999999999999886 78899998888777664
No 13
>PLN02908 threonyl-tRNA synthetase
Probab=100.00 E-value=6.6e-58 Score=518.09 Aligned_cols=367 Identities=19% Similarity=0.271 Sum_probs=323.0
Q ss_pred ceeecCCCCcchHHHHHHHHHhcccccc-------------CCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecC
Q 047998 77 RERVITPRSQDFNAWYLDVISNAELADY-------------GPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFP 143 (558)
Q Consensus 77 ~~~~i~~~~~~~~~wy~~~~~~a~l~d~-------------~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP 143 (558)
+++||++++....+.|.+.++++...|| ...+|+++|+|.|++++++|++++++.+.++||++|.||
T Consensus 267 Ri~G~sfp~~~~l~~~~~~~~e~~~rdH~~lg~~~~lf~~~~~~~G~~~~lP~g~~i~~~l~~~~~~~~~~~G~~ev~tP 346 (686)
T PLN02908 267 RVYGISFPDKKLLKEYKHRIEEAKKRDHRLLGQKQELFFFHELSPGSCFFLPHGARIYNKLMDFIREQYWERGYDEVITP 346 (686)
T ss_pred EEeeeccCChHHHHHHHhhhhhccccCHHHHHHhcCCeeecCCCCcceEEechHHHHHHHHHHHHHHHHHHcCCEEEECC
Confidence 7899999998888889998888876654 236899999999999999999999999999999999999
Q ss_pred ccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC--C
Q 047998 144 QFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR--T 221 (558)
Q Consensus 144 ~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~--~ 221 (558)
.|++.++|. .|||+++|.++||+|+. ++ ++++||||+|++++.+|+++.+|||+||+|++|+|+|||+|.+ +
T Consensus 347 ~l~~~~l~~-~sGh~~~~~~~mf~~~~-~~----~~~~Lrp~~~~~~~~~~~~~~~s~r~LPlr~~~~g~~fR~E~~~~l 420 (686)
T PLN02908 347 NIYNMDLWE-TSGHAAHYKENMFVFEI-EK----QEFGLKPMNCPGHCLMFAHRVRSYRELPLRLADFGVLHRNELSGAL 420 (686)
T ss_pred ccccHHHHh-hcCCccccchhccEEec-CC----eeEEEcCCCcHHHHHHHhccccChhhCCHhHEEeeccccCCCCcCC
Confidence 999999995 59999999999999954 43 4899999999999999999999999999999999999999999 4
Q ss_pred CCccccceEEEecceeeeCChHHHHHHHHHHHHHHHHHHHhhCCceEEeecCCchhhccCCCcce---------------
Q 047998 222 KPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTY--------------- 286 (558)
Q Consensus 222 rGllR~REF~q~d~h~~~~~~~~a~~e~~~il~~y~~l~~~~l~ipv~~g~k~~~ekf~Ga~~~~--------------- 286 (558)
+||+|+|||+|+|+|+| |+++++++|+..+++++..++.. +++++....+++.++|.|....|
T Consensus 421 ~Gl~RvReF~q~d~~if-~~~~q~~~e~~~~l~~~~~v~~~-lG~~~~~~ls~r~~~~~g~~~~w~~ae~~l~~~ld~~~ 498 (686)
T PLN02908 421 TGLTRVRRFQQDDAHIF-CREDQIKDEVKGVLDFLDYVYEV-FGFTYELKLSTRPEKYLGDLETWDKAEAALTEALNAFG 498 (686)
T ss_pred cCccccccEEEeeEEEE-cCHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEEeCCccccCCCHHHHHHHHHHHHHHHHHcC
Confidence 69999999999999997 99999999999999999998865 78888766666666666543322
Q ss_pred ---------------EEEEEEcC--ccceeecceEecCcccccccCeEEeCCCCc----eeeEeeeccchHHHHHHHHHH
Q 047998 287 ---------------TIEAMMGD--KRALQAGTSHNLGQNFSLAFGTQFTDENGQ----RQHVWQTSWAISTRFVGGIIM 345 (558)
Q Consensus 287 ---------------~ie~~~~d--gr~lq~gti~~Lg~~~s~~f~i~y~d~~g~----~~~v~~~s~Gi~eRli~~lie 345 (558)
.++..+.| +|.+|++|++ ++.+++.+|++.|.++++. ...+|++.+|.+||++++|++
T Consensus 499 ~~~~~~~g~~afygpkid~~~~d~l~r~~~~~t~q-~df~lp~~f~L~Y~~e~~~~~~~pv~ihrai~GsiERli~iL~e 577 (686)
T PLN02908 499 KPWQLNEGDGAFYGPKIDITVSDALKRKFQCATVQ-LDFQLPIRFKLSYSAEDEAKIERPVMIHRAILGSVERMFAILLE 577 (686)
T ss_pred CCcEECCCceeecccceEEEEEeccCCEeecccee-ecccCHhhcCCEEECCCCCcCCCCEEEEeCceEhHHHHHHHHHH
Confidence 23444445 6889999998 8888889999999987764 245889999999999999988
Q ss_pred HhCCCCCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEEEEe
Q 047998 346 THGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEI 425 (558)
Q Consensus 346 ~~~D~~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~~IiI 425 (558)
+. |..||+|++|.||+|+|++++ ..++|.+|++.||++|++|++|.++ .++|+|+++|++.|+|++|+|
T Consensus 578 ~~----~g~~p~wlsp~qv~Vipv~~~------~~~~A~~va~~LR~~Gi~vevd~~~-~~l~kkir~A~~~g~~~viiv 646 (686)
T PLN02908 578 HY----AGKWPFWLSPRQAIVVPISEK------SQDYAEEVRAQLHAAGFYVDVDVTD-RKIQKKVREAQLAQYNYILVV 646 (686)
T ss_pred Hc----CCCCCCCCCCceEEEEEECHH------HHHHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHcCCCEEEEE
Confidence 65 458999999999999999753 6789999999999999999999987 599999999999999999999
Q ss_pred CceecCCCeEEEEEcCCCCccccccccccChHHHHHHHHHHHHH
Q 047998 426 GPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLDE 469 (558)
Q Consensus 426 G~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~ll~~ 469 (558)
|++|+++|+|+||+|+++++. .++++++++.++++.++
T Consensus 647 G~~E~~~~~V~vr~~~~~~q~------~i~l~el~~~l~~~~~~ 684 (686)
T PLN02908 647 GEAEAATGTVNVRTRDNVVHG------EKKIEELLTEFKEERAE 684 (686)
T ss_pred CchHHhCCEEEEEECCCCcee------eeeHHHHHHHHHHHHhh
Confidence 999999999999999998876 78899998888776553
No 14
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=100.00 E-value=1.2e-57 Score=508.18 Aligned_cols=363 Identities=20% Similarity=0.243 Sum_probs=309.1
Q ss_pred ceeecCCCCcchHH------------HHHHHHHhccccccCC--CCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeec
Q 047998 77 RERVITPRSQDFNA------------WYLDVISNAELADYGP--VRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYF 142 (558)
Q Consensus 77 ~~~~i~~~~~~~~~------------wy~~~~~~a~l~d~~~--vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~t 142 (558)
+++|+++++.+.++ .|.+++++.+|+|+.+ ++|+++|+|.|+.+|+.|++++++.+.++||++|.|
T Consensus 145 Ri~g~~~~~~~~l~~~~~~~~~~~~~dH~~l~~~~~l~~~~~~~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~ev~t 224 (563)
T TIGR00418 145 RIYGTAWADKKQLAAYLLRLEEAKKRDHRKLGKELELFSFEPEIGPGLPFWLPKGATIRNLLEDFVRQKQIKYGYMEVET 224 (563)
T ss_pred eeeeccCCCHHHHHHHHHhhhhhhcCCHHHHHHhCCCcccCcccCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEEC
Confidence 77888887655433 3566677778888875 799999999999999999999999999999999999
Q ss_pred CccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC--
Q 047998 143 PQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-- 220 (558)
Q Consensus 143 P~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~-- 220 (558)
|+|++.++|.+ +||++.|.+|||+|+|++|+ .++||||+|++++++|+++..||++||+|+||+|+|||||.+
T Consensus 225 P~l~~~~l~~~-sg~~~~~~~emy~~~d~~~~----~~~LrP~~~~~i~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~g~ 299 (563)
T TIGR00418 225 PIMYDLELWEI-SGHWDNYKERMFPFTELDNR----EFMLKPMNCPGHFLIFKSSLRSYRDLPLRIAELGYSHRYEQSGE 299 (563)
T ss_pred CccCCHHHHHh-cCCcccchhhcceeccCCCc----eEEEecCCCHHHHHHHhCcCCChHHCCceeeEeccccCCCCCcC
Confidence 99999999955 79999999999999998874 899999999999999999999999999999999999999988
Q ss_pred CCCccccceEEEecceeeeCChHHHHHHHHHHHHHHHHHHHhhCCceE---Ee--ecCC-------chhh----------
Q 047998 221 TKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPV---IA--GRKS-------KVET---------- 278 (558)
Q Consensus 221 ~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il~~y~~l~~~~l~ipv---~~--g~k~-------~~ek---------- 278 (558)
++||+|+|||+|.|+|+|+. ++++++|+..+++++.+++.. |++|. .. ++.. .+.+
T Consensus 300 ~~Gl~R~reF~q~~~~~~~~-~~~~~~e~~~~i~~~~~~~~~-lgl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 377 (563)
T TIGR00418 300 LHGLMRVRGFTQDDAHIFCT-EDQIKEEFKNQFRLIQKVYSD-FGFSFDKYELSTRDPEDFIGEDELWEKAEAALEEALK 377 (563)
T ss_pred CcCcccccceEEeeeEEEcC-HHHHHHHHHHHHHHHHHHHHH-cCCCeEEEEEeCCChhhhcCCHHHHHHHHHHHHHHHH
Confidence 46999999999999999966 899999988888888888765 67762 22 2110 0111
Q ss_pred ----------ccCCCcceEEEEEEcC--ccceeecceEecCcccccccCeEEeCCCCceeeEee--eccch-HHHHHHHH
Q 047998 279 ----------FAGASRTYTIEAMMGD--KRALQAGTSHNLGQNFSLAFGTQFTDENGQRQHVWQ--TSWAI-STRFVGGI 343 (558)
Q Consensus 279 ----------f~Ga~~~~~ie~~~~d--gr~lq~gti~~Lg~~~s~~f~i~y~d~~g~~~~v~~--~s~Gi-~eRli~~l 343 (558)
.-|+++...+++.+.| |+.+|+||+| ++.+++.+|++.|.+.+|....+++ .+|++ +||++++|
T Consensus 378 ~~~i~~~~~~~~g~~y~~~~~f~~~~~lg~~~~~~t~q-~~~~~g~ryd~~~~~~~g~~~~p~ii~~Gfa~gieRli~~l 456 (563)
T TIGR00418 378 ELGVPYEIDPGRGAFYGPKIDFAFKDALGREWQCATVQ-LDFELPERFDLTYVDEDNEEKRPVMIHRAILGSIERFIAIL 456 (563)
T ss_pred hCCCceEEcCCCcceecceEEEEeecCCCCceeeceee-eccCCHhhcCCEEECCCCCEEeeEEEEeeccCcHHHHHHHH
Confidence 1234444445666677 8999999998 8889999999999999887665544 33333 89999999
Q ss_pred HHHhCCCCCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEEE
Q 047998 344 IMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRI 423 (558)
Q Consensus 344 ie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~~I 423 (558)
++++ |..||+|++|.||+|+|++++ ..++|.+|++.||++|++|++|+++ .++|+||++|++.|+|++|
T Consensus 457 ~e~~----~~~~p~~~~p~~v~vi~~~~~------~~~~a~~ia~~LR~~Gi~v~~d~~~-~sl~~q~k~A~~~g~~~~i 525 (563)
T TIGR00418 457 LEKY----AGNFPLWLAPVQVVVIPVNER------HLDYAKKVAQKLKKAGIRVDVDDRN-ERLGKKIREAQKQKIPYML 525 (563)
T ss_pred HHhc----cCCCCCcCCCceEEEEEccch------HHHHHHHHHHHHHHcCCEEEEECCC-CCHHHHHHHHHhcCCCEEE
Confidence 8876 457999999999999999753 5789999999999999999999997 5999999999999999999
Q ss_pred EeCceecCCCeEEEEEcCCCCccccccccccChHHHHHHHH
Q 047998 424 EIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVK 464 (558)
Q Consensus 424 iIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~ 464 (558)
+||++|+++|+|+||+|++++|. .++++++++.++
T Consensus 526 iiG~~E~~~~~v~vk~~~~g~q~------~v~~~el~~~i~ 560 (563)
T TIGR00418 526 VVGDKEMESLAVNVRTRKGQKLE------KMSLDEFLEKLR 560 (563)
T ss_pred EEchhhhhCCeEEEEECCCCccc------eeeHHHHHHHHH
Confidence 99999999999999999999887 788898877664
No 15
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.1e-54 Score=488.80 Aligned_cols=369 Identities=23% Similarity=0.372 Sum_probs=306.6
Q ss_pred CCCceeecCCCCcchHHHHHHHHHhccccc------------c-CCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeee
Q 047998 74 RGNRERVITPRSQDFNAWYLDVISNAELAD------------Y-GPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNM 140 (558)
Q Consensus 74 ~~~~~~~i~~~~~~~~~wy~~~~~~a~l~d------------~-~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei 140 (558)
...+++|+.+++.+-.+.|.+.++++...| + ..++|+++|+|.|+.+|+.|++++++.+.++||++|
T Consensus 213 ~l~Ri~g~~~~~~~~l~~~~~~~~e~~~~~h~~l~~~~~~~~~~~~~~G~~~~lp~~~~~~~~i~~~~~~~~~~~Gy~ei 292 (638)
T PRK00413 213 MLQRIYGTAFADKKELDAYLHRLEEAKKRDHRKLGKELDLFHFQEEAPGLPFWHPKGWTIRRELERYIRRKLRKAGYQEV 292 (638)
T ss_pred heEEEEeeecCCHHHHHHHHHHHHHhccccHHHHHHhcCEEEecCCCCcceEEcccHHHHHHHHHHHHHHHHHHCCCEEE
Confidence 334899999998777777888887776443 3 246999999999999999999999999999999999
Q ss_pred ecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC
Q 047998 141 YFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR 220 (558)
Q Consensus 141 ~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~ 220 (558)
.||+|++.++|.+ +||++.|.++||.|.|.+|+ .++||||+|++++++|+++.+||++||+|+||+|+|||+|++
T Consensus 293 ~tP~le~~~l~~~-~g~~~~~~~~my~~~d~~~~----~~~LRP~~~~~~~r~~~~~~~s~~~lP~r~~~~g~~fR~E~~ 367 (638)
T PRK00413 293 KTPQILDRELWET-SGHWDHYRENMFPTTESDGE----EYALKPMNCPGHVQIYKQGLRSYRDLPLRLAEFGTVHRYEPS 367 (638)
T ss_pred ECCeeCCHHHHHh-cCChhhhhhccceeecCCCc----EEEEecCCcHHHHHHHhCcCCChhhCCceeeeccCeecCCCC
Confidence 9999999999966 79999999999999998874 899999999999999999999999999999999999999999
Q ss_pred C--CCccccceEEEecceeeeCChHHHHHHHHHHHHHHHHHHHhhCCce-E--EeecCCchhhccCCC------------
Q 047998 221 T--KPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIP-V--IAGRKSKVETFAGAS------------ 283 (558)
Q Consensus 221 ~--rGllR~REF~q~d~h~~~~~~~~a~~e~~~il~~y~~l~~~~l~ip-v--~~g~k~~~ekf~Ga~------------ 283 (558)
+ +|+.|+|||+|+|+|+| ++++++.+|+.+++.++.+++.. ++++ + ..+.. .+++.|.+
T Consensus 368 ~~~~Gl~R~reF~q~~~~~~-g~~~~~~~e~~eii~l~~~~~~~-lg~~~~~i~l~~r--~~~~~g~~~~~~~~~~~l~~ 443 (638)
T PRK00413 368 GALHGLMRVRGFTQDDAHIF-CTPEQIEEEVKKVIDLILDVYKD-FGFEDYEVKLSTR--PEKRIGSDEMWDKAEAALKE 443 (638)
T ss_pred CCCcCcceeeeeEEeeEEEE-cCHHHHHHHHHHHHHHHHHHHHH-cCCceEEEEEecC--CcccCCCHHHHHHHHHHHHH
Confidence 6 59999999999999998 56666655555566655555544 4552 2 22221 11111111
Q ss_pred ------------------cceEEEEEEcC--ccceeecceEecCcccccccCeEEeCCCCcee---eEeeeccchHHHHH
Q 047998 284 ------------------RTYTIEAMMGD--KRALQAGTSHNLGQNFSLAFGTQFTDENGQRQ---HVWQTSWAISTRFV 340 (558)
Q Consensus 284 ------------------~~~~ie~~~~d--gr~lq~gti~~Lg~~~s~~f~i~y~d~~g~~~---~v~~~s~Gi~eRli 340 (558)
+.-.++..+.| |+.++++|++ ++.+++.+||+.|++.+|... .+|++.+|.+||+|
T Consensus 444 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~~~~~~dl~Yt~~~~~~~~p~~i~~~~~g~~eRli 522 (638)
T PRK00413 444 ALDELGLDYEIAPGEGAFYGPKIDFQLKDALGREWQCGTIQ-LDFNLPERFDLTYVGEDGEKHRPVMIHRAILGSMERFI 522 (638)
T ss_pred HHHHcCCCceecCCccccccceEEEEeecCCCCeEEeccEe-ecccChhhcCCEEECCCCCccCcEEEEecceehHHHHH
Confidence 11234544444 6778889987 888888999999999877542 45678788799999
Q ss_pred HHHHHHhCCCCCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCC
Q 047998 341 GGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIP 420 (558)
Q Consensus 341 ~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP 420 (558)
++|+++++ | .||+|++|.||+|+|++.+ ..++|.+|++.||++|++|++|+++ .++|+|+++|++.|+|
T Consensus 523 ~~l~e~~~---~-~~p~~~~p~~v~Ii~~~~~------~~~~a~~i~~~Lr~~gi~v~~d~~~-~~l~kki~~A~~~g~~ 591 (638)
T PRK00413 523 GILIEHYA---G-AFPTWLAPVQVVVLPITDK------HADYAKEVAKKLKAAGIRVEVDLRN-EKIGYKIREAQLQKVP 591 (638)
T ss_pred HHHHHHcC---C-CCCcccCcceEEEEEeChh------HHHHHHHHHHHHHhCCCEEEEECCC-CCHhHHHHHhhccCCC
Confidence 99998763 3 7999999999999999753 6789999999999999999999998 5999999999999999
Q ss_pred EEEEeCceecCCCeEEEEEcCCCCccccccccccChHHHHHHHHHHHHH
Q 047998 421 LRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLDE 469 (558)
Q Consensus 421 ~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~ll~~ 469 (558)
++|+||++|+++|+|+||+|++++|. .++++++++.|++++++
T Consensus 592 ~~iiiG~~E~~~~~v~vr~~~~~~q~------~i~~~~l~~~i~~~~~~ 634 (638)
T PRK00413 592 YMLVVGDKEVEAGTVSVRRRGGKDLG------TMSLDEFIERLLEEIAS 634 (638)
T ss_pred EEEEEcchhhhcCeEEEEECCCCccc------eeeHHHHHHHHHHHHhh
Confidence 99999999999999999999999887 78899998888887765
No 16
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=100.00 E-value=2.8e-55 Score=443.94 Aligned_cols=259 Identities=64% Similarity=1.088 Sum_probs=248.6
Q ss_pred chHHHHHHHHHhccccccCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceE
Q 047998 87 DFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELA 166 (558)
Q Consensus 87 ~~~~wy~~~~~~a~l~d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy 166 (558)
||++||.+++++++++|+++++|+++|+|.|++++++|++++++.+.++||++|.||.|++.++|.+++||+++|.++||
T Consensus 1 ~~~~w~~~l~~~~~~~d~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f 80 (261)
T cd00778 1 DFSEWYTEVITKAELIDYGPVKGCMVFRPYGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVA 80 (261)
T ss_pred CHHHHHHHHHHHhCCcccCCCCCeEEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceE
Confidence 79999999999999999999999999999999999999999999999999999999999999999777999999999999
Q ss_pred EEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCC-CCccccceEEEecceeeeCChHHH
Q 047998 167 LVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRT-KPFVRTLEFLWQEGHTAHATPEEA 245 (558)
Q Consensus 167 ~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~-rGllR~REF~q~d~h~~~~~~~~a 245 (558)
++++.+++.++++++||||+|++++.++++++.||++||+|+||+++|||+|.++ +||+|+|||+|.|+|+++++++++
T Consensus 81 ~~~~~~~~~~~~~~~L~Pt~e~~~~~~~~~~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~ 160 (261)
T cd00778 81 WVTHGGLEELEEPLALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEA 160 (261)
T ss_pred EEEecCCcccCCcEEEcCCCCHHHHHHHHhhccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHH
Confidence 9999887655678999999999999999999999999999999999999999995 699999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCceEEeecCCchhhccCCCcceEEEEEEcCccceeecceEecCcccccccCeEEeCCCCce
Q 047998 246 EKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGDKRALQAGTSHNLGQNFSLAFGTQFTDENGQR 325 (558)
Q Consensus 246 ~~e~~~il~~y~~l~~~~l~ipv~~g~k~~~ekf~Ga~~~~~ie~~~~dgr~lq~gti~~Lg~~~s~~f~i~y~d~~g~~ 325 (558)
++|+..++++|.+++.++|++|+..+.++.++++.|+.++|.+|++|++||.+|+||++++|+++|++|+++|.+++|+.
T Consensus 161 ~~~~~~~~~~~~~i~~~llgl~~~~~~~~~~d~~~~a~~~~~ie~~~p~~~~~ev~s~~~l~~~~s~r~~i~y~~~~g~~ 240 (261)
T cd00778 161 EEEVLQILDLYKEFYEDLLAIPVVKGRKTEWEKFAGADYTYTIEAMMPDGRALQSGTSHNLGQNFSKAFDIKYQDKDGQK 240 (261)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEecCCccccCCCCccceEEEEEeeCCCEEEEEeccccccccchhcCCEEECCCCCC
Confidence 99999999999999988559999999888899999999999999999999999999999999999999999999999988
Q ss_pred eeEeeeccchHHHHHHHHHH
Q 047998 326 QHVWQTSWAISTRFVGGIIM 345 (558)
Q Consensus 326 ~~v~~~s~Gi~eRli~~lie 345 (558)
+++|++++|+++|+|++|++
T Consensus 241 ~~~h~~~~g~~~R~i~ali~ 260 (261)
T cd00778 241 EYVHQTSWGISTRLIGAIIM 260 (261)
T ss_pred cCcEEecccHHHHHHHHHHh
Confidence 89999999999999999986
No 17
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=100.00 E-value=3.5e-54 Score=436.22 Aligned_cols=259 Identities=39% Similarity=0.621 Sum_probs=243.1
Q ss_pred chHHHHHHHHHhccccccCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccc-cCCce
Q 047998 87 DFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEG-FSPEL 165 (558)
Q Consensus 87 ~~~~wy~~~~~~a~l~d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~-f~~Em 165 (558)
||..||++++.+|||+++.+++|+++|+|.|+++|++|+++++++++++||++|.||+|++.++| +++|++.. |.+||
T Consensus 1 ~~~~~~~~~l~~ag~~~~~~~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~-~~~g~~~~~~~~e~ 79 (264)
T cd00772 1 DASEKSLEHIGKAELADQGPGRGIINFLPLAKAILDKIENVLDKMFKEHGAQNALFPFFILASFL-EKEAEHDEGFSKEL 79 (264)
T ss_pred ChhHHHHHHHHhcCCccccCCCCEEEECCcHHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHH-hhcCCcccccCccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999 55777665 66999
Q ss_pred EEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC-CCCccccceEEEecceeeeCChHH
Q 047998 166 ALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEFLWQEGHTAHATPEE 244 (558)
Q Consensus 166 y~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~-~rGllR~REF~q~d~h~~~~~~~~ 244 (558)
|++++.++++++++++||||+|++++.++++++.||++||+|+|||++|||+|.+ ++||+|+|||+|+|+|+||+++++
T Consensus 80 ~~~~~~~~~~~~~~l~LrPt~e~~~~~~~~~~i~s~~~LPlrl~~~~~~fR~E~r~~~Gl~R~reF~~~e~~~~~~~~e~ 159 (264)
T cd00772 80 AVFKDAGDEELEEDFALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADAEE 159 (264)
T ss_pred eEEEeCCCCccCceEEECCCCCHHHHHHHHhhhhhhhccCeeEEEEeCeEeCcCCCCCCcceeeEEEEeeeEEecCCHHH
Confidence 9999988766667999999999999999999999999999999999999999955 689999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCceEEeecCCchhhccCCCcceEEEEEEcCccceeecceEecCcccccccC--eEEeCCC
Q 047998 245 AEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGDKRALQAGTSHNLGQNFSLAFG--TQFTDEN 322 (558)
Q Consensus 245 a~~e~~~il~~y~~l~~~~l~ipv~~g~k~~~ekf~Ga~~~~~ie~~~~dgr~lq~gti~~Lg~~~s~~f~--i~y~d~~ 322 (558)
+++|+..++++|.+++.++.++|++.+.++..++|.|+..+|++|++|++|+..|++++|++|++++++++ ++|.|++
T Consensus 160 a~~e~~~~~~~~~~i~~~l~~lp~~~~~~~~~d~~~g~~~~~d~e~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 239 (264)
T cd00772 160 ADEEFLNMLSAYAEIARDLAAIDFIEGEADEGAKFAGASKSREFEALMEDGKAKQAETGHIFGEGFARAFDLKAKFLDKD 239 (264)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccEEEEEcCCCccccCCcCCEEEEEECCCCCEeEEEeeeeccCCchhhcCCccEEECCC
Confidence 99999999999999998843499999999999999999999999999999999999999999999999776 9999999
Q ss_pred CceeeEeeeccch-HHHHHHHHHHH
Q 047998 323 GQRQHVWQTSWAI-STRFVGGIIMT 346 (558)
Q Consensus 323 g~~~~v~~~s~Gi-~eRli~~lie~ 346 (558)
|+.+++|++|||+ ++|+|++++|+
T Consensus 240 ~~~~~~~~n~~gi~~~R~l~aile~ 264 (264)
T cd00772 240 GKEKFFEMGCWGIGISRFIGAIIEQ 264 (264)
T ss_pred CCEEEEEeccccchHHHHHHHhhcC
Confidence 9999999999999 66999999874
No 18
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.8e-53 Score=460.42 Aligned_cols=357 Identities=20% Similarity=0.251 Sum_probs=292.5
Q ss_pred HHHHHHhccccc-----cCCCCcceEeCchhHHHHHHHHHHHHHHHHH--cCCeeeecCccccHhhHhhhhcCccccCCc
Q 047998 92 YLDVISNAELAD-----YGPVRGTMVIRPYGYAIWEAIQDYLNVKFKE--TGHSNMYFPQFIPYSFIEKEASHVEGFSPE 164 (558)
Q Consensus 92 y~~~~~~a~l~d-----~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~--~G~~ei~tP~l~~~~l~~k~sgh~~~f~~E 164 (558)
..+++.+-|++= |+.++|+|||+|.|+.|+++|+++|++.+.+ .||.+|.||++.+.+|| +.||||+.|.+.
T Consensus 7 ~~~~~~~~~~~~~s~~iy~~~~g~~d~~P~G~~l~~~i~~~~r~~~~~~~~~~~ev~tp~i~~~~l~-~~SGH~~~f~d~ 85 (456)
T PRK04173 7 IVSLAKRRGFVFPSSEIYGGLAGFWDYGPLGVELKNNIKRAWWKSFVQEREDVVGIDSPIIMPPEVW-EASGHVDNFSDP 85 (456)
T ss_pred HHHHHHhcCCeeeccccccchhcccccChhhHHHHHHHHHHHHHHHHhccCCEEEEeccccCCHHHH-hhcCCccccCCc
Confidence 455666666652 4568999999999999999999999999987 89999999999999999 779999999999
Q ss_pred eEEEEecC---------------------------------------Cc--------------------cccccccccCC
Q 047998 165 LALVTIGG---------------------------------------GK--------------------ELEEKLVVRPT 185 (558)
Q Consensus 165 my~~~~~g---------------------------------------~~--------------------~l~e~l~LRPt 185 (558)
||.+...+ +. +-++.++|||+
T Consensus 86 m~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~m~cp~~~~~~~~~~~~f~l~f~~~~g~~~~~~~~~~lRpe 165 (456)
T PRK04173 86 LVECKKCKKRYRADHLIEELGIDAEGLSNEELKELIRENDIKCPECGGENWTEVRQFNLMFKTFIGPVEDSKSLGYLRPE 165 (456)
T ss_pred eeEeCCCCCEeechhhhHHHhhhhccccHHHHHHHHHHhCCCCCCCCCCCCcCccchhhceeecccCccCCCcceeeccc
Confidence 99885211 11 00235789999
Q ss_pred CcHHHHHHHHHhHhhcC-CCCeEEEEEeeeeecCCCCC-CccccceEEEecceeeeCChHHHHHHHHHHHHHHHHHHHhh
Q 047998 186 SETIVNHMFTQWIHSYR-DLPLLVNQWANVTRWEMRTK-PFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEH 263 (558)
Q Consensus 186 ~e~~i~~~~~~~i~s~r-dLPlkl~q~~~vfR~E~~~r-GllR~REF~q~d~h~~~~~~~~a~~e~~~il~~y~~l~~~~ 263 (558)
++++++.+|+++++||| +||++++|||+|||||.+++ ||+|+|||+|+|+|+| |+++++.+|+..+++.+..++..
T Consensus 166 taqg~~~~f~~~~~syr~dLPlr~aq~g~~~RnE~s~~~gL~RvReF~q~e~hiF-~~peq~~~e~~~~l~~~~~~l~~- 243 (456)
T PRK04173 166 TAQGIFVNFKNVLRTARKKLPFGIAQIGKSFRNEITPRNFIFRTREFEQMELEFF-VKPGTDNEWFAYWIELRKNWLLD- 243 (456)
T ss_pred cchhHHHHHHHHHHhccccCCeeeeEEchhHhCccCCCCCceeeceeeeeEEEEE-ECcChHHHHHHHHHHHHHHHHHH-
Confidence 99999999999999999 99999999999999999965 8999999999999986 99999999999999988888776
Q ss_pred CCce---EEeecCCchhhccCCCcceEEEEEEcCccce------eecceEecCc--ccccccCeEEe--CCCCcee--eE
Q 047998 264 TAIP---VIAGRKSKVETFAGASRTYTIEAMMGDKRAL------QAGTSHNLGQ--NFSLAFGTQFT--DENGQRQ--HV 328 (558)
Q Consensus 264 l~ip---v~~g~k~~~ekf~Ga~~~~~ie~~~~dgr~l------q~gti~~Lg~--~~s~~f~i~y~--d~~g~~~--~v 328 (558)
++++ +........+++.|+..+|++++.+++|+.+ +.++.|+|.. +++ .|++.|. +.+|++. ++
T Consensus 244 lG~~~~~~~~s~~~~~e~~~ys~~~wd~e~~~~~g~~~~e~~g~~~~~dydL~~~~~~s-~~dl~y~~~~~~~~~~~P~v 322 (456)
T PRK04173 244 LGIDPENLRFREHLPEELAHYSKATWDIEYKFPFGRFWGELEGIANRTDYDLSRHSKHS-GEDLSYFDDETTGEKYIPYV 322 (456)
T ss_pred cCCCccceEEEecCcchhhccHHHHHhHHHhCCCCCcEEEEeeeeccchhhcccchhhc-CCCeEEEecCCCCceeeeEE
Confidence 6776 3333333345677888889887766667655 3355666654 333 5899998 4455543 35
Q ss_pred eeeccchHHHHHHHHHHHhCCC---------CCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEE
Q 047998 329 WQTSWAISTRFVGGIIMTHGDD---------TGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKL 399 (558)
Q Consensus 329 ~~~s~Gi~eRli~~lie~~~D~---------~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~v 399 (558)
...++| ++|++.++++.+.++ .|+.||+|+||+||+|+|++++ ++..++|.+|++.||++ ++|++
T Consensus 323 i~~siG-ieRl~~ail~~~~~~~~~~~~~~r~~l~~P~~lAP~qV~Iipi~~~----~e~~~~A~~la~~LR~~-irVel 396 (456)
T PRK04173 323 IEPSAG-LDRLLLAFLEDAYTEEELGGGDKRTVLRLPPALAPVKVAVLPLVKK----EKLSEKAREIYAELRKD-FNVDY 396 (456)
T ss_pred EEeccc-HHHHHHHHHHHHcccccccCCcceeEEECCCcCCCCEEEEEEecCc----HHHHHHHHHHHHHHHhc-CEEEE
Confidence 556688 899777766655443 3578999999999999999753 13678999999999999 99999
Q ss_pred eCCCCCCHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEcCCCCccccccccccChHHHHHHHHHH
Q 047998 400 DDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDK 466 (558)
Q Consensus 400 D~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~l 466 (558)
|++ .++|+|+++|++.|+|++|+||++|+++|+|+|++|+++++. .++++++++.|.++
T Consensus 397 D~~--~slgkkir~A~~~Gip~~IIIG~~El~~g~VtvR~r~t~eq~------~v~l~el~~~l~~~ 455 (456)
T PRK04173 397 DDS--GSIGKRYRRQDEIGTPFCITVDFDTLEDNTVTIRDRDTMEQV------RVKIDELKDYLAEK 455 (456)
T ss_pred eCC--CCHHHHHHHHHHcCCCEEEEECCchhhCCEEEEEECCCCceE------EEeHHHHHHHHHhh
Confidence 975 389999999999999999999999999999999999999886 78889887777543
No 19
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-53 Score=462.41 Aligned_cols=366 Identities=23% Similarity=0.389 Sum_probs=310.4
Q ss_pred ceeecCCCCcchHHHHHHHHH------------hccccccCC--CCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeec
Q 047998 77 RERVITPRSQDFNAWYLDVIS------------NAELADYGP--VRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYF 142 (558)
Q Consensus 77 ~~~~i~~~~~~~~~wy~~~~~------------~a~l~d~~~--vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~t 142 (558)
+++|..+.+..-.+-|...++ +.+|+.+++ ..|++.|+|.|+.+++.|+++++.....+||++|.|
T Consensus 165 riygta~~~~~~l~~~l~~~eea~krdHrklg~el~LF~~~~~~~~G~~~~~pkG~~ir~~le~y~~~~~~~~Gy~~V~T 244 (589)
T COG0441 165 RIYGTAFADKKELEAYLKRLEEAKKRDHRKLGKELDLFSFSPEEGPGLPFWHPKGATIRNLLEDYVRTKLRSYGYQEVKT 244 (589)
T ss_pred EEeccccCCHHHHHHHHhhhhhccCCchHhHHHhhcceeeccccCCcceEECCCcccHHHHHHHHHHHHHHhcCceEecC
Confidence 688888876555555655554 444555553 689999999999999999999999999999999999
Q ss_pred CccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC--
Q 047998 143 PQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-- 220 (558)
Q Consensus 143 P~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~-- 220 (558)
|++...++| +.||||+.|.+.||.+...+ +.|+|||++|++++.+|++..+|||+||+|++++|.|||+|.+
T Consensus 245 P~~~~~~l~-~~SGH~~~y~e~mf~~~~~~-----~~~~lKpmNCpgh~~ifk~~~~SYR~LP~r~~E~g~v~R~E~SGa 318 (589)
T COG0441 245 PVLADLELW-ELSGHWDNYKEDMFLTESDD-----REYALKPMNCPGHILIFKSGLRSYRELPLRLAEFGYVYRYEKSGA 318 (589)
T ss_pred Ceeeecccc-hhccchhhccccceeeccCC-----hhheeeeccCHhHHHHHhcCCcceeccchhhhhcceeecccCcch
Confidence 999999998 67999999999999987654 4899999999999999999999999999999999999999999
Q ss_pred CCCccccceEEEecceeeeCChHHHHHHHHHHHHHHHHHHHhhCCce-EEeecCCchhhccCCCcce-------------
Q 047998 221 TKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIP-VIAGRKSKVETFAGASRTY------------- 286 (558)
Q Consensus 221 ~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il~~y~~l~~~~l~ip-v~~g~k~~~ekf~Ga~~~~------------- 286 (558)
..||.|+|.|+|.|+|+| |+.+|+.+|+..+++....++.. +++. +....+++. +|.|.+..|
T Consensus 319 l~GL~RvR~ftqdDaHif-c~~dQi~~E~~~~~~~i~~v~~~-fg~~~y~~~ls~r~-k~ig~d~~W~~a~~~l~~al~~ 395 (589)
T COG0441 319 LHGLMRVRGFTQDDAHIF-CTPDQIKDEFKGILELILEVYKD-FGFTDYEVKLSTRP-KFIGSDEMWDKAEAALREALKE 395 (589)
T ss_pred hhccccccceeeccccee-ccHHHHHHHHHHHHHHHHHHHHh-cCCceEEEEEecCC-cccCChhhhHHHHHHHHHHHHh
Confidence 679999999999999999 88999999999888766665533 3443 222222221 333333222
Q ss_pred -----------------EEEEEEcC--ccceeecceEecCcccccccCeEEeCCCCcee---eEeeeccchHHHHHHHHH
Q 047998 287 -----------------TIEAMMGD--KRALQAGTSHNLGQNFSLAFGTQFTDENGQRQ---HVWQTSWAISTRFVGGII 344 (558)
Q Consensus 287 -----------------~ie~~~~d--gr~lq~gti~~Lg~~~s~~f~i~y~d~~g~~~---~v~~~s~Gi~eRli~~li 344 (558)
.+|+.+.| ||.+|+||++ ++.+++++|+++|.+.+|+.+ .+|.+.+|+++|++++|+
T Consensus 396 ~~~~~~~~~G~~aFyGPKid~~v~Dalgr~~q~~TIQ-lDf~lpeRF~l~Yv~~d~~~~~PvmiHrai~GSiERfi~iLi 474 (589)
T COG0441 396 IGVEYVEEPGEGAFYGPKIDFQVKDALGREWQLGTIQ-LDFNLPERFDLEYVDEDGEKKRPVIIHRAILGSIERFIGILL 474 (589)
T ss_pred hCceeeecCCceEEECcccceEEEeccCcceecceEE-EecCChhhceEEEEcCCCCccCCEEEEeccchhHHHHHHHHH
Confidence 24444555 8999999999 999999999999999887653 688999999999999999
Q ss_pred HHhCCCCCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEEEE
Q 047998 345 MTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIE 424 (558)
Q Consensus 345 e~~~D~~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~~Ii 424 (558)
++.. | .||.|+||+||+|+|+++. ..+||.++++.|+++||||++|++++ ++|+|++.|...+|||+|+
T Consensus 475 E~~~---G-~~P~WLaPvQv~VipV~~~------~~~ya~~v~~~L~~~giRvdvD~~~e-~l~kKIR~a~~~kipyiiV 543 (589)
T COG0441 475 EHYA---G-ALPTWLAPVQVRVIPVADE------HLDYAKEVAEKLRKAGIRVDIDDRNE-KLGKKIREAGTQKIPYVIV 543 (589)
T ss_pred Hhcc---C-CCcccCCccEEEEEEeChH------HHHHHHHHHHHHHHcCCeeeeccccc-chHHHHHHHHhcCCCEEEE
Confidence 9653 4 9999999999999999865 56999999999999999999999985 9999999999999999999
Q ss_pred eCceecCCCeEEEEEcCCCCccccccccccChHHHHHHHHHHHHH
Q 047998 425 IGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLDE 469 (558)
Q Consensus 425 IG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~ll~~ 469 (558)
||++|++++.|++++|.++++. +++++++++.|++..++
T Consensus 544 vG~kE~e~~~v~vR~r~~~~~~------~~~l~e~i~~ik~e~~~ 582 (589)
T COG0441 544 VGDKEVETGTVVVRRRGGKQQK------SMTLEELVEELKKEIEG 582 (589)
T ss_pred EchhhhccCceEEEEccCCccc------cccHHHHHHHHHHHhhc
Confidence 9999999999999999987776 68889998888776654
No 20
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=100.00 E-value=2.1e-53 Score=414.12 Aligned_cols=200 Identities=51% Similarity=0.817 Sum_probs=188.9
Q ss_pred CCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEEEEeCceecC
Q 047998 352 GLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVS 431 (558)
Q Consensus 352 Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~ 431 (558)
||+||+++||+||+|+|++.++++++.+.+++.+|++.|+++||+|++|+++..++|+||++|+++|+|++|+||++|++
T Consensus 1 GLvlP~~iAP~qVvIipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~r~~~s~g~K~~~ae~~GvP~~I~IG~~Ele 80 (202)
T cd00862 1 GLVLPPRVAPIQVVIVPIGIKDEKREEVLEAADELAERLKAAGIRVHVDDRDNYTPGWKFNDWELKGVPLRIEIGPRDLE 80 (202)
T ss_pred CCcCChhhcCceEEEEEecCCccchHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHhHHHHHHHhCCCCEEEEECcchhh
Confidence 79999999999999999976533445688999999999999999999999974499999999999999999999999999
Q ss_pred CCeEEEEEcCCCCccccccccccChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCeeecccHHHHHHHHhCCCEEEeeCCC
Q 047998 432 SGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLDEIQSALLERATSFRDSNIVDVSSYEELKEAISMGKWARGPWSA 511 (558)
Q Consensus 432 ~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~ll~~~~~~L~~rA~~~~~~~i~~v~~~ee~k~al~~~~~v~apwc~ 511 (558)
+|+|+|++|+++++. .++++++.+.|.++|++||++||+||++++++ |..++||+||+++++++|||++||||
T Consensus 81 ~g~V~v~~Rd~~ek~------~v~~~el~~~i~~ll~~i~~~l~~~A~~~~~~-~~~~~~~~e~~~~~~~~~~v~~~wcg 153 (202)
T cd00862 81 KNTVVIVRRDTGEKK------TVPLAELVEKVPELLDEIQEDLYERALEFRDA-TRIVDTWEEFKEALNEKGIVLAPWCG 153 (202)
T ss_pred CCEEEEEEecCCcce------EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-eEeeCCHHHHHHHHhcCCEEEEEecC
Confidence 999999999999887 79999999999999999999999999999999 99999999999999989999999999
Q ss_pred ChhhHHHHHHHhCCcccccccCCC--CCCccccccCCCcceEEEEeecC
Q 047998 512 SDADELKVKEETGATIRCFPFEQP--QGNKTCFMTGNPAQEVALFAKSY 558 (558)
Q Consensus 512 ~~~ce~~ik~~~~a~~~cip~~~~--~~~~~C~~~g~~a~~~~~~~rsY 558 (558)
+.+||++||++|+||+||||++++ ..+++|++||+||+.|++|||||
T Consensus 154 ~~~~e~~ik~~~~a~~~~ip~~~~~~~~~~~C~~~g~~a~~~~~~arsY 202 (202)
T cd00862 154 EEECEEEIKEETAATILCIPFDEAKLEEGGKCVVCGRPAKAYARFAKSY 202 (202)
T ss_pred CHHHHHHHHHhhCCeEeeeecCCcCCCCCCccCCcCCchheEEEEEEeC
Confidence 999999999999999999999886 45689999999999999999999
No 21
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.9e-51 Score=408.18 Aligned_cols=344 Identities=19% Similarity=0.304 Sum_probs=288.0
Q ss_pred HHHHHHHhccccccCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEe
Q 047998 91 WYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTI 170 (558)
Q Consensus 91 wy~~~~~~a~l~d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~ 170 (558)
=-++++.+.|++- ...+|+|-|+|.|.+..+++.+.++..|...|.+.|.+|+|.+.+|| +++|+|+...+|||.+.|
T Consensus 26 ~aq~LL~e~GfI~-ps~~G~yq~LPlg~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LW-ekTgRw~~~gsEl~rl~D 103 (457)
T KOG2324|consen 26 TAQELLQEVGFIR-PSSPGLYQLLPLGLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELW-EKTGRWDAMGSELFRLHD 103 (457)
T ss_pred HHHHHHHHhCccc-cCCCCceeeccchHHHHHHHHHHHHHHHHhccCeeEeecccChHHHH-HhcCcccccchhheEeec
Confidence 3567889999984 45789999999999999999999999999999999999999999999 559999999999999999
Q ss_pred cCCccccccccccCCCcHHHHHHHHHhHh-hcCCCCeEEEEEeeeeecCCCCC-CccccceEEEecceeeeCChHHHHHH
Q 047998 171 GGGKELEEKLVVRPTSETIVNHMFTQWIH-SYRDLPLLVNQWANVTRWEMRTK-PFVRTLEFLWQEGHTAHATPEEAEKE 248 (558)
Q Consensus 171 ~g~~~l~e~l~LRPt~e~~i~~~~~~~i~-s~rdLPlkl~q~~~vfR~E~~~r-GllR~REF~q~d~h~~~~~~~~a~~e 248 (558)
+.|+ .++|.||+|..+..+.+..+. ||++||+++||+|+.||+|.+|| ||+|-|||+|.|+|+|..+++.|.+.
T Consensus 104 r~gk----q~cL~pThEE~iT~lmat~~~lsykqlPi~vYQigrKfRDElrpRfGLlRgREFlMKDmYsFd~~~etA~qT 179 (457)
T KOG2324|consen 104 RKGK----QMCLTPTHEEDITALMATYIPLSYKQLPIRVYQIGRKFRDELRPRFGLLRGREFLMKDMYSFDSDEETAQQT 179 (457)
T ss_pred cCCC----EeccCCchHHHHHHHHHhcCccccccCcEEeeeechhhhhccCccccchhhHHHHHhhhhcccCCHHHHHHH
Confidence 9986 799999999999999999986 99999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCceEEeecCCc-----------------hhh---------ccCCCcceEEE--E--------EE
Q 047998 249 AMQMIDIYTKFAYEHTAIPVIAGRKSK-----------------VET---------FAGASRTYTIE--A--------MM 292 (558)
Q Consensus 249 ~~~il~~y~~l~~~~l~ipv~~g~k~~-----------------~ek---------f~Ga~~~~~ie--~--------~~ 292 (558)
+..+.++|.++|.+ |++|++.....- .|. |.+..+.+..- + .+
T Consensus 180 y~~v~~aY~~iFkq-L~~pfVkv~AdsG~iGG~vShEfhl~~~vgED~l~~C~~C~~s~n~e~~~~sk~~~Cp~C~~~~L 258 (457)
T KOG2324|consen 180 YQLVDQAYDRIFKQ-LGLPFVKVWADSGDIGGEVSHEFHLIHPVGEDTLMSCPSCGYSKNSEDLDLSKIASCPKCNEGRL 258 (457)
T ss_pred HHHHHHHHHHHHHH-cCCCeEEEeecccccCceeeeeEeccCccCccceeecCcCCccCchhhhcCCccccCCcccCCCc
Confidence 99999999999976 899986532110 000 11111111100 0 11
Q ss_pred cCccceeecceEecCcccccccCeEEeCCCCceeeEeeeccch-HHHHHHHHHHHhCCCCCCCCCCCCCCCcEEEEeCCC
Q 047998 293 GDKRALQAGTSHNLGQNFSLAFGTQFTDENGQRQHVWQTSWAI-STRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWK 371 (558)
Q Consensus 293 ~dgr~lq~gti~~Lg~~~s~~f~i~y~d~~g~~~~v~~~s~Gi-~eRli~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~ 371 (558)
..-+++++|+.|+||+.||+.||.+|.+..|+.+.+||+|||| ++|+|+|.++..+|++|++||..+||++|.+|+..+
T Consensus 259 ~~~~~IEVgHtF~LG~kYS~~lna~f~~~~gKpe~l~MgCyGIGVtRllaAa~evls~~~~lrwP~~iAPy~vcli~pk~ 338 (457)
T KOG2324|consen 259 TKTKSIEVGHTFLLGTKYSKPLNAKFVNVEGKPEFLHMGCYGIGVTRLLAAAAEVLSDDKGLRWPSLIAPYKVCLIGPKK 338 (457)
T ss_pred ccccceEEEEEEEeccccccccCceeeeecCCcceEEecceeccHHHHHHHHHHHhccccccccccccCcceeEEeccCC
Confidence 1146889999999999999999999999999988999999999 999999999999999999999999999996665544
Q ss_pred CcchhHHHHHHHHHHHHHHhhC------CcEEEEeCCCCCCHHHHHHHHHHcCCCEEEEeC-ceecCCCeEEEEEcCCCC
Q 047998 372 KADEKTGVLSAALSAKEVLQKS------GIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIG-PRDVSSGSVVISRRDVPG 444 (558)
Q Consensus 372 ~~~~~~~~~~~a~~I~~~Lr~~------Girv~vD~r~~~slgkk~~~ae~~GiP~~IiIG-~kEl~~~~V~Ik~rdt~e 444 (558)
.+. ...+.+++.+|-.. --.+.+|||.+.++|+++++|++.|+|++|||| ..-..+..+.|..+.+|+
T Consensus 339 ~~~-----~q~~~ev~~el~~~~~~~~l~~~iLlddr~~ltiG~Ri~dA~~lG~PfviVvg~s~~~~~~~~EV~~~~~ge 413 (457)
T KOG2324|consen 339 GSK-----SQRAQEVISELLNDEAVGNLHGEILLDDREELTIGKRIKDANRLGIPFVIVVGNSASWDNPEIEVRTIRWGE 413 (457)
T ss_pred cch-----hhhHHHHHHHhhcchhhhhhccceeccchhhhhhHHhhhhHHhcCCCEEEEEcccccCCCceEEEEEeecCc
Confidence 321 22333444433221 125889999889999999999999999999999 666778889999988787
Q ss_pred cc
Q 047998 445 KQ 446 (558)
Q Consensus 445 k~ 446 (558)
..
T Consensus 414 ~~ 415 (457)
T KOG2324|consen 414 SA 415 (457)
T ss_pred ee
Confidence 43
No 22
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=100.00 E-value=1.8e-50 Score=407.53 Aligned_cols=246 Identities=21% Similarity=0.377 Sum_probs=227.4
Q ss_pred HHHHHhccccccCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecC
Q 047998 93 LDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGG 172 (558)
Q Consensus 93 ~~~~~~a~l~d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g 172 (558)
.++|.++|+++ .+++|+++|+|.|+.+|++|++++++.++++||++|.||+|++.++| +.+||+++|.+|||+++|.+
T Consensus 7 ~~l~~~ag~~~-~~~~G~~~~lP~g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~-~~sg~~~~~~~emy~~~d~~ 84 (255)
T cd00779 7 HKLLLRAGFIR-QTSSGLYSWLPLGLRVLKKIENIIREEMNKIGAQEILMPILQPAELW-KESGRWDAYGPELLRLKDRH 84 (255)
T ss_pred HHHHHHcCCcc-cCCCceEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHH-HhcCCccccCcccEEEecCC
Confidence 58999999996 47899999999999999999999999999999999999999999999 55799999999999999987
Q ss_pred CccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecC-CCCCCccccceEEEecceeeeCChHHHHHHHHH
Q 047998 173 GKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWE-MRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQ 251 (558)
Q Consensus 173 ~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E-~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~ 251 (558)
++ +++||||+|++++.++++++.||++||+|+|||++|||+| ++++||+|+|||+|+|+|+||.++++|++|+..
T Consensus 85 ~~----~l~LrPt~e~~~t~~~~~~i~s~~~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~~~~a~~~~~~ 160 (255)
T cd00779 85 GK----EFLLGPTHEEVITDLVANEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDEESLEETYEK 160 (255)
T ss_pred CC----eEEEecCCcHHHHHHHHhccccHhhCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCCHHHHHHHHHH
Confidence 64 7999999999999999999999999999999999999999 667799999999999999999889999999999
Q ss_pred HHHHHHHHHHhhCCceEEeecCCchhhccCCC-cceEEEEEEcCccceeecceEecCcccccccCeEEeCCCCceeeEee
Q 047998 252 MIDIYTKFAYEHTAIPVIAGRKSKVETFAGAS-RTYTIEAMMGDKRALQAGTSHNLGQNFSLAFGTQFTDENGQRQHVWQ 330 (558)
Q Consensus 252 il~~y~~l~~~~l~ipv~~g~k~~~ekf~Ga~-~~~~ie~~~~dgr~lq~gti~~Lg~~~s~~f~i~y~d~~g~~~~v~~ 330 (558)
++++|.+++.+ |++|+..+.. ..+.+.|.. .+|.+|++|++++.+|+||+|+||++||++|+++|.|++|+.+++|+
T Consensus 161 i~~~~~~il~~-Lgl~~~~~~~-~~~~~gg~~s~~~~~e~~~~~~~~~e~~s~~~lg~~~sr~~~i~~~~~~~~~~~~~~ 238 (255)
T cd00779 161 MYQAYSRIFKR-LGLPFVKVEA-DSGAIGGSLSHEFHVLSPLKITKGIEVGHIFQLGTKYSKALGATFLDENGKPKPLEM 238 (255)
T ss_pred HHHHHHHHHHH-cCCcEEEEEe-cCCCCCCcccEEEEEEEecCCCCeEEEEeeeecchhHHHhcCcEEECCCCCEEeeEe
Confidence 99999999866 8999887764 456666633 35999999999999999999999999999999999999999999999
Q ss_pred eccch-HHHHHHHHHHH
Q 047998 331 TSWAI-STRFVGGIIMT 346 (558)
Q Consensus 331 ~s~Gi-~eRli~~lie~ 346 (558)
+|||+ ++|+|++++|+
T Consensus 239 ~~~gi~~~R~l~ai~e~ 255 (255)
T cd00779 239 GCYGIGVSRLLAAIIEQ 255 (255)
T ss_pred cCccchHHHHHHHHHcC
Confidence 99999 79999999973
No 23
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-50 Score=414.20 Aligned_cols=364 Identities=19% Similarity=0.282 Sum_probs=311.5
Q ss_pred CCCCcchHHHHHHHHHhccccccC-------------CCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccH
Q 047998 82 TPRSQDFNAWYLDVISNAELADYG-------------PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPY 148 (558)
Q Consensus 82 ~~~~~~~~~wy~~~~~~a~l~d~~-------------~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~ 148 (558)
++++....+.|....++|.+.|+. -.+|...|+|.|.+|++.+.++++.++.+.||+||.||.+...
T Consensus 143 sfp~~k~~k~~~~~~~Ea~~rdHRkig~~qeLfff~~lSPGS~FflP~G~~iyN~Lv~fir~ey~~rGf~EVitPniy~~ 222 (560)
T KOG1637|consen 143 SFPDPKQLKEWEKFQEEAKKRDHRKIGKEQELFFFHELSPGSCFFLPHGTRIYNTLVDFIRAEYRKRGFTEVITPNIYNK 222 (560)
T ss_pred cCCCHHHHHHHHhhchhhhhhhhhhhhhhhhheeeccCCCcceeeccCcchHHHHHHHHHHHHHHhcCCceecCcchhhh
Confidence 556666667777777777777752 2579999999999999999999999999999999999999999
Q ss_pred hhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC--CCCccc
Q 047998 149 SFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR--TKPFVR 226 (558)
Q Consensus 149 ~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~--~rGllR 226 (558)
.|| ..||||+.|.++||.|.-.. +.++|.||+|+++|.||++.-+|||+||+|+..+|.++|+|.+ ..||.|
T Consensus 223 ~LW-e~SGHwqnY~enmF~~e~ek-----e~~~LKPMNCPgHcLmf~~r~rS~reLPlR~aDFg~LHRnE~SGaLsGLTR 296 (560)
T KOG1637|consen 223 KLW-ETSGHWQNYSENMFKFEVEK-----EEFALKPMNCPGHCLMFAHRDRSYRELPLRFADFGVLHRNEASGALSGLTR 296 (560)
T ss_pred hhh-hhccchhhhhhhceeeeech-----hhhccCccCCCccccccccCCccHhhCCccccCcceeeeccccccccccce
Confidence 999 56999999999999998743 4799999999999999999999999999999999999999999 459999
Q ss_pred cceEEEecceeeeCChHHHHHHHHHHHHHHHHHHHhhCCceEEeecCCchhhccCCCc----------------------
Q 047998 227 TLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASR---------------------- 284 (558)
Q Consensus 227 ~REF~q~d~h~~~~~~~~a~~e~~~il~~y~~l~~~~l~ipv~~g~k~~~ekf~Ga~~---------------------- 284 (558)
+|.|+|.|+|+| |+++|..+|+..++++++.+|. .++..+-.-.+++.++|.|...
T Consensus 297 vRrFqQDDaHIF-Ct~~Qi~~Eik~~l~fl~~vY~-~fgf~f~l~lSTRPe~~lG~l~~Wd~AE~~L~~al~e~g~pw~l 374 (560)
T KOG1637|consen 297 VRRFQQDDAHIF-CTPDQVKEEIKGCLDFLDYVYG-VFGFTFKLNLSTRPEKFLGDLETWDEAEFKLEEALNESGEPWVL 374 (560)
T ss_pred eeeecccCceEE-ecCccHHHHHHHHHHHHHHHHH-hccccceeEeccChHHhccCHHHHHHHHHHHHHHHHHhCCCcee
Confidence 999999999998 9999999999999988777765 3443333333455556555433
Q ss_pred --------ceEEEEEEcC--ccceeecceEecCcccccccCeEEeCCCCce---eeEeeeccchHHHHHHHHHHHhCCCC
Q 047998 285 --------TYTIEAMMGD--KRALQAGTSHNLGQNFSLAFGTQFTDENGQR---QHVWQTSWAISTRFVGGIIMTHGDDT 351 (558)
Q Consensus 285 --------~~~ie~~~~d--gr~lq~gti~~Lg~~~s~~f~i~y~d~~g~~---~~v~~~s~Gi~eRli~~lie~~~D~~ 351 (558)
.-.||..+.| +|..||+|++ |+++++.+|++.|.+.+|.. ..+|...+|+++|++++|+|+.
T Consensus 375 N~GDGAFYGPKIDi~l~Dal~r~hQcaTIQ-LDFqLP~rFdL~y~~~~g~~erPVmIHRAIlGSvERmiaiL~E~~---- 449 (560)
T KOG1637|consen 375 NPGDGAFYGPKIDITLDDALGRKHQCATIQ-LDFQLPIRFDLEYETEDGDLERPVMIHRAILGSVERMIAILLESY---- 449 (560)
T ss_pred cCCCcccccceeeeEhhhhcCcccceeeee-ecccChhhcCceeecccccccchhhHHHHHhhhHHHHHHHHHHHh----
Confidence 3346777766 7889999998 99999999999999988754 3589999999999999999987
Q ss_pred CCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEEEEeCceecC
Q 047998 352 GLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVS 431 (558)
Q Consensus 352 Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~ 431 (558)
|..||.|++|.|++|||++.. ...||.+|..+|..+|+-+.+|.++ .+++++++.|...+..+.++||++|++
T Consensus 450 ~gkwPFWlSPRq~~vIpVse~------~~~ya~~V~~ql~~a~f~~Dld~t~-~tl~kkir~Aqla~yn~i~VVGdkE~~ 522 (560)
T KOG1637|consen 450 GGKWPFWLSPRQAVVIPVSEG------PLDYATSVQKQLEEAGFYVDLDPTD-STLRKKIRNAQLAHYNFIFVVGDKEVE 522 (560)
T ss_pred CCCCCeeeccceEEEEECCCc------chhHHHHHHHHHHhhhceeecCCcc-chHHHHHhhhhhcceeEEEEEchhhhh
Confidence 559999999999999999865 5789999999999999999999998 599999999999999999999999999
Q ss_pred CCeEEEEEcCCCCccccccccccChHHHHHHHHHHHH
Q 047998 432 SGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLD 468 (558)
Q Consensus 432 ~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~ll~ 468 (558)
.++|.|+.||+.... ... .++++++.+.++++-+
T Consensus 523 ~~~vnVr~Rd~~~~~-~~~--~~tie~~~~~~~~l~~ 556 (560)
T KOG1637|consen 523 TGRVNVRTRDNRDNK-TES--EMTIEELSDEFKELKS 556 (560)
T ss_pred cCceeeecccccccc-ccc--eeeHHHHHHHHHHhHh
Confidence 999999999776431 100 3667788777766543
No 24
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=100.00 E-value=8.9e-49 Score=403.75 Aligned_cols=255 Identities=21% Similarity=0.301 Sum_probs=226.0
Q ss_pred HHHHHHhccccccC--CCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEE
Q 047998 92 YLDVISNAELADYG--PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVT 169 (558)
Q Consensus 92 y~~~~~~a~l~d~~--~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~ 169 (558)
|.+++++.+++|+. .++|+++|+|.|+.+++.|++++++.++++||++|.||+|++.++|.+ +||+++|.++||+++
T Consensus 2 H~~l~~~~~l~~~~~~~~~G~~~~~p~g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~-sg~~~~~~~~my~~~ 80 (298)
T cd00771 2 HRRLGGELELFFFFDEAGPGLPFWLPKGAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWET-SGHWDHYRENMFPFE 80 (298)
T ss_pred hhHHHHHcCCcccCCCCCCcceEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhh-CCCccccccCceEec
Confidence 78899999999875 489999999999999999999999999999999999999999999966 899999999999997
Q ss_pred ecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC--CCCccccceEEEecceeeeCChHHHHH
Q 047998 170 IGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR--TKPFVRTLEFLWQEGHTAHATPEEAEK 247 (558)
Q Consensus 170 ~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~--~rGllR~REF~q~d~h~~~~~~~~a~~ 247 (558)
+.| +.++||||+|++++.++++++.||++||+|++|+|+|||+|.+ ++||+|+|||+|.|+|+| ++++++++
T Consensus 81 ~~~-----~~l~LRP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~-~~~e~~~~ 154 (298)
T cd00771 81 EED-----EEYGLKPMNCPGHCLIFKSKPRSYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIF-CTPDQIKE 154 (298)
T ss_pred cCC-----ceEEEcccCCHHHHHHHHhhccchhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEE-eCCcchHH
Confidence 543 4799999999999999999999999999999999999999998 679999999999999999 77788999
Q ss_pred HHHHHHHHHHHHHHhhCCc---eEEeecCCchhhccCCCc------------------------------ceEEEEEEcC
Q 047998 248 EAMQMIDIYTKFAYEHTAI---PVIAGRKSKVETFAGASR------------------------------TYTIEAMMGD 294 (558)
Q Consensus 248 e~~~il~~y~~l~~~~l~i---pv~~g~k~~~ekf~Ga~~------------------------------~~~ie~~~~d 294 (558)
|+..+++++.+++.. +++ ++..+.++ ++|.|+.+ ...||+.|.|
T Consensus 155 e~~e~l~~~~~~l~~-lgl~~~~i~l~~~~--~~~~~d~e~W~~a~~~l~e~l~~~~~~~~~~~g~~afygpkid~~~~d 231 (298)
T cd00771 155 EIKGVLDLIKEVYSD-FGFFDYKVELSTRP--EKFIGSDEVWEKAEAALREALEEIGLPYEINEGEGAFYGPKIDFHVKD 231 (298)
T ss_pred HHHHHHHHHHHHHHH-cCCCcEEEEEEcCh--hHhcCCHHHHHHHHHHHHHHHHhCCCCceECCCCcccccceEEEEEEe
Confidence 988888877777765 444 34444433 55555443 3568889986
Q ss_pred --ccceeecceEecCcccccccCeEEeCCCCceee---EeeeccchHHHHHHHHHHHhCCCCCCCCCCCCCC
Q 047998 295 --KRALQAGTSHNLGQNFSLAFGTQFTDENGQRQH---VWQTSWAISTRFVGGIIMTHGDDTGLMLPPRIAP 361 (558)
Q Consensus 295 --gr~lq~gti~~Lg~~~s~~f~i~y~d~~g~~~~---v~~~s~Gi~eRli~~lie~~~D~~Gl~lP~~lAP 361 (558)
||.+|+||+| ||++++++||++|.|.+|+.+. +|+++||++||+|++|+|+|+ ..||+|+||
T Consensus 232 ~~gr~~q~~t~q-ld~~~~~~f~l~y~~~~~~~~~pv~ih~~~~Gs~eR~i~~l~e~~~----g~~P~wlaP 298 (298)
T cd00771 232 ALGREWQCSTIQ-LDFNLPERFDLTYIGEDGEKKRPVMIHRAILGSIERFIGILIEHYA----GKFPLWLAP 298 (298)
T ss_pred CCCCeeecceeE-eeccChhhcCCEEEccCCCccCCEEEEeCCCCcHHHHHHHHHHhhC----CCCCCccCc
Confidence 9999999999 9999999999999999997655 999999999999999999994 499999998
No 25
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-47 Score=406.18 Aligned_cols=335 Identities=20% Similarity=0.284 Sum_probs=270.5
Q ss_pred ccCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCc-cccCCceEEEEecCCcccccccc
Q 047998 103 DYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHV-EGFSPELALVTIGGGKELEEKLV 181 (558)
Q Consensus 103 d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~-~~f~~Emy~~~~~g~~~l~e~l~ 181 (558)
..+.+|||.||+|..+.+|+.|.+.+++.++++||++|.||+||.+++|.+++|.. +...+|||.|+|+||+ .++
T Consensus 3 ~~~~prG~~D~lp~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr----~la 78 (429)
T COG0124 3 KIQRPRGTRDFLPEDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGR----SLA 78 (429)
T ss_pred CccCCCCccccChHHHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCCCC----EEE
Confidence 35679999999999999999999999999999999999999999999999887743 4478999999999985 899
Q ss_pred ccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHHH
Q 047998 182 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKFA 260 (558)
Q Consensus 182 LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l~ 260 (558)
|||+.|+++++++..+...+ .+|+|+|++|+|||||+||+| |+|||+|+|++++|...+.+|+|++.|+ ++++.++
T Consensus 79 LRpe~Tapv~R~~~en~~~~-~~p~k~yy~g~vfRyErPQ~G--R~RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~~lG 155 (429)
T COG0124 79 LRPELTAPVARAVAENKLDL-PKPLKLYYFGPVFRYERPQKG--RYRQFYQFGVEVIGSDSPDADAEVIALAVEILEALG 155 (429)
T ss_pred ecccCcHHHHHHHHhccccc-cCCeeEEEecceecCCCCCCC--CceeeEEcCeEEeCCCCcccCHHHHHHHHHHHHHcC
Confidence 99999999999998775544 389999999999999999999 9999999999999999999999999988 7999987
Q ss_pred HhhCCceEE-ee---------------------cC------Cchh------------------------hccCCC-----
Q 047998 261 YEHTAIPVI-AG---------------------RK------SKVE------------------------TFAGAS----- 283 (558)
Q Consensus 261 ~~~l~ipv~-~g---------------------~k------~~~e------------------------kf~Ga~----- 283 (558)
...+.+.+- +| ++ ...+ -+..++
T Consensus 156 i~~~~l~iN~~g~l~~~~~~~gi~~~~~l~~~ldk~~k~~~~~L~e~~~~r~~~n~lr~ld~k~~~~~~~~~~ap~i~~~ 235 (429)
T COG0124 156 IGGFTLEINSRGILEGRLEYLGIDQREALLRYLDKLDKIGKLELDEDSKRRLKTNPLRVLDSKKDSDQELLKNAPELLDY 235 (429)
T ss_pred CCcEEEEEcCcccHHHHHHhhcchhHHHHHHHHhhhhhHHHHHhhhhhhhhhhhchHHHHHhccchHHHHHhccHHhhhh
Confidence 652111110 00 00 0000 000010
Q ss_pred --------------------cceEEEEEEcCcccee--ecceEec-----CcccccccCeEEeCC----CCceeeEeeec
Q 047998 284 --------------------RTYTIEAMMGDKRALQ--AGTSHNL-----GQNFSLAFGTQFTDE----NGQRQHVWQTS 332 (558)
Q Consensus 284 --------------------~~~~ie~~~~dgr~lq--~gti~~L-----g~~~s~~f~i~y~d~----~g~~~~v~~~s 332 (558)
..|.++..+ .|||+ +||+|+. |.+-+-+-|.+|++. .|+. ++..+
T Consensus 236 ~~~e~~~~~~~v~~~L~~~g~~~~id~~l--vRGLDYYtg~VFE~~~~~~~~~~sI~gGGRYD~Lv~~~gG~~--~pavG 311 (429)
T COG0124 236 LDEESLEHLEELLALLDALGISYEIDPSL--VRGLDYYTGTVFEAVTDGLGAQGSVCGGGRYDGLVEEFGGKP--TPAVG 311 (429)
T ss_pred ccHHHHHHHHHHHHHHHHcCCCEEEccce--ecchhhccceEEEEEEcCCccccceecCccchHHHHHhCCCC--CCcee
Confidence 113344333 67776 5999864 434567788999863 3543 55667
Q ss_pred cch-HHHHHHHHHHHhCCCCCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHH
Q 047998 333 WAI-STRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKF 411 (558)
Q Consensus 333 ~Gi-~eRli~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~ 411 (558)
|++ +||++.+|.+. |... +.-++.+|+|+++++. ...+|.+|++.||++|++|++|... +++++||
T Consensus 312 FaiGveRl~~~l~~~-----~~~~-~~~~~~~v~v~~~~~~------~~~~a~~la~~LR~~g~~~~~~~~~-r~~k~q~ 378 (429)
T COG0124 312 FAIGVERLILALEEE-----GKED-PVETRVDVYVVPLGED------AEPEALKLAQKLRAAGISVEVDYSG-RKLKKQF 378 (429)
T ss_pred EehHHHHHHHHHHHc-----CCCC-CcCCCCCEEEEEcCch------hHHHHHHHHHHHHHcCCcEEEEecc-ccHHHHH
Confidence 777 99999988764 3222 2245789999999875 3588999999999999999999997 5899999
Q ss_pred HHHHHcCCCEEEEeCceecCCCeEEEEEcCCCCccccccccccChHHHHHHHHHHH
Q 047998 412 NFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKL 467 (558)
Q Consensus 412 ~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~ll 467 (558)
++|++.|++++|+||++|+++|+|+|||+.|++|. .++++++++.+...+
T Consensus 379 k~A~~~g~~~~viiGe~E~~~g~v~vKdl~t~eq~------~v~~~~~~~~~~~~~ 428 (429)
T COG0124 379 KYADKLGARFAVILGEDELANGVVTVKDLATGEQE------EVPLDELVEELKELL 428 (429)
T ss_pred HHHHHCCCCEEEEEcchHHhcCCEEEeeCCCCccc------eecHHHHHHHHHhhc
Confidence 99999999999999999999999999999999887 899999998887653
No 26
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=100.00 E-value=7.8e-45 Score=374.06 Aligned_cols=263 Identities=17% Similarity=0.216 Sum_probs=239.9
Q ss_pred HHHHHHHHhccccccCC---C--CcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCc
Q 047998 90 AWYLDVISNAELADYGP---V--RGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPE 164 (558)
Q Consensus 90 ~wy~~~~~~a~l~d~~~---v--kG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~E 164 (558)
+.|.+++++++|+|+.+ + +|++.|+|.|++++++|++++++.+.+.||++|.||.|++.++| +.+||+++|.++
T Consensus 19 ~~H~~i~~~~~l~d~~~~~~~~G~g~~~~~p~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~-~~sg~~~~~~~~ 97 (297)
T cd00770 19 KDHVELGEKLDILDFERGAKVSGSRFYYLKGDGALLERALINFALDFLTKRGFTPVIPPFLVRKEVM-EGTGQLPKFDEQ 97 (297)
T ss_pred CCHHHHHHHCCCccchhhcccCCCceeEECCHHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHH-hhcCcCccChhc
Confidence 56999999999999742 3 46999999999999999999999999999999999999999999 558999999999
Q ss_pred eEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCC-----CCccccceEEEecceeee
Q 047998 165 LALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRT-----KPFVRTLEFLWQEGHTAH 239 (558)
Q Consensus 165 my~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~-----rGllR~REF~q~d~h~~~ 239 (558)
||++++ +.++|+||+|++++.+|++++.||++||+|++|+|+|||+|.++ +||+|+|||+|.|+|+|
T Consensus 98 ~f~v~~-------~~~~L~pt~e~~~~~l~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~f- 169 (297)
T cd00770 98 LYKVEG-------EDLYLIATAEVPLAALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFVF- 169 (297)
T ss_pred ccEecC-------CCEEEeecCCHHHHHHHhcccCCHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEEE-
Confidence 999975 37999999999999999999999999999999999999999884 69999999999999998
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhhCCceEEeecCCchhhccCCCcceEEEEEEc-CccceeecceEecCcccccccCeEE
Q 047998 240 ATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMG-DKRALQAGTSHNLGQNFSLAFGTQF 318 (558)
Q Consensus 240 ~~~~~a~~e~~~il~~y~~l~~~~l~ipv~~g~k~~~ekf~Ga~~~~~ie~~~~-dgr~lq~gti~~Lg~~~s~~f~i~y 318 (558)
++++++++++..++++|.+++.. |++|+.....+..+.+.++..+|.+|++++ +++..+++++++.|+.++++++++|
T Consensus 170 ~~~e~~~~~~~~~l~~~~~i~~~-lgl~~~~~~~~~~dl~~~~~~~~d~e~~~p~~~~~~e~~s~s~~~d~~s~r~~i~y 248 (297)
T cd00770 170 TKPEESWEELEELISNAEEILQE-LGLPYRVVNICTGDLGFAAAKKYDIEAWMPGQGKYREISSCSNCTDFQARRLNIRY 248 (297)
T ss_pred ECchHHHHHHHHHHHHHHHHHHH-cCCcEEEEEccCccccCchhhheeeheecCCCCCeEEEEEccCccChhhhhcCcEE
Confidence 77799999999999999999976 899988877777777778888999999997 4666788898899999999999999
Q ss_pred eCCC-CceeeEee-eccch-HHHHHHHHHHHhCCCCCCCCCC-CCCCC
Q 047998 319 TDEN-GQRQHVWQ-TSWAI-STRFVGGIIMTHGDDTGLMLPP-RIAPI 362 (558)
Q Consensus 319 ~d~~-g~~~~v~~-~s~Gi-~eRli~~lie~~~D~~Gl~lP~-~lAP~ 362 (558)
.+.+ |+.+++|+ +|+|+ ++|+|++|+|+|+|++|++||| .++|+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~R~l~alle~~~~~~g~v~~P~~l~py 296 (297)
T cd00770 249 RDKKDGKKQYVHTLNGTALATPRTIVAILENYQTEDGSVVIPEVLRPY 296 (297)
T ss_pred ecCCCCCeeeeeEecccchHHHHHHHHHHHhCcCCCCcEeCchhhccc
Confidence 9984 88889999 89999 9999999999999999998885 46665
No 27
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=100.00 E-value=1.1e-42 Score=375.31 Aligned_cols=336 Identities=16% Similarity=0.174 Sum_probs=263.6
Q ss_pred cCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhc-CccccCCceEEEEecCCccccccccc
Q 047998 104 YGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEAS-HVEGFSPELALVTIGGGKELEEKLVV 182 (558)
Q Consensus 104 ~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sg-h~~~f~~Emy~~~~~g~~~l~e~l~L 182 (558)
.++++|++|++|.++..|+.|++.+++.|+++||++|.||+|++.++|.+.+| |++.+.++||.|.|.+|+ .++|
T Consensus 4 ~~~p~G~~D~lp~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~~g~----~l~L 79 (430)
T CHL00201 4 IQAIRGTKDILPDEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRSNR----DITL 79 (430)
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcCCCC----EEEe
Confidence 46799999999999999999999999999999999999999999999977655 888788999999998774 8999
Q ss_pred cCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHHHH
Q 047998 183 RPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKFAY 261 (558)
Q Consensus 183 RPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l~~ 261 (558)
||+.|++++++++....+++++|+|+||+|+|||+|+|++| |+|||+|+|+|++|.....||+|++.++ ++++.++.
T Consensus 80 Rpd~T~~iaR~~~~~~~~~~~~p~R~~y~g~vfR~e~~q~G--R~Ref~Q~g~EiiG~~~~~aD~Evi~l~~~~l~~lGl 157 (430)
T CHL00201 80 RPEGTAGIVRAFIENKMDYHSNLQRLWYSGPMFRYERPQSG--RQRQFHQLGIEFIGSIDARADTEVIHLAMQIFNELQV 157 (430)
T ss_pred CCCCcHHHHHHHHHccccccCCCeEEEEEcceecCCCCcCC--ccceeEEeceEEECCCChhhHHHHHHHHHHHHHHcCC
Confidence 99999999999877766778899999999999999999999 9999999999999999999999999887 88888875
Q ss_pred hhCCceEEeecC------------------------C-----ch--------h--------hccCCCc------------
Q 047998 262 EHTAIPVIAGRK------------------------S-----KV--------E--------TFAGASR------------ 284 (558)
Q Consensus 262 ~~l~ipv~~g~k------------------------~-----~~--------e--------kf~Ga~~------------ 284 (558)
+.+. +..|.. + .. + .+.++..
T Consensus 158 ~~~~--i~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~l~~k~~~~~~~~~~a~~l~~~~~~~~~~~ 235 (430)
T CHL00201 158 KNLI--LDINSIGKLEDRQSYQLKLVEYLSQYQDDLDTDSQNRLYSNPIRILDSKNLKTQEILDGAPKISDFLSLESTEH 235 (430)
T ss_pred CceE--EEECCCCchhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHhhhHHHhhccCccHHHHHhhhHHHHhhhhHHHHHH
Confidence 4211 111110 0 00 0 0000000
Q ss_pred ---------ceEEEEEE--cCcccee--ecceEec-----CcccccccCeEEeCC---C-CceeeEeeeccch-HHHHHH
Q 047998 285 ---------TYTIEAMM--GDKRALQ--AGTSHNL-----GQNFSLAFGTQFTDE---N-GQRQHVWQTSWAI-STRFVG 341 (558)
Q Consensus 285 ---------~~~ie~~~--~dgr~lq--~gti~~L-----g~~~s~~f~i~y~d~---~-g~~~~v~~~s~Gi-~eRli~ 341 (558)
.+.+...+ .-.|++. .|++|+. +...+-.-|.+|++. . |...| .++|++ ++|++.
T Consensus 236 l~~~~~~l~~~g~~~~~Dl~lvRgldYYTG~vFE~~~~~~~~~~~i~gGGRYD~L~~~fg~~~~P--avGfa~g~erl~~ 313 (430)
T CHL00201 236 FYDVCTYLNLLNIPYKINYKLVRGLDYYNDTAFEIKTLSSNGQDTICGGGRYDSLIHQLGGPKTP--AVGCAIGLERLLL 313 (430)
T ss_pred HHHHHHHHHHcCCcEEECcccccCCccccccEEEEEECCCCCcceeeeccchHHHHHHhCCCCCC--eeEEEecHHHHHH
Confidence 00111111 1146665 4778743 122345567888763 2 33334 445666 999998
Q ss_pred HHHHHhCCCCCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCE
Q 047998 342 GIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPL 421 (558)
Q Consensus 342 ~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~ 421 (558)
+|.+ + ...|. .|.+|+|+|++.+ ...+|.++++.||++|++|++|... .++++++++|++.|+|+
T Consensus 314 ~l~~-~-----~~~~~--~~~~v~v~~~~~~------~~~~a~~ia~~LR~~Gi~veid~~~-~~l~k~~k~A~~~~~~~ 378 (430)
T CHL00201 314 IAKD-N-----IILPK--QSIDVYIATQGLK------AQKKGWEIIQFLEKQNIKFELDLSS-SNFHKQIKQAGKKRAKA 378 (430)
T ss_pred HHhc-c-----ccCCC--CCCCEEEEEcCHH------HHHHHHHHHHHHHhCCCeEEEeeCC-CCHHHHHHHHHHcCCCE
Confidence 7653 2 12333 4678999998653 5788999999999999999999987 59999999999999999
Q ss_pred EEEeCceecCCCeEEEEEcCCCCccccccccccChHHHHHHHHHHHHHH
Q 047998 422 RIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLDEI 470 (558)
Q Consensus 422 ~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~ll~~~ 470 (558)
+++||++|+++|+|+||++.++++. .++++++++.+.++...|
T Consensus 379 viiiG~~E~~~~~vtvk~l~~~~q~------~i~~~~~~~~~~~~~~~~ 421 (430)
T CHL00201 379 CIILGDNEIMDNCITIKWLDEQVQE------NAQYSNFKQEISYLKKKI 421 (430)
T ss_pred EEEEechHHhCCcEEEEECCCCCcE------EEcHHHHHHHHHHHHHhh
Confidence 9999999999999999999999886 788999888777776655
No 28
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=100.00 E-value=9.2e-44 Score=378.79 Aligned_cols=264 Identities=20% Similarity=0.297 Sum_probs=227.0
Q ss_pred CCCcchHHHHHHHHHhccccccCCCCcceEeCchhHHHHHHHHHHHH-HHHHHcCCeeeecCccccHhhHhhhhcCcccc
Q 047998 83 PRSQDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLN-VKFKETGHSNMYFPQFIPYSFIEKEASHVEGF 161 (558)
Q Consensus 83 ~~~~~~~~wy~~~~~~a~l~d~~~vkG~~~~lP~g~~i~~~I~~~i~-~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f 161 (558)
+++-+|++||.+++++++++|+.+++|+++|.|.|++||++|++++. ..++++||+++++|.|+|.+++.++ ||+++|
T Consensus 188 ~~~~~F~~~h~el~~k~glidk~~G~G~~vl~p~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~-ghl~gF 266 (520)
T TIGR00415 188 KRDFFFDGDPTDEAEKLGWVKKFPGRGQWFYGPKITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKM-RYLEGL 266 (520)
T ss_pred CCCCCCCCCHHHHHHHCCCeeEEcccCEEEEeCHHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHccc-CCCCCC
Confidence 35668999999999999999999999999999999999999999995 6778899999999999999999664 999999
Q ss_pred CCceEEEEecCC--------------------ccc----cc-cccccCCCcHHHHHHHHHhHhhcCCCCeEEEE-Eeeee
Q 047998 162 SPELALVTIGGG--------------------KEL----EE-KLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQ-WANVT 215 (558)
Q Consensus 162 ~~Emy~~~~~g~--------------------~~l----~e-~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q-~~~vf 215 (558)
.++||++++.++ .+| ++ .++|+||+|++++.+|++|+.++++||++++| |++||
T Consensus 267 ~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~~L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CF 346 (520)
T TIGR00415 267 PEGMYYCCAPKRDPELFEEFKNELIIKKEIPIDKLKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTY 346 (520)
T ss_pred chhheEEecCCCCcchhhccccccccccccccccccccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeE
Confidence 999999986443 111 23 79999999999999999999999999999999 77999
Q ss_pred ecCCC-CCCccccceEEEecceeeeCChHHHHHHHHHHHHHHHHHHHhhCCceEE----------eecCCchh--hccCC
Q 047998 216 RWEMR-TKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVI----------AGRKSKVE--TFAGA 282 (558)
Q Consensus 216 R~E~~-~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il~~y~~l~~~~l~ipv~----------~g~k~~~e--kf~Ga 282 (558)
|||.. ++||+|++||+|+|+|+ ++++++|.++...+++.|..++. .|++|+. .|.++..+ +|+|+
T Consensus 347 R~EaGstrGL~RvhEF~kvE~v~-~~tpEea~e~~e~mle~~~~~l~-~L~Lpyrv~~adDPFf~~g~k~~~~dl~F~~a 424 (520)
T TIGR00415 347 RWEAGGAKGLDRVHEFLRVECVW-IAEPEETEEIRDKTLELAEDAAD-ELDLEWWTEVGDDPFYLEGRKKEDRGIEFPDV 424 (520)
T ss_pred eCCCCCCCCCceeeEEEEEEEEE-EeCHHHHHHHHHHHHHHHHHHHH-HcCCCeEEeecCCcccccccCcccccccCccc
Confidence 99998 89999999999999999 69999999999999999999985 4899653 23333344 57665
Q ss_pred CcceEEEEEEc------CccceeecceEecCcccccccCeEEeCCCCceeeEeeeccch-HHHHHHHHHHHhCCCCCCCC
Q 047998 283 SRTYTIEAMMG------DKRALQAGTSHNLGQNFSLAFGTQFTDENGQRQHVWQTSWAI-STRFVGGIIMTHGDDTGLML 355 (558)
Q Consensus 283 ~~~~~ie~~~~------dgr~lq~gti~~Lg~~~s~~f~i~y~d~~g~~~~v~~~s~Gi-~eRli~~lie~~~D~~Gl~l 355 (558)
.+|.++++++ ||+++|.+|+| |++|+++|+|+ +|+..++|++|||+ +||++++|+++||=|-. .|
T Consensus 425 -~KyDlevwiP~~~~~~~g~AlqS~n~H--g~hF~k~F~I~----~~~~~~a~ttC~G~gleR~i~Ali~~HG~d~~-~W 496 (520)
T TIGR00415 425 -PKYEMRLSLPGIEDERKGVAVTSANVH--GTHFIEGFRIK----DAKGLNIWTGCTGIGISRWIVGFLAQKGFEFD-DW 496 (520)
T ss_pred -ceEEEEEEEccccCCCCCcEEEEeech--hcccccccCcc----cCCCCeEEEeeeeccHHHHHHHHHHHhCCChh-hC
Confidence 5566666653 79999999999 99999999997 45556899999999 69999999999964332 45
Q ss_pred CC
Q 047998 356 PP 357 (558)
Q Consensus 356 P~ 357 (558)
|.
T Consensus 497 p~ 498 (520)
T TIGR00415 497 HD 498 (520)
T ss_pred CH
Confidence 54
No 29
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=100.00 E-value=4.3e-43 Score=375.76 Aligned_cols=264 Identities=16% Similarity=0.195 Sum_probs=240.6
Q ss_pred HHHHHHHHHhccccccCC-----CCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCC
Q 047998 89 NAWYLDVISNAELADYGP-----VRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSP 163 (558)
Q Consensus 89 ~~wy~~~~~~a~l~d~~~-----vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~ 163 (558)
...|.+++++++++|+.+ .+|++.|+|.|++++++|++++.+.+.+.||++|.+|.|.+.++| ..+||+++|.+
T Consensus 139 ~~~H~~l~~~l~l~d~~~~~~~~G~g~~~~~p~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~-~~~G~~~~f~~ 217 (418)
T TIGR00414 139 PKPHWELGEKLGGLDFDRAVKVTGSRFYYLKNDGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESL-DGTGQLPKFEE 217 (418)
T ss_pred CCCHHHHHHhCCCccccccccCCCCCeeeeccHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHH-hhcCccccccc
Confidence 368999999999999743 356899999999999999999999999999999999999999999 66999999999
Q ss_pred ceEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC-----CCCccccceEEEecceee
Q 047998 164 ELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-----TKPFVRTLEFLWQEGHTA 238 (558)
Q Consensus 164 Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~-----~rGllR~REF~q~d~h~~ 238 (558)
+||++++ ++++|+||+|++++.++++++.||++||+|++||++|||+|.. ++||+|+|||+|.|+|+|
T Consensus 218 ~~y~i~~-------~~~~L~pTsE~~~~~~~~~~i~s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~~f 290 (418)
T TIGR00414 218 DIFKLED-------TDLYLIPTAEVPLTNLHRNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELVKF 290 (418)
T ss_pred cceEecC-------CCEEEEeCCcHHHHHHHhCcCCChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEEEE
Confidence 9999964 3699999999999999999999999999999999999999985 579999999999999987
Q ss_pred eCChHHHHHHHHHHHHHHHHHHHhhCCceEEeecCCchhhccCCCcceEEEEEEcCccce-eecceEecCcccccccCeE
Q 047998 239 HATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGDKRAL-QAGTSHNLGQNFSLAFGTQ 317 (558)
Q Consensus 239 ~~~~~~a~~e~~~il~~y~~l~~~~l~ipv~~g~k~~~ekf~Ga~~~~~ie~~~~dgr~l-q~gti~~Lg~~~s~~f~i~ 317 (558)
++++++.+++..++++|..++.. |++|+.....+..+.+.++..+|.+|++++.+.++ ++++++++|+.+|++|+++
T Consensus 291 -~~~e~s~~~~~~~~~~~~~i~~~-Lglp~r~v~~~t~dlg~~a~~~ydiE~w~p~~~~~~ev~s~sn~~d~qsrr~~i~ 368 (418)
T TIGR00414 291 -CKPEESAEELEEMTSDAEQILQE-LELPYRVVNLCSGDLGFSAAKKYDLEVWMPGQNTYREISSCSNCTDFQARRLNIR 368 (418)
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHH-cCCceEEEecCccccccCHhhhhhHHHhCCCcCceEEEEEEcCcchHhHHhCCcE
Confidence 89999999999999999999975 89999877666677778888999999999987666 7888889999999999999
Q ss_pred EeCCC-CceeeEee-eccch-HHHHHHHHHHHhCCCCCCC-CCCCCCCC
Q 047998 318 FTDEN-GQRQHVWQ-TSWAI-STRFVGGIIMTHGDDTGLM-LPPRIAPI 362 (558)
Q Consensus 318 y~d~~-g~~~~v~~-~s~Gi-~eRli~~lie~~~D~~Gl~-lP~~lAP~ 362 (558)
|.+.+ |+.+++|+ +|+|+ ++|+|++|+|+|+|+.|++ ||..++|+
T Consensus 369 y~~~~~~~~~~vh~ln~~~~ai~R~i~Aile~~~~~~G~i~iP~~l~py 417 (418)
T TIGR00414 369 YKDKNKGKNKYVHTLNGTALAIGRTIVAILENYQTEDGSVEIPEVLRKY 417 (418)
T ss_pred EECCCCCceEEEEeecCcchHHHHHHHHHHHHccCCCCCEeCChhcccc
Confidence 99875 45579999 89998 8999999999999999965 99999986
No 30
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.6e-42 Score=372.11 Aligned_cols=270 Identities=16% Similarity=0.196 Sum_probs=244.3
Q ss_pred CCcch-HHHHHHHHHhccccccCC-----CCcceEeCchhHHHHHHHHHHHHHHHH-HcCCeeeecCccccHhhHhhhhc
Q 047998 84 RSQDF-NAWYLDVISNAELADYGP-----VRGTMVIRPYGYAIWEAIQDYLNVKFK-ETGHSNMYFPQFIPYSFIEKEAS 156 (558)
Q Consensus 84 ~~~~~-~~wy~~~~~~a~l~d~~~-----vkG~~~~lP~g~~i~~~I~~~i~~~~~-~~G~~ei~tP~l~~~~l~~k~sg 156 (558)
+.-+| ...|.+++++.+|+|+.+ .+|++.|+|.|.+++++|++++.+.+. +.||++|.||.|.+.++| ..+|
T Consensus 130 ~~~~f~~~dH~ei~~~l~l~d~~~~~~~~G~g~~~l~p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~-~~~G 208 (425)
T PRK05431 130 REFDFEPKDHWELGEKLGILDFERAAKVSGSRFYVLKGDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESM-YGTG 208 (425)
T ss_pred CCCCCCCCCHHHHHhhcCceecccccccCCceeEEECcHHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHH-hhcC
Confidence 34456 378999999999999853 456999999999999999999988887 999999999999999999 5589
Q ss_pred CccccCCceEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC-----CCCccccceEE
Q 047998 157 HVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-----TKPFVRTLEFL 231 (558)
Q Consensus 157 h~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~-----~rGllR~REF~ 231 (558)
|+++|.++||++++ ++++|+||+|++++.+|++++.||++||+|++++++|||+|.. ++||+|+|||+
T Consensus 209 ~~~~f~~~ly~i~~-------~~~~L~pTsE~~l~~l~~~~~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~ 281 (425)
T PRK05431 209 QLPKFEEDLYKIED-------DDLYLIPTAEVPLTNLHRDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFD 281 (425)
T ss_pred ccccchhhceEecC-------CCEEEEeCCcHHHHHHHhcccCCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeee
Confidence 99999999999963 3799999999999999999999999999999999999999984 57999999999
Q ss_pred EecceeeeCChHHHHHHHHHHHHHHHHHHHhhCCceEEeecCCchhhccCCCcceEEEEEEcC-ccceeecceEecCccc
Q 047998 232 WQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD-KRALQAGTSHNLGQNF 310 (558)
Q Consensus 232 q~d~h~~~~~~~~a~~e~~~il~~y~~l~~~~l~ipv~~g~k~~~ekf~Ga~~~~~ie~~~~d-gr~lq~gti~~Lg~~~ 310 (558)
|.|+|+| ++++++++++..|+++|..++.. |++|+.....+..+...++.++|.+|++++. ++..+++++++.++.+
T Consensus 282 k~E~~~f-~~~e~s~~~~~~~l~~~~~i~~~-Lglpyr~v~~~s~dlg~~a~~~~DiE~w~p~~~~~~ev~s~snc~d~q 359 (425)
T PRK05431 282 KVELVKF-TKPEDSYAELEELTANAEEILQK-LELPYRVVLLCTGDLGFSAAKTYDLEVWLPSQNTYREISSCSNCTDFQ 359 (425)
T ss_pred eeeEEEE-ECHHHHHHHHHHHHHHHHHHHHH-cCCcEEEEEcCCcccCCchHheecHHHhCcccCCeeEEEEecCccchh
Confidence 9999987 88899999999999999999976 8999988776667777778889999999974 6667888989999999
Q ss_pred ccccCeEEeCC-CCceeeEee-eccch-HHHHHHHHHHHhCCCCC-CCCCCCCCCCc
Q 047998 311 SLAFGTQFTDE-NGQRQHVWQ-TSWAI-STRFVGGIIMTHGDDTG-LMLPPRIAPIQ 363 (558)
Q Consensus 311 s~~f~i~y~d~-~g~~~~v~~-~s~Gi-~eRli~~lie~~~D~~G-l~lP~~lAP~q 363 (558)
|++++++|.+. +|+..++|+ +|+|+ ++|+|++|+|+|+|+.| ++||+.++|+.
T Consensus 360 srr~~i~~~~~~~~~~~~~htln~t~~a~~R~l~ailE~~q~~~g~i~iP~~l~py~ 416 (425)
T PRK05431 360 ARRANIRYRDEGDGKPELVHTLNGSGLAVGRTLVAILENYQQADGSVTIPEVLRPYM 416 (425)
T ss_pred hhhcCcEEecCCCCceeEEEEeCCchhhHHHHHHHHHHHCCCCCCcEECChhhhccc
Confidence 99999999998 788889996 99999 89999999999999999 99999999985
No 31
>PLN02734 glycyl-tRNA synthetase
Probab=100.00 E-value=1.8e-40 Score=365.63 Aligned_cols=365 Identities=20% Similarity=0.253 Sum_probs=255.0
Q ss_pred CcchHHHHHHHHHhccccc-----cCCCCcceEeCchhHHHHHHHHHHHHHHHH-HcCCeeeecCccccHhhHhhhhcCc
Q 047998 85 SQDFNAWYLDVISNAELAD-----YGPVRGTMVIRPYGYAIWEAIQDYLNVKFK-ETGHSNMYFPQFIPYSFIEKEASHV 158 (558)
Q Consensus 85 ~~~~~~wy~~~~~~a~l~d-----~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~-~~G~~ei~tP~l~~~~l~~k~sgh~ 158 (558)
.+.|.+-..+++.+-+++- |+.++|+|||.|.|..+.++|.+.||+.|- ..++.+|++|+|.|..+| +.|||+
T Consensus 71 ~~~~~~~l~~l~krRgF~~pSfeIYGGvaG~yDyGP~G~~lK~ni~~~Wr~~fv~~e~mleid~~~i~p~~V~-kASGHv 149 (684)
T PLN02734 71 KEAFRQAVVNTLERRLFYIPSFKIYGGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEENMLEVECPCVTPEVVL-KASGHV 149 (684)
T ss_pred hhHHHHHHHHHHHhcCCccccccccCCcccccccCcchHHHHHHHHHHHHHHHhccCCeeEeeccccCCHhHe-eecCCc
Confidence 3446777778888888774 457999999999999999999999999994 557789999999999999 889999
Q ss_pred cccCCceEEEEecC------------------------------------------------------------Cccc--
Q 047998 159 EGFSPELALVTIGG------------------------------------------------------------GKEL-- 176 (558)
Q Consensus 159 ~~f~~Emy~~~~~g------------------------------------------------------------~~~l-- 176 (558)
+.|.+-|-....+| |.+|
T Consensus 150 d~F~D~mv~~~~~~~~~RADhlie~~~~~~~~~~~~~~~~~~~e~~~~~~~~d~~~~~el~~~i~~~~ik~P~~g~~l~~ 229 (684)
T PLN02734 150 DKFTDLMVKDEKTGTCFRADHLLKDFCEEKLEKDLTISAEKAAELKDVLAVLDDLSAEELGAKIKEYGIKAPDTKNPLSD 229 (684)
T ss_pred ccccceeeEcCCCCcEecchHHHHHHHHhhhccccccchHHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCCCCCCCCCCC
Confidence 99987764432211 1111
Q ss_pred ----------------cccccccCCCcHHHHHHHHHhHhhcC-CCCeEEEEEeeeeecCCCCC-CccccceEEEecceee
Q 047998 177 ----------------EEKLVVRPTSETIVNHMFTQWIHSYR-DLPLLVNQWANVTRWEMRTK-PFVRTLEFLWQEGHTA 238 (558)
Q Consensus 177 ----------------~e~l~LRPt~e~~i~~~~~~~i~s~r-dLPlkl~q~~~vfR~E~~~r-GllR~REF~q~d~h~~ 238 (558)
+...+|||+..++|+..|++-+..++ .||+-..|||+.||+|.+|| ||+|+|||+|.|++.|
T Consensus 230 ~~~FNLMF~T~IGp~~~~~~YLRPETAQGiFvnFk~l~~~~~~klPF~~AQIGk~FRNEIsPR~gl~R~REF~qaEiE~F 309 (684)
T PLN02734 230 PYPFNLMFQTSIGPSGLSVGYMRPETAQGIFVNFRDLYYYNGGKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHF 309 (684)
T ss_pred CeecccceeecccCcCCccceecccccchheeeHHHHHHhcCCCCCeeeeeccHhhhcccCcccceeeechhhhhhhhee
Confidence 12459999999999999999887555 79999999999999999988 9999999999999999
Q ss_pred eCChHHHH---------HH--------------------------------HHH-HHHHHHHHHHhhCCceE---EeecC
Q 047998 239 HATPEEAE---------KE--------------------------------AMQ-MIDIYTKFAYEHTAIPV---IAGRK 273 (558)
Q Consensus 239 ~~~~~~a~---------~e--------------------------------~~~-il~~y~~l~~~~l~ipv---~~g~k 273 (558)
++++.-. .+ ... .+.....|+.+ ++|+- ..-..
T Consensus 310 -v~P~~k~h~~f~~v~~~~l~l~~~~~q~~~~~~~~~t~~eAv~~gii~ne~l~Y~~~r~~~fl~~-iGi~~~~lRfRqh 387 (684)
T PLN02734 310 -VDPEDKSHPKFSEVADLEFLLFPREEQLGGQKAKPMRLGEAVSKGIVNNETLGYFIGRTYLFLTK-LGIDKERLRFRQH 387 (684)
T ss_pred -cCcccccccchhhhhhhhhhcccHhhhhccCCcccccHHHHHHcCccchHHHHHHHHHHHHHHHH-cCCCHHHeeeccc
Confidence 6665210 00 000 00000111111 33321 00000
Q ss_pred CchhhccCCCcceEEEEEEcCc-----------------------ccee-------------------------------
Q 047998 274 SKVETFAGASRTYTIEAMMGDK-----------------------RALQ------------------------------- 299 (558)
Q Consensus 274 ~~~ekf~Ga~~~~~ie~~~~dg-----------------------r~lq------------------------------- 299 (558)
...|.-.-|...|++|+..+.| ..+.
T Consensus 388 ~~~EmAHYA~dcwD~E~~~~~GWiE~vG~AdRs~yDL~~H~~~Sg~~L~~~~~~~ep~~~~~~~~~~~~~~~g~~fk~~~ 467 (684)
T PLN02734 388 LANEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLKAHSDKSKVPLVAHEKFAEPREVEVLVIVPNKKELGLAFKGDQ 467 (684)
T ss_pred CcHHHhhhhhccEeEEEecCCCcEEEEEeccccccchHHHHHhhCCCeEEEeccCCcceeeeEEEecchhhhhHHHHHHH
Confidence 0001111122223333222110 0000
Q ss_pred -----------------------e-cceE----ecCcccc---cccCeEEeC--CCCcee--eEeeeccchHHHHHHHHH
Q 047998 300 -----------------------A-GTSH----NLGQNFS---LAFGTQFTD--ENGQRQ--HVWQTSWAISTRFVGGII 344 (558)
Q Consensus 300 -----------------------~-gti~----~Lg~~~s---~~f~i~y~d--~~g~~~--~v~~~s~Gi~eRli~~li 344 (558)
. |.+- -+|.++. ..+.+.... ..|++. +|.-+||| ++|++++++
T Consensus 468 ~~v~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~iP~VIEPS~G-IgRIl~Ail 546 (684)
T PLN02734 468 KVVVEALEAMNEKEAMEMKAKLESKGEAEFYVCTLGKEVEIKKNMVSISKEKKKEHQRVFTPSVIEPSFG-IGRIIYCLF 546 (684)
T ss_pred HHHHHHHHhcchhHHHHHHHhhhhcCceeeeecccCcceeechhheeeeeeeeeecCceecCceEecCcc-HHHHHHHHH
Confidence 0 0000 0011110 000111100 112221 47789999 779999999
Q ss_pred HHhC-----CC--CCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHc
Q 047998 345 MTHG-----DD--TGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMK 417 (558)
Q Consensus 345 e~~~-----D~--~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~ 417 (558)
+++. |+ .|+.||+++||+||.|+|+..+ +...++|.+|++.|+++|++|.+|+++ .++|+|+++|+++
T Consensus 547 E~s~~~~~~De~R~~L~~Pp~IAP~qVaIlPL~~~----ee~~~~A~eLa~~LR~~GIrVelDd~~-~SIGKRyrrADei 621 (684)
T PLN02734 547 EHSFYTRPGDEQLNVFRFPPLVAPIKCTVFPLVQN----QQLNAVAKVISKELTAAGISHKIDITG-TSIGKRYARTDEL 621 (684)
T ss_pred HHHhccccCCCcceEEecCcccCCcEEEEEEecCC----hHHHHHHHHHHHHHHhCCCEEEEECCC-CCHhHHHHHHHHc
Confidence 9887 66 7999999999999999999754 237889999999999999999999997 5999999999999
Q ss_pred CCCEEEEeCceecCCCeEEEEEcCCCCccccccccccChHHHHHHHHHHHH
Q 047998 418 GIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLD 468 (558)
Q Consensus 418 GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~ll~ 468 (558)
|+|++|+||. +|+|+|++|++++|. .++++++++.|.++++
T Consensus 622 GIPf~ItIG~----dgtVTIRdRdsgeQ~------rV~ldeLv~~I~~li~ 662 (684)
T PLN02734 622 GVPFAVTVDS----DGSVTIRERDSKDQV------RVPVEEVASVVKDLTD 662 (684)
T ss_pred CCCEEEEECC----CCeEEEEECCCCceE------EeeHHHHHHHHHHHHc
Confidence 9999999996 899999999999887 7889998887766654
No 32
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=100.00 E-value=7.2e-40 Score=356.30 Aligned_cols=358 Identities=23% Similarity=0.314 Sum_probs=257.6
Q ss_pred HHHHHHhccccc-----cCCCCcceEeCchhHHHHHHHHHHHHHHH-HHcCCeeeecCccccHhhHhhhhcCccccCCce
Q 047998 92 YLDVISNAELAD-----YGPVRGTMVIRPYGYAIWEAIQDYLNVKF-KETGHSNMYFPQFIPYSFIEKEASHVEGFSPEL 165 (558)
Q Consensus 92 y~~~~~~a~l~d-----~~~vkG~~~~lP~g~~i~~~I~~~i~~~~-~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Em 165 (558)
..+++.+.|++- |+.++|+|||.|.|..+.++|.+.|++.| ...|+.+|.+|+|.|..+| +.|||++.|.+-|
T Consensus 6 ~~~l~~rrgf~~~s~eIYgG~~g~~dygP~G~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~~~v~-~aSGh~~~F~D~m 84 (551)
T TIGR00389 6 IMSLLKRRGFVFQSFEIYGGLAGFWDYGPLGAVLKNNIKNAWRKFFIKNERVLEIDTPIITPEEVL-KASGHVDNFTDWM 84 (551)
T ss_pred HHHHHHhcCCccccchhccCccceeccCcchHHHHHHHHHHHHHHHHhcCCceEeeccccCCHHHH-HhcCCccccCCce
Confidence 567788888874 34589999999999999999999999999 4778999999999999999 7899999999887
Q ss_pred EEEEec----------------------------------------CCccc------------------cccccccCCCc
Q 047998 166 ALVTIG----------------------------------------GGKEL------------------EEKLVVRPTSE 187 (558)
Q Consensus 166 y~~~~~----------------------------------------g~~~l------------------~e~l~LRPt~e 187 (558)
...+.+ |+.+| +...+|||+..
T Consensus 85 v~~~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~i~~~~i~~p~~g~~~~~~~~~FNLMF~t~iGp~~~~~~yLRPETA 164 (551)
T TIGR00389 85 VDCKSCKERFRADHLIEEKLGKRLWGFSGPELNEVMEKYDINCPNCGGENLTEVRSFNLMFQTEIGVVGKRKGYLRPETA 164 (551)
T ss_pred eecCCCCCEecchHHHHHHhhhhcccCCHHHHHHHHHHcCCCCCCCCCCCCCCccccccceeeccCCCCCcccccccccc
Confidence 654332 12112 13569999999
Q ss_pred HHHHHHHHHhHhhcC-CCCeEEEEEeeeeecCCCCC-CccccceEEEecceeeeCChHH-HHHHHHHHHHHH--------
Q 047998 188 TIVNHMFTQWIHSYR-DLPLLVNQWANVTRWEMRTK-PFVRTLEFLWQEGHTAHATPEE-AEKEAMQMIDIY-------- 256 (558)
Q Consensus 188 ~~i~~~~~~~i~s~r-dLPlkl~q~~~vfR~E~~~r-GllR~REF~q~d~h~~~~~~~~-a~~e~~~il~~y-------- 256 (558)
++|+..|++-+.+.+ .||+-+.|+|++||+|.+|| |++|+|||.|.|++.| +++++ ....+..+.+..
T Consensus 165 QGiFvnFk~l~~~~~~klPfgiaQiGk~fRNEIsPr~~l~R~REF~q~EiE~F-~~p~~~~~~~f~~~~~~~~~l~~~~~ 243 (551)
T TIGR00389 165 QGIFINFKRLLQFFRRKLPFGVAQIGKSFRNEISPRNGLFRVREFEQAEIEFF-VHPLDKSHPKFEEVKQDILPLLPRQM 243 (551)
T ss_pred hhhHHhHHHHHHhcCCCCCeeehhhhHhhhcccCcccceEEeehhhhchhhee-cCcccccchhhHHHHHHHHhhccchh
Confidence 999999999887555 89999999999999999987 9999999999999999 66641 111111111100
Q ss_pred --------------------------HHHHHhhCCceE---EeecCCchhhccCCCcceEEEEEEcCcc----ceeecce
Q 047998 257 --------------------------TKFAYEHTAIPV---IAGRKSKVETFAGASRTYTIEAMMGDKR----ALQAGTS 303 (558)
Q Consensus 257 --------------------------~~l~~~~l~ipv---~~g~k~~~ekf~Ga~~~~~ie~~~~dgr----~lq~gti 303 (558)
..++.+ ++|+- ..-...+.|.-.-|..+|++|..++.|= |+..-|.
T Consensus 244 ~~~~~~eav~~g~i~n~~~~y~~~~~~~fl~~-~Gi~~~~lrfrqh~~~e~AHYa~~~~D~e~~~~~Gw~E~~G~a~R~~ 322 (551)
T TIGR00389 244 QESGIGEAVESGMIENETLGYFIARVKQFLLE-IGINPDKLRFRQHDKNEMAHYAKDCWDFEFLTPYGWIECVGIADRGD 322 (551)
T ss_pred hhccHHHHHHhcccchHHHHHHHHHHHHHHHH-hCCCHHHeeecccCcHHHhhhccccEeEEEecCCCcEEEEEeccccc
Confidence 111111 34321 0000011122222445676665553320 0111122
Q ss_pred EecCc--ccccccCeEEeC-------------------------------------------------------------
Q 047998 304 HNLGQ--NFSLAFGTQFTD------------------------------------------------------------- 320 (558)
Q Consensus 304 ~~Lg~--~~s~~f~i~y~d------------------------------------------------------------- 320 (558)
+.|.+ ++|+. ++.|.+
T Consensus 323 yDL~~H~~~s~~-~l~~~~~~~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (551)
T TIGR00389 323 YDLTQHSKFSGK-SLSVFDKLDEPREVTKWEIEPNKKKFGPKFRKDAKKIESNLSEDDLEEREEELDKNEVELDKDLVEI 401 (551)
T ss_pred cChHHHHHhhCC-CeEEEeecCCCceeEEEEEecchhhhhhhhHhHHHHHHHhhcHHHHHHHHhhhhccceecchhhhhh
Confidence 22211 01100 111111
Q ss_pred ------CCCcee--eEeeeccchHHHHHHHHHHHhCCC--------CCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHH
Q 047998 321 ------ENGQRQ--HVWQTSWAISTRFVGGIIMTHGDD--------TGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAAL 384 (558)
Q Consensus 321 ------~~g~~~--~v~~~s~Gi~eRli~~lie~~~D~--------~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~ 384 (558)
..|++. +|..+|+| ++|++++|+++..+. .+|.||+++||+||+|+|+.++ +....+|.
T Consensus 402 ~~~~~~~~~~~~~P~VIepS~G-IdRIi~ALle~~~~e~~~~~~~r~vL~lp~~lAP~kV~VIpl~~~----~el~~~A~ 476 (551)
T TIGR00389 402 EMVTEVVHGEKYIPHVIEPSFG-IDRIIYALLEHSYQEEVLDGEEREVLRLPPHLAPIKVAVLPLVNK----EELKEIAK 476 (551)
T ss_pred eeeeeccCCcEecceEEEcccC-HHHHHHHHHHhhCccccccccccceeccCCccCCceEEEEEecCc----HHHHHHHH
Confidence 123332 47779999 799999999865551 2579999999999999999753 23678999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEcCCCCccccccccccChHHHHHHHH
Q 047998 385 SAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVK 464 (558)
Q Consensus 385 ~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~ 464 (558)
+|++.||++|++|++|+++ ++|+++++|++.|+|++|+||++++++|+|+|++|++++|. .+++++|.+.+.
T Consensus 477 eIa~~LR~~GI~VeiD~s~--sIGKq~rrADeiGiPf~IIIG~~EledgtVTIRdRdT~eQ~------~I~ldeL~~~L~ 548 (551)
T TIGR00389 477 EIFQALRKTGIRIKYDDSG--TIGKRYRRADEIGTPFCVTIDFETLEDETVTIRERDSMKQV------RVKIKELPSYIK 548 (551)
T ss_pred HHHHHHHHCCCEEEEECCC--CHHHHHHHHHHcCCCEEEEECCchhhCCEEEEEECCCCceE------EeeHHHHHHHHH
Confidence 9999999999999999975 59999999999999999999999999999999999999886 788888877776
Q ss_pred HH
Q 047998 465 DK 466 (558)
Q Consensus 465 ~l 466 (558)
++
T Consensus 549 e~ 550 (551)
T TIGR00389 549 KL 550 (551)
T ss_pred hh
Confidence 54
No 33
>PLN02530 histidine-tRNA ligase
Probab=100.00 E-value=3.6e-40 Score=360.63 Aligned_cols=325 Identities=18% Similarity=0.220 Sum_probs=255.6
Q ss_pred ccccCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccc
Q 047998 101 LADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKL 180 (558)
Q Consensus 101 l~d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l 180 (558)
+++.++++|++||+|.++.+++.|++.+++.|+++||++|.||+||+.++|.++.|. ...++||.|.|++|+ .+
T Consensus 67 ~~~~~~p~G~~D~lp~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~--~~~~~~y~f~D~~g~----~l 140 (487)
T PLN02530 67 KIDVNPPKGTRDFPPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGE--EITDQLYNFEDKGGR----RV 140 (487)
T ss_pred ccccCCCCCcCcCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCc--ccccceEEEECCCCC----EE
Confidence 566788999999999999999999999999999999999999999999999776663 367899999999875 89
Q ss_pred cccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHH
Q 047998 181 VVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKF 259 (558)
Q Consensus 181 ~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l 259 (558)
+|||+.|++++++++....+. ++|+|+||+|+|||+|++++| |+|||+|+++++||.+...||+|++.++ ++++.+
T Consensus 141 ~LRpD~T~~iaR~~~~~~~~~-~~P~r~~y~g~vfR~e~~q~g--r~REf~Q~giEiiG~~~~~aDaEvi~l~~~~l~~l 217 (487)
T PLN02530 141 ALRPELTPSLARLVLQKGKSL-SLPLKWFAIGQCWRYERMTRG--RRREHYQWNMDIIGVPGVEAEAELLAAIVTFFKRV 217 (487)
T ss_pred ecCCCCcHHHHHHHHhccccc-CCCeEEEEEcCEEcCcCCCCC--CccceEEcCeeEeCCCCcchhHHHHHHHHHHHHHc
Confidence 999999999999998865443 689999999999999999999 9999999999999999999999999987 788877
Q ss_pred HHh--hCCceEEeecC------------------------Cchhh-----------------------------------
Q 047998 260 AYE--HTAIPVIAGRK------------------------SKVET----------------------------------- 278 (558)
Q Consensus 260 ~~~--~l~ipv~~g~k------------------------~~~ek----------------------------------- 278 (558)
+.. .+.+. .+.. .+.++
T Consensus 218 gl~~~~~~i~--i~~~~i~~~~l~~~~~~~~~~~~v~~~~d~l~k~~~~~l~~~L~~~~~~~~~~~~l~~l~~~~~~~~l 295 (487)
T PLN02530 218 GITSSDVGIK--VSSRKVLQAVLKSYGIPEESFAPVCVIVDKLEKLPREEIEKELDTLGVSEEAIEGILDVLSLKSLDDL 295 (487)
T ss_pred CCCCCceEEE--EcCHHHHHHHHHHcCCchhhHHHHHHHHHhhhhccHHHHHHHHHHcCCCHHHHHHHHHHHhccCHHHH
Confidence 642 11111 1100 00000
Q ss_pred --ccC--------------------CCcceEEEEEEcCcccee--ecceEec----CcccccccCeEEeCC----CCcee
Q 047998 279 --FAG--------------------ASRTYTIEAMMGDKRALQ--AGTSHNL----GQNFSLAFGTQFTDE----NGQRQ 326 (558)
Q Consensus 279 --f~G--------------------a~~~~~ie~~~~dgr~lq--~gti~~L----g~~~s~~f~i~y~d~----~g~~~ 326 (558)
+.+ ....+.++..+ .|+++ .|++|+. |...+-.-|++|++. .|.
T Consensus 296 ~~~~~~~~~~l~~L~~l~~~l~~~g~~~~i~~Dl~l--vrgldYYTGivFe~~~~~~~~~~I~gGGRYD~Li~~fgg~-- 371 (487)
T PLN02530 296 EALLGADSEAVADLKQLFSLAEAYGYQDWLVFDASV--VRGLAYYTGIVFEGFDRAGKLRAICGGGRYDRLLSTFGGE-- 371 (487)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHcCCCccEEEeccc--ccCccccCceEEEEEecCCCcceeeecccHHHHHHHhCCC--
Confidence 000 00012222222 45655 4888863 223445668888763 233
Q ss_pred eEeeeccch-HHHHHHHHHHHhCCCCCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 047998 327 HVWQTSWAI-STRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQR 405 (558)
Q Consensus 327 ~v~~~s~Gi-~eRli~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~ 405 (558)
.++.++|++ ++|++.++. .. | .+|.|.+|.||+|++++++ ...+|.++++.||++|++|++|..+ .
T Consensus 372 ~~pAvGFa~g~~~l~~~l~-~~----g-~~p~~~~~~dVlVi~~~~~------~~~~A~~ia~~LR~~Gi~vevd~~~-~ 438 (487)
T PLN02530 372 DTPACGFGFGDAVIVELLK-EK----G-LLPELPHQVDDVVFALDED------LQGAAAGVASRLREKGRSVDLVLEP-K 438 (487)
T ss_pred CCCeeEEEEhHHHHHHHHH-hc----C-CCCCCCCCCcEEEEEcChH------HHHHHHHHHHHHHHCCCeEEEecCC-C
Confidence 345666666 777776553 32 4 4788889999999998754 5788999999999999999999987 5
Q ss_pred CHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEcCCCCccccccccccChHHH
Q 047998 406 TPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSIL 459 (558)
Q Consensus 406 slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el 459 (558)
++++++++|++.|+|++++||++|+++|+|+||++.++++. .++++++
T Consensus 439 ~l~k~ik~A~k~g~~~iviiG~~E~~~~~V~vK~l~sgeq~------~v~~~el 486 (487)
T PLN02530 439 KLKWVFKHAERIGAKRLVLVGASEWERGMVRVKDLSSGEQT------EVKLDEL 486 (487)
T ss_pred CHHHHHHHHHHCCCCEEEEEchhHHhCCeEEEEECCCCcce------EechHHc
Confidence 89999999999999999999999999999999999999886 6666653
No 34
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9e-40 Score=346.18 Aligned_cols=361 Identities=20% Similarity=0.253 Sum_probs=266.1
Q ss_pred HHHHHHhccccc-----cCCCCcceEeCchhHHHHHHHHHHHHHHH--HHcCCeeeecCccccHhhHhhhhcCccccCCc
Q 047998 92 YLDVISNAELAD-----YGPVRGTMVIRPYGYAIWEAIQDYLNVKF--KETGHSNMYFPQFIPYSFIEKEASHVEGFSPE 164 (558)
Q Consensus 92 y~~~~~~a~l~d-----~~~vkG~~~~lP~g~~i~~~I~~~i~~~~--~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~E 164 (558)
..+++.+-|++- |+.++|+|||.|.|..+.++|++.|++.| ..-++.++++|+|.+..+| +.|||++.|.+-
T Consensus 9 i~~l~krrgf~~~s~eiYgg~~g~~DyGPlG~~lk~ni~~~W~~~~v~~~~~~~~id~~il~~~~v~-~aSGH~~~F~Dp 87 (539)
T PRK14894 9 IVALAKRRGFIFPSSEIYGGLQGVYDYGPLGVELKNNIIADWWRTNVYERDDMEGLDAAILMNRLVW-KYSGHEETFNDP 87 (539)
T ss_pred HHHHHHhCCCCccCccccCCcccccCcCchhHHHHHHHHHHHHHHHeeccCCEEEeeccccCCHhHe-eeccCCCCCCCc
Confidence 345555566552 56789999999999999999999999998 4667889999999999999 889999999876
Q ss_pred eEEEEe----------------cCCccc--------------------cccccccCCCcHHHHHHHHHhHhhc-CCCCeE
Q 047998 165 LALVTI----------------GGGKEL--------------------EEKLVVRPTSETIVNHMFTQWIHSY-RDLPLL 207 (558)
Q Consensus 165 my~~~~----------------~g~~~l--------------------~e~l~LRPt~e~~i~~~~~~~i~s~-rdLPlk 207 (558)
|-.... +|+.+| +...+|||+...+|+..|++.+... +.||+-
T Consensus 88 mV~CkkCk~ryRaD~LiikCP~CGs~dLTe~~~FNLMF~T~iGp~~~~~~~~yLRPETAQGiFvnFk~ll~~~~~klPFg 167 (539)
T PRK14894 88 LVDCRDCKMRWRADHIQGVCPNCGSRDLTEPRPFNMMFRTQIGPVADSDSFAYLRPETAQGIFVNFANVLATSARKLPFG 167 (539)
T ss_pred eeECCCCCccccCccceeeCCCCCCcCCCcceeccccceeccccCCCcCcceeeCcccchHHHHHHHHHHHhcCCCCCee
Confidence 543322 222222 1358999999999999999988754 489999
Q ss_pred EEEEeeeeecCCCCC-CccccceEEEecceeeeCChHHHHHHHHHHHHHHHHHHHhhCCceE---EeecCCchhhccCCC
Q 047998 208 VNQWANVTRWEMRTK-PFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPV---IAGRKSKVETFAGAS 283 (558)
Q Consensus 208 l~q~~~vfR~E~~~r-GllR~REF~q~d~h~~~~~~~~a~~e~~~il~~y~~l~~~~l~ipv---~~g~k~~~ekf~Ga~ 283 (558)
+.|+|++||+|.+|| |++|+|||.|.|++.| +++.++.+.+.-.++.-..+..+ ++++- ......+.|.-.-+.
T Consensus 168 iaQIGk~FRNEIsPr~~l~R~REF~q~EiE~F-v~P~~~~~~~~y~~~~~~~fl~~-iGi~~~~lrfr~h~~~ElAHYa~ 245 (539)
T PRK14894 168 IAQVGKAFRNEINPRNFLFRVREFEQMEIEYF-VMPGTDEEWHQRWLEARLAWWEQ-IGIPRSRITIYDVPPDELAHYSK 245 (539)
T ss_pred EEeeeccccCccCCCCceeecccchhheEEEE-eCCCchHHHHHHHHHHHHHHHHH-hCCCHHHeeeeecCcHHhhhhhh
Confidence 999999999999987 9999999999999998 77776655544444433333333 45541 111111122222355
Q ss_pred cceEEEEEEcC-cc----ceeecceEecCc--cccc--------------ccCeEEeCC-CCcee--eEeeeccchHHHH
Q 047998 284 RTYTIEAMMGD-KR----ALQAGTSHNLGQ--NFSL--------------AFGTQFTDE-NGQRQ--HVWQTSWAISTRF 339 (558)
Q Consensus 284 ~~~~ie~~~~d-gr----~lq~gti~~Lg~--~~s~--------------~f~i~y~d~-~g~~~--~v~~~s~Gi~eRl 339 (558)
.+|.+|..+++ |- |+..-|-|.|+. +.++ ..++.|.++ .|++. +|.-+|+| ++|+
T Consensus 246 ~~~D~e~~~p~~Gw~E~~Gia~RtdyDL~~H~~~s~~~~l~~~~~~~~~s~~~l~~~~~~~~~~~iP~ViEpS~G-~dR~ 324 (539)
T PRK14894 246 RTFDLMYDYPNIGVQEIEGIANRTDYDLGSHSKDQEQLNLTARVNPNEDSTARLTYFDQASGRHVVPYVIEPSAG-VGRC 324 (539)
T ss_pred ccEEEEEECCCCCeEEEEEeecccccCHHHHhhhcccCCceeeeccccCCCceEEEEeccCCcccCCceeecCcc-hhHH
Confidence 67888876653 21 111123333332 1111 223455443 23321 57789999 9999
Q ss_pred HHHHHHHhCC----------------------------------------------------------------------
Q 047998 340 VGGIIMTHGD---------------------------------------------------------------------- 349 (558)
Q Consensus 340 i~~lie~~~D---------------------------------------------------------------------- 349 (558)
+.+++++...
T Consensus 325 ~~a~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (539)
T PRK14894 325 MLAVMCEGYAEELTKAIPGEKLAAVGDALEAFLKSVGRSEKLAGEARDAILARGEALLQALPERLPEVEQLLAMPGADQI 404 (539)
T ss_pred HHHHHHHHHhhhhhcccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9888764321
Q ss_pred ---------------C--CC-CCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCc-EEEEeCCCCCCHHHH
Q 047998 350 ---------------D--TG-LMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGI-RVKLDDSDQRTPGWK 410 (558)
Q Consensus 350 ---------------~--~G-l~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Gi-rv~vD~r~~~slgkk 410 (558)
+ +| +.||+|+||+||.|+|+.++. .++.++|.+|++.|+++|+ +|.+|++ + ++|+|
T Consensus 405 ~~~~~~~~~~~~~~~E~~rgvLplp~wLAPvQVaVLPLs~~~---~~l~eyAkeI~~~L~~~Gi~rv~~Dds-e-sIGKK 479 (539)
T PRK14894 405 ELGKKLRGQAQPLIDEHYRTVLRLKPRLAPIKVAVFPLKRNH---EGLVATAKAVRRQLQVGGRMRTVYDDT-G-AIGKL 479 (539)
T ss_pred ccccccccccccCCCcccceecCCCcCCCCceEEEEeccccc---cchHHHHHHHHHHHHHCCCceEEEcCC-C-CHhHH
Confidence 1 23 346699999999999998642 1367999999999999998 9999994 3 99999
Q ss_pred HHHHHHcCCCEEEEe-------CceecCCCeEEEEEcCCCCccccccccccChHHHHHHHHHHH
Q 047998 411 FNFWEMKGIPLRIEI-------GPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKL 467 (558)
Q Consensus 411 ~~~ae~~GiP~~IiI-------G~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~ll 467 (558)
+++++..|+||+|+| |++|+++|+|+||+|++++|. .++++++++.|.+.+
T Consensus 480 yRraDeiGiPy~ITVD~~Tl~dGdkE~e~gTVTVR~RDs~eQ~------rV~ideli~~L~~~~ 537 (539)
T PRK14894 480 YRRQDEIGTPFCITVDFDTIGQGKDPALAGTVTVRDRDTMAQE------RVPISELEAYLRDRV 537 (539)
T ss_pred HHhhhccCCCEEEEEeccccccccchhhcCeEEEEEeCCCeEE------EEEHHHHHHHHHHHh
Confidence 999999999999999 999999999999999999887 899999998887765
No 35
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.3e-41 Score=362.18 Aligned_cols=268 Identities=20% Similarity=0.285 Sum_probs=226.4
Q ss_pred CCCcchHHHHHHHHHhccccccCCCCcceEeCchhHHHHHHHHHHHHHH-HHHcCCeeeecCccccHhhHhhhhcCcccc
Q 047998 83 PRSQDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVK-FKETGHSNMYFPQFIPYSFIEKEASHVEGF 161 (558)
Q Consensus 83 ~~~~~~~~wy~~~~~~a~l~d~~~vkG~~~~lP~g~~i~~~I~~~i~~~-~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f 161 (558)
+++.+|.+||.++++++|++|..+.+|++.|+|.|+++++.|++++++. ++++||+++.||.|++.++|.+ +||+++|
T Consensus 188 ~~~~~F~~~h~el~~~~glldk~~G~G~~~~~p~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~k-sGhl~~F 266 (517)
T PRK00960 188 KREITFDGDPTEEAEKLGWVKRFPGRGQWFYTPPMTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYK-MRYLEGL 266 (517)
T ss_pred CCCCCCCCCHHHHHHHCCCccccCCCceEEEEChHHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhh-cCCccCC
Confidence 5578999999999999999999899999999999999999999999876 6888999999999999999955 7999999
Q ss_pred CCceEEEEecCC------------------------ccc-cccccccCCCcHHHHHHHHHhHhhcCCCCeEEEE-Eeeee
Q 047998 162 SPELALVTIGGG------------------------KEL-EEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQ-WANVT 215 (558)
Q Consensus 162 ~~Emy~~~~~g~------------------------~~l-~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q-~~~vf 215 (558)
.++||++++.++ .+| ++.++|||++|++++.+|++++.||++||+|+++ +|+||
T Consensus 267 ~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl~~~~~~L~~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cF 346 (517)
T PRK00960 267 PEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPIEKLKEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTY 346 (517)
T ss_pred hhhceEeeccccccccccchhhhccccccccccccccccccccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCce
Confidence 999999974221 011 3467999999999999999999999999999999 78999
Q ss_pred ecCCC-CCCccccceEEEecceeeeCChHHHHHHHHHHHHHHHHHHHhhCCceE-E---------eecCCch-h-hccCC
Q 047998 216 RWEMR-TKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPV-I---------AGRKSKV-E-TFAGA 282 (558)
Q Consensus 216 R~E~~-~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il~~y~~l~~~~l~ipv-~---------~g~k~~~-e-kf~Ga 282 (558)
|||.. ++||+|+|||+|.|+|+| ++++++.+++..+++....++.. |++|+ + .|.+... + .|.+
T Consensus 347 R~EsGs~~GL~RV~eF~kvE~h~f-~tpEqs~ee~e~ll~~~e~i~~~-LgLp~~r~v~~DPFf~~~~k~~~~d~~f~~- 423 (517)
T PRK00960 347 RWEGGGAHGLERVNEFHRIEIVWL-GTPEQVEEIRDELLKYAHILAEK-LDLEYWREVGDDPFYLEGRGLEDRGIEFPD- 423 (517)
T ss_pred eCCCCCCCCCcccceeEEEEEEEE-eCHHHHHHHHHHHHHHHHHHHHH-cCCCceEEecccccccccCccccccccCcc-
Confidence 99976 889999999999999975 99999999999999666666554 88993 2 2222222 3 4665
Q ss_pred CcceEEEEEEc----Ccc--ceeecceEecCcccccccCeEEeCCCCceeeEeeeccch-HHHHHHHHHHHhCCCCCCCC
Q 047998 283 SRTYTIEAMMG----DKR--ALQAGTSHNLGQNFSLAFGTQFTDENGQRQHVWQTSWAI-STRFVGGIIMTHGDDTGLML 355 (558)
Q Consensus 283 ~~~~~ie~~~~----dgr--~lq~gti~~Lg~~~s~~f~i~y~d~~g~~~~v~~~s~Gi-~eRli~~lie~~~D~~Gl~l 355 (558)
..+|.+|++|| +|+ .++.++.| |++|+++|+|+|. +|+ ++|++|+|+ ++|++++|+++||.|.| .|
T Consensus 424 ~~tydiE~wmP~~~~~gk~~ev~S~S~h--gd~farrfnIk~~--~g~--~~hTnctG~g~eR~l~AlLe~hG~d~~-~w 496 (517)
T PRK00960 424 VPKYEMELWLPYRGDERKWVAVTSANVH--GTHFVEGFNIKDY--KGR--KLWTGCTGYGLERWVIGFLAQKGFDPE-NW 496 (517)
T ss_pred ccceeEEEEecCccCCCCEEEEEeeeec--cchhhHhhCcccC--CCC--eEeecceeeHHHHHHHHHHHhcCCCCC-cC
Confidence 78899999998 566 45555555 9999999999873 343 588999999 79999999999998888 89
Q ss_pred CCCCCC
Q 047998 356 PPRIAP 361 (558)
Q Consensus 356 P~~lAP 361 (558)
|..+.+
T Consensus 497 Pe~~r~ 502 (517)
T PRK00960 497 PEEIRK 502 (517)
T ss_pred CHHHHH
Confidence 976544
No 36
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9e-38 Score=335.93 Aligned_cols=330 Identities=21% Similarity=0.282 Sum_probs=251.2
Q ss_pred cccCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCc-cccCCceEEEEecCCccccccc
Q 047998 102 ADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHV-EGFSPELALVTIGGGKELEEKL 180 (558)
Q Consensus 102 ~d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~-~~f~~Emy~~~~~g~~~l~e~l 180 (558)
..++.++|+++|+|.++.+++.|++.+++.|+++||++|.||+|++.++|.+.+|++ +.+.++||.|.|.+|+ .+
T Consensus 2 ~~~~~p~G~~d~~p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~----~l 77 (412)
T PRK00037 2 MKIQAPRGTRDILPEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDKGGR----SL 77 (412)
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcCCCC----EE
Confidence 345679999999999999999999999999999999999999999999997666765 3457899999998764 89
Q ss_pred cccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHH
Q 047998 181 VVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKF 259 (558)
Q Consensus 181 ~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l 259 (558)
+|||+.|+++++++++.. .+|+|+||+|+|||+|+++.| |.|||+|.|+|+||.+...+++|++.++ ++++.+
T Consensus 78 ~LRpd~T~~~ar~~~~~~----~~p~r~~~~g~vfR~e~~~~g--r~ref~Q~g~ei~g~~~~~~d~E~i~~~~~~l~~l 151 (412)
T PRK00037 78 TLRPEGTAPVVRAVIEHK----LQPFKLYYIGPMFRYERPQKG--RYRQFHQFGVEVIGSDSPLADAEVIALAADILKAL 151 (412)
T ss_pred EecCCCcHHHHHHHHhCC----CCCeEEEEEcCccccCCCCCC--cccceEEcCeeeeCCCCcchhHHHHHHHHHHHHHc
Confidence 999999999999887642 299999999999999999889 9999999999999988888999998877 777777
Q ss_pred HHhhCCceE--------Eeec---------C--Cc--------h--------h-------hcc-CCCc------------
Q 047998 260 AYEHTAIPV--------IAGR---------K--SK--------V--------E-------TFA-GASR------------ 284 (558)
Q Consensus 260 ~~~~l~ipv--------~~g~---------k--~~--------~--------e-------kf~-Ga~~------------ 284 (558)
+.....+.+ ..+. + +. . + ... .+..
T Consensus 152 g~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (412)
T PRK00037 152 GLKGLKLLINSLGDFEIRANYRKALVGFLEKGLDELDEDSKRRLETNPLRILDKKDKEDQELLKDAPKLLDYLDEESKEH 231 (412)
T ss_pred CCCceeeeeccCCCHHHhHHHHHHHHHHHHhCchhhchHHHHHHhhCchhhhcccchhhHHHHhcchHHHHHhhHHHHHH
Confidence 643211100 0000 0 00 0 0 000 0000
Q ss_pred ---------ceEEEEEE--cCcccee--ecceEec-----CcccccccCeEEeCC----CCceeeEeeeccch-HHHHHH
Q 047998 285 ---------TYTIEAMM--GDKRALQ--AGTSHNL-----GQNFSLAFGTQFTDE----NGQRQHVWQTSWAI-STRFVG 341 (558)
Q Consensus 285 ---------~~~ie~~~--~dgr~lq--~gti~~L-----g~~~s~~f~i~y~d~----~g~~~~v~~~s~Gi-~eRli~ 341 (558)
.+.+.+.+ .-.|+++ .|.+|+. |..-+-+-|++|++. +|. ..+.++|++ ++|++.
T Consensus 232 l~~l~~~l~~~~~~i~~Dl~~~r~l~YYtG~vFe~~~~~~g~~~~i~~GGRYD~L~~~f~~~--~~pavGfs~~le~l~~ 309 (412)
T PRK00037 232 FEELKELLDALGIPYVIDPRLVRGLDYYTGTVFEFVTDDLGAQGTVCGGGRYDGLVEQFGGP--PTPAVGFAIGVERLLL 309 (412)
T ss_pred HHHHHHHHHHcCCCEEECCCcccChhhccceEEEEEECCCCccceeeeccchhHHHHHhCCC--CCceEEEEEcHHHHHH
Confidence 00011111 1134444 4777743 211244557788763 223 334456666 999998
Q ss_pred HHHHHhCCCCCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCE
Q 047998 342 GIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPL 421 (558)
Q Consensus 342 ~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~ 421 (558)
+|.+.. . +|.||+|+|++.+ ...++.++++.||++|++|++|..+ .++++++++|++.|+|+
T Consensus 310 ~l~~~~-----~------~~~~vlI~~~~~~------~~~~a~~i~~~Lr~~Gi~v~i~~~~-~~~~~~~~~a~~~gi~~ 371 (412)
T PRK00037 310 LLEELG-----E------EPVDVYVVPLGED------AELAALKLAEKLRAAGIRVELDYGG-RKLKKQFKYADKSGARF 371 (412)
T ss_pred HHHhcC-----C------CCCCEEEEEeChH------HHHHHHHHHHHHHHCCCeEEEeCCC-CCHHHHHHHHHHcCCCE
Confidence 887642 1 7899999998743 4678999999999999999999876 58999999999999999
Q ss_pred EEEeCceecCCCeEEEEEcCCCCccccccccccChHHHHHHHHHHH
Q 047998 422 RIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKL 467 (558)
Q Consensus 422 ~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~ll 467 (558)
+|+||++|+++|+|+|++|+++++. .++++++++.|++++
T Consensus 372 ~viig~~e~~~~~v~vr~~~~~~~~------~v~~~el~~~i~~~~ 411 (412)
T PRK00037 372 VLILGEDELANGTVTVKDLRTGEQQ------TVPLDELVEALKELL 411 (412)
T ss_pred EEEEChhHHhCCeEEEEECCCCceE------EeeHHHHHHHHHHhh
Confidence 9999999999999999999998876 788999988887654
No 37
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-37 Score=325.73 Aligned_cols=365 Identities=22% Similarity=0.304 Sum_probs=262.4
Q ss_pred HHHHHHHHhccccc-----cCCCCcceEeCchhHHHHHHHHHHHHHHHHH--cCCeeeecCccccHhhHhhhhcCccccC
Q 047998 90 AWYLDVISNAELAD-----YGPVRGTMVIRPYGYAIWEAIQDYLNVKFKE--TGHSNMYFPQFIPYSFIEKEASHVEGFS 162 (558)
Q Consensus 90 ~wy~~~~~~a~l~d-----~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~--~G~~ei~tP~l~~~~l~~k~sgh~~~f~ 162 (558)
+-..+++.+-|++= |+.++|+|||.|.|..+.++|.+.|++.|-. -|+.+|+||++.|.++| +.|||+++|.
T Consensus 7 e~i~~l~KrRGF~~~s~EIYGG~~GfyDYGPlG~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~V~-kASGHvd~Fs 85 (558)
T COG0423 7 EKIVELAKRRGFVFPSSEIYGGLAGFYDYGPLGVELKNNIKEAWRKSFVTEREDVVEIDTPIILPEEVW-KASGHVDKFS 85 (558)
T ss_pred HHHHHHHHhcccccccceeecCcccccccCCccHHHHHHHHHHHHHHHeeccCCeEEecccccCcHHHh-hhcCcccccc
Confidence 34667777777762 4578999999999999999999999999943 68999999999999999 8899999999
Q ss_pred CceEEEEecC----------------------------------------Cccc------------------cccccccC
Q 047998 163 PELALVTIGG----------------------------------------GKEL------------------EEKLVVRP 184 (558)
Q Consensus 163 ~Emy~~~~~g----------------------------------------~~~l------------------~e~l~LRP 184 (558)
+-|-..+.+| |.+| +...+|||
T Consensus 86 Dplv~c~~c~~~yRADHLiEe~l~~~~~~~~~~~e~~~ii~~~~ir~p~~g~~l~~v~~FNLMF~T~IGp~~~~~~YLRP 165 (558)
T COG0423 86 DPLVECKKCGERYRADHLIEEYLGKDGHGNMSPEELTEIIREYDIRCPECGGELNEVREFNLMFKTTIGPVEDSLGYLRP 165 (558)
T ss_pred cceeeccccchhhhhhHHHHHHhhhcccccCCHHHHHHHHHHcCCcCCCcCCccCCcceeeeEEEeeecCCCCcceeecc
Confidence 8876554332 0011 13569999
Q ss_pred CCcHHHHHHHHHhHhhcC-CCCeEEEEEeeeeecCCCCC-CccccceEEEecceeeeCChHH------------------
Q 047998 185 TSETIVNHMFTQWIHSYR-DLPLLVNQWANVTRWEMRTK-PFVRTLEFLWQEGHTAHATPEE------------------ 244 (558)
Q Consensus 185 t~e~~i~~~~~~~i~s~r-dLPlkl~q~~~vfR~E~~~r-GllR~REF~q~d~h~~~~~~~~------------------ 244 (558)
+..++|...|++-.++.| .||+-+.|||+.||+|.+|+ |++|+|||+|.|++.| +++++
T Consensus 166 ETAQGiFvnFk~l~~~~r~klPFgiaQIGKsfRNEISPr~gl~R~REF~QaEiE~F-v~P~~k~~p~f~~v~~~~l~l~~ 244 (558)
T COG0423 166 ETAQGIFVNFKNLLEFARNKLPFGIAQIGKSFRNEISPRNGLFRTREFEQAEIEFF-VDPEEKEHPKFNEVKDEKLPLLP 244 (558)
T ss_pred cccchhhhhhHHHHHHhccCCCeEEEeechhhccccCcccceeehhhhhhhheeeE-ECCCcccCcchhhhhhhhccccc
Confidence 999999999999887544 79999999999999999988 9999999999999999 55544
Q ss_pred -H-HHH----------HHH---H--HHHHHHHHHhhCCceEEe---ecCCchhhccCCCcceEEEEEEcCccceee----
Q 047998 245 -A-EKE----------AMQ---M--IDIYTKFAYEHTAIPVIA---GRKSKVETFAGASRTYTIEAMMGDKRALQA---- 300 (558)
Q Consensus 245 -a-~~e----------~~~---i--l~~y~~l~~~~l~ipv~~---g~k~~~ekf~Ga~~~~~ie~~~~dgr~lq~---- 300 (558)
. ..+ +.. + .......+...++|+--. -...+.|.-.-|..+|.+|+.++-+--+++
T Consensus 245 ~~~q~~~~~~EAv~~g~~~n~~~~y~~~~~~~fl~~lGI~~e~lRfrqh~~~E~AHYa~~twD~E~~~~~~gWiE~~GiA 324 (558)
T COG0423 245 REAQEEGTEEEAVEEGIVENETLAYFIARTKFFLEDLGIDPEKLRFRQHLPEELAHYSKDTWDAEYKFPFGGWIELVGIA 324 (558)
T ss_pred HHHhhhhhhhhhhhcceeechhHHHHHHHHHHHHHHcCCCHHHhhhhhcChHHHhhhhhcceeEEEecCCCceEEEEEee
Confidence 2 122 111 1 111112222235554210 001111222223445655544321100010
Q ss_pred -cceEecCc--c-----------cc---------cccCeEEeC-------------------------------------
Q 047998 301 -GTSHNLGQ--N-----------FS---------LAFGTQFTD------------------------------------- 320 (558)
Q Consensus 301 -gti~~Lg~--~-----------~s---------~~f~i~y~d------------------------------------- 320 (558)
-|-+.|.. + |+ ..-+.+|.+
T Consensus 325 dRtdYDL~~H~k~s~~~l~v~~~~~ePk~v~~~~~~~~~~~~gp~~k~~a~~v~~~~se~~~~~~~~~~~~~~~~~~~i~ 404 (558)
T COG0423 325 DRTDYDLSRHSKFSGEDLTVFREYDEPKEVERWHSKVDLKFLGPEFKKDAKKVAEALSELEELEKELNGYEVSKDLVIIE 404 (558)
T ss_pred cccccchhhhhhhccccceeeeccCCcceeeeeecccchhhcChhhhhhHHHHhhhhhhhhhhhhccCccccccchhhee
Confidence 01111110 0 00 000111111
Q ss_pred ----CCCcee--eEeeeccchHHHHHHHHHHHhCCCC-------CCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHH
Q 047998 321 ----ENGQRQ--HVWQTSWAISTRFVGGIIMTHGDDT-------GLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAK 387 (558)
Q Consensus 321 ----~~g~~~--~v~~~s~Gi~eRli~~lie~~~D~~-------Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~ 387 (558)
..|++. +|.-+||| ++|++.+++++..+.. -|.|||++||++|+|+|+.+++ ++.+.|.+|.
T Consensus 405 ~~~~~~~e~~iP~VIEPSfG-idRi~y~~l~~ay~~ee~~e~R~vLrl~p~lAPikvaVlPL~~k~----~l~~~a~~i~ 479 (558)
T COG0423 405 EVEKVTGEKYIPHVIEPSFG-IDRIFYALLEHAYTEEEVEEKRIVLRLPPDLAPIKVAVLPLVKKD----ELVEIAKEIF 479 (558)
T ss_pred eeeeccCceecCceeccCCC-chHHHHHHHHHhhcccccccceeEEecCcccCceEEEEEeeeccc----chhHHHHHHH
Confidence 112222 47789999 9999999987554322 2579999999999999998764 3789999999
Q ss_pred HHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEcCCCCccccccccccChHHHHHHHHHHH
Q 047998 388 EVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKL 467 (558)
Q Consensus 388 ~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~ll 467 (558)
+.|++.|+.|.+|+++ ++|++++.+|.+|+||+|.|..+.+++++||||+|||.+|. .|++++|+..+.+++
T Consensus 480 ~~L~~~~~~v~yDdsG--sIGrRYrR~DEIGtPfcVTvD~eTleD~tVTiReRDs~~Qv------Rv~i~el~~~l~~~~ 551 (558)
T COG0423 480 EKLRELGFNVDYDDSG--SIGRRYRRQDEIGTPFCVTVDFETLEDNTVTIRERDSMEQV------RVKIEELADYLRELI 551 (558)
T ss_pred HHHHhcCceEEecCCC--cHhhhhhhccccCCceEEEecCCcccCCcEEEeecCchhee------eeeHHHHHHHHHHHh
Confidence 9999999999999985 89999999999999999999999999999999999999886 899999999998877
Q ss_pred HH
Q 047998 468 DE 469 (558)
Q Consensus 468 ~~ 469 (558)
..
T Consensus 552 ~~ 553 (558)
T COG0423 552 KG 553 (558)
T ss_pred cc
Confidence 53
No 38
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.9e-36 Score=323.45 Aligned_cols=324 Identities=18% Similarity=0.231 Sum_probs=247.4
Q ss_pred cccCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCcccccccc
Q 047998 102 ADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLV 181 (558)
Q Consensus 102 ~d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~ 181 (558)
.+.++++|++||+|..+.+++.|++.+++.|+++||++|.||+|++.++|....+..+...++||.|+|.+|+ .++
T Consensus 2 ~~~~~p~G~~d~~p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~g~----~l~ 77 (423)
T PRK12420 2 MEMRNVKGTKDYLPEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQGKR----DLA 77 (423)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCCCc----eec
Confidence 3557899999999999999999999999999999999999999999999965445445667899999999885 899
Q ss_pred ccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHHH
Q 047998 182 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKFA 260 (558)
Q Consensus 182 LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l~ 260 (558)
|||+.|++++++++... ...+|+|+||+|+|||+|.+++| |.|||+|+++++||.+...||+|++.++ ++++.++
T Consensus 78 LRpD~T~~iaR~va~~~--~~~~p~r~~y~g~vfR~~~~~~g--r~rE~~Q~g~EiiG~~~~~adaEvi~la~~~l~~lg 153 (423)
T PRK12420 78 LRYDLTIPFAKVVAMNP--NIRLPFKRYEIGKVFRDGPIKQG--RFREFIQCDVDIVGVESVMAEAELMSMAFELFRRLN 153 (423)
T ss_pred ccccccHHHHHHHHhCc--CCCCCeeEEEEcceECCCCCCCC--ccceeEECCeeeECCCCCcccHHHHHHHHHHHHHCC
Confidence 99999999999988752 34689999999999999999999 9999999999999999999999999987 7888775
Q ss_pred Hhh----------------CCceE------E----eecCCchh--------------------hcc--CC----------
Q 047998 261 YEH----------------TAIPV------I----AGRKSKVE--------------------TFA--GA---------- 282 (558)
Q Consensus 261 ~~~----------------l~ipv------~----~g~k~~~e--------------------kf~--Ga---------- 282 (558)
.++ +++|- . .-++...+ .+. |.
T Consensus 154 ~~~~i~l~~~~l~~~il~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~l~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~ 233 (423)
T PRK12420 154 LEVTIQYNNRKLLNGILQAIGIPTELTSDVILSLDKIEKIGIDGVRKDLLERGISEEMADTICNTVLSCLQLSIADFKEA 233 (423)
T ss_pred CCEEEEEcCHHHHHHHHHHcCCChhhhhchhhheechhhcCHHHHHHHHHHcCCCHHHHHHHHHHHhccChhhHHHHHHh
Confidence 431 12221 0 00000000 000 00
Q ss_pred -------------------------CcceEEEEEEcCcccee--ecceEec---C--cccccccCeEEeCC----CCcee
Q 047998 283 -------------------------SRTYTIEAMMGDKRALQ--AGTSHNL---G--QNFSLAFGTQFTDE----NGQRQ 326 (558)
Q Consensus 283 -------------------------~~~~~ie~~~~dgr~lq--~gti~~L---g--~~~s~~f~i~y~d~----~g~~~ 326 (558)
.....++..+ .|+++ .|.+|+. + ...+-+-|++|++. .|...
T Consensus 234 ~~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~Dl~~--vr~l~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~f~~~~~ 311 (423)
T PRK12420 234 FNNPLVAEGVNELQQLQQYLIALGINENCIFNPFL--ARGLTMYTGTVYEIFLKDGSITSSIGSGGRYDNIIGAFRGDDM 311 (423)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhCCCCcEEEeccc--cCCCcccceeEEEEEecCCCccccccCCccHHHHHHHhCCCCC
Confidence 0001222222 45554 4778754 1 12345668899762 13212
Q ss_pred eEeeeccch-HHHHHHHHHHHhCCCCCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhh-CCcEEEEeCCCC
Q 047998 327 HVWQTSWAI-STRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQK-SGIRVKLDDSDQ 404 (558)
Q Consensus 327 ~v~~~s~Gi-~eRli~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~-~Girv~vD~r~~ 404 (558)
.++.++|++ ++|++.++... + . ++ .|.||+|+|++.. ..+.++++.||+ +|++|++|.++
T Consensus 312 ~~pAvGfa~~~~~l~~~l~~~-----~-~-~~--~~~dvlI~~~~~~--------~~a~~ia~~Lr~~~Gi~ve~~~~~- 373 (423)
T PRK12420 312 NYPTVGISFGLDVIYTALSQK-----E-T-IS--STADVFIIPLGTE--------LQCLQIAQQLRSTTGLKVELELAG- 373 (423)
T ss_pred CCCceeEEEcHHHHHHHHHhc-----C-C-CC--CCceEEEEEcCCH--------HHHHHHHHHHHhhcCCeEEEecCC-
Confidence 345677777 99999876532 2 1 22 4789999997532 358899999999 99999999998
Q ss_pred CCHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEcCCCCccccccccccChHHH
Q 047998 405 RTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSIL 459 (558)
Q Consensus 405 ~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el 459 (558)
.++++++++|.+.|+|++++||++|+++|+|+|+++.++++. .|++++|
T Consensus 374 ~~l~~~i~~A~~~g~~~iviig~~e~~~~~v~vr~~~~~~~~------~v~~~~~ 422 (423)
T PRK12420 374 RKLKKALNYANKENIPYVLIIGEEEVSTGTVMLRNMKEGSEV------KVPLSSL 422 (423)
T ss_pred cCHHHHHHHHHHcCCCEEEEEChhHHhcCeEEEEECCCCcee------eeeHHHc
Confidence 599999999999999999999999999999999999998776 6777664
No 39
>PLN02972 Histidyl-tRNA synthetase
Probab=100.00 E-value=1.1e-35 Score=331.76 Aligned_cols=331 Identities=17% Similarity=0.168 Sum_probs=249.5
Q ss_pred cCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCcccccccccc
Q 047998 104 YGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVR 183 (558)
Q Consensus 104 ~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LR 183 (558)
.+.++|++||+|..+.+|++|++.+++.|+++||++|.||+|++.++|....|.- .++||.|.|.+|+ .++||
T Consensus 327 ~k~PkGtrD~lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged---~k~mY~f~D~gGr----~LaLR 399 (763)
T PLN02972 327 PKIPKGTRDFAKEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGED---SKLIYDLADQGGE----LCSLR 399 (763)
T ss_pred cCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcc---hhheEEEECCCCC----EEEeC
Confidence 4679999999999999999999999999999999999999999999997655532 3689999999885 89999
Q ss_pred CCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeC-ChHHHHHHHHHHH-HHHHHHHH
Q 047998 184 PTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHA-TPEEAEKEAMQMI-DIYTKFAY 261 (558)
Q Consensus 184 Pt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~-~~~~a~~e~~~il-~~y~~l~~ 261 (558)
|+.|++++++++.. ...|+|+||+|+|||+|+|++| |+|||+|++++++|. ++..+|+|++.++ ++++.++.
T Consensus 400 PDlTvPiAR~vA~n----~~~p~KrYyiG~VFR~e~pqkG--R~REF~Q~G~EIIG~~~~~~aDAEVI~La~E~L~~LGi 473 (763)
T PLN02972 400 YDLTVPFARYVAMN----GITSFKRYQIAKVYRRDNPSKG--RYREFYQCDFDIAGVYEPMGPDFEIIKVLTELLDELDI 473 (763)
T ss_pred CCChHHHHHHHHhC----CCCcceEEEeccEEecCCCCCC--CCccceEEeEEEEcCCCcchhhHHHHHHHHHHHHhCCC
Confidence 99999999988764 2349999999999999999999 999999999999997 5667899999987 78887754
Q ss_pred hh-----------------CCceE------E----eecCCch------------------h---h---ccCCC-------
Q 047998 262 EH-----------------TAIPV------I----AGRKSKV------------------E---T---FAGAS------- 283 (558)
Q Consensus 262 ~~-----------------l~ipv------~----~g~k~~~------------------e---k---f~Ga~------- 283 (558)
.. +++|- . ..++..+ + . +.|..
T Consensus 474 ~df~I~INh~~iL~~ILe~lgi~~e~~~~v~~aIdkldk~~le~vk~eL~~~~gLs~e~~~~L~~L~~L~G~~~evLd~L 553 (763)
T PLN02972 474 GTYEVKLNHRKLLDGMLEICGVPPEKFRTICSSIDKLDKQSFEQVKKEMVEEKGLSNETADKIGNFVKERGPPLELLSKL 553 (763)
T ss_pred CceEEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 21 11210 0 0000000 0 0 01110
Q ss_pred ---------------------------------cceEEEEEEcCcccee--ecceEec---Ccc-cccccCeEEeCC---
Q 047998 284 ---------------------------------RTYTIEAMMGDKRALQ--AGTSHNL---GQN-FSLAFGTQFTDE--- 321 (558)
Q Consensus 284 ---------------------------------~~~~ie~~~~dgr~lq--~gti~~L---g~~-~s~~f~i~y~d~--- 321 (558)
..+.++..+ .|+++ .|++|+. +.. -+-+-|++|++.
T Consensus 554 ~~~~~~l~~~~~~~~aL~eL~~L~~~L~~~gv~~~I~fDlsL--vRGLDYYTGiVFE~~~~g~~~gsIagGGRYD~Lv~~ 631 (763)
T PLN02972 554 RQEGSEFLGNASSRAALDELEIMFKALEKSKAIGKIVFDLSL--ARGLDYYTGVIYEAVFKGAQVGSIAAGGRYDNLVGM 631 (763)
T ss_pred HHhhHhhccChHHHHHHHHHHHHHHHHHhcCCCccEEECCcc--cCCCcccCceEEEEEEcCCccceeeecCCchhHHHh
Confidence 001122212 46665 4888864 212 245678899773
Q ss_pred -CCceeeEeeeccch-HHHHHHHHHHHhCCCCCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEE
Q 047998 322 -NGQRQHVWQTSWAI-STRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKL 399 (558)
Q Consensus 322 -~g~~~~v~~~s~Gi-~eRli~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~v 399 (558)
.|. .++..+|++ ++|++.+|.+....... .++ ..+.+|+|++++.+ ...++.++++.||++||++++
T Consensus 632 FgG~--~vPAVGFSiGIERL~~~L~~~~~~~~~-~~~--~~~~dVlV~s~g~~------~l~~alkia~~LR~aGI~aE~ 700 (763)
T PLN02972 632 FSGK--QVPAVGVSLGIERVFAIMEQQEEEKSQ-VIR--PTETEVLVSIIGDD------KLALAAELVSELWNAGIKAEY 700 (763)
T ss_pred cCCC--CCCEEEEEecHHHHHHHHHHcccCCCC-CCC--CCCCcEEEEEeCHH------HHHHHHHHHHHHHHCCCEEEE
Confidence 233 345566666 99999877543210000 111 23578999998643 577899999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEcCCCCccccccccccChHHHHHHHHHHHH
Q 047998 400 DDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLD 468 (558)
Q Consensus 400 D~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~ll~ 468 (558)
+.. .++++++++|++.|+|++++||++|+++|+|+||++.++++. .|+++++++.|++.|.
T Consensus 701 ~~~--~kl~kq~~~A~k~gi~~vVIIGe~E~~~g~VkVKnL~tgeq~------~V~~delv~~l~~~l~ 761 (763)
T PLN02972 701 KVS--TRKAKHLKRAKESGIPWMVLVGEKELSKGFVKLKNLEAGVEE------EVDRTCFVQELKAELL 761 (763)
T ss_pred eCC--CCHHHHHHHHHHCCCCEEEEECchHHhCCeEEEEECCCCcce------EeeHHHHHHHHHHHhc
Confidence 773 489999999999999999999999999999999999999887 7889999888876664
No 40
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=100.00 E-value=3.2e-34 Score=306.99 Aligned_cols=314 Identities=18% Similarity=0.261 Sum_probs=240.6
Q ss_pred CCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhc-CccccCCceEEEEecCCccccccccccC
Q 047998 106 PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEAS-HVEGFSPELALVTIGGGKELEEKLVVRP 184 (558)
Q Consensus 106 ~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sg-h~~~f~~Emy~~~~~g~~~l~e~l~LRP 184 (558)
+++|+.+|+|.++.+++.|++.+++.|.++||++|.||+|++.++|.+..| +.+.+.++||+|.|.+|+ .++|||
T Consensus 2 ~p~G~~d~~p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~----~l~LRp 77 (397)
T TIGR00442 2 APRGTRDFLPEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKGGR----SLTLRP 77 (397)
T ss_pred CCCCcCCCCHHHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCCCC----EEeecC
Confidence 689999999999999999999999999999999999999999999977654 445577999999998874 899999
Q ss_pred CCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHHHHhh
Q 047998 185 TSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKFAYEH 263 (558)
Q Consensus 185 t~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l~~~~ 263 (558)
+.|+++++++++.. +++++|+|+||+|+|||+|.++.| |.|||+|.|+|++|.+...+|+|++.++ +++..++...
T Consensus 78 D~T~~iaR~~~~~~-~~~~~p~r~~y~g~vfR~e~~~~g--r~ref~Q~g~eiig~~~~~~d~E~i~l~~e~l~~lg~~~ 154 (397)
T TIGR00442 78 EGTAPVARAVIENK-LLLPKPFKLYYIGPMFRYERPQKG--RYRQFHQFGVEVIGSDSPLADAEIIALAAEILKELGIKD 154 (397)
T ss_pred CCcHHHHHHHHhcc-cccCCCeEEEEEcCeecCCCCCCC--cccceEEcCeeeeCCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 99999999988763 356899999999999999999888 9999999999999999989999998887 6777775431
Q ss_pred CCceEEeecCC-----------------c-hhh--------c----cCCCc-----------------------------
Q 047998 264 TAIPVIAGRKS-----------------K-VET--------F----AGASR----------------------------- 284 (558)
Q Consensus 264 l~ipv~~g~k~-----------------~-~ek--------f----~Ga~~----------------------------- 284 (558)
..+ ..|+.. + .++ + .+...
T Consensus 155 ~~i--~i~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 232 (397)
T TIGR00442 155 FTL--EINSLGILEGRLEYREALLRYLDKHLDKLGEDSVRRLEKNPLRILDSKNEKIQELLKEAPKILDFLDEESRAHFE 232 (397)
T ss_pred eEE--EecCcccHHHHHHHHHHHHHHHHHhHhhcCHHHHHHHhhccccCchhhhHHHHHHHhcCHHHHHHhhHHHHHHHH
Confidence 111 111100 0 000 0 00000
Q ss_pred -------ceEEEEEE--cCcccee--ecceEec-----CcccccccCeEEeCC----CCceeeEeeeccch-HHHHHHHH
Q 047998 285 -------TYTIEAMM--GDKRALQ--AGTSHNL-----GQNFSLAFGTQFTDE----NGQRQHVWQTSWAI-STRFVGGI 343 (558)
Q Consensus 285 -------~~~ie~~~--~dgr~lq--~gti~~L-----g~~~s~~f~i~y~d~----~g~~~~v~~~s~Gi-~eRli~~l 343 (558)
.+.+.+.+ .-.|+++ .|.+|+. |..-+-+-|++|++. .|. ..+..+|++ ++|++.++
T Consensus 233 ~l~~~l~~~~~~i~~dl~~~r~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~f~~~--~~~avGfs~~~~~l~~~l 310 (397)
T TIGR00442 233 ELKELLDALGIPYKIDPSLVRGLDYYTGTVFEFVTDELGAQGTICGGGRYDGLVEELGGP--PTPAVGFAIGIERLLLLL 310 (397)
T ss_pred HHHHHHHHcCCCEEECCccccCchhhcceEEEEEECCCCccceeeeccchHHHHHHhCCC--CCceEEeeecHHHHHHHH
Confidence 00011111 1134444 4777643 211334557788752 222 244566666 99999988
Q ss_pred HHHhCCCCCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEEE
Q 047998 344 IMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRI 423 (558)
Q Consensus 344 ie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~~I 423 (558)
.+. | .+|++.+|.+|+|++++.+ ...++.++++.||++|++|+++... .++++++++|+..|+|++|
T Consensus 311 ~~~-----~-~~~~~~~~~~vlV~~~~~~------~~~~~~~i~~~Lr~~gi~v~~~~~~-~~l~k~~~~a~~~g~~~~i 377 (397)
T TIGR00442 311 EEL-----G-LEPPEESSPDVYVVPLGEE------AELEALKLAQKLRKAGIRVEVDLGG-RKLKKQLKYADKLGARFAV 377 (397)
T ss_pred Hhc-----C-CCCCCCCCCcEEEEEeCHH------HHHHHHHHHHHHHhCCCeEEEeCCC-CCHHHHHHHHHHcCCCEEE
Confidence 653 2 3566677899999998643 5678999999999999999999887 5999999999999999999
Q ss_pred EeCceecCCCeEEEEEcCCC
Q 047998 424 EIGPRDVSSGSVVISRRDVP 443 (558)
Q Consensus 424 iIG~kEl~~~~V~Ik~rdt~ 443 (558)
+||++|+++++|+||++.+|
T Consensus 378 ~ig~~e~~~~~v~vrnl~~~ 397 (397)
T TIGR00442 378 ILGEDELANGTVTLKDLETG 397 (397)
T ss_pred EEChhHHhCCeEEEEeCCCC
Confidence 99999999999999999874
No 41
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.7e-34 Score=292.63 Aligned_cols=339 Identities=19% Similarity=0.208 Sum_probs=254.2
Q ss_pred ccccCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccc
Q 047998 101 LADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKL 180 (558)
Q Consensus 101 l~d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l 180 (558)
.++..+++||+||-|..+.+++.|.+.+.+.|++||++.|+||+|+-.++|..+-|. | .+-+|.+.|+|| |-+
T Consensus 57 k~~lKtPKGTrD~~p~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGE-d--skLiYdlkDQGG----El~ 129 (518)
T KOG1936|consen 57 KFSLKTPKGTRDFSPEQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGE-D--SKLIYDLKDQGG----ELC 129 (518)
T ss_pred ceeecCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhccc-c--cceeEehhhcCC----cEE
Confidence 445678999999999999999999999999999999999999999999999776663 1 277999999998 489
Q ss_pred cccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC--CCCccccceEEEecceeee-CChHHHHHHHHHHH-HHH
Q 047998 181 VVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR--TKPFVRTLEFLWQEGHTAH-ATPEEAEKEAMQMI-DIY 256 (558)
Q Consensus 181 ~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~--~rGllR~REF~q~d~h~~~-~~~~~a~~e~~~il-~~y 256 (558)
+|||+.|++++++++.. +---+++|||+.|||++.| ++| |+|||+|||++|+| .++.-+|+|...++ +++
T Consensus 130 SLRYDLTVPfARylAmN----ki~sikRy~iAkVyRRd~P~mtrG--R~REFYQcDFDIAG~~d~M~pdaE~lkiv~e~L 203 (518)
T KOG1936|consen 130 SLRYDLTVPFARYLAMN----KITSIKRYHIAKVYRRDQPAMTRG--RYREFYQCDFDIAGQFDPMIPDAECLKIVVEIL 203 (518)
T ss_pred EeecccccHHHHHHHHc----ccccceeeeEEEEEeccCchhhch--hhhhhhccCccccccCCCCCchHHHHHHHHHHH
Confidence 99999999999877654 2234899999999999999 899 99999999999999 77888899998887 788
Q ss_pred HHHHHhh-----------------CCceE----------EeecCCchhh------------------------ccCC---
Q 047998 257 TKFAYEH-----------------TAIPV----------IAGRKSKVET------------------------FAGA--- 282 (558)
Q Consensus 257 ~~l~~~~-----------------l~ipv----------~~g~k~~~ek------------------------f~Ga--- 282 (558)
..++... .++|- -+-+|..|+. +.|.
T Consensus 204 ~~l~Igd~~iKvNhRkiLdgmf~v~GVp~~~frtICSsIDKLdK~pwedVkkEmv~eKGlsee~ad~igeyv~~~g~~eL 283 (518)
T KOG1936|consen 204 SRLGIGDYGIKVNHRKILDGMFAVCGVPEDKFRTICSSIDKLDKMPWEDVKKEMVFEKGLSEEAADRIGEYVSLKGLDEL 283 (518)
T ss_pred hhcCccceEEEecHHHHHHHHHHHhCCCHHHhhhHHHhhhhhhcCCHHHHHHHHHHhcCCCHHHHHHHHHHhhhccHHHH
Confidence 8775432 23331 0112222221 0110
Q ss_pred ------C-c-----c-----------------eE----EEEEEcCcccee--ecceEec---------------------
Q 047998 283 ------S-R-----T-----------------YT----IEAMMGDKRALQ--AGTSHNL--------------------- 306 (558)
Q Consensus 283 ------~-~-----~-----------------~~----ie~~~~dgr~lq--~gti~~L--------------------- 306 (558)
+ . . +. |.+-+.=.||++ +|.|++.
T Consensus 284 ~e~l~~d~~l~~n~~a~eal~dlk~Lf~y~~~fg~s~~isfDlSLARGLDYYTGvIyEav~~~~~~~~~a~~~~~~~~~e 363 (518)
T KOG1936|consen 284 LEKLIADPKLSQNEAAKEALADLKQLFEYLEIFGISERISFDLSLARGLDYYTGVIYEAVLRGLRLICPAGRYDQAGSTE 363 (518)
T ss_pred HHHHhcCCcccccHHHHHHHHHHHHHHHHHHHcCCcceEEeehHHhccchhhhceeeeeeeccccccCcchhhhcccccc
Confidence 0 0 0 00 110011134444 2333321
Q ss_pred -CcccccccCeEEeC------CCCceeeEeeeccchHHHHHHHHHHHhCCCCCCCCCCCCCCCcEEEEeCCCCcchhHHH
Q 047998 307 -GQNFSLAFGTQFTD------ENGQRQHVWQTSWAISTRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGV 379 (558)
Q Consensus 307 -g~~~s~~f~i~y~d------~~g~~~~v~~~s~Gi~eRli~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~ 379 (558)
+.-.|-+-|.+|++ +.+...|..+.|+| ++|+...|-+.. +..+..+-+ .-.||+|.....+ .
T Consensus 364 ~~~vGSvaaGGRYDnLv~mf~~k~~~vPcvG~S~G-VeRiFsile~r~-~~~~~~iR~--t~t~V~V~~~~k~------~ 433 (518)
T KOG1936|consen 364 PGGVGSVAAGGRYDNLVGMFDKKGDKVPCVGQSVG-VERIFSILEQRA-ATVATKIRT--TETQVYVAAAGKN------L 433 (518)
T ss_pred CCCccccccCcchhhHHHHhccccCcCCccceeeh-HhHHHHHHHHHH-Hhhhhcccc--CceEEEEEecCCc------h
Confidence 11234555677765 33444577777777 999998875543 222333332 3578999887765 6
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEcCCCCccccccccccChHHH
Q 047998 380 LSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSIL 459 (558)
Q Consensus 380 ~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el 459 (558)
+....++.+.||.+||.+++-...+.++-+||+++++.|||++++||.+|++.|.|.|++..+++.+ .++.+++
T Consensus 434 l~eR~k~v~~Lw~agI~aE~~yk~~~~~~~q~~~~e~~~ip~~vi~Ge~El~~G~V~vk~~~~re~~------~v~~e~~ 507 (518)
T KOG1936|consen 434 LFERLKVVNALWDAGIKAEYLYKANPKLLKQFQYAEEAGIPLAVILGEEELADGSVKVKNVGTREEV------LVKREQF 507 (518)
T ss_pred HHHHHHHHHHHHhcCcchhhhhhcCccHHHHHHHHHhcCCCeEEEechhhhcCCeEEEEecccccce------eccHHHH
Confidence 7888899999999999999877655688999999999999999999999999999999999988765 7999999
Q ss_pred HHHHHHHHH
Q 047998 460 EAYVKDKLD 468 (558)
Q Consensus 460 ~~~i~~ll~ 468 (558)
+..|+++++
T Consensus 508 v~~l~~~l~ 516 (518)
T KOG1936|consen 508 VSELKDLLS 516 (518)
T ss_pred HHHHHHHhc
Confidence 999998875
No 42
>PLN02678 seryl-tRNA synthetase
Probab=100.00 E-value=4.2e-32 Score=290.63 Aligned_cols=273 Identities=17% Similarity=0.186 Sum_probs=231.1
Q ss_pred HHHHHHHHHhccccccC---CCCc--ceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCC
Q 047998 89 NAWYLDVISNAELADYG---PVRG--TMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSP 163 (558)
Q Consensus 89 ~~wy~~~~~~a~l~d~~---~vkG--~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~ 163 (558)
...|.+++++.+++|+. .++| ++.+.+.|.++.++|.+++.+.+.+.||++|.+|.|...++| ..+||+..|.+
T Consensus 140 ~~dH~~Lg~~l~l~d~~~~~~vsG~~~y~l~g~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~-~~sG~~~~f~e 218 (448)
T PLN02678 140 LKNHVDLVELLGIVDTERGADVAGGRGYYLKGAGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVM-AKCAQLAQFDE 218 (448)
T ss_pred CCCHHHHHhhccCccchhhhhhcCceeEEECCHHHHHHHHHHHHHHHHHHHcCCEEEECcccccHHHH-hhcCCcccchh
Confidence 36799999999999986 3444 455666999999999999999999999999999999999998 66999999999
Q ss_pred ceEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC-----CCCccccceEEEecceee
Q 047998 164 ELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-----TKPFVRTLEFLWQEGHTA 238 (558)
Q Consensus 164 Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~-----~rGllR~REF~q~d~h~~ 238 (558)
+||.+.+.|+ +++|.||+|++++.++++.+.||++||+|++.+++|||.|.. ++||+|+|||++.|+.++
T Consensus 219 ~my~i~~~~~-----~~yLi~TaE~~l~~~h~~~~~s~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~~ 293 (448)
T PLN02678 219 ELYKVTGEGD-----DKYLIATSEQPLCAYHRGDWIDPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFCI 293 (448)
T ss_pred cCceecCCCC-----ceeeecccccccChHHhcccCCHHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEEEE
Confidence 9999975432 588999999999999999999999999999999999999996 679999999999999887
Q ss_pred eCChHH--HHHHHHHHHHHHHHHHHhhCCceEEeecCCchhhccCCCcceEEEEEEcC-ccceeecceEecCcccccccC
Q 047998 239 HATPEE--AEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD-KRALQAGTSHNLGQNFSLAFG 315 (558)
Q Consensus 239 ~~~~~~--a~~e~~~il~~y~~l~~~~l~ipv~~g~k~~~ekf~Ga~~~~~ie~~~~d-gr~lq~gti~~Lg~~~s~~f~ 315 (558)
+++++ +.+++..|++.+..|+.. |++|+.+..-...+--..+..+|.||++||. ++-.++.++-+.++..|++.+
T Consensus 294 -~~pe~~~s~~~~e~~l~~~~~i~~~-L~lpyrvv~~~sgdlg~~a~~~yDiE~W~P~~~~y~EvsS~Snc~D~QaRRl~ 371 (448)
T PLN02678 294 -TSPNGNESWEMHEEMLKNSEDFYQS-LGIPYQVVSIVSGALNDAAAKKYDLEAWFPASKTYRELVSCSNCTDYQSRRLE 371 (448)
T ss_pred -ECCCchhHHHHHHHHHHHHHHHHHH-cCCCeEEEeecccccCCchhhceeeEeeccccCCceEEeeecccccHhhhccc
Confidence 78887 999999999999999876 8999876433222322335568999999985 445567676678888999999
Q ss_pred eEEeCC---CCceeeEee-eccch-HHHHHHHHHHHhCCCCCCCCCCCCCCCc--EEEEeC
Q 047998 316 TQFTDE---NGQRQHVWQ-TSWAI-STRFVGGIIMTHGDDTGLMLPPRIAPIQ--VVIVPI 369 (558)
Q Consensus 316 i~y~d~---~g~~~~v~~-~s~Gi-~eRli~~lie~~~D~~Gl~lP~~lAP~q--V~Iipi 369 (558)
++|.+. +|+..++|+ ++.|+ +.|+|.||+|+|.+..|+.+|..+-|+- .-+|+.
T Consensus 372 iryr~~~~~~~~~~~vHTLNgt~lA~~R~l~AiLEn~Q~~dgi~iP~vL~pym~g~~~i~~ 432 (448)
T PLN02678 372 IRYGQKKSNEQTKQYVHLLNSTLTATERTLCCILENYQTEDGVRVPEVLQPFMGGIEFLPF 432 (448)
T ss_pred ceecccccCCCCceeEEecCCchhHHHHHHHHHHHhCcCCCCeECChhhhhhcCCCceecC
Confidence 999976 566779998 66777 9999999999998888888999998875 344443
No 43
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=99.98 E-value=9.6e-32 Score=267.11 Aligned_cols=224 Identities=24% Similarity=0.310 Sum_probs=181.4
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHH
Q 047998 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQ 196 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~ 196 (558)
|+.++++|++++++.+.++||++|.||+|++.++|. .++|++.|.++||++++.++...++.++||||.|+++++++++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~ 79 (235)
T cd00670 1 GTALWRALERFLDDRMAEYGYQEILFPFLAPTVLFF-KGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSG 79 (235)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHh-hcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhc
Confidence 678999999999999999999999999999999995 4779999999999999887211124799999999999999999
Q ss_pred hHhhcCCCCeEEEEEeeeeecCCCCC-CccccceEEEecceeeeCChHHHHHHHHHHHHHHHHHHHhhCCceEEeecCCc
Q 047998 197 WIHSYRDLPLLVNQWANVTRWEMRTK-PFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSK 275 (558)
Q Consensus 197 ~i~s~rdLPlkl~q~~~vfR~E~~~r-GllR~REF~q~d~h~~~~~~~~a~~e~~~il~~y~~l~~~~l~ipv~~g~k~~ 275 (558)
++.+|++||+|++|+|+|||+|.+++ |+.|+|||+|.|+|+||. ++++.++...+++++..++.. +++|+.....+.
T Consensus 80 ~~~~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~-~~~~~~~~~e~~~~~~~~l~~-lgl~~~i~~~~~ 157 (235)
T cd00670 80 EILSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGE-PEEAEEERREWLELAEEIARE-LGLPVRVVVADD 157 (235)
T ss_pred cCccchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcC-HHHHHHHHHHHHHHHHHHHHH-cCCcEEEEEccC
Confidence 99999999999999999999999975 899999999999999954 446666777778888888766 577876544444
Q ss_pred hhhc--------cCCCcceEEEEEEcC-ccceeecceEecCcccccccCeEEeCCCCceeeEeeeccch-HHHHHHHHH
Q 047998 276 VETF--------AGASRTYTIEAMMGD-KRALQAGTSHNLGQNFSLAFGTQFTDENGQRQHVWQTSWAI-STRFVGGII 344 (558)
Q Consensus 276 ~ekf--------~Ga~~~~~ie~~~~d-gr~lq~gti~~Lg~~~s~~f~i~y~d~~g~~~~v~~~s~Gi-~eRli~~li 344 (558)
.+.+ ..+..++++++++++ |+..++++++..++.....+.+ +.+.+|....+++.+++. ++|++++|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~d~e~~~~~~g~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~eR~l~all 235 (235)
T cd00670 158 PFFGRGGKRGLDAGRETVVEFELLLPLPGRAKETAVGSANVHLDHFGASF-KIDEDGGGRAHTGCGGAGGEERLVLALL 235 (235)
T ss_pred hhhccCCccccccccCCceEEEEEecCCCCceeeeEEEeecchhhhhccE-EEccCCCceeeEEEeCccHHHHHHHHHC
Confidence 3433 455567888988888 8889999888555444444444 455556556778888776 789999874
No 44
>PLN02320 seryl-tRNA synthetase
Probab=99.97 E-value=1.2e-30 Score=280.85 Aligned_cols=270 Identities=18% Similarity=0.192 Sum_probs=227.2
Q ss_pred CCcch-HHHHHHHHHhccccccCC---CCcceE-eCchhHH-HHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcC
Q 047998 84 RSQDF-NAWYLDVISNAELADYGP---VRGTMV-IRPYGYA-IWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASH 157 (558)
Q Consensus 84 ~~~~~-~~wy~~~~~~a~l~d~~~---vkG~~~-~lP~g~~-i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh 157 (558)
+.-+| .++|.++.++.+|+|+.. ++|... |+|.+.. +.+.|++++.+...+.||++|.+|.|...++| ..+||
T Consensus 193 ~~f~f~~rdH~eLg~~L~Lfdf~~aakvsG~~f~~L~g~~a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~-~~sG~ 271 (502)
T PLN02320 193 REFSFPIKDHLQLGKELDLFDFDAAAEVSGSKFYYLKNEAVLLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVV-EKCGF 271 (502)
T ss_pred CCCCCCCcCHHHHHHHcCCccccchhhcCCCeeEEeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHH-HhcCC
Confidence 33355 388999999999999864 678877 5888666 55899999999999999999999999999999 66999
Q ss_pred ccccCC-ceEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC-----CCCccccceEE
Q 047998 158 VEGFSP-ELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-----TKPFVRTLEFL 231 (558)
Q Consensus 158 ~~~f~~-Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~-----~rGllR~REF~ 231 (558)
+..|.+ ++|.+.+ +.++|-||+|.++..++...+.+|++||+|+..+++|||+|.. ++||+|+|||.
T Consensus 272 ~p~~e~~~~y~ie~-------ed~~Li~TaE~Pl~~~~~~~ils~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~ 344 (502)
T PLN02320 272 QPRGDNTQVYSIDG-------SDQCLIGTAEIPVGGIHMDSILLESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFS 344 (502)
T ss_pred CcccccCceeEECC-------CceEEeecccccccccccccccCHhhCCceeEEeccccccccccCCCcCCCceeeeeee
Confidence 877766 6776642 3699999999999988899999999999999999999999987 57999999999
Q ss_pred EecceeeeCChHHHHHHHHHHHHHHHHHHHhhCCceEEeecCCchhhccCCCcceEEEEEEcC-ccceeecceEecCccc
Q 047998 232 WQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD-KRALQAGTSHNLGQNF 310 (558)
Q Consensus 232 q~d~h~~~~~~~~a~~e~~~il~~y~~l~~~~l~ipv~~g~k~~~ekf~Ga~~~~~ie~~~~d-gr~lq~gti~~Lg~~~ 310 (558)
+.|+|+| |+++++++|+..|++....++.. |++|+....-.-.|--..+..+|+||++||. ++-.+++.+-+.++..
T Consensus 345 KvE~~if-~~peqs~~e~e~ll~~~e~i~~~-LgLpyrvv~l~tgDLg~~a~kkyDiEvW~P~~~~y~EvsS~SNc~DfQ 422 (502)
T PLN02320 345 KVEMFVI-CRPEESESFHEELIQIEEDLFTS-LGLHFKTLDMATADLGAPAYRKFDIEAWMPGLGRYGEISSASNCTDYQ 422 (502)
T ss_pred cccEEEE-ECHHHHHHHHHHHHHHHHHHHHH-cCCCeEEEEecCCccchhhhheEEEEEEecCCCcEEEEeeecchhhHh
Confidence 9999998 99999999999999999999876 8999755433333333456678999999985 5666778877899999
Q ss_pred ccccCeEEeCC--------CC-----ceeeEee-eccch-HHHHHHHHHHHhCCCCC-CCCCCCCCCCc
Q 047998 311 SLAFGTQFTDE--------NG-----QRQHVWQ-TSWAI-STRFVGGIIMTHGDDTG-LMLPPRIAPIQ 363 (558)
Q Consensus 311 s~~f~i~y~d~--------~g-----~~~~v~~-~s~Gi-~eRli~~lie~~~D~~G-l~lP~~lAP~q 363 (558)
|++.+++|.+. +| +.+++|+ ++-|+ +.|+|.+|+|++....| +.+|..+-|+-
T Consensus 423 aRRl~iryr~~~~~~~~~~~~k~~~~~~~~vHTLNgTalAv~R~l~AILENyQ~~dGsi~IP~vLrpym 491 (502)
T PLN02320 423 SRRLGIRYRPSEPPQTNPKKGKGSLGPTKFVHTLNATACAVPRMIVCLLENYQQEDGSVVIPEPLRPFM 491 (502)
T ss_pred hhcccceeccccccccccccccccCCCcceeEecccchhHHHHHHHHHHHhCcCCCCcEECChhhhhhc
Confidence 99999999863 34 3568998 66777 99999999999988778 78898888873
No 45
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.1e-29 Score=262.74 Aligned_cols=352 Identities=20% Similarity=0.271 Sum_probs=239.3
Q ss_pred cCCCCcceEeCchhHHHHHHHHHHHHHHH-HHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEec-----------
Q 047998 104 YGPVRGTMVIRPYGYAIWEAIQDYLNVKF-KETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIG----------- 171 (558)
Q Consensus 104 ~~~vkG~~~~lP~g~~i~~~I~~~i~~~~-~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~----------- 171 (558)
|+.|+|+|||.|.|..+..+|.+.||++| -+-+.-||.+|+|.|..++ |.|||++.|.+-|..=...
T Consensus 32 YgGVsGLyD~GP~Gcalk~Nil~~WRkhFilEE~MlEvdct~ltP~~Vl-kaSGHVdkF~D~mvkD~ktGecfRADHLvk 110 (599)
T KOG2298|consen 32 YGGVSGLYDFGPPGCALKSNILSLWRKHFILEEDMLEVDCTMLTPEPVL-KASGHVDKFADWMVKDEKTGECFRADHLVK 110 (599)
T ss_pred hcCcccccccCCCchhhHHhHHHHHHHHHhhhhcceeeccCcCCcHHHh-hcccchhhhhHHHhcCccccceehhhHHHH
Confidence 46799999999999999999999999999 5779999999999999998 8899999998766411000
Q ss_pred ----------------------------C------------------Ccccc------------------ccccccCCCc
Q 047998 172 ----------------------------G------------------GKELE------------------EKLVVRPTSE 187 (558)
Q Consensus 172 ----------------------------g------------------~~~l~------------------e~l~LRPt~e 187 (558)
+ |.+|+ -+-+|||+..
T Consensus 111 ~~~~rl~~~~~~~~~~e~e~iLa~~d~~s~~el~~~~~kyni~sP~tgn~Ls~p~~FNLMF~T~IGpsG~~kgyLRPETA 190 (599)
T KOG2298|consen 111 DAEERLKKKASAEVKAEMEKILAKLDGYSGQELGELISKYNIKSPVTGNDLSEPRQFNLMFETQIGPSGGLKGYLRPETA 190 (599)
T ss_pred HHHHhhhcccchHHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCCcCCCcCCCcccceeccccccCCCCcccccCcccc
Confidence 0 11221 1358999999
Q ss_pred HHHHHHHHHhHh-hcCCCCeEEEEEeeeeecCCCCC-CccccceEEEecceeeeCChHH---------HHHHHHHHH-HH
Q 047998 188 TIVNHMFTQWIH-SYRDLPLLVNQWANVTRWEMRTK-PFVRTLEFLWQEGHTAHATPEE---------AEKEAMQMI-DI 255 (558)
Q Consensus 188 ~~i~~~~~~~i~-s~rdLPlkl~q~~~vfR~E~~~r-GllR~REF~q~d~h~~~~~~~~---------a~~e~~~il-~~ 255 (558)
.++...|++.+. +.+.||+--.|||+.||+|.+|| ||+|+|||+|.|++.| +++.. ++.++..+. +.
T Consensus 191 QG~FlNFkrlle~N~~KlPFA~AqiG~~fRNEISpRsGLlRvrEF~maEIEHF-vdP~~K~h~kF~~V~~~~l~l~~~~~ 269 (599)
T KOG2298|consen 191 QGQFLNFKRLLEFNQGKLPFASAQIGKSFRNEISPRSGLLRVREFTMAEIEHF-VDPLLKSHPKFSLVAAEKLRLFPRDK 269 (599)
T ss_pred ccccccHHHHHHhcCCCCcchHHHhchHhhhccCcccCceeEEEeehHHhhcc-CCCCCCCChhhhhhhhhhhhhcchhh
Confidence 999999988764 55689999999999999999988 9999999999999998 55432 111211110 00
Q ss_pred H--------HHHHHh-----------------------hCCce-----EEeecC--------Cchh----------hccC
Q 047998 256 Y--------TKFAYE-----------------------HTAIP-----VIAGRK--------SKVE----------TFAG 281 (558)
Q Consensus 256 y--------~~l~~~-----------------------~l~ip-----v~~g~k--------~~~e----------kf~G 281 (558)
- ..+++. .++|. +.--.+ +.|+ +..|
T Consensus 270 q~~g~~a~~~~lgEaV~kg~V~netlGyfi~Ri~~fL~~lGid~~rlRFRqH~~nEMAHYA~DCWDaEi~tSYGWIEcVG 349 (599)
T KOG2298|consen 270 QLSGQSAQKVALGEAVAKGTVNNETLGYFIGRIYLFLNKLGIDKERLRFRQHMANEMAHYAFDCWDAEIKTSYGWIECVG 349 (599)
T ss_pred hhccchhhHhHHHHHHHhhccccchhHHHHHHHHHHHHHhCcchhhcchHHHhhhhhhhhhccccchhhhhccCcEEEee
Confidence 0 001110 01110 000000 0000 0011
Q ss_pred -CC---c---------------------ceEEEEEE--cC-----------ccceeecceE-----------ecCcc--c
Q 047998 282 -AS---R---------------------TYTIEAMM--GD-----------KRALQAGTSH-----------NLGQN--F 310 (558)
Q Consensus 282 -a~---~---------------------~~~ie~~~--~d-----------gr~lq~gti~-----------~Lg~~--~ 310 (558)
|+ + .+.++.++ ++ .+.+.-.... +|+.+ +
T Consensus 350 ~ADRs~yDL~~Hs~~t~~~Lv~~~kl~ePkeve~~~i~~~kk~~g~~fk~~ak~v~~~l~~~s~~e~~~~~~~L~~~g~~ 429 (599)
T KOG2298|consen 350 CADRAAYDLSTHSRASKVWLVAELRLREPKEVEFAVIPPNKKELGCAFKKDAKGVNETLIFPSGKELIETLENLGDHGLL 429 (599)
T ss_pred ccchhheeeecCccccCCceeehhhcCCcceEEEEEeccchhhcchhhhhcccchhHHhhcCCHHHHHHHHHHhhcCCcE
Confidence 00 0 01122211 11 1111100000 01100 0
Q ss_pred -ccccCeEE---eC-CCCcee-------eEeeeccchHHHHHHHHHHHh----CCCC-C-CCCCCCCCCCcEEEEeCCCC
Q 047998 311 -SLAFGTQF---TD-ENGQRQ-------HVWQTSWAISTRFVGGIIMTH----GDDT-G-LMLPPRIAPIQVVIVPIWKK 372 (558)
Q Consensus 311 -s~~f~i~y---~d-~~g~~~-------~v~~~s~Gi~eRli~~lie~~----~D~~-G-l~lP~~lAP~qV~Iipi~~~ 372 (558)
...+++.= .. ...+.. .|..+||| +.|++.+|.|+. +|++ + +.+||-+||+++.|.|++.+
T Consensus 430 ~~~v~~l~k~~v~i~~~~k~~hV~e~~P~VIEPSfG-iGRI~Y~l~EHsF~R~~de~R~~~sfpp~vAPiK~~v~pls~n 508 (599)
T KOG2298|consen 430 HMYVVNLSKLHVRIKRKTKVPHVREVNPDVIEPSFG-IGRISYQLTEHSFTRKGDEQRKVLSFPPLVAPIKVALDPLSPN 508 (599)
T ss_pred EEEEEecccceeeeeeeeeeeeEEeecCCcccccch-hhHHHHHHHhhhhccCcccccceeccCccccceEEEEEeccCc
Confidence 00011000 00 000111 26678999 999999999853 2332 3 57899999999999999876
Q ss_pred cchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEcCCCCcccccccc
Q 047998 373 ADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGI 452 (558)
Q Consensus 373 ~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v 452 (558)
+ ++.+.+..|.+.|++.||.+.+|+++ .|+|+++..-|.+||||-|.|....+++++||+|.||+..|.
T Consensus 509 ~----ef~pv~~~ls~~L~~~gis~kvdds~-~SIGrrYAr~DElgipFgiTvDfdtlk~~tVTlReRdS~~Qv------ 577 (599)
T KOG2298|consen 509 L----EFRPVCQGLSNELTENGISVKVDDSS-SSIGRRYARTDELGIPFGVTVDFDTLKNGTVTLRERDSTMQV------ 577 (599)
T ss_pred h----hHHHHHHHHHHHHHhCCCeEEecCCC-CcHhhhhhccccccCceEEEEchhhhcCceEEEeecccHHHH------
Confidence 3 48899999999999999999999998 599999999999999999999999999999999999998776
Q ss_pred ccChHHHHHHHHHHHHH
Q 047998 453 SMEPSILEAYVKDKLDE 469 (558)
Q Consensus 453 ~v~~~el~~~i~~ll~~ 469 (558)
.++++++...|.+++..
T Consensus 578 R~~i~e~~s~v~~~~~g 594 (599)
T KOG2298|consen 578 RMHISKLKSFLIKYISG 594 (599)
T ss_pred HhhHHHHHHHHHHHhcc
Confidence 78889998888777653
No 46
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=99.96 E-value=3e-29 Score=238.68 Aligned_cols=167 Identities=30% Similarity=0.401 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHHH-HcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHHhH
Q 047998 120 IWEAIQDYLNVKFK-ETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWI 198 (558)
Q Consensus 120 i~~~I~~~i~~~~~-~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i 198 (558)
|+++|++++++.+. +.||++|.||+|++.++|.+ +||++.|.++||+++++++ +.++||||+|++++.++++.+
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~-sg~~~~~~~~~~~~~~~~~----~~~~L~pt~~~~~~~~~~~~~ 75 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEK-SGHWDNFSDEMFKVKDRGD----EEYCLRPTSEPGIYSLFKNEI 75 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHH-HSHHHHHGGGSEEEEETTT----EEEEE-SSSHHHHHHHHHHHE
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhh-ccccccccCCeeeeeeccc----ccEEeccccccceeeeeccee
Confidence 68999999999999 99999999999999999965 9999999999999999886 479999999999999999999
Q ss_pred hh-cCCCCeEEEEEeeeeecC-CCCCCccccceEEEecceeeeCChHHHHHHHHHHHHHHHHHHHhhCCc-eEEeecCCc
Q 047998 199 HS-YRDLPLLVNQWANVTRWE-MRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAI-PVIAGRKSK 275 (558)
Q Consensus 199 ~s-~rdLPlkl~q~~~vfR~E-~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il~~y~~l~~~~l~i-pv~~g~k~~ 275 (558)
.+ |++||++++|+|+|||+| .+++|++|+|||+|.|+|+||.+ +++..++..+++.+.+++.. |++ |+.....+.
T Consensus 76 ~~~~~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~-~~~~~~~~~~~~~~~~i~~~-lgl~~~~~~~~~~ 153 (173)
T PF00587_consen 76 RSSYRDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTP-EQSEEEFEELLELYKEILEK-LGLEPYRIVLSSS 153 (173)
T ss_dssp EBHGGGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESS-HHHHHHHHHHHHHHHHHHHH-TTSGCEEEEEEET
T ss_pred eeccccCCeEEeecccccccccccccccceeeEeeeeceEEEeCC-cccHHHHHHHHHHHHHHHHH-cCCceEEEEEcCC
Confidence 98 999999999999999999 55789999999999999999666 99999999999999999876 899 988776666
Q ss_pred hhhccCCCcceEEEEEEc
Q 047998 276 VETFAGASRTYTIEAMMG 293 (558)
Q Consensus 276 ~ekf~Ga~~~~~ie~~~~ 293 (558)
.+...++.++|++|++++
T Consensus 154 ~~~~~~~~~~~d~e~~~~ 171 (173)
T PF00587_consen 154 GELGAYAKYEFDIEAWFP 171 (173)
T ss_dssp CTSCTTSSEEEEEEEEET
T ss_pred CccCCCHHHcccHHHhCc
Confidence 666677888899998875
No 47
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.96 E-value=2.2e-27 Score=253.59 Aligned_cols=284 Identities=18% Similarity=0.161 Sum_probs=210.9
Q ss_pred CCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEec-CCcccccccccc
Q 047998 105 GPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIG-GGKELEEKLVVR 183 (558)
Q Consensus 105 ~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~-g~~~l~e~l~LR 183 (558)
..++|+.|++|..+..++.|++.+++.|+++||++|.||+|++.++|.+.+|+ ...++||.|.|. +|+ .++||
T Consensus 4 ~~p~G~~D~lp~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~--~~~~~~~~f~d~~~g~----~l~LR 77 (391)
T PRK12292 4 QLPEGIRDLLPEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGA--ILDLRTFKLVDQLSGR----TLGLR 77 (391)
T ss_pred CCCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCc--cchhhhEEEeecCCCC----EEEEC
Confidence 56899999999999999999999999999999999999999999999776664 346889999999 774 89999
Q ss_pred CCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHHHHh
Q 047998 184 PTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKFAYE 262 (558)
Q Consensus 184 Pt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l~~~ 262 (558)
|+.|++++++++.... ....|+|+||+|+|||+|.+++| |+|||+|++++++|.++..||+|++.++ ++++.++.+
T Consensus 78 pD~T~~iaR~~a~~~~-~~~~p~r~~y~g~vfR~~~~~~g--r~ref~Q~g~EiiG~~~~~aDaEvi~l~~~~l~~lgl~ 154 (391)
T PRK12292 78 PDMTAQIARIAATRLA-NRPGPLRLCYAGNVFRAQERGLG--RSREFLQSGVELIGDAGLEADAEVILLLLEALKALGLP 154 (391)
T ss_pred CCCcHHHHHHHHHhcc-CCCCCeEEEeeceeeecCCCcCC--CccchhccceEEeCCCCchHHHHHHHHHHHHHHHcCCC
Confidence 9999999999887543 24679999999999999999999 9999999999999999999999999987 788887643
Q ss_pred hC-----------------CceEE--------eecCC--chhh------------------ccCC---------------
Q 047998 263 HT-----------------AIPVI--------AGRKS--KVET------------------FAGA--------------- 282 (558)
Q Consensus 263 ~l-----------------~ipv~--------~g~k~--~~ek------------------f~Ga--------------- 282 (558)
.+ ++|-. ...+. ..+. ..|.
T Consensus 155 ~~~i~i~~~~i~~~il~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~g~~~~l~~~~~~~~~~~ 234 (391)
T PRK12292 155 NFTLDLGHVGLFRALLEAAGLSEELEEVLRRALANKDYVALEELVLDLSEELRDALLALPRLRGGREVLEEARKLLPSLP 234 (391)
T ss_pred CeEEEeccHHHHHHHHHHcCCCHHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHhccChH
Confidence 11 11100 00000 0000 0110
Q ss_pred --------------------CcceEEEEEEcCcccee--ecceEec---CcccccccCeEEeCCC---CceeeEeeeccc
Q 047998 283 --------------------SRTYTIEAMMGDKRALQ--AGTSHNL---GQNFSLAFGTQFTDEN---GQRQHVWQTSWA 334 (558)
Q Consensus 283 --------------------~~~~~ie~~~~dgr~lq--~gti~~L---g~~~s~~f~i~y~d~~---g~~~~v~~~s~G 334 (558)
...+.++..+ .|+++ .|++|+. +...+-.-|++|++.- |+ .++.++|+
T Consensus 235 ~~~~l~~L~~l~~~l~~~~~~~~i~~D~~l--vrgl~YYtG~vFe~~~~~~~~~i~~GGRYD~L~~~fg~--~~pAvGfa 310 (391)
T PRK12292 235 IKRALDELEALAEALEKYGYGIPLSLDLGL--LRHLDYYTGIVFEGYVDGVGNPIASGGRYDDLLGRFGR--ARPATGFS 310 (391)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceEEEehhh--ccCCcCccceEEEEEECCCCCcccCCcchhhHHHHcCC--CCCCceEE
Confidence 0001122111 45554 4888754 2222355678887632 33 34567777
Q ss_pred h-HHHHHHHHHHHhCCCCCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHH
Q 047998 335 I-STRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNF 413 (558)
Q Consensus 335 i-~eRli~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ 413 (558)
+ ++|++.+ .. +....+.+++|++.++. ....+.++++.||+.|++|+++... .++++++.+
T Consensus 311 i~ldrl~~~---~~--------~~~~~~~~~~v~~~~~~------~~~~a~~~~~~Lr~~G~~~~~~~~~-~~~~~~~~~ 372 (391)
T PRK12292 311 LDLDRLLEL---QL--------ELPVEARKDLVIAPDSE------ALAAALAAAQELRKKGEIVVLALPG-RNFEDAREY 372 (391)
T ss_pred eeHHHHHhh---cc--------ccccccCCcEEEEeCcc------cHHHHHHHHHHHHHcCCEEEEecCC-CChHHHHHH
Confidence 7 9999873 11 11123457788887654 3567899999999999999999886 589999999
Q ss_pred HHHcCC
Q 047998 414 WEMKGI 419 (558)
Q Consensus 414 ae~~Gi 419 (558)
|+..|+
T Consensus 373 a~~~~~ 378 (391)
T PRK12292 373 ARDRQI 378 (391)
T ss_pred HhhcCe
Confidence 999998
No 48
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2e-26 Score=242.91 Aligned_cols=267 Identities=18% Similarity=0.230 Sum_probs=227.9
Q ss_pred cch-HHHHHHHHHhccccccC-----CCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCcc
Q 047998 86 QDF-NAWYLDVISNAELADYG-----PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVE 159 (558)
Q Consensus 86 ~~~-~~wy~~~~~~a~l~d~~-----~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~ 159 (558)
.+| .+.|.++.++.+++|+. +.++++++.+.+.++.++|.+++-+...+.||+++.+|.|++.+.+ ...|.+.
T Consensus 136 ~~f~pk~H~~lge~l~~~Df~~aaKvsGsrf~~~~~~~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m-~gtgqlp 214 (429)
T COG0172 136 FDFEPKDHVELGEKLGLLDFERAAKVSGSRFYFYKGKGARLERALIQFMLDLHTKHGFTEVLPPYLVNLESM-FGTGQLP 214 (429)
T ss_pred ccCCcchHHHHhhhcCcchhhhhcccCCCceEEEcCHHHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHh-hccCCCC
Confidence 466 58899999999999985 3567899999999999999999999999999999999999999998 5689999
Q ss_pred ccCCceEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC-----CCCccccceEEEec
Q 047998 160 GFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-----TKPFVRTLEFLWQE 234 (558)
Q Consensus 160 ~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~-----~rGllR~REF~q~d 234 (558)
+|.++||.+.+. .++|-||+|.+++.++++.+..-.+||+++.-+++|||+|.. +|||+|++||...|
T Consensus 215 kf~e~~y~v~~~-------~~~LipTaEvpl~~l~~~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE 287 (429)
T COG0172 215 KFEEDLYKVEDP-------DLYLIPTAEVPLTNLHRDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVE 287 (429)
T ss_pred CCcccceEecCC-------CEEEEecchhhhHHhhcccccccccCCeeeEEEChhhhcccccccccccceeeeeeeeeEE
Confidence 999999999864 599999999999999999998888999999999999999998 78999999999999
Q ss_pred ceeeeCChHHHHHHHHHHHHHHHHHHHhhCCceEEeecCCchhhccCCCcceEEEEEEcC-ccceeecceEecCcccccc
Q 047998 235 GHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD-KRALQAGTSHNLGQNFSLA 313 (558)
Q Consensus 235 ~h~~~~~~~~a~~e~~~il~~y~~l~~~~l~ipv~~g~k~~~ekf~Ga~~~~~ie~~~~d-gr~lq~gti~~Lg~~~s~~ 313 (558)
...| +.++++..+...|+..-++++.. |++|+.+..-...+--.+|..+|.+|++||. ++.-+++++-+.++..+++
T Consensus 288 ~v~~-~~Pe~S~~~~E~m~~~ae~il~~-LeLPyRvv~lctGDlgf~a~kkYDlEvWlP~q~~yrEisScSnc~DfQaRR 365 (429)
T COG0172 288 LVVI-TKPEESEEELEEMLGNAEEVLQE-LELPYRVVNLCTGDLGFSAAKKYDLEVWLPGQNKYREISSCSNCTDFQARR 365 (429)
T ss_pred EEEE-eCcchhHHHHHHHHHHHHHHHHH-hCCCceEeeeccCCcCCcccCceeEEEEecCCCCceeeeeeeccccHHHHH
Confidence 9998 99999999999999888888776 8899765431112333457789999999986 3334556666777788999
Q ss_pred cCeEEeC-CCCceeeEee-eccch-HHHHHHHHHHHhCCCCC-CCCCCCCCCC
Q 047998 314 FGTQFTD-ENGQRQHVWQ-TSWAI-STRFVGGIIMTHGDDTG-LMLPPRIAPI 362 (558)
Q Consensus 314 f~i~y~d-~~g~~~~v~~-~s~Gi-~eRli~~lie~~~D~~G-l~lP~~lAP~ 362 (558)
++++|.+ .+|+.+++|+ +|.|+ +.|++.+++|++.++.| ...|..+-|+
T Consensus 366 ~~~Ryr~~~~~k~~~vhTLNGsglA~~R~l~AilENyq~~dG~v~IPevL~~y 418 (429)
T COG0172 366 LNIRYRDKEEGKREFVHTLNGSGLAVGRTLVAILENYQQEDGSVKIPEVLRPY 418 (429)
T ss_pred HhcccccccCCCcEEEEeccchHHHHHHHHHHHHHcccCCCCCeeccHHHHhh
Confidence 9999965 5777789998 78888 99999999999887778 4567666554
No 49
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.93 E-value=1.3e-24 Score=232.02 Aligned_cols=280 Identities=14% Similarity=0.089 Sum_probs=200.0
Q ss_pred CCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEec-CCcccccccccc
Q 047998 105 GPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIG-GGKELEEKLVVR 183 (558)
Q Consensus 105 ~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~-g~~~l~e~l~LR 183 (558)
..++|++|++|..+..++.|++.+++.|+++||++|.||+||+.++|.+..|. .....||.|.|. +|+ .++||
T Consensus 8 ~~p~G~rD~lp~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~--~~~~~~y~f~D~~~g~----~l~LR 81 (392)
T PRK12421 8 LLPDGVADVLPEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQ--DLKLQTFKLIDQLSGR----LMGVR 81 (392)
T ss_pred CCCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCc--cchhceEEEEcCCCCc----EEEEC
Confidence 46899999999999999999999999999999999999999999999765553 234579999998 463 79999
Q ss_pred CCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHHHHh
Q 047998 184 PTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKFAYE 262 (558)
Q Consensus 184 Pt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l~~~ 262 (558)
|+.|+++++++++... ...|+|+||+|+|||++.+++| |+|||+|.+++++|.....||+|++.++ ++++.++.+
T Consensus 82 pD~T~~iaR~~a~~~~--~~~p~R~~Y~g~VfR~~~~~~g--r~rEf~Q~GvEiiG~~~~~aDaEvi~l~~e~l~~lgi~ 157 (392)
T PRK12421 82 ADITPQVARIDAHLLN--REGVARLCYAGSVLHTLPQGLF--GSRTPLQLGAELYGHAGIEADLEIIRLMLGLLRNAGVP 157 (392)
T ss_pred CcCCHHHHHHHHhhcC--CCCceEEEEeeeEEEcCCCcCC--CcCccceeceEEeCCCCchhHHHHHHHHHHHHHHcCCC
Confidence 9999999998776532 2679999999999999999999 9999999999999999999999999987 788887642
Q ss_pred h-----------------CCceE----------EeecCCchh--------------------hccCC-------------
Q 047998 263 H-----------------TAIPV----------IAGRKSKVE--------------------TFAGA------------- 282 (558)
Q Consensus 263 ~-----------------l~ipv----------~~g~k~~~e--------------------kf~Ga------------- 282 (558)
. +++|- ...++...+ .+.|.
T Consensus 158 ~~~l~ig~~~i~~~il~~l~l~~~~~~~l~~~l~kk~~~~l~~~~~~~~~~~~~~~~l~~L~~~~g~~~~l~~~~~~~~~ 237 (392)
T PRK12421 158 ALHLDLGHVGIFRRLAELAGLSPEEEEELFDLLQRKALPELAEVCQNLGVGSDLRRMFYALARLNGGLEALDRALSVLAL 237 (392)
T ss_pred CeEEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHhhccc
Confidence 1 11110 000000000 00110
Q ss_pred ------------------------CcceEEEEEEcCcccee--ecceEec---CcccccccCeEEeCCC---CceeeEee
Q 047998 283 ------------------------SRTYTIEAMMGDKRALQ--AGTSHNL---GQNFSLAFGTQFTDEN---GQRQHVWQ 330 (558)
Q Consensus 283 ------------------------~~~~~ie~~~~dgr~lq--~gti~~L---g~~~s~~f~i~y~d~~---g~~~~v~~ 330 (558)
...+.+|.- -.|+++ .|++|+. +...+-.-|++|++.- |+ ..+.
T Consensus 238 ~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~Dls--lvrgldYYTG~vFe~~~~~~~~~i~~GGRYD~L~~~fg~--~~pA 313 (392)
T PRK12421 238 QDAAIRQALDELKTLAAHLKNRWPELPVSIDLA--ELRGYHYHTGLVFAAYIPGRGQALARGGRYDGIGEAFGR--ARPA 313 (392)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhCCCceEEEeec--cccCCCCcCCCEEEEEECCCCCcccCCCCccchhHhhCC--CCCC
Confidence 000112221 245655 5888865 3234456688998743 33 3556
Q ss_pred eccch-HHHHHHHHHHHhCCCCCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHH
Q 047998 331 TSWAI-STRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGW 409 (558)
Q Consensus 331 ~s~Gi-~eRli~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgk 409 (558)
++|++ ++|++.++ +.. + .+ +++|++.+.. ..+.++++.||+.|++|+++..+. ...
T Consensus 314 vGfai~lerL~~~l-~~~----~-------~~-~~~~~~~~~~--------~~~~~~a~~LR~~G~~~~~~~~~~--~~~ 370 (392)
T PRK12421 314 TGFSMDLKELLALQ-FLE----E-------EA-GAILAPWGDD--------PDLLAAIAELRQQGERVVQLLPGD--DGS 370 (392)
T ss_pred ceEEeeHHHHHhhc-ccc----c-------CC-ceEEeecCCc--------HHHHHHHHHHHhCCCEEEEeCCCc--chh
Confidence 77777 99998754 211 1 12 6788876532 236789999999999999987542 111
Q ss_pred HHHHHHHcCCCEEEEeC
Q 047998 410 KFNFWEMKGIPLRIEIG 426 (558)
Q Consensus 410 k~~~ae~~GiP~~IiIG 426 (558)
+ ..+..-.+.+|
T Consensus 371 ----~-~~~~~~~~~~~ 382 (392)
T PRK12421 371 ----S-EPGCDHRLVLQ 382 (392)
T ss_pred ----H-HhCCCeEEEEE
Confidence 2 34666667766
No 50
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=99.91 E-value=5.9e-24 Score=192.44 Aligned_cols=116 Identities=17% Similarity=0.186 Sum_probs=105.8
Q ss_pred HHHhCCCCCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCC--CCHHHHHHHHHHcCCCE
Q 047998 344 IMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQ--RTPGWKFNFWEMKGIPL 421 (558)
Q Consensus 344 ie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~--~slgkk~~~ae~~GiP~ 421 (558)
+|++.|++|++||+.+||+||+|+|+..++ +.+.++|.+|++.|+++|++|.+|++++ .++|+||++||++|+||
T Consensus 10 iE~~~d~~Gl~~P~~iAP~qV~Iipi~~~~---~~~~~~a~~l~~~L~~~gi~v~~D~r~~~~~~~G~k~~~~dliGiP~ 86 (128)
T cd02426 10 RKKGRQRQVLKLHPCLAPYKVAIDCGKGDT---AELRDLCQGLKNELREAGLSVWPGYLETQHSSLEQLLDKYDEMGVLF 86 (128)
T ss_pred hhcCCCCcEEECCCCCCCeEEEEEeccCCh---HHHHHHHHHHHHHHHHcCCEEEeccCcccccCHHHHHHhhhhcCCCE
Confidence 588899999999999999999999995432 4689999999999999999999999874 38999999999999999
Q ss_pred EEEeCceecCCCeEEEEEcCCCCccccccccccChHHHHHHHHHHHH
Q 047998 422 RIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLD 468 (558)
Q Consensus 422 ~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~ll~ 468 (558)
+|+||++++++|+|++++|+|++++ .++++++.+.+.+++.
T Consensus 87 ~I~IG~~~l~~g~vei~~Rdt~~k~------~v~~~~l~~~i~~~~~ 127 (128)
T cd02426 87 TLLISEQTLENGLLQLRSRDTTLKE------TIHISDLPDYLLRYIA 127 (128)
T ss_pred EEEECCCcccCCEEEEEECCCCceE------EEeHHHHHHHHHHHhh
Confidence 9999999999999999999999987 7999999998887654
No 51
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=99.90 E-value=3.4e-24 Score=216.30 Aligned_cols=157 Identities=21% Similarity=0.212 Sum_probs=133.7
Q ss_pred HHHHHhccccc-----cCCCCcceEeCchhHHHHHHHHHHHHHHHHHcC--CeeeecCccccHhhHhhhhcCccccCCce
Q 047998 93 LDVISNAELAD-----YGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETG--HSNMYFPQFIPYSFIEKEASHVEGFSPEL 165 (558)
Q Consensus 93 ~~~~~~a~l~d-----~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G--~~ei~tP~l~~~~l~~k~sgh~~~f~~Em 165 (558)
.+++.+.|++- |+.++|+++|+|.|+.++++|++++++.+.++| |++|.||+|++.++|..+.|+++
T Consensus 2 ~~l~~~~g~~~~~~eiy~~~~G~~d~~P~g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~~mf~~~~g~~d------ 75 (254)
T cd00774 2 VELAKRRGFVFPSSEIYGGVAGFYDYGPLGVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPELMFKTSIGPVE------ 75 (254)
T ss_pred HhHHhhcCCcccChhhccChhcccccCchHHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCHHHheeeecccC------
Confidence 35677777774 345899999999999999999999999999996 99999999999988854445432
Q ss_pred EEEEecCCccccccccccCCCcHHHHHHHHHhHhhcC-CCCeEEEEEeeeeecCCCCC-CccccceEEEecceeeeCChH
Q 047998 166 ALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYR-DLPLLVNQWANVTRWEMRTK-PFVRTLEFLWQEGHTAHATPE 243 (558)
Q Consensus 166 y~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~r-dLPlkl~q~~~vfR~E~~~r-GllR~REF~q~d~h~~~~~~~ 243 (558)
.++ +.++|||++|+.++..|++...+++ +||++++|+|+|||+|.+++ ||+|+|||+|.|+|+| ++++
T Consensus 76 -----~~~----~~~~Lrp~~~~~~~~~~~~~~~~~~~~lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f-~~~~ 145 (254)
T cd00774 76 -----SGG----NLGYLRPETAQGIFVNFKNLLEFNRRKLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFF-VDPE 145 (254)
T ss_pred -----CCC----cccccCCcccchHHHHHHHHHHHhCCCCCchhhhhchhhccccCcccceeeeccchhhheeee-ECCC
Confidence 122 3799999999999998888887765 99999999999999999976 9999999999999999 5777
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCc
Q 047998 244 EAEKEAMQMIDIYTKFAYEHTAI 266 (558)
Q Consensus 244 ~a~~e~~~il~~y~~l~~~~l~i 266 (558)
++..++..+++.+.+++.. +++
T Consensus 146 ~~~e~~~~v~~~~~~~l~~-~G~ 167 (254)
T cd00774 146 KSHPWFDYWADQRLKWLPK-FAQ 167 (254)
T ss_pred CchHHHHHHHHHHHHHHHH-cCC
Confidence 8899999999888888776 454
No 52
>PF09180 ProRS-C_1: Prolyl-tRNA synthetase, C-terminal; InterPro: IPR016061 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Prolyl tRNA synthetase (6.1.1.15 from EC) exists in two forms, which are loosely related. The first form is present in the majority of eubacteria species. The second one, present in some eubacteria, is essentially present in archaea and eukaryota. Prolyl-tRNA synthetase belongs to class IIa. This domain is found at the C-terminal in archaeal and eukaryotic enzymes, as well as in certain bacterial ones.; GO: 0000166 nucleotide binding, 0004827 proline-tRNA ligase activity, 0005524 ATP binding, 0006433 prolyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1NJ6_A 1NJ2_A 1NJ5_A 1NJ1_A 1H4T_C 1H4S_A 1HC7_C 1H4Q_B 3IAL_B.
Probab=99.90 E-value=3.3e-24 Score=172.32 Aligned_cols=67 Identities=51% Similarity=0.910 Sum_probs=56.4
Q ss_pred HHHHHHHHhCCCEEEeeCCCChhhHHHHHHHhCCcccccccC-CCCCCccccccCCCcceEEEEeecC
Q 047998 492 YEELKEAISMGKWARGPWSASDADELKVKEETGATIRCFPFE-QPQGNKTCFMTGNPAQEVALFAKSY 558 (558)
Q Consensus 492 ~ee~k~al~~~~~v~apwc~~~~ce~~ik~~~~a~~~cip~~-~~~~~~~C~~~g~~a~~~~~~~rsY 558 (558)
||||++++++||||++||||+.+||++||++||||+|||||+ ++..+++|++||+||++++||||||
T Consensus 1 ~eE~k~~i~~gg~v~~pwcg~~ece~~ike~t~at~rciP~~~~~~~~~~Ci~cgk~a~~~~~farsY 68 (68)
T PF09180_consen 1 YEEFKEAIEKGGFVLVPWCGDEECEEKIKEETGATIRCIPFDEQEPEGGKCIVCGKPAKKWVLFARSY 68 (68)
T ss_dssp HHHHHHHHHTSSEEEEEES-SHHHHHHHHHHHS-EEEEEETTSCEBTT-B-TTT-SB-SCEEEEE-B-
T ss_pred ChHHHHHHhCCCEEEEEccCCHHHHHHHHHhcCCcEeEeEccCCCCCCCeeecCCChhhEEEEEEEEC
Confidence 789999998899999999999999999999999999999999 6667789999999999999999999
No 53
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=3.3e-23 Score=214.47 Aligned_cols=265 Identities=18% Similarity=0.207 Sum_probs=220.6
Q ss_pred HHHHHHHHhccccccC---CCCcc--eEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCc
Q 047998 90 AWYLDVISNAELADYG---PVRGT--MVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPE 164 (558)
Q Consensus 90 ~wy~~~~~~a~l~d~~---~vkG~--~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~E 164 (558)
..+.++++..+++|.. .++|. |+++..+..+-.+|.++--+.+.+.||.++.+|.|.+.+++ .+.|-...|.++
T Consensus 152 ~~~~~l~~~~~~~~~~~~a~vsG~r~Yyl~g~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rkeVm-~~cg~~~~~d~~ 230 (455)
T KOG2509|consen 152 SHHDELVRALGFIDLERGAKVSGHRGYYLKGAGAFLEQALINYALDFLNAKGYTPLTTPDILRKEVM-QKCGQLPRFDEE 230 (455)
T ss_pred ccHHHHHHhcccccccchhhcccccceEEcCHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHH-HHhccCcCCCcc
Confidence 5678899999997753 36775 78899999999999999999999999999999999999998 557877779999
Q ss_pred eEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC-----CCCccccceEEEecceeee
Q 047998 165 LALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-----TKPFVRTLEFLWQEGHTAH 239 (558)
Q Consensus 165 my~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~-----~rGllR~REF~q~d~h~~~ 239 (558)
.|.+.|.+. +.+|--|+|.+++.++++......+||+|+.-.+.|||.|.. ++||+|++||...|...+
T Consensus 231 ~~y~ld~~~-----~~~LiaTaE~plAa~~~~e~~~~~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fvi- 304 (455)
T KOG2509|consen 231 QYYVLDGGD-----EKYLIATAEQPLAAYHRDEWLEEDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFVI- 304 (455)
T ss_pred eEEeecCCc-----cceeEeeccchhhhhhcccccccccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEEEe-
Confidence 999998773 689999999999999887776668999999999999999994 789999999999999998
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhhCCceEEeecCCchhhccCCCcceEEEEEEcC-ccceeecceEecCcccccccCeEE
Q 047998 240 ATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD-KRALQAGTSHNLGQNFSLAFGTQF 318 (558)
Q Consensus 240 ~~~~~a~~e~~~il~~y~~l~~~~l~ipv~~g~k~~~ekf~Ga~~~~~ie~~~~d-gr~lq~gti~~Lg~~~s~~f~i~y 318 (558)
++++++.+++..|+.+-..|+.. |+||+...+.+..+--.-|...|+||++||. |+--++.+.-|.-+..|++++|+|
T Consensus 305 t~Pe~S~~~~eEmi~~~eef~qs-Lgip~rvl~m~S~eLg~aAakKyDiEAWmPgrg~ygEl~ScSNCTDyQSRRL~IRy 383 (455)
T KOG2509|consen 305 TGPEDSWEMLEEMINNQEEFYQS-LGLPYRVLNMPSGELGAAAAKKYDIEAWMPGRGAYGELVSCSNCTDYQSRRLGIRY 383 (455)
T ss_pred cCcchhHHHHHHHHHHHHHHHHH-hCCceeEecCCchhhCcHHHhhcchhhhcCcccccccccccccchhHHHhhhhhhc
Confidence 99999999999999888888877 8999866544433433345567999999984 222233333345567799999999
Q ss_pred e---CCCCceeeEee-eccch-HHHHHHHHHHHhCCCCCCCCCCCCCCC
Q 047998 319 T---DENGQRQHVWQ-TSWAI-STRFVGGIIMTHGDDTGLMLPPRIAPI 362 (558)
Q Consensus 319 ~---d~~g~~~~v~~-~s~Gi-~eRli~~lie~~~D~~Gl~lP~~lAP~ 362 (558)
. ..+|...+||+ ++... ++|+|.+|+|+|.++.|+.+|..+-|+
T Consensus 384 ~~~k~~~~~~~yvHtLN~TacA~~R~l~aiLEnyQ~edGi~VPe~Lr~y 432 (455)
T KOG2509|consen 384 GQKKTNDGEKKYVHTLNGTACATPRALCAILENYQTEDGIEVPEVLRPY 432 (455)
T ss_pred ccccccCCccceeeecchhhHhhhHHHHHhHhhccCCCCccCCHhHHhh
Confidence 8 47788889998 44444 999999999999999999999877766
No 54
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=99.86 E-value=5.3e-21 Score=193.81 Aligned_cols=135 Identities=22% Similarity=0.254 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHHh
Q 047998 118 YAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQW 197 (558)
Q Consensus 118 ~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~ 197 (558)
+.+++.|++.+++.|+++||++|.||+|++.++|.+.. ++...++||.|.|.+|+ .++|||+.|+++++++++.
T Consensus 2 ~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~--~~~~~~~~~~~~d~~g~----~l~LRpd~T~~iaR~~a~~ 75 (261)
T cd00773 2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKS--GDEVSKEMYRFKDKGGR----DLALRPDLTAPVARAVAEN 75 (261)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccc--cccccceEEEEECCCCC----EEEeCCCCcHHHHHHHHhc
Confidence 57899999999999999999999999999999995543 34577899999998874 7999999999999999887
Q ss_pred HhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHHHH
Q 047998 198 IHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKFAY 261 (558)
Q Consensus 198 i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l~~ 261 (558)
..+ .++|+|+||+|+|||+|.++.| |.|||+|.++++++.++..+|+|++.++ ++++.++.
T Consensus 76 ~~~-~~~p~k~~y~g~vfR~e~~~~g--~~re~~Q~g~Eiig~~~~~~daE~i~l~~~~l~~lg~ 137 (261)
T cd00773 76 LLS-LPLPLKLYYIGPVFRYERPQKG--RYREFYQVGVEIIGSDSPLADAEVIALAVEILEALGL 137 (261)
T ss_pred Ccc-CCCCeEEEEEcCEEecCCCCCC--CccceEEeceeeeCCCChHHHHHHHHHHHHHHHHcCC
Confidence 665 5799999999999999999888 9999999999999999999999998887 78888764
No 55
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=99.83 E-value=1.8e-20 Score=194.90 Aligned_cols=141 Identities=19% Similarity=0.171 Sum_probs=127.1
Q ss_pred eEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHH
Q 047998 111 MVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIV 190 (558)
Q Consensus 111 ~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i 190 (558)
+|++|.++.+++.|++.+++.|+++||++|.||+|++.++|.+.++ ...++||.|.|.+|+ .++|||+.|+++
T Consensus 1 ~D~~p~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~---~~~~~~~~~~d~~g~----~l~LRpD~T~~i 73 (314)
T TIGR00443 1 RDLLPEEAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGG---ILNEDLFKLFDSLGR----VLGLRPDMTTPI 73 (314)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCC---cchhceEEEECCCCC----EEeecCcCcHHH
Confidence 4789999999999999999999999999999999999999966443 367899999998874 899999999999
Q ss_pred HHHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHHHH
Q 047998 191 NHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKFAY 261 (558)
Q Consensus 191 ~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l~~ 261 (558)
+++++...+ ..++|+|++|+|+|||+|.++.| |.|||+|.++|+++.++..+|+|++.++ +++..++.
T Consensus 74 aR~~~~~~~-~~~~p~r~~y~g~VfR~~~~~~g--r~re~~Q~g~Eiig~~~~~adaEvi~l~~~~l~~lg~ 142 (314)
T TIGR00443 74 ARAVSTRLR-DRPLPLRLCYAGNVFRTNESGAG--RSREFTQAGVELIGAGGPAADAEVIALLIEALKALGL 142 (314)
T ss_pred HHHHHHhcc-cCCCCeEEEEeceEeecCCCcCC--CcccccccceEEeCCCCchhHHHHHHHHHHHHHHcCC
Confidence 999887654 45789999999999999999989 9999999999999999999999999887 78877754
No 56
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.80 E-value=3.7e-19 Score=181.97 Aligned_cols=138 Identities=13% Similarity=0.070 Sum_probs=119.1
Q ss_pred ccCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccc
Q 047998 103 DYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVV 182 (558)
Q Consensus 103 d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~L 182 (558)
++..++|++|++|..+.+++.|++.+++.|+++||++|.||+||+.+++.. .-.++||.|.|.+|+ .++|
T Consensus 4 ~~~~p~G~rD~lp~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~------~~~~~~y~~~D~~g~----~l~L 73 (281)
T PRK12293 4 EHEIPQGSKLYFGKSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSI------ADEKELIRFSDEKNH----QISL 73 (281)
T ss_pred CCCCCCcccccCcHHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcc------cchhceEEEECCCCC----EEEE
Confidence 456799999999999999999999999999999999999999999998832 235789999998874 8999
Q ss_pred cCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHHHH
Q 047998 183 RPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKFAY 261 (558)
Q Consensus 183 RPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l~~ 261 (558)
||+.|+++++++++.... ..+|+|+||+|+|||+|. |||+|.+++++|.+.. +|++.++ ++++.++.
T Consensus 74 RpD~T~~iaR~~a~~~~~-~~~p~r~~Y~g~vfR~~~--------rEf~Q~GvEliG~~~~---~Evi~la~~~l~~lgl 141 (281)
T PRK12293 74 RADSTLDVVRIVTKRLGR-STEHKKWFYIQPVFRYPS--------NEIYQIGAELIGEEDL---SEILNIAAEIFEELEL 141 (281)
T ss_pred CCcCCHHHHHHHHHhccc-CCCceeEEEeccEEecCC--------CcccccCeEeeCCCCH---HHHHHHHHHHHHHcCC
Confidence 999999999998775432 368999999999999984 8999999999998875 4777766 77777764
Q ss_pred h
Q 047998 262 E 262 (558)
Q Consensus 262 ~ 262 (558)
+
T Consensus 142 ~ 142 (281)
T PRK12293 142 E 142 (281)
T ss_pred C
Confidence 3
No 57
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=99.79 E-value=8.1e-19 Score=181.99 Aligned_cols=142 Identities=18% Similarity=0.190 Sum_probs=118.6
Q ss_pred cceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcH
Q 047998 109 GTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSET 188 (558)
Q Consensus 109 G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~ 188 (558)
|++|++|..++.++.|++.+.+.|+++||++|.||+|++.+++...++. ..+++|.|.|.+|+ .++|||+.|.
T Consensus 1 G~~d~~~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~---~~~~~~~~~D~~G~----~l~LR~D~T~ 73 (311)
T PF13393_consen 1 GFRDLLPEEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGE---DSDNMYRFLDRSGR----VLALRPDLTV 73 (311)
T ss_dssp T---B-HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSST---TGGCSEEEECTTSS----EEEE-SSSHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhcccc---chhhhEEEEecCCc----EeccCCCCcH
Confidence 8999999999999999999999999999999999999999999654432 24589999998874 8999999999
Q ss_pred HHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHH-HHHH
Q 047998 189 IVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYT-KFAY 261 (558)
Q Consensus 189 ~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~-~l~~ 261 (558)
+++++++.... ...|.|+||+|+|||++.++.| |.|||+|++++++|.+...+|+|++.++ +++. .++.
T Consensus 74 ~iaR~~a~~~~--~~~~~r~~y~g~vfR~~~~~~g--~~re~~Q~g~Eiig~~~~~~daEvi~l~~e~l~~~l~~ 144 (311)
T PF13393_consen 74 PIARYVARNLN--LPRPKRYYYIGPVFRYERPGKG--RPREFYQCGFEIIGSSSLEADAEVIKLADEILDRELGL 144 (311)
T ss_dssp HHHHHHHHCCG--SSSSEEEEEEEEEEEEETTTTT--BESEEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC--cCCCceEEEEcceeeccccCCC--CCceeEEEEEEEECCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 99999888643 5789999999999999999989 9999999999999999999999999987 7886 6654
No 58
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.77 E-value=7.2e-18 Score=163.60 Aligned_cols=207 Identities=25% Similarity=0.262 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHHhHh
Q 047998 120 IWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIH 199 (558)
Q Consensus 120 i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~ 199 (558)
+|+.+++.+++.|...||+||.||.|++.+.+.+ .+.. .+.+..+.+..+ +..+|||+.++++..+++++.
T Consensus 1 ~~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~-~~~~---~~~~~~~~~~~~----~~~~LR~s~~~~l~~~~~~n~- 71 (211)
T cd00768 1 IRSKIEQKLRRFMAELGFQEVETPIVEREPLLEK-AGHE---PKDLLPVGAENE----EDLYLRPTLEPGLVRLFVSHI- 71 (211)
T ss_pred CHHHHHHHHHHHHHHcCCEEeEcceecHHHHHHH-cCcc---HhheeeeecCCC----CEEEECCCCcHHHHHHHHhhc-
Confidence 4788999999999999999999999999988743 4432 234555555443 478999999999999998876
Q ss_pred hcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHHHHHHHHHHhhCCc--eEEeecCCchh
Q 047998 200 SYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAI--PVIAGRKSKVE 277 (558)
Q Consensus 200 s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il~~y~~l~~~~l~i--pv~~g~k~~~e 277 (558)
+++|+++|++|+|||.|..+.++.|++||.|.+++++|....++ .++..+..++..++.. +++ ++.........
T Consensus 72 --~~~~~~lfeig~vfr~e~~~~~~~~~~ef~~l~~~~~g~~~~~~-~~~~~~~~~~~~~l~~-lg~~~~~~~~~~~~~~ 147 (211)
T cd00768 72 --RKLPLRLAEIGPAFRNEGGRRGLRRVREFTQLEGEVFGEDGEEA-SEFEELIELTEELLRA-LGIKLDIVFVEKTPGE 147 (211)
T ss_pred --ccCCEEEEEEcceeecCCCccccccceeEEEcCEEEEcCCchhH-HHHHHHHHHHHHHHHH-cCCCcceEEEecCchh
Confidence 68999999999999999876655699999999999998665432 2344455555555543 443 33222112222
Q ss_pred hc-cCCCcceEEEEEEcCccceeecceEecCcccccccCeEEeCCCCceeeEeeeccch-HHHH
Q 047998 278 TF-AGASRTYTIEAMMGDKRALQAGTSHNLGQNFSLAFGTQFTDENGQRQHVWQTSWAI-STRF 339 (558)
Q Consensus 278 kf-~Ga~~~~~ie~~~~dgr~lq~gti~~Lg~~~s~~f~i~y~d~~g~~~~v~~~s~Gi-~eRl 339 (558)
.+ .....++.|.+.++.+|+.++|++..+..+..+.|+++|.+.+++...++..+||+ ++|+
T Consensus 148 ~~~~~~g~~~~i~~~~~~~~~~eig~~g~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~R~ 211 (211)
T cd00768 148 FSPGGAGPGFEIEVDHPEGRGLEIGSGGYRQDEQARAADLYFLDEALEYRYPPTIGFGLGLERL 211 (211)
T ss_pred hccccCCceEEEEEEccCCCeEEEeeceeecCchhHhhhhheecccccccCceeecCccCccCC
Confidence 22 14445566666556678888999988888888999999998888777778888887 7774
No 59
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.73 E-value=2.9e-17 Score=147.43 Aligned_cols=103 Identities=28% Similarity=0.502 Sum_probs=91.7
Q ss_pred CCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEEEEeCceecCC
Q 047998 353 LMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSS 432 (558)
Q Consensus 353 l~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~~ 432 (558)
++||+|++|++|+|+|.+++ +....++.+|++.||++|++|++|++ . ++++++++|++.|+|++|+||++|+++
T Consensus 18 ~~~P~~lap~~v~Ii~~~~~----~~~~~~a~~la~~LR~~gi~v~~d~~-~-sl~kqlk~A~k~g~~~~iiiG~~e~~~ 91 (121)
T cd00858 18 LRLPPALAPIKVAVLPLVKR----DELVEIAKEISEELRELGFSVKYDDS-G-SIGRRYARQDEIGTPFCVTVDFDTLED 91 (121)
T ss_pred EEcCCCcCCcEEEEEecCCc----HHHHHHHHHHHHHHHHCCCEEEEeCC-C-CHHHHHHHhHhcCCCEEEEECcCchhC
Confidence 57999999999999999721 13678999999999999999999998 5 999999999999999999999999999
Q ss_pred CeEEEEEcCCCCccccccccccChHHHHHHHHHHH
Q 047998 433 GSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKL 467 (558)
Q Consensus 433 ~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~ll 467 (558)
++|+|++++++++. .++++++.+.+.+++
T Consensus 92 ~~v~lk~l~~~~~~------~v~l~~l~~~l~~~~ 120 (121)
T cd00858 92 GTVTIRERDSMRQV------RVKIEELPSYLRELI 120 (121)
T ss_pred CEEEEEECCCCceE------EEEHHHHHHHHHHHh
Confidence 99999999998876 688888877776553
No 60
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=1.5e-17 Score=179.93 Aligned_cols=157 Identities=31% Similarity=0.475 Sum_probs=140.5
Q ss_pred cceeecceEecCcccccccCeEEeCCCCceeeEeeeccch-HHHHHHHHHHHhCCCCCCCCCCCCCCCcEEEEeCCCCcc
Q 047998 296 RALQAGTSHNLGQNFSLAFGTQFTDENGQRQHVWQTSWAI-STRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKAD 374 (558)
Q Consensus 296 r~lq~gti~~Lg~~~s~~f~i~y~d~~g~~~~v~~~s~Gi-~eRli~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~~ 374 (558)
+++.+|++|+||.++++.++.++.+.+|+.++.+|+|||+ ++|+++++++++.|++|+.||..+||+++.|++++.++
T Consensus 340 e~ieVghif~lG~kyse~~~a~v~~r~g~~~~~~mg~ygigvsr~v~a~ieq~~d~~gi~w~~a~apf~~~iv~~n~~~- 418 (500)
T COG0442 340 EGIEVGHIFELGTKYSEAMNATVLDRDGKEQPKTMGCYGIGVSRLVAALLEQIHDENGIIWPKAIAPFDVHIVPVNTKD- 418 (500)
T ss_pred eccccCEEEEECchhhhhCeeEEEecCCCccceEEEehhhhhhhHHHHHHHHhcccccCccccccCcceeEEEEcCchh-
Confidence 4566899999999999999999999999999999999999 99999999999999999999988999999999998642
Q ss_pred hhHHHHHHHHHHHHHHhhCC-cEEEEeCCCCCCHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEcCCCCccccccccc
Q 047998 375 EKTGVLSAALSAKEVLQKSG-IRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGIS 453 (558)
Q Consensus 375 ~~~~~~~~a~~I~~~Lr~~G-irv~vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~ 453 (558)
......+.+++..|...| ..|.+|+++. .+|.+|.+|+++|+|+.+++|++ .++|.|.++.|.+|++. .
T Consensus 419 --~~~~~~~~~~~~~l~~~G~~e~~~ddr~e-r~g~k~~~a~liGiP~~~~~g~~-~~~g~~e~k~r~~ge~~------~ 488 (500)
T COG0442 419 --FKQAEAAEKLYVELPWCGTVEVLLDDRDE-RPGVKFADADLIGIPLRIVVGKR-LAEGEVEVKCRKCGEKE------A 488 (500)
T ss_pred --HHHHHHhhhHHHHHHhCCchhhhhhhhcc-ccCccccCCeEecccceeeeccc-ccCCceeEEecCCCchh------h
Confidence 345677788999999999 9999999984 99999999999999999999998 88999999999999876 5
Q ss_pred cChHHHHHHH
Q 047998 454 MEPSILEAYV 463 (558)
Q Consensus 454 v~~~el~~~i 463 (558)
++...+.+.+
T Consensus 489 ~~~~~l~~~~ 498 (500)
T COG0442 489 VTIEALFARL 498 (500)
T ss_pred ccHHHHHHHh
Confidence 6556665543
No 61
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=99.70 E-value=6.3e-17 Score=138.23 Aligned_cols=94 Identities=35% Similarity=0.597 Sum_probs=86.4
Q ss_pred cEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEcCC
Q 047998 363 QVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDV 442 (558)
Q Consensus 363 qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt 442 (558)
||+|+|++.++ +...++|.+|++.|+++||+|++|+++ .++|+||++|++.|+||+|+||++|+++|+|+|++|++
T Consensus 1 qv~Ii~~~~~~---~~~~~~a~~l~~~L~~~gi~v~~d~~~-~~~~k~~~~a~~~g~p~~iiiG~~e~~~~~v~vk~~~~ 76 (94)
T PF03129_consen 1 QVVIIPVGKKD---EEIIEYAQELANKLRKAGIRVELDDSD-KSLGKQIKYADKLGIPFIIIIGEKELENGTVTVKDRDT 76 (94)
T ss_dssp SEEEEESSCSH---HHHHHHHHHHHHHHHHTTSEEEEESSS-STHHHHHHHHHHTTESEEEEEEHHHHHTTEEEEEETTT
T ss_pred CEEEEEeCCCc---HHHHHHHHHHHHHHHHCCCEEEEECCC-CchhHHHHHHhhcCCeEEEEECchhHhCCEEEEEECCC
Confidence 79999998752 358899999999999999999999987 59999999999999999999999999999999999999
Q ss_pred CCccccccccccChHHHHHHHHHH
Q 047998 443 PGKQGKVFGISMEPSILEAYVKDK 466 (558)
Q Consensus 443 ~ek~~~~~~v~v~~~el~~~i~~l 466 (558)
+++. .++++++++.|++.
T Consensus 77 ~~~~------~v~~~el~~~l~~~ 94 (94)
T PF03129_consen 77 GEQE------TVSLEELIEYLKEN 94 (94)
T ss_dssp TEEE------EEECCHHHHHHHHH
T ss_pred CcEE------EEEHHHHHHHHhhC
Confidence 9876 78999999988763
No 62
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.70 E-value=7.2e-17 Score=171.18 Aligned_cols=128 Identities=16% Similarity=0.161 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHHhHhh
Q 047998 121 WEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHS 200 (558)
Q Consensus 121 ~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s 200 (558)
.+.|.+.+++.|+++||++|.||+|++.++|...+|. ...++||.|.|.+|+ .++|||+.|+++++++...
T Consensus 7 ~~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~--~~~~~~~~f~D~~G~----~l~LRpD~T~piaR~~~~~--- 77 (373)
T PRK12295 7 SAAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGE--DIRRRIFVTSDENGE----ELCLRPDFTIPVCRRHIAT--- 77 (373)
T ss_pred HHHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCc--hhhcceEEEECCCCC----EEeeCCCCcHHHHHHHHHc---
Confidence 4589999999999999999999999999999665553 245789999999885 7999999999999987654
Q ss_pred cCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeC-ChHHHHHHHHHHH-HHHHHHHHh
Q 047998 201 YRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHA-TPEEAEKEAMQMI-DIYTKFAYE 262 (558)
Q Consensus 201 ~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~-~~~~a~~e~~~il-~~y~~l~~~ 262 (558)
....|+|+||+|+|||+| +| |+|||+|.+++++|. +...||+|++.++ ++++.++..
T Consensus 78 ~~~~p~R~~Y~g~VfR~~---~g--r~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~lgl~ 136 (373)
T PRK12295 78 AGGEPARYAYLGEVFRQR---RD--RASEFLQAGIESFGRADPAAADAEVLALALEALAALGPG 136 (373)
T ss_pred CCCCCeEEEEEccEEECC---CC--CCCcceEeeEEeeCCCCCccchHHHHHHHHHHHHHcCCC
Confidence 236799999999999999 67 999999999999996 4578999999987 788887643
No 63
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional
Probab=99.69 E-value=1.3e-16 Score=165.82 Aligned_cols=134 Identities=29% Similarity=0.382 Sum_probs=109.4
Q ss_pred EeCCCCceeeEeee-ccch--HHHHHHHHHHHhCCCCCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCC
Q 047998 318 FTDENGQRQHVWQT-SWAI--STRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSG 394 (558)
Q Consensus 318 y~d~~g~~~~v~~~-s~Gi--~eRli~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~G 394 (558)
|.|..+.-+.++.+ ++-. ++|++.+++.+...+.-+.||+|+||.||+|+|++++ ..++|.+|++.||++|
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~L~~a~~e~~~~LPpwLAP~qV~IIpl~ee------l~e~AlkLA~eLR~aG 301 (387)
T PRK14938 228 FIDSKNRIKIWWVNESRTYVDVGLLVYYFLLESIRKQPPTLPDWLNPIQVRILPVKKD------FLDFSIQVAERLRKEG 301 (387)
T ss_pred hhcccccEEEEecCCCEEEEEecHHHHHHHHHhhhHHhCcCCCccCcceEEEEEeChH------HHHHHHHHHHHHHHCC
Confidence 44555554444332 3333 8999888776544333569999999999999999643 6789999999999999
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEcCCCCccccccccccChHHHHHHHH
Q 047998 395 IRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVK 464 (558)
Q Consensus 395 irv~vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~ 464 (558)
++|++|+++ .++|+|+++|++.|+|++|+||++|+++|+|+|++|++++|. .++++++.+.++
T Consensus 302 IrVeiDl~s-rSLgKQiK~AdK~GaPfvIIIGedEle~gtVtIKdrdTgEQ~------~IsLdELie~Lk 364 (387)
T PRK14938 302 IRVNVDDLD-DSLGNKIRRAGTEWIPFVIIIGEREVKTSTLTVKIRANNEQK------SMTVEELVKEIK 364 (387)
T ss_pred CEEEEECCC-CCHHHHHHHHHHcCCCEEEEECchhhhCCeEEEEECCCCceE------EEeHHHHHHHHH
Confidence 999999987 599999999999999999999999999999999999999886 688888766554
No 64
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.66 E-value=5e-16 Score=132.38 Aligned_cols=93 Identities=32% Similarity=0.467 Sum_probs=83.4
Q ss_pred CCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEc
Q 047998 361 PIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRR 440 (558)
Q Consensus 361 P~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~r 440 (558)
|+||+|+|+..++ +...++|.+++..||++|++|++|++. .++|+++++|++.|+|++|+||++|+++++|+|++|
T Consensus 1 P~qv~i~p~~~~~---~~~~~~a~~la~~Lr~~g~~v~~d~~~-~~l~k~i~~a~~~g~~~~iiiG~~e~~~~~v~vk~~ 76 (94)
T cd00861 1 PFDVVIIPMNMKD---EVQQELAEKLYAELQAAGVDVLLDDRN-ERPGVKFADADLIGIPYRIVVGKKSAAEGIVEIKVR 76 (94)
T ss_pred CeEEEEEEcCCCc---HHHHHHHHHHHHHHHHCCCEEEEECCC-CCcccchhHHHhcCCCEEEEECCchhhCCEEEEEEC
Confidence 8999999998642 346789999999999999999999997 599999999999999999999999999999999999
Q ss_pred CCCCccccccccccChHHHHHHH
Q 047998 441 DVPGKQGKVFGISMEPSILEAYV 463 (558)
Q Consensus 441 dt~ek~~~~~~v~v~~~el~~~i 463 (558)
+++++. .++++++.+.+
T Consensus 77 ~~~~~~------~~~~~~~~~~l 93 (94)
T cd00861 77 KTGEKE------EISIDELLEFL 93 (94)
T ss_pred CCCcce------EEeHHHHHHhh
Confidence 998876 67888876554
No 65
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=99.58 E-value=3.7e-15 Score=156.59 Aligned_cols=147 Identities=18% Similarity=0.179 Sum_probs=129.5
Q ss_pred cCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCcccccccccc
Q 047998 104 YGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVR 183 (558)
Q Consensus 104 ~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LR 183 (558)
+..+.|+.|.+|..+...+.|.+.+.+.|.+.||+.|.||+|++.+.|.-..|+ .-...+|.++|..|+ .++||
T Consensus 3 ~~lp~g~rd~Lp~e~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~--~l~~~~f~l~d~~g~----~l~LR 76 (390)
T COG3705 3 WQLPEGIRDVLPLEARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGE--DLRRRLFKLEDETGG----RLGLR 76 (390)
T ss_pred CcCCCcchhcchhHHhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccch--hhhhhheEEecCCCC----eEEec
Confidence 457899999999999999999999999999999999999999999999665554 335679999998885 69999
Q ss_pred CCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHHHH
Q 047998 184 PTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKFAY 261 (558)
Q Consensus 184 Pt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l~~ 261 (558)
|+.|++++++..+...+ .|.|++|.|+|||....-.| |..||+|.+++.+|.+...||+|++.++ .+.+..+.
T Consensus 77 pD~T~pVaR~~~~~~~~---~P~Rl~Y~G~Vfr~~~~~~g--~~~Ef~QaGiEllG~~~~~ADaEvi~la~~~L~~~gl 150 (390)
T COG3705 77 PDFTIPVARIHATLLAG---TPLRLSYAGKVFRAREGRHG--RRAEFLQAGIELLGDDSAAADAEVIALALAALKALGL 150 (390)
T ss_pred ccccHHHHHHHHHhcCC---CCceeeecchhhhcchhccC--cccchhhhhhHHhCCCcchhhHHHHHHHHHHHHHcCC
Confidence 99999999988877654 89999999999999944557 7789999999999999999999998865 77777764
No 66
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.56 E-value=2.6e-14 Score=120.76 Aligned_cols=90 Identities=28% Similarity=0.424 Sum_probs=80.9
Q ss_pred CCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEc
Q 047998 361 PIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRR 440 (558)
Q Consensus 361 P~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~r 440 (558)
|+||+|++.+.. ..++|.++++.||+.|++|++|++. .++|+++++|++.|+|++|+||++|+.++++++++|
T Consensus 1 p~~v~ii~~~~~------~~~~a~~~~~~Lr~~g~~v~~d~~~-~~~~~~~~~a~~~g~~~~iiig~~e~~~~~v~lk~~ 73 (91)
T cd00860 1 PVQVVVIPVTDE------HLDYAKEVAKKLSDAGIRVEVDLRN-EKLGKKIREAQLQKIPYILVVGDKEVETGTVSVRTR 73 (91)
T ss_pred CeEEEEEeeCch------HHHHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEEC
Confidence 789999998653 5789999999999999999999997 699999999999999999999999999999999999
Q ss_pred CCCCccccccccccChHHHHHHH
Q 047998 441 DVPGKQGKVFGISMEPSILEAYV 463 (558)
Q Consensus 441 dt~ek~~~~~~v~v~~~el~~~i 463 (558)
.++++. .++++++.+.|
T Consensus 74 ~~~~~~------~~~~~~~~~~~ 90 (91)
T cd00860 74 DGGDLG------SMSLDEFIEKL 90 (91)
T ss_pred CCCccc------eEcHHHHHHHh
Confidence 998876 67777776544
No 67
>PRK07080 hypothetical protein; Validated
Probab=99.49 E-value=1.6e-12 Score=132.02 Aligned_cols=251 Identities=19% Similarity=0.180 Sum_probs=168.9
Q ss_pred HHHHHHHHhccccccCCCCcceEeCchhHHHHHHHHHHHHHHHHHcC----CeeeecCccccHhhHhhhhcCccccCCce
Q 047998 90 AWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETG----HSNMYFPQFIPYSFIEKEASHVEGFSPEL 165 (558)
Q Consensus 90 ~wy~~~~~~a~l~d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G----~~ei~tP~l~~~~l~~k~sgh~~~f~~Em 165 (558)
..+.+-+..+||.-...+.|.|-.-+ +++.|.+.++..+.++| ++++.+|-++|.+.|. +++++++|=..|
T Consensus 19 ~~~~~~l~~~g~~~~~g~~g~ygrs~----~fe~v~~~ld~~i~~lg~~~~~e~~~FPpl~~~~~~e-k~~Y~ksFP~l~ 93 (317)
T PRK07080 19 NDFRDELFDAGLLIPTGVDGLYGRSG----LFEDVVEALDALITRLGADQGAEVLRFPPVMSRAEFE-RSGYLKSFPQLA 93 (317)
T ss_pred hhHHHHHHhcCceeccCCCccccccH----HHHHHHHHHHHHHHHhccccCCceeeCCCCCCHHHHH-hcChhhhCcccc
Confidence 33666677787765566889885544 45555555555655555 9999999999999995 499999997778
Q ss_pred EEEEecCCcc-------------------c-cccccccCCCcHHHHHHHHHh-HhhcCCCCeEEEEEeeeeecCCCCCCc
Q 047998 166 ALVTIGGGKE-------------------L-EEKLVVRPTSETIVNHMFTQW-IHSYRDLPLLVNQWANVTRWEMRTKPF 224 (558)
Q Consensus 166 y~~~~~g~~~-------------------l-~e~l~LRPt~e~~i~~~~~~~-i~s~rdLPlkl~q~~~vfR~E~~~rGl 224 (558)
+.+..=.|++ + ...++|.|..|.++|++++.. ... .+- ..+--.|.|||||.. +++
T Consensus 94 ~~V~~~~g~~~e~~~ll~~~~~~~~~~~~l~~~~~vL~pAaCyP~Yp~l~~~g~lp-~~g-~~~dv~g~CFR~E~s-~dl 170 (317)
T PRK07080 94 GTVHSFCGNEAEHRRLLACLDRGEDWTESQKPTDVVLTPAACYPVYPVLARRGALP-ADG-RLVDVASYCFRHEPS-LDP 170 (317)
T ss_pred eeecCCCCCCHHHHHHHHHHHhcCchhhhcCCCcceecccccccchhhhccCcccC-CCC-cEEEeeeeeeccCCC-CCc
Confidence 8765422211 1 236899999999999988753 222 121 455567899999997 578
Q ss_pred cccceEEEecceeeeCChHHHHHHHHHHHHHHHHHHHhhCCceEEeecCCchhhccCCC----------cceEEEEEEc-
Q 047998 225 VRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGAS----------RTYTIEAMMG- 293 (558)
Q Consensus 225 lR~REF~q~d~h~~~~~~~~a~~e~~~il~~y~~l~~~~l~ipv~~g~k~~~ekf~Ga~----------~~~~ie~~~~- 293 (558)
-|+.||+|-|.-.+| |++++.+--...++....+... |++++..-. ..+-|-|.. ..+..|..++
T Consensus 171 ~Rl~~F~mrE~V~iG-t~e~v~~~r~~w~e~~~~l~~~-LgL~~~ve~--AnDPFF~~~gk~~a~~Qr~~~lKfEl~vpi 246 (317)
T PRK07080 171 ARMQLFRMREYVRIG-TPEQIVAFRQSWIERGTAMADA-LGLPVEIDL--ANDPFFGRGGKIVAASQREQNLKFELLIPI 246 (317)
T ss_pred HHHhheeeeEEEEec-CHHHHHHHHHHHHHHHHHHHHH-hCCceeEee--cCCccccccchhhhhhhhhccceeEEEEec
Confidence 899999999999995 7777743333334555555444 677764311 111122211 1244565553
Q ss_pred --CccceeecceEecCcccccccCeEEeCCCCceeeEeeeccch-HHHHHHHHHHHhCCCCCCCCCC
Q 047998 294 --DKRALQAGTSHNLGQNFSLAFGTQFTDENGQRQHVWQTSWAI-STRFVGGIIMTHGDDTGLMLPP 357 (558)
Q Consensus 294 --dgr~lq~gti~~Lg~~~s~~f~i~y~d~~g~~~~v~~~s~Gi-~eRli~~lie~~~D~~Gl~lP~ 357 (558)
++++..++++-+-++.|++.|+|+. .+|. ++|++|.|+ +||+..+|+.+||-|-. .||.
T Consensus 247 ~~~~~~tA~~S~NyH~dhFg~~f~I~~--~~g~--~ahTgCvGFGlER~a~All~~hG~d~~-~WP~ 308 (317)
T PRK07080 247 YSDAPPTACMSFNYHMDHFGLTWGIRT--ADGA--VAHTGCVGFGLERLALALFRHHGLDPA-AWPA 308 (317)
T ss_pred CCCCCceEEEEEehhhhccccccCccc--CCCC--EeEEeeeecCHHHHHHHHHHHhCCChh-hccH
Confidence 2456666555445778999999965 3444 689999999 99999999999964433 4554
No 68
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=99.47 E-value=3.7e-13 Score=114.20 Aligned_cols=92 Identities=28% Similarity=0.508 Sum_probs=80.9
Q ss_pred CCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEc
Q 047998 361 PIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRR 440 (558)
Q Consensus 361 P~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~r 440 (558)
|++|+|+|.+.+ +.....++.++++.||+.|++|++|++. .++++++++|++.|+|++++||++|+++++|++++|
T Consensus 1 p~~v~ii~~~~~---~~~~~~~a~~~~~~Lr~~g~~v~~~~~~-~~~~k~~~~a~~~g~~~~iiig~~e~~~~~v~i~~~ 76 (94)
T cd00738 1 PIDVAIVPLTDP---RVEAREYAQKLLNALLANGIRVLYDDRE-RKIGKKFREADLRGVPFAVVVGEDELENGKVTVKSR 76 (94)
T ss_pred CeEEEEEECCCC---cHHHHHHHHHHHHHHHHCCCEEEecCCC-cCHhHHHHHHHhCCCCEEEEECCChhhCCEEEEEEC
Confidence 789999998752 1236789999999999999999999987 599999999999999999999999999999999999
Q ss_pred CCCCccccccccccChHHHHHH
Q 047998 441 DVPGKQGKVFGISMEPSILEAY 462 (558)
Q Consensus 441 dt~ek~~~~~~v~v~~~el~~~ 462 (558)
+++++. .++++++.+.
T Consensus 77 ~~~~~~------~~~~~~~~~~ 92 (94)
T cd00738 77 DTGESE------TLHVDELPEF 92 (94)
T ss_pred CCCcee------EEEHHHHHhh
Confidence 998876 6777777554
No 69
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.42 E-value=9e-13 Score=139.66 Aligned_cols=132 Identities=15% Similarity=0.145 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCcc--ccCCceEEEEecCCccccccccccCCCcHHHHHHH
Q 047998 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVE--GFSPELALVTIGGGKELEEKLVVRPTSETIVNHMF 194 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~--~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~ 194 (558)
...-++.|++.+++.|..+||+||.||+|++.+.+.+ .++.+ .+.++||.+. +.++|||+.++++++++
T Consensus 238 ~~~~~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~-m~~~~g~eI~n~Iyk~e--------e~lvLRPdLTPsLaR~L 308 (453)
T TIGR02367 238 REDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIER-MGIDNDTELSKQIFRVD--------KNFCLRPMLAPNLYNYL 308 (453)
T ss_pred cccHHHHHHHHHHHHHHHCCCEEEECCeecchHHHHh-hcCccCCcccccceEec--------CceEecccCHHHHHHHH
Confidence 3456899999999999999999999999987777643 33322 2567888863 26999999999999877
Q ss_pred HHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHHHHHHHHHH
Q 047998 195 TQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAY 261 (558)
Q Consensus 195 ~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il~~y~~l~~ 261 (558)
++..+ +..+|+|+|++|+|||+|.++.+ |+|||+|.++.++|.....+|.+. .+.++++.++.
T Consensus 309 a~N~~-~l~~PqKIFEIGkVFR~E~~~~t--hlREF~QL~~eIaG~~atfaDlea-lL~e~Lr~LGI 371 (453)
T TIGR02367 309 RKLDR-ALPDPIKIFEIGPCYRKESDGKE--HLEEFTMLNFCQMGSGCTRENLEA-IIKDFLDHLEI 371 (453)
T ss_pred HHhhh-hccCCeeEEEEcCeEecCCCCCC--CcCeEEEEEEEEECCCCCHHHHHH-HHHHHHHHCCC
Confidence 65422 34789999999999999999888 999999999999987776665552 22256666544
No 70
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.30 E-value=1.6e-11 Score=124.96 Aligned_cols=121 Identities=4% Similarity=-0.053 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCc-eEEEEecCCccccccccccCCCcHHHHHHHHHh
Q 047998 119 AIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPE-LALVTIGGGKELEEKLVVRPTSETIVNHMFTQW 197 (558)
Q Consensus 119 ~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~E-my~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~ 197 (558)
.-.+.|++.+++.|+++||++|.||+||+.+++. .+++ ..... ++.+.+.+|+ .++|||+.|++++++++..
T Consensus 8 ~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~-~~~~--~~~~~~~~~~~~~~Gr----~laLRpD~T~~iAR~~a~~ 80 (272)
T PRK12294 8 IALKESETAFLKYFNKADYELVDFSVIEKLDWKQ-LNHE--DLQQMGERSFWQHEHQ----IYALRNDFTDQLLRYYSMY 80 (272)
T ss_pred HHHHHHHHHHHHHHHHcCCeEeeCCcchhHHhhh-cccc--chhhhheeeeecCCCC----EEEEcCCCCHHHHHHHHhc
Confidence 4578899999999999999999999999999973 2332 11223 3456566664 8999999999999988653
Q ss_pred HhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHHH
Q 047998 198 IHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKFA 260 (558)
Q Consensus 198 i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l~ 260 (558)
. .-|.|++|+|+|||++.+ |+|.+++++|.+ .+++.|...++ +....++
T Consensus 81 ~----~~~~Rl~Y~g~VfR~~~~---------~~Q~GvEliG~~-~~a~~e~l~la~~~l~~~g 130 (272)
T PRK12294 81 P----TAATKVAYAGLIIRNNEA---------AVQVGIENYAPS-LANVQQSFKLFIQFIQQQL 130 (272)
T ss_pred C----CCCceEEEeccEeccCCC---------cceeceEEECCC-chhHHHHHHHHHHHHHHhC
Confidence 1 346799999999999853 899999999865 67777766554 5666653
No 71
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.24 E-value=4.9e-11 Score=126.86 Aligned_cols=115 Identities=15% Similarity=0.148 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCcc--ccCCceEEEEecCCccccccccccCCCcHHHHHHHH
Q 047998 118 YAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVE--GFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFT 195 (558)
Q Consensus 118 ~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~--~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~ 195 (558)
..-+..|++.+++.|..+||+||.||.|++.+.|.. .++.. .+.++||.+. +.++|||+.+++++.+++
T Consensus 203 ~~~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~-~g~~~g~~i~~~my~id--------eel~LRpsLtPsLlr~la 273 (417)
T PRK09537 203 EDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIER-MGIDNDTELSKQIFRVD--------KNFCLRPMLAPGLYNYLR 273 (417)
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHHH-hCCCCcccchhhheeeC--------CceEehhhhHHHHHHHHH
Confidence 344788999999999999999999999999888744 55432 3456787752 369999999999988776
Q ss_pred HhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHH
Q 047998 196 QWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEE 244 (558)
Q Consensus 196 ~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~ 244 (558)
.. .++.++|+|+|++|+|||+|..+.+ +++||+|.++.++|.....
T Consensus 274 ~n-~k~~~~P~RIFEIG~VFR~E~~g~~--hlrEf~Ql~~~iiGs~~~f 319 (417)
T PRK09537 274 KL-DRILPDPIKIFEIGPCYRKESDGKE--HLEEFTMVNFCQMGSGCTR 319 (417)
T ss_pred hh-hhcccCCeeEEEEeceEecCCCCCC--CcceEEEEEEEEeCCchHH
Confidence 43 3456889999999999999987777 9999999999999754433
No 72
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.14 E-value=3e-10 Score=94.86 Aligned_cols=88 Identities=22% Similarity=0.385 Sum_probs=76.3
Q ss_pred cEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEcCC
Q 047998 363 QVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDV 442 (558)
Q Consensus 363 qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt 442 (558)
+|+|+|.++. ...+|.+++..||+.|++|+++..+ .++++++.+|.+.|+|+++++|+++..+++++++++++
T Consensus 3 ~v~i~~~~~~------~~~~a~~i~~~Lr~~g~~v~~~~~~-~~~~~~~~~a~~~~~~~~i~i~~~~~~~~~~~i~~~~~ 75 (91)
T cd00859 3 DVYVVPLGEG------ALSEALELAEQLRDAGIKAEIDYGG-RKLKKQFKYADRSGARFAVILGEDELAAGVVTVKDLET 75 (91)
T ss_pred cEEEEEcChH------HHHHHHHHHHHHHHCCCEEEEecCC-CCHHHHHHHHHHcCCCEEEEEcHHHHhCCcEEEEECCC
Confidence 7889987643 5678999999999999999999876 58999999999999999999999999999999999998
Q ss_pred CCccccccccccChHHHHHHH
Q 047998 443 PGKQGKVFGISMEPSILEAYV 463 (558)
Q Consensus 443 ~ek~~~~~~v~v~~~el~~~i 463 (558)
+++. .++++++.+.+
T Consensus 76 ~~~~------~~~~~~~~~~~ 90 (91)
T cd00859 76 GEQE------TVALDELVEEL 90 (91)
T ss_pred CCcE------EEeHHHHHHHh
Confidence 8765 56777765543
No 73
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=99.11 E-value=1.5e-10 Score=127.57 Aligned_cols=139 Identities=14% Similarity=0.098 Sum_probs=102.5
Q ss_pred CcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccH-----hhHh--------------hhhcCc----------
Q 047998 108 RGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPY-----SFIE--------------KEASHV---------- 158 (558)
Q Consensus 108 kG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~-----~l~~--------------k~sgh~---------- 158 (558)
.| .+++|.....+..+.+.+++.|..+||+++.+|++++. .||. .+.+..
T Consensus 223 ~~-~~~~~~~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~ 301 (489)
T PRK04172 223 PP-PKIYPGKKHPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVER 301 (489)
T ss_pred CC-CCCCCCCCChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHHH
Confidence 45 88999999999999999999999999999999999954 3332 111100
Q ss_pred ------cc-c---CCceEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccc
Q 047998 159 ------EG-F---SPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTL 228 (558)
Q Consensus 159 ------~~-f---~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~R 228 (558)
.+ + ..-+|.+.+.++ +.++|||..|+++.+++.+ +...|+|+|++|+|||+|.++.+ |+|
T Consensus 302 v~~~he~g~~~~~~~~~y~~~~~~~----~~~~LR~~~T~~~~r~l~~----~~~~p~rlFeiGrVFR~e~~d~~--~l~ 371 (489)
T PRK04172 302 VKEVHEHGGDTGSRGWGYKWDEDIA----KRLVLRTHTTALSARYLAS----RPEPPQKYFSIGRVFRPDTIDAT--HLP 371 (489)
T ss_pred HHHHHhccCCCCCccccCCcchhhh----hccccccCChHHHHHHHHh----cCCCCeEEEEecceEcCCCCCcc--cCC
Confidence 00 0 001344444444 4799999999999998876 34679999999999999998878 889
Q ss_pred eEEEecceeeeCChHHHHHHHHHHH-HHHHHH
Q 047998 229 EFLWQEGHTAHATPEEAEKEAMQMI-DIYTKF 259 (558)
Q Consensus 229 EF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l 259 (558)
||+|.++.++|.... ..++..++ +++..+
T Consensus 372 Ef~ql~~~i~G~~~~--f~elkg~l~~ll~~l 401 (489)
T PRK04172 372 EFYQLEGIVMGEDVS--FRDLLGILKEFYKRL 401 (489)
T ss_pred chheEEEEEEeCCCC--HHHHHHHHHHHHHHh
Confidence 999999999986432 34444444 344444
No 74
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=98.90 E-value=3e-08 Score=107.68 Aligned_cols=147 Identities=16% Similarity=0.170 Sum_probs=103.1
Q ss_pred CcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhh-----hhcCccccCCceEEEEec-----------
Q 047998 108 RGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEK-----EASHVEGFSPELALVTIG----------- 171 (558)
Q Consensus 108 kG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k-----~sgh~~~f~~Emy~~~~~----------- 171 (558)
.| ....+-...-...+.+.+++.|...||+++.+|-.+-.++|.= -..|-.-=..+.|++.+.
T Consensus 219 ~~-~~~~~g~~HPl~~~~~~i~~if~~mGF~e~~~~~~ves~f~NFDaL~~PqdHPARd~~DTFyl~~~~~~~~~~~p~~ 297 (494)
T PTZ00326 219 LG-KKIGGGNLHPLLKVRREFREILLEMGFEEMPTNRYVESSFWNFDALFQPQQHPARDAQDTFFLSKPETSKVNDLDDD 297 (494)
T ss_pred CC-CCCCCCCCChHHHHHHHHHHHHHhCCCEEecCCCCccccchhhhhhcCCCCCCCCCcCceEEEcCccccccccCcHH
Confidence 44 3455566778889999999999999999999875444444421 123433223345666531
Q ss_pred -----------CC-----------ccccccccccCCCcHHHHHHHHHhHhhc---CC-CCeEEEEEeeeeecCCCCCCcc
Q 047998 172 -----------GG-----------KELEEKLVVRPTSETIVNHMFTQWIHSY---RD-LPLLVNQWANVTRWEMRTKPFV 225 (558)
Q Consensus 172 -----------g~-----------~~l~e~l~LRPt~e~~i~~~~~~~i~s~---rd-LPlkl~q~~~vfR~E~~~rGll 225 (558)
|| .+....++||+..|+..++++.++.+.+ .. .|+|++++|+|||+|...++
T Consensus 298 ~~~~Vk~~He~G~~gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~~Dat-- 375 (494)
T PTZ00326 298 YVERVKKVHEVGGYGSIGWRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNETLDAT-- 375 (494)
T ss_pred HHHHHHHHhccCCcCCcccccccccchhccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCCCCCCC--
Confidence 00 0012479999999999999988765431 12 39999999999999999889
Q ss_pred ccceEEEecceeeeCChHHHHHHHHHHH-HHHHHH
Q 047998 226 RTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKF 259 (558)
Q Consensus 226 R~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l 259 (558)
|++||||.|+.+++... ++++++.++ ++|+++
T Consensus 376 H~~eFhQ~Eg~vi~~~~--s~~~L~~~l~~f~~~l 408 (494)
T PTZ00326 376 HLAEFHQVEGFVIDRNL--TLGDLIGTIREFFRRI 408 (494)
T ss_pred cCceeEEEEEEEEeCCC--CHHHHHHHHHHHHHhc
Confidence 99999999999997665 455666555 455554
No 75
>PRK09350 poxB regulator PoxA; Provisional
Probab=98.73 E-value=2e-08 Score=104.32 Aligned_cols=118 Identities=14% Similarity=0.082 Sum_probs=86.3
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEe-cCCcccccccccc--CCCcHHHHHH
Q 047998 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTI-GGGKELEEKLVVR--PTSETIVNHM 193 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~-~g~~~l~e~l~LR--Pt~e~~i~~~ 193 (558)
-.+++..|.+.+++.|.+.||.||.||+|+..... ..+...|..+ |.+.+ .+| ..++|| |+.+ +-++
T Consensus 4 ~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~---~~~~~~f~~~-y~~~~~~~~----~~~~L~~SPe~~--~kr~ 73 (306)
T PRK09350 4 NLLKRAKIIAEIRRFFADRGVLEVETPILSQATVT---DIHLVPFETR-FVGPGASQG----KTLWLMTSPEYH--MKRL 73 (306)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCC---CccCCceeee-eccccccCC----cceEEecCHHHH--HHHH
Confidence 36789999999999999999999999999875542 2233334434 44333 333 478999 6544 3333
Q ss_pred HHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH
Q 047998 194 FTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI 253 (558)
Q Consensus 194 ~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il 253 (558)
++ +. +. |+||+|+|||+|.++.+ +..||+|.|.+.++.+-.+....+..++
T Consensus 74 la----~~--~~-rvf~i~~~FR~e~~~~~--H~~EFt~lE~y~~~~d~~dlm~~~E~li 124 (306)
T PRK09350 74 LA----AG--SG-PIFQICKSFRNEEAGRY--HNPEFTMLEWYRPHYDMYRLMNEVDDLL 124 (306)
T ss_pred hh----cc--cc-ceEEecceeecCCCCCC--CCcHHHhhhhhhhCCCHHHHHHHHHHHH
Confidence 32 21 33 99999999999999777 9999999999999888777776666555
No 76
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.62 E-value=2.1e-07 Score=94.88 Aligned_cols=119 Identities=13% Similarity=0.080 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEec-CCccccccccccCCCcHHHHHHHHHh
Q 047998 119 AIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIG-GGKELEEKLVVRPTSETIVNHMFTQW 197 (558)
Q Consensus 119 ~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~-g~~~l~e~l~LRPt~e~~i~~~~~~~ 197 (558)
+++..|.+.+++.|.+.||.+|.||+|+... +| + ..+.|.+... +| +.+.|+-..+-. .+..
T Consensus 2 ~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~-----~~---~-~~~~f~~~~~~~g----~~~~L~~Spql~----~~~~ 64 (269)
T cd00669 2 KVRSKIIKAIRDFMDDRGFLEVETPMLQKIT-----GG---A-GARPFLVKYNALG----LDYYLRISPQLF----KKRL 64 (269)
T ss_pred cHHHHHHHHHHHHHHHCCCEEEECCEEeccC-----Cc---c-ccceEEeeecCCC----CcEEeecCHHHH----HHHH
Confidence 5788999999999999999999999997542 11 1 1246766432 33 378888443321 1222
Q ss_pred HhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHH
Q 047998 198 IHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKF 259 (558)
Q Consensus 198 i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l 259 (558)
+.+. +. |+||+++|||+|..+++ +++||+|.|++..+.+-++....+..++ .+++.+
T Consensus 65 ~~~~--~~-~vf~i~~~fR~e~~~~~--hl~EF~~le~e~~~~~~~dvm~~~e~lv~~i~~~~ 122 (269)
T cd00669 65 MVGG--LD-RVFEINRNFRNEDLRAR--HQPEFTMMDLEMAFADYEDVIELTERLVRHLAREV 122 (269)
T ss_pred HhcC--CC-cEEEEecceeCCCCCCC--cccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHH
Confidence 2232 22 99999999999976777 9999999999988888888777777666 455544
No 77
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=98.42 E-value=2.7e-06 Score=85.70 Aligned_cols=118 Identities=13% Similarity=0.044 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeeecCccccH-hhHhh---hhcCccccCCceEEEEecCCccccccccccCCCcHHHHH
Q 047998 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPY-SFIEK---EASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNH 192 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~-~l~~k---~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~ 192 (558)
...-...+.+.+++.|...||+++..|.+++. ..|.+ ..+|..-=..+.|++.+..+. .++..+||...++...+
T Consensus 15 ~~hp~~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~-~~~~~vLRThts~~~~~ 93 (247)
T PF01409_consen 15 RLHPITKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSA-EEDYSVLRTHTSPGQLR 93 (247)
T ss_dssp BTSHHHHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBC-ECSSEEE-SSTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccc-cchhhhhhhhhhHHHHH
Confidence 44567888999999999999999999999653 33322 122432223445666443220 12579999988887776
Q ss_pred HHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCC
Q 047998 193 MFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHAT 241 (558)
Q Consensus 193 ~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~ 241 (558)
.+ .+++..|+|++.+|+|||.|....- .+.+|+|.|+-.++..
T Consensus 94 ~l----~~~~~~p~kif~iG~VyR~D~~D~t--h~~~f~Qleg~~~~~~ 136 (247)
T PF01409_consen 94 TL----NKHRPPPIKIFEIGKVYRRDEIDAT--HLPEFHQLEGLVVDKN 136 (247)
T ss_dssp HH----TTTSHSSEEEEEEEEEESSSCSBSS--BESEEEEEEEEEEETT
T ss_pred HH----HHhcCCCeEEEecCceEecCCcccc--cCccceeEeeEEEecc
Confidence 65 4566789999999999999996332 6779999999988643
No 78
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=7.8e-05 Score=87.28 Aligned_cols=131 Identities=15% Similarity=0.084 Sum_probs=101.5
Q ss_pred eEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHH
Q 047998 111 MVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIV 190 (558)
Q Consensus 111 ~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i 190 (558)
..+.+.-..+.+.+...+-+.|+++|+.++.||.+.+..- -..|..+.+.+.|.||. .+.|-.+...++
T Consensus 925 ~~~~~~~~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~~~-------~~~~~~~~v~~ld~sG~----~v~Lp~DLr~pf 993 (1351)
T KOG1035|consen 925 IQYTEINNELREYVVEEVVKIFRKHGAIELETPPLSLRNA-------CAYFSRKAVELLDHSGD----VVELPYDLRLPF 993 (1351)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhcceeccCCccccccc-------cchhccceeeeecCCCC----EEEeeccccchH
Confidence 4667778888899999999999999999999995543321 12355678888888884 788888888888
Q ss_pred HHHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHHH
Q 047998 191 NHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKFA 260 (558)
Q Consensus 191 ~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l~ 260 (558)
++++...- -+-+|.|.++.|||-+...+| +||++++++|++.+..-.++|++.++ ++....+
T Consensus 994 ar~vs~N~----~~~~Kry~i~rVyr~~~~~hP----~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~~l 1056 (1351)
T KOG1035|consen 994 ARYVSRNS----VLSFKRYCISRVYRPAIHNHP----KECLECDFDIIGPTTSLTEAELLKVIVEITTEIL 1056 (1351)
T ss_pred HHHhhhch----HHHHHHhhhheeecccccCCC----ccccceeeeEecCCCCccHHHHHHHHHHHHHHHh
Confidence 87765542 345899999999999885334 78999999999987778888988876 6665543
No 79
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=98.23 E-value=7.6e-06 Score=84.06 Aligned_cols=119 Identities=13% Similarity=0.080 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHHhH
Q 047998 119 AIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWI 198 (558)
Q Consensus 119 ~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i 198 (558)
+++..|.+.+|+.|.+.||.||.||+|....- + |. .+ |.+...... ...+.|+-..+ ++.+.+
T Consensus 2 ~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~---~-g~-----~~-f~~~~~~~~--~~~~~L~~Spq-----l~lk~l 64 (280)
T cd00777 2 RLRSRVIKAIRNFLDEQGFVEIETPILTKSTP---E-GA-----RD-FLVPSRLHP--GKFYALPQSPQ-----LFKQLL 64 (280)
T ss_pred chHHHHHHHHHHHHHHCCCEEEeCCeeecCCC---C-CC-----CC-ceeccccCC--CceeecccCHH-----HHHHHH
Confidence 57889999999999999999999999974432 1 11 11 221111100 12445653322 344433
Q ss_pred hhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHH
Q 047998 199 HSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTK 258 (558)
Q Consensus 199 ~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~ 258 (558)
... .+ =|+||++++||+|.+.++ |..||+|.|++..+.+-++....+..++ .++..
T Consensus 65 l~~-g~-~~v~~i~~~fR~e~~~~~--r~~Ef~~~e~e~~~~~~~dlm~~~e~li~~i~~~ 121 (280)
T cd00777 65 MVS-GF-DRYFQIARCFRDEDLRAD--RQPEFTQIDIEMSFVDQEDIMSLIEGLLKYVFKE 121 (280)
T ss_pred Hhc-Cc-CcEEEeccceeCCCCCCC--ccceeEEeEeeeccCCHHHHHHHHHHHHHHHHHH
Confidence 211 22 389999999999999888 9999999999999888787777776665 34443
No 80
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=98.15 E-value=2.5e-05 Score=82.29 Aligned_cols=126 Identities=19% Similarity=0.148 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHH
Q 047998 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQ 196 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~ 196 (558)
-++++..|.+.+++.|.+.||.||.||+|..... ++ ..+.|.+....+.-.++++.|+...+- +.+
T Consensus 21 ~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~--------~~-~~~~F~v~~~~~~~~~~~~~L~~Spql-----~~k 86 (335)
T PF00152_consen 21 ILRIRSAILQAIREFFDKRGFIEVDTPILTSSTC--------EG-GAEPFSVDSEPGKYFGEPAYLTQSPQL-----YLK 86 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEE---SEESSSS--------SS-SSCSEEEEESTTEETTEEEEE-SSSHH-----HHH
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEcCceeecccc--------Cc-cccccccccchhhhcccceecCcChHH-----HHh
Confidence 4678999999999999999999999999965532 12 345677762111112247889888773 333
Q ss_pred hHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHH
Q 047998 197 WIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKF 259 (558)
Q Consensus 197 ~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l 259 (558)
.+.+. ++ =|+||||+|||.|....+ .-.-||+|.|.+..+++..+..+.+..++ .+++.+
T Consensus 87 ~ll~~-g~-~~vf~i~~~FR~E~~~~~-rHl~EFtmLE~e~a~~~~~~lm~~~e~li~~i~~~~ 147 (335)
T PF00152_consen 87 RLLAA-GL-ERVFEIGPCFRNEESRTR-RHLPEFTMLEWEMAFADYDDLMDLIEELIKYIFKEL 147 (335)
T ss_dssp HHHHT-TH-SEEEEEEEEE-BSSSCBT-TBSSEEEEEEEEEETSSHHHHHHHHHHHHHHHHHHH
T ss_pred hhccc-cc-hhhhheecceeccCcccc-cchhhhhhhhhccccCcHHHhHHHHHHHHHHHHHHH
Confidence 32221 22 389999999999998222 14459999999999999988777777766 455555
No 81
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=98.15 E-value=7.1e-05 Score=78.22 Aligned_cols=140 Identities=13% Similarity=0.099 Sum_probs=94.8
Q ss_pred cccCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhh-Hh---hhhcCccccCCceEEEEecCCcccc
Q 047998 102 ADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSF-IE---KEASHVEGFSPELALVTIGGGKELE 177 (558)
Q Consensus 102 ~d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l-~~---k~sgh~~~f~~Emy~~~~~g~~~l~ 177 (558)
+|.. .+| ..+.+-...-...+.+.+++.|...||+++..|.+++... |. ...+|-.-=-.+.|++.
T Consensus 93 ~d~t-~p~-~~~~~G~~HPl~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI~-------- 162 (339)
T PRK00488 93 IDVT-LPG-RRIELGSLHPITQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYID-------- 162 (339)
T ss_pred cccc-CCC-CCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEEc--------
Confidence 4443 344 3345556677899999999999999999999999986442 21 22334322122456662
Q ss_pred ccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHH
Q 047998 178 EKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIY 256 (558)
Q Consensus 178 e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y 256 (558)
+..+||....+...+.+++ ...|+|++.+|.|||.+....= ++.+|||.|+-+++.... -+++..++ .++
T Consensus 163 ~~~lLRThTSp~qir~L~~-----~~~Pirif~~G~VyR~D~~Dat--H~~~FhQleglvvd~~vt--f~dLK~~L~~fl 233 (339)
T PRK00488 163 DGLLLRTHTSPVQIRTMEK-----QKPPIRIIAPGRVYRNDSDDAT--HSPMFHQVEGLVVDKNIS--FADLKGTLEDFL 233 (339)
T ss_pred CCceeeccCcHHHHHHHHh-----cCCCeEEEEeeeEEEcCCCCcc--cCcceeeEEEEEEeCCCC--HHHHHHHHHHHH
Confidence 3689998888877766554 4689999999999999975222 677999999999875432 23444445 344
Q ss_pred HHHH
Q 047998 257 TKFA 260 (558)
Q Consensus 257 ~~l~ 260 (558)
+.++
T Consensus 234 ~~~f 237 (339)
T PRK00488 234 KAFF 237 (339)
T ss_pred HHHc
Confidence 5553
No 82
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=98.13 E-value=1.5e-05 Score=83.53 Aligned_cols=120 Identities=17% Similarity=0.169 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHH
Q 047998 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQ 196 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~ 196 (558)
-++++..|.+.+++.|.+.||.+|.||+|+.... .++.+-| .+.-- | +++.|+...+- +.+
T Consensus 23 ~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~----e~~~~~f-----~~~~~-~----~~~yL~~Spql-----~lk 83 (322)
T cd00776 23 IFRIRSEVLRAFREFLRENGFTEVHTPKITSTDT----EGGAELF-----KVSYF-G----KPAYLAQSPQL-----YKE 83 (322)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCC----CccCCcc-----ccccC-C----CcceecCCHHH-----HHH
Confidence 4578899999999999999999999999986331 1233333 22211 2 36788755542 223
Q ss_pred hHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeC-ChHHHHHHHHHHH-HHHHHH
Q 047998 197 WIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHA-TPEEAEKEAMQMI-DIYTKF 259 (558)
Q Consensus 197 ~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~-~~~~a~~e~~~il-~~y~~l 259 (558)
.+..- + =|+||+|+|||+|.+..+ ....||+|.|++.+++ +-++....+..++ .++..+
T Consensus 84 ~l~~~--~-~~vf~i~~~FR~E~~~~~-rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll~~~~~~l 144 (322)
T cd00776 84 MLIAA--L-ERVYEIGPVFRAEKSNTR-RHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRV 144 (322)
T ss_pred HHHHh--h-hhhEEeccccccCCCCcC-CCcceeeccceeeeccCCHHHHHHHHHHHHHHHHHHH
Confidence 22221 1 378999999999987432 2568999999999988 7777777777666 444444
No 83
>PRK06462 asparagine synthetase A; Reviewed
Probab=97.92 E-value=5.6e-05 Score=79.63 Aligned_cols=126 Identities=13% Similarity=0.042 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccc---cCCceEEEEecCCccccccccccCCCcHHHHHH
Q 047998 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEG---FSPELALVTIGGGKELEEKLVVRPTSETIVNHM 193 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~---f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~ 193 (558)
-++++..|.+.+|+.|.+.||.||.||+|.... ..++.+ -.-..+.+..- | .++.|+...+ +
T Consensus 29 il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~-----~~~~~~g~~~~~~~~~~~~~-~----~~~yL~~Spq-----l 93 (335)
T PRK06462 29 VLKVQSSILRYTREFLDGRGFVEVLPPIISPST-----DPLMGLGSDLPVKQISIDFY-G----VEYYLADSMI-----L 93 (335)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCC-----CCCCCccccCCccccccccC-C----CceeeccCHH-----H
Confidence 568899999999999999999999999997541 111111 00012222221 2 3678876654 2
Q ss_pred HHHhHhhcCCCCeEEEEEeeeeecCCCCC-CccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHHH
Q 047998 194 FTQWIHSYRDLPLLVNQWANVTRWEMRTK-PFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKFA 260 (558)
Q Consensus 194 ~~~~i~s~rdLPlkl~q~~~vfR~E~~~r-GllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l~ 260 (558)
+++-+..- + =|+||+|++||+|..-. +=...-||+|.|.+..+++-++....+..++ .++..+.
T Consensus 94 ~k~ll~~g--~-~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d~~dlm~~~e~lv~~i~~~~~ 159 (335)
T PRK06462 94 HKQLALRM--L-GKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGADLDEVMDLIEDLIKYLVKELL 159 (335)
T ss_pred HHHHHHhh--c-CcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 33333221 2 48999999999999832 1126779999999998888777777776666 4555443
No 84
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=97.90 E-value=3.5e-05 Score=80.13 Aligned_cols=117 Identities=15% Similarity=0.095 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHHh-
Q 047998 119 AIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQW- 197 (558)
Q Consensus 119 ~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~- 197 (558)
++|..|.+.+|+.|.++||.+|.||+|++...- -++.+ .|.+..-+..-+..+..|+-.++ ++.+.
T Consensus 2 ~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~---e~~~~-----~F~~~y~~~~~~~~~~yL~~Spq-----l~lk~l 68 (304)
T TIGR00462 2 RARARLLAAIRAFFAERGVLEVETPLLSPAPVT---DPHLD-----AFATEFLGPDGEGRPLYLQTSPE-----YAMKRL 68 (304)
T ss_pred hHHHHHHHHHHHHHHHCCCEEEECCeEecCCCC---CcCCc-----ceeeeccCCCCCCcceeeecCHH-----HHHHHH
Confidence 578999999999999999999999999866321 11222 33332211001123677776554 23332
Q ss_pred HhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH
Q 047998 198 IHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI 253 (558)
Q Consensus 198 i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il 253 (558)
+.+ .+ =|+|++|++||+|...+ ...-||+|.|++.++.+-++....+..++
T Consensus 69 l~~--g~-~rVfeigp~FRaE~~~~--rHl~EFtmLE~e~~~~d~~d~m~~~e~li 119 (304)
T TIGR00462 69 LAA--GS-GPIFQICKVFRNGERGR--RHNPEFTMLEWYRPGFDYHDLMDEVEALL 119 (304)
T ss_pred Hhc--cC-CCEEEEcCceeCCCCCC--CcccHHHhHHHHHHcCCHHHHHHHHHHHH
Confidence 222 23 48999999999999942 36779999999988877666665555544
No 85
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=97.90 E-value=6.4e-05 Score=84.18 Aligned_cols=120 Identities=15% Similarity=0.143 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEec--CCccccccccccCCCcHHHHHHH
Q 047998 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIG--GGKELEEKLVVRPTSETIVNHMF 194 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~--g~~~l~e~l~LRPt~e~~i~~~~ 194 (558)
-++++..|.+.+|+.|...||.||.||+|....- + | - .+ |.+... ++ +.++|+-..+ +|
T Consensus 137 ~lr~Rs~i~~~iR~ff~~~gFiEVeTP~L~~s~~---e-G----a-r~-f~vp~~~~~~----~~y~L~qSpQ-----ly 197 (583)
T TIGR00459 137 RLKLRHKVTKAVRNFLDQQGFLEIETPMLTKSTP---E-G----A-RD-YLVPSRVHKG----EFYALPQSPQ-----LF 197 (583)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeeccCCC---C-C----C-cc-eeeeeecCCC----ceeecCCCHH-----HH
Confidence 4678999999999999999999999999975321 1 1 1 11 222111 22 2455653322 34
Q ss_pred HHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHH
Q 047998 195 TQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKF 259 (558)
Q Consensus 195 ~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l 259 (558)
++.+... .+ =|+||+++|||+|..... |.-||+|.|++..+++.++....+..++ .+++.+
T Consensus 198 kq~l~v~-G~-ervfqI~~~FR~E~~~t~--r~pEFT~le~E~af~d~~dvm~~~E~li~~v~~~v 259 (583)
T TIGR00459 198 KQLLMVS-GV-DRYYQIARCFRDEDLRAD--RQPEFTQIDMEMSFMTQEDVMELIEKLVSHVFLEV 259 (583)
T ss_pred HHHHHhc-cc-CcEEEEcceeeCCCCCCC--CCcccCcceeeecCCCHHHHHHHHHHHHHHHHHHH
Confidence 4433211 23 389999999999999666 8899999999999998877777766666 455554
No 86
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=97.88 E-value=9.6e-05 Score=80.39 Aligned_cols=122 Identities=11% Similarity=0.105 Sum_probs=83.9
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHH
Q 047998 116 YGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFT 195 (558)
Q Consensus 116 ~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~ 195 (558)
.-++++..|.+.+|+.|.+.||.||.||+|..... -|+ .+.|.++.-++ ++.|+-..+ ++.
T Consensus 131 ~~~r~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~----eg~-----~~~f~v~~~~~-----~~yL~~Spq-----l~~ 191 (428)
T TIGR00458 131 AIFRIRSGVLESVREFLAEEGFIEVHTPKLVASAT----EGG-----TELFPITYFER-----EAFLGQSPQ-----LYK 191 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCceecCCC----CCC-----cceeeeEecCC-----cEEECcCHH-----HHH
Confidence 45788999999999999999999999999963321 122 33555554332 577765544 333
Q ss_pred HhH-hhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHHH
Q 047998 196 QWI-HSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKFA 260 (558)
Q Consensus 196 ~~i-~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l~ 260 (558)
+.+ .+ .+ =|+||+|++||+|..... .-.-||+|.|++..+++.++....+..++ .++..+.
T Consensus 192 q~li~~--g~-~rVf~i~~~FR~E~~~t~-rHl~EFt~lE~e~a~~~~~dlm~~~e~li~~i~~~~~ 254 (428)
T TIGR00458 192 QQLMAA--GF-ERVYEIGPIFRAEEHNTH-RHLNEATSIDIEMAFEDHHDVMDILEELVVRVFEDVP 254 (428)
T ss_pred HHHHhc--cc-CcEEEEecccccCCCCCc-cchheeeEeeeeeccCCHHHHHHHHHHHHHHHHHHHH
Confidence 432 22 23 489999999999999432 13359999999999888877766666655 4444443
No 87
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=0.00017 Score=75.10 Aligned_cols=203 Identities=15% Similarity=0.150 Sum_probs=117.2
Q ss_pred CCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhh-----hhcCccccCCceEEEEecCCcccccccc
Q 047998 107 VRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEK-----EASHVEGFSPELALVTIGGGKELEEKLV 181 (558)
Q Consensus 107 vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k-----~sgh~~~f~~Emy~~~~~g~~~l~e~l~ 181 (558)
..|. ...|.+......+.+.+++.|...||+++..|.++ .+.|.- ...|-..=-.+.|++++.. +.+.
T Consensus 100 lp~~-~~~~G~~Hpl~~~~e~i~~iF~~mGF~~~~gp~IE-~d~~NFDaLn~P~dHPARdmqDTFy~~~~~-----~~~l 172 (335)
T COG0016 100 LPGR-RIYPGSLHPLTQTIEEIEDIFLGMGFTEVEGPEIE-TDFYNFDALNIPQDHPARDMQDTFYLKDDR-----EKLL 172 (335)
T ss_pred CCCc-cCCCCCcChHHHHHHHHHHHHHHcCceeccCCccc-ccccchhhhcCCCCCCcccccceEEEcCCC-----Ccee
Confidence 3454 56677888899999999999999999999999654 333322 2234332233467777632 1578
Q ss_pred ccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHHH
Q 047998 182 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKFA 260 (558)
Q Consensus 182 LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l~ 260 (558)
||=-.++.-++.+.+. ..-|+|++-.|.|||+|.--.= .+-+|+|.|+-+++-.-- -+.+..++ +++++++
T Consensus 173 LRTHTs~vq~R~l~~~----~~~P~k~~~~grvyR~D~~DaT--Hs~~FhQiEGlvvd~~~s--~~~Lkg~L~~f~~~~f 244 (335)
T COG0016 173 LRTHTSPVQARTLAEN----AKIPIKIFSPGRVYRNDTVDAT--HSPEFHQIEGLVVDKNIS--FADLKGTLEEFAKKFF 244 (335)
T ss_pred ecccCcHhhHHHHHhC----CCCCceEecccceecCCCCCcc--cchheeeeEEEEEeCCcc--HHHHHHHHHHHHHHhc
Confidence 9855555445555443 2239999999999999966111 456999999977743322 23344444 4555555
Q ss_pred HhhCCceEEeecCCchhhccCCCcceEEEEEEcC-cccee---ecceEecCcccccccCeEEeCCCCceeeEeeeccch-
Q 047998 261 YEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD-KRALQ---AGTSHNLGQNFSLAFGTQFTDENGQRQHVWQTSWAI- 335 (558)
Q Consensus 261 ~~~l~ipv~~g~k~~~ekf~Ga~~~~~ie~~~~d-gr~lq---~gti~~Lg~~~s~~f~i~y~d~~g~~~~v~~~s~Gi- 335 (558)
.....+.+.. .-|+=-.-++.++++.+. ++-++ ||.+| .+.-+..|+ ....+.+..||+
T Consensus 245 g~~~~vRfrp------syFPFTEPS~Evdv~~~~~~~WlEi~G~Gmv~---P~VL~~~G~-------~~~~~~GfAfGlG 308 (335)
T COG0016 245 GEDVKVRFRP------SYFPFTEPSAEVDVYCPGCGGWLEILGCGMVH---PNVLEAVGI-------DPEEYSGFAFGLG 308 (335)
T ss_pred CCCcceEeec------CCCCCCCCeEEEEEEEcCCCCEEEEecccccC---HHHHHhcCC-------CCCcceEEEEeec
Confidence 3211221111 111111123456655532 33344 35555 233344443 112344456777
Q ss_pred HHHHH
Q 047998 336 STRFV 340 (558)
Q Consensus 336 ~eRli 340 (558)
+||+.
T Consensus 309 lERlA 313 (335)
T COG0016 309 LERLA 313 (335)
T ss_pred HHHHH
Confidence 99985
No 88
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=2.4e-05 Score=78.59 Aligned_cols=121 Identities=17% Similarity=0.078 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHHh
Q 047998 118 YAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQW 197 (558)
Q Consensus 118 ~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~ 197 (558)
...|.+|++.+|..|...||.||.||.|...-.- --|+..|.-+...-.+.++ .++.|.+..|-.+-++.+..
T Consensus 16 ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vt---d~hL~~F~Te~~~~~~~~~----~~l~L~TSPEy~mKrLLAag 88 (322)
T COG2269 16 LLKRAAIIAAIRRFFAERGVLEVETPALSVAPVT---DIHLHPFETEFLGPGGAKG----KPLWLHTSPEYHMKRLLAAG 88 (322)
T ss_pred HHHHHHHHHHHHHHHHHcCceEecchHhhcCCCC---ccceeeeeeEEeccCcccc----ceeeeecCcHHHHHHHHHcc
Confidence 5679999999999999999999999998433221 2266667665544333332 47889888775444444332
Q ss_pred HhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHHH
Q 047998 198 IHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMID 254 (558)
Q Consensus 198 i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il~ 254 (558)
-=.+||+|.|||++.. |=+---||+|.|-|.+|++-.....|+..++.
T Consensus 89 -------~~~ifql~kvfRN~E~--G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~ 136 (322)
T COG2269 89 -------SGPIFQLGKVFRNEEM--GRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQ 136 (322)
T ss_pred -------CCcchhhhHHHhcccc--cccCCCceeEeeeeccCCcHHHHHHHHHHHHH
Confidence 2358999999999884 42233499999999999998887777776653
No 89
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=97.86 E-value=0.00012 Score=77.08 Aligned_cols=119 Identities=14% Similarity=0.120 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEE-ecCCccccccccccCCCcHHHHHHHHH
Q 047998 118 YAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVT-IGGGKELEEKLVVRPTSETIVNHMFTQ 196 (558)
Q Consensus 118 ~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~-~~g~~~l~e~l~LRPt~e~~i~~~~~~ 196 (558)
.+++..|.+.+|+.|...||.||.||+|.+..- .++ .+.|.+. +..+ .+.+|+-.++ ++.+
T Consensus 8 l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~----~~~-----~~~f~~~~~~~~----~~~yL~~Spq-----l~~k 69 (329)
T cd00775 8 FIVRSKIISYIRKFLDDRGFLEVETPMLQPIAG----GAA-----ARPFITHHNALD----MDLYLRIAPE-----LYLK 69 (329)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCccccCCC----Ccc-----ceeEEeccCCCC----cceeeccCHH-----HHHH
Confidence 578899999999999999999999999975531 111 2334332 2222 3677764443 2333
Q ss_pred hH-hhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHH
Q 047998 197 WI-HSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKF 259 (558)
Q Consensus 197 ~i-~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l 259 (558)
.+ .+ .+ =++||+|+|||.|...+ ...-||+|.|.+..+.+..+....+..++ .+++.+
T Consensus 70 ~ll~~--g~-~~vf~i~~~FR~E~~~~--rHl~EFt~le~e~~~~~~~~~m~~~e~li~~i~~~~ 129 (329)
T cd00775 70 RLIVG--GF-ERVYEIGRNFRNEGIDL--THNPEFTMIEFYEAYADYNDMMDLTEDLFSGLVKKI 129 (329)
T ss_pred HHHhc--CC-CcEEEEeccccCCCCCC--CCCCceEEEEEeeecCCHHHHHHHHHHHHHHHHHHH
Confidence 33 22 22 48999999999999843 37789999999998888777777777666 455444
No 90
>PLN02903 aminoacyl-tRNA ligase
Probab=97.82 E-value=0.00013 Score=82.21 Aligned_cols=121 Identities=15% Similarity=0.141 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHHHHHHHH-cCCeeeecCccccHhhHhhhhcCccccCCceEEEEec-CCccccccccccCCCcHHHHHHH
Q 047998 117 GYAIWEAIQDYLNVKFKE-TGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIG-GGKELEEKLVVRPTSETIVNHMF 194 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~~-~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~-g~~~l~e~l~LRPt~e~~i~~~~ 194 (558)
-.+++..|.+.+|+.|.. .||.||.||+|....- + +- .+.+..... .| ..++|+-..+ +|
T Consensus 202 ~lr~Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st~---e-----Ga-rdf~v~~~~~~g----~~y~L~qSPQ-----ly 263 (652)
T PLN02903 202 NLRLRHRVVKLIRRYLEDVHGFVEIETPILSRSTP---E-----GA-RDYLVPSRVQPG----TFYALPQSPQ-----LF 263 (652)
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEECCeeccCCC---C-----CC-cccEEeeecCCC----cccccCCCHH-----HH
Confidence 467889999999999986 9999999999964321 1 11 133333221 12 2456653322 34
Q ss_pred HHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHH
Q 047998 195 TQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKF 259 (558)
Q Consensus 195 ~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l 259 (558)
++.+... .+ =|+|||++|||+|..... |.-||+|.|++..+++.++....+..++ .+++.+
T Consensus 264 kQ~Lm~~-G~-~RvFqIa~~FR~E~~~t~--RhpEFTqLE~E~sf~d~~dvm~~~E~li~~v~~~~ 325 (652)
T PLN02903 264 KQMLMVS-GF-DRYYQIARCFRDEDLRAD--RQPEFTQLDMELAFTPLEDMLKLNEDLIRQVFKEI 325 (652)
T ss_pred HHHHHhc-cC-CcEEEEehhhccCCCCCC--cccceeeeeeeecCCCHHHHHHHHHHHHHHHHHHH
Confidence 4443211 22 389999999999999555 8899999999999898887777776666 455544
No 91
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=97.82 E-value=9.2e-05 Score=83.35 Aligned_cols=121 Identities=15% Similarity=0.115 Sum_probs=82.2
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEe--cCCccccccccccCCCcHHHHHH
Q 047998 116 YGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTI--GGGKELEEKLVVRPTSETIVNHM 193 (558)
Q Consensus 116 ~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~--~g~~~l~e~l~LRPt~e~~i~~~ 193 (558)
.-.+++..|.+.+|+.|.+.||.||.||+|.+..- .| - .+ |.+.. ..| ..++|+ .|-. +
T Consensus 139 ~~l~~Rs~i~~~iR~ff~~~gFiEV~TP~L~~s~~----eg----a-~~-f~v~~~~~~~----~~~~L~-qSpq----l 199 (588)
T PRK00476 139 KNLKLRSKVTSAIRNFLDDNGFLEIETPILTKSTP----EG----A-RD-YLVPSRVHPG----KFYALP-QSPQ----L 199 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeeecCCC----CC----C-cc-ceecccccCC----ceeecC-CCHH----H
Confidence 34678899999999999999999999999975421 11 1 11 22221 122 245564 3321 3
Q ss_pred HHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHH
Q 047998 194 FTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKF 259 (558)
Q Consensus 194 ~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l 259 (558)
|++.+... .+ =|+||+|+|||+|..... |.-||+|.|++..+++.++....+..++ .+++.+
T Consensus 200 ~kq~l~~~-g~-~rvfqi~~~FR~E~~~~~--r~~EFt~le~e~af~~~~dvm~~~E~li~~i~~~~ 262 (588)
T PRK00476 200 FKQLLMVA-GF-DRYYQIARCFRDEDLRAD--RQPEFTQIDIEMSFVTQEDVMALMEGLIRHVFKEV 262 (588)
T ss_pred HHHHHHhc-cc-CceEEEeceeecCCCCCC--cCcccccceeeecCCCHHHHHHHHHHHHHHHHHHH
Confidence 44432211 23 389999999999998555 7779999999999998888777777666 455544
No 92
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=97.78 E-value=0.00019 Score=78.37 Aligned_cols=121 Identities=12% Similarity=0.147 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHH
Q 047998 116 YGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFT 195 (558)
Q Consensus 116 ~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~ 195 (558)
.-++++..|.+.+|+.|.+.||.||.||+|..... .|+ .+.|.+.--| .++.|+-..+ ++.
T Consensus 134 ~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~----eg~-----~~~f~~~~~~-----~~~~L~~Spq-----l~~ 194 (437)
T PRK05159 134 AIFKIRSEVLRAFREFLYENGFTEIFTPKIVASGT----EGG-----AELFPIDYFE-----KEAYLAQSPQ-----LYK 194 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCcccccCC----CCC-----cceEeEEecC-----CceEecCCHH-----HHH
Confidence 45788999999999999999999999999953211 122 2245443322 3678876554 334
Q ss_pred HhHhhcCCCCeEEEEEeeeeecCCCCCCccc-cceEEEecceeeeCC-hHHHHHHHHHHH-HHHHHH
Q 047998 196 QWIHSYRDLPLLVNQWANVTRWEMRTKPFVR-TLEFLWQEGHTAHAT-PEEAEKEAMQMI-DIYTKF 259 (558)
Q Consensus 196 ~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR-~REF~q~d~h~~~~~-~~~a~~e~~~il-~~y~~l 259 (558)
+.+..- .+ =|+||++++||+|..... | .-||+|.|++..+.+ .++....+..++ .+++.+
T Consensus 195 q~l~~~-g~-~rVf~i~~~FR~E~~~t~--rHl~EFt~lE~e~a~~~~~~~lm~~~e~lv~~i~~~~ 257 (437)
T PRK05159 195 QMMVGA-GF-ERVFEIGPVFRAEEHNTS--RHLNEYTSIDVEMGFIDDHEDVMDLLENLLRYMYEDV 257 (437)
T ss_pred HHHHhc-CC-CcEEEEeceeeCCCCCCc--ccchhhheeeeeeeecccHHHHHHHHHHHHHHHHHHH
Confidence 443321 23 389999999999999433 4 459999999998887 777777777666 455554
No 93
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=97.71 E-value=0.00023 Score=79.82 Aligned_cols=115 Identities=18% Similarity=0.102 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHHh
Q 047998 118 YAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQW 197 (558)
Q Consensus 118 ~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~ 197 (558)
++++..|.+.+|+.|.+.||.||.||+|.+.. .|. ...-| .++.. .++.+++||-..+-. .+.-
T Consensus 253 fr~RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~~-----GGA----~a~PF-~T~~n--~~d~~lYLriSpEL~----lKrL 316 (585)
T PTZ00417 253 FITRTKIINYLRNFLNDRGFIEVETPTMNLVA-----GGA----NARPF-ITHHN--DLDLDLYLRIATELP----LKML 316 (585)
T ss_pred HHHHHHHHHHHHHHHHHCCeEEEeCCeeeccC-----Ccc----cceeE-Eeccc--CCCcceEEeecHHHH----HHHH
Confidence 56889999999999999999999999996541 121 01112 12211 123578888665522 2222
Q ss_pred HhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH
Q 047998 198 IHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI 253 (558)
Q Consensus 198 i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il 253 (558)
+.. .+ =|+|++|++||+|...+ ...-||+|.|.+.++++-.+....+..++
T Consensus 317 lvg--G~-~rVfeIgp~FRnE~~~~--rHnpEFTmlE~y~ay~dy~dlM~l~E~Li 367 (585)
T PTZ00417 317 IVG--GI-DKVYEIGKVFRNEGIDN--THNPEFTSCEFYWAYADFYDLIKWSEDFF 367 (585)
T ss_pred HHh--CC-CCEEEEcccccCCCCCC--CccceeeeeeeeeecCCHHHHHHHHHHHH
Confidence 222 22 38999999999999732 25569999999999887777766665555
No 94
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=97.68 E-value=0.00022 Score=80.43 Aligned_cols=115 Identities=14% Similarity=0.049 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHHh
Q 047998 118 YAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQW 197 (558)
Q Consensus 118 ~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~ 197 (558)
++++..|.+.+|+.|...||.||.||+|.+.. .|. ....|.+.+.. ++.+++||-..+ +|.+.
T Consensus 233 fr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~-----~ga----~a~pF~t~~n~---~~~~~yL~~SPE-----LylKr 295 (659)
T PTZ00385 233 IKKRHVMLQALRDYFNERNFVEVETPVLHTVA-----SGA----NAKSFVTHHNA---NAMDLFLRVAPE-----LHLKQ 295 (659)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEeeCCEeeccC-----CCC----CccceEeeccc---CCCCEEecCChH-----HHHHH
Confidence 56889999999999999999999999995431 121 12234332211 123677876655 33333
Q ss_pred HhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH
Q 047998 198 IHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI 253 (558)
Q Consensus 198 i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il 253 (558)
+... .+ =|+|++|++||+|...+- ..-||+|.|.+.++.+..+....+..++
T Consensus 296 Livg-G~-erVyeIg~~FRnE~~~~r--H~pEFTmlE~y~a~~d~~d~m~l~E~li 347 (659)
T PTZ00385 296 CIVG-GM-ERIYEIGKVFRNEDADRS--HNPEFTSCEFYAAYHTYEDLMPMTEDIF 347 (659)
T ss_pred Hhhc-cc-CCEEEEeceecCCCCCCC--ccccccceeeeeecCCHHHHHHHHHHHH
Confidence 2211 22 389999999999998432 7779999999999998888777766665
No 95
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=97.68 E-value=0.0004 Score=76.84 Aligned_cols=122 Identities=14% Similarity=0.099 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHH
Q 047998 116 YGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFT 195 (558)
Q Consensus 116 ~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~ 195 (558)
.-++++..|.+.+|+.|...||.||.||+|.+.. .| -..+.|.+.... ++.+++|+-.++ ++.
T Consensus 170 ~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~-----~G----a~a~pF~t~~~~---~~~~~yL~~Spq-----l~l 232 (491)
T PRK00484 170 ETFRKRSKIISAIRRFLDNRGFLEVETPMLQPIA-----GG----AAARPFITHHNA---LDIDLYLRIAPE-----LYL 232 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCceeccC-----CC----ccceeeeecccc---CCCceEeccCHH-----HHH
Confidence 3467899999999999999999999999996432 22 111233321110 123577774443 333
Q ss_pred HhH-hhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHH
Q 047998 196 QWI-HSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKF 259 (558)
Q Consensus 196 ~~i-~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l 259 (558)
+.+ .+ .+ =|+||+|++||+|...+ -+.-||+|.|++..+++.++....+..++ .+.+.+
T Consensus 233 k~l~v~--g~-~rVfei~~~FR~E~~~~--rH~pEFt~lE~e~a~~d~~d~m~~~E~li~~i~~~~ 293 (491)
T PRK00484 233 KRLIVG--GF-ERVYEIGRNFRNEGIDT--RHNPEFTMLEFYQAYADYNDMMDLTEELIRHLAQAV 293 (491)
T ss_pred HHHHhc--cC-CcEEEEecceecCCCCC--CcCCceEEEEEEEecCCHHHHHHHHHHHHHHHHHHH
Confidence 332 22 22 48999999999999943 37779999999998888777666666555 344443
No 96
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=97.63 E-value=0.00042 Score=75.92 Aligned_cols=126 Identities=17% Similarity=0.087 Sum_probs=82.5
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecC----CccccccccccCCCcHHHH
Q 047998 116 YGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGG----GKELEEKLVVRPTSETIVN 191 (558)
Q Consensus 116 ~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g----~~~l~e~l~LRPt~e~~i~ 191 (558)
.-.+++..|.+.+|+.|.+.||.||.||+|....- .|+ .+.|.+.... +.-.+.+++|+...+-
T Consensus 131 ~~l~~Rs~i~~~iR~f~~~~gf~EV~TP~L~~~~~----eg~-----~~~F~v~~~~~~~~~~~~~~~~~L~~Spql--- 198 (450)
T PRK03932 131 AVMRIRNTLAQAIHEFFNENGFVWVDTPIITASDC----EGA-----GELFRVTTLDLDFSKDFFGKEAYLTVSGQL--- 198 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEecCCceeccCC----CCC-----CCceEeecccccccccccCCCcccccCHHH---
Confidence 45788999999999999999999999999975421 111 2356553210 0001236778766542
Q ss_pred HHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHH
Q 047998 192 HMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKF 259 (558)
Q Consensus 192 ~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l 259 (558)
+.+.+.+ .+ =|+||++++||+|..-.. .-.-||+|.|++..+++.++....+..++ .+...+
T Consensus 199 --~lq~l~~--g~-~rVf~i~~~FR~E~~~t~-rHl~EFt~lE~e~~~~~~~~~m~~~e~li~~~~~~~ 261 (450)
T PRK03932 199 --YAEAYAM--AL-GKVYTFGPTFRAENSNTR-RHLAEFWMIEPEMAFADLEDNMDLAEEMLKYVVKYV 261 (450)
T ss_pred --HHHHHHh--cc-CCeEEeeeccccCCCCCc-cccccccccceEEeccCHHHHHHHHHHHHHHHHHHH
Confidence 2222222 23 389999999999987222 12359999999999888777666666555 344443
No 97
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=97.62 E-value=0.00028 Score=80.45 Aligned_cols=120 Identities=15% Similarity=0.051 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEe-cCCccccccccccCCCcHHHHHHH
Q 047998 116 YGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTI-GGGKELEEKLVVRPTSETIVNHMF 194 (558)
Q Consensus 116 ~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~-~g~~~l~e~l~LRPt~e~~i~~~~ 194 (558)
.-++++..|.+.+|+.|.+.||.||.||+|....- ++ +.+.+.... ..+ ..++|+- |. .+|
T Consensus 154 ~~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~--------eG-Ar~~~~p~~~~~~----~~y~L~q-SP----Qly 215 (706)
T PRK12820 154 DHLAKRHRIIKCARDFLDSRGFLEIETPILTKSTP--------EG-ARDYLVPSRIHPK----EFYALPQ-SP----QLF 215 (706)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCC--------CC-CcceEEeeecCCC----cceecCC-CH----HHH
Confidence 45788999999999999999999999999965321 11 112211111 122 2345553 32 245
Q ss_pred HHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHH
Q 047998 195 TQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYT 257 (558)
Q Consensus 195 ~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~ 257 (558)
++.+... .+ =|+|||++|||+|..-.- |.-||+|.|++..+.+.++....+..++ .+++
T Consensus 216 kq~lm~~-G~-~rvfqI~~~FR~E~~~t~--r~pEFT~LE~E~af~d~~dvm~l~E~li~~v~~ 275 (706)
T PRK12820 216 KQLLMIA-GF-ERYFQLARCFRDEDLRPN--RQPEFTQLDIEASFIDEEFIFELIEELTARMFA 275 (706)
T ss_pred HHHHHhc-cC-CcEEEEechhcCCCCCCC--cCccccccceeeccCCHHHHHHHHHHHHHHHHH
Confidence 5543211 22 389999999999999444 7789999999999898888777776666 3443
No 98
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=97.61 E-value=0.00032 Score=77.69 Aligned_cols=121 Identities=14% Similarity=0.102 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHH
Q 047998 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQ 196 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~ 196 (558)
-++++..|.+.+|+.|...||.||.||+|.+.. .|. .-+.|.+... .++.+++||-..+ ++.+
T Consensus 171 ~~r~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~-----gga----~a~pF~t~~~---~~~~~~yLriSpE-----LylK 233 (496)
T TIGR00499 171 TFLVRSKIIKAIRRFLDDRGFIEVETPMLQVIP-----GGA----NARPFITHHN---ALDMDLYLRIAPE-----LYLK 233 (496)
T ss_pred HHHHHHHHHHHHHHHHHHCcCEEEeCCeeecCC-----CCc----cceeEEeecc---cCCCceEEecCHH-----HHHH
Confidence 456888999999999999999999999996431 121 1123333221 1124678886655 3333
Q ss_pred h-HhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHH
Q 047998 197 W-IHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKF 259 (558)
Q Consensus 197 ~-i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l 259 (558)
. +.+ .+ =|+|++|++||+|.... ...-||+|.|++.++++-.+....+..++ .+.+.+
T Consensus 234 rlivg--G~-~rVfeIg~~FRnE~~~~--rH~pEFTmlE~y~a~~d~~dlm~~~E~li~~i~~~l 293 (496)
T TIGR00499 234 RLIVG--GF-EKVYEIGRNFRNEGVDT--THNPEFTMIEFYQAYADYEDLMDLTENLFKFLAQEL 293 (496)
T ss_pred HHHhC--CC-CceEEEecceecCCCCC--cccchhheeehhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 3 222 22 38999999999999943 36679999999998888777766666555 344444
No 99
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=97.57 E-value=0.00043 Score=75.84 Aligned_cols=125 Identities=18% Similarity=0.177 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecC----CccccccccccCCCcHHHHH
Q 047998 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGG----GKELEEKLVVRPTSETIVNH 192 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g----~~~l~e~l~LRPt~e~~i~~ 192 (558)
-++++..|.+.+++.|.+.||.||.||+|....- ++ ..++|.+.... +.-.+.+.+|+-..+
T Consensus 135 ~lr~Rs~i~~~~r~~~~~~gf~eV~TP~l~~~~~--------eg-~~~~F~v~~~~~~~~~~~~~~~~yL~~Spq----- 200 (453)
T TIGR00457 135 VMRVRNALSQAIHRYFQENGFTWVSPPILTSNDC--------EG-AGELFRVSTDGIDFSQDFFGKEAYLTVSGQ----- 200 (453)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEecCCeEeecCC--------CC-CCCceEecccccccchhccCCccccccCHH-----
Confidence 3689999999999999999999999999965431 11 12345443100 000113566665433
Q ss_pred HHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHH
Q 047998 193 MFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKF 259 (558)
Q Consensus 193 ~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l 259 (558)
++.+.+.+ .+ =|+||++++||+|..-.. .-.-||+|.|++..+++.++....+..++ .+++.+
T Consensus 201 l~lq~l~~--g~-~rVf~i~~~FR~E~~~t~-rHl~EFt~le~e~~~~~~~dvm~~~E~lv~~i~~~~ 264 (453)
T TIGR00457 201 LYLETYAL--AL-SKVYTFGPTFRAEKSNTS-RHLSEFWMIEPEMAFANLNDLLQLAETLIKYIIKAV 264 (453)
T ss_pred HHHHHHhh--cc-cCceEeeeccccCCCCCC-cCcchhccceeeeecCCHHHHHHHHHHHHHHHHHHH
Confidence 33333322 33 389999999999998322 02359999999998888777766666655 344444
No 100
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=97.56 E-value=0.00053 Score=71.03 Aligned_cols=110 Identities=13% Similarity=0.069 Sum_probs=77.0
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCeeeecCccccH-hhHhhh---hcCccccCCceEEEEecCCccccccccccCCCcHHHH
Q 047998 116 YGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPY-SFIEKE---ASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVN 191 (558)
Q Consensus 116 ~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~-~l~~k~---sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~ 191 (558)
.+..-...+.+.+++.|...||+|+.+|.|++. ..|..- .+|-..-..+.+.+. +..+||++..+++.
T Consensus 69 g~~~p~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~--------d~~vLRtsl~p~ll 140 (294)
T TIGR00468 69 GSLHPLTRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYIK--------DRLLLRTHTTAVQL 140 (294)
T ss_pred CCcCHHHHHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceeec--------CCcceecccHHHHH
Confidence 355567788888999999999999999999877 233221 111100000234443 25799999999888
Q ss_pred HHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeee
Q 047998 192 HMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAH 239 (558)
Q Consensus 192 ~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~ 239 (558)
+.++...+ .|+|++++|+|||.+..... +..||+|.++-+.+
T Consensus 141 ~~l~~N~~----~pirlFEiGrVfr~d~~d~~--~~pef~ql~gl~~~ 182 (294)
T TIGR00468 141 RTMEENEK----PPIRIFSPGRVFRNDTVDAT--HLPEFHQVEGLVID 182 (294)
T ss_pred HHHHhcCC----CCceEEEecceEEcCCCCCc--cCChhhEEEEEEEC
Confidence 87765432 79999999999999864222 34499999988775
No 101
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=97.56 E-value=0.00034 Score=77.53 Aligned_cols=114 Identities=13% Similarity=0.073 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhc-CccccCCceEEEEecCCccccccccccCCCcHHHHHHHH
Q 047998 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEAS-HVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFT 195 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sg-h~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~ 195 (558)
-++++..|.+.+|+.|...||.||.||+|.+.. .| +..- | .++.. .++.+++||=..+ ++.
T Consensus 183 ~~r~Rs~i~~~iR~f~~~~gFiEVeTPiL~~~~-----gGa~a~p-----F-~t~~~--~~~~~~yL~~SpE-----Lyl 244 (505)
T PRK12445 183 TFVVRSKILAAIRQFMVARGFMEVETPMMQVIP-----GGASARP-----F-ITHHN--ALDLDMYLRIAPE-----LYL 244 (505)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCeeEecC-----CCCcccc-----e-ecccc--cCCcceeeecCHH-----HHH
Confidence 467899999999999999999999999996531 12 1111 2 12111 1124677775554 233
Q ss_pred Hh-HhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH
Q 047998 196 QW-IHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI 253 (558)
Q Consensus 196 ~~-i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il 253 (558)
+. +.+ .+ =|+|++|++||+|..++ ...-||+|.|++..+++-.+....+..++
T Consensus 245 Krlivg--G~-~rVfeIg~~FRnE~~~~--rH~pEFTmlE~y~a~~d~~d~m~l~E~li 298 (505)
T PRK12445 245 KRLVVG--GF-ERVFEINRNFRNEGISV--RHNPEFTMMELYMAYADYHDLIELTESLF 298 (505)
T ss_pred HHHHhc--cC-CcEEEEehhccCCCCCC--CcCcccceeeeeeecCCHHHHHHHHHHHH
Confidence 33 322 22 38999999999999843 37779999999999888777776666665
No 102
>PLN02502 lysyl-tRNA synthetase
Probab=97.54 E-value=0.00056 Score=76.40 Aligned_cols=120 Identities=14% Similarity=0.112 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHHh
Q 047998 118 YAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQW 197 (558)
Q Consensus 118 ~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~ 197 (558)
++++..|.+.+|+.|...||.||.||+|.+.. .|. ...-|...+. .++.+++||=.++- +.+.
T Consensus 229 ~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~-----gGA----~a~pF~t~~n---~~~~~~yL~~Spel-----~lK~ 291 (553)
T PLN02502 229 FRTRAKIISYIRRFLDDRGFLEVETPMLNMIA-----GGA----AARPFVTHHN---DLNMDLYLRIATEL-----HLKR 291 (553)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCeeeccC-----CCc----cccceeeecc---cCCcceeeecCHHH-----HHHH
Confidence 46888999999999999999999999996532 121 1112322111 12347888766552 3222
Q ss_pred -HhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHH
Q 047998 198 -IHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKF 259 (558)
Q Consensus 198 -i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l 259 (558)
+.+ .+ =|+|++|++||+|.... ...-||+|.|++..+++-.+....+..++ .+++.+
T Consensus 292 L~v~--g~-~rVfeIg~~FRnE~~~~--rH~pEFtmlE~y~a~~d~~dlm~~~E~li~~i~~~v 350 (553)
T PLN02502 292 LVVG--GF-ERVYEIGRQFRNEGIST--RHNPEFTTCEFYQAYADYNDMMELTEEMVSGMVKEL 350 (553)
T ss_pred HHHh--cc-CCEEEEcCeeeCCCCCC--ccccceeehhhhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 222 12 38999999999999843 37779999999998888777776666665 444444
No 103
>PLN02850 aspartate-tRNA ligase
Probab=97.53 E-value=0.00038 Score=77.53 Aligned_cols=120 Identities=15% Similarity=0.127 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHH
Q 047998 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQ 196 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~ 196 (558)
-++++..|.+.+|+.|...||.||.||+|....- ++- .+.|.+..-| .+++|+-..+ ++++
T Consensus 224 ifrirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~--------egg-a~~F~v~yf~-----~~~~L~qSpq-----l~kq 284 (530)
T PLN02850 224 IFRIQSQVCNLFREFLLSKGFVEIHTPKLIAGAS--------EGG-SAVFRLDYKG-----QPACLAQSPQ-----LHKQ 284 (530)
T ss_pred HHHHHHHHHHHHHHHHHHCCcEEEeCCccccCCC--------ccc-cceeeeccCC-----cceecCCCHH-----HHHH
Confidence 3577889999999999999999999999954321 121 2356554433 3678875543 3444
Q ss_pred hHhhcCCCCeEEEEEeeeeecCCC-CCCccccceEEEeccee-eeCChHHHHHHHHHHH-HHHHHH
Q 047998 197 WIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEFLWQEGHT-AHATPEEAEKEAMQMI-DIYTKF 259 (558)
Q Consensus 197 ~i~s~rdLPlkl~q~~~vfR~E~~-~rGllR~REF~q~d~h~-~~~~~~~a~~e~~~il-~~y~~l 259 (558)
.+.. .++ =|+|+||+|||+|.+ ++= -.-||+|.|++. |..+-.+....+..++ .++..+
T Consensus 285 ~li~-~g~-~rVfeIgp~FRaE~s~t~R--Hl~EFt~Le~Em~~~~~y~evm~~~E~ll~~i~~~l 346 (530)
T PLN02850 285 MAIC-GDF-RRVFEIGPVFRAEDSFTHR--HLCEFTGLDLEMEIKEHYSEVLDVVDELFVAIFDGL 346 (530)
T ss_pred HHHH-hcC-CceEEEecccccCCCCCCc--cchhhccchhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 3221 133 389999999999997 331 346999999994 4444455555555444 344433
No 104
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=0.00069 Score=73.94 Aligned_cols=122 Identities=16% Similarity=0.157 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEe--cCCccccccccccCCCcHHHHHH
Q 047998 116 YGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTI--GGGKELEEKLVVRPTSETIVNHM 193 (558)
Q Consensus 116 ~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~--~g~~~l~e~l~LRPt~e~~i~~~ 193 (558)
.-..++.++...+|+.|...||.+|.||+|... +- +|-.+ |.|-. ..| +-|+| |-|- .+
T Consensus 139 ~~l~lR~kv~~~iR~~ld~~gF~EiETPiLtkS------TP--EGARD--fLVPSRv~~G----~FYAL-PQSP----Ql 199 (585)
T COG0173 139 KNLKLRSKVTKAIRNFLDDQGFLEIETPILTKS------TP--EGARD--FLVPSRVHPG----KFYAL-PQSP----QL 199 (585)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCeEeecCccccC------CC--ccccc--cccccccCCC----ceeec-CCCH----HH
Confidence 356789999999999999999999999999422 21 11111 22211 112 24444 5543 34
Q ss_pred HHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHHH
Q 047998 194 FTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKFA 260 (558)
Q Consensus 194 ~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l~ 260 (558)
|++-+.-- .+ =|+|||++|||+|-.-.- |.=||+|.|+++-+++.++...-+..|+ .+++.+.
T Consensus 200 fKQLLMvs-Gf-dRYyQIarCFRDEDlRaD--RQPEFTQiD~EmSF~~~edv~~~~E~l~~~vf~~~~ 263 (585)
T COG0173 200 FKQLLMVA-GF-DRYYQIARCFRDEDLRAD--RQPEFTQIDLEMSFVDEEDVMELIEKLLRYVFKEVK 263 (585)
T ss_pred HHHHHHHh-cc-cceeeeeeeecccccccc--cCCcceeEeEEeecCCHHHHHHHHHHHHHHHHHHhc
Confidence 55554311 11 389999999999998555 7779999999999999988877777666 5666553
No 105
>PLN02603 asparaginyl-tRNA synthetase
Probab=97.51 E-value=0.00049 Score=76.94 Aligned_cols=124 Identities=18% Similarity=0.107 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEec-------CCcc-------------cc
Q 047998 118 YAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIG-------GGKE-------------LE 177 (558)
Q Consensus 118 ~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~-------g~~~-------------l~ 177 (558)
++++..|...+++.|...||.+|.||+|...+- +| +.|+|.++.. +|.. .+
T Consensus 226 ~RiRS~i~~air~ff~~~gF~eV~TPiLt~s~~--------EG-A~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~ 296 (565)
T PLN02603 226 ARVRNALAYATHKFFQENGFVWVSSPIITASDC--------EG-AGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWS 296 (565)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCeecccCC--------Cc-cccCceeeeccccccccccccccccccCcccccccc
Confidence 478889999999999999999999999965431 11 2467766531 1100 00
Q ss_pred -----ccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHH
Q 047998 178 -----EKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQM 252 (558)
Q Consensus 178 -----e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~i 252 (558)
.+..|.-.+ .++..-... .| =++|++|++||.|.+... --.-||+|.|++..+++-++....+..+
T Consensus 297 ~dyF~~~~~LtvS~-----QL~~E~~~~--~l-~rVy~igp~FRaE~s~T~-RHL~EF~mlE~E~af~dl~d~m~~~E~~ 367 (565)
T PLN02603 297 QDFFGKPAFLTVSG-----QLNGETYAT--AL-SDVYTFGPTFRAENSNTS-RHLAEFWMIEPELAFADLNDDMACATAY 367 (565)
T ss_pred hhhhCcceeeccCc-----hHHHHHHHh--cc-cceEEEecceeCCCCCCc-cccccceeeeeeeecCCHHHHHHHHHHH
Confidence 011222111 111111111 23 378999999999999433 0346999999999888766655554444
Q ss_pred H-HHHHHH
Q 047998 253 I-DIYTKF 259 (558)
Q Consensus 253 l-~~y~~l 259 (558)
+ .+.+.+
T Consensus 368 l~~~~~~v 375 (565)
T PLN02603 368 LQYVVKYI 375 (565)
T ss_pred HHHHHHHH
Confidence 4 344444
No 106
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=97.50 E-value=0.00093 Score=68.34 Aligned_cols=98 Identities=11% Similarity=0.180 Sum_probs=79.5
Q ss_pred CCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEE-eCCCCCCHHHHHHHHHHcCCCEEEEeCcee------cCCC
Q 047998 361 PIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKL-DDSDQRTPGWKFNFWEMKGIPLRIEIGPRD------VSSG 433 (558)
Q Consensus 361 P~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~v-D~r~~~slgkk~~~ae~~GiP~~IiIG~kE------l~~~ 433 (558)
-.+|+|+.++.. -+.....+|.+.|+++||++++ .+.. .++-..+.++...||+++|+|-+++ -..+
T Consensus 5 RCDVLV~S~~~~-----~L~~~~~~iv~~LW~~gIsAd~~~~~~-~S~Eel~~~~~~~gi~wiViikq~~~~~~~~~~~k 78 (273)
T PF12745_consen 5 RCDVLVCSFGPS-----SLRTEGIEIVQELWAAGISADLMYDAS-PSQEELQSYCREDGISWIVIIKQKEKSSSSKSKYK 78 (273)
T ss_pred cceEEEEeCChh-----HHHHHHHHHHHHHHHCCCceEeccccC-CCHHHHHHHHHHCCCCEEEEEecccccccCCCccC
Confidence 468999998764 2458899999999999999999 3333 5999999999999999999998765 2234
Q ss_pred eEEEEEcCCCCccccccccccChHHHHHHHHHHHHHH
Q 047998 434 SVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLDEI 470 (558)
Q Consensus 434 ~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~ll~~~ 470 (558)
.|.||+..++... .|+.+||+.++...+.+-
T Consensus 79 ~lKVK~l~~~~e~------dv~~~eLv~~l~~ei~~r 109 (273)
T PF12745_consen 79 PLKVKSLEKKKET------DVDRDELVDWLQQEIRER 109 (273)
T ss_pred ceEEeccCCCccc------ccCHHHHHHHHHHHHHhh
Confidence 5999999987654 788999999988777543
No 107
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=97.47 E-value=0.0016 Score=64.42 Aligned_cols=102 Identities=12% Similarity=0.146 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHcCCeeeecCccccHh-hHhhhhcCccccCC--------ceEEEEecCCccccccccccCCCcHHHH
Q 047998 121 WEAIQDYLNVKFKETGHSNMYFPQFIPYS-FIEKEASHVEGFSP--------ELALVTIGGGKELEEKLVVRPTSETIVN 191 (558)
Q Consensus 121 ~~~I~~~i~~~~~~~G~~ei~tP~l~~~~-l~~k~sgh~~~f~~--------Emy~~~~~g~~~l~e~l~LRPt~e~~i~ 191 (558)
.+.+.+.+++.+...||+|+.|+.|.+.+ .+.+ -+ +.+ +.+.+.+ ++ .-+|||+..+++.
T Consensus 3 ~~~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~-~~----~~~~~~~~~~~~~v~l~N----P~--~~~LR~sLlp~LL 71 (218)
T cd00496 3 LNKVIEEIEDIFVSMGFTEVEGPEVETDFYNFDA-LN----IPQDHPARDMQDTFYIND----PA--RLLLRTHTSAVQA 71 (218)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCcccccchhhhh-cC----CCCCCcccccCceEEECC----Cc--eEEEeccCcHHHH
Confidence 45677889999999999999999998773 3321 11 111 1122221 01 3689999999888
Q ss_pred HHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeC
Q 047998 192 HMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHA 240 (558)
Q Consensus 192 ~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~ 240 (558)
...+.. ..|+++|++|+|||.+..... +..||.+.++...|.
T Consensus 72 ~~l~~N-----~~~~~lFEiG~Vf~~~~~~~~--~~~E~~~l~~~~~g~ 113 (218)
T cd00496 72 RALAKL-----KPPIRIFSIGRVYRNDEIDAT--HLPEFHQIEGLVVDK 113 (218)
T ss_pred HHHHhc-----CCCeeEEEEcCeEECCCCCCC--cCCccEEEEEEEECC
Confidence 766554 579999999999999864333 345999999999874
No 108
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=97.38 E-value=0.00079 Score=80.89 Aligned_cols=120 Identities=14% Similarity=0.108 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHHh
Q 047998 118 YAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQW 197 (558)
Q Consensus 118 ~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~ 197 (558)
++++..|.+.+|+.|.+.||.||.||+|.+.. .|. .-+.|.+.... ++.+++||-..+ +|.+.
T Consensus 770 ~r~Rs~i~~~iR~fl~~~gFlEVeTPiL~~~~-----gGa----~a~pF~t~~~~---~~~~~yLriSPE-----LylKr 832 (1094)
T PRK02983 770 LRARSAVVRAVRETLVARGFLEVETPILQQVH-----GGA----NARPFVTHINA---YDMDLYLRIAPE-----LYLKR 832 (1094)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEeCCEeeccC-----CCc----ccceeEeeecC---CCccchhhcChH-----HHHHH
Confidence 45788999999999999999999999996321 121 12234332211 234678876655 33333
Q ss_pred -HhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHH
Q 047998 198 -IHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKF 259 (558)
Q Consensus 198 -i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l 259 (558)
+.+ .+ =|+|++|++||+|...+ ...-||+|.|+|..+.+-++....+..++ .+.+.+
T Consensus 833 Livg--G~-erVFEIg~~FRnE~~~~--rHnpEFTmLE~y~a~~dy~d~m~l~E~li~~i~~~v 891 (1094)
T PRK02983 833 LCVG--GV-ERVFELGRNFRNEGVDA--THNPEFTLLEAYQAHADYDTMRDLTRELIQNAAQAA 891 (1094)
T ss_pred HHhc--cc-CceEEEcceecCCCCCC--CccccccchhhhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 222 23 38999999999999943 26779999999999888777766666555 344443
No 109
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.31 E-value=0.0021 Score=69.14 Aligned_cols=118 Identities=18% Similarity=0.167 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHH
Q 047998 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQ 196 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~ 196 (558)
-++|+..|...+++.|.+.||.+|.||+|..... +. +.++|.++--+. +..|- ..+ .+++.
T Consensus 133 v~kirs~i~~a~~eff~~~gF~eV~tP~i~~~~~---EG------g~elF~v~yf~~-----~a~Lt--qS~---QLyke 193 (435)
T COG0017 133 VFKIRSSILRAIREFFYENGFTEVHTPIITASAT---EG------GGELFKVDYFDK-----EAYLT--QSP---QLYKE 193 (435)
T ss_pred HHhHHHHHHHHHHHHHHhCCcEEecCceEeccCC---CC------CceeEEEeecCc-----ceEEe--cCH---HHHHH
Confidence 5789999999999999999999999999976653 11 246777665432 22321 111 22333
Q ss_pred hH-hhcCCCCeEEEEEeeeeecCCC-CCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHH
Q 047998 197 WI-HSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKF 259 (558)
Q Consensus 197 ~i-~s~rdLPlkl~q~~~vfR~E~~-~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l 259 (558)
.. .+. =|+|.+|++||.|.+ |+= -+-||+|.|++..+++-.+...-+..++ .+++++
T Consensus 194 ~~~~al----~rVf~igP~FRAE~s~T~R--HL~EF~~ld~Emaf~~~~d~m~l~E~~i~~i~~~v 253 (435)
T COG0017 194 ALAAAL----ERVFTIGPTFRAEKSNTRR--HLSEFWMLDPEMAFADLNDVMDLAEELIKYLFKKV 253 (435)
T ss_pred HHHHHh----CceEEecCceecCCCCCcc--hhhhHheecceeccCcHHHHHHHHHHHHHHHHHHH
Confidence 22 221 289999999999999 442 3889999999999999766655555544 344544
No 110
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=97.30 E-value=0.0019 Score=72.38 Aligned_cols=119 Identities=19% Similarity=0.143 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCcc-----c--------------
Q 047998 116 YGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKE-----L-------------- 176 (558)
Q Consensus 116 ~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~-----l-------------- 176 (558)
.-++++..|...+++.|...||.+|.||+|...+- +| +.|||.|+...+.+ +
T Consensus 213 avlRiRs~l~~a~r~ff~~~gF~eI~TPiit~s~~--------EG-a~elF~V~t~~~~~~~~~~~p~~~~~~~~~~~~~ 283 (586)
T PTZ00425 213 SVIRIRNALAIATHLFFQSRGFLYIHTPLITTSDC--------EG-GGEMFTVTTLLGEDADYRAIPRVNKKNKKGEKRE 283 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccCC--------CC-CcceEEeeeccccccccccccccccccccccccc
Confidence 45789999999999999999999999999965542 12 35778775321000 0
Q ss_pred ---------------------------------------cccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeec
Q 047998 177 ---------------------------------------EEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRW 217 (558)
Q Consensus 177 ---------------------------------------~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~ 217 (558)
+.+.+|.-.+ .++...+.. .+ =|+|+++++||.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~yF~k~ayL~~S~-----QLylE~~~~--g~-~rVf~i~p~FRa 355 (586)
T PTZ00425 284 DILNTCNANNNNGNSSSSNAVSSPAYPDQYLIDYKKDFFSKQAFLTVSG-----QLSLENLCS--SM-GDVYTFGPTFRA 355 (586)
T ss_pred cccccccccccccccccccccccccccccccccccccccCcceEEEcCc-----hHHHHHHHh--cc-CCEEEEeceEeC
Confidence 0111121111 122222211 23 389999999999
Q ss_pred CCCCCCcccc-ceEEEecceeeeCChHHHHHHHHHHH
Q 047998 218 EMRTKPFVRT-LEFLWQEGHTAHATPEEAEKEAMQMI 253 (558)
Q Consensus 218 E~~~rGllR~-REF~q~d~h~~~~~~~~a~~e~~~il 253 (558)
|..... |- -||+|.|++..+.+.++....+..++
T Consensus 356 E~s~t~--RHL~EFt~lE~E~af~d~~d~m~~~E~li 390 (586)
T PTZ00425 356 ENSHTS--RHLAEFWMIEPEIAFADLYDNMELAESYI 390 (586)
T ss_pred CCCCCC--CCCcccceEEEEEecCCHHHHHHHHHHHH
Confidence 998333 44 69999999998887666554444444
No 111
>PLN02221 asparaginyl-tRNA synthetase
Probab=97.27 E-value=0.0016 Score=72.84 Aligned_cols=33 Identities=15% Similarity=0.029 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeeecCccccHh
Q 047998 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYS 149 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~ 149 (558)
-++++..|...+++.|.+.||.+|.||+|...+
T Consensus 170 i~RiRS~i~~aiR~ff~~~gFiEI~TP~Lt~s~ 202 (572)
T PLN02221 170 VARIRNALAFATHSFFQEHSFLYIHTPIITTSD 202 (572)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCeecccc
Confidence 468899999999999999999999999997654
No 112
>PLN02532 asparagine-tRNA synthetase
Probab=97.22 E-value=0.0019 Score=72.74 Aligned_cols=53 Identities=15% Similarity=-0.035 Sum_probs=38.6
Q ss_pred eEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHH
Q 047998 206 LLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKF 259 (558)
Q Consensus 206 lkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l 259 (558)
=|+|++|++||.|.+... --.-||+|.|++..+++-++...-+..|+ .+.+.+
T Consensus 390 ~rVYeIgP~FRAE~s~T~-RHL~EFtmlE~Emaf~d~~dvM~l~E~lI~~v~k~v 443 (633)
T PLN02532 390 GNVYTFGPRFRADRIDSA-RHLAEMWMVEVEMAFSELEDAMNCAEDYFKFLCKWV 443 (633)
T ss_pred CceEEEccceecCCCCCC-cccccccceeeeehhcCHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999322 14789999999998887666655555554 344444
No 113
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=97.17 E-value=0.018 Score=63.02 Aligned_cols=123 Identities=17% Similarity=0.123 Sum_probs=80.1
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCeeee-cCccccHhhHh-----hhhcCccccCCceEEEEec-----------------
Q 047998 115 PYGYAIWEAIQDYLNVKFKETGHSNMY-FPQFIPYSFIE-----KEASHVEGFSPELALVTIG----------------- 171 (558)
Q Consensus 115 P~g~~i~~~I~~~i~~~~~~~G~~ei~-tP~l~~~~l~~-----k~sgh~~~f~~Emy~~~~~----------------- 171 (558)
+-...-...+.+.+++.|...||+++. -|.++ .+.|. --..|-.-=..+.|++.+.
T Consensus 217 ~G~~HPl~~~~~ei~~if~~mGF~e~~~g~~ve-s~f~NFDaL~~PqdHPARd~qDTFyl~~~~~~~~~p~~~~erVk~~ 295 (492)
T PLN02853 217 GGHLHPLLKVRQQFRKIFLQMGFEEMPTNNFVE-SSFWNFDALFQPQQHPARDSHDTFFLKAPATTRQLPEDYVERVKTV 295 (492)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEecCCCCee-chhhhhhhhcCCCCCCCCCccceEEEcCccccccCcHHHHHHHHHH
Confidence 344566788899999999999999995 56554 33332 1123433223446777531
Q ss_pred ---CC-----------ccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEeccee
Q 047998 172 ---GG-----------KELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHT 237 (558)
Q Consensus 172 ---g~-----------~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~ 237 (558)
|| .+....++||.-.|+.-.+++.+.... ..-|+|++.+|.|||+|.--.= .+-||||.|+-+
T Consensus 296 He~G~~gS~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~~~-~~~p~k~fsigrVfR~d~iDat--H~~eFhQ~EG~v 372 (492)
T PLN02853 296 HESGGYGSIGYGYDWKREEANKNLLRTHTTAVSSRMLYKLAQK-GFKPKRYFSIDRVFRNEAVDRT--HLAEFHQVEGLV 372 (492)
T ss_pred HhcCCCCccccccccccchhcccccCCCCCHHHHHHHHHhhcc-CCCCcEEEeccceecCCCCCcc--cCccceeEEEEE
Confidence 00 001246899977776666766654321 2469999999999999985222 566999999999
Q ss_pred eeCC
Q 047998 238 AHAT 241 (558)
Q Consensus 238 ~~~~ 241 (558)
++..
T Consensus 373 vd~~ 376 (492)
T PLN02853 373 CDRG 376 (492)
T ss_pred EeCC
Confidence 8543
No 114
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=97.11 E-value=0.0018 Score=72.45 Aligned_cols=121 Identities=12% Similarity=0.077 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHH
Q 047998 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQ 196 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~ 196 (558)
-++++..|.+.+|+.|...||.||.||+|..... -|+.+. |.+..-| ..++|+-..+ ++++
T Consensus 212 i~r~rs~i~~~~R~fl~~~gFiEV~TP~L~~~~~----egga~~-----F~v~yf~-----~~~~L~qSpq-----l~kq 272 (550)
T PTZ00401 212 IFRLQSRVCQYFRQFLIDSDFCEIHSPKIINAPS----EGGANV-----FKLEYFN-----RFAYLAQSPQ-----LYKQ 272 (550)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCC----Cccccc-----cccccCC-----CCeecCCCHH-----HHHH
Confidence 4678889999999999999999999999975431 122233 3332222 3577764433 3444
Q ss_pred hHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEeccee-eeCChHHHHHHHHHHH-HHHHHH
Q 047998 197 WIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHT-AHATPEEAEKEAMQMI-DIYTKF 259 (558)
Q Consensus 197 ~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~-~~~~~~~a~~e~~~il-~~y~~l 259 (558)
.+... ++ =|+||+|+|||.|..... --.-||+|.|++. |..+-.+....+..++ .+++.+
T Consensus 273 ~li~~-g~-~rVfeI~p~FRaE~s~T~-RHl~EFt~Le~E~~~~~~y~evm~~~e~l~~~i~~~l 334 (550)
T PTZ00401 273 MVLQG-DV-PRVFEVGPVFRSENSNTH-RHLTEFVGLDVEMRINEHYYEVLDLAESLFNYIFERL 334 (550)
T ss_pred HHHhc-CC-CCEEEEeCeEeCCCCCCC-CCccchhhhhhhhHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 43321 33 389999999999998322 0335999999975 4445566655555554 344444
No 115
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]
Probab=96.57 E-value=0.005 Score=66.25 Aligned_cols=116 Identities=16% Similarity=0.138 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHHHHHHH-HHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecC-CccccccccccCCCcHHHHHH
Q 047998 116 YGYAIWEAIQDYLNVKF-KETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGG-GKELEEKLVVRPTSETIVNHM 193 (558)
Q Consensus 116 ~g~~i~~~I~~~i~~~~-~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g-~~~l~e~l~LRPt~e~~i~~~ 193 (558)
+-.+++..+...+|+.| ...||.+|.||+| |.+.-|. +.|...-+... | .++--|-|-. -
T Consensus 176 ~nLrlRS~~v~~iR~yl~n~~GFvevETPtL-----FkrTPgG----A~EFvVPtr~~~g-----~FYaLpQSPQ----Q 237 (628)
T KOG2411|consen 176 NNLRLRSNVVKKIRRYLNNRHGFVEVETPTL-----FKRTPGG----AREFVVPTRTPRG-----KFYALPQSPQ----Q 237 (628)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCeeeccCcch-----hccCCCc----cceeecccCCCCC-----ceeecCCCHH----H
Confidence 34577888888899988 5779999999988 5443332 22322222222 2 2333344443 2
Q ss_pred HHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH
Q 047998 194 FTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI 253 (558)
Q Consensus 194 ~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il 253 (558)
|++-+..-. ==|+||++.|||+|-.-.- |.-||+|.|++..+.+.++..+-+..++
T Consensus 238 fKQlLMvsG--idrYyQiARCfRDEdlR~D--RQPEFTQvD~EMsF~~~~dim~liEdll 293 (628)
T KOG2411|consen 238 FKQLLMVSG--IDRYYQIARCFRDEDLRAD--RQPEFTQVDMEMSFTDQEDIMKLIEDLL 293 (628)
T ss_pred HHHHHHHhc--hhhHHhHHhhhcccccCcc--cCCcceeeeeEEeccCHHHHHHHHHHHH
Confidence 444332111 1278999999999998444 7779999999999888866655444443
No 116
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=96.47 E-value=0.0021 Score=68.59 Aligned_cols=113 Identities=19% Similarity=0.124 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHH
Q 047998 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQ 196 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~ 196 (558)
-+.++.+|+++||+.+...||.||.||++... ..|-... = .+|+.. +|+-++.||=..|-- .+.
T Consensus 224 ~f~~RakII~~iRkfld~rgFlEVETPmmn~i-----aGGA~Ak----P-FIT~hn--dldm~LylRiAPEL~----lK~ 287 (560)
T KOG1885|consen 224 RFRIRAKIISYIRKFLDSRGFLEVETPMMNMI-----AGGATAK----P-FITHHN--DLDMDLYLRIAPELY----LKM 287 (560)
T ss_pred HHHHHHHHHHHHHHHhhhcCceEecchhhccc-----cCccccC----c-eeeccc--ccCcceeeeechHHH----HHH
Confidence 46789999999999999999999999998321 1221111 1 145443 345678888766632 222
Q ss_pred hHhhcCCCCeEEEEEeeeeecCCC--CCCccccceEEEecceeeeCChHHHHHHHHHH
Q 047998 197 WIHSYRDLPLLVNQWANVTRWEMR--TKPFVRTLEFLWQEGHTAHATPEEAEKEAMQM 252 (558)
Q Consensus 197 ~i~s~rdLPlkl~q~~~vfR~E~~--~rGllR~REF~q~d~h~~~~~~~~a~~e~~~i 252 (558)
-+-. .| =|+|+||..||+|-- ++ .-||+-+|+|.+-++-.+...-...+
T Consensus 288 LvVG--Gl-drVYEIGr~FRNEGIDlTH----NPEFTTcEfY~AYady~dlm~~TE~l 338 (560)
T KOG1885|consen 288 LVVG--GL-DRVYEIGRQFRNEGIDLTH----NPEFTTCEFYMAYADYEDLMDMTEEL 338 (560)
T ss_pred HHhc--cH-HHHHHHHHHhhhcCccccc----CCCcchHHHHHHHhhHHHHHHHHHHH
Confidence 2322 12 378999999999987 43 23999999998766555544333333
No 117
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=96.46 E-value=0.0045 Score=67.23 Aligned_cols=105 Identities=20% Similarity=0.150 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHH
Q 047998 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQ 196 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~ 196 (558)
-+..+-+|.+.||+.|...||-||.||+|.+-. .|-.. --| +|+.. .|+-+++||=..| .++++
T Consensus 179 ~f~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i~-----GGA~A----rPF-~ThhN--ald~dlyLRIApE----LyLKR 242 (502)
T COG1190 179 TFIKRSKIIRAIREFLDDRGFLEVETPMLQPIP-----GGAAA----RPF-ITHHN--ALDMDLYLRIAPE----LYLKR 242 (502)
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEeccccccccC-----CCccc----ccc-eeeec--ccCCceEEeeccH----HHHHH
Confidence 456788999999999999999999999995431 22111 111 23322 2456799997776 34555
Q ss_pred hHhhcCCCCeEEEEEeeeeecCCC--CC-CccccceEEEecceeeeCChHHH
Q 047998 197 WIHSYRDLPLLVNQWANVTRWEMR--TK-PFVRTLEFLWQEGHTAHATPEEA 245 (558)
Q Consensus 197 ~i~s~rdLPlkl~q~~~vfR~E~~--~r-GllR~REF~q~d~h~~~~~~~~a 245 (558)
.+.. .+ =|+|++|.+||+|-- ++ | ||+|.|.|.+.++-.+.
T Consensus 243 liVG--G~-erVfEIgr~FRNEGid~tHNP-----EFTmlE~Y~AYaDy~D~ 286 (502)
T COG1190 243 LIVG--GF-ERVFEIGRNFRNEGIDTTHNP-----EFTMLEFYQAYADYEDL 286 (502)
T ss_pred HHhc--Cc-hhheeeccccccCCCccccCc-----chhhHHHHHHHhHHHHH
Confidence 5544 22 399999999999988 32 6 99999999886554443
No 118
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=95.40 E-value=0.029 Score=60.84 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=51.6
Q ss_pred cccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC-CCCccccceEEEecceeeeCChHHHHHHHHHHH-HHH
Q 047998 179 KLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIY 256 (558)
Q Consensus 179 ~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~-~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y 256 (558)
.+.||...+++....+.. +..+..+|+|++.+|.|||.|.. -.= ++++|+|.++-+++.+-- -.++..++ .++
T Consensus 182 ~~lLRTHTTpgqirtL~~-L~~~~~~PiRIFsIGRVfRrD~~~DaT--Hl~eFhQlEGLVVdedVS--f~DLKgvLe~LL 256 (533)
T TIGR00470 182 TLTLRSHMTSGWFITLSS-IIDKRKLPLKLFSIDRCFRREQREDRS--HLMTYHSASCVVVDEEVS--VDDGKAVAEGLL 256 (533)
T ss_pred CcccccCChhHHHHHHHH-HhhcCCCCeEEEeeeeEEecCCCCCCc--cCceeeeEEEEEECCCCC--HHHHHHHHHHHH
Confidence 468888777766665543 23356799999999999999964 211 689999999999864332 23444444 344
Q ss_pred HHH
Q 047998 257 TKF 259 (558)
Q Consensus 257 ~~l 259 (558)
+++
T Consensus 257 r~L 259 (533)
T TIGR00470 257 AQF 259 (533)
T ss_pred HHh
Confidence 555
No 119
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.75 E-value=0.046 Score=57.78 Aligned_cols=119 Identities=18% Similarity=0.165 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHHh
Q 047998 118 YAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQW 197 (558)
Q Consensus 118 ~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~ 197 (558)
++|..-|...+|+.+...||.+|.||-|+..+ | +| +..+|.++--++. -+|.-. + .++++.
T Consensus 228 Friq~gvc~~FRe~L~~kgF~EIhTpKli~as-----S---EG-GanvF~v~Yfk~~-----A~LAQS--P---QLyKQM 288 (533)
T KOG0556|consen 228 FRIQAGVCFAFREYLRSKGFVEIHTPKLIGAS-----S---EG-GANVFRVSYFKQK-----AYLAQS--P---QLYKQM 288 (533)
T ss_pred eehHHHHHHHHHHHHHhcCcceeccccccccc-----C---CC-CceeEEEEeccCc-----chhhcC--h---HHHHHH
Confidence 35666788899999999999999999886443 1 12 3568888776552 222111 1 123332
Q ss_pred HhhcCCCCeEEEEEeeeeecCCC-CCCccccceEEEecceeeeCC-hHHHHHHHHHHH-HHHHHH
Q 047998 198 IHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEFLWQEGHTAHAT-PEEAEKEAMQMI-DIYTKF 259 (558)
Q Consensus 198 i~s~rdLPlkl~q~~~vfR~E~~-~rGllR~REF~q~d~h~~~~~-~~~a~~e~~~il-~~y~~l 259 (558)
..- .|+ =|+|.+|+|||.|.+ ++- -..||.-.|++...+. -.+....+..++ .+|+.+
T Consensus 289 aI~-gdf-~rVyeIGpVfRAEdSnthR--hltEFvGLD~EMaf~~hYhEVm~~i~~lfv~IF~~l 349 (533)
T KOG0556|consen 289 AIC-GDF-ERVYEIGPVFRAEDSNTHR--HLTEFVGLDLEMAFNEHYHEVMDTIGELFVFIFKGL 349 (533)
T ss_pred HHh-cch-hheeeecceeeccccchhh--hhHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 132 489999999999999 554 5679988888876432 233333333333 344444
No 120
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=94.61 E-value=0.1 Score=55.09 Aligned_cols=110 Identities=17% Similarity=0.081 Sum_probs=76.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCC----cHH
Q 047998 114 RPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTS----ETI 189 (558)
Q Consensus 114 lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~----e~~ 189 (558)
...-++++..+.....+.|...+|..|.+|+|...+- +|. .|||.++-.-. -+..+.=||+. ...
T Consensus 128 ~~av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~DC--------EGa-GE~F~vtt~~d--~~~~fFg~p~fLTVSgQL 196 (446)
T KOG0554|consen 128 VGAVLRVRSALAFATHSFFQSHDFTYINTPIITTNDC--------EGA-GEVFQVTTLTD--YSKDFFGRPAFLTVSGQL 196 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCceEecCcEeeccCC--------CCC-cceEEEEecCc--ccccccCCceEEEEecee
Confidence 4456899999999999999999999999999965542 343 58998875321 12345556652 222
Q ss_pred HHHHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCCh
Q 047998 190 VNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATP 242 (558)
Q Consensus 190 i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~ 242 (558)
+...++-- | =+.|-+|+.||.|.+... .-+-||+|.|++++++++
T Consensus 197 hlE~~a~~------L-srvyTfgP~FRAEnS~ts-RHLAEFwMlEaE~AF~~s 241 (446)
T KOG0554|consen 197 HLEAMACA------L-SRVYTFGPTFRAENSHTS-RHLAEFWMLEAELAFAES 241 (446)
T ss_pred hHHHHHhh------h-cceEeeccceecccCCch-hHHhhhhhhhhHHHHHHH
Confidence 22222221 1 378899999999999432 045699999999998773
No 121
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=93.71 E-value=0.65 Score=52.45 Aligned_cols=112 Identities=15% Similarity=0.086 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeeecCccccHhh-HhhhhcCccccCC--ceEEEEecCCccccccccccCCCcHHHHHH
Q 047998 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSF-IEKEASHVEGFSP--ELALVTIGGGKELEEKLVVRPTSETIVNHM 193 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l-~~k~sgh~~~f~~--Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~ 193 (558)
...-.+.+.+.+++.+...||+|+.|..|.+.+. +.+ - ++.+ +...+.+--. ++.-+||++..+++...
T Consensus 357 ~~~~~~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~-~----~~~~~~~~i~l~NPls---~e~svLRtsLlpgLL~~ 428 (552)
T PRK09616 357 RLHPIEKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEK-M----NLEPEEDYVEVLNPIS---EDYTVVRTSLLPSLLEF 428 (552)
T ss_pred CCChHHHHHHHHHHHHHhCCcceeccceEechHHHHHH-h----CCCCCCCeEEEcCCCc---cchheEeccchHHHHHH
Confidence 3344567788889999999999999999998865 532 1 1222 2344443211 24679999999999998
Q ss_pred HHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeC
Q 047998 194 FTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHA 240 (558)
Q Consensus 194 ~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~ 240 (558)
.+... ++..|+++|++|+||+.+..... ..+|+.+..+-+.|.
T Consensus 429 ~~~N~--~~~~~~~lFEiG~Vf~~~~~~~~--~~~e~~~l~~~~~g~ 471 (552)
T PRK09616 429 LSNNK--HREYPQKIFEIGDVVLIDESTET--GTRTERKLAAAIAHS 471 (552)
T ss_pred HHhcc--CCCCCeeEEEeeEEEecCCcccc--CcchhhEEEEEEECC
Confidence 88776 44679999999999987643111 235777777666653
No 122
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=93.01 E-value=0.32 Score=47.26 Aligned_cols=88 Identities=13% Similarity=0.016 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCC-ceEEEEecCCccccccccccCCCcHHHHHHHHHhHhh
Q 047998 122 EAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSP-ELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHS 200 (558)
Q Consensus 122 ~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~-Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s 200 (558)
..+++.+++.+...||.|+.|..|.+.+.+.. . ++.. +...+.+--. ++.=+||++.-+++....+...+
T Consensus 3 ~~~~~~ir~~L~~~G~~E~~tys~~~~~~~~~-~----~~~~~~~i~l~NPis---~e~~~lR~sLlp~LL~~~~~N~~- 73 (198)
T cd00769 3 QKLERKLRRLLAGLGFQEVITYSLTSPEEAEL-F----DGGLDEAVELSNPLS---EEYSVLRTSLLPGLLDALARNLN- 73 (198)
T ss_pred hHHHHHHHHHHHHCCCceeecccCCCHHHHHh-c----cCCCCCeEEEcCCCc---hhHHHHHHHHHHHHHHHHHHHhc-
Confidence 45677789999999999999999988865532 1 1111 3344433111 23568999999999887777653
Q ss_pred cCCCCeEEEEEeeeeecC
Q 047998 201 YRDLPLLVNQWANVTRWE 218 (558)
Q Consensus 201 ~rdLPlkl~q~~~vfR~E 218 (558)
++..|+++|++|+||..+
T Consensus 74 ~~~~~~~lFEiG~vf~~~ 91 (198)
T cd00769 74 RKNKPLRLFEIGRVFLKD 91 (198)
T ss_pred CCCCCEeEEEeEeEEecC
Confidence 446899999999999654
No 123
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=91.03 E-value=0.18 Score=52.71 Aligned_cols=117 Identities=21% Similarity=0.200 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHcCCeeeecCccccHhhHhhh-----hcCccccCCceEEEEe--------------------cCCc-
Q 047998 121 WEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKE-----ASHVEGFSPELALVTI--------------------GGGK- 174 (558)
Q Consensus 121 ~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~-----sgh~~~f~~Emy~~~~--------------------~g~~- 174 (558)
..+|.+.+|+.|-..||.|+-|-.++..++|.=- -.|-..=..+.|.+.+ .||-
T Consensus 214 LmKvR~eFRqiF~emGFsEMptn~yVEssFWNFDALfqPQqHpARDahDTFfl~~Pa~s~~~p~dY~~rVk~vH~~G~yg 293 (483)
T KOG2784|consen 214 LMKVREEFRQIFFEMGFSEMPTNNYVESSFWNFDALFQPQQHPARDAHDTFFLKDPATSTKFPEDYLERVKAVHEQGGYG 293 (483)
T ss_pred HHHHHHHHHHHHHHccccccccccchhhccccchhhcCcccCCccccccceEecChhhcccCCHHHHHHHHHHHhcCCcC
Confidence 5788899999999999999999888877776321 1122111223454433 1110
Q ss_pred --------cc--cccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeC
Q 047998 175 --------EL--EEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHA 240 (558)
Q Consensus 175 --------~l--~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~ 240 (558)
++ .++.+||--+|+.-++|+-+..+. .--|-|++.|-.|||+|.--.- -+-||||.|+-+++.
T Consensus 294 s~GY~y~wk~eEaqKnvLRTHTTavSArmLy~LAk~-~f~p~K~FSIDrVFRNEtvDaT--HLAEFHQVEGviad~ 366 (483)
T KOG2784|consen 294 SIGYRYNWKLEEAQKNVLRTHTTAVSARMLYRLAKK-GFKPAKYFSIDRVFRNETVDAT--HLAEFHQVEGVIADK 366 (483)
T ss_pred CcccCCCCCHHHHHHHHHhhhhHHhhHHHHHHHHhC-CCCcccccchhhhhhccccchH--HHHHHhhhceeeecC
Confidence 01 246789966666666665443322 2359999999999999998433 667999999999753
No 124
>PLN02788 phenylalanine-tRNA synthetase
Probab=90.83 E-value=2.6 Score=45.58 Aligned_cols=108 Identities=12% Similarity=0.017 Sum_probs=67.9
Q ss_pred chhHHHHHHHHHHHHHHHHHc---CCeeee--cCccccHhhH---hhhhcCccccCCceEEEEecCCccccccccccCCC
Q 047998 115 PYGYAIWEAIQDYLNVKFKET---GHSNMY--FPQFIPYSFI---EKEASHVEGFSPELALVTIGGGKELEEKLVVRPTS 186 (558)
Q Consensus 115 P~g~~i~~~I~~~i~~~~~~~---G~~ei~--tP~l~~~~l~---~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~ 186 (558)
+....-...+.+.|.+.|... ||+.+. .|+.....-| .--.+|-.-=..+.|++. +..+||-=.
T Consensus 64 ~~~~HPl~~~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~~--------~~~lLRTHT 135 (402)
T PLN02788 64 RRPDHPLGILKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYVD--------AQTVLRCHT 135 (402)
T ss_pred CCCCChHHHHHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEec--------CCccccCCC
Confidence 334445566777777777776 999988 4543222112 112334433334466663 258899666
Q ss_pred cHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeee
Q 047998 187 ETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAH 239 (558)
Q Consensus 187 e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~ 239 (558)
++...+++.+ ..| ++...|.|||.|.--+= -+-+|||.|+-.++
T Consensus 136 Sa~q~~~l~~------~~~-~~~~~g~VyRrD~iD~t--H~p~FhQ~EG~~v~ 179 (402)
T PLN02788 136 SAHQAELLRA------GHT-HFLVTGDVYRRDSIDAT--HYPVFHQMEGVRVF 179 (402)
T ss_pred cHHHHHHHHh------CCC-cEEEEeeEeecCCCCcc--cCccceeEEEEEEe
Confidence 6555566654 124 89999999999986222 45599999999885
No 125
>PF09181 ProRS-C_2: Prolyl-tRNA synthetase, C-terminal; InterPro: IPR015264 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found predominantly found in prolyl-tRNA synthetases from archaeal Methanococci species. It contains a zinc binding site, and adopts a structure consisting of alpha helices and antiparallel beta sheets arranged in 2 layers, in a beta-alpha-beta-alpha-beta motif []. ; GO: 0000166 nucleotide binding, 0004827 proline-tRNA ligase activity, 0005524 ATP binding, 0006433 prolyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1NJ8_C.
Probab=85.83 E-value=1.2 Score=34.91 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=32.9
Q ss_pred HHHHHHHHhC-CCEEEeeCCCChhhHHHHHHHhCCcccccccCCCCCCccccccCCCcceEEEEeecC
Q 047998 492 YEELKEAISM-GKWARGPWSASDADELKVKEETGATIRCFPFEQPQGNKTCFMTGNPAQEVALFAKSY 558 (558)
Q Consensus 492 ~ee~k~al~~-~~~v~apwc~~~~ce~~ik~~~~a~~~cip~~~~~~~~~C~~~g~~a~~~~~~~rsY 558 (558)
.+++|.++.. +|+++.|+..+. ..+++++..+|+++|+- ....+.|.-+||.|
T Consensus 15 ~e~iK~~L~ekrgviLiPy~e~i-YnEEfEe~idAsvLG~t-------------~y~G~kYIsiArTY 68 (68)
T PF09181_consen 15 IEKIKEILSEKRGVILIPYDESI-YNEEFEEKIDASVLGET-------------EYEGKKYISIARTY 68 (68)
T ss_dssp --HHHHHCTTT-SEEEEE--GGG--SHHHHHHHSS-EEEEE-------------ESSSSEEEEEE-B-
T ss_pred HHHHHHHHHhcCCEEEEeCcHHH-hhHHHHhhhCceEeeeE-------------EecCcEEEEEEeeC
Confidence 3567888864 899999997655 44568888999999852 23445688888887
No 126
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=84.49 E-value=3.2 Score=44.20 Aligned_cols=121 Identities=14% Similarity=0.118 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHHh
Q 047998 118 YAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQW 197 (558)
Q Consensus 118 ~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~ 197 (558)
.+++..+.+.+|+.|...||.||-.|.++.+.+ +.| .-+|.+.--|. +-+|--.| -.++..-
T Consensus 243 LK~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQTQV---EGG------sTLFkldYyGE-----eAyLTQSS----QLYLEtc 304 (545)
T KOG0555|consen 243 LKARAALLRAMRDHYFERGYTEVTPPTMVQTQV---EGG------STLFKLDYYGE-----EAYLTQSS----QLYLETC 304 (545)
T ss_pred HHHHHHHHHHHHHHHHhcCceecCCCceEEEEe---cCc------ceEEeecccCc-----hhhccchh----HHHHHHh
Confidence 567888899999999999999999999988765 223 22444443332 23332111 1112111
Q ss_pred HhhcCCCCeEEEEEeeeeecCCC-CCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHHHHh
Q 047998 198 IHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKFAYE 262 (558)
Q Consensus 198 i~s~rdLPlkl~q~~~vfR~E~~-~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l~~~ 262 (558)
+-+. =.+|-|...||.|++ +|- .+.||+..|++..+.+.++...-+..++ +...+++.+
T Consensus 305 lpAl----gdvy~I~~SyRAEkSrTRR--HLsEytHVEaE~afltfd~ll~~iE~lvc~~vdr~l~d 365 (545)
T KOG0555|consen 305 LPAL----GDVYCIQQSYRAEKSRTRR--HLSEYTHVEAECAFLTFDDLLDRIEALVCDSVDRLLED 365 (545)
T ss_pred hhhc----CceeEecHhhhhhhhhhhh--hhhhheeeeeecccccHHHHHHHHHHHHHHHHHHHHhC
Confidence 1121 257899999999999 665 6789999999999999988877666655 666666554
No 127
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=83.51 E-value=1.2 Score=49.33 Aligned_cols=39 Identities=18% Similarity=0.161 Sum_probs=31.9
Q ss_pred ccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCC
Q 047998 180 LVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEM 219 (558)
Q Consensus 180 l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~ 219 (558)
-+||++..+++...++..+. ++..|+++|++|+|||.+.
T Consensus 184 svLRtSLlPGLL~tLs~Nl~-Rg~~piRLFEIGRVFr~d~ 222 (529)
T PRK06253 184 LTLRSHMTSGWFITLSSLLE-KRPLPIKLFSIDRCFRREQ 222 (529)
T ss_pred CccccchHHHHHHHHHHHHh-CCCCCEEEEEEeeEEecCC
Confidence 38999999988877766654 5688999999999998753
No 128
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=82.38 E-value=3.8 Score=46.29 Aligned_cols=111 Identities=10% Similarity=0.012 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhH-hhhhcCccccCC-ceEEEEecCCccccccccccCCCcHHHHHHH
Q 047998 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFI-EKEASHVEGFSP-ELALVTIGGGKELEEKLVVRPTSETIVNHMF 194 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~-~k~sgh~~~f~~-Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~ 194 (558)
+..-.+.+.+.+++.+...||+|+.|-.|.+.+.+ .+ - ++.+ +...+.+--. ++.=+||++.-+++....
T Consensus 360 ~~~~~~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~-~----~~~~~~~v~l~NPis---~e~s~lR~SLlp~LL~~~ 431 (551)
T TIGR00471 360 RLKPLNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKR-M----RIEDNNDVKVANPKT---LEYTIVRTSLLPGLLETL 431 (551)
T ss_pred CcChHHHHHHHHHHHHHhCCceeeccceEccHHHHHHH-h----ccCCCCcEEeCCCCc---hhhhHhHhhhHHHHHHHH
Confidence 33445677788899999999999999999887432 22 1 1222 2233333111 245689999999999887
Q ss_pred HHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeee
Q 047998 195 TQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAH 239 (558)
Q Consensus 195 ~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~ 239 (558)
+... ++..|+++|++|.||..+... . .+.++|...-+-+.|
T Consensus 432 ~~N~--~~~~~~~lFEiG~Vf~~~~~~-~-~~e~~~~~l~~~~~g 472 (551)
T TIGR00471 432 SENK--HHELPQKIFEIGDVVVKDDKS-E-TRSRVVTKLAVGITH 472 (551)
T ss_pred Hhcc--cCCCCeeEEEEEEEEEcCCcc-c-cccceeeEEEEEEEC
Confidence 7776 457899999999999543211 1 134444544444443
No 129
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=78.70 E-value=5.9 Score=45.27 Aligned_cols=94 Identities=10% Similarity=0.019 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeeecCccccHhh-HhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHH
Q 047998 118 YAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSF-IEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQ 196 (558)
Q Consensus 118 ~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l-~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~ 196 (558)
..-.+++.+.+|+.+...||+|+.+-.|.+.+. +.+ -+. +.-..+...+.+--. .+-=+||++.-+++....+.
T Consensus 396 ~~~~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~-~~~-~~~~~~~v~I~NP~s---~e~~vlRtSLlPgLL~~l~~ 470 (597)
T PLN02265 396 QQPLNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAM-LNR-EDDGNSAVIIGNPRS---ADFEVVRTSLLPGLLKTLGH 470 (597)
T ss_pred CCHHHHHHHHHHHHHHHCCceeeeceeeCChHHHHHh-hcC-CccCCceEEECCCcc---hhHHHHHHhhHHHHHHHHHH
Confidence 344688888999999999999999999988754 432 111 100012233322111 23558999998888887766
Q ss_pred hHhhcCCCCeEEEEEeeeeecC
Q 047998 197 WIHSYRDLPLLVNQWANVTRWE 218 (558)
Q Consensus 197 ~i~s~rdLPlkl~q~~~vfR~E 218 (558)
..+ +.+|+|+|++|.||-.+
T Consensus 471 N~~--~~~p~klFEiG~V~~~~ 490 (597)
T PLN02265 471 NKD--APKPIKLFEVSDVVLLD 490 (597)
T ss_pred hhc--CCCCeeEEEeEeEEecC
Confidence 643 35699999999999543
No 130
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=78.40 E-value=12 Score=41.26 Aligned_cols=108 Identities=15% Similarity=0.106 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHc--------CCeeeec--CccccHhhHh---hhhcCccccCCceEEEEecCCccccccccccCCCc
Q 047998 121 WEAIQDYLNVKFKET--------GHSNMYF--PQFIPYSFIE---KEASHVEGFSPELALVTIGGGKELEEKLVVRPTSE 187 (558)
Q Consensus 121 ~~~I~~~i~~~~~~~--------G~~ei~t--P~l~~~~l~~---k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e 187 (558)
...|.+.|.+.|... ||+-+.- |+..-..-|. --.+|..--..+-|++. +...||.=..
T Consensus 44 l~~~~~~I~~~F~~~~~~~~~~~gf~v~~~~~Pvvt~~~NFD~Ln~P~dHPaR~~~DT~Yi~--------~~~lLRTHTS 115 (460)
T TIGR00469 44 LGIIRDLIEKKFNGADNNQRGNPLFKIFDNFKPVVTTMENFDNLGFPADHPGRQKSDCYYIN--------EQHLLRAHTS 115 (460)
T ss_pred HHHHHHHHHHHHHhhhcccccCCCeEEeeCCCCccchhhhhhhcCCCCCCcccCcccceEec--------CCceeCCCCc
Confidence 344555555566555 7877776 7433333331 12345444344567773 2588886666
Q ss_pred HHHHHHHHHhHhhcCCCCeE--EEEEeeeeecCCCCCCccccceEEEecceeeeC
Q 047998 188 TIVNHMFTQWIHSYRDLPLL--VNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHA 240 (558)
Q Consensus 188 ~~i~~~~~~~i~s~rdLPlk--l~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~ 240 (558)
+...+++++.... ..|++ +.-.|.|||.+.--+= -+-.|||.|+-.+..
T Consensus 116 a~q~~~~~~~~~~--~~~~~~~~i~~G~VYRrD~iDat--H~p~FHQ~EG~~v~~ 166 (460)
T TIGR00469 116 AHELECFQGGLDD--SDNIKSGFLISADVYRRDEIDKT--HYPVFHQADGAAIRK 166 (460)
T ss_pred HHHHHHHHhcccc--CCCcceeeEeecceeeCCCCccc--cCccceeeEEEEEec
Confidence 6666677654322 25888 8889999999985221 444899999766543
No 131
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=72.09 E-value=0.67 Score=48.87 Aligned_cols=65 Identities=20% Similarity=0.254 Sum_probs=38.8
Q ss_pred cchHHHHH---HHHHhccccccCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhh
Q 047998 86 QDFNAWYL---DVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEK 153 (558)
Q Consensus 86 ~~~~~wy~---~~~~~a~l~d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k 153 (558)
.||..-|. +++.+-.+-+.+|- +..-.+...-+++.|+ .+|+.+-+.||+|+.-|++++..-..|
T Consensus 14 ~dFe~aW~eg~k~v~~p~~~~~YPR--l~f~~Gk~Hpl~~TIq-~lReAYLr~GF~EmvNPlivde~evyk 81 (536)
T COG2024 14 RDFERAWKEGKKLVREPHLDERYPR--LKFETGKPHPLYETIQ-RLREAYLRMGFSEMVNPLIVDEEEVYK 81 (536)
T ss_pred HHHHHHHHhhhhhhcCCCccccCCc--cccccCCcCcHHHHHH-HHHHHHHHhhHHHhcCccccCHHHHHH
Confidence 57753333 34444433333331 2222334445666665 468888899999999999998875544
No 132
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=71.93 E-value=4.3 Score=38.48 Aligned_cols=52 Identities=12% Similarity=0.145 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCeeecccHHHHHHHHhCCCEEEeeCCCChhhHHHHHHHhCCcccccccCCCCCCccccccC
Q 047998 466 KLDEIQSALLERATSFRDSNIVDVSSYEELKEAISMGKWARGPWSASDADELKVKEETGATIRCFPFEQPQGNKTCFMTG 545 (558)
Q Consensus 466 ll~~~~~~L~~rA~~~~~~~i~~v~~~ee~k~al~~~~~v~apwc~~~~ce~~ik~~~~a~~~cip~~~~~~~~~C~~~g 545 (558)
..+.+|..||.++++..++.. +-..|+||- +..+ ..+.+|+.||
T Consensus 113 ~~Ek~H~~~~~~~Le~~~~~~-----------------~~vC~vCGy-------------~~~g------e~P~~CPiCg 156 (166)
T COG1592 113 KAEKRHAEMFRGLLERLEEGK-----------------VWVCPVCGY-------------THEG------EAPEVCPICG 156 (166)
T ss_pred HHHHHHHHHHHHHHHhhhcCC-----------------EEEcCCCCC-------------cccC------CCCCcCCCCC
Confidence 355788888888887766554 445677742 2222 3457899999
Q ss_pred CCcceEEE
Q 047998 546 NPAQEVAL 553 (558)
Q Consensus 546 ~~a~~~~~ 553 (558)
-|..+...
T Consensus 157 a~k~~F~~ 164 (166)
T COG1592 157 APKEKFEK 164 (166)
T ss_pred ChHHHhhc
Confidence 88765443
No 133
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=64.92 E-value=30 Score=40.02 Aligned_cols=94 Identities=11% Similarity=-0.042 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHH
Q 047998 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQ 196 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~ 196 (558)
+...++...+.+++.+...||+|+.|-.|.+.+....-. ...++...+.+--. .+.=+||++.-+++-..++.
T Consensus 349 ~~~~~~~~~r~vr~~l~~~G~~Evitysl~s~e~~~~~~----~~~~~~~~l~NPiS---~e~s~mR~sLlp~LL~~~~~ 421 (650)
T COG0072 349 GLTPLQKFRRKVRRALVGLGFQEVITYSLTSPEEAKLFG----LENDEALELANPIS---EEYSVLRTSLLPGLLEALSY 421 (650)
T ss_pred CCChHHHHHHHHHHHHHhCCcceEeeeccCCHHHHHHhc----cCCCcceEecCCcc---hhHHHHHHHHHHHHHHHHHH
Confidence 456777788889999999999999999999988763311 11222222221111 23457888887777766665
Q ss_pred hHhhcCCCC-eEEEEEeeeeecCC
Q 047998 197 WIHSYRDLP-LLVNQWANVTRWEM 219 (558)
Q Consensus 197 ~i~s~rdLP-lkl~q~~~vfR~E~ 219 (558)
.. ++..| +++|++|.||-.+.
T Consensus 422 N~--~r~~~~~~iFEiG~v~~~~~ 443 (650)
T COG0072 422 NK--NRKNPDVRIFEIGDVFVKDE 443 (650)
T ss_pred hh--ccCCCCeeEEEeeeeEecCC
Confidence 43 56789 99999999999863
No 134
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=63.71 E-value=18 Score=42.13 Aligned_cols=87 Identities=8% Similarity=-0.042 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHH
Q 047998 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQ 196 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~ 196 (558)
+....+.+.+.+++.+...||+|+.|-.|.+.+.+ .++...+.+--. ++.=+||++.-+++....+.
T Consensus 396 ~~~~~~~~~~~ir~~L~~~Gf~Evitysf~s~~~~----------~~~~i~l~NPiS---~e~s~lR~SLlpgLL~~~~~ 462 (704)
T CHL00192 396 RLDIDYNTRDKIRSYLRNLGLTELIHYSLVKQESF----------SKNEIKLKNPLI---KDYSTLRSSLLPGLIEAVQE 462 (704)
T ss_pred CCCHHHHHHHHHHHHHHhCCCceEecccccChhhc----------CCCcEEEeCCCc---hHHHHHHHHHHHHHHHHHHH
Confidence 33345566666777777788888887777666432 112233332111 23558999999888887776
Q ss_pred hHhhcCCCCeEEEEEeeeeec
Q 047998 197 WIHSYRDLPLLVNQWANVTRW 217 (558)
Q Consensus 197 ~i~s~rdLPlkl~q~~~vfR~ 217 (558)
.. ++...|+++|++|.||-.
T Consensus 463 N~-~r~~~~~rlFEiG~Vf~~ 482 (704)
T CHL00192 463 NL-KQGNSTLEGFEIGHVFNL 482 (704)
T ss_pred HH-hcCCCCEeEEEeeeeEcC
Confidence 64 344579999999999943
No 135
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=58.67 E-value=32 Score=40.80 Aligned_cols=92 Identities=13% Similarity=0.018 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHH
Q 047998 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQ 196 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~ 196 (558)
.......+.+.+++.+...||+|+.|-.|...+...+ -+ +..+...+.+-=. ++.=+||++.-+++....+.
T Consensus 485 ~~~~~~~~~~~ir~~L~~~Gf~Ev~tysf~~~~~~~~-~~----~~~~~i~l~NPis---~e~~~lR~SLlp~LL~~~~~ 556 (791)
T PRK00629 485 GLTEAQRLLRRLRRALAALGYQEVITYSFVSPEDAKL-FG----LNPEPLLLLNPIS---EELSVMRTSLLPGLLEAVAY 556 (791)
T ss_pred CCCHHHHHHHHHHHHHHHCCCcEEeccccCCHHHHHh-cC----CCCCeEEEeCCCc---hHHHHHHHhhHHHHHHHHHH
Confidence 4555667778889999999999999999988765421 11 1122333332111 23558999999888887776
Q ss_pred hHhhcCCCCeEEEEEeeeeec
Q 047998 197 WIHSYRDLPLLVNQWANVTRW 217 (558)
Q Consensus 197 ~i~s~rdLPlkl~q~~~vfR~ 217 (558)
..+ +...|+++|++|.||..
T Consensus 557 N~~-~~~~~i~lFEiG~Vf~~ 576 (791)
T PRK00629 557 NLN-RGNKDVALFEIGRVFLP 576 (791)
T ss_pred HHh-CCCCCEeEEeeeeeeCC
Confidence 653 44579999999999954
No 136
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=51.10 E-value=51 Score=33.07 Aligned_cols=73 Identities=21% Similarity=0.214 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCCCcEEEEeCCCCc------chhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHH
Q 047998 336 STRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKA------DEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGW 409 (558)
Q Consensus 336 ~eRli~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~------~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgk 409 (558)
.+.++...++ +.|-||.++|-.... =+-....+....+.+.|+++||+|.+....+ -.
T Consensus 72 t~em~~ia~~-------------~kP~~vtLVPEkr~E~TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDPd---~~ 135 (234)
T cd00003 72 TEEMLEIALE-------------VKPHQVTLVPEKREELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDPD---PE 135 (234)
T ss_pred CHHHHHHHHH-------------CCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCC---HH
Confidence 5566665554 358899999964321 0112234566788899999999999987653 45
Q ss_pred HHHHHHHcCCCEEEEe
Q 047998 410 KFNFWEMKGIPLRIEI 425 (558)
Q Consensus 410 k~~~ae~~GiP~~IiI 425 (558)
++..|...|++. |++
T Consensus 136 qi~~A~~~GAd~-VEL 150 (234)
T cd00003 136 QIEAAKEVGADR-VEL 150 (234)
T ss_pred HHHHHHHhCcCE-EEE
Confidence 899999999995 555
No 137
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=50.32 E-value=52 Score=39.07 Aligned_cols=87 Identities=10% Similarity=0.022 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcC
Q 047998 123 AIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYR 202 (558)
Q Consensus 123 ~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~r 202 (558)
..++.+++.+...||+|+.|-.|.+.+-+.+ .+. . ..+....+.+--. ++.=+||++.-+++....+...+ ++
T Consensus 495 ~~~~~~r~~L~~~Gf~Ev~tysl~s~~~~~~-~~~-~-~~~~~i~l~NPis---~e~s~lR~SLlpgLL~~~~~N~~-~~ 567 (798)
T TIGR00472 495 LLLRKLRTLLVGLGLNEVITYSLVSSEKAEK-FNF-P-KLENLVEIKNPLS---NERSVLRTSLLPSLLEVLAYNQN-RK 567 (798)
T ss_pred HHHHHHHHHHHHCCCcEEeccccCCHHHHHh-hcC-C-CCCceEEEeCCCc---hHHHHHHHhhHHHHHHHHHHHHh-CC
Confidence 3335778899999999999999988854422 221 1 0011344443211 23458999999988887776653 34
Q ss_pred CCCeEEEEEeeeee
Q 047998 203 DLPLLVNQWANVTR 216 (558)
Q Consensus 203 dLPlkl~q~~~vfR 216 (558)
.-|+++|++|.||.
T Consensus 568 ~~~~~lFEiG~V~~ 581 (798)
T TIGR00472 568 NKDVKIFEIGKVFA 581 (798)
T ss_pred CCCEeEEeeecccC
Confidence 66899999999994
No 138
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=49.97 E-value=55 Score=32.89 Aligned_cols=73 Identities=19% Similarity=0.131 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCCCcEEEEeCCCCc------chhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHH
Q 047998 336 STRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKA------DEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGW 409 (558)
Q Consensus 336 ~eRli~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~------~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgk 409 (558)
.+.++...++ +.|.||.++|-.... =+-....+....+.+.|+++||+|.+...++ -.
T Consensus 72 ~~emi~ia~~-------------vkP~~vtLVPEkr~ElTTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP~---~~ 135 (237)
T TIGR00559 72 TEEMIRIAEE-------------IKPEQVTLVPEARDEVTTEGGLDVARLKDKLCELVKRFHAAGIEVSLFIDAD---KD 135 (237)
T ss_pred CHHHHHHHHH-------------cCCCEEEECCCCCCCccCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeCCC---HH
Confidence 5667666554 358899999964321 0112234566788899999999999987542 46
Q ss_pred HHHHHHHcCCCEEEEe
Q 047998 410 KFNFWEMKGIPLRIEI 425 (558)
Q Consensus 410 k~~~ae~~GiP~~IiI 425 (558)
++..|...|++. |++
T Consensus 136 qi~~A~~~GAd~-VEL 150 (237)
T TIGR00559 136 QISAAAEVGADR-IEI 150 (237)
T ss_pred HHHHHHHhCcCE-EEE
Confidence 899999999985 555
No 139
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=47.17 E-value=61 Score=32.62 Aligned_cols=63 Identities=25% Similarity=0.255 Sum_probs=44.9
Q ss_pred CCCCcEEEEeCCCCc------chhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEEEEe
Q 047998 359 IAPIQVVIVPIWKKA------DEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEI 425 (558)
Q Consensus 359 lAP~qV~Iipi~~~~------~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~~IiI 425 (558)
+.|-||.++|-.... =+-....+....+.+.|+++||+|.+...+ --.++..|...|++. |++
T Consensus 85 ~kP~~vtLVPE~r~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFidP---~~~qi~~A~~~GAd~-VEL 153 (239)
T PRK05265 85 VKPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFIDP---DPEQIEAAAEVGADR-IEL 153 (239)
T ss_pred CCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCC---CHHHHHHHHHhCcCE-EEE
Confidence 358899999965321 011223456678889999999999988754 245899999999995 555
No 140
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=44.69 E-value=57 Score=32.83 Aligned_cols=73 Identities=21% Similarity=0.191 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCCCcEEEEeCCCCc------chhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHH
Q 047998 336 STRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKA------DEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGW 409 (558)
Q Consensus 336 ~eRli~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~------~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgk 409 (558)
.+.++...++. .|-||.++|-.... =+-....+....+.++|+++||+|.+....+ -.
T Consensus 73 t~e~~~ia~~~-------------kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiDP~---~~ 136 (239)
T PF03740_consen 73 TEEMVDIALKV-------------KPDQVTLVPEKREELTTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFIDPD---PE 136 (239)
T ss_dssp SHHHHHHHHHH---------------SEEEEE--SGGGBSTTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-S----HH
T ss_pred CHHHHHHHHhC-------------CcCEEEECCCCCCCcCCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeCCC---HH
Confidence 46677666553 48899999964211 0111234667788899999999999887652 46
Q ss_pred HHHHHHHcCCCEEEEe
Q 047998 410 KFNFWEMKGIPLRIEI 425 (558)
Q Consensus 410 k~~~ae~~GiP~~IiI 425 (558)
++..|...|++. |++
T Consensus 137 qi~~A~~~Gad~-VEL 151 (239)
T PF03740_consen 137 QIEAAKELGADR-VEL 151 (239)
T ss_dssp HHHHHHHTT-SE-EEE
T ss_pred HHHHHHHcCCCE-EEE
Confidence 899999999994 555
No 141
>COG2238 RPS19A Ribosomal protein S19E (S16A) [Translation, ribosomal structure and biogenesis]
Probab=38.82 E-value=68 Score=29.57 Aligned_cols=62 Identities=21% Similarity=0.329 Sum_probs=47.5
Q ss_pred cccCCCceeecCCCCcchHHHHHHHHHhccccccCCCCcceEeCchhHHHHHHHHHHHHHHHHH
Q 047998 71 SQDRGNRERVITPRSQDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKE 134 (558)
Q Consensus 71 ~~~~~~~~~~i~~~~~~~~~wy~~~~~~a~l~d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~ 134 (558)
.|++|++-+.-..-+-...+--.|-++++|++...+ +-..+-|.|..+.+++-..+.+++.+
T Consensus 80 ~k~rG~rP~~~~~gsgsI~RkilqqLE~~G~V~k~~--~GR~ltp~GrsllD~~a~ei~eel~~ 141 (147)
T COG2238 80 RKNRGSRPEKFRKGSGSIIRKVLQQLEKAGLVEKTP--KGRVLTPKGRSLLDRIATEIKEELEE 141 (147)
T ss_pred cccCCCCchhhhcCCchHHHHHHHHHHHCCceeecC--CCceeCccchhHHHHHHHHHHHHhcc
Confidence 456666555544445566676778899999998665 66889999999999999998888754
No 142
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=36.01 E-value=1.3e+02 Score=30.04 Aligned_cols=62 Identities=29% Similarity=0.312 Sum_probs=42.9
Q ss_pred CCCcEEEEeCCCCc------chhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEEEEe
Q 047998 360 APIQVVIVPIWKKA------DEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEI 425 (558)
Q Consensus 360 AP~qV~Iipi~~~~------~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~~IiI 425 (558)
.|-||.++|=.... -+-....+....+..+|++.||+|.+.-..+ ..++..+...|+|+ |++
T Consensus 84 kP~~vtLVPe~r~evTTegGlD~~~~~~~l~~~v~~L~~~GirVSLFiD~d---~~qi~aa~~~gA~~-IEL 151 (243)
T COG0854 84 KPHQVTLVPEKREEVTTEGGLDVAGQLDKLRDAVRRLKNAGIRVSLFIDPD---PEQIEAAAEVGAPR-IEL 151 (243)
T ss_pred CCCeEEeCCCchhhcccccchhhhhhhhhHHHHHHHHHhCCCeEEEEeCCC---HHHHHHHHHhCCCE-EEE
Confidence 47899999954211 0111224555678889999999999876542 45789999999996 444
No 143
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=32.19 E-value=1.7e+02 Score=24.81 Aligned_cols=77 Identities=10% Similarity=0.019 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEcCCCCccccccccccChHHHH
Q 047998 381 SAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILE 460 (558)
Q Consensus 381 ~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~ 460 (558)
-.+..|.+.+++.|+.+.+.-+....+...+...+....-++|++|..+... .|-.+.+. +..++++..
T Consensus 16 laa~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~~Ad~vi~~~~~~~~~------~rf~gk~v-----~~~~~~~~l 84 (96)
T cd05569 16 MAAEALEKAAKKLGWEIKVETQGSLGIENELTAEDIAEADAVILAADVPVDD------ERFAGKRV-----YEVSVAEAI 84 (96)
T ss_pred HHHHHHHHHHHHCCCeEEEEEecCcCccCcCCHHHHhhCCEEEEecCCCCch------hhhCCCeE-----EEecHHHHH
Confidence 4567888999999999998865432334444444555666899999776543 33333332 245666665
Q ss_pred HHHHHHHH
Q 047998 461 AYVKDKLD 468 (558)
Q Consensus 461 ~~i~~ll~ 468 (558)
..-...|+
T Consensus 85 ~~~~~vl~ 92 (96)
T cd05569 85 KDAEAVIE 92 (96)
T ss_pred HHHHHHHH
Confidence 55544444
No 144
>PF14116 YyzF: YyzF-like protein
Probab=31.99 E-value=28 Score=26.10 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=13.1
Q ss_pred CCccccccCCCcceEE
Q 047998 537 GNKTCFMTGNPAQEVA 552 (558)
Q Consensus 537 ~~~~C~~~g~~a~~~~ 552 (558)
.+.+|-+|+++|++.+
T Consensus 32 ~~~~C~~C~~~A~Y~V 47 (48)
T PF14116_consen 32 LPTTCEYCDQPAVYLV 47 (48)
T ss_pred CCCcchhhCCCceEEe
Confidence 3479999999998764
No 145
>PLN03194 putative disease resistance protein; Provisional
Probab=26.98 E-value=1.4e+02 Score=28.89 Aligned_cols=47 Identities=23% Similarity=0.191 Sum_probs=31.3
Q ss_pred CCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHHH
Q 047998 360 APIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFN 412 (558)
Q Consensus 360 AP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~ 412 (558)
.+++|.|---+.+ . -...+..|+..|+++||+|.+|+.+ ...|..+.
T Consensus 25 ~~yDVFISFrG~D-t----R~~FvshL~~aL~~~GI~vF~D~~e-l~~G~~i~ 71 (187)
T PLN03194 25 KPCDVFINHRGID-T----KRTIATLLYDHLSRLNLRPFLDNKN-MKPGDKLF 71 (187)
T ss_pred CCCcEEEeCCCcc-c----cccHHHHHHHHHHHCCCEEEEcCcc-ccCCCcHH
Confidence 3577777543332 1 1356789999999999999999854 34454443
No 146
>PHA02278 thioredoxin-like protein
Probab=26.60 E-value=53 Score=28.39 Aligned_cols=25 Identities=20% Similarity=0.040 Sum_probs=18.0
Q ss_pred ccHHHHHHHHhCCCEE----EeeCCCChh
Q 047998 490 SSYEELKEAISMGKWA----RGPWSASDA 514 (558)
Q Consensus 490 ~~~ee~k~al~~~~~v----~apwc~~~~ 514 (558)
+++++|.+.+.+++.+ -|||||.-.
T Consensus 2 ~~~~~~~~~i~~~~~vvV~F~A~WCgpCk 30 (103)
T PHA02278 2 NSLVDLNTAIRQKKDVIVMITQDNCGKCE 30 (103)
T ss_pred CCHHHHHHHHhCCCcEEEEEECCCCHHHH
Confidence 5788999988765533 459999743
No 147
>PF04052 TolB_N: TolB amino-terminal domain; InterPro: IPR007195 TolB is a periplasmic protein from Escherichia coli that is part of the Tol-dependent translocation system involving group A and E colicins that is used to penetrate and kill cells [, ]. TolB has two domains, an alpha-helical N-terminal domain that shares structural similarity with the C-terminal domain of transfer RNA ligases, and a beta-propeller C-terminal domain (IPR011042 from INTERPRO) that shares structural similarity with numerous members of the prolyl oligopeptidase family and, to a lesser extent, to class B metallo-beta-lactamases []. The function of the N-terminal domain is uncertain.; GO: 0015031 protein transport, 0042597 periplasmic space; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A.
Probab=26.02 E-value=1.2e+02 Score=25.83 Aligned_cols=78 Identities=17% Similarity=0.189 Sum_probs=39.6
Q ss_pred CCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCC-----CHHHHHHHHHHcCCCEEEEeCceecCCC
Q 047998 359 IAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQR-----TPGWKFNFWEMKGIPLRIEIGPRDVSSG 433 (558)
Q Consensus 359 lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~-----slgkk~~~ae~~GiP~~IiIG~kEl~~~ 433 (558)
..+..|+|.|+...+...+--...+.-|...|...|.---+|...-. .-.-.|..|..+|+.+++. |.=....+
T Consensus 10 ~~~~pIaV~~f~~~~~~~~~~~~i~~vi~~DL~~SG~F~~i~~~~~~~~~~~~~~~~~~~w~~~gad~lv~-G~v~~~g~ 88 (105)
T PF04052_consen 10 DQKIPIAVPPFQGDGGDAELGEDIAEVISNDLKRSGLFRVIDPSSFPQDPSSPSQVNFSDWRSLGADYLVT-GSVTQSGN 88 (105)
T ss_dssp GGSEEEEE---EESSSS-S-SS-HHHHHHHHHHHTTSEEE--GGG-S---SSGGG--HHHHHTTT-SEEEE-EEEEE-TT
T ss_pred CccCCEEEecCCCCCcccchhHHHHHHHHHHHHhCCCceEcCchhcccCCCccCCcCHHHHHHcCCCEEEE-EEEEECCC
Confidence 45677899888543211001124456688899999986666654311 2445789999999998655 43334433
Q ss_pred eEEE
Q 047998 434 SVVI 437 (558)
Q Consensus 434 ~V~I 437 (558)
.++|
T Consensus 89 ~~~v 92 (105)
T PF04052_consen 89 GLRV 92 (105)
T ss_dssp SEEE
T ss_pred EEEE
Confidence 2443
No 148
>PF01520 Amidase_3: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002508 The cell wall envelope of Gram-positive bacteria is a macromolecular, exoskeletal organelle that is assembled and turned over at designated sites. The cell wall also functions as a surface organelle that allows Gram-positive pathogens to interact with their environment, in particular the tissues of the infected host. All of these functions require that surface proteins and enzymes be properly targeted to the cell wall envelope. Two basic mechanisms, cell wall sorting and targeting, have been identified. Cell well sorting is the covalent attachment of surface proteins to the peptidoglycan via a C-terminal sorting signal that contains a consensus LPXTG sequence. More than 100 proteins that possess cell wall-sorting signals, including the M proteins of Streptococcus pyogenes, protein A of Staphylococcus aureus, and several internalins of Listeria monocytogenes, have been identified. Cell wall targeting involves the noncovalent attachment of proteins to the cell surface via specialised binding domains. Several of these wall-binding domains appear to interact with secondary wall polymers that are associated with the peptidoglycan, for example teichoic acids and polysaccharides. Proteins that are targeted to the cell surface include muralytic enzymes such as autolysins, lysostaphin, and phage lytic enzymes. Other examples for targeted proteins are the surface S-layer proteins of bacilli and clostridia, as well as virulence factors required for the pathogenesis of L. monocytogenes (internalin B) and Streptococcus pneumoniae (PspA) infections []. Autolysin 3.5.1.28 from EC hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell wall glycopeptides.; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3QAY_A 3CZX_A 1JWQ_A 1XOV_A 3NE8_A.
Probab=25.41 E-value=2.7e+02 Score=25.67 Aligned_cols=55 Identities=29% Similarity=0.227 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHHHHhhCCcEEEEeCCC--CCCHHHHHHHHHHcCCCEEEEeCcee
Q 047998 375 EKTGVLSAALSAKEVLQKSGIRVKLDDSD--QRTPGWKFNFWEMKGIPLRIEIGPRD 429 (558)
Q Consensus 375 ~~~~~~~~a~~I~~~Lr~~Girv~vD~r~--~~slgkk~~~ae~~GiP~~IiIG~kE 429 (558)
|.+-..+.|..|.+.|++.|++|.+.-.+ ..++..+...++..+.-+.|.|=-.-
T Consensus 22 E~~~~l~ia~~l~~~L~~~g~~V~~tr~~d~~~~l~~R~~~an~~~ad~~isiH~na 78 (175)
T PF01520_consen 22 EKDINLDIALRLKKELEKHGIKVYLTRDNDSDVSLQERAALANSWGADLFISIHFNA 78 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHTTEEEEESSSSSHCCCHHHHHHHHHHTTSSEEEEEEEE-
T ss_pred CCHHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhcccCEEEEEeecC
Confidence 34456788999999999999999985432 13799999999999999999986543
No 149
>PRK09333 30S ribosomal protein S19e; Provisional
Probab=25.04 E-value=2.1e+02 Score=26.79 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=40.2
Q ss_pred CcchHHHHHHHHHhccccccCCCCcceEeCchhHHHHHHHHHHHHHHHH
Q 047998 85 SQDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFK 133 (558)
Q Consensus 85 ~~~~~~wy~~~~~~a~l~d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~ 133 (558)
+....+.-.+.|+++|+++..+ |-..+.|.|....++|-..+.+.+.
T Consensus 94 sg~iiR~~LqqLE~~glVek~~--~GR~lT~~G~~~LD~iA~~i~~~~~ 140 (150)
T PRK09333 94 SGSIIRKILQQLEKAGLVEKTK--KGRVITPKGRSLLDNLAAEVKKELA 140 (150)
T ss_pred ccHHHHHHHHHHHHCCCeeeCC--CCCEeCHHHHHHHHHHHHHHHHHHH
Confidence 4556899999999999998765 7788999999999999988877774
No 150
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=23.83 E-value=1.7e+02 Score=24.64 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=12.2
Q ss_pred ccChHHHHHHHHHHHHHHHH
Q 047998 453 SMEPSILEAYVKDKLDEIQS 472 (558)
Q Consensus 453 ~v~~~el~~~i~~ll~~~~~ 472 (558)
.+++.++.++|...+....+
T Consensus 23 ~~~l~~l~~fl~~~l~~~~~ 42 (109)
T PF10367_consen 23 DWPLSDLSDFLCKSLRKYSN 42 (109)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 35667777776666654433
No 151
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=23.48 E-value=3.4e+02 Score=24.01 Aligned_cols=80 Identities=9% Similarity=0.036 Sum_probs=49.1
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEcCCCCccccccccccChHHHHH
Q 047998 382 AALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEA 461 (558)
Q Consensus 382 ~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~ 461 (558)
.+..|.+.-++.|+.+.++-+....+..++..-+....-++|++|..++.+. .|-.|.+. +.+++++.+.
T Consensus 21 AAeaL~kAA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~VIia~d~~~~~~-----~rF~gk~v-----~~~s~~~ai~ 90 (114)
T PRK10427 21 AAERLEKLCQLEKWGVKIETQGALGTENRLTDEDIRRADVVLLITDIELAGA-----ERFEHCRY-----VQCSIYAFLR 90 (114)
T ss_pred HHHHHHHHHHHCCCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEecCCCCch-----hhhCCCeE-----EEecHHHHHH
Confidence 4566777777789999998765334444555555566668999997764221 12233332 2567777766
Q ss_pred HHHHHHHHHH
Q 047998 462 YVKDKLDEIQ 471 (558)
Q Consensus 462 ~i~~ll~~~~ 471 (558)
.-...|+...
T Consensus 91 d~~~vl~~a~ 100 (114)
T PRK10427 91 EPQRVMSAVR 100 (114)
T ss_pred HHHHHHHHHH
Confidence 6666666543
No 152
>PTZ00095 40S ribosomal protein S19; Provisional
Probab=23.27 E-value=2.3e+02 Score=27.04 Aligned_cols=49 Identities=14% Similarity=0.245 Sum_probs=40.8
Q ss_pred CCcchHHHHHHHHHhccccccCCCCcceEeCchhHHHHHHHHHHHHHHH
Q 047998 84 RSQDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKF 132 (558)
Q Consensus 84 ~~~~~~~wy~~~~~~a~l~d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~ 132 (558)
-+....++-.|-|+++|+++..+-+|-+.+.|.|....++|-..+.+++
T Consensus 117 aSg~iiR~~LQqLE~~glVek~~~~~GR~lT~~Gr~~LD~iA~~v~~~l 165 (169)
T PTZ00095 117 ASGKILRWICQQLEKLGLVEQGPKKKGRRLTRKGCNFANAFARQVTIRK 165 (169)
T ss_pred CchHHHHHHHHHHHHCCCEEecCCCCCCEECHhHHHHHHHHHHHHHHHH
Confidence 4567789999999999999876556888999999999999987765543
No 153
>cd02696 MurNAc-LAA N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs
Probab=22.43 E-value=3.6e+02 Score=24.86 Aligned_cols=53 Identities=23% Similarity=0.234 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHhhCCcEEEEeCCCC--CCHHHHHHHHHHcCCCEEEEeCcee
Q 047998 377 TGVLSAALSAKEVLQKSGIRVKLDDSDQ--RTPGWKFNFWEMKGIPLRIEIGPRD 429 (558)
Q Consensus 377 ~~~~~~a~~I~~~Lr~~Girv~vD~r~~--~slgkk~~~ae~~GiP~~IiIG~kE 429 (558)
+...+.+..+...|++.|++|.+.-.++ .++..+...+...+.-+.|.|=-.-
T Consensus 25 ~~~~~ia~~l~~~L~~~G~~v~~~r~~~~~~~l~~r~~~an~~~~d~~islH~na 79 (172)
T cd02696 25 DINLAIALKLAKLLEAAGAKVVLTRDDDTFVSLSERVAIANRAGADLFISIHANA 79 (172)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEeecC
Confidence 4467888999999999999998753321 3799999999999999999885443
No 154
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=21.82 E-value=9.8e+02 Score=25.79 Aligned_cols=114 Identities=19% Similarity=0.230 Sum_probs=63.3
Q ss_pred EEEEeCCCCcc--hhHHHHHHHHHHHHHHhhCCcEEEE--eCCCCCCHHHHHHHHHHcC-CCEEEEeCceecCCCeEEEE
Q 047998 364 VVIVPIWKKAD--EKTGVLSAALSAKEVLQKSGIRVKL--DDSDQRTPGWKFNFWEMKG-IPLRIEIGPRDVSSGSVVIS 438 (558)
Q Consensus 364 V~Iipi~~~~~--~~~~~~~~a~~I~~~Lr~~Girv~v--D~r~~~slgkk~~~ae~~G-iP~~IiIG~kEl~~~~V~Ik 438 (558)
|=|||+-.+.+ ..+++...-..|.+.|...+|+|.- |..+ ...-.-=....... +||.||=+..+.+++.=+++
T Consensus 163 vNlIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~pyd~e~-~~~e~~e~~~~l~~~~PFAII~S~~~~~~~~~~vr 241 (373)
T COG5019 163 VNLIPVIAKADTLTDDELAEFKERIREDLEQYNIPVFDPYDPED-DEDESLEENQDLRSLIPFAIIGSNTEIENGGEQVR 241 (373)
T ss_pred cCeeeeeeccccCCHHHHHHHHHHHHHHHHHhCCceeCCCCccc-cchhhHHHHHHHhhcCCeEEEeccceeccCCceee
Confidence 55666643332 2345667777899999999999985 3322 12111111223333 99998888888887754444
Q ss_pred EcCCCCcccccccccc---ChHHH--------HHHHHHHHHHHHHHHHHHHHHHhh
Q 047998 439 RRDVPGKQGKVFGISM---EPSIL--------EAYVKDKLDEIQSALLERATSFRD 483 (558)
Q Consensus 439 ~rdt~ek~~~~~~v~v---~~~el--------~~~i~~ll~~~~~~L~~rA~~~~~ 483 (558)
-|.-.- |. |.| .-.|+ .+.+.+|.+.=+..+|++-+...-
T Consensus 242 gR~YpW--G~---v~Idd~~hsDF~~Lr~~Li~thL~~L~~~T~~~~YE~YR~e~L 292 (373)
T COG5019 242 GRKYPW--GV---VEIDDEEHSDFKKLRNLLIRTHLQELKETTENLLYENYRTEKL 292 (373)
T ss_pred eeccCC--cc---eecCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443221 00 011 11222 244666667667778887776543
No 155
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=20.44 E-value=5.4e+02 Score=21.91 Aligned_cols=69 Identities=23% Similarity=0.262 Sum_probs=42.4
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCHHHHHHH-HHHcCCCEEEEeCceecCCCeEEEEEcCCCCccccccccccChHHHHHH
Q 047998 384 LSAKEVLQKSGIRVKLDDSDQRTPGWKFNF-WEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAY 462 (558)
Q Consensus 384 ~~I~~~Lr~~Girv~vD~r~~~slgkk~~~-ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~ 462 (558)
..+.+.|.+.-+-+.+|..+ .-|.++.. ....+.|..++|+++ +|++.- +-.| .++.+++.+.
T Consensus 43 ~~v~~~l~~~~v~~~~d~~~--~e~~~~~~~~~~~~~P~~~~i~~~---~g~~l~--~~~G---------~~~~~~f~~~ 106 (114)
T cd02958 43 ESVKEFIRENFIFWQCDIDS--SEGQRFLQSYKVDKYPHIAIIDPR---TGEVLK--VWSG---------NITPEDLLSQ 106 (114)
T ss_pred HHHHHHHHhCEEEEEecCCC--ccHHHHHHHhCccCCCeEEEEeCc---cCcEeE--EEcC---------CCCHHHHHHH
Confidence 46777777766777777654 34555433 356799999999976 343322 2223 3455777777
Q ss_pred HHHHHH
Q 047998 463 VKDKLD 468 (558)
Q Consensus 463 i~~ll~ 468 (558)
+++.++
T Consensus 107 L~~~~~ 112 (114)
T cd02958 107 LIEFLE 112 (114)
T ss_pred HHHHHh
Confidence 666543
Done!