Query 047998
Match_columns 558
No_of_seqs 294 out of 2152
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 08:49:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047998.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047998hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ial_A Prolyl-tRNA synthetase; 100.0 3E-115 1E-119 949.5 42.7 475 78-558 14-518 (518)
2 4hvc_A Bifunctional glutamate/ 100.0 3E-114 9E-119 944.2 47.5 476 77-558 19-519 (519)
3 1hc7_A Prolyl-tRNA synthetase; 100.0 1E-110 4E-115 912.6 44.9 470 79-558 5-477 (477)
4 1nj1_A PROR, proline-tRNA synt 100.0 5E-104 2E-108 864.8 43.5 461 84-558 36-501 (501)
5 1nj8_A Proline-tRNA synthetase 100.0 1E-101 3E-106 839.5 41.3 451 83-558 2-459 (459)
6 3uh0_A Threonyl-tRNA synthetas 100.0 7.9E-70 2.7E-74 588.8 28.5 363 89-470 34-459 (460)
7 1qf6_A THRRS, threonyl-tRNA sy 100.0 1.5E-63 5.3E-68 560.1 29.9 366 77-469 217-634 (642)
8 2i4l_A Proline-tRNA ligase; al 100.0 3.8E-62 1.3E-66 529.9 29.2 359 88-463 38-457 (458)
9 1evl_A Threonyl-tRNA synthetas 100.0 1.1E-61 3.7E-66 518.1 27.9 352 91-468 2-392 (401)
10 2j3l_A Prolyl-tRNA synthetase; 100.0 4.1E-61 1.4E-65 535.5 31.9 359 90-468 21-565 (572)
11 3a32_A Probable threonyl-tRNA 100.0 8.9E-61 3E-65 520.8 27.4 357 106-479 37-458 (471)
12 1nyr_A Threonyl-tRNA synthetas 100.0 9.6E-60 3.3E-64 530.8 27.6 368 77-468 216-640 (645)
13 1ati_A Glycyl-tRNA synthetase; 100.0 2.6E-56 8.8E-61 488.5 27.6 364 89-467 5-503 (505)
14 2zt5_A Glycyl-tRNA synthetase; 100.0 1.9E-53 6.5E-58 479.4 30.9 411 51-500 30-670 (693)
15 1g5h_A Mitochondrial DNA polym 100.0 2.6E-54 8.9E-59 466.1 15.4 375 78-472 9-442 (454)
16 3ikl_A DNA polymerase subunit 100.0 3.4E-50 1.2E-54 429.9 27.4 340 92-470 69-450 (459)
17 1h4v_B Histidyl-tRNA synthetas 100.0 1E-48 3.4E-53 420.2 29.1 332 104-467 3-420 (421)
18 1htt_A Histidyl-tRNA synthetas 100.0 1E-48 3.5E-53 420.3 28.5 335 103-467 3-422 (423)
19 1qe0_A Histidyl-tRNA synthetas 100.0 5.2E-49 1.8E-53 422.1 22.7 330 104-464 2-419 (420)
20 4e51_A Histidine--tRNA ligase; 100.0 1.1E-47 3.6E-52 417.2 26.0 338 101-467 29-458 (467)
21 1wu7_A Histidyl-tRNA synthetas 100.0 3E-48 1E-52 418.3 21.4 330 103-468 5-426 (434)
22 3net_A Histidyl-tRNA synthetas 100.0 1.4E-45 4.8E-50 400.5 23.2 338 95-467 3-464 (465)
23 4g85_A Histidine-tRNA ligase, 100.0 3.7E-45 1.3E-49 402.4 24.2 337 103-468 66-514 (517)
24 4g84_A Histidine--tRNA ligase, 100.0 1.2E-44 4E-49 393.0 25.5 339 97-468 8-461 (464)
25 2dq0_A Seryl-tRNA synthetase; 100.0 3.2E-45 1.1E-49 394.6 16.7 264 90-363 160-438 (455)
26 1wle_A Seryl-tRNA synthetase; 100.0 1.8E-43 6.2E-48 383.3 19.8 279 83-367 178-473 (501)
27 3lc0_A Histidyl-tRNA synthetas 100.0 3.5E-43 1.2E-47 380.2 20.2 322 101-446 26-439 (456)
28 3vbb_A Seryl-tRNA synthetase, 100.0 2.1E-43 7.3E-48 381.7 18.2 280 90-372 168-473 (522)
29 2dq3_A Seryl-tRNA synthetase; 100.0 1.6E-43 5.6E-48 379.0 16.3 276 82-368 130-423 (425)
30 3qne_A Seryl-tRNA synthetase, 100.0 1.1E-42 3.8E-47 373.7 16.0 278 87-372 148-447 (485)
31 1ses_A Seryl-tRNA synthetase; 100.0 1.2E-42 4E-47 371.7 15.3 270 84-363 127-412 (421)
32 2cja_A Seryl-tRNA synthetase; 100.0 2.2E-42 7.7E-47 376.0 14.4 275 77-362 190-511 (522)
33 3err_A Fusion protein of micro 100.0 3E-41 1E-45 369.3 17.2 269 83-362 235-520 (536)
34 3lss_A Seryl-tRNA synthetase; 100.0 8.4E-41 2.9E-45 359.5 19.0 276 89-372 173-472 (484)
35 3od1_A ATP phosphoribosyltrans 100.0 1.2E-31 3.9E-36 285.6 18.8 293 104-430 10-394 (400)
36 3mf2_A BLL0957 protein; aminoa 100.0 1.1E-29 3.9E-34 260.4 14.0 244 101-358 47-325 (346)
37 1z7m_A ATP phosphoribosyltrans 99.9 5.8E-27 2E-31 244.8 14.5 153 101-262 19-173 (344)
38 3rac_A Histidine-tRNA ligase; 99.9 3.8E-26 1.3E-30 240.9 14.0 163 89-262 9-180 (373)
39 1usy_A ATP phosphoribosyltrans 99.7 5.8E-18 2E-22 171.5 8.3 116 122-262 4-123 (275)
40 1v95_A Nuclear receptor coacti 99.7 2E-16 6.8E-21 141.1 10.0 100 360-472 7-110 (130)
41 3dsq_A Pyrrolysyl-tRNA synthet 99.6 3.4E-15 1.2E-19 152.0 10.4 134 118-261 70-204 (288)
42 3qtc_A Pyrrolysyl-tRNA synthet 99.2 3.2E-11 1.1E-15 122.8 12.1 125 121-259 79-206 (290)
43 1nnh_A Asparaginyl-tRNA synthe 99.1 4.5E-10 1.5E-14 114.5 12.0 122 114-253 11-137 (294)
44 1wyd_A Hypothetical aspartyl-t 98.8 3.5E-08 1.2E-12 105.5 13.6 120 116-259 132-253 (429)
45 1x54_A Asparaginyl-tRNA synthe 98.8 4.3E-08 1.5E-12 105.0 13.6 114 116-253 133-247 (434)
46 1eov_A ASPRS, aspartyl-tRNA sy 98.7 9.2E-08 3.2E-12 103.8 13.2 121 116-259 176-299 (487)
47 1n9w_A Aspartyl-tRNA synthetas 98.7 5.8E-08 2E-12 103.6 10.9 120 116-259 123-245 (422)
48 3a74_A Lysyl-tRNA synthetase; 98.6 1.8E-07 6.3E-12 101.5 14.0 121 117-259 173-295 (493)
49 3a5y_A GENX, putative lysyl-tR 98.5 4.3E-07 1.5E-11 94.4 11.7 120 116-253 34-155 (345)
50 1e1o_A Lysyl-tRNA synthetase, 98.4 1.6E-06 5.5E-11 94.3 13.8 121 117-259 182-304 (504)
51 2xgt_A Asparaginyl-tRNA synthe 98.2 4.2E-06 1.4E-10 89.6 11.7 120 116-259 130-251 (435)
52 3nem_A Aspartyl-tRNA synthetas 98.2 9.9E-06 3.4E-10 86.7 13.4 121 117-260 136-259 (438)
53 3bju_A Lysyl-tRNA synthetase; 98.0 5.3E-05 1.8E-09 82.8 14.1 123 117-260 175-298 (521)
54 2du3_A O-phosphoseryl-tRNA syn 97.9 0.00015 5.1E-09 78.9 16.3 60 179-241 180-240 (534)
55 4ex5_A Lysine--tRNA ligase; st 97.9 9.7E-05 3.3E-09 80.5 14.7 121 117-259 203-325 (529)
56 1c0a_A Aspartyl tRNA synthetas 97.9 6E-05 2E-09 83.5 13.1 119 117-259 137-259 (585)
57 3m4p_A Ehasnrs, asparaginyl-tR 97.9 5.8E-05 2E-09 81.2 12.5 119 117-259 155-275 (456)
58 1l0w_A Aspartyl-tRNA synthetas 97.9 7E-05 2.4E-09 82.8 13.0 119 117-259 143-265 (580)
59 4ah6_A Aspartate--tRNA ligase, 97.8 0.00014 4.7E-09 80.7 12.5 115 117-253 147-262 (617)
60 1b7y_A Phers, protein (phenyla 97.7 0.00033 1.1E-08 72.7 13.6 117 117-240 99-226 (350)
61 3l4g_A Phenylalanyl-tRNA synth 97.7 7.6E-05 2.6E-09 80.8 9.0 123 116-240 222-380 (508)
62 3i7f_A Aspartyl-tRNA synthetas 97.6 0.00038 1.3E-08 76.1 13.0 120 117-259 243-365 (548)
63 2rhq_A Phenylalanyl-tRNA synth 97.5 0.00052 1.8E-08 69.6 11.4 110 118-240 52-165 (294)
64 3pco_A Phenylalanyl-tRNA synth 97.2 0.00037 1.3E-08 71.5 6.7 108 117-240 105-216 (327)
65 2du7_A O-phosphoseryl-tRNA syn 97.0 0.0043 1.5E-07 67.5 12.4 120 118-240 56-251 (549)
66 2odr_B Phosphoseryl-tRNA synth 96.7 0.012 4E-07 64.8 13.1 120 118-240 64-258 (648)
67 2odr_A Phosphoseryl-tRNA synth 96.7 0.012 4.1E-07 64.8 13.1 120 118-240 64-258 (665)
68 2odr_D Phosphoseryl-tRNA synth 96.7 0.012 4.2E-07 64.8 13.1 120 118-240 64-258 (685)
69 2odr_C Phosphoseryl-tRNA synth 96.7 0.013 4.4E-07 64.8 13.1 120 118-240 64-258 (701)
70 3l4g_B Phenylalanyl-tRNA synth 95.6 0.072 2.5E-06 59.0 12.5 113 120-241 392-505 (589)
71 2rhq_B Phenylalanyl-tRNA synth 93.7 0.51 1.8E-05 54.0 13.5 111 117-240 491-603 (795)
72 3ica_A Phenylalanyl-tRNA synth 93.3 0.74 2.5E-05 43.9 12.0 112 121-240 6-122 (213)
73 3ig2_A Phenylalanyl-tRNA synth 92.7 0.6 2E-05 44.5 10.4 111 121-239 6-121 (213)
74 3cmq_A Phenylalanyl-tRNA synth 92.5 0.52 1.8E-05 49.8 10.4 103 119-238 48-163 (415)
75 1b7y_B Phers, protein (phenyla 91.7 1.3 4.4E-05 50.6 13.2 105 117-241 487-593 (785)
76 3pco_B Phenylalanyl-tRNA synth 62.9 40 0.0014 38.4 11.6 88 123-220 493-581 (795)
77 1m5w_A Pyridoxal phosphate bio 52.1 27 0.00093 33.8 6.7 73 336-425 76-154 (243)
78 3gk0_A PNP synthase, pyridoxin 49.2 27 0.00094 34.3 6.2 73 336-425 104-182 (278)
79 2ec4_A FAS-associated factor 1 33.8 82 0.0028 28.7 6.7 77 384-474 81-174 (178)
80 3o6c_A PNP synthase, pyridoxin 33.7 31 0.0011 33.6 3.9 73 336-425 75-151 (260)
81 1jwq_A N-acetylmuramoyl-L-alan 27.8 1.5E+02 0.0053 26.8 7.5 51 376-427 27-81 (179)
82 3eyt_A Uncharacterized protein 24.7 2.7E+02 0.0094 23.1 8.3 59 395-468 94-152 (158)
83 3zzx_A Thioredoxin; oxidoreduc 23.2 43 0.0015 27.3 2.5 27 486-512 2-34 (105)
84 3pwf_A Rubrerythrin; non heme 21.1 1.3E+02 0.0046 27.1 5.6 56 467-552 112-167 (170)
No 1
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=3e-115 Score=949.54 Aligned_cols=475 Identities=34% Similarity=0.580 Sum_probs=449.5
Q ss_pred eeecCCCCcchHHHHHHHHHhcccccc-CCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhc
Q 047998 78 ERVITPRSQDFNAWYLDVISNAELADY-GPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEAS 156 (558)
Q Consensus 78 ~~~i~~~~~~~~~wy~~~~~~a~l~d~-~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sg 156 (558)
+.-.+++++||++||++++.++||+|+ ++++|+++|+|.|+++|++|++++++.++++||++|+||+|++.++|.+++|
T Consensus 14 ~~~~~~~~~~f~~wy~~l~~~aglid~r~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sg 93 (518)
T 3ial_A 14 TFSLTKTRDTFADWFDAIMDAAELVDRRYPVKGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESD 93 (518)
T ss_dssp CCCCCCCTTTHHHHHHHHHHHTTCEETTSSSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHH
T ss_pred EEecCcccccccHHHHHHHHHCCCcccCCCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcC
Confidence 344567889999999999999999998 7899999999999999999999999999999999999999999999988899
Q ss_pred CccccCCceEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCC-CCCCccccceEEEecc
Q 047998 157 HVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEM-RTKPFVRTLEFLWQEG 235 (558)
Q Consensus 157 h~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~-~~rGllR~REF~q~d~ 235 (558)
|+++|.+|||+|+++|+.+++++++||||+|++++.+|++|++||++||+|+|||++|||||. +++||+|+|||+|+|+
T Consensus 94 h~~~f~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~~~~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~ 173 (518)
T 3ial_A 94 HIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEA 173 (518)
T ss_dssp HHHHHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEE
T ss_pred CcccccccEEEEecCCCcccCcceeECCCCcHHHHHHHHhhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeE
Confidence 999999999999998866667899999999999999999999999999999999999999994 5889999999999999
Q ss_pred eeeeCChHHHHHHHHHHHHHHHHHHHhhCCceEEeecCCchhhccCCCcceEEEEEEcCccceeecceEecCcccccccC
Q 047998 236 HTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGDKRALQAGTSHNLGQNFSLAFG 315 (558)
Q Consensus 236 h~~~~~~~~a~~e~~~il~~y~~l~~~~l~ipv~~g~k~~~ekf~Ga~~~~~ie~~~~dgr~lq~gti~~Lg~~~s~~f~ 315 (558)
|+||++++++++|+..|+++|.+++.+.|++|+..+.++.+++|.||.++++||++|+|||++|+||+|+||++||++|+
T Consensus 174 h~f~~~~e~a~~e~~~~l~~~~~i~~~~LGlp~~~~~~~~~e~~~gA~yt~~iE~~~pdgr~ie~gt~~~Lg~~~s~rf~ 253 (518)
T 3ial_A 174 HCCHATAEDAVSQLSDYWKVIDTIFSDELCFKGQKLRRVCWDRFPGADYSEVSDVVMPCGRVLQTAGIHNLGQRFSSTFD 253 (518)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHHTTTTCCCCEEEEECGGGCCTTCSEEEEEEEECTTSCEEEEEEEEEEETHHHHHTT
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeeecChhhccCCCccceEEEEEcCCCCEEEEeceecccchhhhhcC
Confidence 99999999999999999999999994559999999988889999999999999999999999999999999999999999
Q ss_pred eEEeCCCCceeeEeeeccchHHHHHHHHHHHhCCCCCCCCCCCCCCCcEEEEeCCCCc----chhHHHHHHHHHHHHHHh
Q 047998 316 TQFTDENGQRQHVWQTSWAISTRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKA----DEKTGVLSAALSAKEVLQ 391 (558)
Q Consensus 316 i~y~d~~g~~~~v~~~s~Gi~eRli~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~----~~~~~~~~~a~~I~~~Lr 391 (558)
++|.|++|+.+++|++|||+++|+|++|+|+|+|++|++||+++||+||+|||+..++ ++.+.+.++|.+|++.|+
T Consensus 254 i~y~d~~g~~~~~h~~~~G~~~R~iaaliE~~~de~Gl~lP~~LAP~qV~IiPi~~~~~~~~~~~~~~~~~a~~l~~~L~ 333 (518)
T 3ial_A 254 ILYANKANESVHPYLTCAGISTRVLACALSIHGDSGGLVLPPLIAPIHVVIIPIGCGKKNNQESDQQVLGKVNEIADTLK 333 (518)
T ss_dssp CCEECTTCCEECCEEEEEEEETHHHHHHHHHHCBTTBCCCCGGGCSCSEEEEEESCSCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cEEECCCCCEeeeEEeccchHHHHHHHHHHHhCCCCccccCCccceEEEEEEEeecCccccccchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998543 122468999999999999
Q ss_pred hC-CcEEEEeCCCCCCHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEcCCCC--ccccccccccChHHH---------
Q 047998 392 KS-GIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPG--KQGKVFGISMEPSIL--------- 459 (558)
Q Consensus 392 ~~-Girv~vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~e--k~~~~~~v~v~~~el--------- 459 (558)
++ ||||++|+|++.++|+||++|+++|||++|+||++|+++|+|+|++|++++ +. .|++++|
T Consensus 334 ~~~Girv~~Ddr~~~s~G~K~~~ael~GvP~~i~vG~ke~e~g~V~vr~Rd~~~~~k~------~v~~~el~~~~~~~~~ 407 (518)
T 3ial_A 334 SKLGLRVSIDDDFSKSMGDKLYYYELKGVPLRIEVGQRDLANGQCIVVPRDVGKDQKR------VIPITEVMKVSSHTTE 407 (518)
T ss_dssp HTTCCCEEECCCTTSCHHHHHHHHHHTTCSEEEEEEHHHHHTTEEEEEETTTCGGGCE------EEEHHHHHCCC-----
T ss_pred hccCeEEEEECCCCCCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECCCCcccee------EeeHHHHhhhhhhhhh
Confidence 99 999999999336999999999999999999999999999999999999998 65 7899999
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHhhcCeeecccHHHHHHHHhC-CCEEEeeCCCCh----hhHHHHHHHhCCccc
Q 047998 460 ------EAYVKDKLDEIQSALLERATSFRDSNIVDVSSYEELKEAISM-GKWARGPWSASD----ADELKVKEETGATIR 528 (558)
Q Consensus 460 ------~~~i~~ll~~~~~~L~~rA~~~~~~~i~~v~~~ee~k~al~~-~~~v~apwc~~~----~ce~~ik~~~~a~~~ 528 (558)
++.|.++|++||++||+||+++++++|+.+++|+||++++++ +||+++||||+. +||++||++||||+|
T Consensus 408 ~~~~~~~~~~~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~~ 487 (518)
T 3ial_A 408 NHELVVKNVIKDELDAYKARLKEKAFAFHNSMVTNCKSFDEIVACIENKGGLARFPFYTTEADGEVWDKKLKDACSAEIR 487 (518)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHTEEECSSHHHHHHHHHHTCSEEEEEESCSSGGGHHHHHHHHHHHSCEEE
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHhCEEEcCCHHHHHHHHhcCCCEEEEEecCCCccchHHHHHHHHHhCCeEe
Confidence 899999999999999999999999999999999999999976 589999999999 999999999999999
Q ss_pred ccccCC-CCCCccccccCCCcceEEEEeecC
Q 047998 529 CFPFEQ-PQGNKTCFMTGNPAQEVALFAKSY 558 (558)
Q Consensus 529 cip~~~-~~~~~~C~~~g~~a~~~~~~~rsY 558 (558)
||||++ +..+++|++||+||++|+||||||
T Consensus 488 ~~p~~~~~~~~~~c~~~g~~a~~~~~~~~~y 518 (518)
T 3ial_A 488 GHNPDENVLPGEVCALSGKPAVCYMYCAKSY 518 (518)
T ss_dssp EECTTSCCCTTCBCTTTCSBCSEEEEEECBC
T ss_pred ccccccCCCCCCeeeccCCcceEEEEEEEeC
Confidence 999998 445689999999999999999999
No 2
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-114 Score=944.16 Aligned_cols=476 Identities=41% Similarity=0.755 Sum_probs=446.4
Q ss_pred ceeecCC-CCcchHHHHHHHHHhccccccCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhh
Q 047998 77 RERVITP-RSQDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEA 155 (558)
Q Consensus 77 ~~~~i~~-~~~~~~~wy~~~~~~a~l~d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~s 155 (558)
+..||+. +++||++||++++++++|+|+.+++|+++|+|.|+.+|++|++++++.++++||++|+||+|++.++|.+++
T Consensus 19 ~~~~~~~~~~~~f~~wy~~l~~~~~lid~~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~s 98 (519)
T 4hvc_A 19 TRLGLEAKKEENLADWYSQVITKSEMIEYHDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEK 98 (519)
T ss_dssp ----CCSCTTTCHHHHHHHHHHHTTCEEECSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSC
T ss_pred ceecCccCcccCchHHHHHHHHHCCCeEecCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhccc
Confidence 5567875 568999999999999999999899999999999999999999999999999999999999999999998889
Q ss_pred cCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecC-CCCCCccccceEEEec
Q 047998 156 SHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWE-MRTKPFVRTLEFLWQE 234 (558)
Q Consensus 156 gh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E-~~~rGllR~REF~q~d 234 (558)
||+++|.+|||+|++.|+++|+++++||||+|++++.+|++|++||++||+|+||||+||||| ++++||+|+|||+|+|
T Consensus 99 Gh~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~~~~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e 178 (519)
T 4hvc_A 99 THVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQE 178 (519)
T ss_dssp CSCGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEE
T ss_pred CCcccccccceEEeccCCcccccceeeCCCCcHHHHHHHHhhccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEee
Confidence 999999999999999988777789999999999999999999999999999999999999999 5588999999999999
Q ss_pred ceeeeCChHHHHHHHHHHHHHHHHHHHhhCCceEEeecCCchhhccCCCcceEEEEEEc-CccceeecceEecCcccccc
Q 047998 235 GHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMG-DKRALQAGTSHNLGQNFSLA 313 (558)
Q Consensus 235 ~h~~~~~~~~a~~e~~~il~~y~~l~~~~l~ipv~~g~k~~~ekf~Ga~~~~~ie~~~~-dgr~lq~gti~~Lg~~~s~~ 313 (558)
+|+||++++++++|+..++++|.+++.+++++|+..+.+++.++|.|+.++|++|++++ +||++|+||+|+||++||++
T Consensus 179 ~h~~~~~~e~a~~E~~~~l~~~~~i~~~ll~lp~~~~~~t~~e~~~Ga~~t~~iEa~~p~~gr~~q~gT~~~Lg~~~s~~ 258 (519)
T 4hvc_A 179 GHSAFATMEEAAEEVLQILDLYAQVYEELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISASGRAIQGGTSHHLGQNFSKM 258 (519)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHHTTSCCCCEEEECCTTTSCTTSSEEEEEEEEETTTTEEEEEEEEEEEETHHHHH
T ss_pred EEEEecCHHHHHHHHHHHHHHHHHHHHHhcCCcceeeecCCccccCCchhheeeeeeeccCCCEEeecccccccchhhhh
Confidence 99999999999999999999999999886699999998889999999999999999995 79999999999999999999
Q ss_pred cCeEEeCC--CCceeeEeeeccchHHHHHHHHHHHhCCCCCCCCCCCCCCCcEEEEeCCC----CcchhHHHHHHHHHHH
Q 047998 314 FGTQFTDE--NGQRQHVWQTSWAISTRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWK----KADEKTGVLSAALSAK 387 (558)
Q Consensus 314 f~i~y~d~--~g~~~~v~~~s~Gi~eRli~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~----~~~~~~~~~~~a~~I~ 387 (558)
|+++|.|+ +|+.+++|++|||+.+|+|++|+|+|+|+.|++||+++||+||+|||++. ++++.+.+.++|.+|+
T Consensus 259 ~~i~y~d~~~~g~~~~vh~~~~Gi~~R~l~aliE~~~d~~gl~~P~~laP~qV~Iipi~~~~~~~~~~~e~~~~~a~~l~ 338 (519)
T 4hvc_A 259 FEIVFEDPKIPGEKQFAYQNSWGLTTRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYR 338 (519)
T ss_dssp HTCEEECTTSTTCEEECEEEEEEEETHHHHHHHHHHCBTTBCCCCTTTCSCSEEEEECCC---CCHHHHHHHHHHHHHHH
T ss_pred cCcEEeccccCCCEEEEEEccccHHHHHHHHHHHHhCccccccccccCCCeEEEEEEecCcccccchhhHHHHHHHHHHH
Confidence 99999996 58888999999999999999999999999999999999999999999974 2222356889999999
Q ss_pred HHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEcCCCCccccccccccChHHHHHHHHHHH
Q 047998 388 EVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKL 467 (558)
Q Consensus 388 ~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~ll 467 (558)
+.|+++||+|++|++++.++|+||++|+++||||+|+||++|+++|+|+|++|++++|. .|++++|++.|+++|
T Consensus 339 ~~L~~~Girv~~Ddr~~~s~G~K~~~ael~GiP~~ivIG~kele~g~V~vr~R~tgeq~------~v~~~el~~~l~~ll 412 (519)
T 4hvc_A 339 RRLLSVNIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVRRDTGEKL------TVAENEAETKLQAIL 412 (519)
T ss_dssp HHHHHTTCCEEECCCSSSCHHHHHHHHHHTTCSEEEEECHHHHHHTEEEEEETTTCCEE------EEEGGGHHHHHHHHH
T ss_pred HHHHHCCCEEEEECCCCCCHHHHHHHHHhcCCCEEEEECchhhcCCeEEEEECCCCCcc------ceeHHHHHHHHHHHH
Confidence 99999999999999984589999999999999999999999999999999999999887 799999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCeeecccHHHHHHHHhCCCEEEeeCCCChhhHHHHHHHh-------------CCcccccccCC
Q 047998 468 DEIQSALLERATSFRDSNIVDVSSYEELKEAISMGKWARGPWSASDADELKVKEET-------------GATIRCFPFEQ 534 (558)
Q Consensus 468 ~~~~~~L~~rA~~~~~~~i~~v~~~ee~k~al~~~~~v~apwc~~~~ce~~ik~~~-------------~a~~~cip~~~ 534 (558)
++||++||+||++++++||+.+++|+||+++++++|||++||||+.+||++||++| |||+|||||+|
T Consensus 413 ~~i~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~e~~ik~~~~~~~~~~~~~~~~~~~~~~~p~~~ 492 (519)
T 4hvc_A 413 EDIQVTLFTRASEDLKTHMVVANTMEDFQKILDSGKIVQIPFCGEIDCEDWIKKTTARDQDLEPGAPSMGAKSLCIPFKP 492 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHEEECCSHHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHHC----------CCCEEEEEESSC
T ss_pred HHHHHHHHHHHHHHHHhCEEEcCCHHHHHHHHhcCCEEEEeccCCHHHHHHHHHHhccccccccccccCCceeeeccCCC
Confidence 99999999999999999999999999999999999999999999999999999996 79999999999
Q ss_pred CC---CCccccccCCCcceEEEEeecC
Q 047998 535 PQ---GNKTCFMTGNPAQEVALFAKSY 558 (558)
Q Consensus 535 ~~---~~~~C~~~g~~a~~~~~~~rsY 558 (558)
+. .+++|++||+||+.|+||||||
T Consensus 493 ~~~~~~~~~c~~~~~~a~~~~~~~~~y 519 (519)
T 4hvc_A 493 LCELQPGAKCVCGKNPAKYYTLFGRSY 519 (519)
T ss_dssp SSCCCTTCBCCC--CBCCEEEEEECBC
T ss_pred cccCCCCCcccccCCcceEEEEEEEeC
Confidence 74 4579999999999999999999
No 3
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=100.00 E-value=1.1e-110 Score=912.55 Aligned_cols=470 Identities=56% Similarity=0.944 Sum_probs=440.3
Q ss_pred eecCCCCcchHHHHHHHHHhccccccCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCc
Q 047998 79 RVITPRSQDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHV 158 (558)
Q Consensus 79 ~~i~~~~~~~~~wy~~~~~~a~l~d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~ 158 (558)
.+||++++||++||.+++.+++|+++++++|+++|+|.|+.+|++|++++++.|+++||++|+||+|++.++|.+++||+
T Consensus 5 ~~~~~~~~~f~~~~~~l~~~~~li~~~~~~G~~d~lP~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~ 84 (477)
T 1hc7_A 5 KGLTPQSQDFSEWYLEVIQKAELADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHV 84 (477)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTTSEEECSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC-------
T ss_pred ccCCCcccCchHHHHHHHHHCCCeeecCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred cccCCceEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceee
Q 047998 159 EGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTA 238 (558)
Q Consensus 159 ~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~ 238 (558)
++|.+|||+|+|+|+.+++++++||||+|++++++|+++++||++||+|+||||+|||||.+|+||+|+|||+|+|+|+|
T Consensus 85 d~f~~emy~~~d~g~~~l~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~ 164 (477)
T 1hc7_A 85 EGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTA 164 (477)
T ss_dssp --CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEE
T ss_pred cccccceEEEECCCCccCCCeEEEcCCCcHHHHHHHHhhhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEE
Confidence 99999999999998666678999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCChHHHHHHHHHHHHHHHHHHHhhCCceEEeecCCchhhccCCCcceEEEEEEcCccceeecceEecCcccccccCeEE
Q 047998 239 HATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGDKRALQAGTSHNLGQNFSLAFGTQF 318 (558)
Q Consensus 239 ~~~~~~a~~e~~~il~~y~~l~~~~l~ipv~~g~k~~~ekf~Ga~~~~~ie~~~~dgr~lq~gti~~Lg~~~s~~f~i~y 318 (558)
|++++++++|+..|+++|.+++.+.|++|+..+.+++.++|+|+..+|++|++++|||++|+||+|+||++++++||++|
T Consensus 165 ~~~~~~ad~E~~~~l~~~~~i~~~~Lgl~~~~~~~~~~e~~~g~~~~~~ie~~~~dgr~~~~gt~~~lg~~~s~~~g~~y 244 (477)
T 1hc7_A 165 HATREEAEEEVRRMLSIYARLAREYAAIPVIEGLKTEKEKFAGAVYTTTIEALMKDGKALQAGTSHYLGENFARAFDIKF 244 (477)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCTTTSCTTSSEEEEEEEECTTSCEEEEEEEEEEETHHHHHTTCEE
T ss_pred eCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCChHHhcCCcccceEEEEEcCCCcEEEEeeeEEcccccccccCeEE
Confidence 99999999999999999999994458999988988889999999999999999999999999999999999999999999
Q ss_pred eCCCCceeeEeeeccchHHHHHHHHHHHhCCCCCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEE
Q 047998 319 TDENGQRQHVWQTSWAISTRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVK 398 (558)
Q Consensus 319 ~d~~g~~~~v~~~s~Gi~eRli~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~ 398 (558)
.+.+|+.+++|++|||+.+|+|++|+|+|+|++|++||+++||+||+|+|++.+++ .+++.++|.+|++.|+++|++|+
T Consensus 245 ~~~~G~~~~~~~~~~GigeRli~~lie~~~d~~gl~~P~~laP~qV~Iipi~~~~~-~~~~~~~a~~l~~~Lr~~Gi~v~ 323 (477)
T 1hc7_A 245 QDRDLQVKYVHTTSWGLSWRFIGAIIMTHGDDRGLVLPPRLAPIQVVIVPIYKDES-RERVLEAAQGLRQALLAQGLRVH 323 (477)
T ss_dssp ECTTSCEEECEEEEEEEETHHHHHHHHHHCBTTBCCCCTTTCSCSEEEEECCCTTT-HHHHHHHHHHHHHHHHHTTCCEE
T ss_pred ECCCCCEEeeeEeeccHHHHHHHHHHHHhCccccccCCcccCCceEEEEEcCCcch-HHHHHHHHHHHHHHHHhCCEEEE
Confidence 99999888999999999999999999999999999999999999999999975432 13488999999999999999999
Q ss_pred EeCC-CCCCHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEcCCCCccccccccccChHHHHHHHHHHHHHHHHHHHHH
Q 047998 399 LDDS-DQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLDEIQSALLER 477 (558)
Q Consensus 399 vD~r-~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~ll~~~~~~L~~r 477 (558)
+|++ + .++|+||++|+++|+||+|+||++|+++|+|+|++|+ ++|. .|++++|++.|++++++||++||+|
T Consensus 324 ~D~~~~-~s~g~k~~~a~~~G~p~~iiiG~~el~~~~V~vr~r~-~eq~------~v~~~el~~~l~~~l~~~~~~l~~~ 395 (477)
T 1hc7_A 324 LDDRDQ-HTPGYKFHEWELKGVPFRVELGPKDLEGGQAVLASRL-GGKE------TLPLAALPEALPGKLDAFHEELYRR 395 (477)
T ss_dssp ECCCSS-SCHHHHHHHHHHTTCSEEEEECHHHHHTTEEEEEETT-SCCC------EEEGGGHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCC-CCHHHHHHHHhhcCCCEEEEECcchhcCCEEEEEEec-CceE------EEeHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 7 5999999999999999999999999999999999999 8886 7999999999999999999999999
Q ss_pred HHHHhhcCeeecccHHHHHHHHhCCCEEEeeCCCChhhHHHHHHHhCCcccccccCCCCCCccccccCCCcce--EEEEe
Q 047998 478 ATSFRDSNIVDVSSYEELKEAISMGKWARGPWSASDADELKVKEETGATIRCFPFEQPQGNKTCFMTGNPAQE--VALFA 555 (558)
Q Consensus 478 A~~~~~~~i~~v~~~ee~k~al~~~~~v~apwc~~~~ce~~ik~~~~a~~~cip~~~~~~~~~C~~~g~~a~~--~~~~~ 555 (558)
|++++++||+.+++|+||+++++ +|||++||||+.+||++||++||||+|||||+++...++|++||+||++ |++||
T Consensus 396 a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~c~~~~~~~~~~~~~~~~ 474 (477)
T 1hc7_A 396 ALAFREDHTRKVDTYEAFKEAVQ-EGFALAFHCGDKACERLIQEETTATTRCVPFEAEPEEGFCVRCGRPSAYGKRVVFA 474 (477)
T ss_dssp HHHHHHHTEEECSSHHHHHHHTT-TSEEEECCCCCHHHHHHHHHHHCCEEEEEESSSCCCCCBCTTTCCBCCTTSCEEEE
T ss_pred HHHHHHhCEEECCCHHHHHHHHh-CCEEEEecCCCHHHHHHHHHHhCCceeecccccccCCCCCCCCCCcccceeEEEEE
Confidence 99999999999999999999999 8999999999999999999999999999999998655789999999999 99999
Q ss_pred ecC
Q 047998 556 KSY 558 (558)
Q Consensus 556 rsY 558 (558)
|||
T Consensus 475 ~~y 477 (477)
T 1hc7_A 475 KAY 477 (477)
T ss_dssp CBC
T ss_pred eeC
Confidence 999
No 4
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=100.00 E-value=5.4e-104 Score=864.80 Aligned_cols=461 Identities=36% Similarity=0.613 Sum_probs=435.2
Q ss_pred CCcchHHHHHHHHHhcccccc-CCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccC
Q 047998 84 RSQDFNAWYLDVISNAELADY-GPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFS 162 (558)
Q Consensus 84 ~~~~~~~wy~~~~~~a~l~d~-~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~ 162 (558)
+.+||++||.+++++++++|+ ++++|+++|+|.|+++|++|++++++.+++ ||++|+||+|++.++|.+++||+++|.
T Consensus 36 ~~~~f~~~~~~l~~~~glid~~~~~~G~~~~~P~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~ 114 (501)
T 1nj1_A 36 KMTEFSEWFHNILEEAEIIDQRYPVKGMHVWMPHGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFE 114 (501)
T ss_dssp ---CHHHHHHHHHHHTTCEECCCSSTTCCEECHHHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTT
T ss_pred CCCCccHhHHHHHHHCCCccccCCCCceEEECccHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCC
Confidence 345899999999999999998 789999999999999999999999999999 999999999999999988899999999
Q ss_pred CceEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC-CCCccccceEE-EecceeeeC
Q 047998 163 PELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEFL-WQEGHTAHA 240 (558)
Q Consensus 163 ~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~-~rGllR~REF~-q~d~h~~~~ 240 (558)
+|||+|+++|+.+++++++||||+|++++++|+++++||++||+|+||||+|||||++ |+||+|+|||+ |+|+|++|+
T Consensus 115 ~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~~~~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~ 194 (501)
T 1nj1_A 115 DEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHA 194 (501)
T ss_dssp TTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEES
T ss_pred cceEEEecCCCcccCCeeEEccCCCHHHHHHHHhhhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEEC
Confidence 9999999987555567899999999999999999999999999999999999999999 99999999999 999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhCCceEEeecCCchhhccCCCcceEEEEEEcCccceeecceEecCcccccccCeEEeC
Q 047998 241 TPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGDKRALQAGTSHNLGQNFSLAFGTQFTD 320 (558)
Q Consensus 241 ~~~~a~~e~~~il~~y~~l~~~~l~ipv~~g~k~~~ekf~Ga~~~~~ie~~~~dgr~lq~gti~~Lg~~~s~~f~i~y~d 320 (558)
+++++++|+..|+++|.+++.. |++|+..+.++..+++.|+..+|++|++++||+.+|+||+|++|++++++||++|.+
T Consensus 195 ~~e~a~~e~~~~l~~~~~i~~~-Lgl~~~~~~~~~~e~~~~a~~~~die~~l~~g~~~ei~t~~~lg~~~a~~~~~ry~~ 273 (501)
T 1nj1_A 195 TASEAEEQVERAVEIYKEFFNS-LGIPYLITRRPPWDKFPGSEYTVAFDTLMPDGKTLQIGTVHNLGQTFARTFEIKFET 273 (501)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH-HTCCCEEEECCTTTSCTTCSEEEEEEEECTTSCEEEEEEEEEEETHHHHHHTCEEEC
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCchhhcCCcccceEEEEEcCCCCEEEEEEEEeccccchhhcCeEEEC
Confidence 9999999999999999999865 899998888888899999999999999999999999999999999999999999999
Q ss_pred CCCceeeEeeeccchHHHHHHHHHHHhCCCCCCCCCCCCCCCcEEEEeC-CCCcchhHHHHHHHHHHHHHHhhCCcEEEE
Q 047998 321 ENGQRQHVWQTSWAISTRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPI-WKKADEKTGVLSAALSAKEVLQKSGIRVKL 399 (558)
Q Consensus 321 ~~g~~~~v~~~s~Gi~eRli~~lie~~~D~~Gl~lP~~lAP~qV~Iipi-~~~~~~~~~~~~~a~~I~~~Lr~~Girv~v 399 (558)
.+|+.+++|++|||+.+|+|++|+|+|+|++|++||++++|+||+|+|+ ..+++ +++.++|.+|++.|+++|++|++
T Consensus 274 ~~g~~~~~h~~g~GigeRli~aliE~~~d~~Gl~~P~~laP~qV~Iipi~~~~~~--~~~~~~a~~l~~~Lr~~Gi~v~~ 351 (501)
T 1nj1_A 274 PEGDHEYVHQTCYGLSDRVIASVIAIHGDESGLCLPPDVAAHQVVIVPIIFKKAA--EEVMEACRELRSRLEAAGFRVHL 351 (501)
T ss_dssp TTSCEEECEEEEEEECTHHHHHHHHHTCCSSSEECCTTTSSCSEEEEECCSSSSH--HHHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCCCEEeeeeccccHHHHHHHHHHHHcCcccCccCCccccCceEEEEEeccCCch--HHHHHHHHHHHHHHHhCCCEEEE
Confidence 9898889999999988999999999999999999999999999999999 53210 24789999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEcCCCCccccccccccChHHHHHHHHHHHHHHHHHHHHHHH
Q 047998 400 DDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLDEIQSALLERAT 479 (558)
Q Consensus 400 D~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~ll~~~~~~L~~rA~ 479 (558)
|+++ .++|+||++|+++|+||+|+||++|+++|+|+|++|++++|. .|++++|++.|++++++||++||++|+
T Consensus 352 D~~~-~s~g~k~~~a~~~G~p~~iiiG~~e~~~~~V~vr~r~t~eq~------~v~~~el~~~l~~~l~~~~~~l~~~a~ 424 (501)
T 1nj1_A 352 DDRD-IRAGRKYYEWEMRGVPLRVEIGPRDLEKGAAVISRRDTGEKV------TADLQGIEETLRELMKDILENLRTRAW 424 (501)
T ss_dssp CCCS-SCHHHHHHHHHHEECSEEEEECHHHHTTTEEEEEESSSCCEE------EEETTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCC-CCHHHHHHHHHhcCCCEEEEECcchhhCCEEEEEECCCCceE------EEeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 599999999999999999999999999999999999999887 789999999999999999999999999
Q ss_pred HHhhcCeeecccHHHHHHHHhC-CCEEEeeCCCChhhHHHHHHHhCCcccccccCCCCCCccccccCCCcceEEEEeecC
Q 047998 480 SFRDSNIVDVSSYEELKEAISM-GKWARGPWSASDADELKVKEETGATIRCFPFEQPQGNKTCFMTGNPAQEVALFAKSY 558 (558)
Q Consensus 480 ~~~~~~i~~v~~~ee~k~al~~-~~~v~apwc~~~~ce~~ik~~~~a~~~cip~~~~~~~~~C~~~g~~a~~~~~~~rsY 558 (558)
++++++|+.+++|+||++++++ +|||++||||+.+||++||++||||+|||| + +. .++|++||+||++|++|||||
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~-~~-~~~c~~~~~~~~~~~~~~~~y 501 (501)
T 1nj1_A 425 ERMESEIREAETLEEASRIVDEKRGIISFMWCGEEECGMDVEEKVRVDILGIQ-E-EG-SGTCINCGREAPYRAYLARTY 501 (501)
T ss_dssp HHHHTTEEECSSHHHHHHHHHHHCSEEEEEECCCHHHHHHHHHHHTCEEEEEE-E-CS-CCBCTTTCSBCCEEEEEECBC
T ss_pred HHHHhCEEEcCCHHHHHHHHhhCCCEEEEecCCCHHHHHHHHHHhCCceeccC-C-CC-CCcCcCcCCchheEEEEEeeC
Confidence 9999999999999999999986 799999999999999999999999999999 4 43 568999999999999999999
No 5
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=100.00 E-value=9.7e-102 Score=839.46 Aligned_cols=451 Identities=36% Similarity=0.617 Sum_probs=428.4
Q ss_pred CCCcchHHHHHHHHHhcccccc-CCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCcccc
Q 047998 83 PRSQDFNAWYLDVISNAELADY-GPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGF 161 (558)
Q Consensus 83 ~~~~~~~~wy~~~~~~a~l~d~-~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f 161 (558)
++++||++||.+++.++||+|+ ++++|+++|+|.|+.+|++|++++++.++++||++|.||+|++.++|.+++||+++|
T Consensus 2 ~~~~~~~~~~~~l~~~~~li~~~~~~~G~~d~lP~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~ 81 (459)
T 1nj8_A 2 SHMLEFSEWYSDILEKAEIYDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGF 81 (459)
T ss_dssp --CCCHHHHHHHHHHHTSSCBCCSTTSSCCBBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGG
T ss_pred CcccCccHhHHHHHHhCCCccccCCCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCccccc
Confidence 4678999999999999999999 789999999999999999999999999999999999999999999998899999999
Q ss_pred CCceEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC-CCCccccceEE-Eecceeee
Q 047998 162 SPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEFL-WQEGHTAH 239 (558)
Q Consensus 162 ~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~-~rGllR~REF~-q~d~h~~~ 239 (558)
.+|||+|+|+|+.++++.++||||+|++++++|+++++||++||+|+||||+|||||++ |+||+|+|||+ |+|+|+||
T Consensus 82 ~~emy~~~d~g~~~~~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~ 161 (459)
T 1nj8_A 82 EDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAH 161 (459)
T ss_dssp GGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEE
T ss_pred chhhEEEeccCcccCCCeeEECCCCcHHHHHHHHHhhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEE
Confidence 99999999988655567999999999999999999999999999999999999999999 99999999999 99999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhhCCceEEeecCCchhhccCCCcceEEEEEEcCccceeecceEecCcccccccCeEEe
Q 047998 240 ATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGDKRALQAGTSHNLGQNFSLAFGTQFT 319 (558)
Q Consensus 240 ~~~~~a~~e~~~il~~y~~l~~~~l~ipv~~g~k~~~ekf~Ga~~~~~ie~~~~dgr~lq~gti~~Lg~~~s~~f~i~y~ 319 (558)
++++++++|+..++++|.+++.. |++|+..+.+++.++|.|+..+|++|++++||+++|+||+|+||+++|++||++|.
T Consensus 162 ~~~~~a~~e~~~~i~~~~~~~~~-LGl~~~~~~~~~~ek~~ga~~~~~ie~~~~dg~~~e~gt~~~lg~~~s~~~~~~Y~ 240 (459)
T 1nj8_A 162 STKEEAENQVKEAISIYKKFFDT-LGIPYLISKRPEWDKFPGAEYTMAFDTIFPDGRTMQIATVHNLGQNFSKTFEIIFE 240 (459)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHH-HTCCCEEEEECTTSCCTTCSEEEEEEEECTTSCEEEEEEEEEEETHHHHHTTCEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-CCCceEEeecCchhhcCCcccceeEEEEcCCCcEEEEEEEeecccccccccCeEEE
Confidence 99999999999999999999865 89998888888889999999999999999999999999999999999999999999
Q ss_pred CCCCceeeEeeeccchHHHHHHHHHHHhCCCCCCCCCCCCCCCcEEEEeC-CCCcchhHHHHHHHHHHHHHHhhCCcEEE
Q 047998 320 DENGQRQHVWQTSWAISTRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPI-WKKADEKTGVLSAALSAKEVLQKSGIRVK 398 (558)
Q Consensus 320 d~~g~~~~v~~~s~Gi~eRli~~lie~~~D~~Gl~lP~~lAP~qV~Iipi-~~~~~~~~~~~~~a~~I~~~Lr~~Girv~ 398 (558)
+.+|+..++|++|||+.+|+|++|+|+|+|++|++||+++||+||+|+|+ +.+++ +++.++|.+|++.|+++ ++|+
T Consensus 241 ~~~G~~~~v~~~~~GigeRli~alie~~~d~~gl~~P~~laP~qv~Iipi~~~~~~--~~~~~~a~~l~~~Lr~~-i~v~ 317 (459)
T 1nj8_A 241 TPTGDKDYAYQTCYGISDRVIASIIAIHGDEKGLILPPIVAPIQVVIVPLIFKGKE--DIVMEKAKEIYEKLKGK-FRVH 317 (459)
T ss_dssp CTTSSEEECEEEEEEECTHHHHHHHHHHCBTTBCCCCTTSCSSSEEEEECCCSSCH--HHHHHHHHHHHHHHHTT-SCEE
T ss_pred CCCCCEeeeeEeeccHHHHHHHHHHHHhCCCceeEcCCcCCCCcEEEEecccCCcH--HHHHHHHHHHHHHHhhh-cEEE
Confidence 99998888999999988999999999999999999999999999999999 53210 24889999999999999 9999
Q ss_pred EeCCCCCCHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEcCCCCccccccccccChHHHHHHHHHHHHHHHHHHHHHH
Q 047998 399 LDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLDEIQSALLERA 478 (558)
Q Consensus 399 vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~ll~~~~~~L~~rA 478 (558)
+|+++ .++|+||++|+++|+||+|+||++|+++|+|+|++|++++|. .|++++|++.|++++++||++||+||
T Consensus 318 ~D~~~-~~~g~k~~~a~~~G~p~~iiiG~~el~~~~V~vr~r~t~eq~------~v~~~el~~~l~~~l~~~~~~~~~~a 390 (459)
T 1nj8_A 318 IDDRD-IRPGRKFNDWEIKGVPLRIEVGPKDIENKKITLFRRDTMEKF------QVDETQLMEVVEKTLNNIMENIKNRA 390 (459)
T ss_dssp ECCSC-SCHHHHHHHHHHTTCSEEEEECHHHHHTTEEEEEETTTCCEE------EEETTSHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCC-CCHHHHHHHHHHcCCCEEEEECcchhcCCEEEEEECCCCceE------EEeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 599999999999999999999999999999999999999887 78999999999999999999999999
Q ss_pred HHHhhcCeeecccH--HHHHHHHhC-CCEEEeeCCCChhhHHHHHHHhCCcccccccCCCCCCccccccCCCcceEEEEe
Q 047998 479 TSFRDSNIVDVSSY--EELKEAISM-GKWARGPWSASDADELKVKEETGATIRCFPFEQPQGNKTCFMTGNPAQEVALFA 555 (558)
Q Consensus 479 ~~~~~~~i~~v~~~--ee~k~al~~-~~~v~apwc~~~~ce~~ik~~~~a~~~cip~~~~~~~~~C~~~g~~a~~~~~~~ 555 (558)
++++++||+.+++| +||++++++ +|||++|| |+.+||++||++||||+|||| + +||++|++||
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~------------~~~~~~~~~~ 456 (459)
T 1nj8_A 391 WEKFENFITILEDINPDEIKNILSEKRGVILVPF-KEEIYNEELEEKVEATILGET-E------------YKGNKYIAIA 456 (459)
T ss_dssp HHHHHHHEEECSSCCHHHHHHHTTTTCSEEEEEC-CGGGCSHHHHHHHSSCEEEEE-E------------CSSSEEEEEE
T ss_pred HHHHHhCEEEcccCCHHHHHHHHhhCCCEEEEec-CCHHHHHHHHHHhCCeeccCc-C------------CcccEEEEEE
Confidence 99999999999999 999999987 78999999 999999999999999999999 2 8999999999
Q ss_pred ecC
Q 047998 556 KSY 558 (558)
Q Consensus 556 rsY 558 (558)
|||
T Consensus 457 ~~y 459 (459)
T 1nj8_A 457 KTY 459 (459)
T ss_dssp CBC
T ss_pred eeC
Confidence 999
No 6
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=100.00 E-value=7.9e-70 Score=588.80 Aligned_cols=363 Identities=18% Similarity=0.263 Sum_probs=321.9
Q ss_pred HHHHHHHHHhccccccCC-CCcceEeCchhHHHHHHHHHHHHHHH-HHcCCeeeecCccccHhhHhhhhcCccccCCceE
Q 047998 89 NAWYLDVISNAELADYGP-VRGTMVIRPYGYAIWEAIQDYLNVKF-KETGHSNMYFPQFIPYSFIEKEASHVEGFSPELA 166 (558)
Q Consensus 89 ~~wy~~~~~~a~l~d~~~-vkG~~~~lP~g~~i~~~I~~~i~~~~-~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy 166 (558)
.++|.++.++.+|+++.. ++|+++|+|.|+.+|++|++++++.+ +++||++|.||+|++.++|. .+||+++|.++||
T Consensus 34 ~rdH~~lg~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~-~sGh~~~~~~emy 112 (460)
T 3uh0_A 34 ATMTSMVSQRQDLFMTDPLSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWE-KSGHWENYADDMF 112 (460)
T ss_dssp HHHHHHHHHHHTCEECCTTSTTCCEECHHHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHH-HHTCTTTSGGGSC
T ss_pred CCCHHHHHHhCCCceeccCCCCcEEECccHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHH-hcCCccccccceE
Confidence 588999999999999764 79999999999999999999999999 99999999999999999996 5899999999999
Q ss_pred EEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCC--CCccccceEEEecceeeeCChHH
Q 047998 167 LVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRT--KPFVRTLEFLWQEGHTAHATPEE 244 (558)
Q Consensus 167 ~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~--rGllR~REF~q~d~h~~~~~~~~ 244 (558)
+|++.+.. ++.++||||+|++++.+|+++++||++||+|+||||+|||||.++ +||+|+|||+|+|+|+| +++++
T Consensus 113 ~~~d~~~~--~~~l~LrPt~~~~~~~~~~~~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~f-~~~e~ 189 (460)
T 3uh0_A 113 KVETTDEE--KEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIF-CTPSQ 189 (460)
T ss_dssp EECC--------CEEECSCSHHHHHHHHTTSCCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEEE-ECGGG
T ss_pred EEecCCCC--CceEEEcccCcHHHHHHHHhccccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEEE-cCHHH
Confidence 99986411 258999999999999999999999999999999999999999994 89999999999999998 77889
Q ss_pred HHHHHHHHHHHHHHHHHhhCCce---------EEeecCCchhhccCCCcc------------------------------
Q 047998 245 AEKEAMQMIDIYTKFAYEHTAIP---------VIAGRKSKVETFAGASRT------------------------------ 285 (558)
Q Consensus 245 a~~e~~~il~~y~~l~~~~l~ip---------v~~g~k~~~ekf~Ga~~~------------------------------ 285 (558)
+++|+..+++++..++.+.|++| +....+++.++|.|+..+
T Consensus 190 ~~~e~~~~i~~~~~~~~~~lGl~~~~~~~~~~~~~~l~t~pe~~~G~~~~w~~ae~~L~~~l~~~g~~~~~~~g~gafyg 269 (460)
T 3uh0_A 190 VKSEIFNSLKLIDIVYNKIFPFVKGGSGAESNYFINFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPGDGAFYG 269 (460)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCCC-----CCSSCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHHHTCCEEEETTCSCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcccccccceEEEEccCCcccCCCHHHHHHHHHHHHHHHHHhCCCeeECCCcccccc
Confidence 99999999999999984457887 222223445666665433
Q ss_pred eEEEEEEc--CccceeecceEecCcccccccCeEEeCCCCcee---eEeeeccchHHHHHHHHHHHhCCCCCCCCCCCCC
Q 047998 286 YTIEAMMG--DKRALQAGTSHNLGQNFSLAFGTQFTDENGQRQ---HVWQTSWAISTRFVGGIIMTHGDDTGLMLPPRIA 360 (558)
Q Consensus 286 ~~ie~~~~--dgr~lq~gti~~Lg~~~s~~f~i~y~d~~g~~~---~v~~~s~Gi~eRli~~lie~~~D~~Gl~lP~~lA 360 (558)
..+|+.+. +||.+|+||++ ||++++++|+++|.+++|+.. .+|++|||.+||+|++|+|++ |++||+|+|
T Consensus 270 pkid~~~~d~~gr~~q~~Tiq-ld~~~~~rf~l~y~~~~g~~~~P~~ih~~~~Gg~eRli~~Lie~~----~g~~P~~la 344 (460)
T 3uh0_A 270 PKLDIMVTDHLRKTHQVATIQ-LDFQLPERFDLKFKDQDNSYKRPIMIHRATFGSIERFMALLIDSN----EGRWPFWLN 344 (460)
T ss_dssp CEEEEEEECTTSCEEEEEEEE-EESHHHHHTTCCEECTTSCEECCEEEEEEEEEEHHHHHHHHHHHH----TTCCCGGGC
T ss_pred ceEEEEEEccCCCeeeecccc-cccccccccceEEECCCCCccCcEEEecCcchHHHHHHHHHHHHc----CCCCCCCCC
Confidence 25787774 48999999996 999999999999999999876 688999999999999999988 469999999
Q ss_pred CCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhC--------------CcEEEEeCCCCCCHHHHHHHHHHcCCCEEEEeC
Q 047998 361 PIQVVIVPIWKKADEKTGVLSAALSAKEVLQKS--------------GIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIG 426 (558)
Q Consensus 361 P~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~--------------Girv~vD~r~~~slgkk~~~ae~~GiP~~IiIG 426 (558)
|+||+|||+++++ +++.++|.+|++.|+++ ||+|++|+++ .++|+||++|+++|+||+|+||
T Consensus 345 P~qv~Vipi~~~~---~~~~~~a~~l~~~Lr~~~~~~~~~~~~~~~~Gi~v~~D~~~-~~lg~k~r~Ad~~g~p~~ivvG 420 (460)
T 3uh0_A 345 PYQAVIIPVNTKN---VQQLDMCTALQKKLRNELEADDMEPVPLNDWHFNVDLDIRN-EPVGYRIKSAILKNYSYLIIVG 420 (460)
T ss_dssp SCCEEEEESSTTC---HHHHHHHHHHHHHHHCCCCTTSSCCCCTTCCCCCEEECCCS-SCHHHHHHHHHHHTCSEEEEEC
T ss_pred CceEEEEEecCCc---HHHHHHHHHHHHHHHcCcccccccccccCCCCEEEEEECCC-CCHHHHHHHHHHcCCCEEEEEc
Confidence 9999999998753 34789999999999998 9999999998 5999999999999999999999
Q ss_pred ceecCCCeEEEEEcCCCC-ccccccccccChHHHHHHHHHHHHHH
Q 047998 427 PRDVSSGSVVISRRDVPG-KQGKVFGISMEPSILEAYVKDKLDEI 470 (558)
Q Consensus 427 ~kEl~~~~V~Ik~rdt~e-k~~~~~~v~v~~~el~~~i~~ll~~~ 470 (558)
++|+++|+|+||+|++++ |. .++++++++.|+++++++
T Consensus 421 ~~E~~~g~Vtvr~r~~~e~q~------~v~~~el~~~l~~~~~~~ 459 (460)
T 3uh0_A 421 DEEVQLQKYNIRERDNRKSFE------KLTMSQIWEKFIELEKNY 459 (460)
T ss_dssp HHHHHHTCEEEEEGGGTTSCE------EECHHHHHHHHHHHHHTT
T ss_pred chhhhCCeEEEEECCCCceeE------EeeHHHHHHHHHHHHHhc
Confidence 999999999999999998 76 799999999999888753
No 7
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=100.00 E-value=1.5e-63 Score=560.12 Aligned_cols=366 Identities=22% Similarity=0.317 Sum_probs=313.2
Q ss_pred ceeecCCCC-cchHHHHHHHHHh------------ccccccC-CCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeec
Q 047998 77 RERVITPRS-QDFNAWYLDVISN------------AELADYG-PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYF 142 (558)
Q Consensus 77 ~~~~i~~~~-~~~~~wy~~~~~~------------a~l~d~~-~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~t 142 (558)
+++|+++++ ++|.+ |.+.+++ .+++++. .++|+++|+|.|+.+|++|++++++.+.++||++|.|
T Consensus 217 r~~g~~~~~~~~l~~-~~~~~eea~~rdH~~lg~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~r~~~~~~Gy~ev~t 295 (642)
T 1qf6_A 217 RIYGTAWADKKALNA-YLQRLEEAAKRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKG 295 (642)
T ss_dssp EEEEEECSSHHHHHH-HHHHHHHHHTTCHHHHHHHTTCEECCTTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECCC
T ss_pred eeeccccCchhHHhh-hhhhhhccccCCHHHHHHhcCccccccCCCCcEEECCcHHHHHHHHHHHHHHHHHHcCCEEEEC
Confidence 678998776 44544 4444444 4455443 3799999999999999999999999999999999999
Q ss_pred CccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC--
Q 047998 143 PQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-- 220 (558)
Q Consensus 143 P~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~-- 220 (558)
|+|++.++|.+ +|||+.|.++||. ++.++ +.++||||+|++++.+|+++++||++||+|+||+|+|||||.+
T Consensus 296 P~l~~~~l~~~-sGh~~~~~~~my~-~d~~~----~~~~LrP~~~~~~~~~~~~~~~syr~LPlr~~~~g~~fR~E~~g~ 369 (642)
T 1qf6_A 296 PFMMDRVLWEK-TGHWDNYKDAMFT-TSSEN----REYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGS 369 (642)
T ss_dssp CSEEETHHHHH-HSHHHHHGGGCEE-EEETT----EEEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCGGG
T ss_pred CcCccHHHHhh-cCcccccccccee-eecCC----ceEEecCCCCHHHHHHHHhhhhhccccCeEEEEeccEEecCCCcc
Confidence 99999999965 8999999999999 88776 4899999999999999999999999999999999999999999
Q ss_pred CCCccccceEEEecceeeeCChHHHHHHHHHHHHHHHHHHHhhCCc-eEEeecCCchhhccC------------------
Q 047998 221 TKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAI-PVIAGRKSKVETFAG------------------ 281 (558)
Q Consensus 221 ~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il~~y~~l~~~~l~i-pv~~g~k~~~ekf~G------------------ 281 (558)
++||+|+|||+|+|+|+|+ +++++++|+..+++++.+++.. |++ ++.....+..+++.|
T Consensus 370 ~~GL~R~ReF~q~d~~~f~-~~~~~~~e~~~~i~~~~~i~~~-lGl~~~~v~l~~~~e~~~g~~e~w~~a~~~l~~~l~~ 447 (642)
T 1qf6_A 370 LHGLMRVRGFTQDDAHIFC-TEEQIRDEVNGCIRLVYDMYST-FGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEE 447 (642)
T ss_dssp CBTTTBCSEEEEEEEEEEE-CGGGHHHHHHHHHHHHHHHHGG-GTCCCCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHT
T ss_pred ccCCceeeeEEEccEEEEc-CHHHHHHHHHHHHHHHHHHHHH-cCCCceEEEEecCcccccCCHHHHHHHHHHHHHHHHH
Confidence 7799999999999999984 7889999999999999988876 677 543222221122222
Q ss_pred ------------CCcceEEEEEEcC--ccceeecceEecCcccccccCeEEeCCCCcee---eEeeeccchHHHHHHHHH
Q 047998 282 ------------ASRTYTIEAMMGD--KRALQAGTSHNLGQNFSLAFGTQFTDENGQRQ---HVWQTSWAISTRFVGGII 344 (558)
Q Consensus 282 ------------a~~~~~ie~~~~d--gr~lq~gti~~Lg~~~s~~f~i~y~d~~g~~~---~v~~~s~Gi~eRli~~li 344 (558)
+.+.-.+|+.+.| |+.+++||+| ++++++++||++|.+.+|++. .+|++++|.++|+|++|+
T Consensus 448 ~g~~~~~~~g~~afygpk~d~~~~d~~G~~~~~gti~-~df~l~~r~~~~y~~~~g~~~~P~~~hrai~G~ieR~i~~li 526 (642)
T 1qf6_A 448 NNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQ-LDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILT 526 (642)
T ss_dssp TTCCCEEETTCSCTTCCEEEEEEECTTCCEEEEEEEE-EESSHHHHTTCCEECTTSCEECCEEEEEEEEEEHHHHHHHHH
T ss_pred cCCCcEEcCCCcccccCcccEEEEccCCceEEeeeEE-EeccCCccCCCEEEecCCCCcCcEEEEeccCCCHHHHHHHHH
Confidence 2223346776767 8889999998 888889999999999988654 367788988999999999
Q ss_pred HHhCCCCCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEEEE
Q 047998 345 MTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIE 424 (558)
Q Consensus 345 e~~~D~~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~~Ii 424 (558)
|+|++ .||+|+||+||+|+|+++ +..++|.+|++.|+++||+|++|+++ .++|+||++|++.|+||+|+
T Consensus 527 E~~~~----~~P~~laP~qv~vipi~~------~~~~~a~~v~~~L~~~Gi~v~~D~~~-~~~g~kir~a~~~g~p~~iv 595 (642)
T 1qf6_A 527 EEFAG----FFPTWLAPVQVVIMNITD------SQSEYVNELTQKLSNAGIRVKADLRN-EKIGFKIREHTLRRVPYMLV 595 (642)
T ss_dssp HHHTT----CCCTTTCSSCEEEEESSH------HHHHHHHHHHHHHHTTTCCEEEECCS-SCHHHHHHHHHHTTCSEEEE
T ss_pred HHhcC----CCCcccCCceEEEEEeCH------HHHHHHHHHHHHHHhCCCEEEEECCC-CCHHHHHHHHHHcCCCEEEE
Confidence 99853 899999999999999973 37899999999999999999999998 59999999999999999999
Q ss_pred eCceecCCCeEEEEEcCCCCccccccccccChHHHHHHHHHHHHH
Q 047998 425 IGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLDE 469 (558)
Q Consensus 425 IG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~ll~~ 469 (558)
||++|+++|+|+||+|+++++. .++++++++.|+++++.
T Consensus 596 vG~~E~~~~~V~vr~r~~~~~~------~v~~~e~~~~l~~~~~~ 634 (642)
T 1qf6_A 596 CGDKEVESGKVAVRTRRGKDLG------SMDVNEVIEKLQQEIRS 634 (642)
T ss_dssp ECTTTGGGCCEEEEESSSCEEE------EECHHHHHHHHHHHHHT
T ss_pred ECchhhhcCeEEEEECCCCceE------EEEHHHHHHHHHHHHhh
Confidence 9999999999999999998876 79999999888776653
No 8
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=100.00 E-value=3.8e-62 Score=529.88 Aligned_cols=359 Identities=21% Similarity=0.337 Sum_probs=307.7
Q ss_pred hHHHHHHHHHhccccccCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEE
Q 047998 88 FNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELAL 167 (558)
Q Consensus 88 ~~~wy~~~~~~a~l~d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~ 167 (558)
.....++++.+++++.. .++|+++|+|.|+++|++|+++++++|.++||++|.||+|++.++| +.+|||+.|.++||+
T Consensus 38 a~~~~h~ll~r~g~i~~-~~~G~~d~lP~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~-~~sg~~d~~~~em~~ 115 (458)
T 2i4l_A 38 AEIVSHRLMLRAGMLRQ-EAAGIYAWLPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLW-RESGRYDAYGPEMLR 115 (458)
T ss_dssp CCSHHHHHHHHTTCEEE-EETTEEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHH-HHHTHHHHSCTTSEE
T ss_pred cCcchHHHHhhcCCeec-cCCcceEECCCHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHH-HhcCCccccccceEE
Confidence 33456777788888864 5799999999999999999999999999999999999999999999 557999999999999
Q ss_pred EEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecC-CCCCCccccceEEEecceeeeCChHHHH
Q 047998 168 VTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWE-MRTKPFVRTLEFLWQEGHTAHATPEEAE 246 (558)
Q Consensus 168 ~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E-~~~rGllR~REF~q~d~h~~~~~~~~a~ 246 (558)
|+|++|+ .++||||+|..++.+++.++.||++||+|+||+|+|||+| ++++||+|+|||+|+|+|+||.+.++++
T Consensus 116 ~~d~~~~----~~~LrPt~ee~t~~i~r~~~~s~~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~~ad 191 (458)
T 2i4l_A 116 IADRHKR----ELLYGPTNEEMITEIFRAYIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGAR 191 (458)
T ss_dssp EECTTCC----EEEECSCCHHHHHHHHHHHCCBGGGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHHHH
T ss_pred EEeCCCC----eEEECCCChHHHHHHHHHHHhhccccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECCHHHHH
Confidence 9999874 8999999999999999999999999999999999999999 5567999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCceEEee--cC------Cchhh----ccCC-----------------Ccc------------
Q 047998 247 KEAMQMIDIYTKFAYEHTAIPVIAG--RK------SKVET----FAGA-----------------SRT------------ 285 (558)
Q Consensus 247 ~e~~~il~~y~~l~~~~l~ipv~~g--~k------~~~ek----f~Ga-----------------~~~------------ 285 (558)
+|+..|+++|.+++.. +++++... +. ...+. -.|. ...
T Consensus 192 ~e~~~~~~~~~~i~~~-lGl~~~~~~~~~g~~gg~~s~e~~~l~~~ged~i~~~~~~~~~n~~~~~~~~~~~l~~~l~~~ 270 (458)
T 2i4l_A 192 KSYNKMFVAYLRTFAR-MGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYIDRDVLNLPVPDENVDYDGDLTPIIKQW 270 (458)
T ss_dssp HHHHHHHHHHHHHHHT-TTCCEEEEECCCCSSCSSCEEEEEEECTTCSEEEEEEGGGGGCCCCCTTCCTTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-cCCceEEEEccccccCCccchhhhhhhhcCcceEEecccccccCHHHHhccccHhHHHHHhcC
Confidence 9999999999998765 67765321 11 00000 0010 000
Q ss_pred --e-EEE-----------EEE----cCccceeecceEecCcccccccCeEEeCCCCceeeEeeeccch-HHHHHHHHHHH
Q 047998 286 --Y-TIE-----------AMM----GDKRALQAGTSHNLGQNFSLAFGTQFTDENGQRQHVWQTSWAI-STRFVGGIIMT 346 (558)
Q Consensus 286 --~-~ie-----------~~~----~dgr~lq~gti~~Lg~~~s~~f~i~y~d~~g~~~~v~~~s~Gi-~eRli~~lie~ 346 (558)
+ .+. ... .-.|++++|++|++|++++.++|++|.+.+|+..+++++|||| ++|++++|+++
T Consensus 271 ~~~~~~~~~~~~g~~~~~~~~~~~l~~~rgl~~G~iFelg~~~s~~~g~ry~~~~G~~~p~~~~gfgiGveRli~al~e~ 350 (458)
T 2i4l_A 271 TSVYAATEDVHEPARYESEVPEANRLNTRGIEVGQIFYFGTKYSDSMKANVTGPDGTDAPIHGGSYGVGVSRLLGAIIEA 350 (458)
T ss_dssp HHSCEEETTTCCTTHHHHHSCTTTEEEEEEEEEEEEEEEETHHHHHTTCEEECTTSCEEECEEEEEEEEHHHHHHHHHHH
T ss_pred chhhhcChhhcccccccCCCCCcCceeeeeeccCcEEEecccccccCCcEEECCCCCEeceEEeeecccHHHHHHHHHHh
Confidence 0 000 000 0158899999999999999999999999999988888999999 99999999999
Q ss_pred hCCCCCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEEEEeC
Q 047998 347 HGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIG 426 (558)
Q Consensus 347 ~~D~~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~~IiIG 426 (558)
+.|++|+.||+++||+||+|+|++.++ ++..++|.+|++.|+++|++|++|+++ .++|+||++|+++|+|++|+||
T Consensus 351 ~~d~~g~~~p~~~ap~~v~vi~~~~~~---~~~~~~a~~l~~~Lr~~Gi~v~~D~~~-~~~g~k~~~ad~~g~p~~iivG 426 (458)
T 2i4l_A 351 CHDDNGIIWPEAVAPFRVTILNLKQGD---AATDAACDQLYRELSAKGVDVLYDDTD-QRAGAKFATADLIGIPWQIHVG 426 (458)
T ss_dssp SEETTEECCCTTTCSCSEEEEESSTTC---HHHHHHHHHHHHHHHHTTCCEEEECSS-CCHHHHHHHHHHHTCSEEEEEC
T ss_pred hccccCCcCCcccCCceEEEEecCCCC---HHHHHHHHHHHHHHhhCCCEEEEECCC-CCHHHHHHHHHhcCCCEEEEEC
Confidence 999999999999999999999996432 247899999999999999999999997 5999999999999999999999
Q ss_pred ceecCCCeEEEEEcCCCCccccccccccChHHHHHHH
Q 047998 427 PRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYV 463 (558)
Q Consensus 427 ~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i 463 (558)
++|+++|+|+||+|+++++. .|+++++++.|
T Consensus 427 ~~e~~~g~v~vr~r~~~~~~------~v~~~~l~~~l 457 (458)
T 2i4l_A 427 PRGLAEGKVELKRRSDGARE------NLALADVVARL 457 (458)
T ss_dssp HHHHTTTEEEEEETTTCCEE------EEETTTTTCC-
T ss_pred CchhhCCEEEEEECCCCcEE------EEeHHHHHHhh
Confidence 99999999999999999887 78888876544
No 9
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=100.00 E-value=1.1e-61 Score=518.09 Aligned_cols=352 Identities=21% Similarity=0.308 Sum_probs=305.8
Q ss_pred HHHHHHHhccccccCC-CCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEE
Q 047998 91 WYLDVISNAELADYGP-VRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVT 169 (558)
Q Consensus 91 wy~~~~~~a~l~d~~~-vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~ 169 (558)
+|.++.++.+|+++.. ++|+++|+|.|+.+|++|++++++.+.++||++|.||+|++.++|.+ +||++.|.++||. .
T Consensus 2 dh~~l~~~~~l~~~~~~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~-sG~~~~~~~em~~-~ 79 (401)
T 1evl_A 2 DHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEK-TGHWDNYKDAMFT-T 79 (401)
T ss_dssp CHHHHHHHTTCEECCTTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHH-HTHHHHSGGGCCE-E
T ss_pred ChHHHHHhCCceEecCCCCcceEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHh-cCcHhhhchhhEe-E
Confidence 4889999999987654 79999999999999999999999999999999999999999999966 8999999999999 8
Q ss_pred ecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC--CCCccccceEEEecceeeeCChHHHHH
Q 047998 170 IGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR--TKPFVRTLEFLWQEGHTAHATPEEAEK 247 (558)
Q Consensus 170 ~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~--~rGllR~REF~q~d~h~~~~~~~~a~~ 247 (558)
|++| +.++||||+|++++++|++++.||++||+|+||+|+|||+|.+ ++||+|+|||+|.|+|+|+ +++++++
T Consensus 80 d~~~----~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~f~-~~~~~~~ 154 (401)
T 1evl_A 80 SSEN----REYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEEQIRD 154 (401)
T ss_dssp EETT----EEEEECSCSHHHHHHHHTSSCCBGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEE-CGGGHHH
T ss_pred ecCC----ceEEEcCCCCHHHHHHHHhhhhhhhhCChhhccccceecCCCCcccccccccCcEEecceEEeC-CHHHHHH
Confidence 8776 4899999999999999999999999999999999999999997 6799999999999999985 6899999
Q ss_pred HHHHHHHHHHHHHHhhCCc-eEEeecCCchhhccCCCc------------------------------ceEEEEEEcC--
Q 047998 248 EAMQMIDIYTKFAYEHTAI-PVIAGRKSKVETFAGASR------------------------------TYTIEAMMGD-- 294 (558)
Q Consensus 248 e~~~il~~y~~l~~~~l~i-pv~~g~k~~~ekf~Ga~~------------------------------~~~ie~~~~d-- 294 (558)
|+..++++|.+++.. |++ ++.....+..+++.|... .-.+|..+.|
T Consensus 155 e~~e~i~~~~~~~~~-lgl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~g~~~~~~~~~~~~y~~~~d~~~~~~~ 233 (401)
T 1evl_A 155 EVNGCIRLVYDMYST-FGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCL 233 (401)
T ss_dssp HHHHHHHHHHHHHHT-TTCSCCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHHTTCCCEEETTCSBTTBCEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHH-cCCCceEEEEecCCcccCCCHHHHHHHHHHHHHHHHhcCCCceecCCCccccCCCcCeEEEecC
Confidence 999999999888875 677 543211111122222211 1136777777
Q ss_pred ccceeecceEecCcccccccCeEEeCCCCcee---eEeeeccchHHHHHHHHHHHhCCCCCCCCCCCCCCCcEEEEeCCC
Q 047998 295 KRALQAGTSHNLGQNFSLAFGTQFTDENGQRQ---HVWQTSWAISTRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWK 371 (558)
Q Consensus 295 gr~lq~gti~~Lg~~~s~~f~i~y~d~~g~~~---~v~~~s~Gi~eRli~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~ 371 (558)
|+.+++||+| ++.+++++||++|.+.+|+.. .+|++++|.++|++++|+++|++ .||++++|+||+|+|+++
T Consensus 234 G~~~~~gt~~-~d~~l~~~~~~~y~~~~g~~~~p~~~~~~~~GgieRli~~l~e~~~~----~~p~~~ap~~v~vi~~~~ 308 (401)
T 1evl_A 234 DRAWQCGTVQ-LDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAG----FFPTWLAPVQVVIMNITD 308 (401)
T ss_dssp CCEEEEEEEE-EESSHHHHTTCCEECTTSCEECCEEEEEEEEEEHHHHHHHHHHHHTT----CCCTTTCSSCEEEEESSG
T ss_pred CCeEEeeeee-eccccccccCCEEECCCCCCcCcEEEEecCCCcHHHHHHHHHHHhCC----cCCCCCCCeEEEEEecCH
Confidence 8888999998 666778999999999988754 24667787799999999998853 799999999999999974
Q ss_pred CcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEcCCCCccccccc
Q 047998 372 KADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFG 451 (558)
Q Consensus 372 ~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~ 451 (558)
+ ..++|.+|++.||++|++|++|+++ .++|+||++|++.|+||+|+||++|+++|+|+||+|++++|.
T Consensus 309 ~------~~~~a~~l~~~Lr~~Gi~v~~d~~~-~~~~~k~~~A~~~g~p~~iiiG~~e~~~~~v~vk~~~~~~q~----- 376 (401)
T 1evl_A 309 S------QSEYVNELTQKLSNAGIRVKADLRN-EKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLG----- 376 (401)
T ss_dssp G------GHHHHHHHHHHHHHTTCCEEEECCS-SCHHHHHHHHHHTTCSEEEEECHHHHHHTEEEEEETTSCEEE-----
T ss_pred H------HHHHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHhcCCCEEEEECcchhhCCeEEEEECCCCceE-----
Confidence 3 6789999999999999999999997 599999999999999999999999999999999999999887
Q ss_pred cccChHHHHHHHHHHHH
Q 047998 452 ISMEPSILEAYVKDKLD 468 (558)
Q Consensus 452 v~v~~~el~~~i~~ll~ 468 (558)
.++++++++.|+++++
T Consensus 377 -~v~~~el~~~l~~~~~ 392 (401)
T 1evl_A 377 -SMDVNEVIEKLQQEIR 392 (401)
T ss_dssp -EEEHHHHHHHHHHHHH
T ss_pred -EeeHHHHHHHHHHHHh
Confidence 7999999988876654
No 10
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=100.00 E-value=4.1e-61 Score=535.53 Aligned_cols=359 Identities=21% Similarity=0.343 Sum_probs=305.8
Q ss_pred HHHHHHHHhccccccCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEE
Q 047998 90 AWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVT 169 (558)
Q Consensus 90 ~wy~~~~~~a~l~d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~ 169 (558)
..|.. +.++++++. .++|+++|+|.|+++|++|++++++.++++||++|.||+|++.++|. .+||++.|.++||+|+
T Consensus 21 ~~h~~-l~~~g~~~~-~~~G~~~~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~-~sG~~~~~~~~m~~~~ 97 (572)
T 2j3l_A 21 LSHQI-LLRAGYIRQ-VAAGIYSYLPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWK-ESGRYETYGPNLYRLK 97 (572)
T ss_dssp HHHHH-HHHTTSEEE-EETTEEEECHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHH-HHSHHHHSCTTSCEEE
T ss_pred cCHHH-HHhCCCccc-cCCCeeeeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHH-hcCCccccchheEEEe
Confidence 44444 455688875 46999999999999999999999999999999999999999999994 6799999999999999
Q ss_pred ecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC-CCCccccceEEEecceeeeCChHHHHHH
Q 047998 170 IGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEFLWQEGHTAHATPEEAEKE 248 (558)
Q Consensus 170 ~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~-~rGllR~REF~q~d~h~~~~~~~~a~~e 248 (558)
|++|+ .++||||+|++++++|+++++||++||+|+||+|+|||||++ ++||+|+|||+|+|+|+||.+++++++|
T Consensus 98 d~~~~----~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~Gl~R~ReF~q~d~~~f~~~~~~~~~e 173 (572)
T 2j3l_A 98 DRNDR----DYILGPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADEASLDQS 173 (572)
T ss_dssp CTTCC----EEEECSCCHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCCTGGGSCSEEEEEEEEEEESSHHHHHHH
T ss_pred cCCCC----eEEEccccHHHHHHHHHhhccChhhcCHhhheecCeeccCcCcccCccccceeEEeeeEEEcCCHHHHHHH
Confidence 98874 899999999999999999999999999999999999999999 5799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCceEEeecCC----------------------------------------------------c-
Q 047998 249 AMQMIDIYTKFAYEHTAIPVIAGRKS----------------------------------------------------K- 275 (558)
Q Consensus 249 ~~~il~~y~~l~~~~l~ipv~~g~k~----------------------------------------------------~- 275 (558)
+..++++|.+++.. |++++.....+ +
T Consensus 174 ~~~~~~~~~~~~~~-lgl~~~~~~~~~g~~g~~~s~E~~~~~~~ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (572)
T 2j3l_A 174 YRDYEKAYSRIFER-CGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTICYSTESDYAANLEMATSLYTPKKSHETQLDL 252 (572)
T ss_dssp HHHHHHHHHHHHHH-TTCCEEEEECCGGGGTCSSEEEEEEECTTCSEEEEEESSSSCEEETTTCCCCCCCCCCCCCCCCC
T ss_pred HHHHHHHHHHHHHH-cCCcEEEEecccccCCCcccEEEEEEcCCCcceEEEeCCCCcccchhhhhccccccccccccccc
Confidence 99988888888765 56664321000 0
Q ss_pred ----------hh------------------------------------------hccCC---------------------
Q 047998 276 ----------VE------------------------------------------TFAGA--------------------- 282 (558)
Q Consensus 276 ----------~e------------------------------------------kf~Ga--------------------- 282 (558)
.+ ++.|+
T Consensus 253 ~~~~~~~~~ti~~l~~~lg~~~~~i~K~l~~~~~~~~~~vli~gd~el~~~kl~~~l~~~~l~~a~~~el~~~~g~~~g~ 332 (572)
T 2j3l_A 253 EKIATPEVGTIAEVANFFEVEPQRIIKSVLFIADEEPVMVLVRGDHDVNDVKLKNFLGADFLDEATEEDARRVLGAGFGS 332 (572)
T ss_dssp EEEECTTCCSHHHHHHHHTCCGGGBEEEEEEEETTEEEEEEEETTCCBCHHHHHHHHTCSCEEECCHHHHHHHHSSCTTS
T ss_pred ceecCCCCCcHHHHHHHhCcCHHHeEEEEEEEeCCcEEEEEeeCccccCHHHHHHhhCCCccccCCHHHHHHhhCCCccc
Confidence 00 00000
Q ss_pred --------CcceEEEE----------------------EE-----------------cC------c-----cceeecceE
Q 047998 283 --------SRTYTIEA----------------------MM-----------------GD------K-----RALQAGTSH 304 (558)
Q Consensus 283 --------~~~~~ie~----------------------~~-----------------~d------g-----r~lq~gti~ 304 (558)
...+.+|. .+ ++ | |++++||+|
T Consensus 333 ~~p~gl~~~i~~~iD~sl~r~~~~~~ga~~~~~~~~~~~~grd~~~~~~~el~~~~~G~~~~~~gg~~~~~~~ievg~~f 412 (572)
T 2j3l_A 333 IGPVNVSEDVKIYADLAVQDLANAIVGANEDGYHLTNVNPDRDFQPISYEDLRFVQEGDPSPDGNGVLAFTKGIEIGHIF 412 (572)
T ss_dssp CCSTTCCTTCEEEEETTTTTCCSEEEECSSTTEEEEEECBTTTBCCSEEECCBCCCTTCBCTTSSSBEEEEEEEEEEEEE
T ss_pred cCCccCCCCCcEEEehhhhcCCceEEccCCCCceeeccccccCcCcCcHHHHHHHhcCCcccccCCcceeccceEEEEEe
Confidence 00011110 00 00 1 678889999
Q ss_pred ecCcccccccCeEEeCCCCceeeEeeeccch-HHHHHHHHHHHhCCCCCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHH
Q 047998 305 NLGQNFSLAFGTQFTDENGQRQHVWQTSWAI-STRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAA 383 (558)
Q Consensus 305 ~Lg~~~s~~f~i~y~d~~g~~~~v~~~s~Gi-~eRli~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a 383 (558)
+||++|+++|+++|.+.+|+..+++++|||| ++|++++|+++++|++|+.||+|+||+||+|+|++.++ +...++|
T Consensus 413 ~Lg~~ys~~~~~~~~~~~g~~~~p~~g~~giGveRli~~l~e~~~d~~g~~~p~~~ap~~v~vi~~~~~~---~~~~~~a 489 (572)
T 2j3l_A 413 KLGTRYSDAMGATVLDENGREKSVIMGCYGIGVSRLLSAIVEQNADERGINWPTGIAPFDLHVVQMNVKD---EYQTKLS 489 (572)
T ss_dssp EEETHHHHHHTCEEECTTSCEEECEEEEEEEEHHHHHHHHHHHHEETTEECCCTTTSSCSEEEEESCTTC---HHHHHHH
T ss_pred ccCcccccccCCEEECCCCcEEeeeeeccccCHHHHHHHHHHhcCcccCcccCCCcCCeEEEEEecCCCC---HHHHHHH
Confidence 9999999999999999999877777889999 89999999999999999999999999999999997432 2478999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEcCCCCccccccccccChHHHHHHH
Q 047998 384 LSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYV 463 (558)
Q Consensus 384 ~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i 463 (558)
.+|++.||++|++|++|+++ .++|+||++|++.|+||+|+||++| ++|+|+||+|++++|. .++++++++.|
T Consensus 490 ~~l~~~Lr~~gi~v~~d~~~-~~~g~k~~~a~~~g~p~~iivG~~e-~~~~v~vk~~~~~~q~------~v~~~~l~~~l 561 (572)
T 2j3l_A 490 QEVEAMMTEAGYEVLVDDRN-ERAGVKFADADLIGCPIRITVGKKA-VDGVVEVKIKRTGEML------EVRKEELESTL 561 (572)
T ss_dssp HHHHHHHHHTTCCEEEECSS-CCHHHHHHHHHHHCCSEEEEECGGG-GGTEEEEEETTTCCEE------EEEHHHHHHHH
T ss_pred HHHHHHHHhCCCeEEEeCCC-CCHhHHHHHHHhcCCCEEEEEcccc-cCCeEEEEEcCCCcEE------EEeHHHHHHHH
Confidence 99999999999999999998 5999999999999999999999999 9999999999999887 78999998888
Q ss_pred HHHHH
Q 047998 464 KDKLD 468 (558)
Q Consensus 464 ~~ll~ 468 (558)
+ +++
T Consensus 562 ~-~~~ 565 (572)
T 2j3l_A 562 S-ILM 565 (572)
T ss_dssp H-HHC
T ss_pred H-HHh
Confidence 7 654
No 11
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=100.00 E-value=8.9e-61 Score=520.83 Aligned_cols=357 Identities=16% Similarity=0.184 Sum_probs=304.2
Q ss_pred CCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCC
Q 047998 106 PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPT 185 (558)
Q Consensus 106 ~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt 185 (558)
.++|+++|+|.|+.+|++|++++++.|+++||++|.||+|++.++|.+ +||++.|.++||+| |++| +.++||||
T Consensus 37 ~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~-sg~~~~~~~emy~~-d~~~----~~l~LRP~ 110 (471)
T 3a32_A 37 TGAGVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKV-SGHIEFYRNNMYLF-DIEG----HEFAVKPM 110 (471)
T ss_dssp HCTTCCCBCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHH-TCCCTTGGGGSEEE-EETT----EEEEECSC
T ss_pred cCCEEEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhh-ccCccccccceEEE-ecCC----cEEEEccc
Confidence 479999999999999999999999999999999999999999999954 78999999999999 6666 48999999
Q ss_pred CcHHHHHHHHHhHhhcC---CCCeEEEEEeeeeecCCCC--CCccccceEEEecceeeeCChHHHHHHHHHHHHHHHHHH
Q 047998 186 SETIVNHMFTQWIHSYR---DLPLLVNQWANVTRWEMRT--KPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFA 260 (558)
Q Consensus 186 ~e~~i~~~~~~~i~s~r---dLPlkl~q~~~vfR~E~~~--rGllR~REF~q~d~h~~~~~~~~a~~e~~~il~~y~~l~ 260 (558)
+|++++++|+++++||+ +||+|+||||+|||||.++ +||+|+|||+|+|+|+|+ +++++.+|+..+++++.+++
T Consensus 111 ~t~~i~~~~~~~~~s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~-~~~~~~de~~e~i~~~~~~l 189 (471)
T 3a32_A 111 NCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIV-PGGRVIDVVYDVFEEMKLVL 189 (471)
T ss_dssp SHHHHHHHHHHHHHHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEE-EGGGHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhhhhccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEc-ChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 9999999999999999998 899999999999999995 56666677778888888887
Q ss_pred HhhCCc-----eE--EeecCCch---hhccCCCcce----------------------------------EEEEEEcC--
Q 047998 261 YEHTAI-----PV--IAGRKSKV---ETFAGASRTY----------------------------------TIEAMMGD-- 294 (558)
Q Consensus 261 ~~~l~i-----pv--~~g~k~~~---ekf~Ga~~~~----------------------------------~ie~~~~d-- 294 (558)
...|++ ++ ..+..... +++.|....| .++..+.|
T Consensus 190 ~~~lGl~~~~~~~~l~i~~~~~~~~~e~~~g~~~~~d~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~gp~i~~~l~d~~ 269 (471)
T 3a32_A 190 ERLFKLGVSSETFKVRLSMSDKSLIGKEFMGSKEEWEGAEEALREAASRINEKYGIDIVELEGEAAFYGPKLDFIMMVEE 269 (471)
T ss_dssp HHTSCCCCSTTTEEEEEECCCGGGBTTTBCSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEETTCSBTTBCEEEEEEEEES
T ss_pred HHhhCCCcCCCCeEEEEecCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHhcCCceEecccchhhCCCccceEEeccH
Confidence 654677 35 34444322 5555543222 45655656
Q ss_pred ---ccceeecceEecCcccccccCeEEeC--CCCcee--eEeeeccchHHHHHHHHHHHhCCCCCCCCCCCCCCCcEEEE
Q 047998 295 ---KRALQAGTSHNLGQNFSLAFGTQFTD--ENGQRQ--HVWQTSWAISTRFVGGIIMTHGDDTGLMLPPRIAPIQVVIV 367 (558)
Q Consensus 295 ---gr~lq~gti~~Lg~~~s~~f~i~y~d--~~g~~~--~v~~~s~Gi~eRli~~lie~~~D~~Gl~lP~~lAP~qV~Ii 367 (558)
++.+|+|++ .++.++++.|+++|.+ .+|... .++++++|.++|++++++++++ | .||+|+||+||+|+
T Consensus 270 ~~l~~~~~~g~~-~lD~~l~r~~d~~Yyt~~~~G~~e~~~i~~~i~GgieRli~~lie~~~---g-~~p~~~ap~qv~Ii 344 (471)
T 3a32_A 270 SGVSKEWQMGTI-QFDFNLPRRFRLYDVVREEFGIEEVYIIHRALLGSIERFLGVYLEHRR---G-RMPFTLAPIQFAVI 344 (471)
T ss_dssp SSCEEEEEEEEE-EEESSHHHHTTHHHHHHHHHCCSCEEEEEEEEEEEHHHHHHHHHHHTT---T-CCCGGGCSCSEEEE
T ss_pred HhhhhhheeeeE-EecccccccCCceEeccccCCceeeEEEeccccCcHHHHHHHHHHHhC---C-CCCCCcCCceEEEE
Confidence 577888864 5999999999999988 556543 3567889889999999999874 4 89999999999999
Q ss_pred eCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeC-CCCCCHHHHHHHHH-HcCCCEEEEeCceecCCCeEEEEEcCCCCc
Q 047998 368 PIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDD-SDQRTPGWKFNFWE-MKGIPLRIEIGPRDVSSGSVVISRRDVPGK 445 (558)
Q Consensus 368 pi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~-r~~~slgkk~~~ae-~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek 445 (558)
|+..+++.+++..++|.+|++.||++|++|++|+ ++ .++|+||++|+ ++|+|++|+||++|+++|+|+||+|+++++
T Consensus 345 p~~~~~~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~~~-~~~g~k~~~a~~~~gip~~iiiG~~e~~~~~V~vr~r~~~~q 423 (471)
T 3a32_A 345 AVKTGGEVDREIEDLASSIAKGLLDKGFRVAVKGSSK-TGLSSDVRHIESTAKPAVNVFIGAKEVREKVLDVRVFDLESM 423 (471)
T ss_dssp EEECSSTTHHHHHHHHHHHHHHHHHTTCEEEEEEEET-TTHHHHHHHHHHTTCCSEEEEECHHHHHHTEEEEEEEETTTT
T ss_pred EccCcccccHHHHHHHHHHHHHHHHCCCEEEEecCCC-CCHHHHHHHHHHhcCCCEEEEECchhhhCCEEEEEECCCCcc
Confidence 9974322223578999999999999999999999 77 59999999999 999999999999999999999999999984
Q ss_pred cccccccccChH-----HHHHHHHHHHHHHHHHHHHHHH
Q 047998 446 QGKVFGISMEPS-----ILEAYVKDKLDEIQSALLERAT 479 (558)
Q Consensus 446 ~~~~~~v~v~~~-----el~~~i~~ll~~~~~~L~~rA~ 479 (558)
. +..|+++ ++++.|.++|++||++|++.|-
T Consensus 424 ~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (471)
T 3a32_A 424 K----RRRLAIAYGDAADAVENLAAVAEELESPVRSLSG 458 (471)
T ss_dssp E----EEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred c----eEEEeecccchhHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 1267777 9999999999999999999886
No 12
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=100.00 E-value=9.6e-60 Score=530.81 Aligned_cols=368 Identities=17% Similarity=0.262 Sum_probs=308.8
Q ss_pred ceeecCCCCcchHHHHHHHHHhc------------cccccCC--CCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeec
Q 047998 77 RERVITPRSQDFNAWYLDVISNA------------ELADYGP--VRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYF 142 (558)
Q Consensus 77 ~~~~i~~~~~~~~~wy~~~~~~a------------~l~d~~~--vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~t 142 (558)
+++|+.+.+.+-...|.+.+++| +++++.+ ++|+++|+|.|+.+|++|++++++.+.++||++|.|
T Consensus 216 ri~g~~~~~~~~l~~~~~~l~ea~~rdhr~lg~~l~l~~~~~~~~~G~~~~lP~g~~~~~~l~~~ir~~~~~~Gy~eV~t 295 (645)
T 1nyr_A 216 RIYGTAFFDKKELKAHLQMLEERKERDHRKIGKELELFTNSQLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYT 295 (645)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTCHHHHHHHTTCEEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEECBC
T ss_pred HHHHHhcCCHHHhhhhhhhhhhhhhhhHHHHhhhcceEEecccCCCceeEECCCHHHHHHHHHHHHHHHHHHcCCEEEEC
Confidence 67788877644444455555554 4544443 689999999999999999999999999999999999
Q ss_pred CccccHhhHhhhhcCccccCCceEEEEecCC-ccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCC
Q 047998 143 PQFIPYSFIEKEASHVEGFSPELALVTIGGG-KELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRT 221 (558)
Q Consensus 143 P~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~-~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~ 221 (558)
|+|++.++|.+ +|||+.|.++||.++|.+| + .++||||+|++++++|+++++||++||+|+||+|+|||+|.++
T Consensus 296 P~l~~~~l~~~-sG~~d~~~~~mf~~~d~~~~~----~~~LrP~~~~~~~~~~~~~~~syr~LPlrl~~~g~~fR~E~~~ 370 (645)
T 1nyr_A 296 PVLANVDLYKT-SGHWDHYQEDMFPPMQLDETE----SMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASG 370 (645)
T ss_dssp CSEEETHHHHH-HTHHHHCTTSSCCCEEETTTE----EEEECSSSHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCTT
T ss_pred CeeccHHHHhh-CCCccccccCcceeEecCCCe----EEEeCCCCCHHHHHHHHhhhhhccCCCeEEEEeccEEecCCCc
Confidence 99999999955 7999999999999998876 5 7999999999999999999999999999999999999999995
Q ss_pred --CCccccceEEEecceeeeCChHHHHHHHHHHHHHHHHHHHhhCCc-eEE--eecCCc--hhhccCCCc----------
Q 047998 222 --KPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAI-PVI--AGRKSK--VETFAGASR---------- 284 (558)
Q Consensus 222 --rGllR~REF~q~d~h~~~~~~~~a~~e~~~il~~y~~l~~~~l~i-pv~--~g~k~~--~ekf~Ga~~---------- 284 (558)
+||+|+|||+|+|+|+|+ +++++.+|+..+++++.+++.. |++ ++. .+..+. .+++.|+..
T Consensus 371 ~~~GL~R~ReF~Q~d~~~f~-~~~~~~d~~~e~i~~~~~~l~~-lGl~~~~~~l~~~~~~~~e~~~g~~e~~~~~~~~l~ 448 (645)
T 1nyr_A 371 AVSGLQRVRGMTLNDSHIFV-RPDQIKEEFKRVVNMIIDVYKD-FGFEDYSFRLSYRDPEDKEKYFDDDDMWNKAENMLK 448 (645)
T ss_dssp TCBTTTBCSEEEEEEEEEEE-CGGGHHHHHHHHHHHHHHHHHH-TTCCCEEEEEEECCCCCSSSSSCCHHHHHHHHHHHH
T ss_pred cccCcceeeeEEEccEEEEc-CHHHHHHHHHHHHHHHHHHHHH-cCCCeEEEEEeCCCcccchhhcCChHHHHHHHHHHH
Confidence 799999999999999995 6777777788888888877765 666 442 222211 133333321
Q ss_pred --------------------ceEEEEEEcC--ccceeecceEecCcccccccCeEEeCCCCcee---eEeeeccchHHHH
Q 047998 285 --------------------TYTIEAMMGD--KRALQAGTSHNLGQNFSLAFGTQFTDENGQRQ---HVWQTSWAISTRF 339 (558)
Q Consensus 285 --------------------~~~ie~~~~d--gr~lq~gti~~Lg~~~s~~f~i~y~d~~g~~~---~v~~~s~Gi~eRl 339 (558)
.-.++..+.| |+.+|+||++ ++.+++++|+++|.+.+|+.+ .+|++.+|.++|+
T Consensus 449 ~~l~~~g~~~~~~~~~~~~ygpki~~~~~d~lg~~~~~gtiq-~D~~l~~~~d~~Y~~~~g~~~~P~~ih~~~~GgieR~ 527 (645)
T 1nyr_A 449 EAADELGLSYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQ-LDFLLPERFDLTYIGQDGEHHRPVVIHRGVVSTMERF 527 (645)
T ss_dssp HHHHHHCCCCCCEESCSBTTBCEEEEEECCTTSCCEEEEEEE-EESSHHHHTTCCEECTTSCEECCEEEEEEEEEEHHHH
T ss_pred HHHHHcCCCeEecCCCCceeCCccceehhhhhCchhhcceEE-eecccccccceEEECCCCCccCcEEEEeccCCcHHHH
Confidence 1235555666 7889999987 888899999999999988654 3566888889999
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCC
Q 047998 340 VGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGI 419 (558)
Q Consensus 340 i~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~Gi 419 (558)
+++|++++++ .||+|+||+||+|+|++ + ++..++|.+|++.|+++|++|++|+++ .++|+||++|++.|+
T Consensus 528 i~~liE~~~~----~~P~~lap~qv~vip~~-~----~~~~~~a~~i~~~Lr~~Gi~v~~D~~~-~~~g~k~~~a~~~g~ 597 (645)
T 1nyr_A 528 VAFLTEETKG----AFPTWLAPKQVQIIPVN-V----DLHYDYARQLQDELKSQGVRVSIDDRN-EKMGYKIREAQMQKI 597 (645)
T ss_dssp HHHHHHHHTT----CCCTTTCSSCEEEEESS-H----HHHHHHHHHHHHHHHTTTCCEEECCSS-CCHHHHHHHHHHHTC
T ss_pred HHHHHHHhcC----CCCCCCCCceEEEEEcc-c----HHHHHHHHHHHHHHHhCCCEEEEECCC-CCHHHHHHHHHhcCC
Confidence 9999998753 89999999999999997 1 137899999999999999999999998 499999999999999
Q ss_pred CEEEEeCceecCCCeEEEEEcCCCCccccccccccChHHHHHHHHHHHH
Q 047998 420 PLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLD 468 (558)
Q Consensus 420 P~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~ll~ 468 (558)
||+|+||++|+++|+|+||+|+++++. .++++++++.|++.++
T Consensus 598 p~~iivG~~e~~~~~V~vr~r~~~~~~------~v~~~e~~~~l~~~~~ 640 (645)
T 1nyr_A 598 PYQIVVGDKEVENNQVNVRQYGSQDQE------TVEKDEFIWNLVDEIR 640 (645)
T ss_dssp SEEEEECHHHHHTTEEEEEETTSSCCC------EEEHHHHHHHHHHHHH
T ss_pred CEEEEEccchhhCCEEEEEECCCCcEE------EEEHHHHHHHHHHHHh
Confidence 999999999999999999999999886 7899999988876654
No 13
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=100.00 E-value=2.6e-56 Score=488.47 Aligned_cols=364 Identities=18% Similarity=0.178 Sum_probs=302.9
Q ss_pred HHHHHHHHHhcccccc-----CCCCcceEeCchhHHHHHHHHHHHHHHHH--HcCCeeeecCccccHhhHhhhhcCcccc
Q 047998 89 NAWYLDVISNAELADY-----GPVRGTMVIRPYGYAIWEAIQDYLNVKFK--ETGHSNMYFPQFIPYSFIEKEASHVEGF 161 (558)
Q Consensus 89 ~~wy~~~~~~a~l~d~-----~~vkG~~~~lP~g~~i~~~I~~~i~~~~~--~~G~~ei~tP~l~~~~l~~k~sgh~~~f 161 (558)
.+-..+++.++|++-. +.++|+++|+|.|+.++++|++++++++. ++||++|.||+|.+.++| +.||||+.|
T Consensus 5 ~~~~~~l~~r~g~i~~~~ei~~~~~G~~d~~P~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~l~-~~SGh~~~f 83 (505)
T 1ati_A 5 LDELVALCKRRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVL-HYSGHEATF 83 (505)
T ss_dssp HHHHHHHHHHTTSEEETTGGGTCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHH-HHTSHHHHC
T ss_pred HHHHHHHHHHCCCEEcchhhcCCCCCcceeCccHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHHHH-HhcCChhhc
Confidence 3558899999999853 34699999999999999999999999998 999999999999999999 679999999
Q ss_pred CCceEEEEe------------------------------------------------------------cCC-cc-----
Q 047998 162 SPELALVTI------------------------------------------------------------GGG-KE----- 175 (558)
Q Consensus 162 ~~Emy~~~~------------------------------------------------------------~g~-~~----- 175 (558)
.++||.+.+ .++ .+
T Consensus 84 ~d~m~~~~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~i~~p~~~~~~m~~~~~~cp~~~~~~~~~~~~ 163 (505)
T 1ati_A 84 ADPMVDNRITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPR 163 (505)
T ss_dssp EEEEEEC--------------------------------------------------------------------CCCCE
T ss_pred CccceeccccccccchhhhhhhhhhhhccccccccccHHHHHHHHHhhccccccccccccccccccCCccCccccccccc
Confidence 999987421 010 00
Q ss_pred ---------------ccccccccCCCcHHHHHHHHHhHhhc-CCCCeEEEEEeeeeecCCCCC-CccccceEEEecceee
Q 047998 176 ---------------LEEKLVVRPTSETIVNHMFTQWIHSY-RDLPLLVNQWANVTRWEMRTK-PFVRTLEFLWQEGHTA 238 (558)
Q Consensus 176 ---------------l~e~l~LRPt~e~~i~~~~~~~i~s~-rdLPlkl~q~~~vfR~E~~~r-GllR~REF~q~d~h~~ 238 (558)
.++.++|||++|++++.+|++++.|| ++||+++||||+|||||.+++ ||+|+|||+|.|+|+
T Consensus 164 ~fnlmf~t~~gpt~ee~~~~~LRPE~t~~i~~~~~~~~~sy~r~LP~rl~qig~~FR~E~~pr~GL~R~REF~q~d~~~- 242 (505)
T 1ati_A 164 YFNMMFQDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEY- 242 (505)
T ss_dssp EEECBEEEECSSCCCGGGEEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEEE-
T ss_pred hhhhhhhcccCCccccccceeecccchhHHHHHHHHHHHhcCCCCCEEEEEeeceeeCCCCCCCCCCcccceEEeeEEE-
Confidence 02468999999999999999999999 999999999999999996655 999999999999995
Q ss_pred eCChHHHHHHHHHHHHHHHHHHHhhCCceEEeecCC--chhhcc-CCCcceEEEEEEcCccc----eeecceEecCcccc
Q 047998 239 HATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKS--KVETFA-GASRTYTIEAMMGDKRA----LQAGTSHNLGQNFS 311 (558)
Q Consensus 239 ~~~~~~a~~e~~~il~~y~~l~~~~l~ipv~~g~k~--~~ekf~-Ga~~~~~ie~~~~dgr~----lq~gti~~Lg~~~s 311 (558)
+++++++.+++..+++.|.+++.. |++|....... ..+++. ++..+|.+|++++.+.. ++.++.++|+...+
T Consensus 243 f~~~e~~~~~~~~~i~~~~~i~~~-LGl~~~~v~~~~~~~~~~~~~~~~~~d~E~~~p~~~~e~~g~~~~~d~~L~~~~~ 321 (505)
T 1ati_A 243 FVRPGEDEYWHRYWVEERLKWWQE-MGLSRENLVPYQQPPESSAHYAKATVDILYRFPHGSLELEGIAQRTDFDLGSHTK 321 (505)
T ss_dssp EECGGGHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEECCTTTSCTTCSEEEEEEEEETTEEEEEEEEEECTTHHHHHHCS
T ss_pred EECHHHHHHHHHHHHHHHHHHHHH-cCCCeEEEEECCCChHhhhcccHHHHhHHhhcCCCCccchhhhcccceecchhhc
Confidence 589999999999999999999876 78763211111 135665 78888999988876543 23344444443332
Q ss_pred ----------------cccCeEEeCCCCcee---eEeeeccchHHHHHHHHHHHh--------CC-CCCCCCCCCCCCCc
Q 047998 312 ----------------LAFGTQFTDENGQRQ---HVWQTSWAISTRFVGGIIMTH--------GD-DTGLMLPPRIAPIQ 363 (558)
Q Consensus 312 ----------------~~f~i~y~d~~g~~~---~v~~~s~Gi~eRli~~lie~~--------~D-~~Gl~lP~~lAP~q 363 (558)
.+|+++|.+.+|+.+ ++.++|+| ++|++++|++++ +| +.|+.||+++||+|
T Consensus 322 ~~~~~~~~~~~~~n~~~~~~~~y~d~~g~~~y~p~vig~s~G-ieRli~alle~~~~~~~~~~gd~~~gl~~p~~laP~~ 400 (505)
T 1ati_A 322 DQEALGITARVLRNEHSTQRLAYRDPETGKWFVPYVIEPSAG-VDRGVLALLAEAFTREELPNGEERIVLKLKPQLAPIK 400 (505)
T ss_dssp STTTTTCCSCCCCCSCCCSCCCEECSSSCCEECCEEEEEEEE-HHHHHHHHHHHHEEEEECTTSCEEEEECCCGGGCSCS
T ss_pred cccccceeeeecccccceeEEEEEcCCCCeeecceEEEEeeE-HHHHHHHHHHHHhhhcccccccccccccCCcccCCce
Confidence 789999999877642 37788899 599999999886 55 67889999999999
Q ss_pred EEEEeCCCCcchhHHHHHHHHHHHHHHhhCC-cEEEEeCCCCCCHHHHHHHHHHcCCCEEEEeCceecC---------CC
Q 047998 364 VVIVPIWKKADEKTGVLSAALSAKEVLQKSG-IRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVS---------SG 433 (558)
Q Consensus 364 V~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~G-irv~vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~---------~~ 433 (558)
|+|+|+++++ +++.++|.+|++.||++| ++|.+|++ . ++|+||++|++.|+||+|+||++|++ +|
T Consensus 401 v~Vip~~~~~---~~~~~~a~~l~~~Lr~~G~i~v~~D~~-~-sig~k~~~ad~~g~p~~iivG~~el~~~~~~~~~~~g 475 (505)
T 1ati_A 401 VAVIPLVKNR---PEITEYAKRLKARLLALGLGRVLYEDT-G-NIGKAYRRHDEVGTPFAVTVDYDTIGQSKDGTTRLKD 475 (505)
T ss_dssp EEEEESCSSC---HHHHHHHHHHHHHHHTTCSSCEEECCC-S-CHHHHHHHHHHTTCSEEEEECHHHHTCCTTSCCTTTT
T ss_pred EEEEEcCCcc---HHHHHHHHHHHHHHhccCCEEEEECCC-C-CHHHHHHHHHHCCCCEEEEEChHHhhhccccccccCC
Confidence 9999998632 247899999999999999 99999998 4 99999999999999999999999999 99
Q ss_pred eEEEEEcCCCCccccccccccChHHHHHHHHHHH
Q 047998 434 SVVISRRDVPGKQGKVFGISMEPSILEAYVKDKL 467 (558)
Q Consensus 434 ~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~ll 467 (558)
+|+||+|++++|. .|+++++++.|++++
T Consensus 476 ~V~vr~r~t~~q~------~v~~~el~~~l~~~l 503 (505)
T 1ati_A 476 TVTVRDRDTMEQI------RLHVDELEGFLRERL 503 (505)
T ss_dssp EEEEEETTTCCEE------EEEHHHHHHHHHHHH
T ss_pred EEEEEECCCCceE------EEEHHHHHHHHHHHh
Confidence 9999999999887 799999998887654
No 14
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=100.00 E-value=1.9e-53 Score=479.37 Aligned_cols=411 Identities=17% Similarity=0.212 Sum_probs=275.7
Q ss_pred ccCCCCCCchhhHHHHhhcccccCCCceee-cCCCCcch-HHHHHHHHHhccccc-----cCCCCcceEeCchhHHHHHH
Q 047998 51 AASSPPETDDKVVEIEKNRASQDRGNRERV-ITPRSQDF-NAWYLDVISNAELAD-----YGPVRGTMVIRPYGYAIWEA 123 (558)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~-~~wy~~~~~~a~l~d-----~~~vkG~~~~lP~g~~i~~~ 123 (558)
+++++.|.++ |+..+.+.|..-..+.. .++++..| .+--.+++.++|++- |++++|+++|+|.|+++|++
T Consensus 30 ~~a~~~~i~~---av~~l~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~r~gf~~~~~eiy~g~~G~~d~lP~G~~l~~~ 106 (693)
T 2zt5_A 30 DKAPQVDVDK---AVAELKARKRVLEAKELALQPKDDIVDRAKMEDTLKRRFFYDQAFAIYGGVSGLYDFGPVGCALKNN 106 (693)
T ss_dssp -------------------------------------CCCHHHHHHHHHHTTSEEETTGGGTCCTTCEEECHHHHHHHHH
T ss_pred cCCCHHHHHH---HHHHHHHHHHHHHhhhhccccccccccHHHHHHHHHhCCCcccchhhcCCCCCeEEECCChHHHHHH
Confidence 4556667777 55555555544443322 12223333 466789999999984 34579999999999999999
Q ss_pred HHHHHHHHHH-HcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCC-----------------------------
Q 047998 124 IQDYLNVKFK-ETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGG----------------------------- 173 (558)
Q Consensus 124 I~~~i~~~~~-~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~----------------------------- 173 (558)
|+++|+++|. +.||++|.||+|+|.+|| +.||||+.|.++|+.+++.+.
T Consensus 107 Ie~~~r~~~~~~~g~~EV~tP~l~~~~lw-k~SGH~~~f~d~m~~~~~~~e~yr~D~l~e~~~~~~~~~~~~~~~~~~e~ 185 (693)
T 2zt5_A 107 IIQTWRQHFIQEEQILEIDCTMLTPEPVL-KTSGHVDKFADFMVKDVKNGECFRADHLLKAHLQKLMSDKKCSVEKKSEM 185 (693)
T ss_dssp HHHHHHHHTHHHHTCEECCCCSEEEHHHH-HHHTHHHHCEEEEEEBSSSCCEEEHHHHHHHHHHHHHHSTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCcEEEEeCCcccHHHH-hhcCCcccccccceeeccCCceeeccHhHHHHHHHhhccccccHHHHHHH
Confidence 9999999998 669999999999999999 679999999987665433220
Q ss_pred ------------------------------cc------------------ccccccccCCCcHHHHHHHHHhHhh-cCCC
Q 047998 174 ------------------------------KE------------------LEEKLVVRPTSETIVNHMFTQWIHS-YRDL 204 (558)
Q Consensus 174 ------------------------------~~------------------l~e~l~LRPt~e~~i~~~~~~~i~s-~rdL 204 (558)
.+ -++.++|||+.+++++.+|++++.+ |++|
T Consensus 186 ~~~~~~l~~~~~eel~~li~~~~~~~P~~g~~~~~~~~fnlmf~t~igp~~~~~~~LRPEtaqg~f~~f~r~~~~~~~~L 265 (693)
T 2zt5_A 186 ESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFKTFIGPGGNMPGYLRPETAQGIFLNFKRLLEFNQGKL 265 (693)
T ss_dssp HHHHTTTTTCCHHHHHHHHHHTTCBCSSSCCBBCCCEEEECCCEEECSSSSSSEEEECSCSHHHHHTTHHHHHHHTTTCS
T ss_pred HHHHhhccCCCHHHHHHHHHHcCCCCCCCCCCCCCcchhheeeeccccCCCCcceeeccccchHHHHHHHHHHHHhCcCC
Confidence 00 0257899999999999999999987 7999
Q ss_pred CeEEEEEeeeeecCCCC-CCccccceEEEecceeeeCChHHH--------------------------------------
Q 047998 205 PLLVNQWANVTRWEMRT-KPFVRTLEFLWQEGHTAHATPEEA-------------------------------------- 245 (558)
Q Consensus 205 Plkl~q~~~vfR~E~~~-rGllR~REF~q~d~h~~~~~~~~a-------------------------------------- 245 (558)
|+++||||++||||.+| .||+|+|||+|.|+|+|+...+..
T Consensus 266 P~~~aqiG~~fRnEisPr~GLlR~REF~q~d~e~F~~p~~~~~~~y~~v~da~~~~~~~~~~~~~~~~~~~~~~ea~~~g 345 (693)
T 2zt5_A 266 PFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHFVDPSEKDHPKFQNVADLHLYLYSAKAQVSGQSARKMRLGDAVEQG 345 (693)
T ss_dssp CEEEEEEEEEECCCSSCCSGGGSCSEEEEEEEEEEECTTCCCCTTGGGTTTCEEEEECHHHHHTTCCCEEEEHHHHHHHT
T ss_pred CEEEEeecceecCCCCCCCCCccceeeEEccceEEeCcchhcchhHHHHHHHHHhhhhhhhhccccccccchhhhhhhhc
Confidence 99999999999999665 599999999999999996433221
Q ss_pred ---HHHHHHHHHHHHHHHHhhCCce---EEeecCCchhhccCCCcceEEEEEEcCccc----------------------
Q 047998 246 ---EKEAMQMIDIYTKFAYEHTAIP---VIAGRKSKVETFAGASRTYTIEAMMGDKRA---------------------- 297 (558)
Q Consensus 246 ---~~e~~~il~~y~~l~~~~l~ip---v~~g~k~~~ekf~Ga~~~~~ie~~~~dgr~---------------------- 297 (558)
.+++..++..+..++.. ++++ +........++..++...|.+++..+.|..
T Consensus 346 ~i~~e~~~~~i~~~~~f~~~-lGi~~~~~~~~~~~~~e~a~ya~~~~d~e~~~~~g~~e~~~~a~r~~~dL~~~~~~s~~ 424 (693)
T 2zt5_A 346 VINNTVLGYFIGRIYLYLTK-VGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHARATKV 424 (693)
T ss_dssp SSCCHHHHHHHHHHHHHHHH-HTCCGGGEEEEECCGGGSCTTCSSEEEEEEEETTEEEEEEEEECCCSHHHHHHHHHHTC
T ss_pred ccchHHHHHHHHHHHHHHHH-cCcCccEEEEeccCchhhccchhhhhhehhhccCChHHHHHHHHHHHHHHHHHHHHhcc
Confidence 12233344333333332 3332 221111123344444445544433221100
Q ss_pred -ee-------------------------------------------------------e--------cceEecCcccccc
Q 047998 298 -LQ-------------------------------------------------------A--------GTSHNLGQNFSLA 313 (558)
Q Consensus 298 -lq-------------------------------------------------------~--------gti~~Lg~~~s~~ 313 (558)
+. + ||+|++.. ..
T Consensus 425 ~l~~~~~~~~p~~~~~~~~~~~~~~~g~~i~~~Ap~i~d~L~~~~~~~~~~l~~~L~~~g~i~i~vdGt~Fei~~---~~ 501 (693)
T 2zt5_A 425 PLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICDECYITEMEMLLNEKGEFTIETEGKTFQLTK---DM 501 (693)
T ss_dssp CCCEEEC-------------------------------------------------------------------------
T ss_pred chhhhcccCcccceeeeeecCChHHHHHHHHhcccHHHHHhhhhhHHHHHHHHHHHHhcCCEEEEECCEEEEecc---cc
Confidence 00 0 11122210 01
Q ss_pred cCe-EEeCC-CCce-ee-EeeeccchHHHHHHHHHHHhCC-----CC--CCCCCCCCCCCcEEEEeCCCCcchhHHHHHH
Q 047998 314 FGT-QFTDE-NGQR-QH-VWQTSWAISTRFVGGIIMTHGD-----DT--GLMLPPRIAPIQVVIVPIWKKADEKTGVLSA 382 (558)
Q Consensus 314 f~i-~y~d~-~g~~-~~-v~~~s~Gi~eRli~~lie~~~D-----~~--Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~ 382 (558)
+++ +|.+. .|.+ .+ +++.||| ++|++++|+++|.| ++ |+.||+|+||+||+|+|+++++ ...++
T Consensus 502 ~~~~~y~~~~~Ggry~P~Vi~~s~G-igRli~aLie~~~~~~~~~~~r~g~~~P~~lAP~qV~Vipl~~~~----~~~~~ 576 (693)
T 2zt5_A 502 INVKRFQKTLYVEEVVPNVIEPSFG-LGRIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQ----EFMPF 576 (693)
T ss_dssp ----------CCEEECCEEEEEEEE-HHHHHHHHHHHHEEECSSTTCCEEECCCTTTSSCSEEEEESCCST----TTHHH
T ss_pred cceeeEEeccCCcEecCcceeCeeh-HHHHHHHHHHHhccccccccccccccCCCCCCCCeEEEEEecCcH----HHHHH
Confidence 122 13222 3332 22 5588999 78999999998666 45 7899999999999999998532 26889
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEEEEeCceec--CCCeEEEEEcCCCCccccccccccChHHHH
Q 047998 383 ALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDV--SSGSVVISRRDVPGKQGKVFGISMEPSILE 460 (558)
Q Consensus 383 a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl--~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~ 460 (558)
|.+|++.||++||+|++|+++ .++|+||++|++.|+||+|+||++|+ ++|+|+||+|++++|. .|++++++
T Consensus 577 A~~l~~~Lr~~Gi~v~~D~~~-~sigkk~k~Ad~~G~p~~IiIG~~El~~~~g~Vtvr~r~t~eq~------~v~l~el~ 649 (693)
T 2zt5_A 577 VKELSEALTRHGVSHKVDDSS-GSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQI------RAEISELP 649 (693)
T ss_dssp HHHHHHHHHHTTCCEEECCCC-SCHHHHHHHHHHTTCCEEEEECHHHHTSSSCEEEEEETTTCCEE------EEETTTHH
T ss_pred HHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHcCCCEEEEEcchhhhccCCEEEEEECCCCceE------EEeHHHHH
Confidence 999999999999999999998 59999999999999999999999999 9999999999999887 78899998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCeeecccHHHHHHHHh
Q 047998 461 AYVKDKLDEIQSALLERATSFRDSNIVDVSSYEELKEAIS 500 (558)
Q Consensus 461 ~~i~~ll~~~~~~L~~rA~~~~~~~i~~v~~~ee~k~al~ 500 (558)
+.|++++++ ..+|+++.+.+-
T Consensus 650 ~~l~~~l~~-------------------~~~w~~~~~~~~ 670 (693)
T 2zt5_A 650 SIVQDLANG-------------------NITWADVEARYP 670 (693)
T ss_dssp HHHHHHHTT-------------------SSCHHHHHHHSC
T ss_pred HHHHHHHhC-------------------cccHHHHHHhcc
Confidence 888765542 477888887763
No 15
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=100.00 E-value=2.6e-54 Score=466.14 Aligned_cols=375 Identities=12% Similarity=0.001 Sum_probs=284.7
Q ss_pred eeecCCCCcch----HHHHHHHHHhcccccc--------CCCCcce-EeCchhHHHHHHHHHHHHHHH--HHcCCeeeec
Q 047998 78 ERVITPRSQDF----NAWYLDVISNAELADY--------GPVRGTM-VIRPYGYAIWEAIQDYLNVKF--KETGHSNMYF 142 (558)
Q Consensus 78 ~~~i~~~~~~~----~~wy~~~~~~a~l~d~--------~~vkG~~-~~lP~g~~i~~~I~~~i~~~~--~~~G~~ei~t 142 (558)
+.|+++++... .+-..+++.+.|++.. ++++|++ +|+|.|+.||++|++++++.+ .+.|+++|+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~l~krrgf~~~s~eiy~g~~~~~G~~~~~~P~G~~l~~~i~~~~~~~~~~~~~g~~ev~t 88 (454)
T 1g5h_A 9 ADGTQQPDAPEHAVAREALVDLCRRRHFLSGTPQQLSTAALLSGCHARFGPLGVELRKNLASQWWSSMVVFREQVFAVDS 88 (454)
T ss_dssp ----------------CHHHHHHHHTTSBCCCGGGGSHHHHHHCCSCCBCHHHHHHHHHHHHHHHHHHTTTCTTEEECCC
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHcCCccccchhcccCCCCCcceeeeCchHHHHHHHHHHHHHHHHhhhcCCeEEEEc
Confidence 34555554332 2347799999999854 2356888 999999999999999999885 5899999999
Q ss_pred CccccHhhHhhh-hcC---ccccCCceEEEEec-CCc--------cccccccccCCCcHHHHHHHHHhHhhcC-CCCeEE
Q 047998 143 PQFIPYSFIEKE-ASH---VEGFSPELALVTIG-GGK--------ELEEKLVVRPTSETIVNHMFTQWIHSYR-DLPLLV 208 (558)
Q Consensus 143 P~l~~~~l~~k~-sgh---~~~f~~Emy~~~~~-g~~--------~l~e~l~LRPt~e~~i~~~~~~~i~s~r-dLPlkl 208 (558)
|++.|.++|.++ .|| +++|.+++ +++. ++. -.++.++|||+++++++.+|+++++||+ +||+++
T Consensus 89 p~l~~~~~~~~s~~g~~~r~d~~~e~~--~~~g~~~eem~~~~~~~~~~~~~LRPeta~g~~~~f~~~~~s~r~~LP~~~ 166 (454)
T 1g5h_A 89 LHQEPGSSQPRDSAFRLVSPESIREIL--QDREPSKEQLVAFLENLLKTSGKLRATLLHGALEHYVNCLDLVNRKLPFGL 166 (454)
T ss_dssp CSEECCCCSSCCCCCEEECHHHHHHHH--CC---CHHHHHHHHHHHHHHSCEECSCSHHHHHHTHHHHHHHTTTBSCEEE
T ss_pred CccCChhhccccccCcccHHHHHHHHh--hccCCCHHHHHHHHHhhcCcceeecccccHHHHHHHhhhHhhcccCCCEEE
Confidence 999999998552 267 88886652 1111 000 0135799999999999999999999998 999999
Q ss_pred EEEeeeee---cCCCCC-CccccceEEEecceeeeCChHHHHHHHHHHHHHHHHHHHhhCCceEEeecC-CchhhccCCC
Q 047998 209 NQWANVTR---WEMRTK-PFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRK-SKVETFAGAS 283 (558)
Q Consensus 209 ~q~~~vfR---~E~~~r-GllR~REF~q~d~h~~~~~~~~a~~e~~~il~~y~~l~~~~l~ipv~~g~k-~~~ekf~Ga~ 283 (558)
+|||+||| +|.+++ ||+|+|||+|+|+|+| ++++++.+++..+++.+..++.. |++|...... ..++.- +.
T Consensus 167 aqig~~fR~~~nE~s~~~Gl~R~REF~q~E~~~F-~~pe~~~e~~~~~~~~~~~~~~~-lgi~~~~~r~~~~~~~~--a~ 242 (454)
T 1g5h_A 167 AQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVWF-TPTRTSSQWLDFWLRHRLLWWRK-FAMSPSNFSSADCQDEL--GR 242 (454)
T ss_dssp EEEEEEEEEEC---------CEEEEEEEEEEEEE-ECHHHHHHHHHHHHHHHHHHHHT-TCSSGGGEEEEEEECTT--SC
T ss_pred EEeeeeccCCcccccCCCCccccCceehhheEEE-eCHhhHHHHHHHHHHHHHHHHHH-cCCCceeEEecCCHHHH--Hh
Confidence 99999999 598755 9999999999999998 89999999999999999999876 7887211111 111111 46
Q ss_pred cceEEEEEEcCcc----ceeecceEecCcc--cccccCeEEeCCCCcee--eEeeeccchHHHHHHHHHHHhCCC-----
Q 047998 284 RTYTIEAMMGDKR----ALQAGTSHNLGQN--FSLAFGTQFTDENGQRQ--HVWQTSWAISTRFVGGIIMTHGDD----- 350 (558)
Q Consensus 284 ~~~~ie~~~~dgr----~lq~gti~~Lg~~--~s~~f~i~y~d~~g~~~--~v~~~s~Gi~eRli~~lie~~~D~----- 350 (558)
.++.+++.++.|. +++..|.|+|++. +++ |+++|.|. ++.. ++...|+| ++|+++++++++.++
T Consensus 243 ~~~~ie~~~p~g~~e~~g~~~~td~~l~~~~~~s~-~~l~y~d~-~~~~~P~vi~~s~G-v~R~i~aile~~~~~~~~~~ 319 (454)
T 1g5h_A 243 KGSKLYYSFPWGKEPIETLWNLGDQELLHTYPGNV-STIQGRDG-RKNVVPCVLSVSGD-VDLGTLAYLYDSFQLAENSF 319 (454)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEESHHHHHHSTTCG-GGSCEEET-TEEECCEEEEEEEE-HHHHHHHHHHHHEEC-----
T ss_pred cCCCcEEecCCCceEEEEecCCCHHHHHhccCCce-eeEEEECC-CCcEeeEEEeCccc-HHHHHHHHHHHhcchhhccc
Confidence 7788998888764 4444566667643 555 99999985 4232 35567777 889987777766332
Q ss_pred --------CCCCCCCCCCCCcEEEE-eCCCCcchhHHHHHHHHHHHHHHhhCCcEEE--EeCC-CCCCHHHHHHHHHHcC
Q 047998 351 --------TGLMLPPRIAPIQVVIV-PIWKKADEKTGVLSAALSAKEVLQKSGIRVK--LDDS-DQRTPGWKFNFWEMKG 418 (558)
Q Consensus 351 --------~Gl~lP~~lAP~qV~Ii-pi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~--vD~r-~~~slgkk~~~ae~~G 418 (558)
.|++||+|+||+||+|+ |++.+ +++.++|.+|++.|+++|++|+ +|++ + .++|+||++|+++|
T Consensus 320 ~~g~d~~r~~l~~P~~lAP~qV~Ii~~~~~~----e~~~~~A~~l~~~Lr~~Gi~v~~~~Ddr~~-~sigkk~r~Ad~~G 394 (454)
T 1g5h_A 320 ARKKSLQRKVLKLHPCLAPIKVALDVGKGPT----VELRQVCQGLLNELLENGISVWPGYSETVH-SSLEQLHSKYDEMS 394 (454)
T ss_dssp -------CCEECCCTTTCSCCEEEEECSSCH----HHHHHHHHHHHHHHHHTTCCEEEGGGSCCC-SCHHHHHHHHHHTT
T ss_pred ccCCcccceeEecCcccCCCeEEEEEeCCCc----HHHHHHHHHHHHHHHHCCCEEEEEecCCCC-CCHHHHHHHHHHcC
Confidence 46899999999999999 65421 2478999999999999999996 8997 6 59999999999999
Q ss_pred CCEEEEeCceecCCCeEEEEEcCCCCccccccccccChHHHHHHHHHHHHHHHH
Q 047998 419 IPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLDEIQS 472 (558)
Q Consensus 419 iP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~ll~~~~~ 472 (558)
+||+|+||++|+++|+|+||+|++++|. .|+++++++.|+++++.++.
T Consensus 395 iP~~IiVG~~Ele~g~VtvR~r~t~eq~------~v~l~el~~~l~~~l~~~~~ 442 (454)
T 1g5h_A 395 VLFSVLVTETTLENGLIQLRSRDTTMKE------MMHISKLRDFLVKYLASASN 442 (454)
T ss_dssp CSEEEEECHHHHHHCEEEEEETTTCCEE------EEETTSHHHHHHHHHHHHHH
T ss_pred CCEEEEECcchhhCCEEEEEECCCCcEE------EEEHHHHHHHHHHHHhccch
Confidence 9999999999999999999999999887 78999999999988886654
No 16
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=100.00 E-value=3.4e-50 Score=429.86 Aligned_cols=340 Identities=11% Similarity=0.039 Sum_probs=265.2
Q ss_pred HHHHHHhccccc-----c---CCCCcce-EeCchhHHHHHHHHHHHHHHHH-HcC-CeeeecCccccHhhHhhhhcCccc
Q 047998 92 YLDVISNAELAD-----Y---GPVRGTM-VIRPYGYAIWEAIQDYLNVKFK-ETG-HSNMYFPQFIPYSFIEKEASHVEG 160 (558)
Q Consensus 92 y~~~~~~a~l~d-----~---~~vkG~~-~~lP~g~~i~~~I~~~i~~~~~-~~G-~~ei~tP~l~~~~l~~k~sgh~~~ 160 (558)
-.+++++--++. | +.+.|++ +|+|.|+.|+++|++.+++.+. +.| +.+|.||+. ++| +.||||+.
T Consensus 69 l~~~~~rr~f~~~~~~~~~~~~~~~g~~p~~gP~G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~~---~~~-~~SGH~d~ 144 (459)
T 3ikl_A 69 LLEICQRRHFLSGSKQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALHH---KPG-PLLPGDSA 144 (459)
T ss_dssp HHHHHHHTTSBCSCTTTTCHHHHHTTCSCCBCHHHHHHHHHHHHHHHHHHTTSSCSCEECCCCSB---CCS-CCCSSCSC
T ss_pred HHHHHHhcCcccccchhcccCCCccccccccCCcHHHHHHHHHHHHHHHHhhccCceEeeccccc---ccc-ccCcchhh
Confidence 445676665553 2 3467888 9999999999999997777764 355 777999994 445 77999999
Q ss_pred cCCceEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcC-CCCeEEEEEeeeeecCC----CCCCccccceEEEecc
Q 047998 161 FSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYR-DLPLLVNQWANVTRWEM----RTKPFVRTLEFLWQEG 235 (558)
Q Consensus 161 f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~r-dLPlkl~q~~~vfR~E~----~~rGllR~REF~q~d~ 235 (558)
|. ++||||+++++...|+++++||+ +||+++.|||+|||+|. +.+||+|+|||+|.|+
T Consensus 145 ~~-----------------~~LRPeTaqg~~~nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~ 207 (459)
T 3ikl_A 145 FR-----------------GGLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASL 207 (459)
T ss_dssp CT-----------------TB-CSCSHHHHHHHTTTTTGGGTTBSSEEEEEEEEEECCC----------CCCCEEEEEEE
T ss_pred hc-----------------ceECCCCChhHHHHHhhhhhhccccCCeEEEEEeeeeecccccccCCCCcccccceeeeeE
Confidence 95 89999999999999999999999 99999999999999995 3569999999999999
Q ss_pred eeeeCChHHHHHHHHHHHHHHHHHHHhhCCce---EEeecCCchhhccCCCcceEEEEEEcCccceeec----ceEecCc
Q 047998 236 HTAHATPEEAEKEAMQMIDIYTKFAYEHTAIP---VIAGRKSKVETFAGASRTYTIEAMMGDKRALQAG----TSHNLGQ 308 (558)
Q Consensus 236 h~~~~~~~~a~~e~~~il~~y~~l~~~~l~ip---v~~g~k~~~ekf~Ga~~~~~ie~~~~dgr~lq~g----ti~~Lg~ 308 (558)
|+| ++++++++++..+++....++.. |++| +...+.. .++ |..+|.||+.++.|.+-..| |.|+|.+
T Consensus 208 ~~F-~~Pe~~~e~~~~~~~~~~~~~~~-LGi~~~~~r~~~~~-~ee---A~~~~DiE~~~p~G~~E~~g~sn~tDfqL~~ 281 (459)
T 3ikl_A 208 VWF-TPPRTSNQWLDFWLRHRLQWWRK-FAMSPSNFSSSDCQ-DEE---GRKGNKLYYNFPWGKELIETLWNLGDHELLH 281 (459)
T ss_dssp EEE-ECGGGHHHHHHHHHHHHHHHHHH-HCSSGGGEEEEEEC-CSS---SSCEEEEEEECSSCEEEEEEEEEEETHHHHH
T ss_pred EEE-eChhHHHHHHHHHHHHHHHHHHH-hCCChhhEEEeecC-chH---HHhhcCeEEEcCCceEEEeeeeccchhhhhc
Confidence 998 99999999998888766666655 5665 4333221 122 67789999999886432212 2333332
Q ss_pred ccccccCeEEeCCCCcee---eEeeeccchHHHHHHHHHHHhCCCCC-------------CCCCCCCCCCcEEEEeCCCC
Q 047998 309 NFSLAFGTQFTDENGQRQ---HVWQTSWAISTRFVGGIIMTHGDDTG-------------LMLPPRIAPIQVVIVPIWKK 372 (558)
Q Consensus 309 ~~s~~f~i~y~d~~g~~~---~v~~~s~Gi~eRli~~lie~~~D~~G-------------l~lP~~lAP~qV~Iipi~~~ 372 (558)
....++.+|.+.+|++. ++..+++| ++|++.++++++.|+.| ++||+|+||+||+|+ +..+
T Consensus 282 -~~~~~~~~~~~~dg~~k~~P~vi~~s~G-v~R~~~AiLe~~~de~~~~~~~~~~~~R~vl~lP~~LAP~qV~Ii-i~~~ 358 (459)
T 3ikl_A 282 -MYPGNVSKLHGRDGRKNVVPCVLSVNGD-LDRGMLAYLYDSFQLTENSFTRKKNLHRKVLKLHPCLAPIKVALD-VGRG 358 (459)
T ss_dssp -HSCSCSSSSCCBSSSCBCCCEEEEEEEE-HHHHHHHHHHTTCC-------------CCCCCCCTTTCSCCEEEE-ESSC
T ss_pred -cccccCceeEccCCCeeeeeEEEEeccc-HHHHHHHHHHHHhhhccccccccccccceEEEeCcccCCceEEEE-eCCC
Confidence 22466777877777543 23345555 99999999988778766 999999999999999 5432
Q ss_pred cchhHHHHHHHHHHHHHHhhCCcEEE--EeCC-CCCCHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEcCCCCccccc
Q 047998 373 ADEKTGVLSAALSAKEVLQKSGIRVK--LDDS-DQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKV 449 (558)
Q Consensus 373 ~~~~~~~~~~a~~I~~~Lr~~Girv~--vD~r-~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~ 449 (558)
.+ +++.++|.+|++.|+++||+|+ +|++ + .++|+||++|+++||||+|+||++|+++|+|+||+|++++|.
T Consensus 359 ~~--e~~~~~A~~L~~~Lr~~GIrV~~d~Ddr~~-~siGkK~r~Ad~iGiPy~IiVG~kEle~g~VtVR~Rdtgeq~--- 432 (459)
T 3ikl_A 359 PT--LELRQVCQGLFNELLENGISVWPGYLETMQ-SSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKE--- 432 (459)
T ss_dssp CS--TTHHHHHHHHHHHHHHTSCCEECGGGSSSC-CTTHHHHHHHGGGTCSEEEEECTTSTTSSEEEEEETTTCCCC---
T ss_pred CC--HHHHHHHHHHHHHHHHCCCeEEEeecCCcC-CCHHHHHHHHHHcCCCEEEEECchhhhCCEEEEEECCCCceE---
Confidence 11 2488999999999999999999 8887 5 599999999999999999999999999999999999999987
Q ss_pred cccccChHHHHHHHHHHHHHH
Q 047998 450 FGISMEPSILEAYVKDKLDEI 470 (558)
Q Consensus 450 ~~v~v~~~el~~~i~~ll~~~ 470 (558)
.|+++++++.|+++++.-
T Consensus 433 ---~v~ldeli~~l~~~i~~~ 450 (459)
T 3ikl_A 433 ---MMHISKLKDFLIKYISSA 450 (459)
T ss_dssp ---CEETTHHHHHHHHHHHHH
T ss_pred ---EEEHHHHHHHHHHHHhhc
Confidence 789999999998877753
No 17
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=100.00 E-value=1e-48 Score=420.18 Aligned_cols=332 Identities=17% Similarity=0.215 Sum_probs=264.2
Q ss_pred cCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcC-ccccCCceEEEEecCCccccccccc
Q 047998 104 YGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASH-VEGFSPELALVTIGGGKELEEKLVV 182 (558)
Q Consensus 104 ~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh-~~~f~~Emy~~~~~g~~~l~e~l~L 182 (558)
++.++|+++|+|.++++|++|++.++++|+++||++|.||+|++.++|.++.|| |+.+.++||+|+|++|+ .++|
T Consensus 3 ~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~----~l~L 78 (421)
T 1h4v_B 3 ARAVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGR----SLTL 78 (421)
T ss_pred CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCCCC----EEee
Confidence 467899999999999999999999999999999999999999999999776677 89999999999999875 8999
Q ss_pred cCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHHHH
Q 047998 183 RPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKFAY 261 (558)
Q Consensus 183 RPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l~~ 261 (558)
||+.|++++++++++..+++++|+|+||+|+|||+|+|+.| |+|||+|+|+|+||.+.+.+|+|++.++ ++|++++.
T Consensus 79 rpd~t~~~ar~~~~~~~~~~~lP~rl~~~g~vfR~e~p~~g--R~REf~Q~g~e~~g~~~~~ad~e~i~~~~~~l~~lgl 156 (421)
T 1h4v_B 79 RPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKG--RYRQFHQVNYEALGSENPILDAEAVVLLYECLKELGL 156 (421)
T ss_pred CCcchHHHHHHHHhccccccCCCeEEEEecCeecCCCCCCC--CcccEEEccEEEECCCChhhhHHHHHHHHHHHHHcCC
Confidence 99999999999998867889999999999999999988888 9999999999999999999999998876 78887764
Q ss_pred hhCCceEEeecC-------------------------------------------Cc-hhhcc---CCC-----------
Q 047998 262 EHTAIPVIAGRK-------------------------------------------SK-VETFA---GAS----------- 283 (558)
Q Consensus 262 ~~l~ipv~~g~k-------------------------------------------~~-~ekf~---Ga~----------- 283 (558)
+. +.+..+.. .. ...+. ++.
T Consensus 157 ~~--~~i~i~~~g~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 234 (421)
T 1h4v_B 157 RR--LKVKLSSVGDPEDRARYNAYLREVLSPHREALSEDSKERLEENPMRILDSKSERDQALLKELGVRPMLDFLGEEAR 234 (421)
T ss_pred Cc--eEEEEcCCCchhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHhcchHhhhcccHHHHHHHHhcChHHHHHHhhHHHH
Confidence 31 11111100 00 00000 010
Q ss_pred --------------cceEEEEEEcCcccee--ecceEec-----CcccccccCeEEeCC----CCceeeEeeeccch-HH
Q 047998 284 --------------RTYTIEAMMGDKRALQ--AGTSHNL-----GQNFSLAFGTQFTDE----NGQRQHVWQTSWAI-ST 337 (558)
Q Consensus 284 --------------~~~~ie~~~~dgr~lq--~gti~~L-----g~~~s~~f~i~y~d~----~g~~~~v~~~s~Gi-~e 337 (558)
.++.+|..+ .|++. .|++|+. |..-+-+-|.+|++. .|+..+ ..+||+ ++
T Consensus 235 ~~l~~~~~~l~~~g~~i~~D~~l--~rg~~YYtg~vFe~~~~~~g~~~~v~~GGRYd~l~~~fgg~~~p--a~Gf~igie 310 (421)
T 1h4v_B 235 AHLKEVERHLERLSVPYELEPAL--VRGLDYYVRTAFEVHHEEIGAQSALGGGGRYDGLSELLGGPRVP--GVGFAFGVE 310 (421)
T ss_pred HHHHHHHHHHHHcCCeEEEeccc--ccchhhhcCeEEEEEecCCCCcCccccCCcHHHHHHHhCCCCCC--eEEEeecHH
Confidence 011122222 23333 4666542 222344556777542 234344 346777 99
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHc
Q 047998 338 RFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMK 417 (558)
Q Consensus 338 Rli~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~ 417 (558)
|++++|.++ | .+|+|.+|+||+|+|++++ ..++|.++++.||++ ++|++|+++ .++|+||++|++.
T Consensus 311 Rl~~~l~e~-----~-~~~~~~~p~~v~i~~~~~~------~~~~a~~l~~~Lr~~-i~v~~d~~~-~~~~~~~~~a~~~ 376 (421)
T 1h4v_B 311 RVALALEAE-----G-FGLPEEKGPDLYLIPLTEE------AVAEAFYLAEALRPR-LRAEYALAP-RKPAKGLEEALKR 376 (421)
T ss_pred HHHHHHHhc-----C-cCCCCCCCCeEEEEECChH------HHHHHHHHHHHHHhc-CEEEEecCC-CCHHHHHHHHHhC
Confidence 999999874 4 3566679999999999743 678899999999999 999999987 5999999999999
Q ss_pred CCCEEEEeCceecCCCeEEEEEcCCCCccccccccccChHHHHHHHHHHH
Q 047998 418 GIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKL 467 (558)
Q Consensus 418 GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~ll 467 (558)
|+|++|+||++|+++|+|+||+|+++++. .++++++++.|+++|
T Consensus 377 g~p~~iivG~~e~~~~~v~vk~~~~~~~~------~v~~~el~~~l~~~l 420 (421)
T 1h4v_B 377 GAAFAGFLGEDELRAGEVTLKRLATGEQV------RLSREEVPGYLLQAL 420 (421)
T ss_pred CCCEEEEECchHhhcCcEEEEECCCCCce------EECHHHHHHHHHHhh
Confidence 99999999999999999999999999886 799999999887664
No 18
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=100.00 E-value=1e-48 Score=420.32 Aligned_cols=335 Identities=15% Similarity=0.177 Sum_probs=260.8
Q ss_pred ccCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcC-ccccCCceEEEEecCCcccccccc
Q 047998 103 DYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASH-VEGFSPELALVTIGGGKELEEKLV 181 (558)
Q Consensus 103 d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh-~~~f~~Emy~~~~~g~~~l~e~l~ 181 (558)
+++.++|+++|+|.++++|++|++.++++|+++||++|.||+|++.++|.+++|| |+.+.++||+|+|++|+ .++
T Consensus 3 ~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~----~l~ 78 (423)
T 1htt_A 3 NIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGD----SLT 78 (423)
T ss_dssp CCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTTSC----EEE
T ss_pred CCCCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCCCC----EEE
Confidence 4678999999999999999999999999999999999999999999999776687 88999999999999875 899
Q ss_pred ccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHHH
Q 047998 182 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKFA 260 (558)
Q Consensus 182 LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l~ 260 (558)
|||+.|++++++++++ .+|+++|+|+||+|+|||+|+|+.| |+|||+|+|+|+||.+.+.+|+|++.++ ++|++++
T Consensus 79 Lrpd~t~~~aR~~~~~-~~~~~~P~rl~~~g~vfR~e~p~~g--R~Ref~Q~d~e~~g~~~~~ad~e~i~~~~~~l~~lg 155 (423)
T 1htt_A 79 LRPEGTAGCVRAGIEH-GLLYNQEQRLWYIGPMFRHERPQKG--RYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRALG 155 (423)
T ss_dssp ECSCSHHHHHHHHHHH-TCSTTCCEEEEEEEEEECCCCCCSS--CCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHHT
T ss_pred eCCCchHHHHHHHHhc-ccccCCCeEEEEEcCEecCCCCCCC--ccceeEEeeEEEECCCCchhhHHHHHHHHHHHHHCC
Confidence 9999999999999876 5688999999999999999988888 9999999999999999999999998877 7888887
Q ss_pred H-hhCCceEEeecCC----------chhhccCC----------------C----cc--eEEEEEE---------------
Q 047998 261 Y-EHTAIPVIAGRKS----------KVETFAGA----------------S----RT--YTIEAMM--------------- 292 (558)
Q Consensus 261 ~-~~l~ipv~~g~k~----------~~ekf~Ga----------------~----~~--~~ie~~~--------------- 292 (558)
. +.+ .+..+... ..+++.+. . .. ..+...+
T Consensus 156 l~~~~--~i~i~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~l~~~~~l~~~l~~~~~ 233 (423)
T 1htt_A 156 ISEHV--TLELNSIGSLEARANYRDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESR 233 (423)
T ss_dssp CGGGC--EEEEEECCCHHHHHHC---------------------------------------------------CCHHHH
T ss_pred CCCCc--EEEEcCCCChhhHHHHHHHHHHHHHHHHhccCHHHHHHHHhchhHhhhcccHHHHHHHhcchHHHhhhhHHHH
Confidence 6 322 12222100 00000000 0 00 0000000
Q ss_pred ------------------cC---cccee--ecceEec-----CcccccccCeEEeCC----CCceeeEeeeccch-HHHH
Q 047998 293 ------------------GD---KRALQ--AGTSHNL-----GQNFSLAFGTQFTDE----NGQRQHVWQTSWAI-STRF 339 (558)
Q Consensus 293 ------------------~d---gr~lq--~gti~~L-----g~~~s~~f~i~y~d~----~g~~~~v~~~s~Gi-~eRl 339 (558)
-| .|++. .|++|+. |...+-+-|.+|++. .|+..+ ..|||+ ++|+
T Consensus 234 ~~l~~~~~~l~~~g~~i~~D~~l~rg~~YYtg~vFe~~~~~~g~~~~v~~GGRYD~l~~~fgg~~~p--avGf~igveRl 311 (423)
T 1htt_A 234 EHFAGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATP--AVGFAMGLERL 311 (423)
T ss_dssp HHHHHHHHHHHTTTCCCEECTTCCCSSTTCCSEEEEEECC----CCEEEEEEECTTHHHHTTSCCCC--EEEEEEEHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEccccccchHHHcCceEEEEeCCCCCcCCcCCCccHHHHHHHhCCCCCC--eEEEEecHHHH
Confidence 01 12222 2444432 222233445666542 233334 456887 9999
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhC--CcEEEEeCCCCCCHHHHHHHHHHc
Q 047998 340 VGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKS--GIRVKLDDSDQRTPGWKFNFWEMK 417 (558)
Q Consensus 340 i~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~--Girv~vD~r~~~slgkk~~~ae~~ 417 (558)
+++|.++ |+ +|++.+|+||+|+|++.+ ..++|.++++.||++ |++|++|+++ .++|+||++|++.
T Consensus 312 ~~~l~e~-----~~-~~~~~~p~~v~i~~~~~~------~~~~a~~l~~~Lr~~~~Gi~v~~d~~~-~~~~~~~~~a~~~ 378 (423)
T 1htt_A 312 VLLVQAV-----NP-EFKADPVVDIYLVASGAD------TQSAAMALAERLRDELPGVKLMTNHGG-GNFKKQFARADKW 378 (423)
T ss_dssp HHHHHHH-----ST-TCCCCCSCSEEEEECSTT------HHHHHHHHHHHHHHHSTTCCEEECCSC-CCHHHHHHHHHHH
T ss_pred HHHHHhc-----Cc-CCCCCCCCcEEEEEcCHH------HHHHHHHHHHHHHcCCCCcEEEEeCCC-CCHHHHHHHHHHc
Confidence 9999875 43 456679999999999753 678899999999999 9999999987 5999999999999
Q ss_pred CCCEEEEeCceecCCCeEEEEEcCCCCccccccccccChHHHHHHHHHHH
Q 047998 418 GIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKL 467 (558)
Q Consensus 418 GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~ll 467 (558)
|+|++|+||++|+++|+|+||+|+++++. .++++++++.+++++
T Consensus 379 g~p~~iiiG~~e~~~~~v~vk~~~~~~~~------~v~~~el~~~l~~~~ 422 (423)
T 1htt_A 379 GARVAVVLGESEVANGTAVVKDLRSGEQT------AVAQDSVAAHLRTLL 422 (423)
T ss_dssp TCSEEEEECHHHHHHTEEEEEETTTCCEE------EEEHHHHHHHHHHHH
T ss_pred CCCEEEEECchhhhcCeEEEEECCCCCce------EEcHHHHHHHHHHhh
Confidence 99999999999999999999999999887 789999999887664
No 19
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=5.2e-49 Score=422.15 Aligned_cols=330 Identities=18% Similarity=0.238 Sum_probs=247.2
Q ss_pred cCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhh-cCccccCCceEEEEecCCccccccccc
Q 047998 104 YGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEA-SHVEGFSPELALVTIGGGKELEEKLVV 182 (558)
Q Consensus 104 ~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~s-gh~~~f~~Emy~~~~~g~~~l~e~l~L 182 (558)
++.++|+++|+|.|+++|++|++++++.|.++||++|.||+|++.++|.++. +|++.|.++||+|+|++|+ .++|
T Consensus 2 ~~~~~G~~~~~p~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~~g~----~~~L 77 (420)
T 1qe0_A 2 IKIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDR----SITL 77 (420)
T ss_dssp CCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHHC----CEEE
T ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcCCCC----EEEe
Confidence 3578999999999999999999999999999999999999999999996643 7999999999999998764 7999
Q ss_pred cCCCcHHHHHHHHHhHhhc-CCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHHH
Q 047998 183 RPTSETIVNHMFTQWIHSY-RDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKFA 260 (558)
Q Consensus 183 RPt~e~~i~~~~~~~i~s~-rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l~ 260 (558)
|||+|++++++++++..+| ++||+|+||+|+|||+|+++.| |+|||+|.|+|+||.+...+|+|++.++ ++|+.++
T Consensus 78 rp~~t~~~~r~~~~~~~~~~~~lP~r~~~~g~vfR~E~~~~g--R~reF~q~~~e~~~~~~~~~d~e~i~~~~~~l~~lg 155 (420)
T 1qe0_A 78 RPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKG--RYRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQSFG 155 (420)
T ss_dssp CSCSHHHHHHHHHHTTGGGCSSCSEEEEEEEEEECC---------CCEEEEEEEEEESCCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCChHHHHHHHHhccccccCCCCeEEEEecCEeecCCCcCC--CcccEEEeeEEEECCCCchhHHHHHHHHHHHHHHcC
Confidence 9999999999999999999 9999999999999999988777 9999999999999999999999988776 7787765
Q ss_pred HhhCCceEEeecCC----------chhhccC-----------------------------------CC------------
Q 047998 261 YEHTAIPVIAGRKS----------KVETFAG-----------------------------------AS------------ 283 (558)
Q Consensus 261 ~~~l~ipv~~g~k~----------~~ekf~G-----------------------------------a~------------ 283 (558)
... +.+..+... ..+++.+ +.
T Consensus 156 l~~--~~i~l~~~g~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~a~~l~~~l~~~~~~ 233 (420)
T 1qe0_A 156 LKH--LKLVINSVGDMASRKEYNEALVKHFEPVIHEFCSDCQSRLHTDPMRILDCKVDRDKEAIKTAPRITDFLNEESKA 233 (420)
T ss_dssp CCC--EEEEEEECCCHHHHHHHHHHHHHHHGGGGGGSCHHHHHTTTTCGGGGC------------CCCCGGGCCCTTHHH
T ss_pred CCc--eEEEEcccCchhhHHHHHHHHHHHHHHHHhhhCHHHHHHHHhcchhhhcccchhHHHHHhhchHHHHHhhHHHHH
Confidence 431 112222100 0000000 00
Q ss_pred -------------cceEEEEEEcCcccee--ecceEec--------CcccccccCeEEeC---CC-CceeeEeeeccch-
Q 047998 284 -------------RTYTIEAMMGDKRALQ--AGTSHNL--------GQNFSLAFGTQFTD---EN-GQRQHVWQTSWAI- 335 (558)
Q Consensus 284 -------------~~~~ie~~~~dgr~lq--~gti~~L--------g~~~s~~f~i~y~d---~~-g~~~~v~~~s~Gi- 335 (558)
..+.++. .-.|++. .|++|+. |..-+-..|.+|+. .. |+..++ .|||+
T Consensus 234 ~l~~l~~~l~~~gi~~~~d~--~l~rg~~yYtg~vfe~~~~~~~~~g~~~~i~~GgRYd~l~~~~g~~~~P~--vg~~ig 309 (420)
T 1qe0_A 234 YYEQVKAYLDDLGIPYTEDP--NLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLDGPSETG--IGFALS 309 (420)
T ss_dssp HHHHHHHHHHHHTCCCEECT--TCCCCCTTEEEEEEEEEEECTTSTTSEEEEEEEEEEESHHHHTTCCCCEE--EEEEEE
T ss_pred HHHHHHHHHHHcCCeEEECc--ccccchhhhcCeEEEEEEcCCCCCCCcCccccCccHHHHHHHhCCCCCCE--EEEEec
Confidence 0011110 1122322 3555532 21123445677765 22 343443 48888
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHH
Q 047998 336 STRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWE 415 (558)
Q Consensus 336 ~eRli~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae 415 (558)
++|++++| +++ |+.||+ ++|+||+|+|++. ...++|.+|++.||++|++|++|+++ .++|+||++|+
T Consensus 310 veRl~~~l-e~~----~~~~p~-~~p~~v~i~~~~~------~~~~~a~~l~~~Lr~~Gi~v~~d~~~-~~~~~~~~~a~ 376 (420)
T 1qe0_A 310 IERLLLAL-EEE----GIELDI-EENLDLFIVTMGD------QADRYAVKLLNHLRHNGIKADKDYLQ-RKIKGQMKQAD 376 (420)
T ss_dssp HHHHHHHH-HHT----TCCCCC-CCCCSEEEEECHH------HHHHHHHHHHHHHHTTTCCEEECCSC-CCHHHHHHHHH
T ss_pred HHHHHHHH-Hhc----CCCCCC-CCCCeEEEEEeCH------HHHHHHHHHHHHHHHCCCEEEEecCC-CCHHHHHHHHH
Confidence 99999987 543 678998 8999999999863 26789999999999999999999987 59999999999
Q ss_pred HcCCCEEEEeCceecCCCeEEEEEcCCCCccccccccccChHHHHHHHH
Q 047998 416 MKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVK 464 (558)
Q Consensus 416 ~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~ 464 (558)
+.|+|++|+||++|+++|+|+||+|+++++. .++++++++.|+
T Consensus 377 ~~g~p~~iiig~~e~~~~~v~vk~~~~~~~~------~v~~~~l~~~l~ 419 (420)
T 1qe0_A 377 RLGAKFTIVIGDQELENNKIDVKNMTTGESE------TIELDALVEYFK 419 (420)
T ss_dssp HTTCSEEEEECHHHHHHTCEEEEETTTCCEE------EECTTHHHHHHH
T ss_pred HcCCCEEEEECcchhhcCeEEEEECCCCCeE------EEcHHHHHHHHh
Confidence 9999999999999999999999999999886 789999988764
No 20
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=100.00 E-value=1.1e-47 Score=417.17 Aligned_cols=338 Identities=17% Similarity=0.207 Sum_probs=260.4
Q ss_pred ccccCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcC-ccccCCceEEEEecC-Cccccc
Q 047998 101 LADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASH-VEGFSPELALVTIGG-GKELEE 178 (558)
Q Consensus 101 l~d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh-~~~f~~Emy~~~~~g-~~~l~e 178 (558)
+..+++++|+++|+|.++.+|+.|++++++.|+++||++|.||+|++.++|.++.|| ++.|.++||.|.|.+ |+
T Consensus 29 ~~~~~~~~G~~d~lP~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g~---- 104 (467)
T 4e51_A 29 LEKLTGVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNGE---- 104 (467)
T ss_dssp -CCCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTCC----
T ss_pred hcCCCCCCCceeeCHHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCCC----
Confidence 334678999999999999999999999999999999999999999999999876698 788999999999988 74
Q ss_pred cccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHH
Q 047998 179 KLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYT 257 (558)
Q Consensus 179 ~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~ 257 (558)
.++|||++|++++++++.+..+| ++|+|+||+|+|||+|+++.| |+|||+|+|+|+||.+...+|+|++.++ ++|+
T Consensus 105 ~l~LRPd~t~~~ar~~~~~~~~~-~lP~r~~~~g~vfR~E~~~~g--R~ReF~Q~d~ei~g~~~~~adaEvi~l~~~~l~ 181 (467)
T 4e51_A 105 NLTLRPENTAAVVRAAIEHNMLY-DGPKRLWYIGPMFRHERPQRG--RYRQFHQVGVEALGFAGPDADAEIVMMCQRLWE 181 (467)
T ss_dssp EEEECSCSHHHHHHHHHHTTTTT-TSCEEEEEEEEEECCCCC-----CCSEEEEEEEEEETCCCSHHHHHHHHHHHHHHH
T ss_pred EEEeCcccHHHHHHHHHHccccc-CCCEEEEEEccEEccCCCCCC--CcCceEEEEEEEEeCCChHHHHHHHHHHHHHHH
Confidence 89999999999999999988888 699999999999999999888 9999999999999999889999998887 7899
Q ss_pred HHHHhhCCceEE-eecCC-------------------------------c---hh--------hccCCCcc---------
Q 047998 258 KFAYEHTAIPVI-AGRKS-------------------------------K---VE--------TFAGASRT--------- 285 (558)
Q Consensus 258 ~l~~~~l~ipv~-~g~k~-------------------------------~---~e--------kf~Ga~~~--------- 285 (558)
.++...+.+.+. .|... . ++ -+..++..
T Consensus 182 ~lGl~~~~i~in~~g~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~l~~~~l~~ld~k~~~~~~~l~~a~~l~~~l~~~~~ 261 (467)
T 4e51_A 182 DLGLTGIKLEINSLGLAEERAAHRVELIKYLEQHADKLDDDAQRRLYTNPLRVLDTKNPALQEIVRNAPKLIDFLGDVSR 261 (467)
T ss_dssp HHTCCCEEEEEEECCCHHHHHHHHHHHHHHHHTTGGGCCHHHHHHHTTCTHHHHTCCCGGGHHHHHTSCCGGGGCCHHHH
T ss_pred HcCCCceEEEEeCCCchhhhHHHHHHHHHHHHHHHhccCHHHHHHHHhchHHHhhccchhHHHHHhhhHHHHHhhhHHHH
Confidence 887632222221 11000 0 00 00011100
Q ss_pred ------------eEEEEEE--cCcccee--ecceEe-----cCcccccccCeEEeCC---CC-ceeeEeeeccch-HHHH
Q 047998 286 ------------YTIEAMM--GDKRALQ--AGTSHN-----LGQNFSLAFGTQFTDE---NG-QRQHVWQTSWAI-STRF 339 (558)
Q Consensus 286 ------------~~ie~~~--~dgr~lq--~gti~~-----Lg~~~s~~f~i~y~d~---~g-~~~~v~~~s~Gi-~eRl 339 (558)
+.++..+ .-.|++. .|++|+ +|..-+-..|.+|++. .| +..|+ ++|++ ++|+
T Consensus 262 ~~l~~l~~~L~~~gi~~~~d~~lvRgl~YYtg~vFe~~~~~~g~~~tI~~GGRYD~Lv~~~g~~~~Pa--vGfa~gleRl 339 (467)
T 4e51_A 262 AHFEGLQRLLKANNVPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTAA--CGWAMGIERI 339 (467)
T ss_dssp HHHHHHHHHHHHTTCCEEECTTCCCSCTTCCSEEEEEEECC----CEEEEEEECTHHHHHTTSSCCCE--EEEEEEHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEcCccccCccccCCeEEEEEECCCCCcceecCCCcHHHHHHHhCCCCCCc--eeehHHHHHH
Confidence 0011111 1135544 477774 2333345567777652 33 34444 45555 9999
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCC----CCCCHHHHHHHHH
Q 047998 340 VGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDS----DQRTPGWKFNFWE 415 (558)
Q Consensus 340 i~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r----~~~slgkk~~~ae 415 (558)
+.+|.+. | .+|. .+|.||+|+|++++ ..++|.++++.||++|++|++|.+ + .++|+||++|+
T Consensus 340 ~~~l~~~-----~-~~~~-~~p~~V~Vip~~~~------~~~~A~~ia~~LR~~Gi~ve~d~~~~~~~-~sl~kq~~~A~ 405 (467)
T 4e51_A 340 LELLKEE-----H-LVPE-QEGVDVYVVHQGDA------AREQAFIVAERLRDTGLDVILHCSADGAG-ASFKSQMKRAD 405 (467)
T ss_dssp HHHHHHT-----T-CCCC-CCCCSEEEEECSHH------HHHHHHHHHHHHHHTTCCEEECCCTTSSC-CCHHHHHHHHH
T ss_pred HHHHHhc-----C-Cccc-CCCCeEEEEEcChH------HHHHHHHHHHHHHHcCCeEEEEccccccc-CCHHHHHHHHH
Confidence 9998774 3 3454 78999999999743 678999999999999999999998 6 59999999999
Q ss_pred HcCCCEEEEeCceecCCCeEEEEEcCC-C------CccccccccccChHHHHHHHHHHH
Q 047998 416 MKGIPLRIEIGPRDVSSGSVVISRRDV-P------GKQGKVFGISMEPSILEAYVKDKL 467 (558)
Q Consensus 416 ~~GiP~~IiIG~kEl~~~~V~Ik~rdt-~------ek~~~~~~v~v~~~el~~~i~~ll 467 (558)
+.|+||+||||++|+++|+|+||+|++ + ++. .|+++++++.|++.+
T Consensus 406 ~~g~~~~iiiG~~E~~~g~V~vk~~~~~~~~~~~~~q~------~v~~~elv~~l~~~~ 458 (467)
T 4e51_A 406 ASGAAFAVIFGEDEVTNGTASVKPLRGTGDDGEKSVQQ------SVPVESLTEFLINAM 458 (467)
T ss_dssp HTTCSEEEEECHHHHHHTEEEEEEC---------CCCE------EEEGGGHHHHHHHHH
T ss_pred HcCCCEEEEECcchhhCCeEEEEECCCCCCCCCcccce------EEcHHHHHHHHHHHh
Confidence 999999999999999999999999999 7 665 789999999887765
No 21
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=3e-48 Score=418.28 Aligned_cols=330 Identities=15% Similarity=0.177 Sum_probs=260.7
Q ss_pred ccCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccc
Q 047998 103 DYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVV 182 (558)
Q Consensus 103 d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~L 182 (558)
.++.++|+++|+|.++++|++|++.++++|+++||++|.||+|++.++|.+++|| .+.++||+|+|++|+ .++|
T Consensus 5 ~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~--~~~~em~~~~D~~g~----~l~L 78 (434)
T 1wu7_A 5 QIEKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGE--ELLQQTYSFVDKGGR----EVTL 78 (434)
T ss_dssp CCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCT--TGGGGSCEEECTTSC----EEEE
T ss_pred ccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCC--ccccceEEEECCCCC----EEEe
Confidence 3567999999999999999999999999999999999999999999999877888 688999999999875 8999
Q ss_pred cCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHHHH
Q 047998 183 RPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKFAY 261 (558)
Q Consensus 183 RPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l~~ 261 (558)
|||.|++++++++++ +++ ++|+|+||+|+|||+|+|+.| |+|||+|+|+|+||.+...+|+|++.++ ++|+.++.
T Consensus 79 rPd~t~~~aR~~~~~-~~~-~lP~rl~~~g~vfR~erp~~g--R~REF~Q~d~ei~g~~~~~ad~E~i~~~~~~l~~lgl 154 (434)
T 1wu7_A 79 IPEATPSTVRMVTSR-KDL-QRPLRWYSFPKVWRYEEPQAG--RYREHYQFNADIFGSDSPEADAEVIALASSILDRLGL 154 (434)
T ss_dssp CSCSHHHHHHHHTTC-TTC-CSSEEEEECCEEECCCCSCSS--CCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCChHHHHHHHHhc-CCC-CCCeEEEEEcCeecCCCCCCC--CccceEEeeEEEEcCCChHhhHHHHHHHHHHHHHcCC
Confidence 999999999999888 777 899999999999999988888 9999999999999999999999998776 78887765
Q ss_pred hhCCceEEeec------------CCc---------------hh--------------------hc---cCC---------
Q 047998 262 EHTAIPVIAGR------------KSK---------------VE--------------------TF---AGA--------- 282 (558)
Q Consensus 262 ~~l~ipv~~g~------------k~~---------------~e--------------------kf---~Ga--------- 282 (558)
+. .+.+..++ ... ++ .| .|.
T Consensus 155 ~~-~~~i~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 233 (434)
T 1wu7_A 155 QD-IYEIRINSRKIMEEIIGGMTSSDPFSVFSIIDRYHKISREEFVDQLRSAGIGEDGVSMIADLCSGTRGIDEMARITG 233 (434)
T ss_dssp TT-SEEEEEEEHHHHHHHHHTTCSSCHHHHHHHHHTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHHSCBCHHHHHHHTT
T ss_pred CC-ceEEEECChhhHHHHHHHhCcHhHHHHHHHHHHHhccchHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHh
Confidence 31 01222111 111 00 00 011
Q ss_pred --Cc------------------ceEEEEEEcCcccee--ecceEec----CcccccccCeEEeCCC----CceeeEeeec
Q 047998 283 --SR------------------TYTIEAMMGDKRALQ--AGTSHNL----GQNFSLAFGTQFTDEN----GQRQHVWQTS 332 (558)
Q Consensus 283 --~~------------------~~~ie~~~~dgr~lq--~gti~~L----g~~~s~~f~i~y~d~~----g~~~~v~~~s 332 (558)
.. ++.+|..+ .|+++ .|++|+. |...+-+-|.+|++.- |+..+ ..|
T Consensus 234 ~~~~~~~~l~~~~~~l~~~g~~~i~~D~~l--~rgldYYtg~vFe~~~~~g~~~~v~~GGRYD~li~~fgg~~~p--a~G 309 (434)
T 1wu7_A 234 KSSEEIARMAAVEDLLASYGVKNVRYDFSI--VRGLSYYTGIVFEAYDRSGQFRAILGGGRYDNLASLMSGESVP--AVG 309 (434)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCCCEECTTC--CTTTTTCSSEEEEEEETTSSCSCSSEEEECTTHHHHHHSCCCC--EEE
T ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEECCCc--ccCccccCCeEEEEEECCCCcCeeeecccHHHHHHHhCCCCCC--eEE
Confidence 00 01111111 22222 3555542 1223334566775431 33333 456
Q ss_pred cch-HHHHHHHHHHHhCCCCCCCC-CCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHH
Q 047998 333 WAI-STRFVGGIIMTHGDDTGLML-PPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWK 410 (558)
Q Consensus 333 ~Gi-~eRli~~lie~~~D~~Gl~l-P~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk 410 (558)
||+ ++|++++|+++ | .| |+ +|+||+|+|++++ ..++|.++++.||++|++|++|+++ .++|+|
T Consensus 310 f~igveRl~~~l~e~-----~-~~~p~--~p~~v~v~~~~~~------~~~~a~~l~~~Lr~~Gi~v~~d~~~-~~~~~~ 374 (434)
T 1wu7_A 310 FGMGDAVISLLLKRE-----N-VQIPR--EKKSVYICRVGKI------NSSIMNEYSRKLRERGMNVTVEIME-RGLSAQ 374 (434)
T ss_dssp EEEEHHHHHHHHHHT-----T-CCCCC--SSCEEEEEEESSC------CHHHHHHHHHHHHTTTCEEEECCSC-CCHHHH
T ss_pred EEEcHHHHHHHHHhc-----C-CccCC--CCCcEEEEEcChH------HHHHHHHHHHHHHHCCCeEEEecCC-CCHHHH
Confidence 888 99999999875 3 56 76 7999999999754 4688999999999999999999987 599999
Q ss_pred HHHHHHcCCCEEEEeCceecCCCeEEEEEcCCCCccccccccccChHHHHHHHHHHHH
Q 047998 411 FNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLD 468 (558)
Q Consensus 411 ~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~ll~ 468 (558)
|++|++.|+|++|+||++|+++|+|+||+|+++++. .++++++++.++++|.
T Consensus 375 ~~~a~~~g~~~~iiiG~~e~~~g~v~vk~~~~~~~~------~v~~~el~~~l~~~~~ 426 (434)
T 1wu7_A 375 LKYASAIGADFAVIFGERDLERGVVTIRNMYTGSQE------NVGLDSVVEHLISQAT 426 (434)
T ss_dssp HHHHHHTTCSEEEEEEHHHHHTTEEEEEETTTCCEE------EEEGGGHHHHHHHCCC
T ss_pred HHHHHHCCCCEEEEECchhhhcCeEEEEECCCCCeE------EEcHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999876 7899999998877654
No 22
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=100.00 E-value=1.4e-45 Score=400.51 Aligned_cols=338 Identities=15% Similarity=0.196 Sum_probs=259.1
Q ss_pred HHHhccccccCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCc-eEEEEec--
Q 047998 95 VISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPE-LALVTIG-- 171 (558)
Q Consensus 95 ~~~~a~l~d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~E-my~~~~~-- 171 (558)
+|.+.+.+++++++|++||+|.++.+|+.|++.+++.|+++||++|.||+|++.++|.++ | +. .++ ||.|.|+
T Consensus 3 ~~~~~~~~~~~~p~G~~D~lP~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~-G--~~-~ke~m~~~~d~~~ 78 (465)
T 3net_A 3 AMAKNDKINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAK-G--NQ-GDNIIYGLEPILP 78 (465)
T ss_dssp ------CCCCSCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGG-G--CC---CBEEEEEEEC-
T ss_pred cccCCccccccCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhcc-C--CC-CccceEEEecccc
Confidence 577888999999999999999999999999999999999999999999999999999776 6 33 477 9999998
Q ss_pred -C------------CccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceee
Q 047998 172 -G------------GKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTA 238 (558)
Q Consensus 172 -g------------~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~ 238 (558)
| | +.++|||+.|++++++++.+. .+..+|+|+||+|+|||+|+|++| |+|||+|+|+|+|
T Consensus 79 ~g~~~~~~~~~~~~g----~~l~LRpd~T~~~aR~~~~~~-~~~~~p~r~~y~g~vfR~e~~~~g--r~Ref~Q~g~ei~ 151 (465)
T 3net_A 79 PNRQAEKDKSGDTGS----EARALKFDQTVPLAAYIARHL-NDLTFPFARYQMDVVFRGERAKDG--RFRQFRQCDIDVV 151 (465)
T ss_dssp -------------------CCEEECSCSHHHHHHHHHHHG-GGSCSSEEEEECCEEECBC--------CCEEEEEEEEEE
T ss_pred cccccccccccCCCC----CEEEeCCCChHHHHHHHHhcc-cccCCCeEEEEeccEEecCCCCCC--CcceeEEeeEEEE
Confidence 3 4 489999999999999998875 466899999999999999999999 9999999999999
Q ss_pred eCChHHH--HHHHHHHH-HHHHHHHHhhCCceEE-----------ee-------------cC-Cc--h------------
Q 047998 239 HATPEEA--EKEAMQMI-DIYTKFAYEHTAIPVI-----------AG-------------RK-SK--V------------ 276 (558)
Q Consensus 239 ~~~~~~a--~~e~~~il-~~y~~l~~~~l~ipv~-----------~g-------------~k-~~--~------------ 276 (558)
|.....+ |+|++.++ ++++.++...+.+.+. .| ++ .+ +
T Consensus 152 G~~~~~a~~DaEvi~l~~~~l~~lgl~~~~i~in~~~~l~~~l~~~g~~~~~~~~~~~~ld~~~~~~~~~~~~~l~~~~l 231 (465)
T 3net_A 152 GREKLSLLYDAQMPAIITEIFEAVNIGDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGI 231 (465)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHHTCSCEEEEEEEHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTC
T ss_pred CCCCccchhhHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHhccccCHHHHHHHHHhcCC
Confidence 9988899 99999887 8898887531111110 00 00 00 0
Q ss_pred -----h------hccCCC-------------------------------------cc----eEEEEEEcCcccee--ecc
Q 047998 277 -----E------TFAGAS-------------------------------------RT----YTIEAMMGDKRALQ--AGT 302 (558)
Q Consensus 277 -----e------kf~Ga~-------------------------------------~~----~~ie~~~~dgr~lq--~gt 302 (558)
+ .+.|.. .. +.++. .-.|+++ .|+
T Consensus 232 ~~~~~~~l~~l~~~~g~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~~~~~D~--~lvrgldYYtG~ 309 (465)
T 3net_A 232 NPEQTQKIIDFVKIDGSVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDL--AIARGLNYYTGT 309 (465)
T ss_dssp CHHHHHHHHHHHTCCSCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHTTCCGGGEEECT--TCCCCSSSEEEE
T ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHhcccccCceEEEcc--CccCCCcccCce
Confidence 0 011110 01 11221 1256655 588
Q ss_pred eEec-----CcccccccCeEEeCCC----CceeeEeeeccch-HHHHHHHHHHHhCCCCCCCCCC-CCCCCcEEEEeCCC
Q 047998 303 SHNL-----GQNFSLAFGTQFTDEN----GQRQHVWQTSWAI-STRFVGGIIMTHGDDTGLMLPP-RIAPIQVVIVPIWK 371 (558)
Q Consensus 303 i~~L-----g~~~s~~f~i~y~d~~----g~~~~v~~~s~Gi-~eRli~~lie~~~D~~Gl~lP~-~lAP~qV~Iipi~~ 371 (558)
+|+. |..-+-+-|++|++.- |.. ++.++||+ ++|++++|.++ | .||. +.+|.||+|+|+++
T Consensus 310 vFe~~~~~~~~~~~i~~GGRYD~L~~~f~g~~--~pavGfaiGieRli~~L~e~-----g-~~p~~~~~p~~V~Vi~~~~ 381 (465)
T 3net_A 310 VYETTLIGHEALGSICSGGRYEELVGTFIGEK--MPGVGISIGLTRLISRLLKA-----G-ILNTLPPTPAQVVVVNMQD 381 (465)
T ss_dssp EEEEEETTCGGGCCSSEEEEESSSSGGGTCSC--CCEEEEEEEHHHHHHHHHHT-----T-SSCCCCSCSCCEEECCSCG
T ss_pred EEEEEECCCCccceecccccHHHHhhhhcCCC--CceeeeeccHHHHHHHHHHc-----C-CCCCcCCCCCeEEEEEcCH
Confidence 8863 1123567789997642 443 66778888 99999999875 4 4887 89999999999864
Q ss_pred CcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEEEEeCceecCCC-eEEEEEcCCCCcccccc
Q 047998 372 KADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSG-SVVISRRDVPGKQGKVF 450 (558)
Q Consensus 372 ~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~-~V~Ik~rdt~ek~~~~~ 450 (558)
+ ...+|.++++.||++|++|++|+++ .++|+||++|++.|+|++|+||++ +++| +|+||+|++++|.
T Consensus 382 ~------~~~~A~~la~~LR~~Gi~ve~d~~~-~sl~~q~k~A~~~g~p~~iiiG~~-~~~g~~V~vk~~~t~eq~---- 449 (465)
T 3net_A 382 E------LMPTYLKVSQQLRQAGLNVITNFEK-RQLGKQFQAADKQGIRFCVIIGAD-EAAAQKSSLKDLQSGEQV---- 449 (465)
T ss_dssp G------GHHHHHHHHHHHHHTTCCEEECCSC-CCHHHHHHHHHHHTCCEEEECCHH-HHHTTCCEEEETTTTEEE----
T ss_pred H------HHHHHHHHHHHHHHCCCEEEEEeCC-CCHHHHHHHHHHcCCCEEEEECch-hhcCCEEEEEECCCCceE----
Confidence 3 5789999999999999999999997 599999999999999999999999 9999 9999999999887
Q ss_pred ccccChHHHHHHHHHHH
Q 047998 451 GISMEPSILEAYVKDKL 467 (558)
Q Consensus 451 ~v~v~~~el~~~i~~ll 467 (558)
.|+++++++.|+++|
T Consensus 450 --~v~~~el~~~l~~~l 464 (465)
T 3net_A 450 --EVALADLAEEIKRRL 464 (465)
T ss_dssp --ECC-CCHHHHHHHTC
T ss_pred --EeeHHHHHHHHHHhc
Confidence 789999998887643
No 23
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=100.00 E-value=3.7e-45 Score=402.40 Aligned_cols=337 Identities=19% Similarity=0.180 Sum_probs=249.8
Q ss_pred ccCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccc
Q 047998 103 DYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVV 182 (558)
Q Consensus 103 d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~L 182 (558)
-.+.++||+||+|.++.+|+.|++.+++.|+++||++|.||+|++.++|.++.|+. .++||.|+|++|+ .++|
T Consensus 66 ~l~~P~G~~D~lP~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~---~~~my~f~D~~g~----~l~L 138 (517)
T 4g85_A 66 VLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGED---SKLIYDLKDQGGE----LLSL 138 (517)
T ss_dssp CCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC---------CSCBBCCTTSC----CEEE
T ss_pred eeeCCCCCCccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcC---cceeEEEECCCCC----EEEe
Confidence 35789999999999999999999999999999999999999999999997766643 5789999999885 8999
Q ss_pred cCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC--CCCccccceEEEecceeeeC-ChHHHHHHHHHHH-HHHHH
Q 047998 183 RPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR--TKPFVRTLEFLWQEGHTAHA-TPEEAEKEAMQMI-DIYTK 258 (558)
Q Consensus 183 RPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~--~rGllR~REF~q~d~h~~~~-~~~~a~~e~~~il-~~y~~ 258 (558)
||+.|++++++++. ++.+|+|+||+|+|||+|+| ++| |+|||+|+|+|+||. ++..+|+|++.++ ++++.
T Consensus 139 RPd~T~~~aR~~~~----~~~~p~k~yyig~vfR~Erp~~~~G--R~ReF~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~ 212 (517)
T 4g85_A 139 RYDLTVPFARYLAM----NKLTNIKRYHIAKVYRRDNPAMTRG--RYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSS 212 (517)
T ss_dssp CSCSHHHHHHHHHH----TTCSCEEEEEEEEEECCCC---------CCEEEEEEEEEESCCCTTHHHHHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHh----CCCCCceeEEEeceEeccCcccccC--ccceeeeeceeccCCccchHHHHHHHHHHHHHHHh
Confidence 99999999987754 56789999999999999998 668 999999999999985 4567899998876 78888
Q ss_pred HHHhhCCceEEe-----------e----------------cCCchh------------------h---c---cCCCc---
Q 047998 259 FAYEHTAIPVIA-----------G----------------RKSKVE------------------T---F---AGASR--- 284 (558)
Q Consensus 259 l~~~~l~ipv~~-----------g----------------~k~~~e------------------k---f---~Ga~~--- 284 (558)
++...+.+.+.. | ++..++ + + .|...
T Consensus 213 lgl~~~~i~in~~~~l~~~~~~~~~~~~~~~~~~~~ld~ldk~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 292 (517)
T 4g85_A 213 LQIGDFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVE 292 (517)
T ss_dssp HCCCCEEEEEEEHHHHHHHHHHHTCCHHHHHHHHHHHHTTTTSCHHHHHHHHHHHTCCCHHHHHHHHHHHHCCBSHHHHH
T ss_pred hcCCcccccccchhhHHHHHHhhcchHHHHHHHHHHHhhhcchhHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHH
Confidence 765321111100 0 000000 0 0 00000
Q ss_pred ---------------------------------ceEEEEEEcCcccee--ecceEecC-----cc--------cccccCe
Q 047998 285 ---------------------------------TYTIEAMMGDKRALQ--AGTSHNLG-----QN--------FSLAFGT 316 (558)
Q Consensus 285 ---------------------------------~~~ie~~~~dgr~lq--~gti~~Lg-----~~--------~s~~f~i 316 (558)
...+.+.....|+++ +|++|+.- .+ -+-+-|.
T Consensus 293 ~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~d~~lvrgldYYtG~vFE~~~~~~~~~~~~~~~~~~~i~~GG 372 (517)
T 4g85_A 293 QLLQDPKLSQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAGG 372 (517)
T ss_dssp HHHHCHHHHTCHHHHHHHHHHHHHHHHHHHHTCGGGEEECTTCCCCTTTCSSEEEEEEEC-------------CCSEEEE
T ss_pred HHHhcccccccHHHHHHHHHHHHHHHHHHhhCCCcceeeccccccCCcccCCeEEEEEECCcccccccCCcccceecCCC
Confidence 001111112245554 58888531 11 1345577
Q ss_pred EEeC------CCCceeeEeeeccchHHHHHHHHHHHhCCCCCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHH
Q 047998 317 QFTD------ENGQRQHVWQTSWAISTRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVL 390 (558)
Q Consensus 317 ~y~d------~~g~~~~v~~~s~Gi~eRli~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~L 390 (558)
+|++ ..|...+..+.++| ++|++.+|.+... ++.+|.+.+|++|+|++++++ ..++|.+|++.|
T Consensus 373 RYD~Lv~~f~~~G~~~pavGfa~g-ierl~~~le~~~~---~~~~~~~~~~~~V~v~~~~~~------~~~~a~~l~~~L 442 (517)
T 4g85_A 373 RYDGLVGMFDPKGRKVPCVGLSIG-VERIFSIVEQRLE---ALEEKIRTTETQVLVASAQKK------LLEERLKLVSEL 442 (517)
T ss_dssp ECHHHHHTTSSSCCCCCEEEEEEC-HHHHHHHHHHHHH---HTTCCCCSCCCCEEEEESSSS------CHHHHHHHHHHH
T ss_pred chhHHHHHhccCCCCCCcccccch-HHHHHHHHHHhcc---ccCccccCCCCEEEEEeCCHH------HHHHHHHHHHHH
Confidence 8864 34665554444444 8999988765431 345566678899999998765 578899999999
Q ss_pred hhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEcCCCCccccccccccChHHHHHHHHHHHH
Q 047998 391 QKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLD 468 (558)
Q Consensus 391 r~~Girv~vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~ll~ 468 (558)
|++||+|++|+..+.++++||++|++.|+||+||||++|+++|+|+||++.+|+|. .|++++|++.|++.+.
T Consensus 443 r~~Gi~ve~~~~~~~~l~~q~k~A~~~g~~~~viiG~~E~~~g~v~vK~l~tgeq~------~v~~~elv~~lk~~l~ 514 (517)
T 4g85_A 443 WDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEV------DVRREDLVEEIKRRTG 514 (517)
T ss_dssp HHTTCCEEECSSSSCCHHHHHHHHHHHCCCEEEEECHHHHHTTEEEEEETTTCCEE------EEEHHHHHHHHHHHCC
T ss_pred HHCCCcEEEEeCCCCCHHHHHHHHHHCCCCEEEEECChhHhCCEEEEEECCCCCeE------EeeHHHHHHHHHHHhc
Confidence 99999999987544589999999999999999999999999999999999999887 7999999999987764
No 24
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.2e-44 Score=392.97 Aligned_cols=339 Identities=18% Similarity=0.186 Sum_probs=249.5
Q ss_pred HhccccccCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccc
Q 047998 97 SNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKEL 176 (558)
Q Consensus 97 ~~a~l~d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l 176 (558)
.+++++ .+.++||+||+|.++.+|++|++.+++.|+++||++|.||+|++.++|.+..|+ ..++||.|+|++|+
T Consensus 8 ~~~~~~-~~~p~G~~D~lP~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~---~~~~~y~f~D~~g~-- 81 (464)
T 4g84_A 8 LRRQFV-LKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGE---DSKLIYDLKDQGGE-- 81 (464)
T ss_dssp -----C-CCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC-------CCCBBCCCSSC--
T ss_pred Hhhccc-eeCCCCcCccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCc---CcceeEEEECCCCC--
Confidence 344443 578999999999999999999999999999999999999999999999776664 35889999999885
Q ss_pred cccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeC-ChHHHHHHHHHHH-H
Q 047998 177 EEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHA-TPEEAEKEAMQMI-D 254 (558)
Q Consensus 177 ~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~-~~~~a~~e~~~il-~ 254 (558)
.++|||+.|++++++++. ++.+|+|+||+|+|||+|+|+.|..|+|||+|.|+|+||. ++..+|+|++.++ +
T Consensus 82 --~l~LRPd~T~~~aR~~~~----~~~~p~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~~~~~~aDaEvi~l~~~ 155 (464)
T 4g84_A 82 --LLSLRYDLTVPFARYLAM----NKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCE 155 (464)
T ss_dssp --CEEECSCSHHHHHHHHHH----TTCSCEEEEEEEEEECCCC------CCSEEEEEEEEEESCCSTTHHHHHHHHHHHH
T ss_pred --EEEeCCcCcHHHHHHHHh----cCCCCceeEEEecceeccCCccccCccceeeecceeccCCccchhhHHHHHHHHHH
Confidence 899999999999987754 5678999999999999998843333999999999999985 4567899998876 7
Q ss_pred HHHHHHHhhCCceEEe-----------e----------------cCCchh------------------h---c-------
Q 047998 255 IYTKFAYEHTAIPVIA-----------G----------------RKSKVE------------------T---F------- 279 (558)
Q Consensus 255 ~y~~l~~~~l~ipv~~-----------g----------------~k~~~e------------------k---f------- 279 (558)
+++.++...+.+.+.. | ++...+ + +
T Consensus 156 ~l~~lgl~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~ 235 (464)
T 4g84_A 156 ILSSLQIGDFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGV 235 (464)
T ss_dssp HHHHHTCCCEEEEEEEHHHHHHHHHHHTCCHHHHHHHHHHHGGGGTSCHHHHHHHHHHTTCCCHHHHHHHHHHHTCEESH
T ss_pred HHHHhCCCCcceeecchhhHHHHHHhhcCcHHHHHHHHHHHHHhchhhHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCc
Confidence 8888765321111100 0 000000 0 0
Q ss_pred ----------------------------------cCCCcceEEEEEEcCcccee--ecceEecC-----cc--------c
Q 047998 280 ----------------------------------AGASRTYTIEAMMGDKRALQ--AGTSHNLG-----QN--------F 310 (558)
Q Consensus 280 ----------------------------------~Ga~~~~~ie~~~~dgr~lq--~gti~~Lg-----~~--------~ 310 (558)
.|....+.++ ....|+++ +|++|+.- .+ -
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~d--~~lvrgldYYtG~vFe~~~~~~~~~~~~~~~~~~ 313 (464)
T 4g84_A 236 SLVEQLLQDPKLSQNKQALEGLGDLKLLFEYLTLFGIDDKISFD--LSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVG 313 (464)
T ss_dssp HHHHHHTTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCGGGEEEE--TTCCCCTTTCSSEEEEEEEEECC-------EEEE
T ss_pred hHHHHHHhcccccccHHHHHHHHHHHHHHhHHHhhCCCcceeec--ccccCCCcCcCCeEEEEEECCcccccccCCcccc
Confidence 0000111122 22245554 58887531 11 1
Q ss_pred ccccCeEEeCC------CCceeeEeeeccch-HHHHHHHHHHHhCCCCCCCCCC--CCCCCcEEEEeCCCCcchhHHHHH
Q 047998 311 SLAFGTQFTDE------NGQRQHVWQTSWAI-STRFVGGIIMTHGDDTGLMLPP--RIAPIQVVIVPIWKKADEKTGVLS 381 (558)
Q Consensus 311 s~~f~i~y~d~------~g~~~~v~~~s~Gi-~eRli~~lie~~~D~~Gl~lP~--~lAP~qV~Iipi~~~~~~~~~~~~ 381 (558)
+-+-|.+|++. .|+..+ ..+||+ ++|++.+|.++. ..+|+ +..+.+|+|++++++ ...
T Consensus 314 ~i~~GGRYD~L~~~~~~~g~~~p--avGfaigieRl~~~l~~~~-----~~~~~~~~~~~~~v~v~~~~~~------~~~ 380 (464)
T 4g84_A 314 SVAAGGRYDGLVGMFDPKGRKVP--CVGLSIGVERIFSIVEQRL-----EALEEKIRTTETQVLVASAQKK------LLE 380 (464)
T ss_dssp EEEEEEECCSTGGGTSTTCCCCC--EEEEEECHHHHHHHHHHHH-----HTTTCCCCSCCCCEEEECSSSS------CHH
T ss_pred eeccCCchhHHHHHhccCCCCCC--CccccccHHHHHHHHHHhc-----cccCcccccccceEEEEeCCHH------HHH
Confidence 34557788753 355444 556666 999999887653 24443 345788999998764 578
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEcCCCCccccccccccChHHHHH
Q 047998 382 AALSAKEVLQKSGIRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEA 461 (558)
Q Consensus 382 ~a~~I~~~Lr~~Girv~vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~ 461 (558)
+|.+|++.||++||+|++|+..+.++++||++|++.|+||+||||++|+++|+|+||+|.+|+|. .|++++|++
T Consensus 381 ~a~~l~~~Lr~~Gi~ve~~~~~~~~l~~q~k~A~~~g~~~~viiG~~E~~~g~v~vK~l~tgeq~------~v~~~elv~ 454 (464)
T 4g84_A 381 ERLKLVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEV------DVRREDLVE 454 (464)
T ss_dssp HHHHHHHHHHHTTCCEECCSCSSCCHHHHHHHHHHHTCCEEEECCHHHHHHTEEEEEETTTCCEE------EEEGGGHHH
T ss_pred HHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHHCCCCEEEEECchhhhCCEEEEEECCCCCeE------EeeHHHHHH
Confidence 89999999999999999987544589999999999999999999999999999999999999987 799999999
Q ss_pred HHHHHHH
Q 047998 462 YVKDKLD 468 (558)
Q Consensus 462 ~i~~ll~ 468 (558)
.|++.+.
T Consensus 455 ~lk~~l~ 461 (464)
T 4g84_A 455 EIKRRTG 461 (464)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9988764
No 25
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=100.00 E-value=3.2e-45 Score=394.56 Aligned_cols=264 Identities=21% Similarity=0.177 Sum_probs=243.6
Q ss_pred HHHHHHHHhccccccCC-----CCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCc
Q 047998 90 AWYLDVISNAELADYGP-----VRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPE 164 (558)
Q Consensus 90 ~wy~~~~~~a~l~d~~~-----vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~E 164 (558)
.||.+++++++++|+.. .+|+++|+|.|+++|++|++++++.+.++||++|.||+|++.++|.+ +||++.|.++
T Consensus 160 ~~H~~lg~~l~l~d~~~~~k~~g~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~-sG~~~~f~~e 238 (455)
T 2dq0_A 160 KLHVDLLEILGGADFARAAKVSGSRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEG-STSFEDFEDV 238 (455)
T ss_dssp CCHHHHHHHTTCEESHHHHHHTCTTCCEEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHT-TSCTTHHHHT
T ss_pred CCHHHHHhcCCcEEecccccccCCCeEEECCHHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHh-cCCCCCChHh
Confidence 68999999999999863 47999999999999999999999999999999999999999999954 7999999999
Q ss_pred eEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC-----CCCccccceEEEecceeee
Q 047998 165 LALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-----TKPFVRTLEFLWQEGHTAH 239 (558)
Q Consensus 165 my~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~-----~rGllR~REF~q~d~h~~~ 239 (558)
||++++ +.++||||+|++++.+|++++.||++||+|++|+|+|||+|.+ ++||+|+|||+|.|+|+|
T Consensus 239 my~~~d-------~~l~LrPt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~f- 310 (455)
T 2dq0_A 239 IYKVED-------EDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVY- 310 (455)
T ss_dssp CCBBTT-------SSCEECSSTHHHHHHTTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEE-
T ss_pred hCeecC-------CcEEEcCcCcHHHHHHHHhCccCchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEEe-
Confidence 999863 3799999999999999999999999999999999999999997 468999999999999987
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhhCCceEEeecCCchhhccCCCcceEEEEEEcC-ccceeecceEecCcccccccCeEE
Q 047998 240 ATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD-KRALQAGTSHNLGQNFSLAFGTQF 318 (558)
Q Consensus 240 ~~~~~a~~e~~~il~~y~~l~~~~l~ipv~~g~k~~~ekf~Ga~~~~~ie~~~~d-gr~lq~gti~~Lg~~~s~~f~i~y 318 (558)
++++++++++..+++.+..++.. |++|+.....+..+.+.|+..+|.+|++++. ++..++++++++|+.++++|+++|
T Consensus 311 ~~pe~s~~~~~e~l~~~~~il~~-LGL~yrv~~~~~gdlg~~a~~~~diE~w~p~~~~~~ei~s~s~c~DfqarR~~iry 389 (455)
T 2dq0_A 311 SRPEESWEWHEKIIRNAEELFQE-LEIPYRVVNICTGDLGYVAAKKYDIEAWMPGQGKFREVVSASNCTDWQARRLNIRF 389 (455)
T ss_dssp ECTTTHHHHHHHHHHHHHHHHHH-TTCCEEEEECCGGGSCSSCSEEEEEEEEETTTTEEEEEEEEEECTTTTHHHHTEEE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH-cCCceEEEECCCccccChhhceeeeeeecCcCCcccEEEeeccchhhHhhccCcEE
Confidence 77899999999999999999876 8999887766667888899999999999974 788899999999999999999999
Q ss_pred eCC-CCceeeEeee-ccch-HHHHHHHHHHHhCCCCC-CCCCCCCCCCc
Q 047998 319 TDE-NGQRQHVWQT-SWAI-STRFVGGIIMTHGDDTG-LMLPPRIAPIQ 363 (558)
Q Consensus 319 ~d~-~g~~~~v~~~-s~Gi-~eRli~~lie~~~D~~G-l~lP~~lAP~q 363 (558)
.+. +|+..++|+. |+|+ ++|+|++|+|+|+|+.| +.||+|++|+|
T Consensus 390 ~~~~~g~~~~vHtlngs~lav~R~i~allE~~~~~dG~i~iP~~LaP~~ 438 (455)
T 2dq0_A 390 RDRTDEKPRYVHTLNSTAIATSRAIVAILENHQEEDGTVRIPKVLWKYT 438 (455)
T ss_dssp ESSTTSCCEECEEEEEEEEEHHHHHHHHHHHSBCTTSCEECCGGGHHHH
T ss_pred ecCCCCcEEEEEEEechHhHHHHHHHHHHHHccCCCCcEeCChhhCCcc
Confidence 998 8888899975 7776 99999999999999999 89999999999
No 26
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=100.00 E-value=1.8e-43 Score=383.25 Aligned_cols=279 Identities=16% Similarity=0.172 Sum_probs=247.6
Q ss_pred CCCcchH-HHHHHHHHhccccccCC-----CCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhc
Q 047998 83 PRSQDFN-AWYLDVISNAELADYGP-----VRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEAS 156 (558)
Q Consensus 83 ~~~~~~~-~wy~~~~~~a~l~d~~~-----vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sg 156 (558)
++.-+|. .+|.++++++|++|+.. .+|+++|+|.|++++++|++++++.+.++||++|.||.|++.++| ..+|
T Consensus 178 ~~~~~f~~~dH~~Lg~~lgl~d~~~~~k~~G~g~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~-~~sG 256 (501)
T 1wle_A 178 KPAFSFQPRGHLEIAEKLDIIRQKRLSHVSGHRSYYLRGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVF-EGCG 256 (501)
T ss_dssp CCCCSSCCCCHHHHHHHHTCEECTTCTTTTCTTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHH-HHHT
T ss_pred CCCCCCCCCCHHHHHhhcCceecccccccccCceEEEcChHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHH-Hhhc
Confidence 3444553 78999999999999864 379999999999999999999999999999999999999999998 6699
Q ss_pred CccccCC-ceEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC----CCCccccceEE
Q 047998 157 HVEGFSP-ELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR----TKPFVRTLEFL 231 (558)
Q Consensus 157 h~~~f~~-Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~----~rGllR~REF~ 231 (558)
|+..|.+ +||++++.++ ++++|+||+|++++.+|++++.||++||++++|+++|||+|.+ ++||+|+|||.
T Consensus 257 ~~~~f~e~emf~v~~~~~----~~l~L~PTaE~~~~~l~~~~i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~ 332 (501)
T 1wle_A 257 MTPNAKPSQIYNIDPSRF----EDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFT 332 (501)
T ss_dssp CCSSSSSCSSCBBCTTTS----SSCEECSSHHHHHHHHHTTEEEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEE
T ss_pred CCCccCccccEEEecCCC----CeEEECCcCcHHHHHHHhhccCCcccCCeeEEeccCcccCCCCCCCCCcCceeeeeee
Confidence 9999998 9999987654 4799999999999999999999999999999999999999987 78999999999
Q ss_pred EecceeeeCCh-HHHHHHHHHHHHHHHHHHHhhCCceEEeecCCchhhccCCCcceEEEEEEcCc-cceeecceEecCcc
Q 047998 232 WQEGHTAHATP-EEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGDK-RALQAGTSHNLGQN 309 (558)
Q Consensus 232 q~d~h~~~~~~-~~a~~e~~~il~~y~~l~~~~l~ipv~~g~k~~~ekf~Ga~~~~~ie~~~~dg-r~lq~gti~~Lg~~ 309 (558)
|.|+|+|+.+. +++++++..|++.|.+++.. |++|+.....+..+...++..+|++|++++.. ...+++++.+.++.
T Consensus 333 kvE~~~f~~pe~e~s~~~~e~~l~~~~~il~~-LgLpyrvv~l~tgdlg~~a~~~~DiE~w~p~~~~~~Ei~s~sn~~Df 411 (501)
T 1wle_A 333 KVEMFGVTGPGLEQSSELLEEFLSLQMEILTE-LGLHFRVLDMPTQELGLPAYRKFDIEAWMPGRGRFGEVTSASNCTDF 411 (501)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHHHHHHHHHHH-TTCCEEEEECCGGGSTTTCSEEEEEEEEETTTTEEEEEEEEEECTTH
T ss_pred eeeEEEEeCCcHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEEccCcccCCchhheecHhhcccccccceeEEeccccccc
Confidence 99999995554 79999999999999999876 89998776555556666778899999999874 45678888889988
Q ss_pred cccccCeEEeCCCCceeeEee-eccch-HHHHHHHHHHHhCCCCC-CCCCCCCCCCc-EEEE
Q 047998 310 FSLAFGTQFTDENGQRQHVWQ-TSWAI-STRFVGGIIMTHGDDTG-LMLPPRIAPIQ-VVIV 367 (558)
Q Consensus 310 ~s~~f~i~y~d~~g~~~~v~~-~s~Gi-~eRli~~lie~~~D~~G-l~lP~~lAP~q-V~Ii 367 (558)
++++|+++|.+.+|+.+++|+ .++|+ ++|+|++|+|+|+++.| ++||++++|++ +-+|
T Consensus 412 qarR~~iry~~~~gk~~~vHtlngSglav~R~l~alLEn~q~~dG~i~iP~~L~Py~g~~~i 473 (501)
T 1wle_A 412 QSRRLHIMFQTEAGELQFAHTVNATGCAVPRLLIALLESYQQKDGSVLVPPALQPYLGTDRI 473 (501)
T ss_dssp HHHHHTCEEECSSSCEEECEEEEEEEEEHHHHHHHHHHHHBCTTSCEECCGGGHHHHSSSEE
T ss_pred hhhhcCcEEECCCCCEEEEEEECCccchHHHHHHHHHHhCCCCCCCEeCChhhcCccCcccc
Confidence 999999999998898889997 55776 99999999999999999 89999999998 5455
No 27
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=100.00 E-value=3.5e-43 Score=380.19 Aligned_cols=322 Identities=16% Similarity=0.158 Sum_probs=244.7
Q ss_pred ccccCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccc
Q 047998 101 LADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKL 180 (558)
Q Consensus 101 l~d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l 180 (558)
++.+++++|++||+|.++.+|+.|++.+++.|+++||++|.||+|++.++|.+++||. +.++||.|.|++|+ .+
T Consensus 26 m~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~--~~~~my~f~D~~g~----~l 99 (456)
T 3lc0_A 26 MVETEPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEE--ITEQMFNFITKGGH----RV 99 (456)
T ss_dssp CCCCSCSTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCH--HHHTCEEEECSSSC----EE
T ss_pred cccccCCCCCcccCHhHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccc--hhhceEEEEcCCCC----EE
Confidence 6667889999999999999999999999999999999999999999999997777873 67899999999885 89
Q ss_pred cccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHH
Q 047998 181 VVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKF 259 (558)
Q Consensus 181 ~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l 259 (558)
+|||+.|++++++++.+. .++++|+|+||+|+|||+|+++.| |+|||+|+|+|+||.+...+|+|++.++ ++|+.+
T Consensus 100 ~LRpd~T~~~aR~~~~~~-~~~~~P~r~~y~g~vfR~e~~~~g--R~ReF~Q~g~ei~G~~~~~~DaEvi~l~~~~l~~l 176 (456)
T 3lc0_A 100 ALRPEMTPSLARLLLGKG-RSLLLPAKWYSIPQCWRYEAITRG--RRREHYQWNMDIVGVKSVSAEVELVCAACWAMRSL 176 (456)
T ss_dssp EECSCSHHHHHHHHHHSC-TTCCSSEEEEECCEEECCCC-------CCEEEEEEEEEESCCSTHHHHHHHHHHHHHHHHT
T ss_pred ecCCcCHHHHHHHHHhcC-cccCCCEEEEEeccEEecCCCCCC--CccceEEEEEEEEcCCChHhhHHHHHHHHHHHHHc
Confidence 999999999999998874 367899999999999999999999 9999999999999999999999999887 789888
Q ss_pred HH--hhCCceEEe-----------ecC----------------Cchh-----------------h---------------
Q 047998 260 AY--EHTAIPVIA-----------GRK----------------SKVE-----------------T--------------- 278 (558)
Q Consensus 260 ~~--~~l~ipv~~-----------g~k----------------~~~e-----------------k--------------- 278 (558)
+. +.+.+.+.. |.. ..++ +
T Consensus 177 gl~~~~~~i~in~~~il~~~l~~~g~~~~~~~~v~~~idkl~~~~~~~~~~~L~~~~l~~~~~~~l~~~~~~~~~~~l~~ 256 (456)
T 3lc0_A 177 GLSSKDVGIKVNSRKVLQTVVEQAGVTSDKFAPVCVIVDKMEKIPREEVEAQLAVLGLEPTVVDAITTTLSLKSIDEIAQ 256 (456)
T ss_dssp TCCTTTEEEEEEEHHHHHHHHHHTTCCGGGHHHHHHHHTTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHTCCSHHHHHH
T ss_pred CCCCCceEEEEcCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCHHHHHHHHHHcCCCHHHHHHHHHHhccCCHHHHHH
Confidence 76 221111100 000 0000 0
Q ss_pred ccCC--------------------CcceEEEEEEcCcccee--ecceEec----CcccccccCeEEeCC---CCceeeEe
Q 047998 279 FAGA--------------------SRTYTIEAMMGDKRALQ--AGTSHNL----GQNFSLAFGTQFTDE---NGQRQHVW 329 (558)
Q Consensus 279 f~Ga--------------------~~~~~ie~~~~dgr~lq--~gti~~L----g~~~s~~f~i~y~d~---~g~~~~v~ 329 (558)
+.+. ...+.++. .-.|+++ .|++|+. |...+-+-|++|++. -|....++
T Consensus 257 ~l~~~~~~~~~L~~l~~~l~~~gi~~~~~~D~--~lvRgldYYTG~vFE~~~~~g~~~~I~~GGRYD~Lv~~fg~~~~~P 334 (456)
T 3lc0_A 257 RVGEEHEAVKELRQFFEQVEAYGYGDWVLFDA--SVVRGLAYYTGIVFEGFDREGKFRALCGGGRYDNLLTTYGSPTPIP 334 (456)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHTCGGGEEECT--TCCCSCTTCCSEEEEEEETTSCSSCSEEEEECSSHHHHTTCSSCCC
T ss_pred HHhHHHHHHHHHHHHHHHHHHcCCCceEEEec--CccCCccccCCeEEEEEECCCCcceEeecccHHHHHHHhCCCCCCC
Confidence 0000 00011221 1256665 5899863 334566778999763 23221345
Q ss_pred eeccch-HHHHHHHHHHHhCCCCCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHH
Q 047998 330 QTSWAI-STRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPG 408 (558)
Q Consensus 330 ~~s~Gi-~eRli~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slg 408 (558)
.++|++ ++|++.+|.+. | .+|..-.+.+|+|++.+.+ ...++.++++.||++|++|++|..+ .+++
T Consensus 335 avGFaig~eRl~~~l~~~-----~-~~~~~~~~~~v~v~~~~~~------~~~~a~~la~~LR~~Gi~ve~~~~~-~slk 401 (456)
T 3lc0_A 335 CAGFGFGDCVIVELLQEK-----R-LLPDIPHVVDDVVIPFDES------MRPHALAVLRRLRDAGRSADIILDK-KKVV 401 (456)
T ss_dssp EEEEEEESSHHHHHHHHT-----T-CCCCCCCCEEEEEEESSGG------GHHHHHHHHHHHHHTTCCEEECCSC-CCHH
T ss_pred EEEEEeEHHHHHHHHHhc-----C-CCCccCCCCcEEEEEcCHH------HHHHHHHHHHHHHHCCCeEEEecCC-CCHH
Confidence 667777 99999987543 2 2343334568999998753 4678999999999999999999987 5999
Q ss_pred HHHHHHHHcCCCEEEEeCceecCCCeEEEEEcCCCCcc
Q 047998 409 WKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQ 446 (558)
Q Consensus 409 kk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~ 446 (558)
+++++|++.|+|++|+||++|+++|+|+||++.+++|.
T Consensus 402 kq~k~A~k~ga~~vviiGe~E~~~g~v~vK~l~tgeQ~ 439 (456)
T 3lc0_A 402 QAFNYADRVGAVRAVLVAPEEWERGEVQVKMLREGTGK 439 (456)
T ss_dssp HHHHHHHHTTEEEEEEECHHHHHTTEEEEEECC-----
T ss_pred HHHHHHHHcCCCEEEEECCchhcCCeEEEEECCCCCeE
Confidence 99999999999999999999999999999999999876
No 28
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=100.00 E-value=2.1e-43 Score=381.73 Aligned_cols=280 Identities=16% Similarity=0.154 Sum_probs=245.6
Q ss_pred HHHHHHHHhccccccCC-----CCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCc
Q 047998 90 AWYLDVISNAELADYGP-----VRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPE 164 (558)
Q Consensus 90 ~wy~~~~~~a~l~d~~~-----vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~E 164 (558)
..|.+++++.+++|+.. .+|+++|+|.|++++++|++++++.+.++||++|.||.|++.++| ..+|||++|.++
T Consensus 168 rdH~eLg~~l~l~dfe~~~kvsGsgfy~l~p~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~-~~sG~l~~f~ee 246 (522)
T 3vbb_A 168 YSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVM-QEVAQLSQFDEE 246 (522)
T ss_dssp CCHHHHHHHTTCEECHHHHHHHSTTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHH-HHHSCCC-CCSC
T ss_pred cCHHHHHHhcCcEecccccccCCcceEEEcCHHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHH-hhcCCcccCccc
Confidence 46999999999999864 479999999999999999999999999999999999999999999 569999999999
Q ss_pred eEEEEecCCc----cccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC-----CCCccccceEEEecc
Q 047998 165 LALVTIGGGK----ELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-----TKPFVRTLEFLWQEG 235 (558)
Q Consensus 165 my~~~~~g~~----~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~-----~rGllR~REF~q~d~ 235 (558)
||++++.|+. ..+++++|+||+|++++.+|++++.||++||+|++++++|||+|.+ ++||+|+|||+|.|+
T Consensus 247 my~v~~~g~~~~~~~~~~~l~L~PTaE~~l~~l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~ 326 (522)
T 3vbb_A 247 LYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQ 326 (522)
T ss_dssp CCEEC------------CCEEECSSTHHHHHTTSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEE
T ss_pred ceEeecCCccccccccCcceeEcccCcHHHHHHHhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEE
Confidence 9999876421 1235799999999999999999999999999999999999999994 689999999999999
Q ss_pred eeeeCChHH--HHHHHHHHHHHHHHHHHhhCCceEEeecCCchhhccCCCcceEEEEEEcCc-cceeecceEecCccccc
Q 047998 236 HTAHATPEE--AEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGDK-RALQAGTSHNLGQNFSL 312 (558)
Q Consensus 236 h~~~~~~~~--a~~e~~~il~~y~~l~~~~l~ipv~~g~k~~~ekf~Ga~~~~~ie~~~~dg-r~lq~gti~~Lg~~~s~ 312 (558)
|+| +++++ +++++..|++.+..++.. |++|+.....+..+...++..+|.+|++++.. +..+++++.+.|+.+++
T Consensus 327 ~~f-~~pe~e~s~~e~e~ml~~~e~il~~-LGLpyrvv~l~tgdlg~~asktyDiE~w~P~~~~y~EIsScSnc~DyqAr 404 (522)
T 3vbb_A 327 FVY-SSPHDNKSWEMFEEMITTAEEFYQS-LGIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQAR 404 (522)
T ss_dssp EEE-ECSSTTHHHHHHHHHHHHHHHHHHH-TTCCEEEEECCGGGCCTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHH
T ss_pred EEE-eCCChHHHHHHHHHHHHHHHHHHHH-cCCceEEEEcCCccCCCchhheeceeEecCCCCceeEEEEecCCCCCccc
Confidence 998 66655 999999999999999876 89999877666667777888999999999874 45567888889999999
Q ss_pred ccCeEEeCC---CCceeeEee-eccch-HHHHHHHHHHHhCCCCCCCCCCCCCCCcE----EEEeCCCC
Q 047998 313 AFGTQFTDE---NGQRQHVWQ-TSWAI-STRFVGGIIMTHGDDTGLMLPPRIAPIQV----VIVPIWKK 372 (558)
Q Consensus 313 ~f~i~y~d~---~g~~~~v~~-~s~Gi-~eRli~~lie~~~D~~Gl~lP~~lAP~qV----~Iipi~~~ 372 (558)
+++++|.+. +|+.+++|+ +++|+ ++|+|++|+|+|+++.|+++|+.++|+.. .|||+..+
T Consensus 405 r~~iry~~~~~~~~k~~~vhtlNgs~lav~R~l~AiLEn~q~~dGi~iP~~L~Py~~~~~~~~ip~~~~ 473 (522)
T 3vbb_A 405 RLRIRYGQTKKMMDKVEFVHMLNATMCATTRTICAILENYQTEKGITVPEKLKEFMPPGLQELIPFVKP 473 (522)
T ss_dssp HHTCEESCC---CCCCCBCEEEEEEEEEHHHHHHHHHHHHBCSSEEECCHHHHTTSCTTSSSEEECCSC
T ss_pred eeeeEEccccccCCCeeeceEEeccchHHHHHHHHHHHhCCCCCCeecChHhcCeeCCCcceEeecCCC
Confidence 999999875 677789998 45776 99999999999999999999999999998 89998754
No 29
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=100.00 E-value=1.6e-43 Score=378.96 Aligned_cols=276 Identities=16% Similarity=0.231 Sum_probs=235.2
Q ss_pred CCCCcchH-HHHHHHHHhccccccCC-----CCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhh
Q 047998 82 TPRSQDFN-AWYLDVISNAELADYGP-----VRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEA 155 (558)
Q Consensus 82 ~~~~~~~~-~wy~~~~~~a~l~d~~~-----vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~s 155 (558)
+++..+|. .||.+++++.+++|+.. .+|+++|+|.|+++|++|++++++.+.++||++|.||+|++.++|. .+
T Consensus 130 ~~~~~~f~~~~H~~l~~~l~l~d~~~~~~~~g~G~~~~~p~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~-~s 208 (425)
T 2dq3_A 130 EPRKFDFEPKPHWEIGERLGILDFKRGAKLSGSRFTVIAGWGARLERALINFMLDLHTKKGYKEICPPHLVKPEILI-GT 208 (425)
T ss_dssp CCCCCSSCCCCHHHHHHHTTCEEHHHHHHHHCSSCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHH-HH
T ss_pred CCCCCCCCcccHHHHHhhCCeEEecccccccCCCceEECcHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHH-hc
Confidence 34555674 68999999999999865 3899999999999999999999999999999999999999999994 58
Q ss_pred cCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC-----CCCccccceE
Q 047998 156 SHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-----TKPFVRTLEF 230 (558)
Q Consensus 156 gh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~-----~rGllR~REF 230 (558)
||++.|.++||++++ +.++||||+|++++.+|++++.+|++||+|++|+|+|||+|.+ ++||+|+|||
T Consensus 209 G~~~~f~~emy~~~~-------~~l~LrPt~e~~i~~~~~~~i~s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF 281 (425)
T 2dq3_A 209 GQLPKFEEDLYKCER-------DNLYLIPTAEVPLTNLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQF 281 (425)
T ss_dssp SCTTTTGGGSCBCTT-------TCCEECSSTHHHHHGGGTTEEEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEE
T ss_pred CCCCcChhhheEecC-------CeEEEcCCCcHHHHHHHHhhccccccCCeEEEEecCEecCCCCcccccccCcccccce
Confidence 999999999998852 3799999999999999999999999999999999999999994 6789999999
Q ss_pred EEecceeeeCChHHHHHHHHHHHHHHHHHHHhhCCceEEeecCCchhhccCCCcceEEEEEEcCccce-eecceEecCcc
Q 047998 231 LWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGDKRAL-QAGTSHNLGQN 309 (558)
Q Consensus 231 ~q~d~h~~~~~~~~a~~e~~~il~~y~~l~~~~l~ipv~~g~k~~~ekf~Ga~~~~~ie~~~~dgr~l-q~gti~~Lg~~ 309 (558)
+|.|+|+| ++++++++++..+++.+.+++.. |++|+.....+..+...++..+|++|++++...++ ++..+.+.++.
T Consensus 282 ~q~E~~~f-~~pe~s~~~~~e~i~~~~~il~~-LGL~~rvv~l~~gdlg~~a~~~~diE~w~p~~~~~~ei~s~sn~~Df 359 (425)
T 2dq3_A 282 DKVELVKI-VHPDTSYDELEKLVKDAEEVLQL-LGLPYRVVELCTGDLGFSAAKTYDIEVWFPSQNKYREISSCSNCEDF 359 (425)
T ss_dssp EEEEEEEE-ECGGGHHHHHHHHHHHHHHHHHH-HTCCEEEEECCTTTCCTTCSEEEEEEEEEGGGTEEEEEEEEEECTTH
T ss_pred EEeeEEEE-CCHHHHHHHHHHHHHHHHHHHHH-CCCceEEEEecCCcCCChHHhccchhhccchhHHHHHHHHcCCcccc
Confidence 99999998 66678999999999999999876 79997544333334445677889999999864333 22222233445
Q ss_pred cccccCeEEeCCC-CceeeEeeeccch---HHHHHHHHHHHhCCCCC-CCCCCCCCCCc-EEEEe
Q 047998 310 FSLAFGTQFTDEN-GQRQHVWQTSWAI---STRFVGGIIMTHGDDTG-LMLPPRIAPIQ-VVIVP 368 (558)
Q Consensus 310 ~s~~f~i~y~d~~-g~~~~v~~~s~Gi---~eRli~~lie~~~D~~G-l~lP~~lAP~q-V~Iip 368 (558)
++++|+++|.+.+ |+..++| +++|+ ++|+|++|+|+|+++.| ++||+|++|+| +-+|+
T Consensus 360 qa~r~~i~y~~~~~~k~~~vH-tl~Gs~~av~R~i~allE~~~~~~G~i~iP~~L~P~~~~~~i~ 423 (425)
T 2dq3_A 360 QARRMNTRFKDSKTGKNRFVH-TLNGSGLAVGRTLAAILENYQQEDGSVVVPEVLRDYVGTDVIR 423 (425)
T ss_dssp HHHHHTEEEECTTTCSEEECE-EEEEEEEEHHHHHHHHHHHTBCTTSCEECCTTTHHHHSCSEEC
T ss_pred CcccCCeEEECCCCCeeEEEE-EEeccccHHHHHHHHHHHhCCCCCCCEecCccccCccCcccCC
Confidence 6999999999987 5667899 88888 89999999999999999 99999999999 76664
No 30
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=100.00 E-value=1.1e-42 Score=373.69 Aligned_cols=278 Identities=17% Similarity=0.145 Sum_probs=247.1
Q ss_pred ch-HHHHHHHHHhccccccCC-----CCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccc
Q 047998 87 DF-NAWYLDVISNAELADYGP-----VRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEG 160 (558)
Q Consensus 87 ~~-~~wy~~~~~~a~l~d~~~-----vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~ 160 (558)
+| ..+|.+++++.+++|+.. .+|+++|+|.|++++++|++++++.+.++||++|+||.|++.++| ..+||++.
T Consensus 148 ~~~~~dH~elg~~l~l~df~~~~k~sGsg~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~-~~sG~l~~ 226 (485)
T 3qne_A 148 APAKLSHHEVLLRLDGYDPERGVRIVGHRGYFLRNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVM-AKTAQLSQ 226 (485)
T ss_dssp CBCCSCHHHHHHHTTCEEHHHHHHHHCTTCCEECTHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHH-HHHSCHHH
T ss_pred CCCccCHHHHHhhcCCcccccccccccceeEEEecHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHH-hhcCCccc
Confidence 44 478999999999999853 469999999999999999999999999999999999999999999 56899999
Q ss_pred cCCceEEEEecCCccccccccccCCCcHHHHHHHHHhHhh--cCCCCeEEEEEeeeeecCCC-----CCCccccceEEEe
Q 047998 161 FSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHS--YRDLPLLVNQWANVTRWEMR-----TKPFVRTLEFLWQ 233 (558)
Q Consensus 161 f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s--~rdLPlkl~q~~~vfR~E~~-----~rGllR~REF~q~ 233 (558)
|.++||++++.+ ++++|+||+|.+++.++++++.+ |++||+|++||++|||+|.+ ++||+|+|||+|.
T Consensus 227 f~eemf~v~~~~-----~~~~LipTaE~pl~~l~~~ei~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kv 301 (485)
T 3qne_A 227 FDEELYKVIDGE-----DEKYLIATSEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKI 301 (485)
T ss_dssp HTTTCCEEEETT-----EEEEECSSTHHHHHHHTTTCEESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEE
T ss_pred cccceEEEeCCC-----CeEEEeccccHHHHHHHhccccccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeee
Confidence 999999998752 47999999999999999998876 99999999999999999995 5899999999999
Q ss_pred cceeeeCChHHHHHHHHHHHHHHHHHHHhhCCceEEeecCCchhhccCCCcceEEEEEEcCc-cceeecceEecCccccc
Q 047998 234 EGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGDK-RALQAGTSHNLGQNFSL 312 (558)
Q Consensus 234 d~h~~~~~~~~a~~e~~~il~~y~~l~~~~l~ipv~~g~k~~~ekf~Ga~~~~~ie~~~~dg-r~lq~gti~~Lg~~~s~ 312 (558)
|+|+| ++++++++++..|+++|.+++.. |++|+.....+..+...++..+|.+|++|+.. +..+++++.++|+.+|+
T Consensus 302 E~~~f-~~pe~s~~e~e~ml~~~e~il~~-LgLpyrvv~~~tgdlg~~a~~tyDiE~w~P~~~~~~Eiss~Snc~dyqAr 379 (485)
T 3qne_A 302 EQFVL-TEPEKSWEEFDRMIGCSEEFYQS-LGLPYRVVGIVSGELNNAAAKKYDLEAWFPFQQEYKELVSCSNCTDYQSR 379 (485)
T ss_dssp EEEEE-ECGGGHHHHHHHHHHHHHHHHHH-TTCCEEEEECCGGGCCTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHH
T ss_pred eEEEE-eCHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEEcCCcccCCchhhheeeeEeccCCCceeEEEEecCCcCcccc
Confidence 99998 78899999999999999999877 89999887777677778889999999999874 44567777789999999
Q ss_pred ccCeEEeCC---CCceeeEee-eccch-HHHHHHHHHHHhCCCCCCCCCCCCCCCcE---EEEeCCCC
Q 047998 313 AFGTQFTDE---NGQRQHVWQ-TSWAI-STRFVGGIIMTHGDDTGLMLPPRIAPIQV---VIVPIWKK 372 (558)
Q Consensus 313 ~f~i~y~d~---~g~~~~v~~-~s~Gi-~eRli~~lie~~~D~~Gl~lP~~lAP~qV---~Iipi~~~ 372 (558)
+++++|.+. +|+.+++|+ +++|+ ++|+|++|+|+|+|+.|+++|+.++|+.. .+||+..+
T Consensus 380 r~~iry~~~~~~~~~~~~vhtlNgt~lav~R~l~AiLEn~q~~dGi~iP~~L~py~~g~~~~i~~~~~ 447 (485)
T 3qne_A 380 NLEIRCGIKQQNQQEKKYVHCLNSTLSATERTICCILENYQKEDGLVIPEVLRKYIPGEPEFIPYIKE 447 (485)
T ss_dssp HTTCEECC------CCCBCEEEEEEEEEHHHHHHHHHHHSEETTEEECCHHHHTTSTTCCSEEECCCC
T ss_pred ccceEEecccccCCCceeeEEEecchhHHHHHHHHHHHhcCCCCceecChhhcCccCCcceEeecccc
Confidence 999999876 567789997 45776 99999999999999999999999999975 77888643
No 31
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=100.00 E-value=1.2e-42 Score=371.71 Aligned_cols=270 Identities=13% Similarity=0.154 Sum_probs=234.3
Q ss_pred CCcch-HHHHHHHHHhccccccCC-----CCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcC
Q 047998 84 RSQDF-NAWYLDVISNAELADYGP-----VRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASH 157 (558)
Q Consensus 84 ~~~~~-~~wy~~~~~~a~l~d~~~-----vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh 157 (558)
+.-+| ...|.+++++.+++| .. .+|+++|+|.|+++|++|++++++.+.++||++|.||+|++.++|. .+||
T Consensus 127 ~~~~~~~~~H~~lg~~l~l~d-~~~~~~~g~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~-~sG~ 204 (421)
T 1ses_A 127 PEFSFPPLDHVALMEKNGWWE-PRISQVSGSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFL-GTGH 204 (421)
T ss_dssp CCCSSCCCCHHHHHHHHTCBC-TTHHHHHCSSCCCEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHH-HHTC
T ss_pred CccCCCCCCHHHHHHHcCccc-cccccccCCCeEEECcHHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHH-hcCC
Confidence 33345 356999999999999 54 3899999999999999999999999999999999999999999994 5899
Q ss_pred ccccCCceEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecC-----CCCCCccccceEEE
Q 047998 158 VEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWE-----MRTKPFVRTLEFLW 232 (558)
Q Consensus 158 ~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E-----~~~rGllR~REF~q 232 (558)
++.|.++||++++ +.++|+||+|++++.+|++++.||++||+|++|||+|||+| ++++||+|+|||+|
T Consensus 205 ~~~f~~emy~~~d-------~~l~L~Pt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q 277 (421)
T 1ses_A 205 FPAYRDQVWAIAE-------TDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHK 277 (421)
T ss_dssp TTTTGGGSCBBTT-------SSEEECSSTHHHHHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEE
T ss_pred CCcCchhcEEEcC-------CeEEEeecCcHHHHHHhcccccCchhCCEEEEecCCeecCCccccCcCCCCCeeeeeeee
Confidence 9999999999863 37999999999999999999999999999999999999999 45889999999999
Q ss_pred ecceeeeCC-hHHHHHHHHHHHHHHHHHHHhhCCceEEeecCCchhhccCCCcceEEEEEEcCccce-eecceEecCccc
Q 047998 233 QEGHTAHAT-PEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGDKRAL-QAGTSHNLGQNF 310 (558)
Q Consensus 233 ~d~h~~~~~-~~~a~~e~~~il~~y~~l~~~~l~ipv~~g~k~~~ekf~Ga~~~~~ie~~~~dgr~l-q~gti~~Lg~~~ 310 (558)
.|+|+|+.. .+++++++..+++.+.+++.. |++|+........+...++..+|++|++++...++ ++.++.+.++..
T Consensus 278 ~E~~~f~~p~~e~s~~~~~e~~~~~~~il~~-LGL~~rvv~l~t~dlg~~a~~~~DiE~w~p~~~~~~ei~s~s~~~Dfq 356 (421)
T 1ses_A 278 VEQYVLTEASLEASDRAFQELLENAEEILRL-LELPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQ 356 (421)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHHHHHHHHH-TTCCEEEEECCHHHHCTTCSEEEEEEEEETTTTEEEEEEEEEEEETHH
T ss_pred eeEEEEeCCCHHHHHHHHHHHHHHHHHHHHH-CCCceEEEEecCccCCchhhhcccHhheechhccchheeeccccchhh
Confidence 999999444 389999999999999999876 89998654433344455677889999999875444 556666667777
Q ss_pred ccccCeEEeCCCCceeeEee-eccch-HHHHHHHHHHHhCCCCC-CCCCCCCCCCc
Q 047998 311 SLAFGTQFTDENGQRQHVWQ-TSWAI-STRFVGGIIMTHGDDTG-LMLPPRIAPIQ 363 (558)
Q Consensus 311 s~~f~i~y~d~~g~~~~v~~-~s~Gi-~eRli~~lie~~~D~~G-l~lP~~lAP~q 363 (558)
+++|+++|.+.+|+.+++|+ .+.|+ ++|+|++|+|+|+++.| ++||++++|+.
T Consensus 357 arr~~i~y~~~~~~~~~vhtlngs~lav~R~l~allE~~~~~dG~i~iP~~L~Py~ 412 (421)
T 1ses_A 357 ARRANLRYRDPEGRVRYAYTLNNTALATPRILAMLLENHQLQDGRVRVPQALIPYM 412 (421)
T ss_dssp HHHHTCEEECTTSCEEECEEEEEEEEEETHHHHHHHHHHBCTTSCEECCGGGHHHH
T ss_pred hhhhcCEeECCCCCEEEEEecCCccchHHHHHHHHHHhCCCCCCCEecChhcCCcc
Confidence 99999999999888888884 44555 99999999999999999 99999999987
No 32
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=100.00 E-value=2.2e-42 Score=376.00 Aligned_cols=275 Identities=18% Similarity=0.209 Sum_probs=232.9
Q ss_pred ceeecCCCCcchHHHHHHHHHhccccccCCCCcceEeCchhHHHHHHHHHHHHHH-HHHcCCeeeecCccccHhhHhhhh
Q 047998 77 RERVITPRSQDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVK-FKETGHSNMYFPQFIPYSFIEKEA 155 (558)
Q Consensus 77 ~~~~i~~~~~~~~~wy~~~~~~a~l~d~~~vkG~~~~lP~g~~i~~~I~~~i~~~-~~~~G~~ei~tP~l~~~~l~~k~s 155 (558)
....-|+++.+|.+||.+++.++|++.+..++|+++|+|.|+++|++|++++++. +.++||++|.||+|++.++|.+ +
T Consensus 190 ~l~e~t~re~~f~~~~~~ll~raG~i~~~~~~G~y~~~P~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~-S 268 (522)
T 2cja_A 190 LLWQREPMEHPFKEDPTQAMMKEGWLKRGSSRGQWIHGPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMK-S 268 (522)
T ss_dssp EEEECCCCCCCCCSCHHHHHHHTTSEEECSSTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHH-H
T ss_pred HHHhhcccCCCcchHHHHHHHHCCCeeeeCCCCeEEECchHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhh-c
Confidence 3344578889999999999999999998889999999999999999999999975 8999999999999999999955 8
Q ss_pred cCccccCCceEEEEecC--C-------------------c----c-ccccccccCCCcHHHHHHHHHhHhhcCCCCeEEE
Q 047998 156 SHVEGFSPELALVTIGG--G-------------------K----E-LEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVN 209 (558)
Q Consensus 156 gh~~~f~~Emy~~~~~g--~-------------------~----~-l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~ 209 (558)
||++.|.++||+++..+ + . . -++.++||||+|++++.+|++++.||++||+++|
T Consensus 269 Gh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~ 348 (522)
T 2cja_A 269 GHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVF 348 (522)
T ss_dssp TGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCHHHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEE
T ss_pred CCcCccccceeeeecCCccchhhhhhhhhhhhccccccccccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEE
Confidence 99999999999997422 1 0 0 1358999999999999999999999999999999
Q ss_pred E-EeeeeecCCCC--CCccccceEEEecceeeeCChHHHHHHHHHHHHHHHHHHHhhCCceEEeecCCchhhcc------
Q 047998 210 Q-WANVTRWEMRT--KPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFA------ 280 (558)
Q Consensus 210 q-~~~vfR~E~~~--rGllR~REF~q~d~h~~~~~~~~a~~e~~~il~~y~~l~~~~l~ipv~~g~k~~~ekf~------ 280 (558)
| ||+||||| ++ +||+|+|||+|.|+|+| ++++++++++..+++.|...+.+.|++| ..- ...+.|.
T Consensus 349 q~ig~~FR~E-pgs~~GL~R~REF~q~E~~~F-~~pe~s~ee~ee~i~~~~~~~l~~LGLp-~v~--~~~D~f~~a~~G~ 423 (522)
T 2cja_A 349 DRSGTSHRYE-SGGIHGIERVDEFHRIEIVWI-GTKEEVLKCAEELHDRYMHIFNDILDIE-WRK--ARVTPWFMAQEGL 423 (522)
T ss_dssp ECSSEEECCC-SSSCCCTTSCSEEEEEEEEEE-EEHHHHHHHHHHHHHHHHHHHHHTSCCC-EEE--EEC----------
T ss_pred EEcCceEeCC-CCCCCCCeEeEEEEEeeEEEE-eChHHHHHHHHHHHHHHHHHHHHHcCCC-EEe--eccCCcccccccc
Confidence 9 99999999 75 89999999999999998 6899999999999955555555558999 321 1223333
Q ss_pred -C-----CCcceEEEEEEc----CccceeecceEecCcccccccCeEEeCCCCceeeEeeeccch-HHHHHHHHHHHhCC
Q 047998 281 -G-----ASRTYTIEAMMG----DKRALQAGTSHNLGQNFSLAFGTQFTDENGQRQHVWQTSWAI-STRFVGGIIMTHGD 349 (558)
Q Consensus 281 -G-----a~~~~~ie~~~~----dgr~lq~gti~~Lg~~~s~~f~i~y~d~~g~~~~v~~~s~Gi-~eRli~~lie~~~D 349 (558)
| +..+|++|++++ +++.++++++++.+++++++|+++|. +|+ ++|++|+|+ ++|+++||+++|++
T Consensus 424 ~G~~q~~a~~k~DiE~~~P~~~g~~~~~eisS~s~~~d~qarr~~Ir~~--~~~--~vht~~~Glgv~Rli~AlLE~~~~ 499 (522)
T 2cja_A 424 LGLAEENTVGTTDYEACLPYRGPDGEWLEFQNVSINGDKYPKGFNVKLQ--SGD--ELWSGCSGVGLERWAAVFLAQKGL 499 (522)
T ss_dssp ------CCCEEEEEEECCGGGCTTCCCEEEEEEEECTTHHHHHHTCEET--TCC--CEEEEEEEEEHHHHHHHHHHHHCS
T ss_pred ccchhccccceEEEEEecccccCCCcEEEEeeechhhhhcccccceEcC--CCC--EEEEeccCcHHHHHHHHHHHHcCC
Confidence 1 467788999988 57889999999999999999999986 343 789999998 89999999999998
Q ss_pred CCCCCCCCCCCCC
Q 047998 350 DTGLMLPPRIAPI 362 (558)
Q Consensus 350 ~~Gl~lP~~lAP~ 362 (558)
+.| .||..+.|+
T Consensus 500 ~~~-~wP~~lr~y 511 (522)
T 2cja_A 500 DPA-NWPEEFRNR 511 (522)
T ss_dssp CGG-GSCHHHHHH
T ss_pred CCC-cCchHHHHh
Confidence 866 889776654
No 33
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=100.00 E-value=3e-41 Score=369.34 Aligned_cols=269 Identities=14% Similarity=0.165 Sum_probs=242.0
Q ss_pred CCCcch-HHHHHHHHHhccccccCC-----CCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhc
Q 047998 83 PRSQDF-NAWYLDVISNAELADYGP-----VRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEAS 156 (558)
Q Consensus 83 ~~~~~~-~~wy~~~~~~a~l~d~~~-----vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sg 156 (558)
++.-+| ..+|.+++++.+++| .. .+|+++|+|.|.+++++|.+++++.+.+.||++|.||.|.+.++| ..+|
T Consensus 235 ~~~~~~~~~dH~~lg~~l~l~d-~~~~k~~G~g~~~~~p~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~-~~sG 312 (536)
T 3err_A 235 PPEFSFPPLDHVALMEKNGWWE-PRISQVSGSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAF-LGTG 312 (536)
T ss_dssp CCCCSSCCCCHHHHHHHHTCBC-TTHHHHHCSSCCCEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHH-HHHT
T ss_pred CCCCCCCCCCHHHHHHHcCCcc-cccccCCCCceeEEcCHHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHH-HhcC
Confidence 334455 478999999999999 54 579999999999999999999999999999999999999999999 6699
Q ss_pred CccccCCceEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCC-----CCCCccccceEE
Q 047998 157 HVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEM-----RTKPFVRTLEFL 231 (558)
Q Consensus 157 h~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~-----~~rGllR~REF~ 231 (558)
||+.|.++||++++ ++++|+||+|++++.+|++++.||++||+|++|+++|||+|. .++||+|+|||+
T Consensus 313 ~~~~f~e~mf~~~~-------~~~~L~PT~E~~~~~l~~~~i~s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~ 385 (536)
T 3err_A 313 HFPAYRDQVWAIAE-------TDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFH 385 (536)
T ss_dssp CTTTTGGGCCEETT-------TTEEECSSTHHHHHHHTTTCEEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEE
T ss_pred CcccChhhceEecC-------CCEEEccCCcHHHHHHHhcccccHhhCCeeEEEecccccCCccccCCCCCCceeeeeeE
Confidence 99999999999864 369999999999999999999999999999999999999998 378999999999
Q ss_pred EecceeeeCChH--HHHHHHHHHHHHHHHHHHhhCCceEEeecCCchhhccCCCcceEEEEEEcC-ccceeecceEecCc
Q 047998 232 WQEGHTAHATPE--EAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD-KRALQAGTSHNLGQ 308 (558)
Q Consensus 232 q~d~h~~~~~~~--~a~~e~~~il~~y~~l~~~~l~ipv~~g~k~~~ekf~Ga~~~~~ie~~~~d-gr~lq~gti~~Lg~ 308 (558)
|.|+|+| ++++ ++++++..+++.|.+++.. |++|+.....+..+...++..+|.+|+++++ ++..+++++++.|+
T Consensus 386 k~e~~~f-~~pe~e~s~~~~e~~~~~~~~i~~~-LgLpyrvv~~~tgdlg~~a~~~yDiE~w~p~~~~~~Ei~s~sn~~d 463 (536)
T 3err_A 386 KVEQYVL-TEASLEASDRAFQELLENAEEILRL-LELPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLD 463 (536)
T ss_dssp EEEEEEE-ECSCHHHHHHHHHHHHHHHHHHHHH-TTCCEEEEECCTTTSCTTCSEEEEEEEEEGGGTEEEEEEEEEEEET
T ss_pred EEEEEEE-ECCchHHHHHHHHHHHHHHHHHHHH-cCCcEEEEEcCCcccCCChhheeeeeEecCCCCCeEEEEEecCccC
Confidence 9999999 5555 9999999999999999876 8999987666666777778889999999987 45567889999999
Q ss_pred ccccccCeEEeCCCCceeeEee-eccch-HHHHHHHHHHHhCCCCC-CCCCCCCCCC
Q 047998 309 NFSLAFGTQFTDENGQRQHVWQ-TSWAI-STRFVGGIIMTHGDDTG-LMLPPRIAPI 362 (558)
Q Consensus 309 ~~s~~f~i~y~d~~g~~~~v~~-~s~Gi-~eRli~~lie~~~D~~G-l~lP~~lAP~ 362 (558)
.++++++++|.+.+|+.+++|+ +++|+ ++|+|++|+|+|+++.| +++|+.++|+
T Consensus 464 yqarr~~iry~~~~~k~~~vhtlngs~~a~~R~l~ailen~q~~dg~i~iP~~L~py 520 (536)
T 3err_A 464 WQARRANLRYRDPEGRVRYAYTLNNTALATPRILAMLLENHQLQDGRVRVPQALIPY 520 (536)
T ss_dssp HHHHHHTCEEECTTSCEEECEEEEEEEEEETHHHHHHHHHHBCTTSCEECCGGGHHH
T ss_pred hhhcccCeEEECCCCCeEeeeEEeccchhHHHHHHHHHHhcCCCCCcEeCChhhCCc
Confidence 9999999999999999899998 45776 99999999999999999 8999999987
No 34
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=100.00 E-value=8.4e-41 Score=359.49 Aligned_cols=276 Identities=16% Similarity=0.145 Sum_probs=244.1
Q ss_pred HHHHHHHHHhccccccC------CCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccC
Q 047998 89 NAWYLDVISNAELADYG------PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFS 162 (558)
Q Consensus 89 ~~wy~~~~~~a~l~d~~------~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~ 162 (558)
..+|.+++++.+++|+. ..+|+++|+|.|++++++|++++++.+.++||++|.||.|.+.++| ..+|||+.|.
T Consensus 173 ~rdH~~Lg~~l~l~df~~~a~k~sGsgf~~~~p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~-~~sG~~~~f~ 251 (484)
T 3lss_A 173 KLNHVSIMERLGMMDTSKAVTSMAGGRSYVLKGGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVM-GEVAQLSQFD 251 (484)
T ss_dssp SSCHHHHHHHTTCEECSHHHHHHHCTTCCEEEHHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHH-HHHSCHHHHH
T ss_pred CCCHHHHHhhCCceeccccccccCCceEEEECCHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHH-HhcCCccccc
Confidence 46799999999999986 2468999999999999999999999999999999999999999999 5699999999
Q ss_pred CceEEEEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC-----CCCccccceEEEeccee
Q 047998 163 PELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-----TKPFVRTLEFLWQEGHT 237 (558)
Q Consensus 163 ~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~-----~rGllR~REF~q~d~h~ 237 (558)
++||++++.+ +.++|+||+|++++.+|++++.||++||+|++++++|||+|.. ++||+|+|||+|.|+|+
T Consensus 252 e~mf~v~~~~-----~~~~L~PTaE~~l~~l~~~~i~sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~ 326 (484)
T 3lss_A 252 EELYQVSGDG-----DKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFV 326 (484)
T ss_dssp HTCCEEESSS-----SCEEECSSTHHHHHHHTTTCEESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEE
T ss_pred ccceEeecCC-----cceEEeccCcHHHHHHHhccccchhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEE
Confidence 9999998752 4799999999999999999999999999999999999999983 57999999999999999
Q ss_pred eeCChHH--HHHHHHHHHHHHHHHHHhhCCceEEeecCCchhhccCCCcceEEEEEEcC-ccceeecceEecCccccccc
Q 047998 238 AHATPEE--AEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD-KRALQAGTSHNLGQNFSLAF 314 (558)
Q Consensus 238 ~~~~~~~--a~~e~~~il~~y~~l~~~~l~ipv~~g~k~~~ekf~Ga~~~~~ie~~~~d-gr~lq~gti~~Lg~~~s~~f 314 (558)
| +++++ +++++..|++.+..++.. |++|+.....+..+...++..+|.+|++++. ++..+++++.+.++..|+++
T Consensus 327 f-~~pe~~~s~~e~e~~~~~~e~il~~-LGLpyrvv~l~tgdlg~~a~~~yDiE~w~P~~~~~~EIsS~Snc~dyqArr~ 404 (484)
T 3lss_A 327 V-CSPRQEESWRHLEDMITTSEEFNKS-LGLPYRVVNICSGALNNAAAKKYDLEAWFPASGAFRELVSCSNCTDYQSQSV 404 (484)
T ss_dssp E-ECSSTTHHHHHHHHHHHHHHHHHHH-HTCCEEEEECCTTTCCSSCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHH
T ss_pred E-eCcchHHHHHHHHHHHHHHHHHHHH-cCCcEEEEEcCCcccCCchhheechheecCCCCCeeEEEEecCccccccccc
Confidence 9 67777 999999999999999876 8999877655555656677889999999987 45567888889999999999
Q ss_pred CeEEeCCC------CceeeEee-eccch-HHHHHHHHHHHhCCCCCCCCCCCCCCCc--EEEEeCCCC
Q 047998 315 GTQFTDEN------GQRQHVWQ-TSWAI-STRFVGGIIMTHGDDTGLMLPPRIAPIQ--VVIVPIWKK 372 (558)
Q Consensus 315 ~i~y~d~~------g~~~~v~~-~s~Gi-~eRli~~lie~~~D~~Gl~lP~~lAP~q--V~Iipi~~~ 372 (558)
+++|.+.+ |+.+++|+ ++.|+ ++|+|.+|+|+|.++.|+++|+.++|+. +-+||...+
T Consensus 405 ~iry~~~~~~~~~~~~~~~vhtlNgt~~av~R~l~AiLEn~q~~dGi~iP~~L~pym~g~~~i~~~~~ 472 (484)
T 3lss_A 405 NCRYGPNLRGTAAQNVKEYCHMLNGTLCAITRTMCCICENYQTEEGVVIPDVLRPYMMGIEMIRFENN 472 (484)
T ss_dssp TCEESSCCC----CCSCEECEEEEEEEEEHHHHHHHHHHHHBCSSEEECCGGGGGGTTTCCEEECCCC
T ss_pred ceEEeccccccccCCCceeeeEEeccchHHHHHHHHHHHhcCCCCCeeCChhhcCccCCcceeecCcc
Confidence 99998763 56678987 33555 8999999999999999999999999997 778888654
No 35
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=99.97 E-value=1.2e-31 Score=285.57 Aligned_cols=293 Identities=14% Similarity=0.057 Sum_probs=210.7
Q ss_pred cCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCcccccccccc
Q 047998 104 YGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVR 183 (558)
Q Consensus 104 ~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LR 183 (558)
++.++|++||+|.++.+|+.|++.+++.|+++||++|.||+|++.++|.+. + +.+.++||.|.|++|+ .++||
T Consensus 10 ~~~p~G~~d~lP~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~-g--~~~~~~my~f~D~~g~----~l~LR 82 (400)
T 3od1_A 10 FEKPFGMRDTLPEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVV-S--AILDQQLFKLLDQQGN----TLVLR 82 (400)
T ss_dssp TCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHH-S--SSCGGGSCEEECTTSC----EEEEC
T ss_pred ccCCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhc-C--CccccceEEEECCCCC----EEEEC
Confidence 578999999999999999999999999999999999999999999999664 4 4578999999999885 89999
Q ss_pred CCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHHHHh
Q 047998 184 PTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKFAYE 262 (558)
Q Consensus 184 Pt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l~~~ 262 (558)
|+.|+++++++++.. .++++|+|+||+|+|||+|+|+.| |+|||+|+|+|+||.+...+|+|++.++ ++++.++.+
T Consensus 83 pd~T~~~aR~~~~~~-~~~~~P~r~~y~g~vfR~e~~~~g--R~Ref~Q~g~ei~G~~~~~aDaEvi~l~~~~l~~lgl~ 159 (400)
T 3od1_A 83 PDMTAPIARLVASSL-KDRAYPLRLAYQSNVYRAQQNEGG--KPAEFEQLGVELIGDGTASADGEVIALMIAALKRAGLS 159 (400)
T ss_dssp SCSHHHHHHHHHHHC-SSSCSCEEEEEEEEEECCCC---C--CCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHhhc-ccCCCCeEEEEEcCEEeCCCCCCC--CCCccEEeEEEEECCCChHhHHHHHHHHHHHHHHCCCC
Confidence 999999999988764 357899999999999999999989 9999999999999999999999999887 788887653
Q ss_pred hCCceEEe-----------ecCCc----------------h-----------------hhc-------------------
Q 047998 263 HTAIPVIA-----------GRKSK----------------V-----------------ETF------------------- 279 (558)
Q Consensus 263 ~l~ipv~~-----------g~k~~----------------~-----------------ekf------------------- 279 (558)
.+.+.+.. |...+ . .++
T Consensus 160 ~~~i~l~~~~i~~~ll~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~l~~~~~~~l~~l~~~~g~~~~l~~~~~l~~~ 239 (400)
T 3od1_A 160 EFKVAIGHVGYVNALLMDVVGNEQRADRLRRFLYEKNYVGYREHVKSLNLSTIDKSRLMNLLSLRGGRAAIEEARGLIQT 239 (400)
T ss_dssp SEEEEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHTTCHHHHHHHHHHSSSCHHHHHHHHHGGGCEESHHHHHHHHTTCCS
T ss_pred ceEEEecCHHHHHHHHHHcCCCHHHHHHHHHHHHhcChhHHHHHHHhcCCCHHHHHHHHHHHhccCCHHHHHHHHhhhcC
Confidence 11111100 00000 0 000
Q ss_pred -------------------cCCCcceEEEEEEcCcccee--ecceEec---CcccccccCeEEeCC---CCceeeEeeec
Q 047998 280 -------------------AGASRTYTIEAMMGDKRALQ--AGTSHNL---GQNFSLAFGTQFTDE---NGQRQHVWQTS 332 (558)
Q Consensus 280 -------------------~Ga~~~~~ie~~~~dgr~lq--~gti~~L---g~~~s~~f~i~y~d~---~g~~~~v~~~s 332 (558)
.|....+.++. .-.|+++ .|++|+. +...+-+-|++|++. -|.. ++.++
T Consensus 240 ~~~~~~l~~l~~l~~~L~~~gi~~~~~~D~--~lvRgldYYTG~vFe~~~~~~g~~i~~GGRYD~L~~~fG~~--~pavG 315 (400)
T 3od1_A 240 EKGKTALAEMTKLYEVLESYGASEYVKFDL--TLVLHMSYYTGVVFEGYGNRLGVPLCSGGRYDELLSKFHRP--AQATG 315 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCGGGEEEET--TCCSCSSSCCSEEEEEEETTCSSEEEEEEECTTHHHHTTCC--CCEEE
T ss_pred hhhHHHHHHHHHHHHHHHHcCCCceEEEeC--CccCCCcccCCeEEEEEECCCCCeeecccccchhhhccCCC--CCEEE
Confidence 01011122332 2256665 5888864 112355678899762 2433 55667
Q ss_pred cch-HHHHHHHHHHHhCCCCCCCCCCCCCCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHH
Q 047998 333 WAI-STRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKF 411 (558)
Q Consensus 333 ~Gi-~eRli~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~ 411 (558)
|++ ++|++.+|... + ..++ .| .|+| +.+.+ ....|.++++.||++|++|+++..+. ....
T Consensus 316 faiglerL~~~l~~~-----~-~~~~--~~-~v~v-~~~~~------~~~~a~~~a~~LR~~G~~v~~~~~~~--~~~~- 376 (400)
T 3od1_A 316 FGVRIDLLVEALNGE-----I-ISNG--HE-QTCI-LFSNE------RRFEAIELARKKRANGEAVVLQDLAG--VTDV- 376 (400)
T ss_dssp EEEEHHHHHHHHCC--------------CC-CEEE-EECGG------GHHHHHHHHHHHHTTTCCEEEEEGGG--CSCH-
T ss_pred EEeeHHHHHHHHHhc-----C-CCCC--CC-eEEE-EECcH------HHHHHHHHHHHHHHCCCEEEEEecCC--hhHH-
Confidence 777 99999886432 2 1221 12 2554 34432 46788999999999999999997652 2212
Q ss_pred HHHHHcCCCEEEEeCceec
Q 047998 412 NFWEMKGIPLRIEIGPRDV 430 (558)
Q Consensus 412 ~~ae~~GiP~~IiIG~kEl 430 (558)
++..+|+..++.+..++-
T Consensus 377 -~~~~~~~~~~~~~~~~~~ 394 (400)
T 3od1_A 377 -DAMSSNYQDVIYCIGTAG 394 (400)
T ss_dssp -HHHHTTSSEEEEECSCC-
T ss_pred -HHHHcCCCEEEEEecCCC
Confidence 788899999999986664
No 36
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=99.96 E-value=1.1e-29 Score=260.41 Aligned_cols=244 Identities=17% Similarity=0.187 Sum_probs=205.8
Q ss_pred ccccCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCc------
Q 047998 101 LADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGK------ 174 (558)
Q Consensus 101 l~d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~------ 174 (558)
|++...++|++.+.+.+.+|++.|++++++ ..+.||++|.||.|.+.++| ..+||++.|.++||.+..-.+.
T Consensus 47 l~~~~g~~g~y~~~g~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~-e~SGhl~~F~e~mf~v~~~~~d~~e~~~ 124 (346)
T 3mf2_A 47 LFHSMGSDGVYARTALYESIVERLAALITS-HREAGTEALRFPPVMSRAQL-EKSGYLKSFPNLLGCVCGLHGTEREINA 124 (346)
T ss_dssp HEEEEEETTEEEEEHHHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHH-HHTTHHHHCGGGCEEEEEECSCHHHHHH
T ss_pred hhcccCCCceEEecchHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHH-HhcCCcccChhhcceeecccccchhhhh
Confidence 455455899999999999999999999999 88899999999999999999 5599999999999998642110
Q ss_pred -------------cc-cccccccCCCcHHHHHHHHHh-HhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeee
Q 047998 175 -------------EL-EEKLVVRPTSETIVNHMFTQW-IHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAH 239 (558)
Q Consensus 175 -------------~l-~e~l~LRPt~e~~i~~~~~~~-i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~ 239 (558)
.+ ++.++|.||+|++++.+|++. +.+ +.|+++..+++|||+|.+ +|++|+|||+|.|+|+|
T Consensus 125 ll~~~~~~~~~~~~l~~~d~~LiPtacvpl~~~~~~eg~i~--~~plr~~~~g~CFR~EaS-~GL~RvhqF~kvE~v~~- 200 (346)
T 3mf2_A 125 AVSRFDAGGDWTTSLSPADLVLSPAACYPVYPIAASRGPLP--KGGLRFDVAADCFRREPS-KHLDRLQSFRMREYVCI- 200 (346)
T ss_dssp HHHHHHTTSCGGGGEEEEEEEECSSSSTTHHHHHHTTCSCC--TTCEEEEEEEEEECCCCC-SSTTSCSEEEEEEEEEE-
T ss_pred hhhhhccccccccccCCCCEEEcccccHHHHHHHccCCccc--ccCeEEEEECCccCCcCC-CCCeeeeeeEEEEEEEE-
Confidence 01 347999999999999999975 555 459999999999999994 79999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhhCCceEEeecCCchhhccC------------CCcceEEEEEEcC-ccceeecceEec
Q 047998 240 ATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAG------------ASRTYTIEAMMGD-KRALQAGTSHNL 306 (558)
Q Consensus 240 ~~~~~a~~e~~~il~~y~~l~~~~l~ipv~~g~k~~~ekf~G------------a~~~~~ie~~~~d-gr~lq~gti~~L 306 (558)
++++++.+|...+++....++.. |++|+.+-.. .+.|.| +..+|.+|++++. ++..+++++.+.
T Consensus 201 ~tpEqs~~e~e~l~~~ae~il~~-LgLpyrv~~~--~D~~f~~~G~l~~~~Q~~~~~kyDlevw~p~~~~y~EisS~Sn~ 277 (346)
T 3mf2_A 201 GTPDDVSDFRERWMVRAQAIARD-LGLTFRVDYA--SDPFFGRVGQMKAVSQKQQQLKFELLIPLRSEEQPTACMSFNYH 277 (346)
T ss_dssp ESHHHHHHHHHHHHHHHHHHHHH-TTCCCEEEEC--CCCCCHHHHHHHHHHHHHTTCEEEEEECSSCSSSCEEEEEEEEC
T ss_pred eCHHHHHHHHHHHHHHHHHHHHH-CCCCEEEEEc--cCCCcCcccchhhhccccccceEEEEEEcCCCCCeeEEEeeecc
Confidence 89999999999999999999876 8898754322 122322 3568999998875 788899999999
Q ss_pred CcccccccCeEEeCCCCceeeEeeeccch-HHHHHHHHHHHhCCCCCCCCCCC
Q 047998 307 GQNFSLAFGTQFTDENGQRQHVWQTSWAI-STRFVGGIIMTHGDDTGLMLPPR 358 (558)
Q Consensus 307 g~~~s~~f~i~y~d~~g~~~~v~~~s~Gi-~eRli~~lie~~~D~~Gl~lP~~ 358 (558)
++.++++|+|+|.+ | .++|+.|.|+ ++|++.+|+++||+|.- .||..
T Consensus 278 ~dfqarR~~Ir~~~--~--~~vHT~~sglav~R~l~AiLen~G~d~~-~wP~~ 325 (346)
T 3mf2_A 278 REHFGTTWGIQDAN--G--EPAHTGCVAFGMDRLAVAMFHTHGTDLS-AWPAK 325 (346)
T ss_dssp TTHHHHHHTCBCTT--S--SBCEEEEEEEEHHHHHHHHHHHHCSCGG-GSCHH
T ss_pred cchhhhhhcceeCC--C--CeEEEcccchHHHHHHHHHHHHcCCCcc-ccCHH
Confidence 99999999999963 4 4889889988 99999999999998753 67754
No 37
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=99.94 E-value=5.8e-27 Score=244.80 Aligned_cols=153 Identities=11% Similarity=0.063 Sum_probs=131.1
Q ss_pred ccccCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhh-hcCccccCCceEEEEecCCcccccc
Q 047998 101 LADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKE-ASHVEGFSPELALVTIGGGKELEEK 179 (558)
Q Consensus 101 l~d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~-sgh~~~f~~Emy~~~~~g~~~l~e~ 179 (558)
...+..++|++||+|.++.+|++|++.+++.|+++||++|.||+|++.++|.+. ++|++.+.++||.|.|++|+ .
T Consensus 19 ~~~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~g~----~ 94 (344)
T 1z7m_A 19 KINYLLPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQ----S 94 (344)
T ss_dssp ---CCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTTCC----E
T ss_pred hccCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCCCC----E
Confidence 334678999999999999999999999999999999999999999999999652 37888899999999999875 8
Q ss_pred ccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHH
Q 047998 180 LVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTK 258 (558)
Q Consensus 180 l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~ 258 (558)
++|||+.|++++++++.. ++++|+|+||+|+|||+|+++.| |+|||+|+|+|+||.+...+|+|++.++ ++|+.
T Consensus 95 l~LRpd~T~~~aR~~~~~---~~~~P~rl~y~g~vfR~e~p~~g--R~REF~Q~g~ei~g~~~~~aDaEvi~l~~~~l~~ 169 (344)
T 1z7m_A 95 ITLRYDFTLPLVRLYSQI---KDSTSARYSYFGKIFRKEKRHKG--RSTENYQIGIELFGESADKSELEILSLALQVIEQ 169 (344)
T ss_dssp EEECCCSHHHHHHHHHTC---CSCCCEEEEEEEECCCCCC---------CCEEEEEEEESSCHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCcHHHHHHHHhc---CCCCCeEEEEECcEEccCCCCCC--CcceeEEEEEEEEcCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999998775 67899999999999999998889 9999999999999999999999988876 78887
Q ss_pred HHHh
Q 047998 259 FAYE 262 (558)
Q Consensus 259 l~~~ 262 (558)
++.+
T Consensus 170 lgl~ 173 (344)
T 1z7m_A 170 LGLN 173 (344)
T ss_dssp HTCS
T ss_pred CCCC
Confidence 7653
No 38
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=99.93 E-value=3.8e-26 Score=240.94 Aligned_cols=163 Identities=12% Similarity=0.060 Sum_probs=132.3
Q ss_pred HHHHHHHHHhccccccCCCCcceEeCchhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccC-CceEE
Q 047998 89 NAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFS-PELAL 167 (558)
Q Consensus 89 ~~wy~~~~~~a~l~d~~~vkG~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~-~Emy~ 167 (558)
+-|..++-+.. ...++.++|++||+|.++.+|+.|++.+++.|+++||++|.||+|++.++|.+ ++ +.+. ++||.
T Consensus 9 ~~~~~~~~~~~-~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~-~g--~~~~~~~my~ 84 (373)
T 3rac_A 9 SAWGARAWEAV-RGFADRPPGMQDGYPDFAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLR-AR--SPESSRDWIR 84 (373)
T ss_dssp ---------CC-CCCCCCCTTCCCCCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHT-TS--CTTSCCCCCB
T ss_pred CHHHHHHHHHH-HhcCCCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhh-cC--CccchhceEE
Confidence 56777766543 22356799999999999999999999999999999999999999999999966 44 4567 89999
Q ss_pred EEecCCccccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC------CCCccccceEEEecceeeeCC
Q 047998 168 VTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR------TKPFVRTLEFLWQEGHTAHAT 241 (558)
Q Consensus 168 ~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~------~rGllR~REF~q~d~h~~~~~ 241 (558)
|.|.+|+ .++|||+.|+++++++++...+ +++|+|+||+|+|||+|++ +.| |+|||+|.|+|+||..
T Consensus 85 ~~D~~g~----~l~LRpd~T~~~aR~~~~~~~~-~~~P~r~~y~g~vfR~e~~g~~~~~~~g--R~ReF~Q~g~ei~g~~ 157 (373)
T 3rac_A 85 LFDGGGD----AVALRPEMTPSIARMAAPRVAA-GRTPIRWCYCERVYRRTDDPASLSWASG--KAAESTQVGIERIGEE 157 (373)
T ss_dssp CCCCSSS----CEEECSSSHHHHHHHHHHHHHT-TCCCCEEEEEEEEEECC--------------CEEEEEEEEEECSSC
T ss_pred EECCCCC----EEEECCcCHHHHHHHHHhcccc-CCCCeEEEEEcceEccCCCcccccccCC--ccceeEEeeeEEECCC
Confidence 9999875 8999999999999999887654 7899999999999999999 778 9999999999999988
Q ss_pred -hHHHHHHHHHHH-HHHHHHHHh
Q 047998 242 -PEEAEKEAMQMI-DIYTKFAYE 262 (558)
Q Consensus 242 -~~~a~~e~~~il-~~y~~l~~~ 262 (558)
...+|+|++.++ ++|+.++.+
T Consensus 158 d~~~aDaEvi~l~~~~l~~lgl~ 180 (373)
T 3rac_A 158 ASVDVDMDVLRLLHEASAAAGVR 180 (373)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCC
Confidence 889999998887 889888753
No 39
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=99.72 E-value=5.8e-18 Score=171.46 Aligned_cols=116 Identities=12% Similarity=0.068 Sum_probs=99.0
Q ss_pred HHHHHHHH--HHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHHhHh
Q 047998 122 EAIQDYLN--VKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIH 199 (558)
Q Consensus 122 ~~I~~~i~--~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i~ 199 (558)
+.|+++++ +.++++||++|.||+|++.++|.+ + .|.|.+|+ .++|||+.|++++ ++..
T Consensus 4 ~~le~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~----------d--~f~d~~g~----~l~LRpd~T~~~a---~~~~- 63 (275)
T 1usy_A 4 LDFEKVFSFYSKATKKGFSPFFVPALEKAEEPAG----------N--FFLDRKGN----LFSIREDFTKTVL---NHRK- 63 (275)
T ss_dssp CCHHHHHHHHHHHHHTTCEECCCCSEEECSSCCS----------S--CEEETTSC----EEEECCCHHHHHH---HHHT-
T ss_pred HhHHHHHHHHHHHHHCCCEEecCccccchhhhcc----------c--ccCCCCCC----EEEeCCcChHHHH---HHHh-
Confidence 35777777 999999999999999999999943 1 34677774 8999999999998 3333
Q ss_pred hcCC-CCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHHHHh
Q 047998 200 SYRD-LPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKFAYE 262 (558)
Q Consensus 200 s~rd-LPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l~~~ 262 (558)
.+++ +|+|+||+|+|||+|+++. |||+|+|+|+|+.....+|+|++.++ ++|+.++.+
T Consensus 64 ~~~~~~p~R~~y~g~vfR~e~~~~-----Ref~Q~g~ei~g~~~~~~DaEvi~l~~~~l~~lgl~ 123 (275)
T 1usy_A 64 RYSPDSQIKVWYADFVYRYSGSDL-----VAEYQLGLEKVPRNSLDDSLEVLEIIVESASEFFEG 123 (275)
T ss_dssp TCTTCCCEEEECCEEEEEEETTEE-----EEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHHCCS
T ss_pred hcCCCCceEEEEeceEEecCCCCC-----CeeeEeCEEEecCCCchhHHHHHHHHHHHHHHcCCC
Confidence 3667 9999999999999999975 99999999999998889999999887 889888753
No 40
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=99.66 E-value=2e-16 Score=141.12 Aligned_cols=100 Identities=14% Similarity=0.104 Sum_probs=88.5
Q ss_pred CCCcEEEEeCCCCcchhHHHHHHHHHHHHHHhhCCcEEEEeCC--CCCCHHHHHHHHHHcCCCEEEEeCceecCCCeEEE
Q 047998 360 APIQVVIVPIWKKADEKTGVLSAALSAKEVLQKSGIRVKLDDS--DQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVI 437 (558)
Q Consensus 360 AP~qV~Iipi~~~~~~~~~~~~~a~~I~~~Lr~~Girv~vD~r--~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~I 437 (558)
-|.||.|+|++++ ..+||.+|.+.|+++|+||++|++ + .++|+|++++.+.+|||+|+||++|+++|+|+|
T Consensus 7 ~P~Qv~IlpVs~~------~~~YA~~V~~~L~~~GiRvevD~~r~~-e~Lg~kIR~a~~~kvPy~lVVG~kE~e~~sVsV 79 (130)
T 1v95_A 7 GPVDCSVIVVNKQ------TKDYAESVGRKVRDLGMVVDLIFLNTE-VSLSQALEDVSRGGSPFAIVITQQHQIHRSCTV 79 (130)
T ss_dssp CCCTEEEEESSSG------GGHHHHHHHHHHHTTTCCEEEEECTTS-SCHHHHHHHHHHHTCSEEEEECHHHHHHTEEEE
T ss_pred CCCeEEEEEeCcc------hHHHHHHHHHHHHHCCCEEEEecCCCC-CcHHHHHHHHHHcCCCEEEEEechHHhcCeeEE
Confidence 4899999999864 689999999999999999999996 6 499999999999999999999999999999999
Q ss_pred EEcCC--CCccccccccccChHHHHHHHHHHHHHHHH
Q 047998 438 SRRDV--PGKQGKVFGISMEPSILEAYVKDKLDEIQS 472 (558)
Q Consensus 438 k~rdt--~ek~~~~~~v~v~~~el~~~i~~ll~~~~~ 472 (558)
+.|.. ++.. .++++++++.|..-+..+..
T Consensus 80 R~r~~~~~e~~------~m~lde~i~~l~~~~~~~~~ 110 (130)
T 1v95_A 80 NIMFGTPQEHR------NMPQADAMVLVARNYERYKN 110 (130)
T ss_dssp EECSSSCCEEE------EEEHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCCccC------ccCHHHHHHHHHHHHHHHhh
Confidence 99986 3333 68999999888777766654
No 41
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.58 E-value=3.4e-15 Score=151.97 Aligned_cols=134 Identities=16% Similarity=0.124 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHHh
Q 047998 118 YAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQW 197 (558)
Q Consensus 118 ~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~ 197 (558)
...++++++.+++.|..+||++|.||.|++.++|.+ ++|++. .+||.+.+. +++.++|||+.++.+..+++..
T Consensus 70 ~h~~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~-~g~~~~--~~m~~~~np----l~e~~~LRp~l~p~l~~~~r~~ 142 (288)
T 3dsq_A 70 RPALLELEEKLAKALHQQGFVQVVTPTIITKSALAK-MTIGED--HPLFSQVFW----LDGKKCLRPMLAPNLYTLWREL 142 (288)
T ss_dssp SCHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHT-TSSCC----CCTTTSCE----EETTEEECSCSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHhh-cCCCcc--cccEEeecc----cccchhhhhcChHHHHHHHHHH
Confidence 345799999999999999999999999999999854 677642 144432211 1236899999999999888877
Q ss_pred HhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHHHH
Q 047998 198 IHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKFAY 261 (558)
Q Consensus 198 i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l~~ 261 (558)
+.+ +++|+|+|++|+|||+|.+..+ |+|||+|.|++++|........++..++ ++++.++.
T Consensus 143 ~~~-~~~PlrlfeiG~vFR~E~~~~~--r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~~LGl 204 (288)
T 3dsq_A 143 ERL-WDKPIRIFEIGTCYRKESQGAQ--HLNEFTMLNLTELGTPLEERHQRLEDMARWVLEAAGI 204 (288)
T ss_dssp TTT-SCSCEEEEEEEEEECSCCSSSC--CCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHHHHTC
T ss_pred HhC-CCCCEEEEEEeeEEecCCCCCC--cCccEEEEEEEEEcCCchhhHHHHHHHHHHHHHHcCC
Confidence 665 7899999999999999999766 9999999999999876555667777666 56666653
No 42
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.24 E-value=3.2e-11 Score=122.76 Aligned_cols=125 Identities=15% Similarity=0.172 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCcc--ccCCceEEEEecCCccccccccccCCCcHHHHHHHHHhH
Q 047998 121 WEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVE--GFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWI 198 (558)
Q Consensus 121 ~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~--~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~~i 198 (558)
+.++.+.+++.|...||+||.||+|++.+.|.+ .+... .+.++||.+. +..+|||+.++.++..++..+
T Consensus 79 ~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~-~~~~~~~p~~~~~~~~~--------~~~~LR~slsp~L~~~l~~n~ 149 (290)
T 3qtc_A 79 LGKLEREITRFFVDRGFLEIKSPILIPLEYIER-MGIDNDTELSKQIFRVD--------KNFCLRPMLTPNLYNYLRKLD 149 (290)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCSEEETHHHHH-TTCCTTSSGGGGCCEET--------TTEEECSCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCEEEECCceeeHHHHHh-cCCCcCCchhhhheeeC--------CCeeEcccChHHHHHHHHHhh
Confidence 688999999999999999999999999998744 33221 2456788772 369999999999988776643
Q ss_pred hhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHH
Q 047998 199 HSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKF 259 (558)
Q Consensus 199 ~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l 259 (558)
++..+|+|+|++|+|||+|..+.+ |.+||+|.|++.+|.+.. ..++..++ ++++.+
T Consensus 150 -~~~~~p~rlfeiG~vFR~E~~~~~--~~~Ef~ql~~~~~g~~~~--f~elkg~le~ll~~l 206 (290)
T 3qtc_A 150 -RALPDPIKIFEIGPCYRKESDGKE--HLEEFTMLVFWQMGSGCT--RENLESIITDFLNHL 206 (290)
T ss_dssp -TTSCSSEEEEEEEEEECCCSCSSS--CCSEEEEEEEEEESTTCC--HHHHHHHHHHHHHHH
T ss_pred -ccCCCCeEEEEEcCEEecCCCCCc--CcchheEEEEEEEcCChH--HHHHHHHHHHHHHHc
Confidence 346899999999999999987767 999999999999986643 34444444 344444
No 43
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=99.08 E-value=4.5e-10 Score=114.51 Aligned_cols=122 Identities=20% Similarity=0.122 Sum_probs=89.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCeeeecCccccH-hhHhhh-hcCccccCCceEEEEecCCccccccccccCCCcHHHH
Q 047998 114 RPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPY-SFIEKE-ASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVN 191 (558)
Q Consensus 114 lP~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~-~l~~k~-sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~ 191 (558)
...-+++|..|.+.+++.|.++||.+|.||+|++. +++.+. .+ ++ .++|.+...+ ..++|+...+.
T Consensus 11 ~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~--e~--a~~f~~~~~~-----~~~~L~~Spe~--- 78 (294)
T 1nnh_A 11 ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAG--EG--MEPAEVEIYG-----VKMRLTHSMIL--- 78 (294)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTC--CC--CCCCEEEETT-----EEEEECSCSHH---
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCC--Cc--ceeEEEEcCC-----CCEEeccChHH---
Confidence 34568899999999999999999999999999998 877554 33 23 5677765332 36888754442
Q ss_pred HHHHHhHhhcCCCCeEEEEEeeeeecCCCCC--Cccccc-eEEEecceeeeCChHHHHHHHHHHH
Q 047998 192 HMFTQWIHSYRDLPLLVNQWANVTRWEMRTK--PFVRTL-EFLWQEGHTAHATPEEAEKEAMQMI 253 (558)
Q Consensus 192 ~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~r--GllR~R-EF~q~d~h~~~~~~~~a~~e~~~il 253 (558)
+.+..... -|.|+||+|+|||+|.||. + |.+ ||+|.|++.++++..+....+..++
T Consensus 79 --~~~~l~~~--g~~rvf~ig~~FR~E~pq~~~~--RH~~EFtqle~e~~~~~~~~l~~~~e~l~ 137 (294)
T 1nnh_A 79 --HKQLAIAM--GLKKIFVLSPNIRLESRQKDDG--RHAYEFTQLDFEVERAKMEDIMRLIERLV 137 (294)
T ss_dssp --HHHHHHHT--TCCEEEEEEEEECCCCGGGCSS--SCCSEEEEEEEEEETCCHHHHHHHHHHHH
T ss_pred --HHHHHhhc--CccceEEEEccEeCCCCCCCCC--ccccceeEEEEEecCCCHHHHHHHHHHHH
Confidence 22322221 2789999999999999864 7 998 9999999999987544444433333
No 44
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=98.79 E-value=3.5e-08 Score=105.48 Aligned_cols=120 Identities=17% Similarity=0.154 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHH
Q 047998 116 YGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFT 195 (558)
Q Consensus 116 ~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~ 195 (558)
.-++++..|.+.+++.|...||.+|.||+|++. .++ + ..+||.+... | +.++|+-..+...-.
T Consensus 132 ~~~~~rs~i~~~ir~ff~~~gF~eV~TP~l~~~------~~e--~-~~~~f~~~~~-~----~~~~L~~Spql~~~~--- 194 (429)
T 1wyd_A 132 AVIKIQSLALKAFRETLYKEGFIEIFTPKIIAS------ATE--G-GAQLFPVIYF-G----KEAFLAQSPQLYKEL--- 194 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESS------CSS--T-TCCCCEEEET-T----EEEEECSCCHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHhhCCCEEEECCEEEee------CCC--C-CceeEEEecC-C----ceEEecCCcHHHHHH---
Confidence 457889999999999999999999999999865 111 1 3478877543 3 379998444432222
Q ss_pred HhHhhcCCCCeEEEEEeeeeecCCCCCCccccc-eEEEecceeeeCChHHHHHHHHHHH-HHHHHH
Q 047998 196 QWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTL-EFLWQEGHTAHATPEEAEKEAMQMI-DIYTKF 259 (558)
Q Consensus 196 ~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~R-EF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l 259 (558)
+.+. +-|+||+|+|||+|.+..+ |-+ ||+|.|++.++++..+....+..++ .+++.+
T Consensus 195 --~~~g---~~rvf~ig~~FR~E~~~~~--RH~pEFtqle~e~~~~~~~dlm~~~e~ll~~l~~~~ 253 (429)
T 1wyd_A 195 --MAGV---VERVFEVAPAWRAEESDTP--FHLAEFISMDVEMAFADYNDVMQLLEKILHNIVKTI 253 (429)
T ss_dssp --HHHH---HSEEEEEEEEECCCCCCSS--SCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHH
T ss_pred --HHhC---cCceEEEcccccccCCccc--cccceeeEeeeeecCCCHHHHHHHHHHHHHHHHHHH
Confidence 2221 6799999999999999778 888 9999999999988655555555444 344433
No 45
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=98.77 E-value=4.3e-08 Score=105.00 Aligned_cols=114 Identities=15% Similarity=0.017 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHH
Q 047998 116 YGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFT 195 (558)
Q Consensus 116 ~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~ 195 (558)
.-++++..|.+.+++.|..+||.+|.||+|+.. .++ + +.+||.+.. .| +.++|| +|-... .
T Consensus 133 ~~~~~rs~i~~~ir~~f~~~gF~eVeTP~l~~~------~~e--~-~~~~f~~~~-~~----~~~~Lr-~Spel~----~ 193 (434)
T 1x54_A 133 AIMKVKETLIMAAREWLLKDGWHEVFPPILVTG------AVE--G-GATLFKLKY-FD----KYAYLS-QSAQLY----L 193 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESC------CSS--C-GGGCCEEEE-TT----EEEEEC-SCSHHH----H
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCcEEEee------cCC--C-CceeEEEee-cC----CcEEec-cChHHH----H
Confidence 467899999999999999999999999999855 121 1 347787754 33 379999 322221 1
Q ss_pred HhHhhcCCCCeEEEEEeeeeecCCCCCCccccc-eEEEecceeeeCChHHHHHHHHHHH
Q 047998 196 QWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTL-EFLWQEGHTAHATPEEAEKEAMQMI 253 (558)
Q Consensus 196 ~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~R-EF~q~d~h~~~~~~~~a~~e~~~il 253 (558)
+.+.+ -|.|+||+|+|||+|.+..+ |-+ ||+|.|++.++++..+....+..++
T Consensus 194 ~~~~~---g~~rvf~ig~~FR~E~~~~~--RH~pEFtqle~e~~~~~~~dlm~~~e~ll 247 (434)
T 1x54_A 194 EAAIF---GLEKVWSLTPSFRAEKSRTR--RHLTEFWHLELEAAWMDLWDIMKVEEELV 247 (434)
T ss_dssp HHHHH---HHSEEEEEEEEECCCCCCCS--SCCSEEEEEEEEEETCCHHHHHHHHHHHH
T ss_pred HHHhc---CccceEEEecceecCCCCCc--ccccEEEEeeEEEcCCCHHHHHHHHHHHH
Confidence 21222 27799999999999999778 898 9999999999988655555555544
No 46
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=98.69 E-value=9.2e-08 Score=103.82 Aligned_cols=121 Identities=13% Similarity=0.072 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHH
Q 047998 116 YGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFT 195 (558)
Q Consensus 116 ~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~ 195 (558)
.-+++|..|.+.+++.|...||.||.||+|++.. ++ + ..++|.+... | ..++||-..+- +.
T Consensus 176 ~~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~-----~~---~-ga~~f~~~~~-~----~~~~L~~Spql-----~~ 236 (487)
T 1eov_A 176 AIFRIQAGVCELFREYLATKKFTEVHTPKLLGAP-----SE---G-GSSVFEVTYF-K----GKAYLAQSPQF-----NK 236 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----SS---S-SSCCCEEEET-T----EEEEECSCTHH-----HH
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEec-----CC---C-CcccceeccC-C----ccEEcccChHH-----HH
Confidence 4568899999999999999999999999998753 11 1 2368888763 3 37999944442 22
Q ss_pred HhHhhcCCCCeEEEEEeeeeecCCCCCCccccc-eEEEeccee-eeCChHHHHHHHHHHH-HHHHHH
Q 047998 196 QWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTL-EFLWQEGHT-AHATPEEAEKEAMQMI-DIYTKF 259 (558)
Q Consensus 196 ~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~R-EF~q~d~h~-~~~~~~~a~~e~~~il-~~y~~l 259 (558)
+.+.. .-+-|+||+|+|||+|.++.+ |.+ ||+|.|++. |+.+.++..+.+..++ .+++.+
T Consensus 237 k~l~~--~g~~rvy~ig~~FR~E~~~~~--Rh~pEFt~le~e~af~~~~~dlm~l~E~ll~~l~~~v 299 (487)
T 1eov_A 237 QQLIV--ADFERVYEIGPVFRAENSNTH--RHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSEL 299 (487)
T ss_dssp HHHHH--TTCCEEEEEEEEECCCCCCCT--TCCSEEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh--cCCCceEEEeccEecCCCCCC--ccchhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 33211 125699999999999999778 998 999999997 4445666555555555 344444
No 47
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=98.67 E-value=5.8e-08 Score=103.58 Aligned_cols=120 Identities=12% Similarity=0.110 Sum_probs=59.2
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHH
Q 047998 116 YGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFT 195 (558)
Q Consensus 116 ~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~ 195 (558)
.-++++..|.+.+++.|..+||.+|.||+|++... -+ ..+||.+.. .| +.++||-..+-. ..++.
T Consensus 123 ~~~~~rs~i~~~ir~~f~~~gF~EV~TPil~~~~~----e~-----~~~~f~~~~-~g----~~~~L~~Spel~-~~~l~ 187 (422)
T 1n9w_A 123 APLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGA----EG-----GSGLFGVDY-FE----KRAYLAQSPQLY-KQIMV 187 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCC------------------------------------------CHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEeCC----CC-----CceeEEEee-CC----CcEEeeeCHHHH-HHHHh
Confidence 45688999999999999999999999999986521 11 235777643 33 368997333322 12222
Q ss_pred HhHhhcCCCCeEEEEEeeeeecCCCCCCccccc-eEEEecceeeeC-ChHHHHHHHHHHH-HHHHHH
Q 047998 196 QWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTL-EFLWQEGHTAHA-TPEEAEKEAMQMI-DIYTKF 259 (558)
Q Consensus 196 ~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~R-EF~q~d~h~~~~-~~~~a~~e~~~il-~~y~~l 259 (558)
+ . +-|+||+|+|||+|.+..+ |-+ ||+|.|++.+++ +.++..+.+..++ .+++.+
T Consensus 188 ----~--g-~~rvf~ig~~FR~E~~~~~--RH~pEFtqle~e~~~~~d~~dlm~l~e~ll~~l~~~~ 245 (422)
T 1n9w_A 188 ----G--V-FERVYEVAPVWRMEEHHTS--RHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEA 245 (422)
T ss_dssp ----H--H-HSEEEEEEEC---------------CCEEEEEEEESCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ----h--C-CCceeEEeCceECCCCCCC--cccceeEEeeeeeeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1 1 3699999999999999878 998 999999999998 7655555555544 344443
No 48
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=98.65 E-value=1.8e-07 Score=101.50 Aligned_cols=121 Identities=16% Similarity=0.043 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEe-cCCccccccccccCCCcHHHHHHHH
Q 047998 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTI-GGGKELEEKLVVRPTSETIVNHMFT 195 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~-~g~~~l~e~l~LRPt~e~~i~~~~~ 195 (558)
-++++..|.+.+++.|...||.||.||+|.+.. .| -..++|.+.. ..| .+++||-..+ +|.
T Consensus 173 ~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~-----~G----a~a~~F~~~~~~~~----~~~yLr~Spq-----Lyl 234 (493)
T 3a74_A 173 TFITRSLIIQSMRRYLDSHGYLEVETPMMHAVA-----GG----AAARPFITHHNALD----MTLYMRIAIE-----LHL 234 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----CS----SSSCCCEEEETTTT----EEEEECSCSH-----HHH
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEECCeEEecC-----CC----CcccceEecccCCC----ceeEEecCHH-----HHH
Confidence 467899999999999999999999999998541 22 1246777763 333 4799994333 333
Q ss_pred HhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHH
Q 047998 196 QWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKF 259 (558)
Q Consensus 196 ~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l 259 (558)
+.+.. .-.-|+||+|++||+|..... |..||+|.|++.++++.++....+..++ .+++.+
T Consensus 235 k~l~v--~G~~rVyeig~~FR~E~~~~r--H~pEFT~lE~e~af~d~~dlm~l~E~ll~~l~~~v 295 (493)
T 3a74_A 235 KRLIV--GGLEKVYEIGRVFRNEGISTR--HNPEFTMLELYEAYADFRDIMKLTENLIAHIATEV 295 (493)
T ss_dssp HHHHH--TTCCEEEEEEEEECCCCCBTT--BCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhh--cccCceEEECccccCCCCCcc--cCCceeEEEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 43221 124699999999999999666 9999999999999998666665555554 344444
No 49
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=98.51 E-value=4.3e-07 Score=94.39 Aligned_cols=120 Identities=15% Similarity=0.033 Sum_probs=84.1
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecC-CccccccccccCCCcHHHHHHH
Q 047998 116 YGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGG-GKELEEKLVVRPTSETIVNHMF 194 (558)
Q Consensus 116 ~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g-~~~l~e~l~LRPt~e~~i~~~~ 194 (558)
.-++++..|.+.+|+.|...||.||.||+|.+..- + +-..+.|.+..-+ ++.++.+++|+-..+ ++
T Consensus 34 ~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~-----~---~a~~~~F~~~~~~~~~~~~~~~yL~~Spq-----l~ 100 (345)
T 3a5y_A 34 PNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATV-----T---DIHLVPFETRFVGPGHSQGMNLWLMTSPE-----YH 100 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCC-----C---CTTCCCCEEEECCSTTSCCEEEEECSCSH-----HH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCC-----C---CCccceEEEEecCcccccCCCEeecCCHH-----HH
Confidence 35788999999999999999999999999975431 1 1123455554332 121223677876655 33
Q ss_pred HHh-HhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH
Q 047998 195 TQW-IHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI 253 (558)
Q Consensus 195 ~~~-i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il 253 (558)
.+. +.+ .+ =|+||||+|||+|..++- |..||+|.|.+..+++.++....+..++
T Consensus 101 ~k~l~~~--g~-~rvyqIg~~FR~E~~~~r--H~pEFt~lE~e~af~d~~d~m~~~E~li 155 (345)
T 3a5y_A 101 MKRLLVA--GC-GPVFQLCRSFRNEEMGRY--HNPEFTMLEWYRPHYDMYRLMNEVDDLL 155 (345)
T ss_dssp HHHHHHT--TC-CSEEEEEEEECCCCCBTT--BCSEEEEEEEEEETCCHHHHHHHHHHHH
T ss_pred HHHHHHc--CC-CcEEEEEcceeCCCCccc--ccchhheeeeeeeCCCHHHHHHHHHHHH
Confidence 332 222 23 299999999999999666 9999999999999988766655555444
No 50
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=98.42 E-value=1.6e-06 Score=94.30 Aligned_cols=121 Identities=12% Similarity=0.056 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHH
Q 047998 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQ 196 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~ 196 (558)
-++++.+|.+.+|+.|...||.||.||+|.+.. .| =..++|.+.... ++.+++||-..+ +|.+
T Consensus 182 ~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~~-----~G----a~ar~F~t~~~~---~~~~~yL~~Spq-----Lylk 244 (504)
T 1e1o_A 182 TFVVRSKILAAIRQFMVARGFMEVETPMMQVIP-----GG----ASARPFITHHNA---LDLDMYLRIAPE-----LYLK 244 (504)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEECCCCSEESSC-----CS----SCCCCCEEEETT---TTEEEEECSCSH-----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEEecC-----CC----CcccceEeccCC---CCceEEeccCHH-----HHHH
Confidence 467899999999999999999999999997541 22 123567665321 134799995444 3333
Q ss_pred hH-hhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHH
Q 047998 197 WI-HSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKF 259 (558)
Q Consensus 197 ~i-~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l 259 (558)
.+ .+ . .=|+||+|++||+|..... |..||+|.|++.++++.++....+..++ .+++.+
T Consensus 245 ~L~v~--G-~~rVyeIg~~FR~E~~~~r--H~pEFt~lE~e~af~d~~dlm~l~E~li~~~~~~v 304 (504)
T 1e1o_A 245 RLVVG--G-FERVFEINRNFRNEGISVR--HNPEFTMMELYMAYADYHDLIELTESLFRTLAQEV 304 (504)
T ss_dssp HHHHH--T-CCEEEEEEEEECCCCCCC---CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhc--C-CCcEEEEcccccCCCCCcc--ccCceeeeeeeecCCCHHHHHHHHHHHHHHHHHHH
Confidence 32 22 1 2599999999999999655 9999999999999998777666655555 344444
No 51
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=98.24 E-value=4.2e-06 Score=89.61 Aligned_cols=120 Identities=16% Similarity=0.148 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHH
Q 047998 116 YGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFT 195 (558)
Q Consensus 116 ~g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~ 195 (558)
.-++++..|.+.+|+.|...||.||.||+|..... .|+ .++|.+.--| ..++|+-..+ +|.
T Consensus 130 ~~~r~Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~~----eG~-----~~~F~~~~~g-----~~~~L~~Spq-----Lyl 190 (435)
T 2xgt_A 130 ALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQV----EGG-----STLFNLDYFG-----EQSFLTQSSQ-----LYL 190 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCS----SCT-----TSCCEEEETT-----EEEEECSCSH-----HHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeEeeccC----CCc-----hhceeeccCC-----cccccCCChH-----HHH
Confidence 46789999999999999999999999999965532 122 2345554322 3678875544 233
Q ss_pred HhHhhcCCCCeEEEEEeeeeecCCCCCCccccc-eEEEecceeeeCChHHHHHHHHHHH-HHHHHH
Q 047998 196 QWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTL-EFLWQEGHTAHATPEEAEKEAMQMI-DIYTKF 259 (558)
Q Consensus 196 ~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~R-EF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l 259 (558)
+.+.. .+ =|+||+|+|||+|..... |-. ||+|.|.+..+++.++....+..++ .+++.+
T Consensus 191 q~l~~--g~-~rvfeIg~~FR~E~~~t~--RH~~EFT~lE~e~af~d~~d~m~~~E~li~~~~~~v 251 (435)
T 2xgt_A 191 ETCIP--TL-GDVFCIAQSYRAEKSRTR--RHLAEYAHVEAECPFITLDDLMEKIEELVCDTVDRL 251 (435)
T ss_dssp HHHHH--HH-CSEEEEEEEECCCSSCCT--TCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhh--cc-CceEEEecceecCCCCcc--ccccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHH
Confidence 33222 11 389999999999997444 665 9999999999999877777666665 444444
No 52
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=98.20 E-value=9.9e-06 Score=86.67 Aligned_cols=121 Identities=17% Similarity=0.136 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHH
Q 047998 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQ 196 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~ 196 (558)
-++++..|.+.+|+.|...||.||.||+|.+... -|+ .++|.+..-| .+++|+...+ ++.+
T Consensus 136 ~~~~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~----eg~-----~~~f~~~~~~-----~~~yL~~Spq-----l~~q 196 (438)
T 3nem_A 136 IFKIRSSVFKAVRDFFHENGFIEIHTPKIIATAT----EGG-----TELFPMKYFE-----EDAFLAQSPQ-----LYKQ 196 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCS----SCS-----SSCCEEEETT-----EEEEECSCSH-----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCcEEEeCCEEecCCC----CCC-----ccceeEeeCC-----ccEEEecChH-----HHHH
Confidence 5788999999999999999999999999976531 122 3466665543 3688986655 3444
Q ss_pred hHhhcCCCCeEEEEEeeeeecCCCCCCcccc-ceEEEecceeeeCC-hHHHHHHHHHHH-HHHHHHH
Q 047998 197 WIHSYRDLPLLVNQWANVTRWEMRTKPFVRT-LEFLWQEGHTAHAT-PEEAEKEAMQMI-DIYTKFA 260 (558)
Q Consensus 197 ~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~-REF~q~d~h~~~~~-~~~a~~e~~~il-~~y~~l~ 260 (558)
.+... .+ =|+||+|++||+|....+ |- -||+|.|++..+++ .++....+..++ .+++.+.
T Consensus 197 ~l~~~-g~-~rvf~i~~~FR~E~~~t~--RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~~~~~v~ 259 (438)
T 3nem_A 197 IMMAS-GL-DRVYEIAPIFRAEEHNTT--RHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVR 259 (438)
T ss_dssp HGGGT-TC-CEEEEEEEEECCCSSCCT--TCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhc-CC-CceEEEcceEECCCCCCc--ccccceeeeeeeeccCccHHHHHHHHHHHHHHHHHHHH
Confidence 33211 22 499999999999998544 55 49999999999998 888777777666 4555543
No 53
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=97.99 E-value=5.3e-05 Score=82.79 Aligned_cols=123 Identities=16% Similarity=0.123 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHH
Q 047998 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQ 196 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~ 196 (558)
-++++..|.+.+|+.|...||.||.||+|.+.. .| -..+.|.+.+. -++.+++||-..+ ++.+
T Consensus 175 ~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~-----gG----a~a~~F~t~~~---~~~~~~yL~~Spq-----L~lk 237 (521)
T 3bju_A 175 KFIIRSKIITYIRSFLDELGFLEIETPMMNIIP-----GG----AVAKPFITYHN---ELDMNLYMRIAPE-----LYHK 237 (521)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----CS----SSCCCCEEEET---TTTEEEEECSCSH-----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCceeeccC-----CC----ccccceeeecc---cCCcceEeeCCHH-----HHHH
Confidence 356778899999999999999999999997531 12 12345544322 1235789986665 3333
Q ss_pred hHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHHH
Q 047998 197 WIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKFA 260 (558)
Q Consensus 197 ~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l~ 260 (558)
.+.. ..+ =|+||+|++||+|..-. .+.-||+|.|.+..+++.++....+..++ .+++.+.
T Consensus 238 ~liv-~g~-~rVyeig~~FR~E~~~t--rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~ 298 (521)
T 3bju_A 238 MLVV-GGI-DRVYEIGRQFRNEGIDL--THNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHIT 298 (521)
T ss_dssp HHHH-TTC-CEEEEEEEEECCSCCBT--TBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh-cCc-CceEEEEcceeCCCCCC--ccchhhhhhhhhhhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 3221 123 38999999999998832 27789999999999998877776666665 4555553
No 54
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=97.94 E-value=0.00015 Score=78.86 Aligned_cols=60 Identities=13% Similarity=0.058 Sum_probs=49.1
Q ss_pred cccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCC-CCCccccceEEEecceeeeCC
Q 047998 179 KLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEFLWQEGHTAHAT 241 (558)
Q Consensus 179 ~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~-~rGllR~REF~q~d~h~~~~~ 241 (558)
..+|||+..+++....+... +++..|+++|++|+|||.|.. +.+ +.+||+|.++-..|..
T Consensus 180 ~svLRTsLlPgLL~~lr~N~-~r~~~pvrLFEIG~VFr~d~~~d~t--h~~Ef~qLagli~G~~ 240 (534)
T 2du3_A 180 TLTLRSHMTTGWFITLSHIA-DKLPLPIKLFSIDRCFRREQGEDAT--RLYTYFSASCVLVDEE 240 (534)
T ss_dssp EEEECSSHHHHHHHHHHTTT-TTSCSSEEEEEEEEEECCCTTCSSS--CCSEEEEEEEEEECSS
T ss_pred ccccCccchhhHHHHHHHHH-hCCCCCeeEEEEeeEEecCcccccc--ccceeeEEEEEEECCC
Confidence 37899999988877666553 455789999999999998876 555 7799999999999753
No 55
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=97.93 E-value=9.7e-05 Score=80.54 Aligned_cols=121 Identities=11% Similarity=0.038 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHH
Q 047998 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQ 196 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~ 196 (558)
-++++..|.+.+|+.|...||.||.||+|.+.. .| =..+.|..... .++.+++|+-..+ ++.+
T Consensus 203 ~fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~~-----gG----A~a~pF~t~~n---~~~~~~yL~~Spq-----Lylk 265 (529)
T 4ex5_A 203 TFRARTKAIASIRKFMGDADFMEVETPMLHPIP-----GG----AAAKPFVTHHN---ALDMEMFLRIAPE-----LYLK 265 (529)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----CS----SSSCCCEEEET---TTTEEEEECSCSH-----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCeeeccC-----CC----Ccccccccccc---cCCcceecccCHH-----HHHH
Confidence 357788999999999999999999999997431 22 11234433221 1235788886554 3433
Q ss_pred hH-hhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHH
Q 047998 197 WI-HSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKF 259 (558)
Q Consensus 197 ~i-~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l 259 (558)
.+ .+ .+ =|+||||++||+|.... -+.-||+|.|.+..+++.++....+..++ .+++.+
T Consensus 266 ~L~v~--G~-~rVyeIg~~FR~E~~~~--rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v 325 (529)
T 4ex5_A 266 RLIVG--GF-ERVFEINRNFRNEGVSP--RHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDA 325 (529)
T ss_dssp HHHHT--TC-SEEEEEEEEECCSCCBT--TBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhc--CC-CcEEEeehheecCCCCC--CcccHhHhhhhhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 32 22 22 49999999999999843 37889999999999998877776666665 455554
No 56
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=97.92 E-value=6e-05 Score=83.51 Aligned_cols=119 Identities=16% Similarity=0.164 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEec--CCccccccccccCCCcHHHHHHH
Q 047998 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIG--GGKELEEKLVVRPTSETIVNHMF 194 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~--g~~~l~e~l~LRPt~e~~i~~~~ 194 (558)
-++++..|.+.+|+.|...||.||.||+|....- +|- .+ |.+... .| +-++|+-..+ +|
T Consensus 137 ~l~~Rs~i~~~iR~fl~~~gFlEVeTPiL~~s~~--------eGA-r~-F~v~~~~~~~----~~y~L~qSPQ-----l~ 197 (585)
T 1c0a_A 137 RLKTRAKITSLVRRFMDDHGFLDIETPMLTKATP--------EGA-RD-YLVPSRVHKG----KFYALPQSPQ-----LF 197 (585)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS--------SSS-CC-CEEECSSSTT----CEEECCSCSH-----HH
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCC--------CCC-cc-ceecccccCC----ceEeCccCHH-----HH
Confidence 5688999999999999999999999999964321 121 23 444432 22 2355764333 44
Q ss_pred HHhH-hhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHH
Q 047998 195 TQWI-HSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKF 259 (558)
Q Consensus 195 ~~~i-~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l 259 (558)
++.+ .+ .+ =|+||||+|||+|..-.- |.=||+|.|++..+++.++....+..++ .+++.+
T Consensus 198 kq~Lmv~--G~-~rvfqI~~~FR~E~~~t~--r~pEFT~lE~e~af~d~~dvm~~~E~li~~i~~~v 259 (585)
T 1c0a_A 198 KQLLMMS--GF-DRYYQIVKCFRDEDLRAD--RQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEV 259 (585)
T ss_dssp HHHHHHT--TC-CEEEEEEEEECCCCCBTT--BCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CC-CceEEEeceeecCCCCCC--cCcccceeeeeecCCCHHHHHHHHHHHHHHHHHHH
Confidence 4432 23 23 289999999999998433 6669999999999999887777776666 455555
No 57
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=97.91 E-value=5.8e-05 Score=81.16 Aligned_cols=119 Identities=13% Similarity=0.124 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHH
Q 047998 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQ 196 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~ 196 (558)
-++++..|.+.+|+.|...||.||.||+|..... + |. .++|.+.--| .+++|+-..+- +.+
T Consensus 155 ~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~~---e-Gg-----~~~f~~~~~~-----~~~~L~~SpqL-----~lq 215 (456)
T 3m4p_A 155 VLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQC---E-GG-----STLFKLQYFN-----EPAYLTQSSQL-----YLE 215 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEC---------------CCCCEEEETT-----EEEEECSCCHH-----HHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEeCCeeecCCC---C-Cc-----cccccccccC-----CCcccccCHHH-----HHH
Confidence 5788999999999999999999999999976542 1 11 2244443222 36788766542 222
Q ss_pred hHhhcCCCCeEEEEEeeeeecCCCCCCcccc-ceEEEecceeeeCChHHHHHHHHHHH-HHHHHH
Q 047998 197 WIHSYRDLPLLVNQWANVTRWEMRTKPFVRT-LEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKF 259 (558)
Q Consensus 197 ~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~-REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l 259 (558)
.+.. .+ =|+||+|++||+|..... |- -||+|.|.+..+++.++....+..++ .+++.+
T Consensus 216 ~l~~--g~-~rVyeig~~FR~E~~~t~--rH~pEFtmlE~e~af~d~~d~m~~~E~li~~~~~~v 275 (456)
T 3m4p_A 216 SVIA--SL-GKSFCMLSSYRAEQSRTV--RHLAEYLHLEAELPFISFEDLLNHLEDLVCTVIDNV 275 (456)
T ss_dssp TTHH--HH-SSEEEEEEEECCCSCCCS--SCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh--cc-CcEEEEEhheecCCCCCC--cchHHHHHhHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 2211 12 379999999999986222 33 49999999999999888777776665 344443
No 58
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=97.89 E-value=7e-05 Score=82.80 Aligned_cols=119 Identities=14% Similarity=0.114 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEec--CCccccccccccCCCcHHHHHHH
Q 047998 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIG--GGKELEEKLVVRPTSETIVNHMF 194 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~--g~~~l~e~l~LRPt~e~~i~~~~ 194 (558)
-++++.+|.+.+|+.|...||.||.||+|....- +|- .+ |.+... .| .-++|+-..+ +|
T Consensus 143 ~l~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~s~~--------eGA-r~-F~v~~~~~~~----~~y~L~qSPQ-----l~ 203 (580)
T 1l0w_A 143 NLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTP--------EGA-RD-FLVPYRHEPG----LFYALPQSPQ-----LF 203 (580)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS--------SSS-CC-CEEECTTSTT----EEEECCSCSH-----HH
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCC--------CCC-CC-ccccccccCC----ceeECccCHH-----HH
Confidence 4688999999999999999999999999964321 121 22 444332 12 2355764433 44
Q ss_pred HHhH-hhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH-HHHHHH
Q 047998 195 TQWI-HSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI-DIYTKF 259 (558)
Q Consensus 195 ~~~i-~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il-~~y~~l 259 (558)
++.+ .+ .+ =|+||||+|||+|..-.- |.=||+|.|.+..+++.++....+..++ .+++.+
T Consensus 204 kq~Lmv~--G~-~rvfqI~~~FR~E~~~~~--r~pEFT~lE~e~af~d~~dvm~~~E~li~~i~~~v 265 (580)
T 1l0w_A 204 KQMLMVA--GL-DRYFQIARCFRDEDLRAD--RQPDFTQLDLEMSFVEVEDVLELNERLMAHVFREA 265 (580)
T ss_dssp HHHHHHT--TC-SEEEEEEEEECCCCCCSS--CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh--cc-CCeEEEeceeeCCCCCCC--cCCCccceeeeecCCCHHHHHHHHHHHHHHHHHHH
Confidence 4442 23 23 289999999999999433 6669999999999999877776666665 455554
No 59
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=97.76 E-value=0.00014 Score=80.65 Aligned_cols=115 Identities=13% Similarity=0.045 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHHHHHHH-HcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHH
Q 047998 117 GYAIWEAIQDYLNVKFK-ETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFT 195 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~-~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~ 195 (558)
-++++..|.+.+|+.|. ..||.||.||+|.... ..|. .+ |.+.... .+..++|+-..+ +|.
T Consensus 147 ~lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st----~~GA-----~~-F~v~~~~---~g~~~~L~qSpq-----l~k 208 (617)
T 4ah6_A 147 NLRLRSQMVMKMREYLCNLHGFVDIETPTLFKRT----PGGA-----KE-FLVPSRE---PGKFYSLPQSPQ-----QFK 208 (617)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCEECCCCSSBCCC----CSSS-----CC-CEEECSS---TTCEEECCSSTT-----HHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEeCCeeccCC----CCCC-----cC-ceecccc---CCcccccccCHH-----HHH
Confidence 47889999999999996 7999999999996421 1221 12 4443321 124678875554 344
Q ss_pred HhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCChHHHHHHHHHHH
Q 047998 196 QWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMI 253 (558)
Q Consensus 196 ~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~~~~a~~e~~~il 253 (558)
+.+.. ..+ =|+||||+|||+|..-.- |.-||+|.|.+..+++.++....+..++
T Consensus 209 q~l~v-~g~-~rvfqi~~~FR~E~~~t~--r~pEFt~lE~e~af~d~~d~m~~~E~l~ 262 (617)
T 4ah6_A 209 QLLMV-GGL-DRYFQVARCYRDEGSRPD--RQPEFTQIDIEMSFVDQTGIQSLIEGLL 262 (617)
T ss_dssp HHHHH-TSC-SEEEEEEEEECCCSSCSS--SCSEEEEEEEEEESCCHHHHHHHHHHHH
T ss_pred HHHHh-ccc-CcEEEEEhheecccCCCC--cCcceecceeeecCCCHHHHHHHHHHHH
Confidence 43221 122 299999999999988545 8889999999999998777666655554
No 60
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=97.70 E-value=0.00033 Score=72.72 Aligned_cols=117 Identities=17% Similarity=0.155 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeeecCccccHhh-Hhh---hhcCccccCCceEEEEecCCc-------cccccccccCC
Q 047998 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSF-IEK---EASHVEGFSPELALVTIGGGK-------ELEEKLVVRPT 185 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l-~~k---~sgh~~~f~~Emy~~~~~g~~-------~l~e~l~LRPt 185 (558)
+..-...+.+.+++.|...||+++.+|.+++... |.. ...|-..=..+.|++.+-... ..++..+||+.
T Consensus 99 ~~hp~~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~ 178 (350)
T 1b7y_A 99 GLHPITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTH 178 (350)
T ss_dssp BCCHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSS
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEcCccccccccccccccccceeecc
Confidence 3344678888899999999999999999987542 211 111211001234555532110 00146789999
Q ss_pred CcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeC
Q 047998 186 SETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHA 240 (558)
Q Consensus 186 ~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~ 240 (558)
..+...+.++. +..|+|+|++|+|||.|....- ...||+|.++..++.
T Consensus 179 tsp~llr~l~~-----~~~piriFEiGrVFR~d~~d~t--H~pEF~qlegl~~g~ 226 (350)
T 1b7y_A 179 TSPMQVRYMVA-----HTPPFRIVVPGRVFRFEQTDAT--HEAVFHQLEGLVVGE 226 (350)
T ss_dssp STHHHHHHHHH-----CCSSEEEEEEEEEECCCCCCSS--CCSEEEEEEEEEEET
T ss_pred chHHHHHHHHh-----cCCCeeEEEeeeEEECCCCCCC--CCChhHEEEEEEECC
Confidence 99888776654 3679999999999998763111 457999999999986
No 61
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=97.69 E-value=7.6e-05 Score=80.75 Aligned_cols=123 Identities=15% Similarity=0.051 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCeeeec-CccccHh----hHhhhhcCccccCCceEEEEec-------------------
Q 047998 116 YGYAIWEAIQDYLNVKFKETGHSNMYF-PQFIPYS----FIEKEASHVEGFSPELALVTIG------------------- 171 (558)
Q Consensus 116 ~g~~i~~~I~~~i~~~~~~~G~~ei~t-P~l~~~~----l~~k~sgh~~~f~~Emy~~~~~------------------- 171 (558)
-+..-...+.+.+++.|...||+++.+ |.+++.. .+....+|-.-=..+.|.+.+-
T Consensus 222 G~lHPl~~v~~~Ir~if~~mGF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~~P~~~~~~~e~~~~~v~~~He 301 (508)
T 3l4g_A 222 GHLHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHS 301 (508)
T ss_dssp CBCCHHHHHHHHHHHHHHHTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBCSCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHCcCeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEcCccccccccHHHHHhhhhhhh
Confidence 345667889999999999999999886 6665432 1111122321101122555431
Q ss_pred -CCc-----------cccccccccCCCcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeee
Q 047998 172 -GGK-----------ELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAH 239 (558)
Q Consensus 172 -g~~-----------~l~e~l~LRPt~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~ 239 (558)
|+. +-.+..+||+..++...+++....+..+..|+|+|++|+|||+|..... ++.+|+|.++.+++
T Consensus 302 ~g~~~s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~Dat--HlpeFhQlegl~~~ 379 (508)
T 3l4g_A 302 QGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDAT--HLAEFHQIEGVVAD 379 (508)
T ss_dssp TCBTTBCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCCSS--SCSEEEEEEEEEEE
T ss_pred ccccCCccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCCCCC--cCCeEEEEEEEEEC
Confidence 000 0013689999999999998877654235689999999999999987555 78899999998876
Q ss_pred C
Q 047998 240 A 240 (558)
Q Consensus 240 ~ 240 (558)
.
T Consensus 380 ~ 380 (508)
T 3l4g_A 380 H 380 (508)
T ss_dssp E
T ss_pred C
Confidence 3
No 62
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=97.61 E-value=0.00038 Score=76.09 Aligned_cols=120 Identities=16% Similarity=0.083 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccccccccccCCCcHHHHHHHHH
Q 047998 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQ 196 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~~~~ 196 (558)
-++++..|.+.+|+.|...||.||.||+|.+..- + |+. ++|.+.--+ .+++|+-..+ ++.+
T Consensus 243 ~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~---e-gga-----~~F~v~~~~-----~~~yL~~Spq-----l~~k 303 (548)
T 3i7f_A 243 IFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSS---E-GGS-----NIFEVKYFD-----RKAYLAQSPQ-----LYKQ 303 (548)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSBC---------------------------------CCBCSCTH-----HHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccC---C-CCc-----ceeEEecCC-----CceEeccCHH-----HHHH
Confidence 3678899999999999999999999999977641 1 122 234333222 2578876654 3433
Q ss_pred hHhhcCCCCeEEEEEeeeeecCCCCCCccc-cceEEEecceeeeC-ChHHHHHHHHHHH-HHHHHH
Q 047998 197 WIHSYRDLPLLVNQWANVTRWEMRTKPFVR-TLEFLWQEGHTAHA-TPEEAEKEAMQMI-DIYTKF 259 (558)
Q Consensus 197 ~i~s~rdLPlkl~q~~~vfR~E~~~rGllR-~REF~q~d~h~~~~-~~~~a~~e~~~il-~~y~~l 259 (558)
.+.. ..+ =|+||||++||+|..... | .-||+|.|.+.... +.++....+..++ .+++.+
T Consensus 304 ~ll~-~g~-~rVfeI~~~FR~E~~~t~--RHl~EFtmlE~e~af~~d~~d~m~~~E~li~~i~~~~ 365 (548)
T 3i7f_A 304 MAIM-GDF-RKVFEVGPVFRAENSNTR--RHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEI 365 (548)
T ss_dssp HHHT-TTC-CEEEEEEEECCCSCCCSS--SCCSCEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHh-cCc-CcEEEEeeeEecCCCCCC--CcchhhhchhhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 3222 123 499999999999997222 3 35999999997545 5677766666655 445444
No 63
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=97.49 E-value=0.00052 Score=69.58 Aligned_cols=110 Identities=11% Similarity=0.050 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeeecCccccHhh-Hhhh---hcCccccCCceEEEEecCCccccccccccCCCcHHHHHH
Q 047998 118 YAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSF-IEKE---ASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHM 193 (558)
Q Consensus 118 ~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l-~~k~---sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~~ 193 (558)
..-...+.+.+++.|...||+|+.+|.+.+... |..- ..|-..-..+.+++ .+..+||++..+.+...
T Consensus 52 ~~~~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l--------~e~~vLRtsl~p~ll~~ 123 (294)
T 2rhq_A 52 KHPLTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYI--------TDEILMRTHTSPVQART 123 (294)
T ss_dssp CCHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBS--------SSSEEECSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEEE--------cCcceeeccCHHHHHHH
Confidence 334677888999999999999999998877532 2111 11100000011222 13579999999988887
Q ss_pred HHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeC
Q 047998 194 FTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHA 240 (558)
Q Consensus 194 ~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~ 240 (558)
++... +..|+++|++|+|||.|..... ...||+|.++...+.
T Consensus 124 l~~N~---~~~~~riFEiG~Vfr~d~~d~~--h~~Ef~~Le~~~~g~ 165 (294)
T 2rhq_A 124 MEKRN---GQGPVKIICPGKVYRRDSDDAT--HSHQFTQIEGLVVDK 165 (294)
T ss_dssp HHHTT---TCSCEEEEEEEEEECCCCCBTT--BCSEEEEEEEEEEES
T ss_pred HHhcC---CCCCccEEEEcCEEecCCCCCC--CCChhhEEEEEEECC
Confidence 76654 3679999999999997652111 345999999999984
No 64
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=97.23 E-value=0.00037 Score=71.55 Aligned_cols=108 Identities=14% Similarity=0.095 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeeecCccccHh-hHh---hhhcCccccCCceEEEEecCCccccccccccCCCcHHHHH
Q 047998 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYS-FIE---KEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNH 192 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~-l~~---k~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt~e~~i~~ 192 (558)
+..-...+.+.+++.|...||+++.+|.+++.. -|. ...+|-..-..+.|.+. +..+||....+...+
T Consensus 105 ~~hp~~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i~--------e~~vLRThtsp~~lr 176 (327)
T 3pco_A 105 GLHPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFD--------TTRLLRTQTSGVQIR 176 (327)
T ss_dssp CCCHHHHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBSS--------SSCEECSCTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEeC--------CCceecccCCHHHHH
Confidence 345577788899999999999999999885432 111 11122100001123331 367999998877766
Q ss_pred HHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeC
Q 047998 193 MFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHA 240 (558)
Q Consensus 193 ~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~ 240 (558)
.++ ++..|++++++|+|||.+.. .. .+.+|+|.++-.++.
T Consensus 177 ~l~-----~~~~pirifeiGrVyR~d~d-~t--h~p~fhqlegl~v~~ 216 (327)
T 3pco_A 177 TMK-----AQQPPIRIIAPGRVYRNDYD-QT--HTPMFHQMEGLIVDT 216 (327)
T ss_dssp HHT-----TCCSSCCBCCEECCBCSCCB-TT--BCSBCCEEEEEEEET
T ss_pred HHH-----hCCCCeeEEeeccEEecCCC-cc--cCCcccEEEEEEECC
Confidence 553 24689999999999999833 12 455799999888753
No 65
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=96.99 E-value=0.0043 Score=67.51 Aligned_cols=120 Identities=14% Similarity=0.057 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccc-cCCceEEEEecC------------------------
Q 047998 118 YAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEG-FSPELALVTIGG------------------------ 172 (558)
Q Consensus 118 ~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~-f~~Emy~~~~~g------------------------ 172 (558)
..-...+.+.+++.|...||+++..|.++....-...-||-.. ..+..|++.+-.
T Consensus 56 ~HPl~~~~~~ir~~f~~mGF~e~~~p~ies~~~n~pq~ghpAr~~~D~tfyl~~p~~~~~g~~~~~~~~i~~~g~~~~~~ 135 (549)
T 2du7_A 56 PHPVMETIERLRQAYLRMGFEEMINPVIVDEMEIYKQFGPEAMAVLDRCFYLAGLPRPDVGLGNEKVEIIKNLGIDIDEE 135 (549)
T ss_dssp CCHHHHHHHHHHHHHHTTTCEECCCCSCEEHHHHHHHTCTTHHHHGGGCCEEECCCCCCCSSSSTTSCCSSCSCCCCSCC
T ss_pred cCHHHHHHHHHHHHHHHCCCEEeeCCeEeehHHhCCCcCCCcccccCceEEECCCCCcccccchhhhhhhhhcccccccc
Confidence 3456778889999999999999999999876543233445211 122256666310
Q ss_pred --------------C----cc--------------------------------ccccccccCCCcHHHHHHHHHhHhhcC
Q 047998 173 --------------G----KE--------------------------------LEEKLVVRPTSETIVNHMFTQWIHSYR 202 (558)
Q Consensus 173 --------------~----~~--------------------------------l~e~l~LRPt~e~~i~~~~~~~i~s~r 202 (558)
+ .+ ..+..+||++..+++...++... +++
T Consensus 136 ~~~~~~~~~~~y~~~~~~~~~~~~~v~~~~~~~~s~g~~~~d~~~~e~~~~~~~~e~svLRTsLlPGLL~~vr~N~-~r~ 214 (549)
T 2du7_A 136 KKERLREVLHLYKKGAIDGDDLVFEIAKALNVSNEMGLKVLETAFPEFKDLKPESTTLTLRSHMTSGWFITLSSLI-KKR 214 (549)
T ss_dssp CSSSCCCSCCCSSSSCCCSSSCCSCCCSSSSCCSCSCCCSSSSSCTTSSSCCCCEEEEECCSTTHHHHHHHHHTTT-TTS
T ss_pred hhhhhhhhhhhhccCCCchhhhhhHhhhhhhcccccccccccccchhhccccccccccccccccchhHHHHHHHHH-hcC
Confidence 0 00 01356899999988877665553 345
Q ss_pred CCCeEEEEEeeeeecCCC-CCCccccceEEEecceeeeC
Q 047998 203 DLPLLVNQWANVTRWEMR-TKPFVRTLEFLWQEGHTAHA 240 (558)
Q Consensus 203 dLPlkl~q~~~vfR~E~~-~rGllR~REF~q~d~h~~~~ 240 (558)
..|+++|++|+|||.+.. ... +.+||+|.++-..|.
T Consensus 215 ~~pvrlFEiGrVFr~D~~~d~t--h~~ef~qLaglv~G~ 251 (549)
T 2du7_A 215 KLPLKLFSIDRCFRREQREDRS--HLMSYHSASCVVVGE 251 (549)
T ss_dssp CSSEEEEEEEEECCCCSSCSSS--CCSCEEEEEEEEECT
T ss_pred CCCeEEEEEeeEEecCCcccCc--CCCcceEEEEEEECC
Confidence 789999999999998763 333 568999999999975
No 66
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.72 E-value=0.012 Score=64.82 Aligned_cols=120 Identities=13% Similarity=0.064 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccc-cCCceEEEEecC------------------------
Q 047998 118 YAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEG-FSPELALVTIGG------------------------ 172 (558)
Q Consensus 118 ~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~-f~~Emy~~~~~g------------------------ 172 (558)
..-...+.+.+++.|...||+++..|.++....-...-||-.. ..+..|++.+-.
T Consensus 64 ~HPl~~~~~~IR~if~~mGF~E~~~p~vese~~n~pq~gHpAR~~~D~tFyl~~P~~~~vg~~~~~~~~i~~~g~~is~~ 143 (648)
T 2odr_B 64 THPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEH 143 (648)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC-----------------------
T ss_pred CCHHHHHHHHHHHHHHHCCCEEeeCCEEeehhhhCCCcCCCccccCCceEEECCCCCCccccchhhhhhhhhcccccchh
Confidence 3456778888999999999999999999865432233444210 111255555310
Q ss_pred -------------C----cc--------------------------------ccccccccCCCcHHHHHHHHHhHhhcCC
Q 047998 173 -------------G----KE--------------------------------LEEKLVVRPTSETIVNHMFTQWIHSYRD 203 (558)
Q Consensus 173 -------------~----~~--------------------------------l~e~l~LRPt~e~~i~~~~~~~i~s~rd 203 (558)
+ .+ ..+.-+||++..+++...++... +.+.
T Consensus 144 ~~~l~~~~~~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~e~~~l~~~~~~sVLRTsLlPGLL~~vr~N~-~R~~ 222 (648)
T 2odr_B 144 KESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLM-NKKP 222 (648)
T ss_dssp ----------------------------------------------CCCCCCBCCSEEECCCTHHHHHHHHHHHT-TTSC
T ss_pred hhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccccccccCcccccchhhHHHHHHHHH-hcCC
Confidence 0 00 01246899999998777666553 3457
Q ss_pred CCeEEEEEeeeeecCCC-CCCccccceEEEecceeeeC
Q 047998 204 LPLLVNQWANVTRWEMR-TKPFVRTLEFLWQEGHTAHA 240 (558)
Q Consensus 204 LPlkl~q~~~vfR~E~~-~rGllR~REF~q~d~h~~~~ 240 (558)
.|+++|++|+|||.+.. ..- ...||+|.++-..|.
T Consensus 223 ~pvRLFEIGrVFR~D~~lDat--h~~Ef~qLeGlv~G~ 258 (648)
T 2odr_B 223 LPFKLFSIDRCFRREQKEDKS--HLMTYHSASCAIAGE 258 (648)
T ss_dssp SCEEEEEEEEEECCCSCCCSS--CCSEEEEEEEEEECT
T ss_pred CCeEEEEEeeEEecCcccccc--CCCcceEEEEEEECC
Confidence 89999999999997653 211 348999999999875
No 67
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.71 E-value=0.012 Score=64.85 Aligned_cols=120 Identities=13% Similarity=0.064 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccc-cCCceEEEEecC------------------------
Q 047998 118 YAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEG-FSPELALVTIGG------------------------ 172 (558)
Q Consensus 118 ~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~-f~~Emy~~~~~g------------------------ 172 (558)
..-...+.+.+++.|...||+++..|.++....-...-||-.. ..+..|++.+-.
T Consensus 64 ~HPl~~~~~~IR~if~~mGF~E~~~p~vese~~n~pq~gHpAR~~~D~tFyL~~P~~~~vg~~~~~~~~i~~~g~~is~~ 143 (665)
T 2odr_A 64 THPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEH 143 (665)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC-----------------------
T ss_pred CCHHHHHHHHHHHHHHHCCCEEeeCCEEeeehhhCCCcCCCccccCCcEEEECCCCCCccccchhhhhhhhhcccccchh
Confidence 3456778889999999999999999999865432233444210 111155555310
Q ss_pred -------------C----cc--------------------------------ccccccccCCCcHHHHHHHHHhHhhcCC
Q 047998 173 -------------G----KE--------------------------------LEEKLVVRPTSETIVNHMFTQWIHSYRD 203 (558)
Q Consensus 173 -------------~----~~--------------------------------l~e~l~LRPt~e~~i~~~~~~~i~s~rd 203 (558)
+ .+ ..+.-+||++..+++...++... +.+.
T Consensus 144 ~~~l~~~~~~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~e~~~l~~~a~~sVLRTSLlPGLL~~lr~N~-~R~~ 222 (665)
T 2odr_A 144 KESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLM-NKKP 222 (665)
T ss_dssp ----------------------------------------------CCCCCCBCCSEEECCCTHHHHHHHHHHHT-TTSC
T ss_pred hhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccchhhHHHHHHHHH-hcCC
Confidence 0 00 01246899999998777666553 3457
Q ss_pred CCeEEEEEeeeeecCCC-CCCccccceEEEecceeeeC
Q 047998 204 LPLLVNQWANVTRWEMR-TKPFVRTLEFLWQEGHTAHA 240 (558)
Q Consensus 204 LPlkl~q~~~vfR~E~~-~rGllR~REF~q~d~h~~~~ 240 (558)
.|+++|++|+|||.+.. ..- ...||+|.++-..|.
T Consensus 223 ~pvRLFEIGrVFR~D~~lDat--h~~Ef~qLeGlv~G~ 258 (665)
T 2odr_A 223 LPFKLFSIDRCFRREQKEDKS--HLMTYHSASCAIAGE 258 (665)
T ss_dssp SCEEEEEEEEEECCCSCCCSS--CCSEEEEEEEEEECT
T ss_pred CCeEEEEEeeEEecCcccccc--CCCcceEEEEEEECC
Confidence 89999999999997653 211 348999999999875
No 68
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.70 E-value=0.012 Score=64.83 Aligned_cols=120 Identities=13% Similarity=0.064 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccc-cCCceEEEEecC------------------------
Q 047998 118 YAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEG-FSPELALVTIGG------------------------ 172 (558)
Q Consensus 118 ~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~-f~~Emy~~~~~g------------------------ 172 (558)
..-...+.+.+++.|...||+++..|.++....-...-||-.. ..+..|++.+-.
T Consensus 64 ~HPl~~~~~~IReif~~mGF~E~~~p~vese~~n~pq~gHPAR~~~D~tFyL~~P~~~~vg~~~~~~~~i~~~g~~is~~ 143 (685)
T 2odr_D 64 THPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEH 143 (685)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC-----------------------
T ss_pred cCHHHHHHHHHHHHHHHCCCEEeeCCEEeehHHhCCCcCCCccccCCcEEEECCCCCCccccchhhhhhhhhcccccchh
Confidence 3456778889999999999999999999865432233444210 111155555310
Q ss_pred -------------C----cc--------------------------------ccccccccCCCcHHHHHHHHHhHhhcCC
Q 047998 173 -------------G----KE--------------------------------LEEKLVVRPTSETIVNHMFTQWIHSYRD 203 (558)
Q Consensus 173 -------------~----~~--------------------------------l~e~l~LRPt~e~~i~~~~~~~i~s~rd 203 (558)
+ .+ ..+.-+||++..+++...++... +.+.
T Consensus 144 ~~~l~~~~h~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~ef~~l~~~a~~sVLRTSLlPGLL~~vr~N~-~R~~ 222 (685)
T 2odr_D 144 KESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLM-NKKP 222 (685)
T ss_dssp ----------------------------------------------CCCCCCBCCSEEECCCTHHHHHHHHHHHT-TTSC
T ss_pred hhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccchhhHHHHHHHHH-hCCC
Confidence 0 00 01246899999998777666553 3457
Q ss_pred CCeEEEEEeeeeecCCC-CCCccccceEEEecceeeeC
Q 047998 204 LPLLVNQWANVTRWEMR-TKPFVRTLEFLWQEGHTAHA 240 (558)
Q Consensus 204 LPlkl~q~~~vfR~E~~-~rGllR~REF~q~d~h~~~~ 240 (558)
.|+++|++|+|||.+.. ..- ...||+|.++-..|.
T Consensus 223 ~pvRLFEIGrVFR~D~~lDat--h~~Ef~qLeGlv~G~ 258 (685)
T 2odr_D 223 LPFKLFSIDRCFRREQKEDKS--HLMTYHSASCAIAGE 258 (685)
T ss_dssp SCEEEEEEEEEECCCSCCCSS--CCSEEEEEEEEEECT
T ss_pred CCeEEEEeccEEecCcccccc--CCCcceEEEEEEECC
Confidence 89999999999997653 211 348999999999875
No 69
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.68 E-value=0.013 Score=64.80 Aligned_cols=120 Identities=13% Similarity=0.064 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccc-cCCceEEEEecC------------------------
Q 047998 118 YAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEG-FSPELALVTIGG------------------------ 172 (558)
Q Consensus 118 ~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~-f~~Emy~~~~~g------------------------ 172 (558)
..-...+.+.+++.|...||+++..|.++....-...-||-.. ..+..|++.+-.
T Consensus 64 ~HPl~~~~~~IReif~~mGF~Ev~~p~Vese~~n~pq~gHPAR~~~D~tFYL~~P~~~~vg~~~~~~~~i~~~g~~is~~ 143 (701)
T 2odr_C 64 THPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEH 143 (701)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEECCC-----------------------
T ss_pred cCHHHHHHHHHHHHHHHCCCEEeeCCEEeeehhhCCCcCCCccccCCcEEEECCCCCCccccchhhhhhhhhcccccchh
Confidence 3456778889999999999999999999865432233444211 111255555310
Q ss_pred -------------C----cc--------------------------------ccccccccCCCcHHHHHHHHHhHhhcCC
Q 047998 173 -------------G----KE--------------------------------LEEKLVVRPTSETIVNHMFTQWIHSYRD 203 (558)
Q Consensus 173 -------------~----~~--------------------------------l~e~l~LRPt~e~~i~~~~~~~i~s~rd 203 (558)
+ .+ ..+.-+||++..+++...++... +.+.
T Consensus 144 ~~~l~~~~h~yk~~~~~~~dlv~~v~~~h~~~~s~g~~~~~~~~~ef~~l~~~a~~sVLRTSLlPGLL~~vr~N~-~R~~ 222 (701)
T 2odr_C 144 KESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLM-NKKP 222 (701)
T ss_dssp ----------------------------------------------CCCCCCEEEEEEECCCTHHHHHHHHHHHT-TTSC
T ss_pred hhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccchhhHHHHHHHHH-hCCC
Confidence 0 00 01246899999998777666553 3457
Q ss_pred CCeEEEEEeeeeecCCC-CCCccccceEEEecceeeeC
Q 047998 204 LPLLVNQWANVTRWEMR-TKPFVRTLEFLWQEGHTAHA 240 (558)
Q Consensus 204 LPlkl~q~~~vfR~E~~-~rGllR~REF~q~d~h~~~~ 240 (558)
.|+++|++|+|||.+.. ..- ...||+|.++-..|.
T Consensus 223 ~pvRLFEIGrVFR~D~~lDat--h~~EfhqLeGlv~G~ 258 (701)
T 2odr_C 223 LPFKLFSIDRCFRREQKEDKS--HLMTYHSASCAIAGE 258 (701)
T ss_dssp SCEEEEEEEEEECCCSCCCSS--CCSEEEEEEEEEECT
T ss_pred CCeEEEEEeeEEccCcccccc--CCCcceEEEEEEECC
Confidence 89999999999997653 211 348999999999875
No 70
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=95.62 E-value=0.072 Score=58.97 Aligned_cols=113 Identities=11% Similarity=0.009 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccc-cccccccCCCcHHHHHHHHHhH
Q 047998 120 IWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKEL-EEKLVVRPTSETIVNHMFTQWI 198 (558)
Q Consensus 120 i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l-~e~l~LRPt~e~~i~~~~~~~i 198 (558)
-.+++.+.+++.|...||+|+.++.|+..+.....-+.-..- .+.+.+.+ ++ ++.-+||++.-+++...++...
T Consensus 392 ~~~~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~-~~~v~L~N----Pis~e~svmRtsLlpgLL~~l~~N~ 466 (589)
T 3l4g_B 392 PLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISA-TKAVHISN----PKTAEFQVARTTLLPGLLKTIAANR 466 (589)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTS-SCCCBBSS----CSSGGGSEECSCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCC-CCeEEEcC----CCchhHhHHHHHHHHHHHHHHHHHh
Confidence 345678889999999999999999999876321111100000 11222221 11 2346899999999988777664
Q ss_pred hhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCC
Q 047998 199 HSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHAT 241 (558)
Q Consensus 199 ~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~ 241 (558)
+ +..|+|+|++|+|||.+.... ...+|+++..+.+.|..
T Consensus 467 ~--~~~~vrlFEiG~Vf~~d~~~~--~~~~e~~~la~~~~g~~ 505 (589)
T 3l4g_B 467 K--MPLPLKLFEISDIVIKDSNTD--VGAKNYRHLCAVYYNKN 505 (589)
T ss_dssp T--SCSCEEEEEEEEEEEECTTST--TSEEEEEEEEEEEESSS
T ss_pred c--CCCceEEEEeeeEEecCCccc--cCCccccEEEEEEECCC
Confidence 3 356999999999999765421 13578888888777643
No 71
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=93.67 E-value=0.51 Score=53.96 Aligned_cols=111 Identities=7% Similarity=-0.019 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCc-eEEEEecCCccc-cccccccCCCcHHHHHHH
Q 047998 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPE-LALVTIGGGKEL-EEKLVVRPTSETIVNHMF 194 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~E-my~~~~~g~~~l-~e~l~LRPt~e~~i~~~~ 194 (558)
+..-.+.+.+.+++.|...||+|+.|..|...+.+ +.-+ . ..+ .+.+.+ ++ ++.-+||++.-+++...+
T Consensus 491 ~~~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~-~~l~---~-~~~~~v~L~N----Pis~e~svLRtsLlpgLL~~l 561 (795)
T 2rhq_B 491 ELTDRQHKTRTLKETLEGAGLNQAITYSLVSKDHA-KDFA---L-QERPTISLLM----PMSEAHATLRQSLLPHLIEAT 561 (795)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCEECCCCSEECTTTT-TTTC---S-SCCCCEECSS----CSCTTSSEECSCSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEecCCccCHHHH-HhhC---C-CCCceEEEcC----CCchhhhhhhhccHHHHHHHH
Confidence 34456778888999999999999998888877644 2111 0 112 233322 11 235689999999999887
Q ss_pred HHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeC
Q 047998 195 TQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHA 240 (558)
Q Consensus 195 ~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~ 240 (558)
+... +++..|+++|++|+|||.+..... . +||++..+-..|.
T Consensus 562 ~~N~-~r~~~~vrlFEiG~Vf~~d~~~~~--~-~e~~~la~l~~G~ 603 (795)
T 2rhq_B 562 AYNV-ARKNKDVRLYEIGRVFFGNGEGEL--P-DEVEYLSGILTGE 603 (795)
T ss_dssp HHHH-HTTCCCEEEEEEEEEEECCCTTSC--C-EEEEEEEEEEESE
T ss_pred HHHh-cCCCCCeEEEEEeeEEecCCcccC--c-chhhEEEEEEEec
Confidence 7764 345679999999999996433111 2 7888887777653
No 72
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=93.26 E-value=0.74 Score=43.87 Aligned_cols=112 Identities=13% Similarity=0.060 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccc-cccccccCCCcHHHHHHHHHhHh
Q 047998 121 WEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKEL-EEKLVVRPTSETIVNHMFTQWIH 199 (558)
Q Consensus 121 ~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l-~e~l~LRPt~e~~i~~~~~~~i~ 199 (558)
.+++++.+++.+...||+|+.|-.|...+.+.+ -+... ..+...+.+ ++ ++.-+||++.-+++...++..+.
T Consensus 6 ~~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~-~~~~~--~~~~v~l~N----Pls~e~~vmRtsLlpgLL~~~~~N~~ 78 (213)
T 3ica_A 6 RYKWQTVVSEQLVGAGFNEILNNSLTAGSYYEG-LKSHP--REMAVELMN----PLSQELNCMRQTLLFGGLETLSHNLR 78 (213)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEGGGGTT-CSSSC--GGGCCBCSS----BSCSSEEEECSSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCceeeeccCCCHHHHhh-hcccC--cCCeEEecC----CccHHHHHHHHHhHHHHHHHHHHHHc
Confidence 457888899999999999999999988776532 11000 011111111 12 23568999999998887776643
Q ss_pred hcCCCCeEEEEEeeeeecCCCC----CCccccceEEEecceeeeC
Q 047998 200 SYRDLPLLVNQWANVTRWEMRT----KPFVRTLEFLWQEGHTAHA 240 (558)
Q Consensus 200 s~rdLPlkl~q~~~vfR~E~~~----rGllR~REF~q~d~h~~~~ 240 (558)
++.-++++|++|+||+.+... .++-..+|..+..+-+.|.
T Consensus 79 -r~~~~~~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~ 122 (213)
T 3ica_A 79 -RKHLSLYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQ 122 (213)
T ss_dssp -TTCSEEEEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEB
T ss_pred -CCCCCeeEEEeeeEEecCCccccccccccccchhhEEEEEEeCC
Confidence 233359999999999976421 1111346666666655553
No 73
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=92.73 E-value=0.6 Score=44.55 Aligned_cols=111 Identities=10% Similarity=0.048 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccc-cccccccCCCcHHHHHHHHHhHh
Q 047998 121 WEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKEL-EEKLVVRPTSETIVNHMFTQWIH 199 (558)
Q Consensus 121 ~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l-~e~l~LRPt~e~~i~~~~~~~i~ 199 (558)
..++++.+++.+...||+|+.|-.|...+.+.+ -+..+ ..+...+.+ ++ ++.-+||++.-+++...++..+.
T Consensus 6 ~~~~~~~ir~~l~~~G~~Evitysf~~~~~~~~-~~~~~--~~~~v~l~N----Pls~e~~vmRtsLlpgLL~~~~~N~~ 78 (213)
T 3ig2_A 6 SNKLQNLVAEQLVGCGFNEILNNSLTRAAYYDG-LESYP--SKNLVMLLN----PLSADLNCMRQTLLFGGLESIAHNAN 78 (213)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECGGGGTT-CSSSC--GGGCEEBSS----GGGCSCCEECSCSHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHCCCeEEeccccCCHHHHHh-hcccC--cCCeEEEeC----CcchhHHHHHHHhHHHHHHHHHHHhc
Confidence 356788899999999999999999988876532 11000 012222221 12 23568999999988887776643
Q ss_pred hcCCCCeEEEEEeeeeecCCCC----CCccccceEEEecceeee
Q 047998 200 SYRDLPLLVNQWANVTRWEMRT----KPFVRTLEFLWQEGHTAH 239 (558)
Q Consensus 200 s~rdLPlkl~q~~~vfR~E~~~----rGllR~REF~q~d~h~~~ 239 (558)
++.-++++|++|+||+.+... .++-..+|..+..+-+.|
T Consensus 79 -r~~~~v~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G 121 (213)
T 3ig2_A 79 -RKNADLKFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTG 121 (213)
T ss_dssp -----CCEEEEEEEEEEECC----------CEEEEEEEEEEEEE
T ss_pred -CCCCCeeEEEeeeEEecCcccccccccccccchhHEEEEEEEC
Confidence 233469999999999976521 111134666666555544
No 74
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=92.50 E-value=0.52 Score=49.80 Aligned_cols=103 Identities=11% Similarity=-0.008 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHc--------CCeeeec-CccccHh-hHhh---hhcCccccCCceEEEEecCCccccccccccCC
Q 047998 119 AIWEAIQDYLNVKFKET--------GHSNMYF-PQFIPYS-FIEK---EASHVEGFSPELALVTIGGGKELEEKLVVRPT 185 (558)
Q Consensus 119 ~i~~~I~~~i~~~~~~~--------G~~ei~t-P~l~~~~-l~~k---~sgh~~~f~~Emy~~~~~g~~~l~e~l~LRPt 185 (558)
.-...+.+.+++.|... ||+++.+ |.+++.. -|.. ..+|-..-..+.|++. +..+||..
T Consensus 48 hPl~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~~Dtfyi~--------~~~vLRTh 119 (415)
T 3cmq_A 48 HPLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLN--------RTHMLRAH 119 (415)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGGSCBSS--------SSEEECSS
T ss_pred CHHHHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCcccccceEEec--------CCeEEcCC
Confidence 34566666777777666 9999998 6665443 2211 1223111112234332 35799988
Q ss_pred CcHHHHHHHHHhHhhcCCCCeEEEEEeeeeecCCCCCCccccceEEEecceee
Q 047998 186 SETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTA 238 (558)
Q Consensus 186 ~e~~i~~~~~~~i~s~rdLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~ 238 (558)
..+...+++++ ..| |++.+|.|||.|.-... .+-+|+|.++-.+
T Consensus 120 ts~~~~~~l~~------~~~-k~~~~G~VyR~D~~da~--h~n~fhQ~egv~l 163 (415)
T 3cmq_A 120 TSAHQWDLLHA------GLD-AFLVVGDVYRRDQIDSQ--HYPIFHQLEAVRL 163 (415)
T ss_dssp GGGGHHHHHHT------TCS-EEEEEEEEECCCCCBTT--BCSEEEEEEEEEE
T ss_pred CcHHHHHHHHH------CCC-CEEEeeeEEeccchhhh--hhHHhcCCCcEEE
Confidence 77777776543 236 99999999999865333 6668888886554
No 75
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=91.74 E-value=1.3 Score=50.58 Aligned_cols=105 Identities=16% Similarity=0.062 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccc-cccccccCCCcHHHHHHHH
Q 047998 117 GYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKEL-EEKLVVRPTSETIVNHMFT 195 (558)
Q Consensus 117 g~~i~~~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l-~e~l~LRPt~e~~i~~~~~ 195 (558)
+..-.+++.+.+++.|...||+|+.|-.|...+.+ ..-+ . ..+.+.+.+ ++ ++.-+||++.-+++...++
T Consensus 487 ~~~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~-~~l~---~-~~~~v~L~N----Pis~d~svLRtsLlpgLL~~l~ 557 (785)
T 1b7y_B 487 GVEAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDA-RRFR---L-DPPRLLLLN----PLAPEKAALRTHLFPGLVRVLK 557 (785)
T ss_dssp STTHHHHHHHHHHHHHHHHTCEECCCCSEECTTHH-HHTT---C-CCCSCEESS----CSSTTSSEECSCSHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHCCCEEEecCcccCHHHH-HhcC---C-CCCeEEEcC----CCchhhhhhhhhhHHHHHHHHH
Confidence 33446778888999999999999998888877654 2111 0 122233322 11 2345899999999998877
Q ss_pred HhHhhcC-CCCeEEEEEeeeeecCCCCCCccccceEEEecceeeeCC
Q 047998 196 QWIHSYR-DLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHAT 241 (558)
Q Consensus 196 ~~i~s~r-dLPlkl~q~~~vfR~E~~~rGllR~REF~q~d~h~~~~~ 241 (558)
.... ++ ..|+++|++|+||| + +||++..+-..|..
T Consensus 558 ~N~~-r~~~~~vrlFEiG~Vf~-~---------~e~~~lagl~~G~~ 593 (785)
T 1b7y_B 558 ENLD-LDRPERALLFEVGRVFR-E---------REETHLAGLLFGEG 593 (785)
T ss_dssp HHHH-HSCCSCEEEEEEEEEES-S---------SEEEEEEEEEESSC
T ss_pred HHhh-cCCCCCeEEEEEeeeec-c---------ChhhEEEEEEECCC
Confidence 7643 34 57999999999999 3 78888877777643
No 76
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=62.85 E-value=40 Score=38.37 Aligned_cols=88 Identities=8% Similarity=-0.067 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHcCCeeeecCccccHhhHhhhhcCccccCCceEEEEecCCccc-cccccccCCCcHHHHHHHHHhHhhc
Q 047998 123 AIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKEL-EEKLVVRPTSETIVNHMFTQWIHSY 201 (558)
Q Consensus 123 ~I~~~i~~~~~~~G~~ei~tP~l~~~~l~~k~sgh~~~f~~Emy~~~~~g~~~l-~e~l~LRPt~e~~i~~~~~~~i~s~ 201 (558)
...+.+++.+...||+|+.|-.|...+.+.+ -+. ..+...+.+ ++ ++.=+||++.-+++...++... ++
T Consensus 493 ~~~~~~r~~l~~~G~~Evitysf~~~~~~~~-~~~----~~~~v~l~N----Pis~e~svmRtsLlpgLL~~~~~N~-~r 562 (795)
T 3pco_B 493 LSLKRVKTLLNDKGYQEVITYSFVDPKVQQM-IHP----GVEALLLPS----PISVEMSAMRLSLWTGLLATVVYNQ-NR 562 (795)
T ss_dssp CCHHHHHHHHHHTTCEECCCCSEECHHHHHH-HSS----SCCCCBCSS----CSCSTTCEECSSSHHHHHHHHHHHH-TS
T ss_pred HHHHHHHHHHHHCCCeeeeccCcCCHHHHHh-hCC----CCCeEEEcC----CCchhHHHHHHHHHHHHHHHHHHHH-hC
Confidence 3456778888899999999999988876532 110 011111111 11 2345899999999888777664 33
Q ss_pred CCCCeEEEEEeeeeecCCC
Q 047998 202 RDLPLLVNQWANVTRWEMR 220 (558)
Q Consensus 202 rdLPlkl~q~~~vfR~E~~ 220 (558)
+.-++++|++|+||..+..
T Consensus 563 ~~~~v~lFEiG~Vf~~~~~ 581 (795)
T 3pco_B 563 QQNRVRIFESGLRFVPDTQ 581 (795)
T ss_dssp SCCCCEEEEEEEEEEECTT
T ss_pred CCCCccEEEeeeEEecCCC
Confidence 4557999999999987654
No 77
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=52.10 E-value=27 Score=33.76 Aligned_cols=73 Identities=22% Similarity=0.224 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCCCcEEEEeCCCCc------chhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHH
Q 047998 336 STRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKA------DEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGW 409 (558)
Q Consensus 336 ~eRli~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~------~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgk 409 (558)
.+-++...++. .|.||.++|=.... -+-....+....+.+.|+++||+|.+.-..+ -.
T Consensus 76 t~emi~ia~~~-------------kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~GIrVSLFIDpd---~~ 139 (243)
T 1m5w_A 76 TEEMLAIAVET-------------KPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFIDAD---EE 139 (243)
T ss_dssp SHHHHHHHHHH-------------CCSEEEECCCCSSCSSCCSCCCSGGGHHHHHHHHHHHHHTTCEEEEEECSC---HH
T ss_pred CHHHHHHHHHc-------------CCCEEEECCCCCCCcCCCcchhHHhhHHHHHHHHHHHHHCCCEEEEEeCCC---HH
Confidence 45677666553 48899999964211 0112245667788899999999999887542 36
Q ss_pred HHHHHHHcCCCEEEEe
Q 047998 410 KFNFWEMKGIPLRIEI 425 (558)
Q Consensus 410 k~~~ae~~GiP~~IiI 425 (558)
++..|...|+|+ |++
T Consensus 140 qi~aA~~~GA~~-IEL 154 (243)
T 1m5w_A 140 QIKAAAEVGAPF-IEI 154 (243)
T ss_dssp HHHHHHHTTCSE-EEE
T ss_pred HHHHHHHhCcCE-EEE
Confidence 899999999995 554
No 78
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Probab=49.22 E-value=27 Score=34.32 Aligned_cols=73 Identities=21% Similarity=0.247 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCCCcEEEEeCCCCc------chhHHHHHHHHHHHHHHhhCCcEEEEeCCCCCCHHH
Q 047998 336 STRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKA------DEKTGVLSAALSAKEVLQKSGIRVKLDDSDQRTPGW 409 (558)
Q Consensus 336 ~eRli~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~------~~~~~~~~~a~~I~~~Lr~~Girv~vD~r~~~slgk 409 (558)
.+-++...++. .|.||.+||-.... -+.....+....+.+.|+++||||.+.-..+ -.
T Consensus 104 t~emi~ial~~-------------kP~~vtLVPEkreE~TTegGlDv~~~~~~L~~~i~~L~~~GIrVSLFIDpd---~~ 167 (278)
T 3gk0_A 104 TPEMLDIACEI-------------RPHDACLVPEKRSELTTEGGLDVVGHFDAVRAACKQLADAGVRVSLFIDPD---EA 167 (278)
T ss_dssp SHHHHHHHHHH-------------CCSEEEECCCSGGGBCSSSSBCTTTTHHHHHHHHHHHHHTTCEEEEEECSC---HH
T ss_pred CHHHHHHHHHc-------------CCCEEEECCCCCCCcCCCcchhhhccHHHHHHHHHHHHHCCCEEEEEeCCC---HH
Confidence 56677766653 48899999954210 0111235566778889999999999876542 45
Q ss_pred HHHHHHHcCCCEEEEe
Q 047998 410 KFNFWEMKGIPLRIEI 425 (558)
Q Consensus 410 k~~~ae~~GiP~~IiI 425 (558)
++..|...|+|+ |++
T Consensus 168 qI~aA~~~GAd~-IEL 182 (278)
T 3gk0_A 168 QIRAAHETGAPV-IEL 182 (278)
T ss_dssp HHHHHHHHTCSE-EEE
T ss_pred HHHHHHHhCcCE-EEE
Confidence 899999999995 566
No 79
>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.85 E-value=82 Score=28.68 Aligned_cols=77 Identities=13% Similarity=-0.010 Sum_probs=49.4
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCH-------------HHHHHH----HHHcCCCEEEEeCceecCCCeEEEEEcCCCCcc
Q 047998 384 LSAKEVLQKSGIRVKLDDSDQRTP-------------GWKFNF----WEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQ 446 (558)
Q Consensus 384 ~~I~~~Lr~~Girv~vD~r~~~sl-------------gkk~~~----ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~ 446 (558)
..|.+.|+++=|-...|.+. +- |.+... ..-.+.|+.++|.++ ++..+|..+-.|
T Consensus 81 ~~V~~~l~~nfV~w~~dv~~--~e~~~~~~~~~~~~~g~~~a~~~~~~~~~~~P~l~ii~~~---~~~~~vl~~~~G--- 152 (178)
T 2ec4_A 81 ESIVSYLSQNFITWAWDLTK--DSNRARFLTMCNRHFGSVVAQTIRTQKTDQFPLFLIIMGK---RSSNEVLNVIQG--- 152 (178)
T ss_dssp HHHHHHHHHTEEEEEEECCS--HHHHHHHHHHHHHHTCHHHHHHHHHSCSTTCSEEEEECCC---SSCCCEEEEECS---
T ss_pred HHHHHHHHcCEEEEEEeCCC--chhhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEEEcC---CCceEEEEEEeC---
Confidence 45777787754555666654 23 333333 245789999999876 344445444444
Q ss_pred ccccccccChHHHHHHHHHHHHHHHHHH
Q 047998 447 GKVFGISMEPSILEAYVKDKLDEIQSAL 474 (558)
Q Consensus 447 ~~~~~v~v~~~el~~~i~~ll~~~~~~L 474 (558)
.++.+++.+.+.+.++..+..|
T Consensus 153 ------~~~~~~ll~~L~~~~e~~~~~l 174 (178)
T 2ec4_A 153 ------NTTVDELMMRLMAAMEIFTAQQ 174 (178)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHHS
T ss_pred ------CCCHHHHHHHHHHHHHHhhHhh
Confidence 3567899999988888766543
No 80
>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A*
Probab=33.75 E-value=31 Score=33.62 Aligned_cols=73 Identities=18% Similarity=0.138 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCCCcEEEEeCCCCcchhHH----HHHHHHHHHHHHhhCCcEEEEeCCCCCCHHHHH
Q 047998 336 STRFVGGIIMTHGDDTGLMLPPRIAPIQVVIVPIWKKADEKTG----VLSAALSAKEVLQKSGIRVKLDDSDQRTPGWKF 411 (558)
Q Consensus 336 ~eRli~~lie~~~D~~Gl~lP~~lAP~qV~Iipi~~~~~~~~~----~~~~a~~I~~~Lr~~Girv~vD~r~~~slgkk~ 411 (558)
.+-++...++. .|.||.+||-....-..+. ..+....+.+.|+++||+|.+.-..+ -.++
T Consensus 75 t~emi~ial~~-------------kP~~vtLVPEkreE~TTegGldv~~~~L~~~i~~L~~~GIrVSLFIDpd---~~qi 138 (260)
T 3o6c_A 75 NDEILNLALKL-------------KPHRVTLVPEKREELTTEGGLCLNHAKLKQSIEKLQNANIEVSLFINPS---LEDI 138 (260)
T ss_dssp CHHHHHHHHHH-------------CCSEEEECCCSGGGBCTTSSBCTTCTTHHHHHHHHHHTTCEEEEEECSC---HHHH
T ss_pred CHHHHHHHHHc-------------CCCEEEECCCCCCccCCCCChhhCHHHHHHHHHHHHHCCCEEEEEeCCC---HHHH
Confidence 56677766653 4889999995421100000 23344567789999999999886542 4589
Q ss_pred HHHHHcCCCEEEEe
Q 047998 412 NFWEMKGIPLRIEI 425 (558)
Q Consensus 412 ~~ae~~GiP~~IiI 425 (558)
..|...|+++ |++
T Consensus 139 ~aA~~~GAd~-IEL 151 (260)
T 3o6c_A 139 EKSKILKAQF-IEL 151 (260)
T ss_dssp HHHHHTTCSE-EEE
T ss_pred HHHHHhCCCE-EEE
Confidence 9999999995 676
No 81
>1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha, hydrolase; 1.80A {Paenibacillus polymyxa} SCOP: c.56.5.6
Probab=27.76 E-value=1.5e+02 Score=26.79 Aligned_cols=51 Identities=22% Similarity=0.160 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHHhhC-CcEEEEe---CCCCCCHHHHHHHHHHcCCCEEEEeCc
Q 047998 376 KTGVLSAALSAKEVLQKS-GIRVKLD---DSDQRTPGWKFNFWEMKGIPLRIEIGP 427 (558)
Q Consensus 376 ~~~~~~~a~~I~~~Lr~~-Girv~vD---~r~~~slgkk~~~ae~~GiP~~IiIG~ 427 (558)
.+-.++.|.++.+.|++. |++|.+- |.. .++..+...|...+.-+.|-|=-
T Consensus 27 k~~~l~ia~~l~~~L~~~~G~~V~ltR~~D~~-~~L~~R~~~an~~~adlfiSiH~ 81 (179)
T 1jwq_A 27 KTFNLAMALKVESILKQNPKLEVVLTRSDDTF-LELKQRVKVAENLKANVFVSIHA 81 (179)
T ss_dssp HHHHHHHHHHHHHHHHTCTTEEEEESCSSSCC-CCHHHHHHHHHHTTCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCCCCCC-CCHHHHHHHHHhhCCCEEEEEcc
Confidence 345678899999999999 9999874 333 57999999999999999888843
No 82
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=24.68 E-value=2.7e+02 Score=23.14 Aligned_cols=59 Identities=17% Similarity=0.248 Sum_probs=35.1
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHcCCCEEEEeCceecCCCeEEEEEcCCCCccccccccccChHHHHHHHHHHHH
Q 047998 395 IRVKLDDSDQRTPGWKFNFWEMKGIPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLD 468 (558)
Q Consensus 395 irv~vD~r~~~slgkk~~~ae~~GiP~~IiIG~kEl~~~~V~Ik~rdt~ek~~~~~~v~v~~~el~~~i~~ll~ 468 (558)
+.+.+|......+..-.+.+...++|..++|+ .+|.|.-+.. | .++.++|.+.|+++|+
T Consensus 94 ~~~~~d~~~~~~~~~~~~~~~v~~~P~~~lid----~~G~i~~~~~--g---------~~~~~~l~~~i~~ll~ 152 (158)
T 3eyt_A 94 FPVGVDQPGDGAMPRTMAAYQMRGTPSLLLID----KAGDLRAHHF--G---------DVSELLLGAEIATLLG 152 (158)
T ss_dssp SCEEEECCCSSSSCHHHHHTTCCSSSEEEEEC----TTSEEEEEEE--S---------CCCHHHHHHHHHHHHT
T ss_pred ceEEEcCccchhhHHHHHHcCCCCCCEEEEEC----CCCCEEEEEe--C---------CCCHHHHHHHHHHHhc
Confidence 55667765422222344555678999999997 3566654433 2 2334667777777664
No 83
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=23.19 E-value=43 Score=27.33 Aligned_cols=27 Identities=15% Similarity=0.410 Sum_probs=19.4
Q ss_pred eeecccHHHHHHHHhC--CCEEE----eeCCCC
Q 047998 486 IVDVSSYEELKEAISM--GKWAR----GPWSAS 512 (558)
Q Consensus 486 i~~v~~~ee~k~al~~--~~~v~----apwc~~ 512 (558)
+..+.+.++|...+.+ ++.+. ||||+.
T Consensus 2 V~~i~~~~~f~~~l~~~~~k~vvv~F~a~wC~~ 34 (105)
T 3zzx_A 2 VYQVKDQEDFTKQLNEAGNKLVVIDFYATWCGP 34 (105)
T ss_dssp CEECCSHHHHHHHHHHTTTSEEEEEEECTTCHH
T ss_pred eEEeCCHHHHHHHHHhcCCCEEEEEEECCCCCC
Confidence 5678889999998864 34443 599975
No 84
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=21.11 E-value=1.3e+02 Score=27.12 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHhhcCeeecccHHHHHHHHhCCCEEEeeCCCChhhHHHHHHHhCCcccccccCCCCCCccccccCC
Q 047998 467 LDEIQSALLERATSFRDSNIVDVSSYEELKEAISMGKWARGPWSASDADELKVKEETGATIRCFPFEQPQGNKTCFMTGN 546 (558)
Q Consensus 467 l~~~~~~L~~rA~~~~~~~i~~v~~~ee~k~al~~~~~v~apwc~~~~ce~~ik~~~~a~~~cip~~~~~~~~~C~~~g~ 546 (558)
.+..|..+|+++++..++.... ....+-+.+-||-.-.+ + .+.+|+.||-
T Consensus 112 ~E~~H~~~~~~~l~~l~~~~~~-----------~~~~~~~C~~CG~i~~~----------------~---~p~~CP~Cg~ 161 (170)
T 3pwf_A 112 AEKIHAELYRKAKEKAEKGEDI-----------EIKKVYICPICGYTAVD----------------E---APEYCPVCGA 161 (170)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCC-----------CCSCEEECTTTCCEEES----------------C---CCSBCTTTCC
T ss_pred HHHHHHHHHHHHHHHHhcCCcC-----------CCCCeeEeCCCCCeeCC----------------C---CCCCCCCCCC
Confidence 4467888888888887766432 11233447888875421 1 2248999998
Q ss_pred CcceEE
Q 047998 547 PAQEVA 552 (558)
Q Consensus 547 ~a~~~~ 552 (558)
|.....
T Consensus 162 ~~~~F~ 167 (170)
T 3pwf_A 162 PKEKFV 167 (170)
T ss_dssp BGGGCE
T ss_pred CHHHce
Confidence 876544
Done!