BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048002
(351 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 285 bits (730), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 145/240 (60%), Positives = 170/240 (70%), Gaps = 36/240 (15%)
Query: 122 LPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKD- 180
+P SVDWRK+GAVT VKDQG+CGSCWAFST+V+VEGIN+IKT +L SLSEQELVDCD D
Sbjct: 2 VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ 61
Query: 181 NHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKN 240
N GC+GGLM+ A FI + G+TTE +YPY A DG+C++ +N
Sbjct: 62 NQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSK-----------------EN 104
Query: 241 APEVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQFYSE--------------- 285
AP V +DG+E VPE+DENAL+KAVANQPV+VAIDAGG DFQFYSE
Sbjct: 105 APAVSIDGHENVPENDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGSCGTELDHGV 164
Query: 286 ---GYGATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPVKLHPEN 342
GYG T DGTKYW VKNSWG +W EKGYIRM RGI +EGLCGI +EASYP+K N
Sbjct: 165 AIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPIKKSSNN 224
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 255 bits (652), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 130/250 (52%), Positives = 161/250 (64%), Gaps = 35/250 (14%)
Query: 119 TQDLPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCD 178
DLPPSVDWR++GAVTGVKDQG+CGSCWAFSTVVSVEGIN I+TG L SLSEQEL+DCD
Sbjct: 1 VSDLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCD 60
Query: 179 -KDNHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNG 237
DN GC GGLM+ A +I + GL TE +YPY A G+C + +
Sbjct: 61 TADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARGTCNVARAA-------------- 106
Query: 238 DKNAPEVI-LDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQFYSE----------- 285
+N+P V+ +DG++ VP + E L +AVANQPV+VA++A GK F FYSE
Sbjct: 107 -QNSPVVVHIDGHQDVPANSEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTGECGTEL 165
Query: 286 -------GYGATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPVKL 338
GYG +DG YW VKNSWG W E+GYIR+ + A GLCGI +EASYPVK
Sbjct: 166 DHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPVKT 225
Query: 339 HPENSRHPRK 348
+ + PR+
Sbjct: 226 YSKPKPTPRR 235
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 227 bits (579), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 119/235 (50%), Positives = 144/235 (61%), Gaps = 37/235 (15%)
Query: 121 DLPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKD 180
DLP S+DWR+ GAV VK+QG CGSCWAFSTV +VEGIN+I TG+L SLSEQ+LVDC
Sbjct: 2 DLPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTA 61
Query: 181 NHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKN 240
NHGC GG M A FI + G+ +E++YPY +DG C N N
Sbjct: 62 NHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDGIC------------------NSTVN 103
Query: 241 APEVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQFYSE--------------- 285
AP V +D YE VP +E +L KAVANQPV+V +DA G+DFQ Y
Sbjct: 104 APVVSIDSYENVPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGSCNISANHAL 163
Query: 286 ---GYGATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPVK 337
GYG T++ +WIVKNSWG +W E GYIR R I+ +G CGIT ASYPVK
Sbjct: 164 TVVGYG-TENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPVK 217
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 224 bits (572), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 129/335 (38%), Positives = 176/335 (52%), Gaps = 38/335 (11%)
Query: 21 YQESDLASEECLWDLYERWR-SHHTVSRDLKEKQIRFNVFKQNLKRIHKVNQMDKPYKLR 79
Y + DL S E L L+ W +H+ ++ EK RF +FK NL I + N+ + Y L
Sbjct: 7 YSQDDLTSTERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSYWLG 66
Query: 80 LNRFADMTNHEFMSSRSSKVSHHRMLHGPRRQTGFMHGKTQDLPPSVDWRKQGAVTGVKD 139
LN FAD++N EF + + + F++ +LP +VDWRK+GAVT V+
Sbjct: 67 LNEFADLSNDEFNEKYVGSLIDATIEQSYDEE--FINEDIVNLPENVDWRKKGAVTPVRH 124
Query: 140 QGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDNHGCDGGLMEQALNFIAKS 199
QG CGSCWAFS V +VEGINKI+TG+L LSEQELVDC++ +HGC GG AL ++AK+
Sbjct: 125 QGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKN 184
Query: 200 EGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNAPEVILDGYEMVPESDENA 259
G+ YPY AK G+C P V G V ++E
Sbjct: 185 -GIHLRSKYPYKAKQGTCRAKQV-----------------GGPIVKTSGVGRVQPNNEGN 226
Query: 260 LMKAVANQPVAVAIDAGGKDFQFYSEGYGATQDGTKY-----------------WIVKNS 302
L+ A+A QPV+V +++ G+ FQ Y G GTK ++KNS
Sbjct: 227 LLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVDGAVTAVGYGKSGGKGYILIKNS 286
Query: 303 WGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPVK 337
WGT W EKGYIR+ R G+CG+ + YP K
Sbjct: 287 WGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTK 321
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 220 bits (560), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 125/331 (37%), Positives = 176/331 (53%), Gaps = 33/331 (9%)
Query: 21 YQESDLASEECLWDLYERWR-SHHTVSRDLKEKQIRFNVFKQNLKRIHKVNQMDKPYKLR 79
Y ++DL S E L L+E W H+ + +++ EK RF +FK NLK I + N+ + Y L
Sbjct: 51 YSQNDLTSTERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKNNSYWLG 110
Query: 80 LNRFADMTNHEFMSSRSSKVSHHRMLHGPRRQTGFMHGKTQDLPPSVDWRKQGAVTGVKD 139
LN FADM+N EF + ++ + + G ++P VDWR++GAVT VK+
Sbjct: 111 LNVFADMSNDEFKEKYTGSIAGNYTTTELSYEEVLNDGDV-NIPEYVDWRQKGAVTPVKN 169
Query: 140 QGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDNHGCDGGLMEQALNFIAKS 199
QG CGS WAFS V ++E I KI+TG L SEQEL+DCD+ ++GC+GG AL +A+
Sbjct: 170 QGSCGSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSALQLVAQY 229
Query: 200 EGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNAPEVILDGYEMVPESDENA 259
G+ +YPY C + +K DG V +E A
Sbjct: 230 -GIHYRNTYPYEGVQRYCR-----------------SREKGPYAAKTDGVRQVQPYNEGA 271
Query: 260 LMKAVANQPVAVAIDAGGKDFQFYSEG-------------YGATQDGTKYWIVKNSWGTD 306
L+ ++ANQPV+V ++A GKDFQ Y G A G Y +++NSWGT
Sbjct: 272 LLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPNYILIRNSWGTG 331
Query: 307 WEEKGYIRMLRGIDAEEGLCGITLEASYPVK 337
W E GYIR+ RG G+CG+ + YPVK
Sbjct: 332 WGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 362
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/234 (45%), Positives = 142/234 (60%), Gaps = 38/234 (16%)
Query: 122 LPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDN 181
LP VDWR +GAV +K+Q +CGSCWAFS V +VE INKI+TG+L SLSEQELVDCD +
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTAS 60
Query: 182 HGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNA 241
HGC+GG M A +I + G+ T+++YPY+A GSC+ YR+ + S
Sbjct: 61 HGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGSCKP--------YRLRVVS------- 105
Query: 242 PEVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQFYSE---------------- 285
++G++ V ++E+AL AVA+QPV+V ++A G FQ YS
Sbjct: 106 ----INGFQRVTRNNESALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGTAQNHGVV 161
Query: 286 --GYGATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPVK 337
GYG TQ G YWIV+NSWG +W +GYI M R + + GLCGI SYP K
Sbjct: 162 IVGYG-TQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPTK 214
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 209 bits (531), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 115/238 (48%), Positives = 142/238 (59%), Gaps = 39/238 (16%)
Query: 122 LPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDK-- 179
LP VDWR GAV +KDQG+CGSCWAFST+ +VEGINKI TG+L SLSEQELVDC +
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 180 DNHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDK 239
+ GCDGG M FI + G+ TE +YPYTA++G C L +
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDL-----------------Q 103
Query: 240 NAPEVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQFYSE-------------- 285
V +D YE VP ++E AL AVA QPV+VA++A G +FQ YS
Sbjct: 104 QEKYVSIDTYENVPYNNEWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHA 163
Query: 286 ----GYGATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPVKLH 339
GYG T+ G YWIVKNSWGT W E+GY+R+ R + G CGI +ASYPVK +
Sbjct: 164 VTIVGYG-TEGGIDYWIVKNSWGTTWGEEGYMRIQRNVGG-VGQCGIAKKASYPVKYY 219
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 205 bits (522), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 113/229 (49%), Positives = 133/229 (58%), Gaps = 35/229 (15%)
Query: 122 LPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDN 181
LP +DWRK+GAVT VK+QG+CGSCWAFSTV +VE IN+I+TG L SLSEQ+LVDC+K N
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCNKKN 60
Query: 182 HGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNA 241
HGC GG A +I + G+ TE +YPY A G C +V I
Sbjct: 61 HGCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQGPCRAAKKVVRI--------------- 105
Query: 242 PEVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQFYSEGYGATQDGTK------ 295
DGY+ VP +ENAL KAVA+QP VAIDA K FQ Y G + GTK
Sbjct: 106 -----DGYKGVPHCNENALKKAVASQPSVVAIDASSKQFQHYKSGIFSGPCGTKLNHGVV 160
Query: 296 -------YWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPVK 337
YWIV+NSWG W E+GYIRM R GLCGI YP K
Sbjct: 161 IVGYWKDYWIVRNSWGRYWGEQGYIRMKR--VGGCGLCGIARLPYYPTK 207
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 205 bits (522), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 115/229 (50%), Positives = 133/229 (58%), Gaps = 35/229 (15%)
Query: 122 LPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDN 181
LP +DWRK+GAVT VK+QG CGSCWAFSTV +VE IN+I+TG L SLSEQELVDCDK N
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKN 60
Query: 182 HGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNA 241
HGC GG A +I + G+ T+ +YPY A G C+ + +VSI
Sbjct: 61 HGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGPCQAASKVVSI--------------- 105
Query: 242 PEVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQFYSEGYGATQDGTK------ 295
DGY VP +E AL +AVA QP VAIDA FQ YS G + GTK
Sbjct: 106 -----DGYNGVPFCNEXALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTKLNHGVT 160
Query: 296 -------YWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPVK 337
YWIV+NSWG W EKGYIRMLR GLCGI YP K
Sbjct: 161 IVGYQANYWIVRNSWGRYWGEKGYIRMLR--VGGCGLCGIARLPYYPTK 207
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 205 bits (521), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 114/238 (47%), Positives = 141/238 (59%), Gaps = 39/238 (16%)
Query: 122 LPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDK-- 179
LP VDWR GAV +KDQG+CGS WAFST+ +VEGINKI TG+L SLSEQELVDC +
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 180 DNHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDK 239
+ GCDGG M FI + G+ TE +YPYTA++G C L +
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDL-----------------Q 103
Query: 240 NAPEVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQFYSE-------------- 285
V +D YE VP ++E AL AVA QPV+VA++A G +FQ YS
Sbjct: 104 QEKYVSIDTYENVPYNNEWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHA 163
Query: 286 ----GYGATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPVKLH 339
GYG T+ G YWIVKNSWGT W E+GY+R+ R + G CGI +ASYPVK +
Sbjct: 164 VTIVGYG-TEGGIDYWIVKNSWGTTWGEEGYMRIQRNVGG-VGQCGIAKKASYPVKYY 219
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 103/228 (45%), Positives = 140/228 (61%), Gaps = 31/228 (13%)
Query: 123 PPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDNH 182
P S+DWR++GAVT VK+Q CGSCWAFSTV ++EGINKI TG+L SLSEQEL+DC++ +H
Sbjct: 2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERRSH 61
Query: 183 GCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNAP 242
GCDGG +L ++ + G+ TE+ YPY K G C DK P
Sbjct: 62 GCDGGYQTTSLQYVVDN-GVHTEREYPYEKKQGRCRAK-----------------DKKGP 103
Query: 243 EVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQFYSEGY-----GATQD----- 292
+V + GY+ VP +DE +L++A+ANQPV+V D+ G+ FQFY G G D
Sbjct: 104 KVYITGYKYVPANDEISLIQAIANQPVSVVTDSRGRGFQFYKGGIYEGPCGTNTDHAVTA 163
Query: 293 ---GTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPVK 337
G Y ++KNSWG +W EKGYIR+ R +G CG+ + +P+K
Sbjct: 164 VGYGKTYLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFFPIK 211
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 198 bits (503), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 105/233 (45%), Positives = 135/233 (57%), Gaps = 37/233 (15%)
Query: 123 PPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDNH 182
P S+DWR +GAVT VK+QG CGS WAFST+ +VEGINKI TG L LSEQELVDCDK ++
Sbjct: 2 PQSIDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSY 61
Query: 183 GCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNAP 242
GC GG +L ++A + G+ T K YPY AK C DK P
Sbjct: 62 GCKGGYQTTSLQYVA-NNGVHTSKVYPYQAKQYKCRAT-----------------DKPGP 103
Query: 243 EVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQFYSE----------------- 285
+V + GY+ VP + E + + A+ANQP++V ++AGGK FQ Y
Sbjct: 104 KVKITGYKRVPSNXETSFLGALANQPLSVLVEAGGKPFQLYKSGVFDGPCGTKLDHAVTA 163
Query: 286 -GYGATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPVK 337
GYG T DG Y I+KNSWG +W EKGY+R+ R +G CG+ + YP K
Sbjct: 164 VGYG-TSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPFK 215
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 108/229 (47%), Positives = 129/229 (56%), Gaps = 35/229 (15%)
Query: 122 LPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDN 181
LP VDWR +GAV +K+QG+CGSCWAFSTV +VE IN+I+TG L SLSEQ+LVDC K N
Sbjct: 1 LPEHVDWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCSKKN 60
Query: 182 HGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNA 241
HGC GG ++A +I + G+ TE +YPY A G C +V I
Sbjct: 61 HGCKGGYFDRAYQYIIANGGIDTEANYPYKAFQGPCRAAKKVVRI--------------- 105
Query: 242 PEVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQFYSEGYGATQDGTK------ 295
DG + VP+ +ENAL AVA+QP VAIDA K FQ Y G GTK
Sbjct: 106 -----DGCKGVPQCNENALKNAVASQPSVVAIDASSKQFQHYKGGIFTGPCGTKLNHGVV 160
Query: 296 -------YWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPVK 337
YWIV+NSWG W E+GY RM R GLCGI YP K
Sbjct: 161 IVGYGKDYWIVRNSWGRHWGEQGYTRMKR--VGGCGLCGIARLPFYPTK 207
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 195 bits (495), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 134/236 (56%), Gaps = 39/236 (16%)
Query: 122 LPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDK-- 179
LP VDWR GAV +K QG CG CWAFS + +VEGINKI TG L SLSEQEL+DC +
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQ 60
Query: 180 DNHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDK 239
+ GC+GG + FI + G+ TE++YPYTA+DG C + +
Sbjct: 61 NTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGECNVDL-----------------Q 103
Query: 240 NAPEVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQFYSE-------------- 285
N V +D YE VP ++E AL AV QPV+VA+DA G F+ YS
Sbjct: 104 NEKYVTIDTYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPCGTAIDHA 163
Query: 286 ----GYGATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPVK 337
GYG T+ G YWIVKNSW T W E+GY+R+LR + G CGI SYPVK
Sbjct: 164 VTIVGYG-TEGGIDYWIVKNSWDTTWGEEGYMRILRNVGG-AGTCGIATMPSYPVK 217
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 190 bits (483), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 134/238 (56%), Gaps = 39/238 (16%)
Query: 122 LPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDK-- 179
LP VDWR GAV +K QG CG WAFS + +VEGINKI +G L SLSEQEL+DC +
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQ 60
Query: 180 DNHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDK 239
+ GCDGG + FI G+ TE++YPYTA+DG C++ +
Sbjct: 61 NTRGCDGGYITDGFQFIINDGGINTEENYPYTAQDGDCDVAL-----------------Q 103
Query: 240 NAPEVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQFYSE-------------- 285
+ V +D YE VP ++E AL AV QPV+VA+DA G F+ Y+
Sbjct: 104 DQKYVTIDTYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYASGIFTGPCGTAVDHA 163
Query: 286 ----GYGATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPVKLH 339
GYG T+ G YWIVKNSW T W E+GY+R+LR + G CGI SYPVK +
Sbjct: 164 IVIVGYG-TEGGVDYWIVKNSWDTTWGEEGYMRILRNVGG-AGTCGIATMPSYPVKYN 219
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 187 bits (474), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 127/340 (37%), Positives = 176/340 (51%), Gaps = 58/340 (17%)
Query: 26 LASEECLWDLYERWRSHHTVSRDLKEKQI-RFNVFKQNLKRIHKVNQMDKP-----YKLR 79
L EE L +E W+ H + K +I R ++++NLK I ++ ++ Y+L
Sbjct: 1 LYPEEILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYI-SIHNLEASLGVHTYELA 59
Query: 80 LNRFADMTNHEF---MSSRSSKVSHHRMLHGPRRQTGFMHGKTQDLPPSVDWRKQGAVTG 136
+N DMT+ E M+ +SH R T ++ P SVD+RK+G VT
Sbjct: 60 MNHLGDMTSEEVVQKMTGLKVPLSHSR-----SNDTLYIPEWEGRAPDSVDYRKKGYVTP 114
Query: 137 VKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDNHGCDGGLMEQALNFI 196
VK+QG+CGSCWAFS+V ++EG K KTG+L +LS Q LVDC +N GC GG M A ++
Sbjct: 115 VKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYV 174
Query: 197 AKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNAPEVILDGYEMVPESD 256
K+ G+ +E +YPY ++ SC M + + C GY +PE +
Sbjct: 175 QKNRGIDSEDAYPYVGQEESC-----MYNPTGKAAKCR-------------GYREIPEGN 216
Query: 257 ENALMKAVAN-QPVAVAIDAGGKDFQFYSE--------------------GYGATQDGTK 295
E AL +AVA PV+VAIDA FQFYS+ GYG Q G K
Sbjct: 217 EKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG-IQKGNK 275
Query: 296 YWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYP 335
+WI+KNSWG +W KGYI M R + CGI AS+P
Sbjct: 276 HWIIKNSWGENWGNKGYILMARN---KNNACGIANLASFP 312
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 182 bits (461), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 99/233 (42%), Positives = 128/233 (54%), Gaps = 35/233 (15%)
Query: 122 LPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDN 181
LP +VDWRK+GAVT V+ QG CGSCWAFS V +VEGINKI+TG+L LSEQELVDC++ +
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60
Query: 182 HGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNA 241
HGC GG AL ++AK+ G+ YPY AK G+C
Sbjct: 61 HGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGTCRAK-----------------QVGG 102
Query: 242 PEVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQFYSEGYGATQDGTKY----- 296
P V G V ++E L+ A+A QPV+V +++ G+ FQ Y G GTK
Sbjct: 103 PIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVEHAVT 162
Query: 297 ------------WIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPVK 337
++KNSWGT W EKGYIR+ R G+CG+ + YP K
Sbjct: 163 AVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTK 215
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 181 bits (460), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 99/233 (42%), Positives = 128/233 (54%), Gaps = 35/233 (15%)
Query: 122 LPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDN 181
LP +VDWRK+GAVT V+ QG CGSCWAFS V +VEGINKI+TG+L LSEQELVDC++ +
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60
Query: 182 HGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNA 241
HGC GG AL ++AK+ G+ YPY AK G+C
Sbjct: 61 HGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGTCRAK-----------------QVGG 102
Query: 242 PEVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQFYSEGYGATQDGTKY----- 296
P V G V ++E L+ A+A QPV+V +++ G+ FQ Y G GTK
Sbjct: 103 PIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVDHAVT 162
Query: 297 ------------WIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPVK 337
++KNSWGT W EKGYIR+ R G+CG+ + YP K
Sbjct: 163 AVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTK 215
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 181 bits (460), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 123/332 (37%), Positives = 171/332 (51%), Gaps = 59/332 (17%)
Query: 36 YERWRSHHTVSRDLKEKQIRFNVFKQNLKRIHKVNQMDK----PYKLRLNRFADMTNHEF 91
+ +W++ H + E+ R V+++N+K I NQ + + + +N F DMT+ EF
Sbjct: 8 WTKWKAMHNRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEF 67
Query: 92 MSSRSSKVSHHRMLHGPRRQTGFMHGKTQDLPPSVDWRKQGAVTGVKDQGRCGSCWAFST 151
+V + PR+ F + P SVDWR++G VT VK+QG+CGS WAFS
Sbjct: 68 -----RQVMNGLQNRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSSWAFSA 122
Query: 152 VVSVEGINKIKTGELWSLSEQELVDCD--KDNHGCDGGLMEQALNFIAKSEGLTTEKSYP 209
++EG KTG L SLSEQ LVDC + N GC+GGLM+ A ++ + GL +E+SYP
Sbjct: 123 TGALEGQMFRKTGRLISLSEQNLVDCSGPEGNEGCNGGLMDYAFQYVQDNGGLDSEESYP 182
Query: 210 YTAKDGSCEL-PTSMVSIIYRVHICSWNGDKNAPEVILDGYEMVPESDENALMKAVAN-Q 267
Y A + SC+ P V+ +A G+ +P+ E ALMKAVA
Sbjct: 183 YEATEESCKYNPKYSVA-------------NDA------GFVDIPK-QEKALMKAVATVG 222
Query: 268 PVAVAIDAGGKDFQFYSE--------------------GYG---ATQDGTKYWIVKNSWG 304
P++VAIDAG + F FY E GYG DG KYW+VKNSWG
Sbjct: 223 PISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDGNKYWLVKNSWG 282
Query: 305 TDWEEKGYIRMLRGIDAEEGLCGITLEASYPV 336
+W GY++M + CGI ASYP
Sbjct: 283 EEWGMGGYVKMAK---DRRNHCGIASAASYPT 311
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 178 bits (452), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 170/332 (51%), Gaps = 59/332 (17%)
Query: 36 YERWRSHHTVSRDLKEKQIRFNVFKQNLKRIHKVNQMDK----PYKLRLNRFADMTNHEF 91
+ +W++ H + E+ R V+++N+K I NQ + + + +N F DMT+ EF
Sbjct: 12 WTKWKAMHNRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEF 71
Query: 92 MSSRSSKVSHHRMLHGPRRQTGFMHGKTQDLPPSVDWRKQGAVTGVKDQGRCGSCWAFST 151
+V + PR+ F + P SVDWR++G VT VK+QG+CGS WAFS
Sbjct: 72 -----RQVMNGFQNRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSXWAFSA 126
Query: 152 VVSVEGINKIKTGELWSLSEQELVDCD--KDNHGCDGGLMEQALNFIAKSEGLTTEKSYP 209
++EG KTG L SLSEQ LVDC + N GC+GGLM+ A ++ + GL +E+SYP
Sbjct: 127 TGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYP 186
Query: 210 YTAKDGSCEL-PTSMVSIIYRVHICSWNGDKNAPEVILDGYEMVPESDENALMKAVAN-Q 267
Y A + SC+ P V+ +A G+ +P+ E ALMKAVA
Sbjct: 187 YEATEESCKYNPKYSVA-------------NDA------GFVDIPK-QEKALMKAVATVG 226
Query: 268 PVAVAIDAGGKDFQFYSE--------------------GYG---ATQDGTKYWIVKNSWG 304
P++VAIDAG + F FY E GYG D KYW+VKNSWG
Sbjct: 227 PISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWG 286
Query: 305 TDWEEKGYIRMLRGIDAEEGLCGITLEASYPV 336
+W GY++M + CGI ASYP
Sbjct: 287 EEWGMGGYVKMAK---DRRNHCGIASAASYPT 315
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 96/229 (41%), Positives = 127/229 (55%), Gaps = 31/229 (13%)
Query: 122 LPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDN 181
+P VDWR++GAVT VK+QG CGSCWAFS VV++EGI KI+TG L SEQEL+DCD+ +
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRS 60
Query: 182 HGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNA 241
+GC+GG AL +A+ G+ +YPY C + +K
Sbjct: 61 YGCNGGYPWSALQLVAQ-YGIHYRNTYPYEGVQRYCR-----------------SREKGP 102
Query: 242 PEVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQFYSEG-------------YG 288
DG V +E AL+ ++ANQPV+V ++A GKDFQ Y G
Sbjct: 103 YAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVA 162
Query: 289 ATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPVK 337
A G Y ++KNSWGT W E GYIR+ RG G+CG+ + YPVK
Sbjct: 163 AVGYGPNYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 176 bits (447), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 96/233 (41%), Positives = 128/233 (54%), Gaps = 35/233 (15%)
Query: 122 LPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDN 181
LP SVDWR +GAVT VK QG C SCWAFSTV +VEGINKIKTG L LSEQELVDCD +
Sbjct: 1 LPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDLQS 60
Query: 182 HGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNA 241
+GC+ G +L ++A++ G+ YPY AK +C
Sbjct: 61 YGCNRGYQSTSLQYVAQN-GIHLRAKYPYIAKQQTCRA-----------------NQVGG 102
Query: 242 PEVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQFYSEGYGATQDGTKY----- 296
P+V +G V ++E +L+ A+A+QPV+V +++ G+DFQ Y G GTK
Sbjct: 103 PKVKTNGVGRVQSNNEGSLLNAIAHQPVSVVVESAGRDFQNYKGGIFEGSCGTKVDHAVT 162
Query: 297 ------------WIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPVK 337
++KNSWG W E GYIR+ R G+CG+ + YP+K
Sbjct: 163 AVGYGKSGGKGYILIKNSWGPGWGENGYIRIRRASGNSPGVCGVYRSSYYPIK 215
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 95/229 (41%), Positives = 126/229 (55%), Gaps = 31/229 (13%)
Query: 122 LPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDN 181
+P VDWR++GAVT VK+QG CGSCWAFS VV++EGI KI+TG L SEQEL+DCD+ +
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 182 HGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNA 241
+GC+GG AL +A+ G+ +YPY C + +K
Sbjct: 61 YGCNGGYPWSALQLVAQ-YGIHYRNTYPYEGVQRYCR-----------------SREKGP 102
Query: 242 PEVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQFYSEG-------------YG 288
DG V ++ AL+ ++ANQPV+V + A GKDFQ Y G
Sbjct: 103 YAAKTDGVRQVQPYNQGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVA 162
Query: 289 ATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPVK 337
A G Y ++KNSWGT W E GYIR+ RG G+CG+ + YPVK
Sbjct: 163 AVGYGPNYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 175 bits (443), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 95/228 (41%), Positives = 125/228 (54%), Gaps = 31/228 (13%)
Query: 123 PPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDNH 182
P VDWR++GAVT VK+QG CGSCWAFS VV++EGI KI+TG L SEQEL+DCD+ ++
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSY 61
Query: 183 GCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNAP 242
GC+GG AL +A+ G+ +YPY C + +K
Sbjct: 62 GCNGGYPWSALQLVAQ-YGIHYRNTYPYEGVQRYCR-----------------SREKGPY 103
Query: 243 EVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQFYSEG-------------YGA 289
DG V ++ AL+ ++ANQPV+V + A GKDFQ Y G A
Sbjct: 104 AAKTDGVRQVQPYNQGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAA 163
Query: 290 TQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPVK 337
G Y ++KNSWGT W E GYIR+ RG G+CG+ + YPVK
Sbjct: 164 VGYGPNYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 173 bits (438), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 95/229 (41%), Positives = 126/229 (55%), Gaps = 31/229 (13%)
Query: 122 LPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDN 181
+P VDWR++GAVT VK+QG CGS WAFS VV++EGI KI+TG L SEQEL+DCD+ +
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 182 HGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNA 241
+GC+GG AL +A+ G+ +YPY C + +K
Sbjct: 61 YGCNGGYPWSALQLVAQ-YGIHYRNTYPYEGVQRYCR-----------------SREKGP 102
Query: 242 PEVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQFYSEG-------------YG 288
DG V +E AL+ ++ANQPV+V ++A GKDFQ Y G
Sbjct: 103 YAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVA 162
Query: 289 ATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPVK 337
A G Y ++KNSWGT W E GYIR+ RG G+CG+ + YPVK
Sbjct: 163 AVGYGPNYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/229 (41%), Positives = 126/229 (55%), Gaps = 31/229 (13%)
Query: 122 LPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDN 181
+P VDWR++GAVT VK+QG CGS WAFS VV++EGI KI+TG L SEQEL+DCD+ +
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRS 60
Query: 182 HGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNA 241
+GC+GG AL +A+ G+ +YPY C + +K
Sbjct: 61 YGCNGGYPWSALQLVAQ-YGIHYRNTYPYEGVQRYCR-----------------SREKGP 102
Query: 242 PEVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQFYSEG-------------YG 288
DG V +E AL+ ++ANQPV+V ++A GKDFQ Y G
Sbjct: 103 YAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVA 162
Query: 289 ATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPVK 337
A G Y ++KNSWGT W E GYIR+ RG G+CG+ + YPVK
Sbjct: 163 AVGYGPNYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 172 bits (436), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 101/234 (43%), Positives = 131/234 (55%), Gaps = 43/234 (18%)
Query: 123 PPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDNH 182
P SVD+RK+G VT VK+QG+CGSCWAFS+V ++EG K KTG+L +LS Q LVDC +N
Sbjct: 1 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 60
Query: 183 GCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNAP 242
GC GG M A ++ K+ G+ +E +YPY ++ SC M + + C
Sbjct: 61 GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC-----MYNPTGKAAKCR-------- 107
Query: 243 EVILDGYEMVPESDENALMKAVAN-QPVAVAIDAGGKDFQFYSE---------------- 285
GY +PE +E AL +AVA PV+VAIDA FQFYS+
Sbjct: 108 -----GYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHA 162
Query: 286 ----GYGATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYP 335
GYG Q G K+WI+KNSWG +W KGYI M R + CGI AS+P
Sbjct: 163 VLAVGYG-IQKGNKHWIIKNSWGENWGNKGYILMARN---KNNACGIANLASFP 212
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 172 bits (436), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 101/234 (43%), Positives = 131/234 (55%), Gaps = 43/234 (18%)
Query: 123 PPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDNH 182
P SVD+RK+G VT VK+QG+CGSCWAFS+V ++EG K KTG+L +LS Q LVDC +N
Sbjct: 4 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 63
Query: 183 GCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNAP 242
GC GG M A ++ K+ G+ +E +YPY ++ SC M + + C
Sbjct: 64 GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC-----MYNPTGKAAKCR-------- 110
Query: 243 EVILDGYEMVPESDENALMKAVAN-QPVAVAIDAGGKDFQFYSE---------------- 285
GY +PE +E AL +AVA PV+VAIDA FQFYS+
Sbjct: 111 -----GYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHA 165
Query: 286 ----GYGATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYP 335
GYG Q G K+WI+KNSWG +W KGYI M R + CGI AS+P
Sbjct: 166 VLAVGYG-IQKGNKHWIIKNSWGENWGNKGYILMARN---KNNACGIANLASFP 215
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 172 bits (435), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 101/234 (43%), Positives = 131/234 (55%), Gaps = 43/234 (18%)
Query: 123 PPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDNH 182
P SVD+RK+G VT VK+QG+CGSCWAFS+V ++EG K KTG+L +LS Q LVDC +N
Sbjct: 2 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61
Query: 183 GCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNAP 242
GC GG M A ++ K+ G+ +E +YPY ++ SC M + + C
Sbjct: 62 GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC-----MYNPTGKAAKCR-------- 108
Query: 243 EVILDGYEMVPESDENALMKAVAN-QPVAVAIDAGGKDFQFYSE---------------- 285
GY +PE +E AL +AVA PV+VAIDA FQFYS+
Sbjct: 109 -----GYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHA 163
Query: 286 ----GYGATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYP 335
GYG Q G K+WI+KNSWG +W KGYI M R + CGI AS+P
Sbjct: 164 VLAVGYG-IQKGNKHWIIKNSWGENWGNKGYILMARN---KNNACGIANLASFP 213
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 172 bits (435), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 94/229 (41%), Positives = 125/229 (54%), Gaps = 31/229 (13%)
Query: 122 LPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDN 181
+P VDWR++GAVT VK+QG CGS WAFS VV++EGI KI+TG L SEQEL+DCD+ +
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 182 HGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNA 241
+GC+GG AL +A+ G+ +YPY C + +K
Sbjct: 61 YGCNGGYPWSALQLVAQ-YGIHYRNTYPYEGVQRYCR-----------------SREKGP 102
Query: 242 PEVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQFYSEG-------------YG 288
DG V ++ AL+ ++ANQPV+V + A GKDFQ Y G
Sbjct: 103 YAAKTDGVRQVQPYNQGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVA 162
Query: 289 ATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPVK 337
A G Y ++KNSWGT W E GYIR+ RG G+CG+ + YPVK
Sbjct: 163 AVGYGPNYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 172 bits (435), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 100/234 (42%), Positives = 130/234 (55%), Gaps = 43/234 (18%)
Query: 123 PPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDNH 182
P S+D+RK+G VT VK+QG+CGSCWAFS+V ++EG K KTG+L +LS Q LVDC +N
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61
Query: 183 GCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNAP 242
GC GG M A ++ ++ G+ +E +YPY +D SC M + + C
Sbjct: 62 GCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESC-----MYNPTGKAAKCR-------- 108
Query: 243 EVILDGYEMVPESDENALMKAVAN-QPVAVAIDAGGKDFQFYSE---------------- 285
GY +PE +E AL +AVA PV+VAIDA FQFYS+
Sbjct: 109 -----GYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNLNHA 163
Query: 286 ----GYGATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYP 335
GYG Q G K+WI+KNSWG W KGYI M R + CGI AS+P
Sbjct: 164 VLAVGYG-IQKGNKHWIIKNSWGESWGNKGYILMARN---KNNACGIANLASFP 213
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 113/284 (39%), Positives = 148/284 (52%), Gaps = 55/284 (19%)
Query: 80 LNRFADMTNHEFMSSRSSKVSHHRMLHGPRRQTGFMHGKTQDLPPSVDWRKQGAVTGVKD 139
+N F DMT+ EF +V + PR+ F + P SVDWR++G VT VK+
Sbjct: 2 MNAFGDMTSEEF-----RQVMNGFQNRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKN 56
Query: 140 QGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCD--KDNHGCDGGLMEQALNFIA 197
QG+CGSCWAFS ++EG KTG L SLSEQ LVDC + N GC+GGLM+ A ++
Sbjct: 57 QGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQ 116
Query: 198 KSEGLTTEKSYPYTAKDGSCEL-PTSMVSIIYRVHICSWNGDKNAPEVILDGYEMVPESD 256
+ GL +E+SYPY A + SC+ P V+ +A G+ +P+
Sbjct: 117 DNGGLDSEESYPYEATEESCKYNPKYSVA-------------NDA------GFVDIPKQ- 156
Query: 257 ENALMKAVAN-QPVAVAIDAGGKDFQFYSE--------------------GYG---ATQD 292
E ALMKAVA P++VAIDAG + F FY E GYG D
Sbjct: 157 EKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESD 216
Query: 293 GTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPV 336
KYW+VKNSWG +W GY++M + CGI ASYP
Sbjct: 217 NNKYWLVKNSWGEEWGMGGYVKMAK---DRRNHCGIASAASYPT 257
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 100/232 (43%), Positives = 130/232 (56%), Gaps = 43/232 (18%)
Query: 125 SVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDNHGC 184
SVD+RK+G VT VK+QG+CGSCWAFS+V ++EG K KTG+L +LS Q LVDC +N GC
Sbjct: 2 SVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGC 61
Query: 185 DGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNAPEV 244
GG M A ++ K+ G+ +E +YPY ++ SC M + + C
Sbjct: 62 GGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC-----MYNPTGKAAKCR---------- 106
Query: 245 ILDGYEMVPESDENALMKAVAN-QPVAVAIDAGGKDFQFYSE------------------ 285
GY +PE +E AL +AVA PV+VAIDA FQFYS+
Sbjct: 107 ---GYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVL 163
Query: 286 --GYGATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYP 335
GYG Q G K+WI+KNSWG +W KGYI M R + CGI AS+P
Sbjct: 164 AVGYG-IQKGNKHWIIKNSWGENWGNKGYILMARN---KNNACGIANLASFP 211
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 123/339 (36%), Positives = 163/339 (48%), Gaps = 72/339 (21%)
Query: 34 DLYERWRSHHTVSRDLKEKQIRFNVFKQNLKRIHKVNQMDK----PYKLRLNRFADMTNH 89
DL+ +W+ + + + Q R N++++N+K I + N Y L LN+F DMT
Sbjct: 3 DLWHQWKRMYNKEYNGADDQHRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFE 62
Query: 90 EFMS------SRSSKVSHHRMLHGPRRQTGFMHGKTQDLPPSVDWRKQGAVTGVKDQGRC 143
EF + SR+S + H + + + +P +DWR+ G VT VKDQG C
Sbjct: 63 EFKAKYLTEMSRASDILSHGVPY---------EANNRAVPDKIDWRESGYVTEVKDQGNC 113
Query: 144 GSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDK--DNHGCDGGLMEQALNFIAKSEG 201
GS WAFST ++EG S SEQ+LVDC + N+GC GGLME A ++ K G
Sbjct: 114 GSGWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQYL-KQFG 172
Query: 202 LTTEKSYPYTAKDGSC----ELPTSMVSIIYRVHICSWNGDKNAPEVILDGYEMVPESDE 257
L TE SYPYTA +G C +L + V+ Y VH + EV L
Sbjct: 173 LETESSYPYTAVEGQCRYNKQLGVAKVTGFYTVH--------SGSEVELKNL-------- 216
Query: 258 NALMKAVANQPVAVAIDAGGKDFQFY--------------------SEGYGATQDGTKYW 297
A P AVA+D DF Y + GYG TQ GT YW
Sbjct: 217 -----VGAEGPAAVAVDV-ESDFMMYRSGIYQSQTCSPLRVNHAVLAVGYG-TQGGTDYW 269
Query: 298 IVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPV 336
IVKNSWG W E+GYIRM+R +CGI AS P+
Sbjct: 270 IVKNSWGLSWGERGYIRMVRN---RGNMCGIASLASLPM 305
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 169 bits (427), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 123/238 (51%), Gaps = 43/238 (18%)
Query: 123 PPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDNH 182
P S+DWRK+GAVT VKDQG CG CWAF ++EGI+ I TG L S+SEQ++VDCD
Sbjct: 2 PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXX 61
Query: 183 GCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNAP 242
GG + A ++ + G+ ++ +YPYT DG+C+L + + I
Sbjct: 62 XXXGGDADDAFRWVITNGGIASDANYPYTGVDGTCDLNKPIAARI--------------- 106
Query: 243 EVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQFYSE----------------- 285
DGY VP S +AL+ AVA QPV+V I FQ Y+
Sbjct: 107 ----DGYTNVPNS-SSALLDAVAKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVD 161
Query: 286 ------GYGATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPVK 337
GYG+ YWIVKNSWGT+W GYI + R + +G+C I SYP K
Sbjct: 162 HTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYPTK 219
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 116/318 (36%), Positives = 160/318 (50%), Gaps = 52/318 (16%)
Query: 40 RSHHTVSRDLKEKQIRFNVFKQNLKRIHKVNQMDKPYKLRLNRFADMTNHEFMSSRSSKV 99
++ V R + EK ++F V NL+ ++ Y L +N DMT+ E MS SS
Sbjct: 26 KNEEAVRRLIWEKNLKF-VMLHNLEHSMGMHS----YDLGMNHLGDMTSEEVMSLMSSL- 79
Query: 100 SHHRMLHGPRRQTGFMHGKTQDLPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGIN 159
R+ +R + + LP SVDWR++G VT VK QG CG+ WAFS V ++E
Sbjct: 80 ---RVPSQWQRNITYKSNPNRILPDSVDWREKGCVTEVKYQGSCGAAWAFSAVGALEAQL 136
Query: 160 KIKTGELWSLSEQELVDCDKD---NHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGS 216
K+KTG+L SLS Q LVDC + N GC+GG M A +I ++G+ ++ SYPY A D
Sbjct: 137 KLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQK 196
Query: 217 CELPTSMVSIIYRVHICSWNGDKNAPEVILDGYEMVPESDENALMKAVANQ-PVAVAIDA 275
C+ + YR CS Y +P E+ L +AVAN+ PV+V +DA
Sbjct: 197 CQYDSK-----YRAATCS-------------KYTELPYGREDVLKEAVANKGPVSVGVDA 238
Query: 276 GGKDFQFYSEGY----GATQ--------------DGTKYWIVKNSWGTDWEEKGYIRMLR 317
F Y G TQ +G +YW+VKNSWG ++ E+GYIRM R
Sbjct: 239 RHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMAR 298
Query: 318 GIDAEEGLCGITLEASYP 335
+ CGI SYP
Sbjct: 299 N---KGNHCGIASFPSYP 313
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 168 bits (425), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 130/240 (54%), Gaps = 47/240 (19%)
Query: 122 LPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDK-- 179
LP SVDWRK+G VT VK+Q +CGSCWAFS ++EG KTG+L SLSEQ LVDC +
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 180 DNHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDK 239
N GC+GG M +A ++ ++ GL +E+SYPY A D IC + +
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVD----------------EICKYRPEN 104
Query: 240 NAPEVILDGYEMVPESDENALMKAVAN-QPVAVAIDAGGKDFQFYSEGY----------- 287
+ + G+ +V E ALMKAVA P++VA+DAG FQFY G
Sbjct: 105 SVAQDT--GFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNL 162
Query: 288 ------------GATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYP 335
GA D +KYW+VKNSWG +W GY+++ + + CGI ASYP
Sbjct: 163 DHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNH---CGIATAASYP 219
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 167 bits (424), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 98/234 (41%), Positives = 132/234 (56%), Gaps = 43/234 (18%)
Query: 123 PPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDNH 182
P SVD+R++G VT VK+QG+CGSCWAFS+V ++EG K KTG+L +LS Q LVDC +N
Sbjct: 2 PDSVDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61
Query: 183 GCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNAP 242
GC GG M A ++ K+ G+ +E +YPY ++ SC M + + C
Sbjct: 62 GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC-----MYNPTGKAAKCR-------- 108
Query: 243 EVILDGYEMVPESDENALMKAVAN-QPVAVAIDAGGKDFQFYSE---------------- 285
GY +PE +E AL +AVA PV+VAIDA FQFYS+
Sbjct: 109 -----GYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHA 163
Query: 286 ----GYGATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYP 335
GYG ++ G K+WI+KNSWG +W GYI+M R + CGI AS+P
Sbjct: 164 VLAVGYGESK-GNKHWIIKNSWGENWGMGGYIKMARN---KNNACGIANLASFP 213
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 128/237 (54%), Gaps = 40/237 (16%)
Query: 121 DLPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDK- 179
+LP VDWR +G VT VKDQ CGSCWAFST ++EG + KTG+L SLSEQEL+DC +
Sbjct: 6 ELPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRA 65
Query: 180 -DNHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGD 238
N C GG M A ++ S G+ +E +YPY A+D C R C
Sbjct: 66 EGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDEEC-----------RAQSCE---- 110
Query: 239 KNAPEVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQFYSE------------- 285
V + G++ VP E A+ A+A PV++AI+A FQFY E
Sbjct: 111 ---KVVKILGFKDVPRRSEAAMKAALAKSPVSIAIEADQMPFQFYHEGVFDASCGTDLDH 167
Query: 286 -----GYGATQDGTK-YWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPV 336
GYG ++ K +WI+KNSWGT W GY+ M EEG CG+ L+AS+PV
Sbjct: 168 GVLLVGYGTDKESKKDFWIMKNSWGTGWGRDGYMYMAMH-KGEEGQCGLLLDASFPV 223
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 113/310 (36%), Positives = 150/310 (48%), Gaps = 62/310 (20%)
Query: 58 VFKQNLKRIH----KVNQMDKPYKLRLNRFADMTNHEFMS----SRSSKVSHHRMLHGPR 109
+FK N+ +I K + + Y +N+F DM+ EF++ ++ K H L P
Sbjct: 50 IFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSKEEFLAYVNRGKAQKPKHPENLRMPY 109
Query: 110 RQTGFMHGKTQDLPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSL 169
+ + L SVDWR AV+ VKDQG+CGS W+FST +VEG ++ G L SL
Sbjct: 110 VSS------KKPLAASVDWRSN-AVSEVKDQGQCGSSWSFSTTGAVEGQLALQRGRLTSL 162
Query: 170 SEQELVDCDKD--NHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSII 227
SEQ L+DC N GCDGG M+ A ++I G+ +E +YPY A+ C
Sbjct: 163 SEQNLIDCSSSYGNAGCDGGWMDSAFSYI-HDYGIMSESAYPYEAQGDYCRF-------- 213
Query: 228 YRVHICSWNGDKNAPEVILDGYEMVPESDENALMKAVANQ-PVAVAIDAGGKDFQFYSE- 285
D + L GY +P DEN+L AV PVAVAIDA + QFYS
Sbjct: 214 ----------DSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDA-TDELQFYSGG 262
Query: 286 -------------------GYGATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLC 326
GYG + +G YWI+KNSWG+ W E GY R +R C
Sbjct: 263 LFYDQTCNQSDLNHGVLVVGYG-SDNGQDYWILKNSWGSGWGESGYWRQVRNYGNN---C 318
Query: 327 GITLEASYPV 336
GI ASYP
Sbjct: 319 GIATAASYPA 328
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 97/234 (41%), Positives = 126/234 (53%), Gaps = 43/234 (18%)
Query: 123 PPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDNH 182
P S+D+RK+G VT VK+QG+CGSCWAFS+V ++EG K TG L +L+ Q LVDC +N
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVSEND 61
Query: 183 GCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNAP 242
GC GG M A ++ ++ G+ +E +YPY +D SC M + + C
Sbjct: 62 GCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESC-----MYNPTGKAAKCR-------- 108
Query: 243 EVILDGYEMVPESDENALMKAVAN-QPVAVAIDAGGKDFQFYSE---------------- 285
GY +PE +E AL +AVA PV+VAIDA FQFYS
Sbjct: 109 -----GYREIPEGNEAALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDALNHA 163
Query: 286 ----GYGATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYP 335
GYG Q G K+WI+KNSWG W GYI M R + CGI AS+P
Sbjct: 164 VLAVGYG-IQAGNKHWIIKNSWGESWGNAGYILMARN---KNNACGIANLASFP 213
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 164 bits (414), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 129/240 (53%), Gaps = 47/240 (19%)
Query: 122 LPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDK-- 179
LP SVDWRK+G VT VK+Q +CGS WAFS ++EG KTG+L SLSEQ LVDC +
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 180 DNHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDK 239
N GC+GG M +A ++ ++ GL +E+SYPY A D IC + +
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVD----------------EICKYRPEN 104
Query: 240 NAPEVILDGYEMVPESDENALMKAVAN-QPVAVAIDAGGKDFQFYSEGY----------- 287
+ + G+ +V E ALMKAVA P++VA+DAG FQFY G
Sbjct: 105 SVAQDT--GFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNL 162
Query: 288 ------------GATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYP 335
GA D +KYW+VKNSWG +W GY+++ + + CGI ASYP
Sbjct: 163 DHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAK---DKNNHCGIATAASYP 219
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 160 bits (405), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 94/229 (41%), Positives = 132/229 (57%), Gaps = 31/229 (13%)
Query: 122 LPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDN 181
+P S+DWR++GAVT V++QG CGSCW FS+V +VEGINKI TG+L SLSEQEL+DC++ +
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERRS 60
Query: 182 HGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNA 241
+GC GG AL ++A S G+ + YPY C +
Sbjct: 61 YGCRGGFPLYALQYVANS-GIHLRQYYPYEGVQRQCRASQA-----------------KG 102
Query: 242 PEVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQFYSEGYGATQDGTK------ 295
P+V DG VP ++E AL++ +A QPV++ ++A G+ FQ Y G A GT
Sbjct: 103 PKVKTDGVGRVPRNNEQALIQRIAIQPVSIVVEAKGRAFQNYRGGIFAGPCGTSIDHAVA 162
Query: 296 -------YWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPVK 337
Y ++KNSWGT W E GYIR+ RG +G CG+ ++ +P K
Sbjct: 163 AVGYGNDYILIKNSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVFPTK 211
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 157 bits (398), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 99/242 (40%), Positives = 129/242 (53%), Gaps = 48/242 (19%)
Query: 121 DLPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCD-- 178
+ P SVDWR++G VT VK+QG+CGSCWAFS ++EG KTG L SLSEQ LVDC
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 60
Query: 179 KDNHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGD 238
+ N GC+GGLM+ A ++ + GL +E+SYPY A + SC+ + + + G
Sbjct: 61 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNP-------KYSVANDTGF 113
Query: 239 KNAPEVILDGYEMVPESDENALMKAVAN-QPVAVAIDAGGKDFQFYSE------------ 285
+ P+ E ALMKAVA P++VAIDAG + F FY E
Sbjct: 114 VDIPK------------QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSED 161
Query: 286 --------GYG---ATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASY 334
GYG D KYW+VKNSWG +W GY++M + CGI ASY
Sbjct: 162 MDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAK---DRRNHCGIASAASY 218
Query: 335 PV 336
P
Sbjct: 219 PT 220
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 157 bits (397), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 131/241 (54%), Gaps = 50/241 (20%)
Query: 123 PPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCD--KD 180
P SVDWR++G VT VK+QG+CGSCWAFS ++EG KTG L SLSEQ LVDC +
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 181 NHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCEL-PTSMVSIIYRVHICSWNGDK 239
N GC+GGLM+ A ++ + GL +E+SYPY A + SC+ P V+
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVA-------------N 108
Query: 240 NAPEVILDGYEMVPESDENALMKAVAN-QPVAVAIDAGGKDFQFYSE------------- 285
+A G+ +P+ E ALMKAVA P++VAIDAG + F FY E
Sbjct: 109 DA------GFVDIPKQ-EKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDM 161
Query: 286 -------GYG---ATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYP 335
GYG D KYW+VKNSWG +W GY++M + CGI ASYP
Sbjct: 162 DHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAK---DRRNHCGIASAASYP 218
Query: 336 V 336
Sbjct: 219 T 219
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 157 bits (397), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 99/240 (41%), Positives = 128/240 (53%), Gaps = 48/240 (20%)
Query: 123 PPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCD--KD 180
P SVDWR++G VT VK+QG+CGSCWAFS ++EG KTG L SLSEQ LVDC +
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 181 NHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKN 240
N GC+GGLM+ A ++ + GL +E+SYPY A + SC+ + + + G +
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNP-------KYSVANDTGFVD 114
Query: 241 APEVILDGYEMVPESDENALMKAVAN-QPVAVAIDAGGKDFQFYSE-------------- 285
P+ E ALMKAVA P++VAIDAG + F FY E
Sbjct: 115 IPK------------QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD 162
Query: 286 ------GYG---ATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPV 336
GYG D KYW+VKNSWG +W GY++M + CGI ASYP
Sbjct: 163 HGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAK---DRRNHCGIASAASYPT 219
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 155 bits (391), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 126/236 (53%), Gaps = 43/236 (18%)
Query: 122 LPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKD- 180
LP SVDWR++G VT VK QG CG+CWAFS V ++E K+KTG+L SLS Q LVDC +
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 181 --NHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGD 238
N GC+GG M A +I ++G+ ++ SYPY A D C+ + YR CS
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSK-----YRAATCS---- 111
Query: 239 KNAPEVILDGYEMVPESDENALMKAVANQ-PVAVAIDAGGKDFQFYSEGY----GATQ-- 291
Y +P E+ L +AVAN+ PV+V +DA F Y G TQ
Sbjct: 112 ---------KYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNV 162
Query: 292 ------------DGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYP 335
+G +YW+VKNSWG ++ E+GYIRM R + CGI SYP
Sbjct: 163 NHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 215
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 155 bits (391), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 99/237 (41%), Positives = 130/237 (54%), Gaps = 45/237 (18%)
Query: 123 PPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCD--KD 180
P SVDWR++G VT VK+QG+CG+ +AFS ++EG KTG L SLSEQ LVDC +
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 181 NHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKN 240
N GC+GGLM+ A ++ + GL +E+SYPY A + SC+ Y V
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPK-----YSV---------- 106
Query: 241 APEVILDGYEMVPESDENALMKAVAN-QPVAVAIDAGGKDFQFYSE-------------- 285
A +V G+ +P+ E ALMKAVA P++VAIDAG + F FY E
Sbjct: 107 ANDV---GFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFSSDCSSSSLN 162
Query: 286 ------GYGATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPV 336
GYG + KYW+VKNSWG +W GY++M + CGI ASYP
Sbjct: 163 HAMLVVGYGFISNNQKYWLVKNSWGEEWGMGGYVKMAK---DRRNHCGIASAASYPT 216
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 154 bits (390), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 126/236 (53%), Gaps = 43/236 (18%)
Query: 122 LPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKD- 180
LP SVDWR++G VT VK QG CG+CWAFS V ++E K+KTG+L SLS Q LVDC +
Sbjct: 4 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 63
Query: 181 --NHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGD 238
N GC+GG M A +I ++G+ ++ SYPY A D C+ + YR CS
Sbjct: 64 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSK-----YRAATCS---- 114
Query: 239 KNAPEVILDGYEMVPESDENALMKAVANQ-PVAVAIDAGGKDFQFYSEGY----GATQ-- 291
Y +P E+ L +AVAN+ PV+V +DA F Y G TQ
Sbjct: 115 ---------KYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNV 165
Query: 292 ------------DGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYP 335
+G +YW+VKNSWG ++ E+GYIRM R + CGI SYP
Sbjct: 166 NHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 218
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 154 bits (389), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 126/236 (53%), Gaps = 43/236 (18%)
Query: 122 LPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKD- 180
LP SVDWR++G VT VK QG CG+CWAFS V ++E K+KTG+L SLS Q LVDC +
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 181 --NHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGD 238
N GC+GG M A +I ++G+ ++ SYPY A D C+ + YR CS
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSK-----YRAATCS---- 111
Query: 239 KNAPEVILDGYEMVPESDENALMKAVANQ-PVAVAIDAGGKDFQFYSEGY----GATQ-- 291
Y +P E+ L +AVAN+ PV+V +DA F Y G TQ
Sbjct: 112 ---------KYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNV 162
Query: 292 ------------DGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYP 335
+G +YW+VKNSWG ++ E+GYIRM R + CGI SYP
Sbjct: 163 NHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 215
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 154 bits (389), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 125/236 (52%), Gaps = 43/236 (18%)
Query: 122 LPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKD- 180
LP SVDWR++G VT VK QG CG+CWAFS V ++E K+KTG+L SLS Q LVDC
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKK 60
Query: 181 --NHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGD 238
N GC+GG M A +I ++G+ ++ SYPY A D C+ ++ YR C
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSA-----YRAATCR---- 111
Query: 239 KNAPEVILDGYEMVPESDENALMKAVANQ-PVAVAIDAGGKDFQFYSEGY----GATQ-- 291
Y +P E+ L +AVAN+ PV+V +DA F Y G TQ
Sbjct: 112 ---------KYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNV 162
Query: 292 ------------DGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYP 335
+G +YW+VKNSWG ++ EKGYIRM R + CGI SYP
Sbjct: 163 NHGVLVVGYGDLNGKEYWLVKNSWGHNFGEKGYIRMARN---KGNHCGIASFPSYP 215
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 154 bits (389), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 125/236 (52%), Gaps = 43/236 (18%)
Query: 122 LPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKD- 180
LP SVDWR++G VT VK QG CG+CWAFS V ++E K+KTG+L SLS Q LVDC +
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 181 --NHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGD 238
N GC+GG M A +I ++G+ ++ SYPY A D C+ + YR C
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSK-----YRAATCR---- 111
Query: 239 KNAPEVILDGYEMVPESDENALMKAVANQ-PVAVAIDAGGKDFQFYSEGY----GATQ-- 291
Y +P E+ L +AVAN+ PV+V +DA F Y G TQ
Sbjct: 112 ---------KYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNV 162
Query: 292 ------------DGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYP 335
+G +YW+VKNSWG ++ EKGYIRM R + CGI SYP
Sbjct: 163 NHGVLVVGYGDLNGKEYWLVKNSWGHNFGEKGYIRMARN---KGNHCGIASFPSYP 215
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 154 bits (389), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 126/236 (53%), Gaps = 43/236 (18%)
Query: 122 LPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKD- 180
LP SVDWR++G VT VK QG CG+CWAFS V ++E K+KTG+L SLS Q LVDC +
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 181 --NHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGD 238
N GC+GG M A +I ++G+ ++ SYPY A D C+ + YR CS
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSK-----YRAATCS---- 112
Query: 239 KNAPEVILDGYEMVPESDENALMKAVANQ-PVAVAIDAGGKDFQFYSEGY----GATQ-- 291
Y +P E+ L +AVAN+ PV+V +DA F Y G TQ
Sbjct: 113 ---------KYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNV 163
Query: 292 ------------DGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYP 335
+G +YW+VKNSWG ++ E+GYIRM R + CGI SYP
Sbjct: 164 NHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 216
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 154 bits (389), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 98/242 (40%), Positives = 128/242 (52%), Gaps = 48/242 (19%)
Query: 121 DLPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCD-- 178
+ P SVDWR++G VT VK+QG+CGS WAFS ++EG KTG L SLSEQ LVDC
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 60
Query: 179 KDNHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGD 238
+ N GC+GGLM+ A ++ + GL +E+SYPY A + SC+ + + + G
Sbjct: 61 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNP-------KYSVANDTGF 113
Query: 239 KNAPEVILDGYEMVPESDENALMKAVAN-QPVAVAIDAGGKDFQFYSE------------ 285
+ P+ E ALMKAVA P++VAIDAG + F FY E
Sbjct: 114 VDIPK------------QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSED 161
Query: 286 --------GYG---ATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASY 334
GYG D KYW+VKNSWG +W GY++M + CGI ASY
Sbjct: 162 MDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAK---DRRNHCGIASAASY 218
Query: 335 PV 336
P
Sbjct: 219 PT 220
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 154 bits (388), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 127/240 (52%), Gaps = 48/240 (20%)
Query: 123 PPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCD--KD 180
P SVDWR++G VT VK+QG+CGS WAFS ++EG KTG L SLSEQ LVDC +
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 181 NHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKN 240
N GC+GGLM+ A ++ + GL +E+SYPY A + SC+ + + + G +
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNP-------KYSVANDTGFVD 114
Query: 241 APEVILDGYEMVPESDENALMKAVAN-QPVAVAIDAGGKDFQFYSE-------------- 285
P+ E ALMKAVA P++VAIDAG + F FY E
Sbjct: 115 IPK------------QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD 162
Query: 286 ------GYG---ATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPV 336
GYG D KYW+VKNSWG +W GY++M + CGI ASYP
Sbjct: 163 HGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAK---DRRNHCGIASAASYPT 219
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 126/236 (53%), Gaps = 43/236 (18%)
Query: 122 LPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKD- 180
LP SVDWR++G VT VK QG CG+CWAFS V ++E K+KTG+L SLS Q LVDC +
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 181 --NHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGD 238
N GC+GG M A +I ++G+ ++ SYPY A D C+ + YR CS
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSK-----YRAATCS---- 112
Query: 239 KNAPEVILDGYEMVPESDENALMKAVANQ-PVAVAIDAGGKDFQFYSEGY----GATQ-- 291
Y +P E+ L +AVAN+ PV+V +DA F Y G TQ
Sbjct: 113 ---------KYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNV 163
Query: 292 ------------DGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYP 335
+G +YW+VKNSWG ++ E+GYIRM R + CGI SYP
Sbjct: 164 NHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 216
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 127/240 (52%), Gaps = 48/240 (20%)
Query: 123 PPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCD--KD 180
P SVDWR++G VT VK+QG+CGS WAFS ++EG KTG L SLSEQ LVDC +
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 181 NHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKN 240
N GC+GGLM+ A ++ + GL +E+SYPY A + SC+ + + + G +
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNP-------KYSVANDTGFVD 114
Query: 241 APEVILDGYEMVPESDENALMKAVAN-QPVAVAIDAGGKDFQFYSE-------------- 285
P+ E ALMKAVA P++VAIDAG + F FY E
Sbjct: 115 IPK------------QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD 162
Query: 286 ------GYG---ATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPV 336
GYG D KYW+VKNSWG +W GY++M + CGI ASYP
Sbjct: 163 HGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAK---DRRNHCGIASAASYPT 219
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/236 (40%), Positives = 126/236 (53%), Gaps = 43/236 (18%)
Query: 122 LPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKD- 180
LP SVDWR++G VT VK QG CG+CWAFS V ++E K+KTG+L +LS Q LVDC +
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEK 60
Query: 181 --NHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGD 238
N GC+GG M A +I ++G+ ++ SYPY A D C+ + YR CS
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSK-----YRAATCS---- 111
Query: 239 KNAPEVILDGYEMVPESDENALMKAVANQ-PVAVAIDAGGKDFQFYSEGY----GATQ-- 291
Y +P E+ L +AVAN+ PV+V +DA F Y G TQ
Sbjct: 112 ---------KYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNV 162
Query: 292 ------------DGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYP 335
+G +YW+VKNSWG ++ E+GYIRM R + CGI SYP
Sbjct: 163 NHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 215
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 130/241 (53%), Gaps = 50/241 (20%)
Query: 123 PPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCD--KD 180
P SVDWR++G VT VK+QG+CGS WAFS ++EG KTG L SLSEQ LVDC +
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 181 NHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCEL-PTSMVSIIYRVHICSWNGDK 239
N GC+GGLM+ A ++ + GL +E+SYPY A + SC+ P V+
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVA-------------N 108
Query: 240 NAPEVILDGYEMVPESDENALMKAVAN-QPVAVAIDAGGKDFQFYSE------------- 285
+A G+ +P+ E ALMKAVA P++VAIDAG + F FY E
Sbjct: 109 DA------GFVDIPKQ-EKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDM 161
Query: 286 -------GYG---ATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYP 335
GYG D KYW+VKNSWG +W GY++M + CGI ASYP
Sbjct: 162 DHGVLVVGYGFESTESDDNKYWLVKNSWGEEWGMGGYVKMAK---DRRNHCGIASAASYP 218
Query: 336 V 336
Sbjct: 219 T 219
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 126/250 (50%), Gaps = 39/250 (15%)
Query: 121 DLPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKD 180
D P S DW K+G +T VK QG+CGS WAFS ++E + I TG L SLSEQEL+DC +
Sbjct: 1 DAPESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDE 60
Query: 181 NHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSC---ELPTSMVSIIYRVHICSWNG 237
+ GC G Q+ ++ K G+ +E YPY A+DG C E+ + Y V I S
Sbjct: 61 SEGCYNGWHYQSFEWVVKHGGIASEADYPYKARDGKCKANEIQDKVTIDNYGVQILS--- 117
Query: 238 DKNAPEVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQFYSEG----------Y 287
E E++L V QP++V+IDA KDF FYS G Y
Sbjct: 118 -----------NESTESEAESSLQSFVLEQPISVSIDA--KDFHFYSGGIYDGGNCSSPY 164
Query: 288 G----------ATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPVK 337
G ++DG YWI KNSWG DW GYIR+ R G+CG+ ASYP+
Sbjct: 165 GINHFVLIVGYGSEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPII 224
Query: 338 LHPENSRHPR 347
E + R
Sbjct: 225 EKSETLKFGR 234
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 152 bits (383), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 110/338 (32%), Positives = 154/338 (45%), Gaps = 65/338 (19%)
Query: 37 ERWRSHHTVSR----DLKEKQIRFNVFKQNLKRIHKVNQMDK----PYKLRLNRFADMTN 88
E+W + T + KE+ R +F++ L+ + N+ + Y L +N F DMT
Sbjct: 20 EKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDMTP 79
Query: 89 HEFMSSRSSKVSHHRMLHGPRRQTGFMHGKTQDL--------PPSVDWRKQGAVTGVKDQ 140
E + +H ++ + G +DL P S DWR QG V+ VK+Q
Sbjct: 80 EEMKA-----YTHGLIMPADLHKNGIPIKTREDLGLNASVRYPASFDWRDQGMVSPVKNQ 134
Query: 141 GRCGSCWAFSTVVSVEGINKIKTGELW--SLSEQELVDCDKDNHGCDGGLMEQALNFIAK 198
G CGS WAFS+ ++E KI G + S+SEQ+LVDC + GC GG M A ++A+
Sbjct: 135 GSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPNALGCSGGWMNDAFTYVAQ 194
Query: 199 SEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNAPEVILDGYEMVPESDEN 258
+ G+ +E +YPY DG+C D N L GY + DEN
Sbjct: 195 NGGIDSEGAYPYEMADGNCHY------------------DPNQVAARLSGYVYLSGPDEN 236
Query: 259 ALMKAVANQ-PVAVAIDA--------GGKDFQFYSE-----------GYGATQDGTKYWI 298
L VA + PVAVA DA GG + E GYG ++G YW+
Sbjct: 237 MLADMVATKGPVAVAFDADDPFGSYSGGVYYNPTCETNKFTHAVLIVGYG-NENGQDYWL 295
Query: 299 VKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPV 336
VKNSWG W GY ++ R + CGI AS P
Sbjct: 296 VKNSWGDGWGLDGYFKIARNANNH---CGIAGVASVPT 330
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 150 bits (379), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 95/236 (40%), Positives = 125/236 (52%), Gaps = 43/236 (18%)
Query: 122 LPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKD- 180
LP SVDWR++G VT VK QG CG+ WAFS V ++E K+KTG+L SLS Q LVDC +
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 181 --NHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGD 238
N GC+GG M A +I ++G+ ++ SYPY A D C+ + YR CS
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSK-----YRAATCS---- 112
Query: 239 KNAPEVILDGYEMVPESDENALMKAVANQ-PVAVAIDAGGKDFQFYSEGY----GATQ-- 291
Y +P E+ L +AVAN+ PV+V +DA F Y G TQ
Sbjct: 113 ---------KYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNV 163
Query: 292 ------------DGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYP 335
+G +YW+VKNSWG ++ E+GYIRM R + CGI SYP
Sbjct: 164 NHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 216
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/236 (40%), Positives = 125/236 (52%), Gaps = 43/236 (18%)
Query: 122 LPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKD- 180
LP SVDWR++G VT VK QG CG+ WAFS V ++E K+KTG+L SLS Q LVDC +
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 181 --NHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGD 238
N GC+GG M A +I ++G+ ++ SYPY A D C+ + YR CS
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSK-----YRAATCS---- 111
Query: 239 KNAPEVILDGYEMVPESDENALMKAVANQ-PVAVAIDAGGKDFQFYSEGY----GATQ-- 291
Y +P E+ L +AVAN+ PV+V +DA F Y G TQ
Sbjct: 112 ---------KYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNV 162
Query: 292 ------------DGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYP 335
+G +YW+VKNSWG ++ E+GYIRM R + CGI SYP
Sbjct: 163 NHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 215
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/236 (40%), Positives = 125/236 (52%), Gaps = 43/236 (18%)
Query: 122 LPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKD- 180
LP SVDWR++G VT VK QG CG+ WAFS V ++E K+KTG+L SLS Q LVDC +
Sbjct: 3 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 62
Query: 181 --NHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGD 238
N GC+GG M A +I ++G+ ++ SYPY A D C+ + YR CS
Sbjct: 63 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSK-----YRAATCS---- 113
Query: 239 KNAPEVILDGYEMVPESDENALMKAVANQ-PVAVAIDAGGKDFQFYSEGY----GATQ-- 291
Y +P E+ L +AVAN+ PV+V +DA F Y G TQ
Sbjct: 114 ---------KYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNV 164
Query: 292 ------------DGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYP 335
+G +YW+VKNSWG ++ E+GYIRM R + CGI SYP
Sbjct: 165 NHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 217
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/236 (40%), Positives = 125/236 (52%), Gaps = 43/236 (18%)
Query: 122 LPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKD- 180
LP SVDWR++G VT VK QG CG+ WAFS V ++E K+KTG+L SLS Q LVDC +
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 181 --NHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGD 238
N GC+GG M A +I ++G+ ++ SYPY A D C+ + YR CS
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDLKCQYDSK-----YRAATCS---- 111
Query: 239 KNAPEVILDGYEMVPESDENALMKAVANQ-PVAVAIDAGGKDFQFYSEGY----GATQ-- 291
Y +P E+ L +AVAN+ PV+V +DA F Y G TQ
Sbjct: 112 ---------KYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNV 162
Query: 292 ------------DGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYP 335
+G +YW+VKNSWG ++ E+GYIRM R + CGI SYP
Sbjct: 163 NHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 215
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/242 (36%), Positives = 129/242 (53%), Gaps = 50/242 (20%)
Query: 123 PPSVDWRKQG-AVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDK-- 179
PPS+DWRK+G V+ VK+QG CGSCW FST ++E I TG++ SL+EQ+LVDC +
Sbjct: 2 PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNF 61
Query: 180 DNHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCEL-PTSMVSIIYRVHICSWNGD 238
+NHGC GGL QA +I ++G+ E +YPY +D C+ P ++ +
Sbjct: 62 NNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFV----------- 110
Query: 239 KNAPEVILDGYEMVPESDENALMKAVA-NQPVAVAIDAGGKDFQFYSEG-YGAT------ 290
K+ + ++ DE A+++AVA PV+ A + DF Y +G Y +T
Sbjct: 111 KDVANITMN--------DEEAMVEAVALYNPVSFAFEV-TNDFLMYRKGIYSSTSCHKTP 161
Query: 291 --------------QDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPV 336
++G YWIVKNSWG W GY + RG + +CG+ ASYP+
Sbjct: 162 DKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERG----KNMCGLAACASYPI 217
Query: 337 KL 338
L
Sbjct: 218 PL 219
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 121/217 (55%), Gaps = 36/217 (16%)
Query: 123 PPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDNH 182
P +VDWR++GAVT VKDQG+CGSCWAFST+ ++EG ++ L SLSEQ LV CD +
Sbjct: 2 PAAVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDTIDF 61
Query: 183 GCDGGLMEQALNFIAKSEG--LTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKN 240
GC GGLM+ A N+I S G + TE SYPY + +G E P C NG +
Sbjct: 62 GCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNG--EQPQ-----------CQMNGHEI 108
Query: 241 APEVILDGYEMVPESDENALMKAVA-NQPVAVAIDA-------GGKDFQFYSE------- 285
I D ++ P+ DE+A+ +A N P+A+A+DA GG SE
Sbjct: 109 G-AAITDHVDL-PQ-DEDAIAAYLAENGPLAIAVDATSFMDYNGGILTSCTSEQLDHGVL 165
Query: 286 --GYGATQDGTKYWIVKNSWGTDWEEKGYIRMLRGID 320
GY + YWI+KNSW W E GYIR+ +G +
Sbjct: 166 LVGYNDASN-PPYWIIKNSWSNMWGEDGYIRIEKGTN 201
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 100/167 (59%), Gaps = 22/167 (13%)
Query: 123 PPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCD--KD 180
P SVDWR++G VT VK+QG+CGSCWAFS ++EG KTG L SLSEQ LVDC +
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 181 NHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKN 240
N GC+GGLM+ A ++ + GL +E+SYPY A + SC+ + + + G +
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNP-------KYSVANDTGFVD 114
Query: 241 APEVILDGYEMVPESDENALMKAVAN-QPVAVAIDAGGKDFQFYSEG 286
P+ E ALMKAVA P++VAIDAG + F FY EG
Sbjct: 115 IPK------------QEKALMKAVATVGPISVAIDAGHESFLFYKEG 149
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 107/214 (50%), Gaps = 34/214 (15%)
Query: 123 PPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDNH 182
P +VDWR +GAVT VKDQG+CGSCWAFS + +VE + L +LSEQ LV CDK +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61
Query: 183 GCDGGLMEQALNFIAKSE--GLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKN 240
GC GGLM A +I + + TE SYPY + +G T+ +
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTT---------------SGH 106
Query: 241 APEVILDGYEMVPESDENALMKAVANQPVAVAIDA-------GGKDFQFYSE-------- 285
+ G+ +P+ + N PVAVA+DA GG SE
Sbjct: 107 TVGATITGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEQLDHGVLL 166
Query: 286 -GYGATQDGTKYWIVKNSWGTDWEEKGYIRMLRG 318
GY + YWI+KNSW T W E+GYIR+ +G
Sbjct: 167 VGYNDSA-AVPYWIIKNSWTTQWGEEGYIRIAKG 199
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 107/214 (50%), Gaps = 34/214 (15%)
Query: 123 PPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDNH 182
P +VDWR +GAVT VKDQG+CGSCWAFS + +VE + L +LSEQ LV CDK +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61
Query: 183 GCDGGLMEQALNFIAKSE--GLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKN 240
GC GGLM A +I + + TE SYPY + +G T+ +
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTT---------------SGH 106
Query: 241 APEVILDGYEMVPESDENALMKAVANQPVAVAIDA-------GGKDFQFYSE-------- 285
+ G+ +P+ + N PVAVA+DA GG SE
Sbjct: 107 TVGATITGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEALDHGVLL 166
Query: 286 -GYGATQDGTKYWIVKNSWGTDWEEKGYIRMLRG 318
GY + YWI+KNSW T W E+GYIR+ +G
Sbjct: 167 VGYNDSA-AVPYWIIKNSWTTQWGEEGYIRIAKG 199
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 108/216 (50%), Gaps = 38/216 (17%)
Query: 123 PPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDNH 182
P +VDWR +GAVT VKDQG+CGSCWAFS + +VE + L +L+EQ LV CDK +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKTDS 61
Query: 183 GCDGGLMEQALNFIAKSE--GLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKN 240
GC GGLM A +I + + TE SYPY + +G T+ +
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTT---------------SGH 106
Query: 241 APEVILDGYEMVPESDENALMKAVANQPVAVAIDA-------GGKDFQFYSE-------- 285
+ G+ +P+ + N PVAVA+DA GG SE
Sbjct: 107 TVGATITGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEQLDHGVLL 166
Query: 286 -GYGATQDGTK--YWIVKNSWGTDWEEKGYIRMLRG 318
GY DG YWI+KNSW T W E+GYIR+ +G
Sbjct: 167 VGY---NDGAAVPYWIIKNSWTTQWGEEGYIRIAKG 199
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 108/216 (50%), Gaps = 38/216 (17%)
Query: 123 PPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDNH 182
P +VDWR +GAVT VKDQG+CGSCWAFS + +VE + L +L+EQ LV CDK +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKTDS 61
Query: 183 GCDGGLMEQALNFIAKSE--GLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKN 240
GC GGLM A +I + + TE SYPY + +G T+ +
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTT---------------SGH 106
Query: 241 APEVILDGYEMVPESDENALMKAVANQPVAVAIDA-------GGKDFQFYSE-------- 285
+ G+ +P+ + N PVAVA+DA GG SE
Sbjct: 107 TVGATITGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEQLDHGVLL 166
Query: 286 -GYGATQDGTK--YWIVKNSWGTDWEEKGYIRMLRG 318
GY DG YWI+KNSW T W E+GYIR+ +G
Sbjct: 167 VGY---NDGAAVPYWIIKNSWTTQWGEEGYIRIAKG 199
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 99/167 (59%), Gaps = 22/167 (13%)
Query: 123 PPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCD--KD 180
P SVDWR++G VT VK+QG+CGS WAFS ++EG KTG L SLSEQ LVDC +
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 181 NHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKN 240
N GC+GGLM+ A ++ + GL +E+SYPY A + SC+ + + + G +
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNP-------KYSVANDTGFVD 114
Query: 241 APEVILDGYEMVPESDENALMKAVAN-QPVAVAIDAGGKDFQFYSEG 286
P+ E ALMKAVA P++VAIDAG + F FY EG
Sbjct: 115 IPK------------QEKALMKAVATVGPISVAIDAGHESFLFYKEG 149
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 112/237 (47%), Gaps = 49/237 (20%)
Query: 123 PPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDNH 182
PP DWR +GAVT VKDQG CGSCWAFS +VEG + G L SLSEQEL+DCDK +
Sbjct: 2 PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDK 61
Query: 183 GCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNAP 242
C GGL A + I GL TE Y Y SC+ + A
Sbjct: 62 ACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCQFSA-----------------EKAK 104
Query: 243 EVILDGYEMVPESDENALMKAVANQ-PVAVAIDAGGKDFQFYSE---------------- 285
I D E+ +E L +A + P++VAI+A G QFY
Sbjct: 105 VYIQDSVEL--SQNEQKLAAWLAKRGPISVAINAFG--MQFYRHGISRPLRPLCSPWLID 160
Query: 286 ------GYGATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPV 336
GYG D +W +KNSWGTDW EKGY + RG G CG+ AS V
Sbjct: 161 HAVLLVGYGQRSD-VPFWAIKNSWGTDWGEKGYYYLHRG----SGACGVNTMASSAV 212
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 110/239 (46%), Gaps = 47/239 (19%)
Query: 125 SVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDNHGC 184
+ DWR G VT VKDQ CGSCWAFS+V SVE I+ L+ SEQELVDC N+GC
Sbjct: 23 AYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVKNNGC 82
Query: 185 DGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNAPEV 244
GG + A + + GL ++ YPY + LP + N +
Sbjct: 83 YGGYITNAFDDMIDLGGLCSQDDYPYVSN-----LPETC------------NLKRCNERY 125
Query: 245 ILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQFYSEGY-----GATQD------- 292
+ Y +P+ ++ + P++++I A DF FY G+ GA +
Sbjct: 126 TIKSYVSIPDDKFKEALRYLG--PISISI-AASDDFAFYRGGFYDGECGAAPNHAVILVG 182
Query: 293 -GTK--------------YWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPV 336
G K Y+I+KNSWG+DW E GYI + + + C I EA P+
Sbjct: 183 YGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVPL 241
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 117/242 (48%), Gaps = 53/242 (21%)
Query: 125 SVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDNHGC 184
+ DWR VT VKDQ CGSCWAFS++ SVE I+ +L +LSEQELVDC N+GC
Sbjct: 21 AYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGC 80
Query: 185 DGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNAPEV 244
+GGL+ A + + G+ + YPY + + P ++C N D+ +
Sbjct: 81 NGGLINNAFEDMIELGGICPDGDYPYVS-----DAP----------NLC--NIDRCTEKY 123
Query: 245 ILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQFYSEG------------------ 286
+ Y VP++ ++ + ++VA+ DF FY EG
Sbjct: 124 GIKNYLSVPDNKLKEALRFLGPISISVAVS---DDFAFYKEGIFDGECGDQLNHAVMLVG 180
Query: 287 YGA-------TQDGTK--YWIVKNSWGTDWEEKGYIRMLRGIDAEEGL---CGITLEASY 334
+G T+ G K Y+I+KNSWG W E+G+I + E GL CG+ +A
Sbjct: 181 FGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIET---DESGLMRKCGLGTDAFI 237
Query: 335 PV 336
P+
Sbjct: 238 PL 239
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 116/242 (47%), Gaps = 53/242 (21%)
Query: 125 SVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDNHGC 184
+ DWR VT VKDQ CGS WAFS++ SVE I+ +L +LSEQELVDC N+GC
Sbjct: 20 AYDWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGC 79
Query: 185 DGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNAPEV 244
+GGL+ A + + G+ + YPY + + P ++C N D+ +
Sbjct: 80 NGGLINNAFEDMIELGGICPDGDYPYVS-----DAP----------NLC--NIDRCTEKY 122
Query: 245 ILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQFYSEG------------------ 286
+ Y VP++ ++ + ++VA+ DF FY EG
Sbjct: 123 GIKNYLSVPDNKLKEALRFLGPISISVAVS---DDFAFYKEGIFDGECGDQLNHAVMLVG 179
Query: 287 YGA-------TQDGTK--YWIVKNSWGTDWEEKGYIRMLRGIDAEEGL---CGITLEASY 334
+G T+ G K Y+I+KNSWG W E+G+I + E GL CG+ +A
Sbjct: 180 FGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIET---DESGLMRKCGLGTDAFI 236
Query: 335 PV 336
P+
Sbjct: 237 PL 238
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 104 bits (259), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 95/215 (44%), Gaps = 45/215 (20%)
Query: 121 DLPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKD 180
++P +D R VT ++ QG CGSCWAFS V + E LSEQELVDC
Sbjct: 10 NVPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDC-AS 68
Query: 181 NHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKN 240
HGC G + + + +I + G+ E+SYPY A++ C P N
Sbjct: 69 QHGCHGDTIPRGIEYI-QQNGVVEERSYPYVAREQRCRRP-------------------N 108
Query: 241 APEVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKD---FQFYS------------- 284
+ + Y + D + +A+ A+A+ G KD FQ Y
Sbjct: 109 SQHYGISNYCQIYPPDVKQIREALTQTHTAIAVIIGIKDLRAFQHYDGRTIIQHDNGYQP 168
Query: 285 -------EGYGATQDGTKYWIVKNSWGTDWEEKGY 312
GYG+TQ G YWIV+NSW T W + GY
Sbjct: 169 NYHAVNIVGYGSTQ-GDDYWIVRNSWDTTWGDSGY 202
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 94/223 (42%), Gaps = 45/223 (20%)
Query: 121 DLPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKD 180
+ P +D R+ VT ++ QG CGSCWAFS V + E + L+EQELVDC
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDC-AS 67
Query: 181 NHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKN 240
HGC G + + + +I + G+ E Y Y A++ SC P N
Sbjct: 68 QHGCHGDTIPRGIEYI-QHNGVVQESYYRYVAREQSCRRP-------------------N 107
Query: 241 APEVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQFYSE--------------- 285
A + Y + + N + +A+A A+A+ G KD +
Sbjct: 108 AQRFGISNYCQIYPPNVNKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQP 167
Query: 286 --------GYGATQDGTKYWIVKNSWGTDWEEKGYIRMLRGID 320
GY Q G YWIV+NSW T+W + GY ID
Sbjct: 168 NYHAVNIVGYSNAQ-GVDYWIVRNSWDTNWGDNGYGYFAANID 209
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 94/223 (42%), Gaps = 45/223 (20%)
Query: 121 DLPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKD 180
+ P +D R+ VT ++ QG CGSCWAFS V + E + L+EQELVDC
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQELVDC-AS 67
Query: 181 NHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKN 240
HGC G + + + +I + G+ E Y Y A++ SC P N
Sbjct: 68 QHGCHGDTIPRGIEYI-QHNGVVQESYYRYVAREQSCRRP-------------------N 107
Query: 241 APEVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQFYSE--------------- 285
A + Y + + N + +A+A A+A+ G KD +
Sbjct: 108 AQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQP 167
Query: 286 --------GYGATQDGTKYWIVKNSWGTDWEEKGYIRMLRGID 320
GY Q G YWIV+NSW T+W + GY ID
Sbjct: 168 NYHAVNIVGYSNAQ-GVDYWIVRNSWDTNWGDNGYGYFAANID 209
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 93/223 (41%), Gaps = 45/223 (20%)
Query: 121 DLPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKD 180
+ P +D R+ VT ++ QG CGS WAFS V + E + L+EQELVDC
Sbjct: 89 NAPAEIDLRQMRTVTPIRMQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQELVDC-AS 147
Query: 181 NHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKN 240
HGC G + + + +I + G+ E Y Y A++ SC P N
Sbjct: 148 QHGCHGDTIPRGIEYI-QHNGVVQESYYRYVAREQSCRRP-------------------N 187
Query: 241 APEVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQFYSE--------------- 285
A + Y + + N + +A+A A+A+ G KD +
Sbjct: 188 AQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQP 247
Query: 286 --------GYGATQDGTKYWIVKNSWGTDWEEKGYIRMLRGID 320
GY Q G YWIV+NSW T+W + GY ID
Sbjct: 248 NYHAVNIVGYSNAQ-GVDYWIVRNSWDTNWGDNGYGYFAANID 289
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 93/223 (41%), Gaps = 45/223 (20%)
Query: 121 DLPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKD 180
+ P +D R+ VT ++ QG CGS WAFS V + E + L+EQELVDC
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQELVDC-AS 67
Query: 181 NHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKN 240
HGC G + + + +I + G+ E Y Y A++ SC P N
Sbjct: 68 QHGCHGDTIPRGIEYI-QHNGVVQESYYRYVAREQSCRRP-------------------N 107
Query: 241 APEVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQFYSE--------------- 285
A + Y + + N + +A+A A+A+ G KD +
Sbjct: 108 AQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQP 167
Query: 286 --------GYGATQDGTKYWIVKNSWGTDWEEKGYIRMLRGID 320
GY Q G YWIV+NSW T+W + GY ID
Sbjct: 168 NYHAVNIVGYSNAQ-GVDYWIVRNSWDTNWGDNGYGYFAANID 209
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 106/246 (43%), Gaps = 49/246 (19%)
Query: 108 PRRQTGFMHGKTQDLPPSVDWRKQ---GAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTG 164
P T + K LP S DWR V+ V++Q CGSC++F+++ +E +I T
Sbjct: 193 PAPLTAEIQQKILFLPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTN 252
Query: 165 ELWS--LSEQELVDCDKDNHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTS 222
+ LS QE+V C + GC+GG A+ GL E +PYT D C+
Sbjct: 253 NSQTPILSPQEVVSCSQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCK---- 308
Query: 223 MVSIIYRVHICSWNGDKNAPEVILDGYEMVPESDENALMK--AVANQPVAVAIDAGGKDF 280
M +R + ++ + G+ ALMK V + P+AVA + DF
Sbjct: 309 MKEDCFRYYSSEYH--------YVGGFY---GGCNEALMKLELVHHGPMAVAFEV-YDDF 356
Query: 281 QFYSE-------------------------GYGA-TQDGTKYWIVKNSWGTDWEEKGYIR 314
Y + GYG + G YWIVKNSWGT W E GY R
Sbjct: 357 LHYKKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFR 416
Query: 315 MLRGID 320
+ RG D
Sbjct: 417 IRRGTD 422
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 99/243 (40%), Gaps = 43/243 (17%)
Query: 108 PRRQTGFMHGKTQDLPPSVDWRKQ---GAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTG 164
P T + + LP S DWR V+ V++Q CGSC++F+++ +E +I T
Sbjct: 192 PAPITDEIQQQILSLPESWDWRNVRGINFVSPVRNQESCGSCYSFASLGMLEARIRILTN 251
Query: 165 ELWS--LSEQELVDCDKDNHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTS 222
+ LS QE+V C GCDGG A+ G+ E +PYTA D C+ +
Sbjct: 252 NSQTPILSPQEVVSCSPYAQGCDGGFPYLIAGKYAQDFGVVEENCFPYTATDAPCKPKEN 311
Query: 223 MVSIIYRVHICSWNGDKNAPEVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQF 282
+ + E ++ ++ V + P+AVA + +
Sbjct: 312 CLRYYSSEYYYVGGFYGGCNEALMK-------------LELVKHGPMAVAFEVHDDFLHY 358
Query: 283 YS------------------------EGYGA-TQDGTKYWIVKNSWGTDWEEKGYIRMLR 317
+S GYG G YWIVKNSWG+ W E GY R+ R
Sbjct: 359 HSGIYHHTGLSDPFNPFELTNHAVLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRR 418
Query: 318 GID 320
G D
Sbjct: 419 GTD 421
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 107/270 (39%), Gaps = 47/270 (17%)
Query: 104 MLHGPRRQTGFMHGKTQDLPPSVDWRKQ----GAVTGVKDQGRCGSCWAFSTVVSVEGIN 159
L GP+ M + LP S D R+Q + ++DQG CGSCWAF V ++
Sbjct: 46 FLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRI 105
Query: 160 KIKTGELWSL--SEQELVDCDKD--NHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDG 215
I T S+ S ++L+ C GC+GG +A NF + +GL + Y
Sbjct: 106 CIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTR-KGLVSGGLYESHVGCR 164
Query: 216 SCELPTSMVSIIYRVHICSWNGD-KNAPEVILDGYE--------------MVPESDENAL 260
+P + C+ GD ++ GY V S+++ +
Sbjct: 165 PYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIM 224
Query: 261 MKAVANQPVAVAIDAGGKDFQFYSEGY------------------GATQDGTKYWIVKNS 302
+ N PV A DF Y G ++GT YW+V NS
Sbjct: 225 AEIYKNGPVEGAFSVY-SDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANS 283
Query: 303 WGTDWEEKGYIRMLRGIDAEEGLCGITLEA 332
W TDW + G+ ++LRG D CGI E
Sbjct: 284 WNTDWGDNGFFKILRGQDH----CGIESEV 309
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 101/252 (40%), Gaps = 47/252 (18%)
Query: 122 LPPSVDWRKQ----GAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSL--SEQELV 175
LP S D R+Q + ++DQG CGSCWAF V ++ I T S+ S ++L+
Sbjct: 3 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 62
Query: 176 DCDKD--NHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHIC 233
C GC+GG +A NF + +GL + Y +P + C
Sbjct: 63 TCCGSMCGDGCNGGYPAEAWNFWTR-KGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 121
Query: 234 SWNGD-KNAPEVILDGYE--------------MVPESDENALMKAVANQPVAVAIDAGGK 278
+ GD ++ GY V S+++ + + N PV A
Sbjct: 122 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY-S 180
Query: 279 DFQFYSEGY------------------GATQDGTKYWIVKNSWGTDWEEKGYIRMLRGID 320
DF Y G ++GT YW+V NSW TDW + G+ ++LRG D
Sbjct: 181 DFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQD 240
Query: 321 AEEGLCGITLEA 332
CGI E
Sbjct: 241 H----CGIESEV 248
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 101/252 (40%), Gaps = 47/252 (18%)
Query: 122 LPPSVDWRKQ----GAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSL--SEQELV 175
LP S D R+Q + ++DQG CGSCWAF V ++ I T S+ S ++L+
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 60
Query: 176 DCDKD--NHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHIC 233
C GC+GG +A NF + +GL + Y +P + C
Sbjct: 61 TCCGSMCGDGCNGGYPAEAWNFWTR-KGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 119
Query: 234 SWNGD-KNAPEVILDGYE--------------MVPESDENALMKAVANQPVAVAIDAGGK 278
+ GD ++ GY V S+++ + + N PV A
Sbjct: 120 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY-S 178
Query: 279 DFQFYSEGY------------------GATQDGTKYWIVKNSWGTDWEEKGYIRMLRGID 320
DF Y G ++GT YW+V NSW TDW + G+ ++LRG D
Sbjct: 179 DFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQD 238
Query: 321 AEEGLCGITLEA 332
CGI E
Sbjct: 239 H----CGIESEV 246
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 101/252 (40%), Gaps = 47/252 (18%)
Query: 122 LPPSVDWRKQ----GAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSL--SEQELV 175
LP S D R+Q + ++DQG CGSCWAF V ++ I T S+ S ++L+
Sbjct: 2 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 61
Query: 176 DCDKD--NHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHIC 233
C GC+GG +A NF + +GL + Y +P + C
Sbjct: 62 TCCGSMCGDGCNGGYPAEAWNFWTR-KGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 120
Query: 234 SWNGD-KNAPEVILDGYE--------------MVPESDENALMKAVANQPVAVAIDAGGK 278
+ GD ++ GY V S+++ + + N PV A
Sbjct: 121 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY-S 179
Query: 279 DFQFYSEGY------------------GATQDGTKYWIVKNSWGTDWEEKGYIRMLRGID 320
DF Y G ++GT YW+V NSW TDW + G+ ++LRG D
Sbjct: 180 DFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQD 239
Query: 321 AEEGLCGITLEA 332
CGI E
Sbjct: 240 H----CGIESEV 247
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 100/252 (39%), Gaps = 47/252 (18%)
Query: 122 LPPSVDWRKQ----GAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSL--SEQELV 175
LP S D R+Q + ++DQG CGS WAF V ++ I T S+ S ++L+
Sbjct: 7 LPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 66
Query: 176 DCDKD--NHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHIC 233
C GC+GG +A NF + +GL + Y +P + C
Sbjct: 67 TCCGSMCGDGCNGGYPAEAWNFWTR-KGLVSGGLYESHVGCRPYSIPPCEAHVNGARPPC 125
Query: 234 SWNGD-KNAPEVILDGYE--------------MVPESDENALMKAVANQPVAVAIDAGGK 278
+ GD ++ GY V S+++ + + N PV A
Sbjct: 126 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY-S 184
Query: 279 DFQFYSEGY------------------GATQDGTKYWIVKNSWGTDWEEKGYIRMLRGID 320
DF Y G ++GT YW+V NSW TDW + G+ ++LRG D
Sbjct: 185 DFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQD 244
Query: 321 AEEGLCGITLEA 332
CGI E
Sbjct: 245 H----CGIESEV 252
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 99/244 (40%), Gaps = 49/244 (20%)
Query: 121 DLPPSVD----WRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTG--ELWSLSEQEL 174
++P S D W + ++ ++DQ RCGSCWAF V ++ + I++G + LS +L
Sbjct: 2 EIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDL 61
Query: 175 VDC-DKDNHGCDGGLMEQALNFIAKSEGLTTEKS---------YPYTAKDGSCELPTS-- 222
+ C + GC+GG++ A ++ K EG+ T S YP+ CE T
Sbjct: 62 LSCCESCGLGCEGGILGPAWDYWVK-EGIVTGSSKENHAGCEPYPFP----KCEHHTKGK 116
Query: 223 ---MVSIIYRVHICSWNGDKNAPEVILDGYEMVPES-----DENALMKAVANQPVAVAID 274
S IY+ C K S DE A+ K + A
Sbjct: 117 YPPCGSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGF 176
Query: 275 AGGKDFQFYSEGY-----GATQDG-------------TKYWIVKNSWGTDWEEKGYIRML 316
+DF Y G G T G YW++ NSW DW E GY R++
Sbjct: 177 TVYEDFLNYKSGIYKHITGETLGGHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRIV 236
Query: 317 RGID 320
RG D
Sbjct: 237 RGRD 240
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 122 LPPSVDWRKQGA---VTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWS--LSEQELVD 176
LP S DWR V+ V++Q CGSC++F+++ +E +I T + LS QE+V
Sbjct: 1 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 60
Query: 177 CDKDNHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCEL 219
C + GC+GG A+ GL E +PYT D C++
Sbjct: 61 CSQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKM 103
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 104/259 (40%), Gaps = 61/259 (23%)
Query: 121 DLPPSVDWRKQGA----VTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWS--LSEQEL 174
+LP S D R+Q + + ++DQG CGSCWAF V ++ I T + +S ++L
Sbjct: 6 NLPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDL 65
Query: 175 VDCD--KDNHGCDGGLMEQALNFIAKSEGLTTEKSY-------PYTAKDGSCELPTSMVS 225
+ C + GC+GG A NF + +GL + Y PYT +P
Sbjct: 66 LTCCGIQCGDGCNGGYPSGAWNFWTR-KGLVSGGVYNSHIGCLPYT-------IPPCEHH 117
Query: 226 IIYRVHICSWNGDKNAPEVILD-GYEM--------------VPESDENALMKAVANQPVA 270
+ C+ GD + + GY V +S++ + + N PV
Sbjct: 118 VNGARPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVE 177
Query: 271 VAIDAGGKDFQFYSEGY------------------GATQDGTKYWIVKNSWGTDWEEKGY 312
A DF Y G ++G YW+V NSW DW + G+
Sbjct: 178 GAFTV-FSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGF 236
Query: 313 IRMLRGIDAEEGLCGITLE 331
++LRG E CGI E
Sbjct: 237 FKILRG----ENHCGIESE 251
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 103/258 (39%), Gaps = 61/258 (23%)
Query: 122 LPPSVDWRKQGA----VTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWS--LSEQELV 175
LP S D R+Q + + ++DQG CGSCWAF V ++ I T + +S ++L+
Sbjct: 1 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 60
Query: 176 DCD--KDNHGCDGGLMEQALNFIAKSEGLTTEKSY-------PYTAKDGSCELPTSMVSI 226
C + GC+GG A NF + +GL + Y PYT +P +
Sbjct: 61 TCCGIQCGDGCNGGYPSGAWNFWTR-KGLVSGGVYNSHIGCLPYT-------IPPCEHHV 112
Query: 227 IYRVHICSWNGDKNAPEVILD-GYEM--------------VPESDENALMKAVANQPVAV 271
C+ GD + + GY V +S++ + + N PV
Sbjct: 113 NGARPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEG 172
Query: 272 AIDAGGKDFQFYSEGY------------------GATQDGTKYWIVKNSWGTDWEEKGYI 313
A DF Y G ++G YW+V NSW DW + G+
Sbjct: 173 AFTV-FSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFF 231
Query: 314 RMLRGIDAEEGLCGITLE 331
++LRG E CGI E
Sbjct: 232 KILRG----ENHCGIESE 245
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 97/223 (43%), Gaps = 34/223 (15%)
Query: 121 DLPPSVDWRKQGAV---TGVKDQ---GRCGSCWAFSTVVSVEGINKIKTGELWS---LSE 171
DLP S DWR V + ++Q CGSCWA ++ ++ IK W LS
Sbjct: 35 DLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSV 94
Query: 172 QELVDCDKDNHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVH 231
Q ++DC C+GG ++ A G+ E Y AKD C+ +
Sbjct: 95 QNVIDCGNAG-SCEGGNDLSVWDY-AHQHGIPDETCNNYQAKDQECD-KFNQCGTCNEFK 151
Query: 232 ICSWNGDKNAPEVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQF----YSE-- 285
C + +N + Y + E + + AN P++ I A + + Y+E
Sbjct: 152 EC--HAIRNYTLWRVGDYGSL-SGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQ 208
Query: 286 ------------GYGATQDGTKYWIVKNSWGTDWEEKGYIRML 316
G+G + DGT+YWIV+NSWG W E+G++R++
Sbjct: 209 DTTYINHVVSVAGWGIS-DGTEYWIVRNSWGEPWGERGWLRIV 250
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 109/276 (39%), Gaps = 61/276 (22%)
Query: 104 MLHGPRRQTGFMHGKTQDLPPSVDWRKQGA----VTGVKDQGRCGSCWAFSTVVSVEGIN 159
+L GP+ + +LP S D R+Q + + ++DQG CGS WAF V ++
Sbjct: 45 VLGGPKLPERVGFSEDINLPESFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRI 104
Query: 160 KIKTGELWSL--SEQELVDC--DKDNHGCDGGLMEQALNFIAKSEGLTTEKSY------- 208
I T ++ S ++L+ C + GC+GG A NF + +GL + Y
Sbjct: 105 CIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTR-KGLVSGGVYNSHIGCL 163
Query: 209 PYTAKDGSCELPTSMVSIIYRVHICSWNGDKNAPEVILD-GYEM--------------VP 253
PYT +P + C+ GD + + GY V
Sbjct: 164 PYT-------IPPCEHHVNGARPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVS 216
Query: 254 ESDENALMKAVANQPVAVAIDAGGKDFQFYSEGY------------------GATQDGTK 295
+S++ + + N PV A DF Y G ++G
Sbjct: 217 DSEKEIMAEIYKNGPVEGAFTVF-SDFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVP 275
Query: 296 YWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLE 331
YW+V NSW DW + G+ ++LRG E CGI E
Sbjct: 276 YWLVANSWNADWGDNGFFKILRG----ENHCGIESE 307
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 96/222 (43%), Gaps = 34/222 (15%)
Query: 122 LPPSVDWRKQGAV---TGVKDQ---GRCGSCWAFSTVVSVEGINKIKTGELWS---LSEQ 172
LP S DWR V + ++Q CGSCWA ++ ++ IK W LS Q
Sbjct: 1 LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQ 60
Query: 173 ELVDCDKDNHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHI 232
++DC C+GG ++ A G+ E Y AKD C+ +
Sbjct: 61 NVIDCGNAG-SCEGGNDLSVWDY-AHQHGIPDETCNNYQAKDQECD-KFNQCGTCNEFKE 117
Query: 233 CSWNGDKNAPEVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQF----YSE--- 285
C + +N + Y + E + + AN P++ I A + + Y+E
Sbjct: 118 C--HAIRNYTLWRVGDYGSL-SGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQD 174
Query: 286 -----------GYGATQDGTKYWIVKNSWGTDWEEKGYIRML 316
G+G + DGT+YWIV+NSWG W E+G++R++
Sbjct: 175 TTYINHVVSVAGWGIS-DGTEYWIVRNSWGEPWGERGWLRIV 215
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 101/265 (38%), Gaps = 61/265 (23%)
Query: 122 LPPSVD----WRKQGAVTGVKDQGRCGSCWA----------FSTVVSVEGINKIKTGELW 167
LP S D W + + DQ CGSCWA F T+ V+ ++ I G+L
Sbjct: 94 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVH-ISAGDL- 151
Query: 168 SLSEQELVDCDKDNHGCDGGLMEQALNFIAKSEGLTTEKSYPYT-------AKDGSCELP 220
L C GC+GG ++A + + S GL ++ PY +K + P
Sbjct: 152 ------LACCSDCGDGCNGGDPDRAWAYFS-STGLVSDYCQPYPFPHCSHHSKSKNGYPP 204
Query: 221 TSMVSIIYRVHICSWNGDKNAPEVILDGY----EMVPESDENALMKAVANQPVAVAIDAG 276
S + + C++ D P + + Y + +++ + + P VA D
Sbjct: 205 CSQFN--FDTPKCNYTCDD--PTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDV- 259
Query: 277 GKDFQFYSEGY------------------GATQDGTKYWIVKNSWGTDWEEKGYIRMLRG 318
+DF Y+ G T +G YW + NSW T+W GY + RG
Sbjct: 260 YEDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRG 319
Query: 319 IDAEEGLCGITLEASYPVKLHPENS 343
CGI S + L P +
Sbjct: 320 ----SSECGIEDGGSAGIPLAPNTA 340
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 101/265 (38%), Gaps = 61/265 (23%)
Query: 122 LPPSVD----WRKQGAVTGVKDQGRCGSCWA----------FSTVVSVEGINKIKTGELW 167
LP S D W + + DQ CGSCWA F T+ V+ ++ I G+L
Sbjct: 71 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVH-ISAGDL- 128
Query: 168 SLSEQELVDCDKDNHGCDGGLMEQALNFIAKSEGLTTEKSYPYT-------AKDGSCELP 220
L C GC+GG ++A + + S GL ++ PY +K + P
Sbjct: 129 ------LACCSDCGDGCNGGDPDRAWAYFS-STGLVSDYCQPYPFPHCSHHSKSKNGYPP 181
Query: 221 TSMVSIIYRVHICSWNGDKNAPEVILDGY----EMVPESDENALMKAVANQPVAVAIDAG 276
S + + C++ D P + + Y + +++ + + P VA D
Sbjct: 182 CSQFN--FDTPKCNYTCDD--PTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDV- 236
Query: 277 GKDFQFYSEGY------------------GATQDGTKYWIVKNSWGTDWEEKGYIRMLRG 318
+DF Y+ G T +G YW + NSW T+W GY + RG
Sbjct: 237 YEDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRG 296
Query: 319 IDAEEGLCGITLEASYPVKLHPENS 343
CGI S + L P +
Sbjct: 297 ----SSECGIEDGGSAGIPLAPNTA 317
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 100/265 (37%), Gaps = 61/265 (23%)
Query: 122 LPPSVD----WRKQGAVTGVKDQGRCGSCWA----------FSTVVSVEGINKIKTGELW 167
LP S D W + + DQ CGSCWA F T+ V+ ++ I G+L
Sbjct: 72 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVH-ISAGDL- 129
Query: 168 SLSEQELVDCDKDNHGCDGGLMEQALNFIAKSEGLTTEKSYPYT-------AKDGSCELP 220
L C GC+GG ++A + + S GL ++ PY +K + P
Sbjct: 130 ------LACCSDCGDGCNGGDPDRAWAYFS-STGLVSDYCQPYPFPHCSHHSKSKNGYPP 182
Query: 221 TSMVSIIYRVHICSWNGDKNAPEVILDGY----EMVPESDENALMKAVANQPVAVAIDAG 276
S + + C + D P + + Y + +++ + + P VA D
Sbjct: 183 CSQFN--FDTPKCDYTCDD--PTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVY 238
Query: 277 GKDFQFYSEGY------------------GATQDGTKYWIVKNSWGTDWEEKGYIRMLRG 318
+DF Y+ G T +G YW + NSW T+W GY + RG
Sbjct: 239 -EDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRG 297
Query: 319 IDAEEGLCGITLEASYPVKLHPENS 343
CGI S + L P +
Sbjct: 298 ----SSECGIEDGGSAGIPLAPNTA 318
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 51.2 bits (121), Expect = 8e-07, Method: Composition-based stats.
Identities = 22/36 (61%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 286 GYGA-TQDGTKYWIVKNSWGTDWEEKGYIRMLRGID 320
GYG + G YWIVKNSWGT W E GY R+ RG D
Sbjct: 17 GYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTD 52
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 75/199 (37%), Gaps = 41/199 (20%)
Query: 169 LSEQELVDCDKD--NHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSI 226
+S ++L+ C GC+GG +A NF + +GL + Y +P +
Sbjct: 5 VSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTR-KGLVSGGLYESHVGCRPYSIPPCEHHV 63
Query: 227 IYRVHICSWNGD-KNAPEVILDGYE--------------MVPESDENALMKAVANQPVAV 271
C+ GD ++ GY V S+++ + + N PV
Sbjct: 64 NGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEG 123
Query: 272 AIDAGGKDFQFYSEGY------------------GATQDGTKYWIVKNSWGTDWEEKGYI 313
A DF Y G ++GT YW+V NSW TDW + G+
Sbjct: 124 AFSVY-SDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFF 182
Query: 314 RMLRGIDAEEGLCGITLEA 332
++LRG D CGI E
Sbjct: 183 KILRGQDH----CGIESEV 197
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 289 ATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLE 331
++GT YW+V NSW TDW + G+ ++LRG D CGI E
Sbjct: 207 GVENGTPYWLVANSWNTDWGDNGFFKILRGQDH----CGIESE 245
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 122 LPPSVDWRKQ----GAVTGVKDQGRCGSCWAFSTVVSV 155
LP S D R+Q + ++DQG CGSCWAF V ++
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 289 ATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLE 331
++GT YW+V NSW TDW + G+ ++LRG D CGI E
Sbjct: 159 GVENGTPYWLVGNSWNTDWGDNGFFKILRGQDH----CGIESE 197
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 289 ATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLE 331
++GT YW+V NSW TDW + G+ ++LRG D CGI E
Sbjct: 207 GVENGTPYWLVGNSWNTDWGDNGFFKILRGQDH----CGIESE 245
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 294 TKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPV 336
KYW+VKNSWG +W GY++M + CGI ASYP
Sbjct: 2 NKYWLVKNSWGEEWGMGGYVKMAK---DRRNHCGIASAASYPT 41
>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In
Complex With Its Propeptide
Length = 106
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 51 EKQIRFNVFKQNLKRIHKVNQMDKPYKLRLNRFADMTNHEF 91
EKQ R+ +FK NL IH NQ Y L++N F D++ EF
Sbjct: 41 EKQRRYAIFKNNLVYIHTHNQQGYSYSLKMNHFGDLSRDEF 81
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 80/220 (36%), Gaps = 46/220 (20%)
Query: 137 VKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDNHG--CD-GGLMEQAL 193
V+DQG C + W F++ +E I +K E +S + +C K H CD G + L
Sbjct: 25 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFL 84
Query: 194 NFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNG-----DKNAP------ 242
I L E +YPY + P + + W+ +KN P
Sbjct: 85 QIIEDYGFLPAESNYPYNYVKVGEQCPK-----VEDHWMNLWDNGKILHNKNEPNSLDGK 139
Query: 243 -----------------------EVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKD 279
EV+ G + EN + + + V D
Sbjct: 140 GYTAYESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVKNLCGDDTAD 199
Query: 280 FQFYSEGYG--ATQDGTK--YWIVKNSWGTDWEEKGYIRM 315
GYG +G K YWIV+NSWG W ++GY ++
Sbjct: 200 HAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 239
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 80/220 (36%), Gaps = 46/220 (20%)
Query: 137 VKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDNHG--CD-GGLMEQAL 193
V+DQG C + W F++ +E I +K E +S + +C K H CD G + L
Sbjct: 24 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFL 83
Query: 194 NFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNG-----DKNAP------ 242
I L E +YPY + P + + W+ +KN P
Sbjct: 84 QIIEDYGFLPAESNYPYNYVKVGEQCPK-----VEDHWMNLWDNGKILHNKNEPNSLDGK 138
Query: 243 -----------------------EVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKD 279
EV+ G + EN + + + V D
Sbjct: 139 GYTAYESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVQNLCGDDTAD 198
Query: 280 FQFYSEGYG--ATQDGTK--YWIVKNSWGTDWEEKGYIRM 315
GYG +G K YWIV+NSWG W ++GY ++
Sbjct: 199 HAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 238
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 38.1 bits (87), Expect = 0.007, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 122 LPPSVDWRKQ----GAVTGVKDQGRCGSCWAFSTVVSV 155
LP S D R+Q + ++DQG CGSCWAF V ++
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 37.7 bits (86), Expect = 0.010, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 122 LPPSVDWRKQ----GAVTGVKDQGRCGSCWAFSTVVSV 155
LP S D R+Q + ++DQG CGSCWAF V ++
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|3PW3|A Chain A, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|B Chain B, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|C Chain C, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|D Chain D, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|E Chain E, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|F Chain F, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
Length = 383
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 130 KQGAVTGVKDQGRCGSCWAFSTVVSVE 156
K+ +T VK+Q R G+CW +S+ +E
Sbjct: 18 KENPITSVKNQNRAGTCWCYSSYSFLE 44
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 286 GYGATQDGTKYWIVKNSWGTDWEEKG 311
G Q+G +Y+ VKNSWGT+ + G
Sbjct: 324 GIAKDQEGNEYYXVKNSWGTNSKYNG 349
>pdb|3RI0|A Chain A, Epitope Backbone Grafting By Computational Design For
Improved Presentation Of Linear Epitopes On Scaffold
Proteins
pdb|3RI0|B Chain B, Epitope Backbone Grafting By Computational Design For
Improved Presentation Of Linear Epitopes On Scaffold
Proteins
Length = 165
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 103 RMLHGPRRQTGFMHGKTQDLPPSVDWRKQ-----GAVTG--VKDQGRCGSCWAFSTVVSV 155
R + G GF H K +LP S K+ GA G VK GS A+ +VS
Sbjct: 7 RRVQGALETRGFGHLKVVELPASTRTAKEAAQAVGAEVGQIVKSLAYGGSKGAYLFLVS- 65
Query: 156 EGINKIKTGELWSLSEQELVDCDK 179
G N++ G+ L +L++ DK
Sbjct: 66 -GKNRLDLGKAARLVGTDLLELDK 88
>pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mn-Amppnp And N-Acetyl Glactosamine
pdb|2A2C|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mg-Adp And N-Acetyl Galactosamine 1-
Phosphate
Length = 478
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 12/84 (14%)
Query: 146 CWAFSTVVSVEG--INKIKTGELWSLSEQELVDCDKDNHGCDGGLMEQALNFIAKSEGLT 203
C A ++V G ++K++ E+ + SE+ + G +GG M+Q+++F+A+
Sbjct: 172 CCAGLVTLTVLGRNLSKVELAEICAKSERYI--------GTEGGGMDQSISFLAEEGTAK 223
Query: 204 TEKSYPYTAKDGSCELPTSMVSII 227
+ P A D +LP+ V +I
Sbjct: 224 LIEFSPLRATD--VKLPSGAVFVI 245
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,068,553
Number of Sequences: 62578
Number of extensions: 467032
Number of successful extensions: 1303
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 923
Number of HSP's gapped (non-prelim): 141
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)