Query 048002
Match_columns 351
No_of_seqs 276 out of 1793
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 05:19:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048002.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048002hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542 Cysteine proteinase Ca 100.0 5.9E-78 1.3E-82 548.2 21.8 280 30-337 65-371 (372)
2 PTZ00203 cathepsin L protease; 100.0 5.1E-74 1.1E-78 545.7 32.5 309 5-346 10-346 (348)
3 PTZ00021 falcipain-2; Provisio 100.0 4E-71 8.7E-76 540.5 28.8 288 29-338 162-489 (489)
4 PTZ00200 cysteine proteinase; 100.0 8.4E-70 1.8E-74 529.6 30.2 291 24-339 114-447 (448)
5 KOG1543 Cysteine proteinase Ca 100.0 2E-63 4.4E-68 469.8 26.6 266 40-336 30-323 (325)
6 cd02621 Peptidase_C1A_Cathepsi 100.0 2.2E-51 4.7E-56 375.8 19.4 190 122-334 1-239 (243)
7 cd02698 Peptidase_C1A_Cathepsi 100.0 4.9E-51 1.1E-55 372.2 19.3 207 122-336 1-237 (239)
8 cd02248 Peptidase_C1A Peptidas 100.0 1.4E-50 3.1E-55 362.2 19.5 188 123-335 1-210 (210)
9 cd02620 Peptidase_C1A_Cathepsi 100.0 1.8E-50 3.8E-55 367.9 18.1 203 123-333 1-234 (236)
10 PTZ00364 dipeptidyl-peptidase 100.0 1.1E-48 2.4E-53 386.8 20.7 197 120-335 203-459 (548)
11 PF00112 Peptidase_C1: Papain 100.0 7.4E-49 1.6E-53 352.3 14.0 194 122-336 1-219 (219)
12 PTZ00049 cathepsin C-like prot 100.0 1E-47 2.2E-52 383.6 21.1 212 119-336 378-675 (693)
13 smart00645 Pept_C1 Papain fami 100.0 2.2E-43 4.8E-48 306.7 14.7 168 122-331 1-169 (174)
14 cd02619 Peptidase_C1 C1 Peptid 100.0 5.5E-41 1.2E-45 301.9 18.0 177 125-319 1-213 (223)
15 KOG1544 Predicted cysteine pro 100.0 3.1E-42 6.7E-47 310.3 6.7 263 64-333 151-456 (470)
16 PTZ00462 Serine-repeat antigen 100.0 2.5E-40 5.5E-45 339.1 20.5 206 134-345 544-789 (1004)
17 COG4870 Cysteine protease [Pos 99.9 5.6E-25 1.2E-29 203.6 5.7 184 120-321 97-316 (372)
18 cd00585 Peptidase_C1B Peptidas 99.8 6.4E-20 1.4E-24 178.5 9.7 76 135-211 55-159 (437)
19 PF08246 Inhibitor_I29: Cathep 99.7 2.5E-16 5.4E-21 111.6 7.0 56 36-91 1-58 (58)
20 PF03051 Peptidase_C1_2: Pepti 99.6 4.6E-15 9.9E-20 144.8 8.2 76 135-211 56-160 (438)
21 smart00848 Inhibitor_I29 Cathe 99.5 3.7E-14 8.1E-19 99.9 5.5 55 36-90 1-57 (57)
22 COG3579 PepC Aminopeptidase C 98.8 3E-08 6.5E-13 91.5 10.7 75 136-211 59-162 (444)
23 PF08127 Propeptide_C1: Peptid 96.7 0.0013 2.8E-08 42.6 2.2 35 63-99 3-37 (41)
24 KOG4128 Bleomycin hydrolases a 96.6 0.0012 2.5E-08 61.5 2.4 75 135-210 63-168 (457)
25 PF13529 Peptidase_C39_2: Pept 75.0 24 0.00051 28.1 8.5 21 255-275 87-108 (144)
26 PF07172 GRP: Glycine rich pro 54.0 8.1 0.00017 29.9 1.5 19 1-19 5-23 (95)
27 KOG4128 Bleomycin hydrolases a 47.0 4.3 9.4E-05 38.4 -1.1 24 293-316 389-412 (457)
28 KOG4654 Uncharacterized conser 28.7 2E+02 0.0043 25.2 6.1 75 19-94 112-201 (252)
29 TIGR02744 TrbI_Ftype type-F co 28.1 1.8E+02 0.0039 23.2 5.4 46 28-73 35-82 (112)
30 COG4871 Uncharacterized protei 24.2 49 0.0011 28.1 1.6 17 136-152 135-153 (193)
31 PF05543 Peptidase_C47: Stapho 23.9 4.8E+02 0.01 22.6 8.4 119 139-317 18-153 (175)
No 1
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-78 Score=548.20 Aligned_cols=280 Identities=39% Similarity=0.700 Sum_probs=246.0
Q ss_pred HHHHHHHHHHHHhc-cccCChHHHHHHHHHHHHHHHHHHHHccCC-CCeEEEcccCCCCChhhhhhhcCCcccc-CccCC
Q 048002 30 ECLWDLYERWRSHH-TVSRDLKEKQIRFNVFKQNLKRIHKVNQMD-KPYKLRLNRFADMTNHEFMSSRSSKVSH-HRMLH 106 (351)
Q Consensus 30 ~~~~~~f~~~~~~~-k~Y~~~~E~~~R~~~f~~n~~~I~~~N~~~-~s~~~g~N~FsD~t~eEf~~~~~~~~~~-~~~~~ 106 (351)
..+.+.|..|+.+| |+|.+.+|..+|+.+|++|+..++++++.+ .|.+.|+|+|||||+|||++++++.+.. .+...
T Consensus 65 l~~~~~F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~d~gsA~yGvtqFSDlT~eEFkk~~l~~~~~~~~~~~ 144 (372)
T KOG1542|consen 65 LGLEDSFKLFTIKFGRSYASREEHAHRLSIFKHNLLRAERLQENDPGSAEYGVTQFSDLTEEEFKKIYLGVKRRGSKLPG 144 (372)
T ss_pred cchHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHhhhcCccccccCccchhhcCHHHHHHHhhccccccccCcc
Confidence 34478999999999 999999999999999999999999998886 4999999999999999999999876541 11111
Q ss_pred CCCCccccccCCCCCCCCceeccCCCCCCccCCCCCCchHHHHHHHHHhhhhHHHhhCCCccCCHHHhhhcCCCCCCCCC
Q 048002 107 GPRRQTGFMHGKTQDLPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKDNHGCDG 186 (351)
Q Consensus 107 ~~~~~~~~~~~~~~~lP~~~Dwr~~g~v~pVknQg~cGsCwAfA~~~~~e~~~~i~~~~~~~lS~q~l~dc~~~~~gC~G 186 (351)
.... ........||++||||++|.||||||||+||||||||+++++|++++|++|++++||||+|+||+..++||+|
T Consensus 145 ~~~~---~~~~~~~~lP~~fDWR~kgaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~~d~gC~G 221 (372)
T KOG1542|consen 145 DAAE---APIEPGESLPESFDWRDKGAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDSCDNGCNG 221 (372)
T ss_pred cccc---CcCCCCCCCCcccchhccCCccccccCCcCcchhhhhhhhhhhhHHHhhcCcccccchhhhhcccCcCCcCCC
Confidence 1111 1113346899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHcCCCCCCCCCccccCCC-CCCCCCccchhhhhhcccccCCCCCCCcEEecceEEcCCChHHHHHHHH-
Q 048002 187 GLMEQALNFIAKSEGLTTEKSYPYTAKDG-SCELPTSMVSIIYRVHICSWNGDKNAPEVILDGYEMVPESDENALMKAV- 264 (351)
Q Consensus 187 G~~~~a~~~~~~~~Gi~~e~~yPY~~~~~-~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~~i~~~l- 264 (351)
|.+..|++|+.+.+|+..|.+|||++..+ .|...+ ....+.|+++..++. ||++|.+.|
T Consensus 222 Gl~~nA~~~~~~~gGL~~E~dYPY~g~~~~~C~~~~------------------~~~~v~I~~f~~l~~-nE~~ia~wLv 282 (372)
T KOG1542|consen 222 GLMDNAFKYIKKAGGLEKEKDYPYTGKKGNQCHFDK------------------SKIVVSIKDFSMLSN-NEDQIAAWLV 282 (372)
T ss_pred CChhHHHHHHHHhCCccccccCCccccCCCccccch------------------hhceEEEeccEecCC-CHHHHHHHHH
Confidence 99999999988878999999999999887 899876 567889999999976 888888887
Q ss_pred hcCCEEEEEecCCCCccCCCC----------------------ccccCCCCccEEEEEcCCCCCccCCceEEEEecCCCC
Q 048002 265 ANQPVAVAIDAGGKDFQFYSE----------------------GYGATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAE 322 (351)
Q Consensus 265 ~~gPV~v~~~~~~~~f~~Y~~----------------------Gyg~~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~ 322 (351)
++|||+|+|++. .+++|++ |||.+.-.++|||||||||++|||+||+||.||.
T Consensus 283 ~~GPi~vgiNa~--~mQ~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG~--- 357 (372)
T KOG1542|consen 283 TFGPLSVGINAK--PMQFYRGGVSCPSKYICSPKLLNHAVLLVGYGSSGYEKPYWIVKNSWGTSWGEKGYYKLCRGS--- 357 (372)
T ss_pred hcCCeEEEEchH--HHHHhcccccCCCcccCCccccCceEEEEeecCCCCCCceEEEECCccccccccceEEEeccc---
Confidence 789999999975 7999988 9999722899999999999999999999999995
Q ss_pred CCCcccccccceeee
Q 048002 323 EGLCGITLEASYPVK 337 (351)
Q Consensus 323 ~~~Cgi~~~~~yp~~ 337 (351)
|.|||+++++-+.+
T Consensus 358 -N~CGi~~mvss~~v 371 (372)
T KOG1542|consen 358 -NACGIADMVSSAAV 371 (372)
T ss_pred -cccccccchhhhhc
Confidence 56999999876654
No 2
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=5.1e-74 Score=545.70 Aligned_cols=309 Identities=34% Similarity=0.633 Sum_probs=248.1
Q ss_pred HHHHHHHHHHhhccccCCccccCCHHHHHHHHHHHHHhc-cccCChHHHHHHHHHHHHHHHHHHHHccCCCCeEEEcccC
Q 048002 5 VGLSLVLVFGVAESFDYQESDLASEECLWDLYERWRSHH-TVSRDLKEKQIRFNVFKQNLKRIHKVNQMDKPYKLRLNRF 83 (351)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~-k~Y~~~~E~~~R~~~f~~n~~~I~~~N~~~~s~~~g~N~F 83 (351)
.+...|++++++++.... +.....+..+|++||++| |.|.+.+|+.+|+.||++|+++|++||+++.+|++|+|+|
T Consensus 10 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~~~lg~N~F 86 (348)
T PTZ00203 10 AVAVVCVVLAAACAPARA---IYVGTPAAALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQARNPHARFGITKF 86 (348)
T ss_pred HHHHHHHHHHHhhccchh---cccccHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCCCeEEecccc
Confidence 445566667776654321 223456777899999999 9999888999999999999999999998888999999999
Q ss_pred CCCChhhhhhhcCCccc-cCccCCCCCCcccccc--CCCCCCCCceeccCCCCCCccCCCCCCchHHHHHHHHHhhhhHH
Q 048002 84 ADMTNHEFMSSRSSKVS-HHRMLHGPRRQTGFMH--GKTQDLPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINK 160 (351)
Q Consensus 84 sD~t~eEf~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~lP~~~Dwr~~g~v~pVknQg~cGsCwAfA~~~~~e~~~~ 160 (351)
+|||.|||++++++... .... ...... .+.. ....++|++||||++|+|+||||||.||||||||+++++|++++
T Consensus 87 aDlT~eEf~~~~l~~~~~~~~~-~~~~~~-~~~~~~~~~~~lP~~~DWR~~g~VtpVkdQg~CGSCWAfa~~~aiEs~~~ 164 (348)
T PTZ00203 87 FDLSEAEFAARYLNGAAYFAAA-KQHAGQ-HYRKARADLSAVPDAVDWREKGAVTPVKNQGACGSCWAFSAVGNIESQWA 164 (348)
T ss_pred ccCCHHHHHHHhcCCCcccccc-cccccc-cccccccccccCCCCCcCCcCCCCCCccccCCCccHHHHhhHHHHHHHHH
Confidence 99999999988764211 1100 000000 0111 12246899999999999999999999999999999999999999
Q ss_pred HhhCCCccCCHHHhhhcCCCCCCCCCCchHHHHHHHHHc--CCCCCCCCCccccCCC---CCCCCCccchhhhhhccccc
Q 048002 161 IKTGELWSLSEQELVDCDKDNHGCDGGLMEQALNFIAKS--EGLTTEKSYPYTAKDG---SCELPTSMVSIIYRVHICSW 235 (351)
Q Consensus 161 i~~~~~~~lS~q~l~dc~~~~~gC~GG~~~~a~~~~~~~--~Gi~~e~~yPY~~~~~---~c~~~~~~~~~~~~~~~~~~ 235 (351)
|++++.+.||+|+|+||+..+.||+||++..|++|+.++ +|+++|++|||.+.++ .|....
T Consensus 165 i~~~~~~~LSeQqLvdC~~~~~GC~GG~~~~a~~yi~~~~~ggi~~e~~YPY~~~~~~~~~C~~~~-------------- 230 (348)
T PTZ00203 165 VAGHKLVRLSEQQLVSCDHVDNGCGGGLMLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSS-------------- 230 (348)
T ss_pred HhcCCCccCCHHHHHhccCCCCCCCCCCHHHHHHHHHHhcCCCCCccccCCCccCCCCCCcCCCCc--------------
Confidence 999999999999999999878899999999999999764 5789999999988765 465322
Q ss_pred CCCCCCCcEEecceEEcCCChHHHHHHHHh-cCCEEEEEecCCCCccCCCC------------------ccccCCCCccE
Q 048002 236 NGDKNAPEVILDGYEMVPESDENALMKAVA-NQPVAVAIDAGGKDFQFYSE------------------GYGATQDGTKY 296 (351)
Q Consensus 236 ~~~~~~~~~~i~~~~~v~~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~Y~~------------------Gyg~~~~g~~y 296 (351)
......++.+|..++. +++.|+.+|. +|||+|+|++. +|++|++ |||.+ +|++|
T Consensus 231 ---~~~~~~~i~~~~~i~~-~e~~~~~~l~~~GPv~v~i~a~--~f~~Y~~GIy~~c~~~~~nHaVliVGYG~~-~g~~Y 303 (348)
T PTZ00203 231 ---ELAPGARIDGYVSMES-SERVMAAWLAKNGPISIAVDAS--SFMSYHSGVLTSCIGEQLNHGVLLVGYNMT-GEVPY 303 (348)
T ss_pred ---ccccceEecceeecCc-CHHHHHHHHHhCCCEEEEEEhh--hhcCccCceeeccCCCCCCeEEEEEEEecC-CCceE
Confidence 1123467889988865 7888999885 69999999985 7999998 99986 78999
Q ss_pred EEEEcCCCCCccCCceEEEEecCCCCCCCcccccccceeeecCCCCCCCC
Q 048002 297 WIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPVKLHPENSRHP 346 (351)
Q Consensus 297 WivkNSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~yp~~~~~~~~~~~ 346 (351)
||||||||++|||+|||||+|+. |.|||++ ||+......+.+|
T Consensus 304 WiikNSWG~~WGe~GY~ri~rg~----n~Cgi~~---~~~~~~~~~~~~~ 346 (348)
T PTZ00203 304 WVIKNSWGEDWGEKGYVRVTMGV----NACLLTG---YPVSVHVSQSPTP 346 (348)
T ss_pred EEEEcCCCCCcCcCceEEEEcCC----Ccccccc---eEEEEecCCCCCC
Confidence 99999999999999999999984 4699995 4554566666665
No 3
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=4e-71 Score=540.51 Aligned_cols=288 Identities=34% Similarity=0.569 Sum_probs=238.0
Q ss_pred HHHHHHHHHHHHHhc-cccCChHHHHHHHHHHHHHHHHHHHHccCC-CCeEEEcccCCCCChhhhhhhcCCcccc--Ccc
Q 048002 29 EECLWDLYERWRSHH-TVSRDLKEKQIRFNVFKQNLKRIHKVNQMD-KPYKLRLNRFADMTNHEFMSSRSSKVSH--HRM 104 (351)
Q Consensus 29 ~~~~~~~f~~~~~~~-k~Y~~~~E~~~R~~~f~~n~~~I~~~N~~~-~s~~~g~N~FsD~t~eEf~~~~~~~~~~--~~~ 104 (351)
..+....|++|+.+| |+|.+.+|+..|+.+|++|+++|++||+++ .+|++|+|+|+|||.|||++++++.... ...
T Consensus 162 n~e~~~~F~~wk~ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~~~~~ty~lgiNqFsDlT~EEF~~~~l~~~~~~~~~~ 241 (489)
T PTZ00021 162 NLENVNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMNRFGDLSFEEFKKKYLTLKSFDFKSN 241 (489)
T ss_pred ChHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEeccccccCCHHHHHHHhccccccccccc
Confidence 345557899999999 999999999999999999999999999864 7999999999999999999888764321 000
Q ss_pred CCCCCCccc-------cccCCCCCCCCceeccCCCCCCccCCCCCCchHHHHHHHHHhhhhHHHhhCCCccCCHHHhhhc
Q 048002 105 LHGPRRQTG-------FMHGKTQDLPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDC 177 (351)
Q Consensus 105 ~~~~~~~~~-------~~~~~~~~lP~~~Dwr~~g~v~pVknQg~cGsCwAfA~~~~~e~~~~i~~~~~~~lS~q~l~dc 177 (351)
......... +........|.+||||++|.|+||||||.||||||||+++++|++++|++++.+.||+|+|+||
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~P~s~DWR~~g~VtpVKdQG~CGSCWAFAa~~alEs~~~I~~g~~v~LSeQqLVDC 321 (489)
T PTZ00021 242 GKKSPRVINYDDVIKKYKPKDATFDHAKYDWRLHNGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSEQELVDC 321 (489)
T ss_pred cccccccccccccccccccccccCCccccccccCCCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCcccCHHHHhhh
Confidence 000000000 0011111249999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCchHHHHHHHHHcCCCCCCCCCccccC-CCCCCCCCccchhhhhhcccccCCCCCCCcEEecceEEcCCCh
Q 048002 178 DKDNHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAK-DGSCELPTSMVSIIYRVHICSWNGDKNAPEVILDGYEMVPESD 256 (351)
Q Consensus 178 ~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~-~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~ 256 (351)
+..+.||+||++..|+.|+.+++||++|++|||.+. .+.|.... ....++|.+|..++
T Consensus 322 s~~n~GC~GG~~~~Af~yi~~~gGl~tE~~YPY~~~~~~~C~~~~------------------~~~~~~i~~y~~i~--- 380 (489)
T PTZ00021 322 SFKNNGCYGGLIPNAFEDMIELGGLCSEDDYPYVSDTPELCNIDR------------------CKEKYKIKSYVSIP--- 380 (489)
T ss_pred ccCCCCCCCcchHhhhhhhhhccccCcccccCccCCCCCcccccc------------------ccccceeeeEEEec---
Confidence 988899999999999999987779999999999986 36786543 23456888998885
Q ss_pred HHHHHHHHh-cCCEEEEEecCCCCccCCCC------------------ccccCC---------CCccEEEEEcCCCCCcc
Q 048002 257 ENALMKAVA-NQPVAVAIDAGGKDFQFYSE------------------GYGATQ---------DGTKYWIVKNSWGTDWE 308 (351)
Q Consensus 257 ~~~i~~~l~-~gPV~v~~~~~~~~f~~Y~~------------------Gyg~~~---------~g~~yWivkNSWG~~WG 308 (351)
+++|+++|. .|||+|+|++. .+|++|++ |||+++ .+.+|||||||||++||
T Consensus 381 ~~~lk~al~~~GPVsv~i~a~-~~f~~YkgGIy~~~C~~~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt~WG 459 (489)
T PTZ00021 381 EDKFKEAIRFLGPISVSIAVS-DDFAFYKGGIFDGECGEEPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWG 459 (489)
T ss_pred HHHHHHHHHhcCCeEEEEEee-cccccCCCCcCCCCCCCccceEEEEEEecCcCCcccccccCCCCCEEEEECCCCCCcc
Confidence 468999995 69999999997 68999987 999752 12579999999999999
Q ss_pred CCceEEEEecCCCCCCCcccccccceeeec
Q 048002 309 EKGYIRMLRGIDAEEGLCGITLEASYPVKL 338 (351)
Q Consensus 309 e~Gy~~i~r~~~~~~~~Cgi~~~~~yp~~~ 338 (351)
|+|||||+|+.+...|+|||++.+.||+++
T Consensus 460 E~GY~rI~r~~~g~~n~CGI~t~a~yP~~~ 489 (489)
T PTZ00021 460 EKGFIRIETDENGLMKTCSLGTEAYVPLIE 489 (489)
T ss_pred cCeEEEEEcCCCCCCCCCCCcccceeEecC
Confidence 999999999975445789999999999863
No 4
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=8.4e-70 Score=529.64 Aligned_cols=291 Identities=34% Similarity=0.623 Sum_probs=239.8
Q ss_pred cccCCHHHHHHHHHHHHHhc-cccCChHHHHHHHHHHHHHHHHHHHHccCCCCeEEEcccCCCCChhhhhhhcCCccccC
Q 048002 24 SDLASEECLWDLYERWRSHH-TVSRDLKEKQIRFNVFKQNLKRIHKVNQMDKPYKLRLNRFADMTNHEFMSSRSSKVSHH 102 (351)
Q Consensus 24 ~~~~~~~~~~~~f~~~~~~~-k~Y~~~~E~~~R~~~f~~n~~~I~~~N~~~~s~~~g~N~FsD~t~eEf~~~~~~~~~~~ 102 (351)
.+...+.++...|++|+++| |.|.+.+|+.+|+.+|++|+++|++||. +.+|++|+|+|+|||.|||.+++++...+.
T Consensus 114 ~~~~~e~e~~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~-~~~y~lgiN~FsDlT~eEF~~~~~~~~~~~ 192 (448)
T PTZ00200 114 DDPKLEFEVYLEFEEFNKKYNRKHATHAERLNRFLTFRNNYLEVKSHKG-DEPYSKEINKFSDLTEEEFRKLFPVIKVPP 192 (448)
T ss_pred CCccchHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhcC-cCCeEEeccccccCCHHHHHHHhccCCCcc
Confidence 34456677888999999999 9999999999999999999999999996 468999999999999999998876533211
Q ss_pred ccC---CC-------CCCcc---cccc-----C---C-CCCCCCceeccCCCCCCccCCCC-CCchHHHHHHHHHhhhhH
Q 048002 103 RML---HG-------PRRQT---GFMH-----G---K-TQDLPPSVDWRKQGAVTGVKDQG-RCGSCWAFSTVVSVEGIN 159 (351)
Q Consensus 103 ~~~---~~-------~~~~~---~~~~-----~---~-~~~lP~~~Dwr~~g~v~pVknQg-~cGsCwAfA~~~~~e~~~ 159 (351)
... .. ..... .... . . ...+|++||||+.|.|+|||||| .||||||||+++++|+++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g~vtpVkdQG~~CGSCWAFat~~aiEs~~ 272 (448)
T PTZ00200 193 KSNSTSHNNDFKARHVSNPTYLKNLKKAKNTDEDVKDPSKITGEGLDWRRADAVTKVKDQGLNCGSCWAFSSVGSVESLY 272 (448)
T ss_pred cccccccccccccccccccccccccccccccccccccccccCCCCccCCCCCCCCCcccCCCccchHHHHhHHHHHHHHH
Confidence 000 00 00000 0000 0 0 12369999999999999999999 999999999999999999
Q ss_pred HHhhCCCccCCHHHhhhcCCCCCCCCCCchHHHHHHHHHcCCCCCCCCCccccCCCCCCCCCccchhhhhhcccccCCCC
Q 048002 160 KIKTGELWSLSEQELVDCDKDNHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDK 239 (351)
Q Consensus 160 ~i~~~~~~~lS~q~l~dc~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~c~~~~~~~~~~~~~~~~~~~~~~ 239 (351)
+|+++..+.||+|+|+||+..+.||+||++..|++|+.++ ||++|++|||.+..+.|....
T Consensus 273 ~i~~~~~~~LSeQqLvDC~~~~~GC~GG~~~~A~~yi~~~-Gi~~e~~YPY~~~~~~C~~~~------------------ 333 (448)
T PTZ00200 273 KIYRDKSVDLSEQELVNCDTKSQGCSGGYPDTALEYVKNK-GLSSSSDVPYLAKDGKCVVSS------------------ 333 (448)
T ss_pred HHhcCCCeecCHHHHhhccCccCCCCCCcHHHHHHHHhhc-CccccccCCCCCCCCCCcCCC------------------
Confidence 9999999999999999999878899999999999999887 999999999999888997543
Q ss_pred CCCcEEecceEEcCCChHHHHHHHHhcCCEEEEEecCCCCccCCCC------------------ccccC-CCCccEEEEE
Q 048002 240 NAPEVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQFYSE------------------GYGAT-QDGTKYWIVK 300 (351)
Q Consensus 240 ~~~~~~i~~~~~v~~~~~~~i~~~l~~gPV~v~~~~~~~~f~~Y~~------------------Gyg~~-~~g~~yWivk 300 (351)
.....|.+|..++ ..+.|++++..|||+|+|+++ .+|+.|++ |||.+ .+|.+|||||
T Consensus 334 -~~~~~i~~y~~~~--~~~~l~~~l~~GPV~v~i~~~-~~f~~Yk~GIy~~~C~~~~nHaV~lVGyG~d~~~g~~YWIIk 409 (448)
T PTZ00200 334 -TKKVYIDSYLVAK--GKDVLNKSLVISPTVVYIAVS-RELLKYKSGVYNGECGKSLNHAVLLVGEGYDEKTKKRYWIIK 409 (448)
T ss_pred -CCeeEecceEecC--HHHHHHHHHhcCCEEEEeecc-cccccCCCCccccccCCCCcEEEEEEEecccCCCCCceEEEE
Confidence 2335688887663 356778788889999999997 79999988 88753 3688999999
Q ss_pred cCCCCCccCCceEEEEecCCCCCCCcccccccceeeecC
Q 048002 301 NSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPVKLH 339 (351)
Q Consensus 301 NSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~yp~~~~ 339 (351)
||||++|||+|||||+|+.. ..|.|||++.+.||++..
T Consensus 410 NSWG~~WGe~GY~ri~r~~~-g~n~CGI~~~~~~P~~~~ 447 (448)
T PTZ00200 410 NSWGTDWGENGYMRLERTNE-GTDKCGILTVGLTPVFYS 447 (448)
T ss_pred cCCCCCcccCeeEEEEeCCC-CCCcCCccccceeeEEec
Confidence 99999999999999999742 246899999999999843
No 5
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-63 Score=469.82 Aligned_cols=266 Identities=45% Similarity=0.808 Sum_probs=230.8
Q ss_pred HHhc-cccCChHHHHHHHHHHHHHHHHHHHHccC-CCCeEEEcccCCCCChhhhhhhcCCccccCccCCCCCCccccccC
Q 048002 40 RSHH-TVSRDLKEKQIRFNVFKQNLKRIHKVNQM-DKPYKLRLNRFADMTNHEFMSSRSSKVSHHRMLHGPRRQTGFMHG 117 (351)
Q Consensus 40 ~~~~-k~Y~~~~E~~~R~~~f~~n~~~I~~~N~~-~~s~~~g~N~FsD~t~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (351)
+.+| +.|.+..|...|+.+|.+|++.|+.||.. ..+|++|+|+|+|++.+|++..+.+.+.+.. .. ... ....
T Consensus 30 ~~~~~~~y~~~~~~~~r~~~f~~n~~~~~~~n~~~~~~~~~g~n~~~d~~~ee~~~~~~~~~~~~~--~~-~~~--~~~~ 104 (325)
T KOG1543|consen 30 LVKFLKRYEDRVEKKARRAIFKENLQKIESHNLKYVLSFLMGVNQFADLTTEEFKRKKTGKKPPEI--KR-DKF--TEKL 104 (325)
T ss_pred hhhhccccccHHHHHHHHHHHHHHHHHHHhhhhhhceeeeeccccccccchHHHHHhhccccCccc--cc-ccc--cccc
Confidence 7778 99987789999999999999999999998 6899999999999999999988876554221 00 000 1112
Q ss_pred CCCCCCCceeccCCC-CCCccCCCCCCchHHHHHHHHHhhhhHHHhhC-CCccCCHHHhhhcCC-CCCCCCCCchHHHHH
Q 048002 118 KTQDLPPSVDWRKQG-AVTGVKDQGRCGSCWAFSTVVSVEGINKIKTG-ELWSLSEQELVDCDK-DNHGCDGGLMEQALN 194 (351)
Q Consensus 118 ~~~~lP~~~Dwr~~g-~v~pVknQg~cGsCwAfA~~~~~e~~~~i~~~-~~~~lS~q~l~dc~~-~~~gC~GG~~~~a~~ 194 (351)
...++|++||||+++ .++||||||.||||||||++++||++++|+++ .++.||+|+|+||+. .++||+||.+..|++
T Consensus 105 ~~~~~p~s~DwR~~~~~~~~vkdQg~CgsCWAFaa~~aie~~~~i~~g~~l~sLSeq~lvdC~~~~~~GC~GG~~~~A~~ 184 (325)
T KOG1543|consen 105 DGDDLPDSFDWRDKGAVTPPVKDQGSCGSCWAFAATGALEDRYNIKTGGKLLSLSEQDLVDCCGECGDGCNGGEPKNAFK 184 (325)
T ss_pred chhhCCCCccccccCCcCCCcCCCCcCcchHHHHHHHHHHHHHHHHhCCccCccChhhhhhccCCCCCCcCCCCHHHHHH
Confidence 245799999999996 55669999999999999999999999999999 899999999999998 588999999999999
Q ss_pred HHHHcCCCCC-CCCCccccCCCCCCCCCccchhhhhhcccccCCCCCCCcEEecceEEcCCChHHHHHHHHh-cCCEEEE
Q 048002 195 FIAKSEGLTT-EKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNAPEVILDGYEMVPESDENALMKAVA-NQPVAVA 272 (351)
Q Consensus 195 ~~~~~~Gi~~-e~~yPY~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~~i~~~l~-~gPV~v~ 272 (351)
|+.++ |+++ +.+|||.+..+.|.... ....+.+.++..++.. +++|+.+|+ +|||+|+
T Consensus 185 yi~~~-G~~t~~~~Ypy~~~~~~C~~~~------------------~~~~~~~~~~~~~~~~-e~~i~~~v~~~GPv~v~ 244 (325)
T KOG1543|consen 185 YIKKN-GGVTECENYPYIGKDGTCKSNK------------------KDKTVTIKGFYNVPAN-EEAIAEAVAKNGPVSVA 244 (325)
T ss_pred HHHHh-CCCCCCcCCCCcCCCCCccCCC------------------ccceeEeeeeeecCcC-HHHHHHHHHhcCCeEEE
Confidence 99998 6666 99999999999998876 2456778888888775 999999995 5899999
Q ss_pred EecCCCCccCCCC--------------------ccccCCCCccEEEEEcCCCCCccCCceEEEEecCCCCCCCccccccc
Q 048002 273 IDAGGKDFQFYSE--------------------GYGATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEA 332 (351)
Q Consensus 273 ~~~~~~~f~~Y~~--------------------Gyg~~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~ 332 (351)
|++. .+|++|++ |||+ .++.+|||||||||++|||+|||||.|+++. |+|+..+
T Consensus 245 ~~a~-~~F~~Y~~GVy~~~~~~~~~~~Hav~iVGyG~-~~~~~YWivkNSWG~~WGe~Gy~ri~r~~~~----~~I~~~~ 318 (325)
T KOG1543|consen 245 IDAY-EDFSLYKGGVYAEEKGDDKEGDHAVLIVGYGT-GDGVDYWIVKNSWGTDWGEKGYFRIARGVNK----CGIASEA 318 (325)
T ss_pred Eeeh-hhhhhccCceEeCCCCCCCCCCceEEEEEEcC-CCCceeEEEEcCCCCCcccCceEEEecCCCc----hhhhccc
Confidence 9999 59999998 9999 5889999999999999999999999999765 9999999
Q ss_pred ce-ee
Q 048002 333 SY-PV 336 (351)
Q Consensus 333 ~y-p~ 336 (351)
.| |+
T Consensus 319 ~~~p~ 323 (325)
T KOG1543|consen 319 SYGPI 323 (325)
T ss_pred ccCCC
Confidence 88 65
No 6
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=2.2e-51 Score=375.75 Aligned_cols=190 Identities=39% Similarity=0.783 Sum_probs=159.4
Q ss_pred CCCceeccCCC----CCCccCCCCCCchHHHHHHHHHhhhhHHHhhCC------CccCCHHHhhhcCCCCCCCCCCchHH
Q 048002 122 LPPSVDWRKQG----AVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGE------LWSLSEQELVDCDKDNHGCDGGLMEQ 191 (351)
Q Consensus 122 lP~~~Dwr~~g----~v~pVknQg~cGsCwAfA~~~~~e~~~~i~~~~------~~~lS~q~l~dc~~~~~gC~GG~~~~ 191 (351)
||++||||+.+ +|+||||||.||||||||++++||++++|++++ .+.||+|+|+||+..+.||+||++..
T Consensus 1 lP~~fDwr~~~~~~~~v~~v~dQg~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~~~~GC~GG~~~~ 80 (243)
T cd02621 1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQYSQGCDGGFPFL 80 (243)
T ss_pred CCCcccccccCCCCcccccCCCCCcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcCCCCCCCCCCHHH
Confidence 79999999998 999999999999999999999999999998876 68999999999998778999999999
Q ss_pred HHHHHHHcCCCCCCCCCcccc-CCCCCCCCCccchhhhhhcccccCCCCCCCcEEecceEEc----CCChHHHHHHHH-h
Q 048002 192 ALNFIAKSEGLTTEKSYPYTA-KDGSCELPTSMVSIIYRVHICSWNGDKNAPEVILDGYEMV----PESDENALMKAV-A 265 (351)
Q Consensus 192 a~~~~~~~~Gi~~e~~yPY~~-~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v----~~~~~~~i~~~l-~ 265 (351)
++.|+.++ |+++|.+|||.. ..+.|..... ....+++..|..+ ...++++|+++| .
T Consensus 81 a~~~~~~~-Gi~~e~~yPY~~~~~~~C~~~~~-----------------~~~~~~~~~~~~i~~~~~~~~~~~ik~~i~~ 142 (243)
T cd02621 81 VGKFAEDF-GIVTEDYFPYTADDDRPCKASPS-----------------ECRRYYFSDYNYVGGCYGCTNEDEMKWEIYR 142 (243)
T ss_pred HHHHHHhc-CcCCCceeCCCCCCCCCCCCCcc-----------------ccccccccceeEcccccccCCHHHHHHHHHH
Confidence 99999887 999999999998 6777875430 1111222333322 124788999998 5
Q ss_pred cCCEEEEEecCCCCccCCCC--------------------------------ccccCC-CCccEEEEEcCCCCCccCCce
Q 048002 266 NQPVAVAIDAGGKDFQFYSE--------------------------------GYGATQ-DGTKYWIVKNSWGTDWEEKGY 312 (351)
Q Consensus 266 ~gPV~v~~~~~~~~f~~Y~~--------------------------------Gyg~~~-~g~~yWivkNSWG~~WGe~Gy 312 (351)
+|||+|+|++. ++|++|++ |||++. +|.+|||||||||++|||+||
T Consensus 143 ~GPv~v~~~~~-~~F~~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiirNSWG~~WGe~Gy 221 (243)
T cd02621 143 NGPIVVAFEVY-SDFDFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGY 221 (243)
T ss_pred cCCEEEEEEec-ccccccCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccCCCCCcEEEEEcCCCCCCCcCCe
Confidence 79999999997 78987742 788763 388999999999999999999
Q ss_pred EEEEecCCCCCCCcccccccce
Q 048002 313 IRMLRGIDAEEGLCGITLEASY 334 (351)
Q Consensus 313 ~~i~r~~~~~~~~Cgi~~~~~y 334 (351)
|||+|+. +.|||++.+.+
T Consensus 222 ~~i~~~~----~~cgi~~~~~~ 239 (243)
T cd02621 222 FKIRRGT----NECGIESQAVF 239 (243)
T ss_pred EEEecCC----cccCcccceEe
Confidence 9999985 46999998865
No 7
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=4.9e-51 Score=372.24 Aligned_cols=207 Identities=29% Similarity=0.567 Sum_probs=169.2
Q ss_pred CCCceeccCCC---CCCccCCCC---CCchHHHHHHHHHhhhhHHHhhC---CCccCCHHHhhhcCCCCCCCCCCchHHH
Q 048002 122 LPPSVDWRKQG---AVTGVKDQG---RCGSCWAFSTVVSVEGINKIKTG---ELWSLSEQELVDCDKDNHGCDGGLMEQA 192 (351)
Q Consensus 122 lP~~~Dwr~~g---~v~pVknQg---~cGsCwAfA~~~~~e~~~~i~~~---~~~~lS~q~l~dc~~~~~gC~GG~~~~a 192 (351)
||++||||+.+ +|+|||||| .||||||||++++||++++|+++ ..+.||+|+|+||+. +.||+||++..+
T Consensus 1 lP~~~Dwr~~~~~~~v~~vk~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~-~~gC~GG~~~~a 79 (239)
T cd02698 1 LPKSWDWRNVNGVNYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG-GGSCHGGDPGGV 79 (239)
T ss_pred CCCCcccccCCCCcccCccccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC-CCCccCcCHHHH
Confidence 69999999987 999999998 89999999999999999999875 357899999999997 789999999999
Q ss_pred HHHHHHcCCCCCCCCCccccCCCCCCCCCccchhhhhhcccccCCCCCCCcEEecceEEcCCChHHHHHHHH-hcCCEEE
Q 048002 193 LNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNAPEVILDGYEMVPESDENALMKAV-ANQPVAV 271 (351)
Q Consensus 193 ~~~~~~~~Gi~~e~~yPY~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~~i~~~l-~~gPV~v 271 (351)
++|+.++ |+++|.+|||....+.|..... ...+.....|... .....+++++|..++ +++.|+++| .+|||+|
T Consensus 80 ~~~~~~~-Gl~~e~~yPY~~~~~~C~~~~~-~~~c~~~~~c~~~--~~~~~~~i~~~~~~~--~~~~i~~~l~~~GPV~v 153 (239)
T cd02698 80 YEYAHKH-GIPDETCNPYQAKDGECNPFNR-CGTCNPFGECFAI--KNYTLYFVSDYGSVS--GRDKMMAEIYARGPISC 153 (239)
T ss_pred HHHHHHc-CcCCCCeeCCcCCCCCCcCCCC-CCCcccCcccccc--cccceEEeeeceecC--CHHHHHHHHHHcCCEEE
Confidence 9999987 9999999999988777864221 0011111122111 123456788888774 467888887 6799999
Q ss_pred EEecCCCCccCCCC-------------------ccccCCCCccEEEEEcCCCCCccCCceEEEEecCC-CCCCCcccccc
Q 048002 272 AIDAGGKDFQFYSE-------------------GYGATQDGTKYWIVKNSWGTDWEEKGYIRMLRGID-AEEGLCGITLE 331 (351)
Q Consensus 272 ~~~~~~~~f~~Y~~-------------------Gyg~~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~-~~~~~Cgi~~~ 331 (351)
+|.+. .+|+.|++ |||++.+|++|||||||||++|||+|||||+|+.. +..++|||++.
T Consensus 154 ~i~~~-~~f~~Y~~GIy~~~~~~~~~~HaV~IVGyG~~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~~~ 232 (239)
T cd02698 154 GIMAT-EALENYTGGVYKEYVQDPLINHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEED 232 (239)
T ss_pred EEEec-ccccccCCeEEccCCCCCcCCeEEEEEEEEecCCCCEEEEEEcCCCcccCcCceEEEEccCCcccccccccccc
Confidence 99998 68999988 99987348999999999999999999999999961 22357999999
Q ss_pred cceee
Q 048002 332 ASYPV 336 (351)
Q Consensus 332 ~~yp~ 336 (351)
+.|+.
T Consensus 233 ~~~~~ 237 (239)
T cd02698 233 CAWAD 237 (239)
T ss_pred eEEEe
Confidence 98874
No 8
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=1.4e-50 Score=362.20 Aligned_cols=188 Identities=58% Similarity=1.076 Sum_probs=170.5
Q ss_pred CCceeccCCCCCCccCCCCCCchHHHHHHHHHhhhhHHHhhCCCccCCHHHhhhcCCC-CCCCCCCchHHHHHHHHHcCC
Q 048002 123 PPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKD-NHGCDGGLMEQALNFIAKSEG 201 (351)
Q Consensus 123 P~~~Dwr~~g~v~pVknQg~cGsCwAfA~~~~~e~~~~i~~~~~~~lS~q~l~dc~~~-~~gC~GG~~~~a~~~~~~~~G 201 (351)
|++||||+.+.++||+|||.||+|||||++++||++++++++..++||+|+|++|... +.+|.||.+..|++++.+. |
T Consensus 1 P~~~d~r~~~~~~~v~dQg~cgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~gC~GG~~~~a~~~~~~~-G 79 (210)
T cd02248 1 PESVDWREKGAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTSGNNGCNGGNPDNAFEYVKNG-G 79 (210)
T ss_pred CCcccCCcCCCCCCCccCCCCcchHHhHHHHHHHHHHHHHcCCCcccCHHHHhccCCCCCCCCCCCCHHHhHHHHHHC-C
Confidence 8899999999999999999999999999999999999999998899999999999974 7899999999999999886 9
Q ss_pred CCCCCCCccccCCCCCCCCCccchhhhhhcccccCCCCCCCcEEecceEEcCCChHHHHHHHH-hcCCEEEEEecCCCCc
Q 048002 202 LTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNAPEVILDGYEMVPESDENALMKAV-ANQPVAVAIDAGGKDF 280 (351)
Q Consensus 202 i~~e~~yPY~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~~i~~~l-~~gPV~v~~~~~~~~f 280 (351)
+++|++|||......|.... .....++.+|..++..++++||++| .+|||+++|.+. ++|
T Consensus 80 i~~e~~yPY~~~~~~C~~~~------------------~~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~~~~-~~f 140 (210)
T cd02248 80 LASESDYPYTGKDGTCKYNS------------------SKVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDAS-SSF 140 (210)
T ss_pred cCccccCCccCCCCCccCCC------------------CcccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEEecC-ccc
Confidence 99999999998777887654 3456889999999876789999999 558999999997 789
Q ss_pred cCCCC--------------------ccccCCCCccEEEEEcCCCCCccCCceEEEEecCCCCCCCccccccccee
Q 048002 281 QFYSE--------------------GYGATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYP 335 (351)
Q Consensus 281 ~~Y~~--------------------Gyg~~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~yp 335 (351)
+.|++ |||++ .+.+|||||||||++||++|||||+|+. +.|||+..+.||
T Consensus 141 ~~y~~Giy~~~~~~~~~~~Hav~iVGy~~~-~~~~ywiv~NSWG~~WG~~Gy~~i~~~~----~~cgi~~~~~~~ 210 (210)
T cd02248 141 QFYKGGIYSGPCCSNTNLNHAVLLVGYGTE-NGVDYWIVKNSWGTSWGEKGYIRIARGS----NLCGIASYASYP 210 (210)
T ss_pred ccCCCCceeCCCCCCCcCCEEEEEEEEeec-CCceEEEEEcCCCCccccCcEEEEEcCC----CccCceeeeecC
Confidence 98876 99987 6899999999999999999999999985 469999988876
No 9
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=1.8e-50 Score=367.92 Aligned_cols=203 Identities=35% Similarity=0.671 Sum_probs=160.6
Q ss_pred CCceeccCC--CC--CCccCCCCCCchHHHHHHHHHhhhhHHHhhC--CCccCCHHHhhhcCCC-CCCCCCCchHHHHHH
Q 048002 123 PPSVDWRKQ--GA--VTGVKDQGRCGSCWAFSTVVSVEGINKIKTG--ELWSLSEQELVDCDKD-NHGCDGGLMEQALNF 195 (351)
Q Consensus 123 P~~~Dwr~~--g~--v~pVknQg~cGsCwAfA~~~~~e~~~~i~~~--~~~~lS~q~l~dc~~~-~~gC~GG~~~~a~~~ 195 (351)
|++||||++ ++ |+||+|||.||||||||++++||++++|+++ +.+.||+|+|+||+.. +.||+||++..|++|
T Consensus 1 p~~~DwR~~~~~~~~v~~v~dQg~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~~~~gC~GG~~~~a~~~ 80 (236)
T cd02620 1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSGCGDGCNGGYPDAAWKY 80 (236)
T ss_pred CCcccchhhCCCCCCccccCCcccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCCCCCCCCCCCHHHHHHH
Confidence 889999997 45 4599999999999999999999999999888 7789999999999875 789999999999999
Q ss_pred HHHcCCCCCCCCCccccCCCCCCCCCcc--chhhhhhcccccCCC--CCCCcEEecceEEcCCChHHHHHHHH-hcCCEE
Q 048002 196 IAKSEGLTTEKSYPYTAKDGSCELPTSM--VSIIYRVHICSWNGD--KNAPEVILDGYEMVPESDENALMKAV-ANQPVA 270 (351)
Q Consensus 196 ~~~~~Gi~~e~~yPY~~~~~~c~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~i~~~~~v~~~~~~~i~~~l-~~gPV~ 270 (351)
++++ |+++|++|||......|...... .........|..... .....+++.++..+. .++++||.+| .+|||+
T Consensus 81 i~~~-G~~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~-~~~~~ik~~l~~~GPv~ 158 (236)
T cd02620 81 LTTT-GVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKCQDGCEKTYEEDKHKGKSAYSVP-SDETDIMKEIMTNGPVQ 158 (236)
T ss_pred HHhc-CCCcCCEecCcCCCCccCCCCCCCCCCCCCCCCCCCcCCccccceeeeeecceeeeC-CHHHHHHHHHHHCCCeE
Confidence 9987 99999999998876544211000 000000112321110 012234556666665 3788999998 579999
Q ss_pred EEEecCCCCccCCCC-------------------ccccCCCCccEEEEEcCCCCCccCCceEEEEecCCCCCCCcccccc
Q 048002 271 VAIDAGGKDFQFYSE-------------------GYGATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLE 331 (351)
Q Consensus 271 v~~~~~~~~f~~Y~~-------------------Gyg~~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~ 331 (351)
|+|.+. ++|+.|++ |||++ +|++|||||||||++|||+|||||+|+. +.|||++.
T Consensus 159 v~i~~~-~~f~~Y~~Giy~~~~~~~~~~HaV~iVGyg~~-~g~~YWivrNSWG~~WGe~Gy~ri~~~~----~~cgi~~~ 232 (236)
T cd02620 159 AAFTVY-EDFLYYKSGVYQHTSGKQLGGHAVKIIGWGVE-NGVPYWLAANSWGTDWGENGYFRILRGS----NECGIESE 232 (236)
T ss_pred EEEEec-hhhhhcCCcEEeecCCCCcCCeEEEEEEEecc-CCeeEEEEEeCCCCCCCCCcEEEEEccC----cccccccc
Confidence 999996 79999977 99987 8899999999999999999999999985 46999988
Q ss_pred cc
Q 048002 332 AS 333 (351)
Q Consensus 332 ~~ 333 (351)
++
T Consensus 233 ~~ 234 (236)
T cd02620 233 VV 234 (236)
T ss_pred ee
Confidence 65
No 10
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=100.00 E-value=1.1e-48 Score=386.76 Aligned_cols=197 Identities=25% Similarity=0.532 Sum_probs=160.0
Q ss_pred CCCCCceeccCCC---CCCccCCCCC---CchHHHHHHHHHhhhhHHHhhC------CCccCCHHHhhhcCCCCCCCCCC
Q 048002 120 QDLPPSVDWRKQG---AVTGVKDQGR---CGSCWAFSTVVSVEGINKIKTG------ELWSLSEQELVDCDKDNHGCDGG 187 (351)
Q Consensus 120 ~~lP~~~Dwr~~g---~v~pVknQg~---cGsCwAfA~~~~~e~~~~i~~~------~~~~lS~q~l~dc~~~~~gC~GG 187 (351)
.+||++||||++| +|+||||||. ||||||||++++||++++|+++ ..+.||+|+|+||+..+.||+||
T Consensus 203 ~~LP~sfDWR~~gg~~~VtpVrdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~~n~GCdGG 282 (548)
T PTZ00364 203 DPPPAAWSWGDVGGASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQYGQGCAGG 282 (548)
T ss_pred cCCCCccccCcCCCCccCCCCcCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccCCCCCCCCC
Confidence 5799999999987 7999999999 9999999999999999999884 46889999999999878999999
Q ss_pred chHHHHHHHHHcCCCCCCCCC--ccccCCC---CCCCCCccchhhhhhcccccCCCCCCCcEEecceEEcCCChHHHHHH
Q 048002 188 LMEQALNFIAKSEGLTTEKSY--PYTAKDG---SCELPTSMVSIIYRVHICSWNGDKNAPEVILDGYEMVPESDENALMK 262 (351)
Q Consensus 188 ~~~~a~~~~~~~~Gi~~e~~y--PY~~~~~---~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~~i~~ 262 (351)
++..|++|+.++ ||++|++| ||.+.++ .|..... ...+ .......+.+|..+. .++++|+.
T Consensus 283 ~p~~A~~yi~~~-GI~tE~dY~~PY~~~dg~~~~Ck~~~~--~~~y----------~~~~~~~I~gyy~~~-~~e~~I~~ 348 (548)
T PTZ00364 283 FPEEVGKFAETF-GILTTDSYYIPYDSGDGVERACKTRRP--SRRY----------YFTNYGPLGGYYGAV-TDPDEIIW 348 (548)
T ss_pred cHHHHHHHHHhC-CcccccccCCCCCCCCCCCCCCCCCcc--ccee----------eeeeeEEecceeecC-CcHHHHHH
Confidence 999999999887 99999999 9987655 4754320 0000 001123455555554 36788988
Q ss_pred HH-hcCCEEEEEecCCCCccCCCC--------------------------------------ccccCCCCccEEEEEcCC
Q 048002 263 AV-ANQPVAVAIDAGGKDFQFYSE--------------------------------------GYGATQDGTKYWIVKNSW 303 (351)
Q Consensus 263 ~l-~~gPV~v~~~~~~~~f~~Y~~--------------------------------------Gyg~~~~g~~yWivkNSW 303 (351)
+| .+|||+|+|+++ .+|..|++ |||.+++|.+||||||||
T Consensus 349 eI~~~GPVsVaIda~-~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~G~~YWIVKNSW 427 (548)
T PTZ00364 349 EIYRHGPVPASVYAN-SDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPW 427 (548)
T ss_pred HHHHcCCeEEEEEec-hHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccCCCceEEEEECCC
Confidence 88 679999999997 56665421 788654788999999999
Q ss_pred CC--CccCCceEEEEecCCCCCCCcccccccc--ee
Q 048002 304 GT--DWEEKGYIRMLRGIDAEEGLCGITLEAS--YP 335 (351)
Q Consensus 304 G~--~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~--yp 335 (351)
|+ +|||+|||||+||. |.|||++.++ +|
T Consensus 428 Gt~~~WGE~GYfRI~RG~----N~CGIes~~v~~~~ 459 (548)
T PTZ00364 428 GSRRSWCDGGTRKIARGV----NAYNIESEVVVMYW 459 (548)
T ss_pred CCCCCcccCCeEEEEcCC----Ccccccceeeeeee
Confidence 99 99999999999995 4599999876 66
No 11
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=100.00 E-value=7.4e-49 Score=352.35 Aligned_cols=194 Identities=44% Similarity=0.883 Sum_probs=164.6
Q ss_pred CCCceeccCC-CCCCccCCCCCCchHHHHHHHHHhhhhHHHhh-CCCccCCHHHhhhcCC-CCCCCCCCchHHHHHHHHH
Q 048002 122 LPPSVDWRKQ-GAVTGVKDQGRCGSCWAFSTVVSVEGINKIKT-GELWSLSEQELVDCDK-DNHGCDGGLMEQALNFIAK 198 (351)
Q Consensus 122 lP~~~Dwr~~-g~v~pVknQg~cGsCwAfA~~~~~e~~~~i~~-~~~~~lS~q~l~dc~~-~~~gC~GG~~~~a~~~~~~ 198 (351)
||++||||+. +.++||+|||.||+|||||+++++|++++++. ...++||+|+|++|.. .+.+|+||++..|++++++
T Consensus 1 lP~~~D~r~~~~~~~~v~dQg~~gsCwafa~~~~~e~~~~~~~~~~~~~lS~q~l~~~~~~~~~~c~gg~~~~a~~~~~~ 80 (219)
T PF00112_consen 1 LPKSFDWRDKGGRITPVRDQGSCGSCWAFAAAAALESRLAIQNNGKNVDLSEQYLIDCSNKYNKGCDGGSPFDALKYIKN 80 (219)
T ss_dssp STSSEEGGGTTTCSG---BTTSSBTHHHHHHHHHHHHHHHHHHTSSCEEB-HHHHHHHSTGTSSTTBBBEHHHHHHHHHH
T ss_pred CCCCEecccCCCCcCccccCCcccccccchhccceeccccccccccccccccccccccccccccccccCcccccceeecc
Confidence 7999999998 48999999999999999999999999999999 7889999999999997 6789999999999999999
Q ss_pred cCCCCCCCCCccccCC-CCCCCCCccchhhhhhcccccCCCCCCCcEEecceEEcCCChHHHHHHHHh-cCCEEEEEecC
Q 048002 199 SEGLTTEKSYPYTAKD-GSCELPTSMVSIIYRVHICSWNGDKNAPEVILDGYEMVPESDENALMKAVA-NQPVAVAIDAG 276 (351)
Q Consensus 199 ~~Gi~~e~~yPY~~~~-~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~~i~~~l~-~gPV~v~~~~~ 276 (351)
+.|+++|++|||.... ..|..... .....++.+|..+...++++|+++|. +|||++++.+.
T Consensus 81 ~~Gi~~e~~~pY~~~~~~~c~~~~~-----------------~~~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~ 143 (219)
T PF00112_consen 81 NNGIVTEEDYPYNGNENPTCKSKKS-----------------NSYYVKIKGYGKVKDNDIEDIKKALMKYGPVVASIDVS 143 (219)
T ss_dssp HTSBEBTTTS--SSSSSCSSCHSGG-----------------GEEEBEESEEEEEESTCHHHHHHHHHHHSSEEEEEEEE
T ss_pred cCccccccccccccccccccccccc-----------------ccccccccccccccccchhHHHHHHhhCceeeeeeecc
Confidence 3399999999999876 57775430 11246888999988777999999995 59999999998
Q ss_pred CCCccCCCC--------------------ccccCCCCccEEEEEcCCCCCccCCceEEEEecCCCCCCCcccccccceee
Q 048002 277 GKDFQFYSE--------------------GYGATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPV 336 (351)
Q Consensus 277 ~~~f~~Y~~--------------------Gyg~~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~yp~ 336 (351)
..+|..|++ |||++ .+++|||||||||++||++|||||+|+.+ ++|||++.++||+
T Consensus 144 ~~~f~~~~~gi~~~~~~~~~~~~Hav~iVGy~~~-~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~---~~c~i~~~~~~~~ 219 (219)
T PF00112_consen 144 SEDFQNYKSGIYDPPDCSNESGGHAVLIVGYDDE-NGKGYWIVKNSWGTDWGDNGYFRISYDYN---NECGIESQAVYPI 219 (219)
T ss_dssp SHHHHTEESSEECSTSSSSSSEEEEEEEEEEEEE-TTEEEEEEE-SBTTTSTBTTEEEEESSSS---SGGGTTSSEEEEE
T ss_pred ccccccccceeeeccccccccccccccccccccc-cceeeEeeehhhCCccCCCeEEEEeeCCC---CcCccCceeeecC
Confidence 335888876 99997 79999999999999999999999999975 3699999999996
No 12
>PTZ00049 cathepsin C-like protein; Provisional
Probab=100.00 E-value=1e-47 Score=383.60 Aligned_cols=212 Identities=25% Similarity=0.541 Sum_probs=163.9
Q ss_pred CCCCCCceeccCC----CCCCccCCCCCCchHHHHHHHHHhhhhHHHhhCC-----C-----ccCCHHHhhhcCCCCCCC
Q 048002 119 TQDLPPSVDWRKQ----GAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGE-----L-----WSLSEQELVDCDKDNHGC 184 (351)
Q Consensus 119 ~~~lP~~~Dwr~~----g~v~pVknQg~cGsCwAfA~~~~~e~~~~i~~~~-----~-----~~lS~q~l~dc~~~~~gC 184 (351)
..+||.+||||+. +.++||+|||.||||||||++++||++++|++++ . ..||+|+|+||+..+.||
T Consensus 378 ~~~LP~sfDWRd~~~~~~~vtpVkdQG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~~nqGC 457 (693)
T PTZ00049 378 IDELPKNFTWGDPFNNNTREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSFYDQGC 457 (693)
T ss_pred cccCCCCEecCcCCCCCCcccCCCCCccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCCCCCCc
Confidence 4589999999984 6799999999999999999999999999998643 1 279999999999888999
Q ss_pred CCCchHHHHHHHHHcCCCCCCCCCccccCCCCCCCCCccchh-hh---hh---------ccccc--------CCCCCCCc
Q 048002 185 DGGLMEQALNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSI-IY---RV---------HICSW--------NGDKNAPE 243 (351)
Q Consensus 185 ~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~c~~~~~~~~~-~~---~~---------~~~~~--------~~~~~~~~ 243 (351)
+||++..|++|+.++ ||++|++|||.+..+.|......... .. .. ..|.. ........
T Consensus 458 ~GG~~~~A~kya~~~-GI~tEscYPY~a~~g~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 536 (693)
T PTZ00049 458 NGGFPYLVSKMAKLQ-GIPLDKVFPYTATEQTCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEPAR 536 (693)
T ss_pred CCCcHHHHHHHHHHC-CCCcCCccCCcCCCCCCCCCCCCccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999887 99999999999988889654311100 00 00 00000 00011234
Q ss_pred EEecceEEcC-------CChHHHHHHHH-hcCCEEEEEecCCCCccCCCC------------------------------
Q 048002 244 VILDGYEMVP-------ESDENALMKAV-ANQPVAVAIDAGGKDFQFYSE------------------------------ 285 (351)
Q Consensus 244 ~~i~~~~~v~-------~~~~~~i~~~l-~~gPV~v~~~~~~~~f~~Y~~------------------------------ 285 (351)
+.++.|..+. ..+++.|+.+| .+|||+|+|++. .+|++|++
T Consensus 537 ~y~k~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~-~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~G~ 615 (693)
T PTZ00049 537 WYAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEAS-PDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITGW 615 (693)
T ss_pred eeeeeeEEecccccccCCCCHHHHHHHHHhcCCEEEEEEec-hhhhcCCCccccCcccccccccCCcccccccccccccc
Confidence 4566666653 24688899888 579999999997 67887753
Q ss_pred ----------ccccCC-CCc--cEEEEEcCCCCCccCCceEEEEecCCCCCCCcccccccceee
Q 048002 286 ----------GYGATQ-DGT--KYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEASYPV 336 (351)
Q Consensus 286 ----------Gyg~~~-~g~--~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~yp~ 336 (351)
|||.+. +|. +|||||||||++||++|||||+|+. |.|||++.++|+.
T Consensus 616 e~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfKI~RG~----N~CGIEs~a~~~~ 675 (693)
T PTZ00049 616 EKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGK----NFSGIESQSLFIE 675 (693)
T ss_pred ccCceEEEEEEeccccCCCcccCEEEEECCCCCCcccCceEEEEcCC----CccCCccceeEEe
Confidence 577542 353 7999999999999999999999995 4699999998865
No 13
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=100.00 E-value=2.2e-43 Score=306.68 Aligned_cols=168 Identities=51% Similarity=0.934 Sum_probs=125.5
Q ss_pred CCCceeccCCCCCCccCCCCCCchHHHHHHHHHhhhhHHHhhCCCccCCHHHhhhcCCC-CCCCCCCchHHHHHHHHHcC
Q 048002 122 LPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDKD-NHGCDGGLMEQALNFIAKSE 200 (351)
Q Consensus 122 lP~~~Dwr~~g~v~pVknQg~cGsCwAfA~~~~~e~~~~i~~~~~~~lS~q~l~dc~~~-~~gC~GG~~~~a~~~~~~~~ 200 (351)
||++||||+.++++||+|||.||+|||||+++++|+++++++++.++||+|+|++|... +.||+||++..|++|+.++.
T Consensus 1 lP~~~D~R~~~~~~~v~dQg~CGsCwAfa~~~~ie~~~~i~~~~~~~lS~q~l~~C~~~~~~gC~GG~~~~a~~~~~~~~ 80 (174)
T smart00645 1 LPESFDWRKKGAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSTGGNNGCNGGLPDNAFEYIKKNG 80 (174)
T ss_pred CCCcCcccccCCCCccccCcccchHHHHHHHHHHHHHHHHhcCCccccCHHHHhhhcCCCCCCCCCcCHHHHHHHHHHcC
Confidence 69999999999999999999999999999999999999999998999999999999974 66999999999999998865
Q ss_pred CCCCCCCCccccCCCCCCCCCccchhhhhhcccccCCCCCCCcEEecceEEcCCChHHHHHHHHhcCCEEEEEecCCCCc
Q 048002 201 GLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNAPEVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDF 280 (351)
Q Consensus 201 Gi~~e~~yPY~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~~i~~~l~~gPV~v~~~~~~~~f 280 (351)
|+++|++|||... +.... ..-...-.|....+..... ....++.+.
T Consensus 81 Gi~~e~~~PY~~~---~~~~~------------------~~f~~Y~~Gi~~~~~~~~~---------~~~Hav~iv---- 126 (174)
T smart00645 81 GLETESCYPYTGS---VAIDA------------------SDFQFYKSGIYDHPGCGSG---------TLDHAVLIV---- 126 (174)
T ss_pred CcccccccCcccE---EEEEc------------------ccccCCcCeEECCCCCCCC---------cccEEEEEE----
Confidence 9999999999650 00000 0000000011100000000 011122222
Q ss_pred cCCCCccccCCCCccEEEEEcCCCCCccCCceEEEEecCCCCCCCcccccc
Q 048002 281 QFYSEGYGATQDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLE 331 (351)
Q Consensus 281 ~~Y~~Gyg~~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~ 331 (351)
|||.+.+|++|||||||||+.|||+|||||.|+. .+.|||+..
T Consensus 127 -----Gyg~~~~g~~yWii~NSwG~~WG~~G~~~i~~~~---~~~c~i~~~ 169 (174)
T smart00645 127 -----GYGTEENGKDYWIVKNSWGTDWGENGYFRIARGK---NNECGIEAS 169 (174)
T ss_pred -----EEeecCCCeeEEEEECCCCCCcccCeEEEEEcCC---CCccCceee
Confidence 8886546889999999999999999999999985 146999654
No 14
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=100.00 E-value=5.5e-41 Score=301.86 Aligned_cols=177 Identities=40% Similarity=0.626 Sum_probs=151.3
Q ss_pred ceeccCCCCCCccCCCCCCchHHHHHHHHHhhhhHHHhhC--CCccCCHHHhhhcCCC-----CCCCCCCchHHHHH-HH
Q 048002 125 SVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTG--ELWSLSEQELVDCDKD-----NHGCDGGLMEQALN-FI 196 (351)
Q Consensus 125 ~~Dwr~~g~v~pVknQg~cGsCwAfA~~~~~e~~~~i~~~--~~~~lS~q~l~dc~~~-----~~gC~GG~~~~a~~-~~ 196 (351)
.+|||+.+ ++||+|||.||+|||||+++++|++++++++ +.+.||+|+|++|... ..+|.||.+..++. ++
T Consensus 1 ~~d~r~~~-~~~v~dQg~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~~~~~ 79 (223)
T cd02619 1 SVDLRPLR-LTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSALLKLV 79 (223)
T ss_pred CCcchhcC-CCCcccCCCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHHHHHH
Confidence 48999988 9999999999999999999999999999987 8899999999999873 26999999999998 77
Q ss_pred HHcCCCCCCCCCccccCCCCCCCCCccchhhhhhcccccCCCCCCCcEEecceEEcCCChHHHHHHHHh-cCCEEEEEec
Q 048002 197 AKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNAPEVILDGYEMVPESDENALMKAVA-NQPVAVAIDA 275 (351)
Q Consensus 197 ~~~~Gi~~e~~yPY~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~~i~~~l~-~gPV~v~~~~ 275 (351)
+.+ |+++|.+|||......|..... .......+++..|..+...++++||++|. .|||+++|.+
T Consensus 80 ~~~-Gi~~e~~~Py~~~~~~~~~~~~--------------~~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv~~~~~~ 144 (223)
T cd02619 80 ALK-GIPPEEDYPYGAESDGEEPKSE--------------AALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDV 144 (223)
T ss_pred HHc-CCCccccCCCCCCCCCCCCCCc--------------cchhhcceeecceeEeCchhHHHHHHHHHHCCCEEEEEEc
Confidence 776 9999999999988777654310 00123457888999887777899999995 5899999999
Q ss_pred CCCCccCCCC-------------------------ccccCCC--CccEEEEEcCCCCCccCCceEEEEecC
Q 048002 276 GGKDFQFYSE-------------------------GYGATQD--GTKYWIVKNSWGTDWEEKGYIRMLRGI 319 (351)
Q Consensus 276 ~~~~f~~Y~~-------------------------Gyg~~~~--g~~yWivkNSWG~~WGe~Gy~~i~r~~ 319 (351)
. ..|..|++ |||++ . +++|||||||||+.||++||+||+++.
T Consensus 145 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Hav~ivGy~~~-~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~~ 213 (223)
T cd02619 145 Y-SGFDRLKEGIIYEEIVYLLYEDGDLGGHAVVIVGYDDN-YVEGKGAFIVKNSWGTDWGDNGYGRISYED 213 (223)
T ss_pred c-cchhcccCccccccccccccCCCccCCeEEEEEeecCC-CCCCCCEEEEEeCCCCccccCCEEEEehhh
Confidence 7 67776653 88876 4 789999999999999999999999985
No 15
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only]
Probab=100.00 E-value=3.1e-42 Score=310.31 Aligned_cols=263 Identities=24% Similarity=0.461 Sum_probs=203.3
Q ss_pred HHHHHHccCCCCeEEE-cccCCCCChhhhhhhcCCccccCccCCCCCCccccccCCCCCCCCceeccCC--CCCCccCCC
Q 048002 64 KRIHKVNQMDKPYKLR-LNRFADMTNHEFMSSRSSKVSHHRMLHGPRRQTGFMHGKTQDLPPSVDWRKQ--GAVTGVKDQ 140 (351)
Q Consensus 64 ~~I~~~N~~~~s~~~g-~N~FsD~t~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~--g~v~pVknQ 140 (351)
.+|+++|..+.+|+++ +.+|..||.++-.+..||..++++++....+-. .......+||+.||.|++ +++.|+-||
T Consensus 151 d~iE~in~G~YgW~A~NYSaFWGmtL~DGiKyRLGTL~Ps~sv~nMNEi~-~~l~p~~~LPE~F~As~KWp~liH~plDQ 229 (470)
T KOG1544|consen 151 DMIEAINQGNYGWQAGNYSAFWGMTLDDGIKYRLGTLRPSSSVMNMNEIY-TVLNPGEVLPEAFEASEKWPNLIHEPLDQ 229 (470)
T ss_pred HHHHHHhcCCccccccchhhhhcccccccceeeecccCchhhhhhHHhHh-hccCcccccchhhhhhhcCCccccCcccc
Confidence 3699999988899997 679999999998888888766544332222110 011223689999999997 899999999
Q ss_pred CCCchHHHHHHHHHhhhhHHHhhCC--CccCCHHHhhhcCC-CCCCCCCCchHHHHHHHHHcCCCCCCCCCccccCC---
Q 048002 141 GRCGSCWAFSTVVSVEGINKIKTGE--LWSLSEQELVDCDK-DNHGCDGGLMEQALNFIAKSEGLTTEKSYPYTAKD--- 214 (351)
Q Consensus 141 g~cGsCwAfA~~~~~e~~~~i~~~~--~~~lS~q~l~dc~~-~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~--- 214 (351)
|+|++.|||+++++...+++|.+.. ...||+|+|++|.. ..+||.||..+.|+=|+.+. |+|...||||...+
T Consensus 230 gnCa~SWafSTaavasDRiAI~S~GR~t~~LSpQnLlSC~~h~q~GC~gG~lDRAWWYlRKr-GvVsdhCYP~~~dQ~~~ 308 (470)
T KOG1544|consen 230 GNCAGSWAFSTAAVASDRVAIHSLGRMTPVLSPQNLLSCDTHQQQGCRGGRLDRAWWYLRKR-GVVSDHCYPFSGDQAGP 308 (470)
T ss_pred CCcccceeeeeehhccceeEEeeccccccccChHHhcchhhhhhccCccCcccchheeeecc-cccccccccccCCCCCC
Confidence 9999999999999999999998653 35899999999987 67899999999999999987 99999999997633
Q ss_pred -CCCCCCCc--cchhhhhhcccccCCCCCCCcEEecceEEcCCChHHHHHHHHhcCCEEEEEecCCCCccCCCC------
Q 048002 215 -GSCELPTS--MVSIIYRVHICSWNGDKNAPEVILDGYEMVPESDENALMKAVANQPVAVAIDAGGKDFQFYSE------ 285 (351)
Q Consensus 215 -~~c~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~~i~~~l~~gPV~v~~~~~~~~f~~Y~~------ 285 (351)
+.|-..+. .........-|..+...+...++++.-..|.++.++.|++++.+|||.+.|.|- +||.+|++
T Consensus 309 ~~~C~m~sR~~grgkRqat~~CPn~~~~Sn~iyq~tPPYrVSSnE~eImkElM~NGPVQA~m~VH-EDFF~YkgGiY~H~ 387 (470)
T KOG1544|consen 309 APPCMMHSRAMGRGKRQATAHCPNSYVNSNDIYQVTPPYRVSSNEKEIMKELMENGPVQALMEVH-EDFFLYKGGIYSHT 387 (470)
T ss_pred CCCceeeccccCcccccccCcCCCcccccCceeeecCCeeccCCHHHHHHHHHhCCChhhhhhhh-hhhhhhccceeecc
Confidence 44654331 011111223365554444567777776677665455555555999999999996 99999987
Q ss_pred ---------------------ccccCC--CC--ccEEEEEcCCCCCccCCceEEEEecCCCCCCCcccccccc
Q 048002 286 ---------------------GYGATQ--DG--TKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEAS 333 (351)
Q Consensus 286 ---------------------Gyg~~~--~g--~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~ 333 (351)
|||++. .| .+|||..||||+.|||+|||||.||+|+ |-|+++.+
T Consensus 388 ~~~~~~~e~yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGvNe----cdIEsfvI 456 (470)
T KOG1544|consen 388 PVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGVNE----CDIESFVI 456 (470)
T ss_pred ccccCCchhhhhcccceEEEeecccccCCCCCeeEEEEeecccccccccCceEEEeccccc----hhhhHhhh
Confidence 999862 23 5799999999999999999999999865 99999864
No 16
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=100.00 E-value=2.5e-40 Score=339.10 Aligned_cols=206 Identities=22% Similarity=0.375 Sum_probs=152.4
Q ss_pred CCccCCCCCCchHHHHHHHHHhhhhHHHhhCCCccCCHHHhhhcCC--CCCCCCCCc-hHHHHHHHHHcCCCCCCCCCcc
Q 048002 134 VTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQELVDCDK--DNHGCDGGL-MEQALNFIAKSEGLTTEKSYPY 210 (351)
Q Consensus 134 v~pVknQg~cGsCwAfA~~~~~e~~~~i~~~~~~~lS~q~l~dc~~--~~~gC~GG~-~~~a~~~~~~~~Gi~~e~~yPY 210 (351)
..||||||.||+|||||+++++|++++|+++..+.||+|+|+||+. .+.||.||. +..++.|+.+++|+++|++|||
T Consensus 544 ~i~VKDQG~CGSCWAFASaaaLES~~cIkgg~~v~LSeQqLVDCs~~~gn~GC~GG~~~~efl~yI~e~GgLptESdYPY 623 (1004)
T PTZ00462 544 KIQIEDQGNCAISWIFASKYHLETIKCMKGYEPHAISALYIANCSKGEHKDRCDEGSNPLEFLQIIEDNGFLPADSNYLY 623 (1004)
T ss_pred CCCcccCCcchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhcccccCCCCCCCCCcHHHHHHHHHHcCCCcccccCCC
Confidence 5789999999999999999999999999999999999999999986 368999997 4456689988767899999999
Q ss_pred cc--CCCCCCCCCccchhhhhh-cccccCCCCCCCcEEecceEEcCCC----h----HHHHHHHHh-cCCEEEEEecCCC
Q 048002 211 TA--KDGSCELPTSMVSIIYRV-HICSWNGDKNAPEVILDGYEMVPES----D----ENALMKAVA-NQPVAVAIDAGGK 278 (351)
Q Consensus 211 ~~--~~~~c~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~v~~~----~----~~~i~~~l~-~gPV~v~~~~~~~ 278 (351)
.. ..+.|+.....+..++.. ..+.... .....+.+.+|..+... + +++|+.+|. +|||+|+|++.
T Consensus 624 t~k~~~g~Cp~~~~~w~n~~~~~kll~~~~-~~~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI~~kGPVaV~IdAs-- 700 (1004)
T PTZ00462 624 NYTKVGEDCPDEEDHWMNLLDHGKILNHNK-KEPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMNKGSVIAYIKAE-- 700 (1004)
T ss_pred ccCCCCCCCCCCcccccccccccccccccc-cccceeeccceEEecccccccchhhHHHHHHHHHHhcCCEEEEEEee--
Confidence 75 456787543211111110 0000000 01123455677666432 1 468888885 59999999985
Q ss_pred CccCCC-C--------------------ccccC----CCCccEEEEEcCCCCCccCCceEEEEecCCCCCCCcccccccc
Q 048002 279 DFQFYS-E--------------------GYGAT----QDGTKYWIVKNSWGTDWEEKGYIRMLRGIDAEEGLCGITLEAS 333 (351)
Q Consensus 279 ~f~~Y~-~--------------------Gyg~~----~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~ 333 (351)
+|+.|. + |||.+ ..+++|||||||||+.|||+|||||.|.. .+.|||.....
T Consensus 701 df~~Y~~sGIyv~~~Cgs~~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g---~n~CGin~i~t 777 (1004)
T PTZ00462 701 NVLGYEFNGKKVQNLCGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYG---PSHCEDNFIHS 777 (1004)
T ss_pred hHHhhhcCCccccCCCCCCcCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEEEEeCC---CCCCccchhee
Confidence 687774 2 99974 13679999999999999999999999943 35699998888
Q ss_pred eeeecCCCCCCC
Q 048002 334 YPVKLHPENSRH 345 (351)
Q Consensus 334 yp~~~~~~~~~~ 345 (351)
+|+++-.-+..+
T Consensus 778 ~~~fn~d~~~~~ 789 (1004)
T PTZ00462 778 VVIFNIDLPKNK 789 (1004)
T ss_pred eeeEeecccccc
Confidence 888764444443
No 17
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.6e-25 Score=203.60 Aligned_cols=184 Identities=29% Similarity=0.493 Sum_probs=119.4
Q ss_pred CCCCCceeccCCCCCCccCCCCCCchHHHHHHHHHhhhhHHHhhCCCccCCHHH-----hhhcCC-CCCC-CCCCchHHH
Q 048002 120 QDLPPSVDWRKQGAVTGVKDQGRCGSCWAFSTVVSVEGINKIKTGELWSLSEQE-----LVDCDK-DNHG-CDGGLMEQA 192 (351)
Q Consensus 120 ~~lP~~~Dwr~~g~v~pVknQg~cGsCwAfA~~~~~e~~~~i~~~~~~~lS~q~-----l~dc~~-~~~g-C~GG~~~~a 192 (351)
..+|+.||||+.|.|+||||||.||+|||||+++++|+.+.-.. ..++|+-. .+.|.. ...+ -+||....+
T Consensus 97 ~s~~~~fd~r~~g~vs~v~dQg~~Gscwaf~t~~sles~l~~~~--~w~~s~~nm~~ll~~~ye~~fd~~~~d~g~~~m~ 174 (372)
T COG4870 97 ASLPSYFDRRDEGKVSPVKDQGSGGSCWAFATTRSLESYLNPES--AWDFSENNMKNLLGVPYEKGFDYTSNDGGNADMS 174 (372)
T ss_pred ccchhheeeeccCCcccccccCcccceEeeeehhhhhheecccc--cccccccchhhhcCCCccccCCCccccCCccccc
Confidence 35899999999999999999999999999999999999765443 23334333 233322 1111 248888888
Q ss_pred HHHHHHcCCCCCCCCCccccCCCCCCCCCccchhhhhhcccccCCCCCCCcEEecceEEcCCChHHHHHHHH-hcCCEE-
Q 048002 193 LNFIAKSEGLTTEKSYPYTAKDGSCELPTSMVSIIYRVHICSWNGDKNAPEVILDGYEMVPESDENALMKAV-ANQPVA- 270 (351)
Q Consensus 193 ~~~~~~~~Gi~~e~~yPY~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~~i~~~l-~~gPV~- 270 (351)
..|+.+..|.+.+.+-||......|..... ...+.+.|. +.-.....+ +...|+.++ ..|-+.
T Consensus 175 ~a~l~e~sgpv~et~d~y~~~s~~~~~~~p---~~k~~~~~~---------~i~~~~~~L---dnG~i~~~~~~yg~~s~ 239 (372)
T COG4870 175 AAYLTEWSGPVYETDDPYSENSYFSPTNLP---VTKHVQEAQ---------IIPSRKKYL---DNGNIKAMFGFYGAVSS 239 (372)
T ss_pred cccccccCCcchhhcCccccccccCCcCCc---hhhccccce---------ecccchhhh---cccchHHHHhhhccccc
Confidence 888888889999999999887666654320 001111110 011111122 222355555 345333
Q ss_pred -EEEecCCCCcc-----CCCC------------ccccC---------CCCccEEEEEcCCCCCccCCceEEEEecCCC
Q 048002 271 -VAIDAGGKDFQ-----FYSE------------GYGAT---------QDGTKYWIVKNSWGTDWEEKGYIRMLRGIDA 321 (351)
Q Consensus 271 -v~~~~~~~~f~-----~Y~~------------Gyg~~---------~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~ 321 (351)
+.|++. ..+. .|.. ||++. +.|.+.||||||||++||++|||||++....
T Consensus 240 ~~~id~~-~~~~~~~~~~~~~s~~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwisY~ya~ 316 (372)
T COG4870 240 SMYIDAT-NSLGICIPYPYVDSGENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYYYAL 316 (372)
T ss_pred eeEEecc-cccccccCCCCCCccccccceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEEeeecc
Confidence 335554 3333 1111 89875 3467899999999999999999999998643
No 18
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.81 E-value=6.4e-20 Score=178.51 Aligned_cols=76 Identities=28% Similarity=0.409 Sum_probs=64.0
Q ss_pred CccCCCCCCchHHHHHHHHHhhhhHHHh-hCCCccCCHHHhhhcCC----------------------------CCCCCC
Q 048002 135 TGVKDQGRCGSCWAFSTVVSVEGINKIK-TGELWSLSEQELVDCDK----------------------------DNHGCD 185 (351)
Q Consensus 135 ~pVknQg~cGsCwAfA~~~~~e~~~~i~-~~~~~~lS~q~l~dc~~----------------------------~~~gC~ 185 (351)
.||+||+.-|.||.||+.+++++.+..+ +.+.++||+.+++..++ .....+
T Consensus 55 ~~vtnQ~~SGrCW~FA~Ln~lr~~~~k~~~~~~felSq~Yl~f~dklEkaN~fle~ii~~~~~~~~~R~v~~ll~~~~~D 134 (437)
T cd00585 55 EPVTNQKSSGRCWLFAALNVLRHQFMKKLNLKEFEFSQSYLFFWDKLEKANYFLENIIETADEPLDDRLVQFLLANPQND 134 (437)
T ss_pred CCcccCCCCchhHHHHCHHHHHHHHHHHcCCCCEEeCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCcCC
Confidence 4899999999999999999999987764 45689999998876222 234579
Q ss_pred CCchHHHHHHHHHcCCCCCCCCCccc
Q 048002 186 GGLMEQALNFIAKSEGLTTEKSYPYT 211 (351)
Q Consensus 186 GG~~~~a~~~~~~~~Gi~~e~~yPY~ 211 (351)
||...++...+.+. |+++.+.||-+
T Consensus 135 GGqw~m~~~li~KY-GvVPk~~~pet 159 (437)
T cd00585 135 GGQWDMLVNLIEKY-GLVPKSVMPES 159 (437)
T ss_pred CCchHHHHHHHHHc-CCCcccccCCC
Confidence 99999999999997 99999999943
No 19
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....
Probab=99.66 E-value=2.5e-16 Score=111.55 Aligned_cols=56 Identities=39% Similarity=0.714 Sum_probs=49.5
Q ss_pred HHHHHHhc-cccCChHHHHHHHHHHHHHHHHHHHHc-cCCCCeEEEcccCCCCChhhh
Q 048002 36 YERWRSHH-TVSRDLKEKQIRFNVFKQNLKRIHKVN-QMDKPYKLRLNRFADMTNHEF 91 (351)
Q Consensus 36 f~~~~~~~-k~Y~~~~E~~~R~~~f~~n~~~I~~~N-~~~~s~~~g~N~FsD~t~eEf 91 (351)
|++|+++| |.|.+.+|+.+|+.+|++|++.|.+|| ..+.+|++|+|+|+|||.+||
T Consensus 1 F~~~~~~~~k~Y~~~~e~~~R~~~F~~N~~~I~~~N~~~~~~~~~~~N~fsD~t~eEf 58 (58)
T PF08246_consen 1 FEQFKKKYGKSYKSAEEEARRFAIFKENLRRIEEHNANGNNTYKLGLNQFSDMTPEEF 58 (58)
T ss_dssp HHHHHHHCT---SSHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEE-SSTTTTSSHHHH
T ss_pred CHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeCccccCcChhhC
Confidence 89999999 999999999999999999999999999 446899999999999999997
No 20
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=99.57 E-value=4.6e-15 Score=144.75 Aligned_cols=76 Identities=26% Similarity=0.388 Sum_probs=50.9
Q ss_pred CccCCCCCCchHHHHHHHHHhhhhHHHhhC-CCccCCHHHhhhc----------------CC------------CCCCCC
Q 048002 135 TGVKDQGRCGSCWAFSTVVSVEGINKIKTG-ELWSLSEQELVDC----------------DK------------DNHGCD 185 (351)
Q Consensus 135 ~pVknQg~cGsCwAfA~~~~~e~~~~i~~~-~~~~lS~q~l~dc----------------~~------------~~~gC~ 185 (351)
.||+||+.-|.||.||+..+++..+..+.+ +.++||+.+|... .. .....+
T Consensus 56 ~~vtnQk~SGRCW~FA~lN~lR~~~~kk~~l~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~~d~R~v~~ll~~~~~D 135 (438)
T PF03051_consen 56 GPVTNQKSSGRCWLFAALNVLRHEIMKKLNLKDFELSQNYLFFWDKLEKANYFLENIIDTADEPLDDRLVRFLLKNPVSD 135 (438)
T ss_dssp -S--B--BSSTHHHHHHHHHHHHHHHHHCT-SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHHSTT-S
T ss_pred CCCCCCCCCCCcchhhchHHHHHHHHHHcCCCceEeechHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhcCCCC
Confidence 489999999999999999999999887765 7899999987632 11 123479
Q ss_pred CCchHHHHHHHHHcCCCCCCCCCccc
Q 048002 186 GGLMEQALNFIAKSEGLTTEKSYPYT 211 (351)
Q Consensus 186 GG~~~~a~~~~~~~~Gi~~e~~yPY~ 211 (351)
||...++...+.+. |||+.+.||-+
T Consensus 136 GGqw~~~~nli~KY-GvVPk~~mpet 160 (438)
T PF03051_consen 136 GGQWDMVVNLIKKY-GVVPKSVMPET 160 (438)
T ss_dssp -B-HHHHHHHHHHH----BGGGSTTG
T ss_pred CCchHHHHHHHHHc-CcCcHhhCCCC
Confidence 99999999999997 99999999853
No 21
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29). This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s
Probab=99.49 E-value=3.7e-14 Score=99.93 Aligned_cols=55 Identities=40% Similarity=0.702 Sum_probs=52.2
Q ss_pred HHHHHHhc-cccCChHHHHHHHHHHHHHHHHHHHHccCC-CCeEEEcccCCCCChhh
Q 048002 36 YERWRSHH-TVSRDLKEKQIRFNVFKQNLKRIHKVNQMD-KPYKLRLNRFADMTNHE 90 (351)
Q Consensus 36 f~~~~~~~-k~Y~~~~E~~~R~~~f~~n~~~I~~~N~~~-~s~~~g~N~FsD~t~eE 90 (351)
|++|+.+| |.|.+.+|...|+.+|++|++.|+.||+.+ .+|++|+|+|+|||.+|
T Consensus 1 f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~i~~~N~~~~~~~~~~~N~fsDlt~eE 57 (57)
T smart00848 1 FEQWKKKYGKSYSSEEEELRRFEIFKENLKFIEEHNKKNDHSYTLGLNQFADLTNEE 57 (57)
T ss_pred ChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEecCcccccCCCCC
Confidence 68999999 999999999999999999999999999876 89999999999999987
No 22
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=98.82 E-value=3e-08 Score=91.50 Aligned_cols=75 Identities=24% Similarity=0.392 Sum_probs=59.2
Q ss_pred ccCCCCCCchHHHHHHHHHhhhhHHHhhC-CCccCCHHHhhhcCC----------------------------CCCCCCC
Q 048002 136 GVKDQGRCGSCWAFSTVVSVEGINKIKTG-ELWSLSEQELVDCDK----------------------------DNHGCDG 186 (351)
Q Consensus 136 pVknQg~cGsCwAfA~~~~~e~~~~i~~~-~~~~lS~q~l~dc~~----------------------------~~~gC~G 186 (351)
||.||...|.||.||+...+...+..+-+ +.+.||..+++..++ ...--+|
T Consensus 59 ~vtNQk~SGRCWmFAAlNtfRhk~~~el~le~fElSQaytfFwDKlEKaN~FleqIi~tadq~ldsRlv~~LL~~PqqDG 138 (444)
T COG3579 59 KVTNQKQSGRCWMFAALNTFRHKLISELKLEDFELSQAYTFFWDKLEKANWFLEQIIETADQELDSRLVSFLLATPQQDG 138 (444)
T ss_pred ccccccccceehHHHHHHHHHHHHHHhcCcceeehhhHHHHHHHHHHHhhHHHHHHHhhcccchHHHHHHHHHcCccccC
Confidence 89999999999999999998766554433 567899887765443 1223689
Q ss_pred CchHHHHHHHHHcCCCCCCCCCccc
Q 048002 187 GLMEQALNFIAKSEGLTTEKSYPYT 211 (351)
Q Consensus 187 G~~~~a~~~~~~~~Gi~~e~~yPY~ 211 (351)
|..++....+.+. |+++.++||=.
T Consensus 139 GQwdM~v~l~eKY-GvVpK~~ypes 162 (444)
T COG3579 139 GQWDMFVSLFEKY-GVVPKSVYPES 162 (444)
T ss_pred chHHHHHHHHHHh-CCCchhhcccc
Confidence 9999999998886 99999999843
No 23
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=96.67 E-value=0.0013 Score=42.60 Aligned_cols=35 Identities=14% Similarity=0.114 Sum_probs=22.5
Q ss_pred HHHHHHHccCCCCeEEEcccCCCCChhhhhhhcCCcc
Q 048002 63 LKRIHKVNQMDKPYKLRLNRFADMTNHEFMSSRSSKV 99 (351)
Q Consensus 63 ~~~I~~~N~~~~s~~~g~N~FsD~t~eEf~~~~~~~~ 99 (351)
-++|+.+|+.+.+|++|.| |.+.|.++++.+ +|..
T Consensus 3 de~I~~IN~~~~tWkAG~N-F~~~~~~~ik~L-lGv~ 37 (41)
T PF08127_consen 3 DEFIDYINSKNTTWKAGRN-FENTSIEYIKRL-LGVL 37 (41)
T ss_dssp HHHHHHHHHCT-SEEE-----SSB-HHHHHHC-S-B-
T ss_pred HHHHHHHHcCCCcccCCCC-CCCCCHHHHHHH-cCCC
Confidence 3689999999999999999 899999888665 4544
No 24
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=96.63 E-value=0.0012 Score=61.53 Aligned_cols=75 Identities=28% Similarity=0.379 Sum_probs=58.5
Q ss_pred CccCCCCCCchHHHHHHHHHhhhhHHHhhC-CCccCCHHHhhhcCC------------------------------CCCC
Q 048002 135 TGVKDQGRCGSCWAFSTVVSVEGINKIKTG-ELWSLSEQELVDCDK------------------------------DNHG 183 (351)
Q Consensus 135 ~pVknQg~cGsCwAfA~~~~~e~~~~i~~~-~~~~lS~q~l~dc~~------------------------------~~~g 183 (351)
+||.||.+.|-||.|+.+..+.-.+..+-+ ..+.||..+|+..++ .+..
T Consensus 63 ~pvtnqkssGrcWift~ln~lrl~~~~kLnl~eFElSqayLFFwdKlErcnyFL~~vvd~a~r~ep~DgRlvq~Ll~nP~ 142 (457)
T KOG4128|consen 63 QPVTNQKSSGRCWIFTGLNLLRLEMDRKLNLPEFELSQAYLFFWDKLERCNYFLWTVVDLAMRCEPLDGRLVQNLLKNPV 142 (457)
T ss_pred cccccCcCCCceEEEechhHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHhCCC
Confidence 699999999999999999987654443322 457899988764221 2334
Q ss_pred CCCCchHHHHHHHHHcCCCCCCCCCcc
Q 048002 184 CDGGLMEQALNFIAKSEGLTTEKSYPY 210 (351)
Q Consensus 184 C~GG~~~~a~~~~~~~~Gi~~e~~yPY 210 (351)
-+||...+.++.+++. |+.+.+|||-
T Consensus 143 ~DGGqw~MfvNlVkKY-GviPKkcy~~ 168 (457)
T KOG4128|consen 143 PDGGQWQMFVNLVKKY-GVIPKKCYLH 168 (457)
T ss_pred CCCchHHHHHHHHHHh-CCCcHHhccc
Confidence 5899999999999886 9999999984
No 25
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=74.99 E-value=24 Score=28.10 Aligned_cols=21 Identities=14% Similarity=0.400 Sum_probs=16.0
Q ss_pred ChHHHHHHHHhcC-CEEEEEec
Q 048002 255 SDENALMKAVANQ-PVAVAIDA 275 (351)
Q Consensus 255 ~~~~~i~~~l~~g-PV~v~~~~ 275 (351)
.+.+.|++.|..| ||.+.+..
T Consensus 87 ~~~~~i~~~i~~G~Pvi~~~~~ 108 (144)
T PF13529_consen 87 ASFDDIKQEIDAGRPVIVSVNS 108 (144)
T ss_dssp S-HHHHHHHHHTT--EEEEEET
T ss_pred CcHHHHHHHHHCCCcEEEEEEc
Confidence 4568899999887 99999974
No 26
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=54.00 E-value=8.1 Score=29.91 Aligned_cols=19 Identities=26% Similarity=0.543 Sum_probs=11.2
Q ss_pred ChHHHHHHHHHHHHhhccc
Q 048002 1 TFFLVGLSLVLVFGVAESF 19 (351)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (351)
+||||.|+|++++++.+.+
T Consensus 5 ~~llL~l~LA~lLlisSev 23 (95)
T PF07172_consen 5 AFLLLGLLLAALLLISSEV 23 (95)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 3666666666666665543
No 27
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=47.03 E-value=4.3 Score=38.40 Aligned_cols=24 Identities=42% Similarity=0.663 Sum_probs=20.4
Q ss_pred CccEEEEEcCCCCCccCCceEEEE
Q 048002 293 GTKYWIVKNSWGTDWEEKGYIRML 316 (351)
Q Consensus 293 g~~yWivkNSWG~~WGe~Gy~~i~ 316 (351)
+-.-|.|.||||++-|-+||..|.
T Consensus 389 ~~~~~rVenswgkd~gkkg~~~mt 412 (457)
T KOG4128|consen 389 GLNEHRVENSWGKDLGKKGVNKMT 412 (457)
T ss_pred Cchhhhhhchhhhhccccchhhhh
Confidence 445899999999999999996654
No 28
>KOG4654 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.66 E-value=2e+02 Score=25.20 Aligned_cols=75 Identities=15% Similarity=0.155 Sum_probs=42.0
Q ss_pred ccCCccccCCHHHHHHHHHHHHHhccccCCh---------------HHHHHHHHHHHHHHHHHHHHccCCCCeEEEcccC
Q 048002 19 FDYQESDLASEECLWDLYERWRSHHTVSRDL---------------KEKQIRFNVFKQNLKRIHKVNQMDKPYKLRLNRF 83 (351)
Q Consensus 19 ~~~~~~~~~~~~~~~~~f~~~~~~~k~Y~~~---------------~E~~~R~~~f~~n~~~I~~~N~~~~s~~~g~N~F 83 (351)
+++.++-+...+++..+|-+-..-||.+.+- ++..+-......=+..|+.+|.+-.+| +..|+.
T Consensus 112 Is~GDafl~~pde~ddLfYeii~mhknFdn~~S~vlrlstnagq~kdaaskv~~AL~ni~aiiehfnpKiedy-aavnhi 190 (252)
T KOG4654|consen 112 ISNGDAFLIRPDELDDLFYEIIHMHKNFDNFSSKVLRLSTNAGQIKDAASKVLGALNNILAIIEHFNPKIEDY-AAVNHI 190 (252)
T ss_pred HhCCCeeeeCchHHHHHHHHHHHHhcchhhHHHHHHHhccccccCchHHHHHHHHHHHHHHHHHhcCchhhhH-HHhccc
Confidence 4444444455566666766655555554321 222222333333344566667776666 458999
Q ss_pred CCCChhhhhhh
Q 048002 84 ADMTNHEFMSS 94 (351)
Q Consensus 84 sD~t~eEf~~~ 94 (351)
+.+|.+|....
T Consensus 191 ~qlsadeV~eV 201 (252)
T KOG4654|consen 191 PQLSADEVEEV 201 (252)
T ss_pred ccccHHHHHHH
Confidence 99999987543
No 29
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=28.07 E-value=1.8e+02 Score=23.20 Aligned_cols=46 Identities=4% Similarity=-0.013 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHHhc-cccCChHHHHHHHHHHHHHH-HHHHHHccCC
Q 048002 28 SEECLWDLYERWRSHH-TVSRDLKEKQIRFNVFKQNL-KRIHKVNQMD 73 (351)
Q Consensus 28 ~~~~~~~~f~~~~~~~-k~Y~~~~E~~~R~~~f~~n~-~~I~~~N~~~ 73 (351)
-.-++...-++|...- +.-.+.+|.+.+-..|..-+ +.+.++++++
T Consensus 35 V~fdmk~tld~F~~q~~~~~lte~q~~~~~~rF~~~L~~~L~~yq~~H 82 (112)
T TIGR02744 35 VAFDMKQTLDAFFDSASQKKLSEAQQKALLGRFNALLEAELQAWQAQH 82 (112)
T ss_pred EEEecHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3356777788888888 66668888899999999988 4567777665
No 30
>COG4871 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.19 E-value=49 Score=28.15 Aligned_cols=17 Identities=35% Similarity=0.870 Sum_probs=12.5
Q ss_pred ccCCCCCCc--hHHHHHHH
Q 048002 136 GVKDQGRCG--SCWAFSTV 152 (351)
Q Consensus 136 pVknQg~cG--sCwAfA~~ 152 (351)
|-.|=|.|| +|.|||.-
T Consensus 135 P~tNCg~CGEqtCmaFAiK 153 (193)
T COG4871 135 PQTNCGKCGEQTCMAFAIK 153 (193)
T ss_pred CCCccccchhHHHHHHHHH
Confidence 446677776 89999864
No 31
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=23.88 E-value=4.8e+02 Score=22.58 Aligned_cols=119 Identities=17% Similarity=0.202 Sum_probs=63.2
Q ss_pred CCCCCchHHHHHHHHHhhhhHHHhh--------CCCccCCHHHhhhcCCCCCCCCCCchHHHHHHHHHcCCCCCCCCCcc
Q 048002 139 DQGRCGSCWAFSTVVSVEGINKIKT--------GELWSLSEQELVDCDKDNHGCDGGLMEQALNFIAKSEGLTTEKSYPY 210 (351)
Q Consensus 139 nQg~cGsCwAfA~~~~~e~~~~i~~--------~~~~~lS~q~l~dc~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY 210 (351)
.||.=+=|-+||.+++|-.....+. .-...+|+++|.+++ -.+.+.++|.+.. |...
T Consensus 18 tQg~~pWCa~Ya~aailN~~~~~~~~~A~~iMr~~yPn~s~~~l~~~~--------~~~~~~i~y~ks~-g~~~------ 82 (175)
T PF05543_consen 18 TQGYNPWCAGYAMAAILNATTNTKIYNAKDIMRYLYPNVSEEQLKFTS--------LTPNQMIKYAKSQ-GRNP------ 82 (175)
T ss_dssp --SSSS-HHHHHHHHHHHHHCT-S---HHHHHHHHSTTS-CCCHHH----------B-HHHHHHHHHHT-TEEE------
T ss_pred ccCcCcHHHHHHHHHHHHhhhCcCcCCHHHHHHHHCCCCCHHHHhhcC--------CCHHHHHHHHHHc-Ccch------
Confidence 5888899999999998875422110 012356666666653 2345677776554 4221
Q ss_pred ccCCCCCCCCCccchhhhhhcccccCCCCCCCcEEecceEEcCCChHHHHHHHHhc-CCEEEEEecCCCCccCCC--C--
Q 048002 211 TAKDGSCELPTSMVSIIYRVHICSWNGDKNAPEVILDGYEMVPESDENALMKAVAN-QPVAVAIDAGGKDFQFYS--E-- 285 (351)
Q Consensus 211 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~~i~~~l~~-gPV~v~~~~~~~~f~~Y~--~-- 285 (351)
.+.. ...+.+++++.+.+ .|+.+........ .+. +
T Consensus 83 -------------------------------------~~~n-~~~s~~eV~~~~~~nk~i~i~~~~v~~~--~~~~~gHA 122 (175)
T PF05543_consen 83 -------------------------------------QYNN-RMPSFDEVKKLIDNNKGIAILADRVEQT--NGPHAGHA 122 (175)
T ss_dssp -------------------------------------EEEC-S---HHHHHHHHHTT-EEEEEEEETTSC--TTB--EEE
T ss_pred -------------------------------------hHhc-CCCCHHHHHHHHHcCCCeEEEecccccC--CCCcccee
Confidence 0100 01246778888854 5888766654233 322 2
Q ss_pred ----ccccCCCCccEEEEEcCCCCCccCCceEEEEe
Q 048002 286 ----GYGATQDGTKYWIVKNSWGTDWEEKGYIRMLR 317 (351)
Q Consensus 286 ----Gyg~~~~g~~yWivkNSWG~~WGe~Gy~~i~r 317 (351)
||-.-.+|.++.++=|=| +++++-++.
T Consensus 123 lavvGya~~~~g~~~y~~WNPW-----~~~~~~~sa 153 (175)
T PF05543_consen 123 LAVVGYAKPNNGQKTYYFWNPW-----WNDVMIQSA 153 (175)
T ss_dssp EEEEEEEEETTSEEEEEEE-TT------SS-EEEET
T ss_pred EEEEeeeecCCCCeEEEEeCCc-----cCCcEEEec
Confidence 887655779999999999 345555443
Done!